Psyllid ID: psy2692

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MNLHKVTSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVGT
Secondary Structure (PSIPRED)
ccccccHHHHHHccccHHHHHHHHHHHHccccccccHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcEEEEEccHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mnlhkvtsesinkssSFETAFKLLHDQIGVKNFLPYRQMFLNSYLqsrtaystlpllapvtafptrkvdrSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVGT
Flexible Loop (DISEMBL)
mnlhkvtsesinkssSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINIckeyivgt
Low Complexity Region (SEG)
MNLHKVTSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVGT
Disordered region (IsUnstruct)
*****************ETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIV**
Disordered Region (DISOPRED)
****KVT*ESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVGT
Disordered Region (DISEMBL)
*************SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVGT
Disordered Region (DISPRO)
**LHKVTSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVGT
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLHKVTSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVGT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
Q27954	1224	Coatomer subunit alpha OS	yes	N/A	0.894	0.097	0.488	5e-33
P53621	1224	Coatomer subunit alpha OS	yes	N/A	0.894	0.097	0.488	1e-32
Q8CIE6	1224	Coatomer subunit alpha OS	yes	N/A	0.894	0.097	0.488	1e-32
Q94A40	1216	Coatomer subunit alpha-1	yes	N/A	0.879	0.096	0.377	5e-18
Q9SJT9	1218	Coatomer subunit alpha-2	no	N/A	0.879	0.096	0.355	8e-17
Q0J3D9	1218	Coatomer subunit alpha-3	yes	N/A	0.887	0.096	0.320	3e-15
Q9AUR7	1218	Coatomer subunit alpha-2	yes	N/A	0.887	0.096	0.313	1e-14
Q55FR9	1221	Coatomer subunit alpha OS	yes	N/A	0.879	0.095	0.370	2e-14
Q9AUR8	1218	Coatomer subunit alpha-1	yes	N/A	0.887	0.096	0.298	4e-14
Q96WV5	1207	Putative coatomer subunit	yes	N/A	0.894	0.098	0.25	8e-07

>sp|Q27954|COPA_BOVIN Coatomer subunit alpha OS=Bos taurus GN=COPA PE=1 SV=1

 Score =  139 bits (350), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
            + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct: 933  AGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 992

Query: 74   ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 993  KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query: 122  IINICKEYIVG 132
            +I IC+EYIVG
Sbjct: 1053 LITICREYIVG 1063

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.
Bos taurus (taxid: 9913)

>sp|P53621|COPA_HUMAN Coatomer subunit alpha OS=Homo sapiens GN=COPA PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
            + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct: 933  AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 992

Query: 74   ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 993  KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query: 122  IINICKEYIVG 132
            +I IC+EYIVG
Sbjct: 1053 LITICREYIVG 1063

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.

Homo sapiens (taxid: 9606)

>sp|Q8CIE6|COPA_MOUSE Coatomer subunit alpha OS=Mus musculus GN=Copa PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 88/131 (67%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
            + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  + ++P R    + +
Sbjct: 933  AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMYSYPNRNWKDAGL 992

Query: 74   ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 993  KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query: 122  IINICKEYIVG 132
            +I IC+EYIVG
Sbjct: 1053 LITICREYIVG 1063

Xenin stimulates exocrine pancreatic secretion. It inhibits pentagastrin-stimulated secretion of acid, to induce exocrine pancreatic secretion and to affect small and large intestinal motility. In the gut, xenin interacts with the neurotensin receptor.

Mus musculus (taxid: 10090)

>sp|Q94A40|COPA1_ARATH Coatomer subunit alpha-1 OS=Arabidopsis thaliana GN=At1g62020 PE=1 SV=2

 Score = 89.4 bits (220), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 83/135 (61%), Gaps = 18/135 (13%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLN------SYLQSRTAYSTLPLL---------A 58
            + SF+TA +LLH Q+G+KNF P + MFL+      SYL++ ++   +PL          +
Sbjct: 927  AGSFDTAMRLLHRQLGIKNFTPLKSMFLDLFNGSHSYLRAFSSCPVVPLAIERGWSESSS 986

Query: 59   P-VTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIE 117
            P V + P    D S +D   K++  Y+ TT+GKF +A+    ++L  IPL+VV T++E++
Sbjct: 987  PNVRSPPALVYDFSQLD--EKLKSGYKATTTGKFTEALRLFLSILHTIPLVVVETRREVD 1044

Query: 118  EAKQIINICKEYIVG 132
            E K++I I KEY++G
Sbjct: 1045 EVKELIVIVKEYVLG 1059

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJT9|COPA2_ARATH Coatomer subunit alpha-2 OS=Arabidopsis thaliana GN=At2g21390 PE=2 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/135 (35%), Positives = 82/135 (60%), Gaps = 18/135 (13%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLN------SYLQSRTAYSTLPLL---------A 58
            + SF+TA +LLH Q+G+KNF P + MFL+      SYL++ ++   +PL          +
Sbjct: 928  AGSFDTAMRLLHRQLGIKNFAPLKSMFLDLFSGSHSYLRAFSSSPVVPLAIERGWSESSS 987

Query: 59   P-VTAFPTRKVDRSSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIE 117
            P V   P    D S ++  AK++  Y+ TT+GK  +A+    ++L  IPL+VV +++E++
Sbjct: 988  PNVRGPPALVFDFSQLE--AKLKSGYKATTAGKLSEALRVFLSILQTIPLVVVESRREVD 1045

Query: 118  EAKQIINICKEYIVG 132
            E K+++ I KEY++G
Sbjct: 1046 EVKELVIIVKEYVLG 1060

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0J3D9|COPA3_ORYSJ Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica GN=Os09g0127800 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 82/134 (61%), Gaps = 16/134 (11%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRT---AYSTLPLLAPV--------TA 62
            + +F+TA +LL  Q+G+KNF P + +FL+ ++ S +   A +T P++ PV        +A
Sbjct: 930  AGNFDTAMRLLSRQLGIKNFAPLKPLFLDLHMGSHSYLRALATAPII-PVAVEKGWSESA 988

Query: 63   FPTRKVDRSSI----DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEE 118
             P  +   + +     +  +++  Y+ TT GKF +A+ +  N+L  IPL+VV +++E++E
Sbjct: 989  SPNVRGPPALVFTFSQMEDRLKAAYKATTEGKFPEALRQFLNILHTIPLIVVDSRREVDE 1048

Query: 119  AKQIINICKEYIVG 132
             K++I I +EY++G
Sbjct: 1049 VKELIEIVREYVLG 1062

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9AUR7|COPA2_ORYSJ Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica GN=Os03g0711500 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 82/134 (61%), Gaps = 16/134 (11%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRT---AYSTLPLLAPV--------TA 62
            + +F+TA +LL  Q+G+KNF P + +FL+ ++ S +   A +T P++ PV        +A
Sbjct: 930  AGNFDTAMRLLSRQLGIKNFAPLKPLFLDLHMGSHSYLHALATAPII-PVAVEKGWSESA 988

Query: 63   FPTRKVDRSSI----DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEE 118
             P  +   + +     +  +++  Y+ TT GKF +A+ +  ++L  IPL+VV +++E++E
Sbjct: 989  SPNVRGPPALVFTFPQMEDRLKAAYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDE 1048

Query: 119  AKQIINICKEYIVG 132
             K++I I +EY++G
Sbjct: 1049 VKELIEIVREYVLG 1062

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q55FR9|COPA_DICDI Coatomer subunit alpha OS=Dictyostelium discoideum GN=copa PE=3 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 10/127 (7%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAY----STLPLLAPV---TAFPTR 66
            + SFE+A  +L+ QIG  NF P + MF+N ++ +R++     ST  LL P+   +A P  
Sbjct: 933  AGSFESAMNILNSQIGAVNFDPIKSMFMNIFMATRSSLGCNASTPSLLMPIQRKSAAPY- 991

Query: 67   KVDRSSIDLIAKIQ-QCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINI 125
             +      LI +++   Y+ TT GKF DA+     +L  I    V  K+E+ E K +INI
Sbjct: 992  -ITYGLGHLIERLKTNAYKSTTEGKFNDALSHFTYILHTIIFCSVDNKQEVNELKDLINI 1050

Query: 126  CKEYIVG 132
            C+EYI+G
Sbjct: 1051 CREYILG 1057

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9AUR8|COPA1_ORYSJ Coatomer subunit alpha-1 OS=Oryza sativa subsp. japonica GN=Os03g0711400 PE=2 SV=1

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 82/134 (61%), Gaps = 16/134 (11%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRT---AYSTLPLLAPV--------TA 62
            + +F+TA +LL  Q+G+KNF P + +F++ ++ S +   A +T P++ P+        +A
Sbjct: 930  AGNFDTAMRLLSRQLGIKNFAPLKPLFVDLHMGSHSYLRALATAPII-PIAVEKGWSESA 988

Query: 63   FPTRKVDRSSI----DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEE 118
             P  +   + +     +  +++  Y+ TT GKF +A+ +  ++L  IPL+VV +++E++E
Sbjct: 989  SPNVRGPPALVFTFPQMEDRLKAAYKATTDGKFPEALRQFLSILHTIPLIVVDSRREVDE 1048

Query: 119  AKQIINICKEYIVG 132
             K++I I +EY++G
Sbjct: 1049 VKELIEIVREYVLG 1062

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96WV5|COPA_SCHPO Putative coatomer subunit alpha OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBPJ4664.04 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRS-- 71
            +  FE+A K+L+ Q+G  NF P +  FL  Y  SR    T+  L P+ ++  R  + +  
Sbjct: 922  AGDFESAMKILNKQVGAINFSPLKTRFLEIYTASRVYLPTISGLDPLVSYVRRNAETAER 981

Query: 72   --SIDLIAK---------IQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAK 120
              ++  I +         + + Y+L  + K ++A    R+++      V  +++E +E  
Sbjct: 982  SQALPFITRNLASIKSHELHEAYRLVKANKILEAQICFRSIIYLALTTVANSEEEADEIS 1041

Query: 121  QIINICKEYIVG 132
             +I+ C  YIV 
Sbjct: 1042 ALIDECCRYIVA 1053

The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
157134451	1227	coatomer [Aedes aegypti] gi|108870473|gb	0.902	0.097	0.5	4e-35
157108446	1223	coatomer [Aedes aegypti] gi|108868541|gb	0.902	0.098	0.492	6e-35
170050521	1227	coatomer subunit alpha [Culex quinquefas	0.902	0.097	0.515	7e-35
242015300	1222	coatomer alpha subunit, putative [Pedicu	0.894	0.097	0.511	3e-33
326935892	1224	PREDICTED: coatomer subunit alpha-like [	0.894	0.097	0.496	5e-32
71897175	1224	coatomer subunit alpha [Gallus gallus] g	0.894	0.097	0.496	5e-32
355558637	1233	hypothetical protein EGK_01503 [Macaca m	0.894	0.096	0.496	6e-32
380809646	1224	coatomer subunit alpha isoform 2 [Macaca	0.894	0.097	0.496	6e-32
297280463	1138	PREDICTED: coatomer subunit alpha-like [	0.894	0.104	0.496	7e-32
348561634	1224	PREDICTED: coatomer subunit alpha isofor	0.894	0.097	0.496	2e-31

>gi|157134451|ref|XP_001663309.1| coatomer [Aedes aegypti] gi|108870473|gb|EAT34698.1| AAEL013098-PA [Aedes aegypti]

 Score =  152 bits (384), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 66/132 (50%), Positives = 98/132 (74%), Gaps = 12/132 (9%)

Query: 13   KSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSS 72
            ++ SFETAF+LLHDQIGV NF PY+++F+ S+L S+T+Y+ LP + P+ A+P R     +
Sbjct: 935  RAGSFETAFRLLHDQIGVVNFAPYKELFMESHLGSKTSYTCLPNMGPLGAYPNRNWKEMN 994

Query: 73   I------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAK 120
            I            DL+  +Q CYQLTT+GKF +AIEKL+++++CIPLLVV +++EI EA+
Sbjct: 995  IKNCHPTLAFKLNDLVQALQSCYQLTTTGKFTEAIEKLQHIILCIPLLVVESRQEIAEAQ 1054

Query: 121  QIINICKEYIVG 132
            Q++ IC+EY+VG
Sbjct: 1055 QLLTICREYVVG 1066

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108446|ref|XP_001650231.1| coatomer [Aedes aegypti] gi|108868541|gb|EAT32766.1| AAEL015001-PA [Aedes aegypti]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 65/132 (49%), Positives = 98/132 (74%), Gaps = 12/132 (9%)

Query: 13   KSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSS 72
            ++ SFETAF+LLHDQIGV NF PY+++F+ S+L S+T+Y+ LP + P+ A+P R     +
Sbjct: 931  RAGSFETAFRLLHDQIGVVNFAPYKELFMESHLGSKTSYTCLPNMGPLGAYPNRNWKEMN 990

Query: 73   I------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAK 120
            +            DL+  +Q CYQLTT+GKF +AIEKL+++++CIPLLVV +++EI EA+
Sbjct: 991  VKNCHPTLAFKLNDLVQALQSCYQLTTTGKFTEAIEKLQHIILCIPLLVVESRQEIAEAQ 1050

Query: 121  QIINICKEYIVG 132
            Q++ IC+EY+VG
Sbjct: 1051 QLLTICREYVVG 1062

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170050521|ref|XP_001861349.1| coatomer subunit alpha [Culex quinquefasciatus] gi|167872144|gb|EDS35527.1| coatomer subunit alpha [Culex quinquefasciatus]

 Score =  151 bits (382), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 68/132 (51%), Positives = 97/132 (73%), Gaps = 12/132 (9%)

Query: 13   KSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSS 72
            ++ SFETAF+LLHDQIGV NF PY+++FL S+L S+T+Y+ LP L P+TA P R     +
Sbjct: 935  RAGSFETAFRLLHDQIGVVNFAPYKELFLESHLGSKTSYTCLPNLGPLTAHPHRNWKELN 994

Query: 73   I------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAK 120
            +            DL+  +Q CYQLTT+GKF +AIEKL+ +++CIPLLVV +++EI EA+
Sbjct: 995  VKNTHPTLAFKLNDLVQALQSCYQLTTTGKFTEAIEKLQYIILCIPLLVVESRQEIAEAQ 1054

Query: 121  QIINICKEYIVG 132
            Q++ IC+EY+VG
Sbjct: 1055 QLLTICREYVVG 1066

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242015300|ref|XP_002428302.1| coatomer alpha subunit, putative [Pediculus humanus corporis] gi|212512887|gb|EEB15564.1| coatomer alpha subunit, putative [Pediculus humanus corporis]

 Score =  146 bits (368), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 67/131 (51%), Positives = 93/131 (70%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSS- 72
            + SFE+AF+LLHDQ+GV NF P+R +FLN+Y +SRT++S +PLL P+  +P R    S  
Sbjct: 930  AGSFESAFRLLHDQVGVVNFEPFRDLFLNTYSRSRTSFSAMPLLPPLFGYPLRNWKDSGP 989

Query: 73   -----------IDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DL+ ++Q CYQLTTSGKF +AI+K R +L+ IPLLVV +++EI EA Q
Sbjct: 990  KGGLPALGLKLSDLVQRLQVCYQLTTSGKFSEAIDKFRKLLLSIPLLVVDSRQEIAEATQ 1049

Query: 122  IINICKEYIVG 132
            ++ IC+EYIVG
Sbjct: 1050 LLQICREYIVG 1060

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|326935892|ref|XP_003213999.1| PREDICTED: coatomer subunit alpha-like [Meleagris gallopavo]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 89/131 (67%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
            + SFETA +LLHDQ+GV NF PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct: 933  AGSFETAMRLLHDQVGVTNFGPYKQLFLQTYARGRTTYQALPCLPTMYGYPHRNWKEAGL 992

Query: 74   ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DLI ++Q CYQLTT+GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 993  KNALPAVGLKLNDLIQRLQLCYQLTTAGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query: 122  IINICKEYIVG 132
            +I IC+EYIVG
Sbjct: 1053 LIAICREYIVG 1063

Source: Meleagris gallopavo

Species: Meleagris gallopavo

Genus: Meleagris

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|71897175|ref|NP_001026576.1| coatomer subunit alpha [Gallus gallus] gi|60099199|emb|CAH65430.1| hypothetical protein RCJMB04_34d13 [Gallus gallus]

 Score =  142 bits (358), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 89/131 (67%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
            + SFETA +LLHDQ+GV NF PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct: 933  AGSFETAMRLLHDQVGVTNFGPYKQLFLQTYARGRTTYQALPCLPTMYGYPHRNWKEAGL 992

Query: 74   ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DLI ++Q CYQLTT+GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 993  KNALPAVGLKLNDLIQRLQLCYQLTTAGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query: 122  IINICKEYIVG 132
            +I IC+EYIVG
Sbjct: 1053 LIAICREYIVG 1063

Source: Gallus gallus

Species: Gallus gallus

Genus: Gallus

Family: Phasianidae

Order: Galliformes

Class: Aves

Phylum: Chordata

Superkingdom: Eukaryota

>gi|355558637|gb|EHH15417.1| hypothetical protein EGK_01503 [Macaca mulatta] gi|355745812|gb|EHH50437.1| hypothetical protein EGM_01268 [Macaca fascicularis] gi|380809656|gb|AFE76703.1| coatomer subunit alpha isoform 1 [Macaca mulatta] gi|384939904|gb|AFI33557.1| coatomer subunit alpha isoform 1 [Macaca mulatta]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
            + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L P+  +P R    + +
Sbjct: 942  AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPPMYGYPNRNWKDAGL 1001

Query: 74   ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 1002 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1061

Query: 122  IINICKEYIVG 132
            +I IC+EYIVG
Sbjct: 1062 LITICREYIVG 1072

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|380809646|gb|AFE76698.1| coatomer subunit alpha isoform 2 [Macaca mulatta] gi|380809648|gb|AFE76699.1| coatomer subunit alpha isoform 2 [Macaca mulatta] gi|380809650|gb|AFE76700.1| coatomer subunit alpha isoform 2 [Macaca mulatta] gi|380809652|gb|AFE76701.1| coatomer subunit alpha isoform 2 [Macaca mulatta] gi|380809654|gb|AFE76702.1| coatomer subunit alpha isoform 2 [Macaca mulatta] gi|383411659|gb|AFH29043.1| coatomer subunit alpha isoform 2 [Macaca mulatta] gi|384939906|gb|AFI33558.1| coatomer subunit alpha isoform 2 [Macaca mulatta]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
            + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L P+  +P R    + +
Sbjct: 933  AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPPMYGYPNRNWKDAGL 992

Query: 74   ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 993  KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query: 122  IINICKEYIVG 132
            +I IC+EYIVG
Sbjct: 1053 LITICREYIVG 1063

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297280463|ref|XP_002801923.1| PREDICTED: coatomer subunit alpha-like [Macaca mulatta]

 Score =  141 bits (356), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 65/131 (49%), Positives = 88/131 (67%), Gaps = 12/131 (9%)

Query: 14  SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
           + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L P+  +P R    + +
Sbjct: 847 AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPPMYGYPNRNWKDAGL 906

Query: 74  ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                       DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 907 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 966

Query: 122 IINICKEYIVG 132
           +I IC+EYIVG
Sbjct: 967 LITICREYIVG 977

Source: Macaca mulatta

Species: Macaca mulatta

Genus: Macaca

Family: Cercopithecidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348561634|ref|XP_003466617.1| PREDICTED: coatomer subunit alpha isoform 1 [Cavia porcellus]

 Score =  140 bits (352), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 89/131 (67%), Gaps = 12/131 (9%)

Query: 14   SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
            + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  + A+P+R    + +
Sbjct: 933  AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMYAYPSRNWKDAGL 992

Query: 74   ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                        DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 993  KNGVPAIGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query: 122  IINICKEYIVG 132
            +I IC+EYIVG
Sbjct: 1053 LITICREYIVG 1063

Source: Cavia porcellus

Species: Cavia porcellus

Genus: Cavia

Family: Caviidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
UNIPROTKB|H9L3L2	1134	LOC100859596 "Uncharacterized	0.894	0.104	0.496	3.4e-28
UNIPROTKB|H9KZL3	1169	LOC100859596 "Uncharacterized	0.894	0.101	0.496	3.6e-28
RGD|1310525	568	Copa "coatomer protein complex	0.894	0.209	0.488	3.6e-28
UNIPROTKB|Q27954	1224	COPA "Coatomer subunit alpha"	0.894	0.097	0.488	2.2e-27
UNIPROTKB|F1RJX8	1224	COPA "Uncharacterized protein"	0.894	0.097	0.488	2.2e-27
UNIPROTKB|G3V6T1	1224	Copa "Protein Copa" [Rattus no	0.894	0.097	0.488	2.2e-27
MGI|MGI:1334462	1224	Copa "coatomer protein complex	0.894	0.097	0.488	2.7e-27
UNIPROTKB|F1PU93	1214	COPA "Coatomer subunit alpha"	0.894	0.098	0.488	3.5e-27
UNIPROTKB|P53621	1224	COPA "Coatomer subunit alpha"	0.894	0.097	0.488	3.5e-27
FB|FBgn0025725	1234	alphaCop "alpha-coatomer prote	0.902	0.097	0.5	3.6e-27

UNIPROTKB|H9L3L2 LOC100859596 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 3.4e-28, P = 3.4e-28
 Identities = 65/131 (49%), Positives = 89/131 (67%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV NF PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct:   843 AGSFETAMRLLHDQVGVTNFGPYKQLFLQTYARGRTTYQALPCLPTMYGYPHRNWKEAGL 902

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQLTT+GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   903 KNALPAVGLKLNDLIQRLQLCYQLTTAGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 962

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:   963 LIAICREYIVG 973

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

UNIPROTKB|H9KZL3 LOC100859596 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 3.6e-28, P = 3.6e-28
 Identities = 65/131 (49%), Positives = 89/131 (67%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV NF PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct:   878 AGSFETAMRLLHDQVGVTNFGPYKQLFLQTYARGRTTYQALPCLPTMYGYPHRNWKEAGL 937

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQLTT+GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   938 KNALPAVGLKLNDLIQRLQLCYQLTTAGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 997

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:   998 LIAICREYIVG 1008

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0030157 "pancreatic juice secretion" evidence=IEA

RGD|1310525 Copa "coatomer protein complex subunit alpha" [Rattus norvegicus (taxid:10116)]

 Score = 320 (117.7 bits), Expect = 3.6e-28, P = 3.6e-28
 Identities = 64/131 (48%), Positives = 88/131 (67%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  + ++P R    + +
Sbjct:   277 AGSFETAMRLLHDQVGVVQFGPYKQLFLQTYARGRTTYQALPCLPSMYSYPNRNWKDAGL 336

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQL+T GKF DA+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   337 KNGVPAVGLKLNDLIQRLQLCYQLSTVGKFEDAVEKFRSILLSVPLLVVDNKQEIAEAQQ 396

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:   397 LITICREYIVG 407

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030157 "pancreatic juice secretion" evidence=ISO

UNIPROTKB|Q27954 COPA "Coatomer subunit alpha" [Bos taurus (taxid:9913)]

 Score = 320 (117.7 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 64/131 (48%), Positives = 87/131 (66%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct:   933 AGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 992

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   993 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:  1053 LITICREYIVG 1063

GO:0005515 "protein binding" evidence=IPI

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0030126 "COPI vesicle coat" evidence=IDA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0030157 "pancreatic juice secretion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1RJX8 COPA "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 320 (117.7 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 64/131 (48%), Positives = 87/131 (66%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct:   933 AGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 992

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   993 KNGIPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:  1053 LITICREYIVG 1063

GO:0030157 "pancreatic juice secretion" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|G3V6T1 Copa "Protein Copa" [Rattus norvegicus (taxid:10116)]

 Score = 320 (117.7 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 64/131 (48%), Positives = 88/131 (67%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  + ++P R    + +
Sbjct:   933 AGSFETAMRLLHDQVGVVQFGPYKQLFLQTYARGRTTYQALPCLPSMYSYPNRNWKDAGL 992

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQL+T GKF DA+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   993 KNGVPAVGLKLNDLIQRLQLCYQLSTVGKFEDAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:  1053 LITICREYIVG 1063

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0030157 "pancreatic juice secretion" evidence=IEA

MGI|MGI:1334462 Copa "coatomer protein complex subunit alpha" [Mus musculus (taxid:10090)]

 Score = 319 (117.4 bits), Expect = 2.7e-27, P = 2.7e-27
 Identities = 64/131 (48%), Positives = 88/131 (67%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  + ++P R    + +
Sbjct:   933 AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMYSYPNRNWKDAGL 992

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   993 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:  1053 LITICREYIVG 1063

GO:0005179 "hormone activity" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005615 "extracellular space" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISO

GO:0030157 "pancreatic juice secretion" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

UNIPROTKB|F1PU93 COPA "Coatomer subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 318 (117.0 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 64/131 (48%), Positives = 87/131 (66%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct:   923 AGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPHRNWKDAGL 982

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   983 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1042

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:  1043 LITICREYIVG 1053

GO:0030126 "COPI vesicle coat" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|P53621 COPA "Coatomer subunit alpha" [Homo sapiens (taxid:9606)]

 Score = 318 (117.0 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 64/131 (48%), Positives = 87/131 (66%)

Query:    14 SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
             + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct:   933 AGSFETAMRLLHDQVGVIQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 992

Query:    74 ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                         DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct:   993 KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 1052

Query:   122 IINICKEYIVG 132
             +I IC+EYIVG
Sbjct:  1053 LITICREYIVG 1063

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005179 "hormone activity" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS;IDA

GO:0005615 "extracellular space" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0030157 "pancreatic juice secretion" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0048205 "COPI coating of Golgi vesicle" evidence=TAS

FB|FBgn0025725 alphaCop "alpha-coatomer protein" [Drosophila melanogaster (taxid:7227)]

 Score = 318 (117.0 bits), Expect = 3.6e-27, P = 3.6e-27
 Identities = 66/132 (50%), Positives = 92/132 (69%)

Query:    13 KSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTR------ 66
             K+ SFETAF+LLHDQ+GV NF P++ +FL +Y  SRT+Y+  P L  ++ +P R      
Sbjct:   942 KAGSFETAFRLLHDQLGVVNFQPFKTLFLQNYACSRTSYTANPNLQSLSGYPLRNYSETN 1001

Query:    67 -KVDRSSI-----DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAK 120
              K+ R ++     DL+A++Q  YQLTTSGKF +A+EK  ++LI IPLLVV TK +  EA+
Sbjct:  1002 IKLQRPAVGIKLNDLVARLQAGYQLTTSGKFSEAVEKFHSILISIPLLVVDTKLDAAEAQ 1061

Query:   121 QIINICKEYIVG 132
             Q++ IC EYIVG
Sbjct:  1062 QLLRICAEYIVG 1073

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISS;NAS

GO:0030126 "COPI vesicle coat" evidence=ISS;NAS

GO:0016192 "vesicle-mediated transport" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0010883 "regulation of lipid storage" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	133
pfam06957	421	pfam06957, COPI_C, Coatomer (COPI) alpha subunit C	1e-46

>gnl|CDD|219240 pfam06957, COPI_C, Coatomer (COPI) alpha subunit C-terminus

 Score =  155 bits (393), Expect = 1e-46
 Identities = 66/148 (44%), Positives = 91/148 (61%), Gaps = 21/148 (14%)

Query: 6   VTSESINKSS---------SFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPL 56
           V+    N SS         SFETA +LLHDQ+GV NF P++ +FL  Y  SRT+Y  LP 
Sbjct: 113 VSQIWPNNSSLAADHVAAGSFETAMRLLHDQLGVVNFAPFKDLFLQLYAGSRTSYRALPG 172

Query: 57  LAPVTAFPTRKVDRSSI------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLIC 104
           L  V+ +P R    S+              L  ++Q  YQLTT+GKF +A+EK R++L+ 
Sbjct: 173 LPSVSIYPERNWSESNSKNGPPAVGFKLSQLAKRLQAAYQLTTNGKFGEAVEKFRSILLS 232

Query: 105 IPLLVVTTKKEIEEAKQIINICKEYIVG 132
           IPL+VV +K+E+ EA+Q+I IC+EYIVG
Sbjct: 233 IPLIVVDSKQEVAEAQQLITICREYIVG 260

This family represents the C-terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit. Coatomer (COPI) is a large cytosolic protein complex which forms a coat around vesicles budding from the Golgi apparatus. Such coatomer-coated vesicles have been proposed to play a role in many distinct steps of intracellular transport. Note that many family members also contain the pfam04053 domain. Length = 421

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	100.0
KOG0292|consensus	1202		100.0
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	88.05
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	86.73
PF04212	69	MIT: MIT (microtubule interacting and transport) d	86.24
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	85.54
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	84.51
PF13371	73	TPR_9: Tetratricopeptide repeat	83.77
KOG0624|consensus	504		81.54
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	81.29

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=8.8e-49  Score=335.88  Aligned_cols=126  Identities=43%  Similarity=0.713  Sum_probs=110.8

Q ss_pred             ChHHHHhccCHHHHHHHHHhhcCcccccccHHHHHHHHhhhhhhccCCCCCCCccccCCCCC------------CCChHH
Q psy2692           7 TSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKV------------DRSSID   74 (133)
Q Consensus         7 ~~~~~~AAGsFe~A~~LLnrQiGivNf~PLk~~F~~~y~~s~~~~~~~p~lp~l~~~~~rn~------------~~~l~~   74 (133)
                      .++.|||||+||+||||||||+|||||+|||++|+++|.+||+|+|++|++|||..|++|||            ++++++
T Consensus       124 laadhvAAGsFetAm~LLnrQiGivnF~PLk~~Fl~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~  203 (422)
T PF06957_consen  124 LAADHVAAGSFETAMQLLNRQIGIVNFEPLKPLFLEVYQASRTYLPALPSLPPLPSYIRRNWDESNPKNGLPAIPLSLSS  203 (422)
T ss_dssp             SHHHHHHCT-HHHHHHHHHHHC-B---GGGHHHHHHHHCCTEEEE-SSTTTS-EEEEEBCTTTTSSSCCG-BB----HHH
T ss_pred             cHHHHHHhCCHHHHHHHHHHHhCccccHHHHHHHHHHHHhhceecccCCCCCCccccccCCccccccccCCCcCcCCHHH
Confidence            47889999999999999999999999999999999999999999999999999999999997            568999


Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhhhc
Q psy2692          75 LIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVG  132 (133)
Q Consensus        75 L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYila  132 (133)
                      |.++||.|||+||+|||+||++.||+|||+|||++|+|++|++|++|+|+||||||+|
T Consensus       204 L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilg  261 (422)
T PF06957_consen  204 LEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILG  261 (422)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999997

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>KOG0292|consensus

Probab=100.00  E-value=2.1e-36  Score=274.53  Aligned_cols=124  Identities=48%  Similarity=0.743  Sum_probs=118.5

Q ss_pred             hHHHHhccCHHHHHHHHHhhcCcccccccHHHHHHHHhhhhhhccCCCCCCCccccCCCCC------------CCChHHH
Q psy2692           8 SESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKV------------DRSSIDL   75 (133)
Q Consensus         8 ~~~~~AAGsFe~A~~LLnrQiGivNf~PLk~~F~~~y~~s~~~~~~~p~lp~l~~~~~rn~------------~~~l~~L   75 (133)
                      ++.+||||+||+||++|++|+|++||.|+|.+|+++|.+||+|++++|++| +.+++-|||            +.+++++
T Consensus       913 ~adhvaAGsf~tA~~lL~dqvgvv~f~p~Kt~fl~iy~~sR~~l~~~~~~~-~~~~~~R~~se~~~~~~~P~v~~~l~~l  991 (1202)
T KOG0292|consen  913 AADHVAAGSFETAMRLLHDQVGVVNFGPLKTHFLKIYAGSRTYLRATPCLP-VSLYPVRNWSETSSKQGLPAVGFKLSQL  991 (1202)
T ss_pred             hhhhhhcCchHHHHHHHHhhhcceecccHHhhhhhhccccceeccCCCCcc-cccccccccccchhhccCCcccccHHHH
Confidence            678999999999999999999999999999999999999999999999999 666777775            6779999


Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhhhc
Q psy2692          76 IAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVG  132 (133)
Q Consensus        76 ~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYila  132 (133)
                      ..+|++|||+||.|||.||+++||+||++||+++|+|++|++|++|+|.||||||+|
T Consensus       992 ~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~g 1048 (1202)
T KOG0292|consen  992 NKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVG 1048 (1202)
T ss_pred             HHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999997

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.05  E-value=0.94  Score=24.21  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=22.9

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHcc
Q psy2692          79 IQQCYQLTTSGKFVDAIEKLRNVLICIP  106 (133)
Q Consensus        79 Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~  106 (133)
                      ...|.-++..|++++|+..|+..+..-|
T Consensus         5 ~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    5 YYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            3568889999999999999999987644

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=86.73  E-value=0.6  Score=28.80  Aligned_cols=29  Identities=21%  Similarity=0.218  Sum_probs=25.1

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHccc
Q psy2692          79 IQQCYQLTTSGKFVDAIEKLRNVLICIPL  107 (133)
Q Consensus        79 Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l  107 (133)
                      +..|..++..|+|++|+..|+.++..-|-
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~   29 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPD   29 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            45788899999999999999999987764

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=86.24  E-value=4.3  Score=26.01  Aligned_cols=53  Identities=19%  Similarity=0.338  Sum_probs=38.9

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccC-hHHHHHHHHHHHHHHHhh
Q psy2692          76 IAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTT-KKEIEEAKQIINICKEYI  130 (133)
Q Consensus        76 ~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~-~~e~~e~~eli~icrEYi  130 (133)
                      ...++.|-+.=..|++++|++.+++-+..+.-..-.. .++..++  +-..+.+|+
T Consensus         6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~--l~~k~~~yl   59 (69)
T PF04212_consen    6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQA--LRQKMKEYL   59 (69)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHH--HHHHHHHHH
Confidence            3457888888889999999999999888776654443 3333333  778888886

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.54  E-value=1.7  Score=23.49  Aligned_cols=28  Identities=18%  Similarity=0.189  Sum_probs=23.0

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHcc
Q psy2692          79 IQQCYQLTTSGKFVDAIEKLRNVLICIP  106 (133)
Q Consensus        79 Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~  106 (133)
                      ...|.-.+..|++++|+..|+..|..-|
T Consensus         5 ~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    5 YNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4678888999999999999999987644

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=84.51  E-value=1.7  Score=22.95  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=24.1

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHcc
Q psy2692          78 KIQQCYQLTTSGKFVDAIEKLRNVLICIP  106 (133)
Q Consensus        78 ~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~  106 (133)
                      .++.|.-....|++++|++.|+.++..-|
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P   31 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP   31 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence            45667777778999999999999998765

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=83.77  E-value=2.5  Score=26.28  Aligned_cols=41  Identities=20%  Similarity=0.353  Sum_probs=32.1

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHH
Q psy2692          78 KIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQII  123 (133)
Q Consensus        78 ~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli  123 (133)
                      ....|.-++..|+|++|+..|..++..-|     +..+...++..|
T Consensus        32 ~~~~a~~~~~~g~~~~A~~~l~~~l~~~p-----~~~~~~~~~a~l   72 (73)
T PF13371_consen   32 WLQRARCLFQLGRYEEALEDLERALELSP-----DDPDARALRAML   72 (73)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHHHCC-----CcHHHHHHHHhc
Confidence            45678889999999999999999998877     455555555443

>KOG0624|consensus

Probab=81.54  E-value=6  Score=34.94  Aligned_cols=92  Identities=15%  Similarity=0.132  Sum_probs=61.8

Q ss_pred             HHHhccCHHHHHHHHHhhcCcccccccHHHHHHHHhhhhhhccCCCCCCCccccCCCCCCCChHHHHHHHHHHHHhcccC
Q psy2692          10 SINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCYQLTTSG   89 (133)
Q Consensus        10 ~~~AAGsFe~A~~LLnrQiGivNf~PLk~~F~~~y~~s~~~~~~~p~lp~l~~~~~rn~~~~l~~L~~~Lk~gyk~~t~g   89 (133)
                      ++.|.|+|..|+.--+.-|   +-.|  .....+|-++.+|+.-=-+-+.+. -+.|-...+.+..-.++|.|.=+.+.|
T Consensus        47 ~lla~~Q~sDALt~yHaAv---e~dp--~~Y~aifrRaT~yLAmGksk~al~-Dl~rVlelKpDF~~ARiQRg~vllK~G  120 (504)
T KOG0624|consen   47 ELLARGQLSDALTHYHAAV---EGDP--NNYQAIFRRATVYLAMGKSKAALQ-DLSRVLELKPDFMAARIQRGVVLLKQG  120 (504)
T ss_pred             HHHHhhhHHHHHHHHHHHH---cCCc--hhHHHHHHHHHHHhhhcCCccchh-hHHHHHhcCccHHHHHHHhchhhhhcc
Confidence            6789999999988777654   4444  344555556666653222222211 001111345566677999999999999


Q ss_pred             CHHHHHHHHHHHHHHccc
Q psy2692          90 KFVDAIEKLRNVLICIPL  107 (133)
Q Consensus        90 KF~eAl~~Fr~iL~~i~l  107 (133)
                      ++++|..-|+.+|..-|-
T Consensus       121 ele~A~~DF~~vl~~~~s  138 (504)
T KOG0624|consen  121 ELEQAEADFDQVLQHEPS  138 (504)
T ss_pred             cHHHHHHHHHHHHhcCCC
Confidence            999999999999998874

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.29  E-value=6.3  Score=26.32  Aligned_cols=59  Identities=14%  Similarity=0.107  Sum_probs=42.1

Q ss_pred             ChHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhh
Q psy2692          71 SSIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYI  130 (133)
Q Consensus        71 ~l~~L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYi  130 (133)
                      +++.-.+.+++|-..=+.|++++|+..+.+-|......+-...++ +.-.-+-..+.||+
T Consensus         2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~-~~k~~lr~k~~eyl   60 (75)
T cd02684           2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDA-QRKEALRQKVLQYV   60 (75)
T ss_pred             cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHH
Confidence            345556788999999999999999999999998887765332222 22223666777775

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
3mkr_B	320	Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomp		1e-33
3mv2_A	325	Crystal Structure Of A-Cop In Complex With E-Cop Le		7e-05
3mv3_A	325	Crystal Structure Of A-Cop In Complex With E-Cop Le		2e-04

>pdb|3MKR|B Chain B, Crystal Structure Of Yeast AlphaEPSILON-Cop Subcomplex Of The Copi Vesicular Coat Length = 320

Iteration: 1
 Score =  137 bits (346), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 87/131 (66%), Gaps = 12/131 (9%)
Query: 14  SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI 73
           + SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  +  +P R    + +
Sbjct: 29  AGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGL 88
Query: 74  ------------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                       DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q
Sbjct: 89  KNGVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQ 148
Query: 122 IINICKEYIVG 132
           +I IC+EYIVG
Sbjct: 149 LITICREYIVG 159

>pdb|3MV2|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop Length = 325

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 58/131 (44%), Gaps = 12/131 (9%)
Query: 14  SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRS-- 71
           + +F+ A + L  Q+GV    P ++ F N Y   RT   + P   P      R  D +  
Sbjct: 41  AGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVS 100
Query: 72  ---------SIDLI-AKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                     +D++  K+ + Y+     K   AIE  R  +  I LL+V   ++ + A +
Sbjct: 101 EDQILPYVPGLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHK 160
Query: 122 IINICKEYIVG 132
           I+   +EYI+G
Sbjct: 161 ILETAREYILG 171

>pdb|3MV3|A Chain A, Crystal Structure Of A-Cop In Complex With E-Cop Length = 325

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/131 (25%), Positives = 56/131 (42%), Gaps = 12/131 (9%)
Query: 14  SSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRS-- 71
           + +F+ A + L  Q+GV    P ++ F N Y   RT   + P   P      R  D +  
Sbjct: 41  AGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVS 100
Query: 72  ---------SIDLI-AKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQ 121
                     +D++  K  + Y+     K   AIE  R  +  I LL V   ++ + A +
Sbjct: 101 EDQILPYVPGLDVVNEKXNEGYKNFKLNKPDIAIECFREAIYRITLLXVDDAEDEKLAHK 160
Query: 122 IINICKEYIVG 132
           I+   +EYI+G
Sbjct: 161 ILETAREYILG 171

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	4e-33
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	3e-32

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 320

 Score =  117 bits (294), Expect = 4e-33
 Identities = 64/129 (49%), Positives = 86/129 (66%), Gaps = 12/129 (9%)

Query: 16  SFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKVDRSSI-- 73
           SFETA +LLHDQ+GV  F PY+Q+FL +Y + RT Y  LP L  +  +P R    + +  
Sbjct: 31  SFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKN 90

Query: 74  ----------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQII 123
                     DLI ++Q CYQLTT GKF +A+EK R++L+ +PLLVV  K+EI EA+Q+I
Sbjct: 91  GVPAVGLKLNDLIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLI 150

Query: 124 NICKEYIVG 132
            IC+EYIVG
Sbjct: 151 TICREYIVG 159

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A Length = 325

 Score =  114 bits (287), Expect = 3e-32
 Identities = 34/129 (26%), Positives = 54/129 (41%), Gaps = 12/129 (9%)

Query: 16  SFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTR----KVDRS 71
           +F+ A + L  Q+GV    P ++ F N Y   RT   + P   P      R     V   
Sbjct: 43  AFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSED 102

Query: 72  SI--------DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQII 123
            I         +  K+ + Y+     K   AIE  R  +  I LL+V   ++ + A +I+
Sbjct: 103 QILPYVPGLDVVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKIL 162

Query: 124 NICKEYIVG 132
              +EYI+G
Sbjct: 163 ETAREYILG 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	100.0
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	100.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	88.88
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	87.93
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	86.12
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	85.51
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	84.58
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	84.06
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	81.65
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	80.73

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=100.00  E-value=1.9e-48  Score=323.08  Aligned_cols=126  Identities=51%  Similarity=0.883  Sum_probs=123.2

Q ss_pred             ChHHHHhccCHHHHHHHHHhhcCcccccccHHHHHHHHhhhhhhccCCCCCCCccccCCCCC------------CCChHH
Q psy2692           7 TSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPLLAPVTAFPTRKV------------DRSSID   74 (133)
Q Consensus         7 ~~~~~~AAGsFe~A~~LLnrQiGivNf~PLk~~F~~~y~~s~~~~~~~p~lp~l~~~~~rn~------------~~~l~~   74 (133)
                      .+..|||||+||+||||||||+|+|||+|||++|+++|.+|++|+|++|++|||..|++|||            ++++++
T Consensus        22 laadhvaAGsFe~A~~lLnrQ~Givnf~PLk~~F~~~y~~s~~~l~~~~~~p~l~~~~~r~~~~~~~~~~lP~i~~~l~~  101 (320)
T 3mkr_B           22 LPVDHILAGSFETAMRLLHDQVGVTQFGPYKQLFLQTYARGRTTYQALPCLPSMYGYPNRNWKDAGLKNGVPAVGLKLND  101 (320)
T ss_dssp             CHHHHHHTTCHHHHHHHHHHHSCBCCCGGGHHHHHHHHTTSCEEECSSTTSCCEEECCBTTTTTCCSSSCCBCCCCCHHH
T ss_pred             cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhccCCCCCCcchhhhcCCccccccccCCCCcccCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999996            669999


Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhhhc
Q psy2692          75 LIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVG  132 (133)
Q Consensus        75 L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYila  132 (133)
                      |.++||+|||+||+|||+||++.||+|||++||++|+|++|++|++|+|++|||||+|
T Consensus       102 l~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYila  159 (320)
T 3mkr_B          102 LIQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVG  159 (320)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999997

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=100.00  E-value=3.2e-48  Score=322.15  Aligned_cols=125  Identities=25%  Similarity=0.338  Sum_probs=122.3

Q ss_pred             ChHHHHhccCHHHHHHHHHhhcCcccccccHHHHHHHHhhhhhhccCCC-CCCCccccCCCCC------------CCChH
Q psy2692           7 TSESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLP-LLAPVTAFPTRKV------------DRSSI   73 (133)
Q Consensus         7 ~~~~~~AAGsFe~A~~LLnrQiGivNf~PLk~~F~~~y~~s~~~~~~~p-~lp~l~~~~~rn~------------~~~l~   73 (133)
                      .+..+||||+||+||||||||+|+|||+|||++|+++|.+|++|+|++| ++||+..|++|||            + +++
T Consensus        34 laadhvAAGsFetAm~lLnrQvGivnf~PLk~~F~~~y~~s~~~l~~~~~~lp~l~~~~~r~~~e~~~~~~lP~i~-~l~  112 (325)
T 3mv2_A           34 LPAVLVAAGAFDAAVQALSKQVGVVKLEPLKKYFTNIYEGCRTYIPSTPCELPAQLGYVRAYDDTVSEDQILPYVP-GLD  112 (325)
T ss_dssp             SHHHHHHTTCHHHHHHHHHHHHCBCCCGGGHHHHHHHHHHTEEEECCSSTTSCCEEEECBSSCSSSCGGGCCBCCC-CHH
T ss_pred             cHHHHHHccCHHHHHHHHHHHhCccCchhhHHHHHHHHHHHhhhcccCCCCCCcchhhhcCCccccccccCCCCCC-CHH
Confidence            4789999999999999999999999999999999999999999999999 9999999999996            6 899


Q ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhhhc
Q psy2692          74 DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYIVG  132 (133)
Q Consensus        74 ~L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYila  132 (133)
                      +|.++||+|||+||+|||+||++.||+|||.|||++|+|++|++|++|+|+||||||+|
T Consensus       113 ~L~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYila  171 (325)
T 3mv2_A          113 VVNEKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILG  171 (325)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999997

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=88.88  E-value=1.5  Score=27.84  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             hHHHHhccCHHHHHHHHHhhcCcccccccHH--HHHH--HHhhhhhhccCCCCCCCccccCCCCCCCChHHHHHHHHHHH
Q psy2692           8 SESINKSSSFETAFKLLHDQIGVKNFLPYRQ--MFLN--SYLQSRTAYSTLPLLAPVTAFPTRKVDRSSIDLIAKIQQCY   83 (133)
Q Consensus         8 ~~~~~AAGsFe~A~~LLnrQiGivNf~PLk~--~F~~--~y~~s~~~~~~~p~lp~l~~~~~rn~~~~l~~L~~~Lk~gy   83 (133)
                      +..+...|+|+.|...+++-+..-.-.|..+  ++.-  +|....-+-.++..   +.-.+..+ |-+..........|.
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~---~~~~~~~~-p~~~~~~~~~~~la~   84 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQ---FRDLVSRY-PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHH---HHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHH---HHHHHHHC-CCCcccHHHHHHHHH
Confidence            3567789999999999998665544444322  1111  11111100000000   00000000 111101122455566


Q ss_pred             HhcccCCHHHHHHHHHHHHHHcc
Q psy2692          84 QLTTSGKFVDAIEKLRNVLICIP  106 (133)
Q Consensus        84 k~~t~gKF~eAl~~Fr~iL~~i~  106 (133)
                      -+...|++++|+..|+.++..-|
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p  107 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYP  107 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCC
Confidence            67789999999999999998776

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=87.93  E-value=1.2  Score=29.61  Aligned_cols=54  Identities=9%  Similarity=0.187  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhh
Q psy2692          76 IAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYI  130 (133)
Q Consensus        76 ~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYi  130 (133)
                      .+.++.|-+.=+.|++++|+..+.+.+-.....+-...++ ..-..+-..|.||+
T Consensus        17 ~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~-~~k~~lr~K~~eYl   70 (86)
T 4a5x_A           17 ATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDN-TKRCNLREKISKYM   70 (86)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHH
Confidence            4467999999999999999999999997766554332222 22233666888886

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=86.12  E-value=4.6  Score=25.33  Aligned_cols=46  Identities=13%  Similarity=0.011  Sum_probs=33.5

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHH
Q psy2692          79 IQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINIC  126 (133)
Q Consensus        79 Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~ic  126 (133)
                      ..-|.-+...|++++|+..|+..+...+-.  .+.....++.+++...
T Consensus        45 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~~~~~~~~l~~~l~~~   90 (100)
T 3ma5_A           45 YHLGKLYERLDRTDDAIDTYAQGIEVAREE--GTQKDLSELQDAKLKA   90 (100)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhhhcC--CchhHHHHHHHHHHHc
Confidence            344666678899999999999999876643  4556666666666544

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=85.51  E-value=1.6  Score=30.65  Aligned_cols=58  Identities=16%  Similarity=0.243  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhh
Q psy2692          73 IDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYI  130 (133)
Q Consensus        73 ~~L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYi  130 (133)
                      +.-.+.++.|...=+.|++++|+..+...+..+...+-....+...-..+-..|.||+
T Consensus        16 ~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl   73 (117)
T 2cpt_A           16 QKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYL   73 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence            3445567888888899999999999999998766654322112222233667788886

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=84.58  E-value=7  Score=27.20  Aligned_cols=42  Identities=12%  Similarity=-0.050  Sum_probs=31.3

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHH
Q psy2692          78 KIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIIN  124 (133)
Q Consensus        78 ~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~  124 (133)
                      ..+.|.-+...|++++|+..|+..+..-|     +.+-.++++++++
T Consensus       107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~~-----~~~~~~~A~~ll~  148 (151)
T 3gyz_A          107 VFHTGQCQLRLKAPLKAKECFELVIQHSN-----DEKLKIKAQSYLD  148 (151)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CHHHHHHHHHHHH
Confidence            35667778899999999999999999875     3344555555554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=84.06  E-value=1.9  Score=28.64  Aligned_cols=33  Identities=9%  Similarity=0.109  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHccc
Q psy2692          75 LIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPL  107 (133)
Q Consensus        75 L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l  107 (133)
                      -...-+.|-.++..|+|++|+..|+..|..-|-
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~   45 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE   45 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            334557799999999999999999999987764

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=81.65  E-value=4.5  Score=27.00  Aligned_cols=56  Identities=11%  Similarity=0.168  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhh
Q psy2692          74 DLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYI  130 (133)
Q Consensus        74 ~L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYi  130 (133)
                      .-.+.++.|-+.=+.|++++|+..+..-+..+...+-...++. .-.-+-..|.||+
T Consensus        14 ~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~-~k~~l~~K~~eYl   69 (93)
T 1wfd_A           14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESS-KRCVLRTKISGYM   69 (93)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHH
Confidence            3445678899999999999999999999887766544332222 2333777888886

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=80.73  E-value=3.8  Score=26.57  Aligned_cols=58  Identities=21%  Similarity=0.186  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHHHHhh
Q psy2692          72 SIDLIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINICKEYI  130 (133)
Q Consensus        72 l~~L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~icrEYi  130 (133)
                      ++.-.+.++.|.+.=+.|++++|+..+.+.+......+-...+ ...-..+-..|.||+
T Consensus        10 l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~-~~~k~~l~~k~~eYl   67 (85)
T 2v6x_A           10 LTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKN-PKSKDLIRAKFTEYL   67 (85)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHH
Confidence            3344556788888889999999999999998876655433222 222334677788886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	92.52
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	91.88
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	91.56
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	88.93
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	88.08
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	83.71
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	82.48
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	82.44

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=92.52  E-value=0.25  Score=33.21  Aligned_cols=48  Identities=13%  Similarity=0.180  Sum_probs=38.0

Q ss_pred             HHHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHH
Q psy2692          78 KIQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINI  125 (133)
Q Consensus        78 ~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~i  125 (133)
                      .-..|-.+|..|+|.+|+..|+..|..++.....+.++......+...
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~   65 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLA   65 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHH
Confidence            346799999999999999999999999888776666666555555443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.089  Score=33.67  Aligned_cols=34  Identities=12%  Similarity=0.074  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHcccc
Q psy2692          75 LIAKIQQCYQLTTSGKFVDAIEKLRNVLICIPLL  108 (133)
Q Consensus        75 L~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~  108 (133)
                      +.+....|.+++..|++++|+..|+.+|..-|-.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~   36 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHN   36 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcc
Confidence            3445678999999999999999999999876654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.56  E-value=0.39  Score=32.40  Aligned_cols=48  Identities=10%  Similarity=0.157  Sum_probs=39.3

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHcccccccChHHHHHHHHHHHHH
Q psy2692          79 IQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTKKEIEEAKQIINIC  126 (133)
Q Consensus        79 Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~~e~~e~~eli~ic  126 (133)
                      -..|-.+|..|++.+|+..|+..|..++-....+.++......+...+
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~   64 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLAS   64 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHH
Confidence            366889999999999999999999999988777777766666665444

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=88.93  E-value=0.82  Score=30.12  Aligned_cols=35  Identities=11%  Similarity=0.021  Sum_probs=29.4

Q ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHcccccccCh
Q psy2692          79 IQQCYQLTTSGKFVDAIEKLRNVLICIPLLVVTTK  113 (133)
Q Consensus        79 Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~vv~~~  113 (133)
                      -..|-++|..|+|.+|+..|+..|..++.....+.
T Consensus        21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~   55 (153)
T d2fbna1          21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDD   55 (153)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhh
Confidence            36899999999999999999999988876654443

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.08  E-value=0.27  Score=32.59  Aligned_cols=32  Identities=19%  Similarity=0.184  Sum_probs=27.7

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHHcccc
Q psy2692          77 AKIQQCYQLTTSGKFVDAIEKLRNVLICIPLL  108 (133)
Q Consensus        77 ~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l~  108 (133)
                      +..+.|-.++..|+|++|+..|+..|..-|-.
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~   37 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLV   37 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCC
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            34577999999999999999999999887754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.71  E-value=1.1  Score=29.42  Aligned_cols=93  Identities=10%  Similarity=-0.011  Sum_probs=51.7

Q ss_pred             HHHHhccCHHHHHHHHHhhcCcccccccHHHHHHHHhhhhhhccCCCC-CCCccccCCCCCCCChHHHHHHHHHHHHhcc
Q psy2692           9 ESINKSSSFETAFKLLHDQIGVKNFLPYRQMFLNSYLQSRTAYSTLPL-LAPVTAFPTRKVDRSSIDLIAKIQQCYQLTT   87 (133)
Q Consensus         9 ~~~~AAGsFe~A~~LLnrQiGivNf~PLk~~F~~~y~~s~~~~~~~p~-lp~l~~~~~rn~~~~l~~L~~~Lk~gyk~~t   87 (133)
                      -.++..|+|+.|+..+++=+-+   .|--+....--..+...+.-... +....--+    .+..+......+-|.-+..
T Consensus        12 n~~~~~g~~~~Ai~~~~kal~~---~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al----~l~p~~~~a~~~lg~~~~~   84 (201)
T d2c2la1          12 NRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRAL----ELDGQSVKAHFFLGQCQLE   84 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT----TSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH----HhCCCcHHHHHHHHHHHHH
Confidence            3678999999999999996644   34333322211111111111000 00000001    1111123334566777888


Q ss_pred             cCCHHHHHHHHHHHHHHcccc
Q psy2692          88 SGKFVDAIEKLRNVLICIPLL  108 (133)
Q Consensus        88 ~gKF~eAl~~Fr~iL~~i~l~  108 (133)
                      .|++++|+..|+..+..-|-.
T Consensus        85 l~~~~~A~~~~~~al~l~p~~  105 (201)
T d2c2la1          85 MESYDEAIANLQRAYSLAKEQ  105 (201)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCccc
Confidence            899999999999999877743

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=82.48  E-value=0.79  Score=30.10  Aligned_cols=31  Identities=10%  Similarity=0.156  Sum_probs=26.9

Q ss_pred             HHHHHHHHhcccCCHHHHHHHHHHHHHHccc
Q psy2692          77 AKIQQCYQLTTSGKFVDAIEKLRNVLICIPL  107 (133)
Q Consensus        77 ~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l  107 (133)
                      ..+..|...+..|+|++|+..|+..|..-|=
T Consensus        11 ~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~   41 (156)
T d2hr2a1          11 LALSDAQRQLVAGEYDEAAANCRRAMEISHT   41 (156)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhChh
Confidence            3577899999999999999999999986654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.44  E-value=0.94  Score=29.56  Aligned_cols=32  Identities=13%  Similarity=0.063  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHHccc
Q psy2692          76 IAKIQQCYQLTTSGKFVDAIEKLRNVLICIPL  107 (133)
Q Consensus        76 ~~~Lk~gyk~~t~gKF~eAl~~Fr~iL~~i~l  107 (133)
                      .+..+.|-.++..|+|++|+..|+.+|..-|-
T Consensus        11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~   42 (159)
T d1a17a_          11 EELKTQANDYFKAKDYENAIKFYSQAIELNPS   42 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHhhhccccchh
Confidence            44668899999999999999999999987664