Psyllid ID: psy2694

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260--
Protein Sequence
MSKRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLSFCIKSGIPSFIKSGSSPFITYFNGIFPVIP
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHcccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccHHHHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHcccccccccccccccccccHHHHHcccHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcHHHHHccccccHHHHHHHHcccccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHccHHHccHHccccccccHHHHHHHHHHHHHHHcHHHEEccccccEEccccccEEEEEcccccccc
Coil and Loop (DISEMBL)
mskrsdidfnpyntdEFLTRFLYARKMNVDKSFDLLCNYITYRtnhaeffdnltVSNRQIQCAikdglpgvlsnrdrkgRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDwgnltlrqtsnninSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLSFCIksgipsfiksgsspfityfngifpvip
Flexible Loop (DISEMBL)
mskrsdidfnpyntDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIkdglpgvlsnrdrKGRRILVffannwdhtryTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLSFCIKSGipsfiksgsspfITYFNGIFPVIP
Low Complexity Region (SEG)
MSKRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIltldnllldtqnqMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNfssfiksgfssfiksgissfiksgissfiksDLssfmksgfssfiksgfssriksgfssriksgfssCIKSSLSFCIKSGIPSFIKSGSSPFITYFNGIFPVIP
Disordered region (IsUnstruct)
********FNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLSFCIKSGIPSFIKSGSSPFITYFNGIFPVI*
Disordered Region (DISOPRED)
***RSD*DFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSS*************************GIFPVIP
Disordered Region (DISEMBL)
MSKRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLSFCIKSGIPSFIKSGSSPFITYFNGIFPVIP
Disordered Region (DISPRO)
****SDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLSFCIKSGIPSFIKSGSSPFITYFNGIFPVIP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLSFCIKSGIPSFIKSGSSPFITYFNGIFPVIP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	262	2.2.26 [Sep-21-2011]
Q5SPP0	329	Clavesin-2 OS=Danio rerio	yes	N/A	0.507	0.404	0.462	1e-28
A6JUQ6	327	Clavesin-2 OS=Rattus norv	yes	N/A	0.507	0.406	0.425	1e-25
Q95KF7	327	Clavesin-2 OS=Macaca fasc	N/A	N/A	0.507	0.406	0.425	1e-25
Q5SYC1	327	Clavesin-2 OS=Homo sapien	yes	N/A	0.507	0.406	0.425	1e-25
Q8BG92	327	Clavesin-2 OS=Mus musculu	yes	N/A	0.507	0.406	0.425	2e-25
Q5M7E1	332	Clavesin-1 OS=Xenopus lae	N/A	N/A	0.507	0.400	0.432	9e-25
A6JFQ6	354	Clavesin-1 OS=Rattus norv	no	N/A	0.507	0.375	0.417	8e-24
Q9D4C9	354	Clavesin-1 OS=Mus musculu	no	N/A	0.507	0.375	0.417	8e-24
Q8IUQ0	354	Clavesin-1 OS=Homo sapien	no	N/A	0.507	0.375	0.417	1e-23
Q5RCA6	354	Clavesin-1 OS=Pongo abeli	no	N/A	0.507	0.375	0.417	1e-23

>sp|Q5SPP0|CLVS2_DANRE Clavesin-2 OS=Danio rerio GN=clvs2 PE=2 SV=1

 Score =  126 bits (317), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 86/134 (64%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK N  ++F LL  Y  YR  + + F NL  ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PGVLSN DR GR+ILV FA NWD +RYT   I ++++L+L+ ++ D + Q+NG +
Sbjct: 100 LKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFVDILRAILLSLEAMIEDPELQVNGFV 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).
Danio rerio (taxid: 7955)

>sp|A6JUQ6|CLVS2_RAT Clavesin-2 OS=Rattus norvegicus GN=Clvs2 PE=1 SV=1

 Score =  117 bits (292), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++L+L+ ++ D + Q+NG +
Sbjct: 100 LKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFV 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q95KF7|CLVS2_MACFA Clavesin-2 OS=Macaca fascicularis GN=CLVS2 PE=2 SV=2

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++L+L+ ++ D + Q+NG +
Sbjct: 100 LKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFV 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Macaca fascicularis (taxid: 9541)

>sp|Q5SYC1|CLVS2_HUMAN Clavesin-2 OS=Homo sapiens GN=CLVS2 PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++L+L+ ++ D + Q+NG +
Sbjct: 100 LKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFV 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|Q8BG92|CLVS2_MOUSE Clavesin-2 OS=Mus musculus GN=Clvs2 PE=2 SV=1

 Score =  116 bits (290), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++L+L+ ++ D + Q+NG +
Sbjct: 100 LKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGFV 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|Q5M7E1|CLVS1_XENLA Clavesin-1 OS=Xenopus laevis GN=clvs1 PE=2 SV=1

 Score =  114 bits (284), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 58/134 (43%), Positives = 82/134 (61%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK N  ++F LL  Y  YR  + + F NL   +  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFNQMEAFRLLAQYFQYRQLNLDMFKNLKADDPGIKRA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           + DG PGVL NRD  GR+IL+ FA NWD +R +   I ++++L+L+ L+ D + Q+NG I
Sbjct: 100 LMDGFPGVLENRDHYGRKILLLFAANWDQSRNSFVDILRAILLSLEVLIEDQELQINGFI 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N + +Q S
Sbjct: 160 LIIDWSNFSFKQAS 173

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Xenopus laevis (taxid: 8355)

>sp|A6JFQ6|CLVS1_RAT Clavesin-1 OS=Rattus norvegicus GN=Clvs1 PE=1 SV=1

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK +   +F LL  Y  YR  + + F N    +  I+ A
Sbjct: 63  RPDIGFL-RTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRA 121

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           + DG PGVL NRD  GR+IL+ FA NWD +R +   I ++++L+L+ L+ D + Q+NG I
Sbjct: 122 LIDGFPGVLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFI 181

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N + +Q S
Sbjct: 182 LIIDWSNFSFKQAS 195

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Rattus norvegicus (taxid: 10116)

>sp|Q9D4C9|CLVS1_MOUSE Clavesin-1 OS=Mus musculus GN=Clvs1 PE=2 SV=1

 Score =  110 bits (276), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK +   +F LL  Y  YR  + + F N    +  I+ A
Sbjct: 63  RPDIGFL-RTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRA 121

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           + DG PGVL NRD  GR+IL+ FA NWD +R +   I ++++L+L+ L+ D + Q+NG I
Sbjct: 122 LIDGFPGVLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFI 181

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N + +Q S
Sbjct: 182 LIIDWSNFSFKQAS 195

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Mus musculus (taxid: 10090)

>sp|Q8IUQ0|CLVS1_HUMAN Clavesin-1 OS=Homo sapiens GN=CLVS1 PE=1 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK +   +F LL  Y  YR  + + F N    +  I+ A
Sbjct: 63  RPDIGFL-RTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRA 121

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           + DG PGVL NRD  GR+IL+ FA NWD +R +   I ++++L+L+ L+ D + Q+NG I
Sbjct: 122 LIDGFPGVLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFI 181

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N + +Q S
Sbjct: 182 LIIDWSNFSFKQAS 195

Required for normal morphology of late endosomes and/or lysosomes in neurons (By similarity). Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Homo sapiens (taxid: 9606)

>sp|Q5RCA6|CLVS1_PONAB Clavesin-1 OS=Pongo abelii GN=CLVS1 PE=2 SV=1

 Score =  110 bits (275), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK +   +F LL  Y  YR  + + F N    +  I+ A
Sbjct: 63  RPDIGFL-RTDDAFILRFLRARKFHQADAFRLLAQYFQYRQLNLDMFKNFKADDPGIKRA 121

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           + DG PGVL NRD  GR+IL+ FA NWD +R +   I ++++L+L+ L+ D + Q+NG I
Sbjct: 122 LIDGFPGVLENRDHYGRKILLLFAANWDQSRNSFTDILRAILLSLEVLIEDPELQINGFI 181

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N + +Q S
Sbjct: 182 LIIDWSNFSFKQAS 195

Required for normal morphology of late endosomes and/or lysosomes in neurons. Binds phosphatidylinositol 3,5-bisphosphate (PtdIns(3,5)P2).

Pongo abelii (taxid: 9601)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
158297024	262	AGAP008133-PA [Anopheles gambiae str. PE	0.526	0.526	0.514	1e-34
312381254	372	hypothetical protein AND_06478 [Anophele	0.526	0.370	0.514	2e-34
157110946	358	retinaldehyde binding protein [Aedes aeg	0.526	0.385	0.5	3e-34
170029318	360	cellular retinaldehyde-binding protein [	0.526	0.383	0.492	1e-33
47205334	396	unnamed protein product [Tetraodon nigro	0.507	0.335	0.470	2e-27
47204478	296	unnamed protein product [Tetraodon nigro	0.511	0.452	0.466	2e-27
47209308	403	unnamed protein product [Tetraodon nigro	0.511	0.332	0.466	3e-27
348541815	333	PREDICTED: clavesin-2-like [Oreochromis	0.507	0.399	0.470	5e-27
410916103	333	PREDICTED: clavesin-2-like [Takifugu rub	0.507	0.399	0.470	5e-27
70887737	329	clavesin-2 [Danio rerio] gi|75570919|sp|	0.507	0.404	0.462	8e-27

>gi|158297024|ref|XP_317327.4| AGAP008133-PA [Anopheles gambiae str. PEST] gi|157014996|gb|EAA12417.4| AGAP008133-PA [Anopheles gambiae str. PEST]

 Score =  152 bits (385), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 12  YNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGV 71
           +  DEFL RFLYARK NV+++F L+ NY  YR  +A     L+V +  IQ A++DG PGV
Sbjct: 33  FQDDEFLFRFLYARKFNVNEAFQLIINYHAYRQRNAAILQRLSVLDETIQIALRDGFPGV 92

Query: 72  LSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNL 131
           L NRDR+GR++LVFF  NWD+  Y+L  +Y++++LT++ LL D QNQ NG I IVDW N 
Sbjct: 93  LPNRDRRGRKVLVFFTANWDYASYSLVTVYRAMLLTVEKLLEDKQNQANGFIAIVDWTNF 152

Query: 132 TLRQTSNNINSFKQVRTMLE 151
           T RQ+S N+N  K ++ M+E
Sbjct: 153 TFRQSS-NLNP-KVLKLMIE 170

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312381254|gb|EFR27044.1| hypothetical protein AND_06478 [Anopheles darlingi]

 Score =  152 bits (383), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 99/140 (70%), Gaps = 2/140 (1%)

Query: 12  YNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGV 71
           +  DEFL RFLYARK NV+++F L+ NY  YR  +A     L+V +  IQ A++DG PGV
Sbjct: 60  FQDDEFLFRFLYARKFNVNEAFQLIINYHAYRQRNAVLLQRLSVLDETIQIALRDGFPGV 119

Query: 72  LSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNL 131
           L NRDR+GR++LVFF  NWD+  Y+L  +Y++++LT++ LL D QNQ NG I IVDW N 
Sbjct: 120 LPNRDRRGRKVLVFFTANWDYASYSLVTVYRAMLLTIEKLLEDKQNQANGFIAIVDWTNF 179

Query: 132 TLRQTSNNINSFKQVRTMLE 151
           T RQ+S N+N  K ++ M+E
Sbjct: 180 TFRQSS-NLNP-KVLKLMIE 197

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157110946|ref|XP_001651322.1| retinaldehyde binding protein [Aedes aegypti] gi|108878569|gb|EAT42794.1| AAEL005701-PA [Aedes aegypti]

 Score =  151 bits (381), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/140 (50%), Positives = 98/140 (70%), Gaps = 2/140 (1%)

Query: 12  YNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGV 71
           +  DEFL RFLYARK NV+ +F L+ NY  YR  +      L+V +  IQ A++DG PGV
Sbjct: 59  FQDDEFLLRFLYARKFNVNDAFQLVINYHAYRQRNGPLLQRLSVLDENIQLALRDGFPGV 118

Query: 72  LSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNL 131
           L NRDR+GR++L+F A NWD++ Y+L  +Y++++L+L+ LL D QNQ NG I IVDW N 
Sbjct: 119 LPNRDRRGRKVLIFLAGNWDYSSYSLVTVYRAMLLSLEKLLEDKQNQANGFIAIVDWTNF 178

Query: 132 TLRQTSNNINSFKQVRTMLE 151
           T RQ+S N+N  K ++ M+E
Sbjct: 179 TFRQSS-NLNP-KVLKLMIE 196

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170029318|ref|XP_001842540.1| cellular retinaldehyde-binding protein [Culex quinquefasciatus] gi|167881643|gb|EDS45026.1| cellular retinaldehyde-binding protein [Culex quinquefasciatus]

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 98/140 (70%), Gaps = 2/140 (1%)

Query: 12  YNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGV 71
           +  DEFL RFLYARK NV+ +F L+ NY  YR  +      L+V +  IQ A++DG PGV
Sbjct: 60  FQDDEFLFRFLYARKFNVNDAFQLVINYHAYRQRNGSLLQRLSVLDENIQLALRDGFPGV 119

Query: 72  LSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNL 131
           L NRDR+GR++L+F A NWD++ Y+L  +Y++++L+++ LL D QNQ NG I IVDW N 
Sbjct: 120 LPNRDRRGRKVLIFLAANWDYSSYSLVTVYRAMLLSIEKLLEDKQNQANGFIAIVDWTNF 179

Query: 132 TLRQTSNNINSFKQVRTMLE 151
           T RQ+S N+N  K ++ M+E
Sbjct: 180 TFRQSS-NLNP-KVLKLMIE 197

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|47205334|emb|CAF93856.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  129 bits (323), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 87/134 (64%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK N  ++F LL  Y  YR  + + F NL  ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PGVLSN DR GR+ILV FA NWD +RYT   I ++++L+L++++ D + Q+NG I
Sbjct: 100 LKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFVDILRAILLSLESMIEDPELQVNGFI 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47204478|emb|CAF93279.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  128 bits (322), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 87/135 (64%), Gaps = 1/135 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK N  ++F LL  Y  YR  + + F NL  ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PGVLSN DR GR+ILV FA NWD +RYT   I ++++L+L++++ D + Q+NG I
Sbjct: 100 LKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFVDIVRAILLSLESMIEDPELQVNGFI 159

Query: 124 FIVDWGNLTLRQTSN 138
            I+DW N T +Q S 
Sbjct: 160 LIIDWSNFTFKQASK 174

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47209308|emb|CAF90731.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  127 bits (320), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 63/135 (46%), Positives = 87/135 (64%), Gaps = 1/135 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK N  ++F LL  Y  YR  + + F NL  ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PGVLSN DR GR+ILV FA NWD +RYT   I ++++L+L++++ D + Q+NG I
Sbjct: 100 LKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFVDILRAILLSLESMIEDPELQVNGFI 159

Query: 124 FIVDWGNLTLRQTSN 138
            I+DW N T +Q S 
Sbjct: 160 LIIDWSNFTFKQASK 174

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348541815|ref|XP_003458382.1| PREDICTED: clavesin-2-like [Oreochromis niloticus]

 Score =  127 bits (319), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 87/134 (64%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK N  ++F LL  Y  YR  + + F NL  ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PGVLSN DR GR+ILV FA NWD +RYT   I ++++L+L++++ D + Q+NG I
Sbjct: 100 LKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFVDILRAILLSLESMIEDPELQVNGFI 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410916103|ref|XP_003971526.1| PREDICTED: clavesin-2-like [Takifugu rubripes]

 Score =  127 bits (318), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 87/134 (64%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK N  ++F LL  Y  YR  + + F NL  ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PGVLSN DR GR+ILV FA NWD +RYT   I ++++L+L++++ D + Q+NG I
Sbjct: 100 LKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFVDILRAILLSLESMIEDPELQVNGFI 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Source: Takifugu rubripes

Species: Takifugu rubripes

Genus: Takifugu

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|70887737|ref|NP_001020716.1| clavesin-2 [Danio rerio] gi|75570919|sp|Q5SPP0.1|CLVS2_DANRE RecName: Full=Clavesin-2; AltName: Full=Retinaldehyde-binding protein 1-like 2 gi|94574152|gb|AAI16476.1| Si:ch211-199i15.4 [Danio rerio]

 Score =  126 bits (317), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 62/134 (46%), Positives = 86/134 (64%), Gaps = 1/134 (0%)

Query: 4   RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCA 63
           R DI F     D F+ RFL ARK N  ++F LL  Y  YR  + + F NL  ++  I+ A
Sbjct: 41  RPDIGFL-RTDDAFILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQA 99

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +KDG PGVLSN DR GR+ILV FA NWD +RYT   I ++++L+L+ ++ D + Q+NG +
Sbjct: 100 LKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFVDILRAILLSLEAMIEDPELQVNGFV 159

Query: 124 FIVDWGNLTLRQTS 137
            I+DW N T +Q S
Sbjct: 160 LIIDWSNFTFKQAS 173

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	262
ZFIN|ZDB-GENE-041014-313	329	clvs2 "clavesin 2" [Danio reri	0.503	0.401	0.437	9.7e-25
UNIPROTKB|E1BHP4	327	CLVS2 "Uncharacterized protein	0.503	0.403	0.4	4.3e-22
UNIPROTKB|F1PL15	327	CLVS2 "Uncharacterized protein	0.503	0.403	0.4	4.3e-22
UNIPROTKB|Q5SYC1	327	CLVS2 "Clavesin-2" [Homo sapie	0.503	0.403	0.4	4.3e-22
UNIPROTKB|F1S2T8	327	CLVS2 "Uncharacterized protein	0.503	0.403	0.4	4.3e-22
UNIPROTKB|Q95KF7	327	CLVS2 "Clavesin-2" [Macaca fas	0.503	0.403	0.4	4.3e-22
MGI|MGI:2443223	327	Clvs2 "clavesin 2" [Mus muscul	0.503	0.403	0.4	4.3e-22
RGD|1306801	327	Clvs2 "clavesin 2" [Rattus nor	0.503	0.403	0.4	4.3e-22
UNIPROTKB|E1C6S0	327	CLVS2 "Uncharacterized protein	0.503	0.403	0.4	5.5e-22
UNIPROTKB|Q5M7E1	332	clvs1 "Clavesin-1" [Xenopus la	0.503	0.397	0.4	1.5e-21

ZFIN|ZDB-GENE-041014-313 clvs2 "clavesin 2" [Danio rerio (taxid:7955)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 59/135 (43%), Positives = 79/135 (58%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK N  ++F LL  Y  YR  + + F NL  ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFNHFEAFRLLAQYFEYRQQNLDMFKNLKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PGVLSN DR GR+ILV FA NWD +RYT   I ++++             +NG 
Sbjct:    99 ALKDGFPGVLSNLDRYGRKILVLFAANWDQSRYTFVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0006810 "transport" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0005768 "endosome" evidence=IEA;ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

UNIPROTKB|E1BHP4 CLVS2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++             +NG 
Sbjct:    99 ALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|F1PL15 CLVS2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++             +NG 
Sbjct:    99 ALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q5SYC1 CLVS2 "Clavesin-2" [Homo sapiens (taxid:9606)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++             +NG 
Sbjct:    99 ALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0005215 "transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0007040 "lysosome organization" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

UNIPROTKB|F1S2T8 CLVS2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++             +NG 
Sbjct:    99 ALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005215 "transporter activity" evidence=IEA

UNIPROTKB|Q95KF7 CLVS2 "Clavesin-2" [Macaca fascicularis (taxid:9541)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++             +NG 
Sbjct:    99 ALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

MGI|MGI:2443223 Clvs2 "clavesin 2" [Mus musculus (taxid:10090)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++             +NG 
Sbjct:    99 ALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0005215 "transporter activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISO

RGD|1306801 Clvs2 "clavesin 2" [Rattus norvegicus (taxid:10116)]

 Score = 257 (95.5 bits), Expect = 4.3e-22, P = 4.3e-22
 Identities = 54/135 (40%), Positives = 77/135 (57%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK +  ++F LL  Y  YR  + + F +   ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFHHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++             +NG 
Sbjct:    99 ALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0007040 "lysosome organization" evidence=IMP

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

UNIPROTKB|E1C6S0 CLVS2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 256 (95.2 bits), Expect = 5.5e-22, P = 5.5e-22
 Identities = 54/135 (40%), Positives = 76/135 (56%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK    ++F LL  Y  YR  + + F +   ++  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFQHFEAFRLLAQYFEYRQQNLDMFKSFKATDPGIKQ 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+KDG PG L+N D  GR+ILV FA NWD +RYTL  I ++++             +NG 
Sbjct:    99 ALKDGFPGGLANLDHYGRKILVLFAANWDQSRYTLVDILRAILLSLEAMIEDPELQVNGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             + I+DW N T +Q S
Sbjct:   159 VLIIDWSNFTFKQAS 173

GO:0005215 "transporter activity" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IEA

UNIPROTKB|Q5M7E1 clvs1 "Clavesin-1" [Xenopus laevis (taxid:8355)]

 Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 54/135 (40%), Positives = 75/135 (55%)

Query:     4 RSDIDFNPYNTDE-FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQC 62
             R DI F    TD+ F+ RFL ARK N  ++F LL  Y  YR  + + F NL   +  I+ 
Sbjct:    41 RPDIGF--LRTDDAFILRFLRARKFNQMEAFRLLAQYFQYRQLNLDMFKNLKADDPGIKR 98

Query:    63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGL 122
             A+ DG PGVL NRD  GR+IL+ FA NWD +R +   I ++++             +NG 
Sbjct:    99 ALMDGFPGVLENRDHYGRKILLLFAANWDQSRNSFVDILRAILLSLEVLIEDQELQINGF 158

Query:   123 IFIVDWGNLTLRQTS 137
             I I+DW N + +Q S
Sbjct:   159 ILIIDWSNFSFKQAS 173

GO:0005768 "endosome" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

GO:0007040 "lysosome organization" evidence=ISS

GO:0030136 "clathrin-coated vesicle" evidence=ISS

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	262
smart01100	48	smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom	1e-07
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	4e-06
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	5e-06
pfam03765	48	pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma	5e-06
PTZ00266	1021	PTZ00266, PTZ00266, NIMA-related protein kinase; P	0.003

>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 14/30 (46%), Positives = 19/30 (63%)

Query: 10 NPYNTDEFLTRFLYARKMNVDKSFDLLCNY 39
           P   D FL RFL ARK +V+K+ ++L  Y
Sbjct: 19 PPRLDDAFLLRFLRARKFDVEKAKEMLEKY 48

Length = 48

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 45.1 bits (107), Expect = 4e-06
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 16/138 (11%)

Query: 70  GVLSNRDRKGRRILVFFANNWDHTRYT-LEIIYKSLILTLDNLLLDTQNQMNGLIFIVDW 128
           G L  RD++GR +L+  A N D ++    E + + L+ TL+ LL +   Q+ G + I+D 
Sbjct: 11  GYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDL 70

Query: 129 GNLTLRQTSNNINSFKQVRTMLE------VQ----VNISNFSSFIKSGFSSFIKSGISSF 178
             L+L     + +  K++  +L+      ++    +N   F   +      F+       
Sbjct: 71  KGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSEKTRKK 130

Query: 179 IKSGISSFIKSDLSSFMK 196
           I      F+ SD    +K
Sbjct: 131 IV-----FLGSDKEELLK 143

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score = 44.9 bits (107), Expect = 5e-06
 Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 3/87 (3%)

Query: 67  GLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDN-LLLDTQNQMNGLIFI 125
           G  G L  RD++GR +L       D  + +LE + + L+L L+  LLL  + Q+ G+  I
Sbjct: 1   GGKGYLHGRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVI 60

Query: 126 VDWGNLTLRQTSNNINSFKQVRTMLEV 152
           +D   L+L            ++ +L++
Sbjct: 61  IDMKGLSLSNMDK--WPISFLKKILKI 85

Length = 152

>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 10 NPYNTDEFLTRFLYARKMNVDKSFDLLCNY 39
               D FL RFL ARK +V+K+  +L   
Sbjct: 19 KDKLDDAFLLRFLRARKFDVEKAIKMLKKT 48

This all-alpha domain is found to the N-terminus of pfam00650. Length = 48

>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional

 Score = 38.6 bits (89), Expect = 0.003
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 173 SGISSFIKSGISSFIKSDLSSFMKSGFSSFIKSGFSSRIKSGFSSRIKSGFSSCIKSSLS 232
           SG+ S I   I S  +  +   ++SG    ++ G    ++SG    ++ G    I+    
Sbjct: 566 SGVRSGIHCSIQSSARGGVHDSVRSGVHDSVRGGVHDSMRSGVHDSLRGGVHDSIRGGAH 625

Query: 233 FCIKSGIPSFIKSGS 247
             ++SG    ++  S
Sbjct: 626 DGVRSGAHDGVRKSS 640

Length = 1021

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	262
KOG1470|consensus	324		99.98
KOG1471|consensus	317		99.94
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.78
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.69
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.62
PF03765	55	CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr	98.57
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	97.41

>KOG1470|consensus

Probab=99.98  E-value=1.3e-31  Score=247.14  Aligned_cols=164  Identities=20%  Similarity=0.297  Sum_probs=147.7

Q ss_pred             CCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCccccccCCCChHHHHHHHHcCCCeeccccCCCCCEEEEEeccccCC
Q psy2694          13 NTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANNWDH   92 (262)
Q Consensus        13 ~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~GrpViI~r~g~~dp   92 (262)
                      .+|.+++||||||||||++|.+||.+++.||+.+..  ... ....++...+++|.++.+ |+|++||||+|+++..+.+
T Consensus        47 ~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~--~~~-~~~~Ev~~e~~tGK~yi~-G~D~~gRPVl~~~~~~~~q  122 (324)
T KOG1470|consen   47 CSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGP--EEV-IEADEVAAELETGKAYIL-GHDKDGRPVLYLRPRPHRQ  122 (324)
T ss_pred             CcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCC--ccc-cCHHHHHHHhhcCcEEEe-cccCCCCeEEEEecCCCCC
Confidence            579999999999999999999999999999999853  111 222458889999999877 6999999999999999889


Q ss_pred             CCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHHHHhhcCCcccc-cccccchhh
Q psy2694          93 TRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSF-IKSGFSSFI  171 (262)
Q Consensus        93 ~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ilQd~YPeR~~-~~~~~~~~~  171 (262)
                      +.-+..+..|++++++|.++.....+++++++++|++|||++   ++  +...+|.+++++|+|||||++ .+.++.|||
T Consensus       123 n~~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~s---N~--d~~~~k~~~~~lq~hYPErLg~a~l~~~P~i  197 (324)
T KOG1470|consen  123 NTKTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSMS---NP--DIKFLKELLHILQDHYPERLGKALLVNAPWI  197 (324)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCccc---CC--CcHHHHHHHHHHHHhChHHhhhhhhcCChHH
Confidence            999999999999999999988766667999999999999995   78  999999999999999999999 788888999


Q ss_pred             hhhhhhhHHHHHHH
Q psy2694         172 KSGISSFIKSGISS  185 (262)
Q Consensus       172 ~~~~~~~~~~~~~~  185 (262)
                      |.++|++||+||.-
T Consensus       198 F~~~wkiikpflDp  211 (324)
T KOG1470|consen  198 FQPFWKIIKPFLDP  211 (324)
T ss_pred             HHHHHHHhhhccCh
Confidence            99999999999843

>KOG1471|consensus

Probab=99.94  E-value=3.2e-26  Score=210.91  Aligned_cols=183  Identities=20%  Similarity=0.285  Sum_probs=146.6

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHC--ccccccCCCChHHHHHHHHcCCCeeccccCCCC
Q psy2694           2 SKRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH--AEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKG   79 (262)
Q Consensus         2 ~k~PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~--peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~G   79 (262)
                      .++||+.. ...||.+|+||||||+||+|+|++++.+++.||.++  ++++.+.+..+ ++.   + .+...+++.|++|
T Consensus        33 ~~~~~l~~-~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~~-~~~---~-~~~~~~~~~~~~g  106 (317)
T KOG1471|consen   33 LQKPHLPN-KYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEEDD-ELL---K-YYPQGLHGVDKEG  106 (317)
T ss_pred             hhccCCCC-CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccch-hhh---h-hccccccccCCCC
Confidence            57899942 368999999999999999999999999998888886  56666533322 222   1 2344567888899


Q ss_pred             CEEEEEeccccCCCCC------------CHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHH
Q psy2694          80 RRILVFFANNWDHTRY------------TLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVR  147 (262)
Q Consensus        80 rpViI~r~g~~dp~~~------------s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lK  147 (262)
                      +||++-+.|..++...            ...++.+...+.+|....+.+.+++|++.|+|++|++++|+++.  .+..++
T Consensus       107 ~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~--~~~~~~  184 (317)
T KOG1471|consen  107 RPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKP--APTLLK  184 (317)
T ss_pred             CEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHH--HHHHHH
Confidence            9999888888776532            45556666667777766666778999999999999999999999  999999


Q ss_pred             HHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhHH
Q psy2694         148 TMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDLS  192 (262)
Q Consensus       148 k~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (262)
                      +++.++|++||+++. +...|.|+++..+|+++|++++.=.++++.
T Consensus       185 ~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~  230 (317)
T KOG1471|consen  185 KILKILQDNYPERLKRIHIINAPTIFSALWKVVKPFLDEKTRKKIH  230 (317)
T ss_pred             HHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhccCCHHHHhhhe
Confidence            999999999999987 999999999999999988876644444443

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.78  E-value=1.3e-19  Score=149.30  Aligned_cols=123  Identities=15%  Similarity=0.221  Sum_probs=98.0

Q ss_pred             cCCCeeccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhc-cCC-CCcCcEEEEEeCCCCCcccccCCcCCH
Q psy2694          66 DGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLL-DTQ-NQMNGLIFIVDWGNLTLRQTSNNINSF  143 (262)
Q Consensus        66 ~g~~~~Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~-e~~-~qi~GivvIiDl~G~Slshl~~l~~~~  143 (262)
                      .+...+++|+|++||||++.+++++|+++++.++++|+.++++|.+++ .++ .+++|+++|+|++|++++|+.+.  ++
T Consensus         5 ~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~--~~   82 (159)
T PF00650_consen    5 KSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWW--PI   82 (159)
T ss_dssp             TTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCH--HH
T ss_pred             CCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccc--hh
Confidence            455678889999999999999999999999999999999999999885 333 67899999999999999888777  68


Q ss_pred             HHHHHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhh
Q psy2694         144 KQVRTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSD  190 (262)
Q Consensus       144 ~~lKk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (262)
                      +.+|.+++++|++||+|.. +...+.|++++.+|++++++++.=++++
T Consensus        83 ~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~l~~~~~~k  130 (159)
T PF00650_consen   83 SFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPFLSPKTREK  130 (159)
T ss_dssp             HHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGGS-HHHHCT
T ss_pred             hhhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhhcCHhhhee
Confidence            9999999999999999988 9999999999999999998776555444

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>smart00516 SEC14 Domain in homologues of a S

Probab=99.69  E-value=1.4e-16  Score=131.03  Aligned_cols=107  Identities=20%  Similarity=0.294  Sum_probs=97.5

Q ss_pred             ccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhcc--CCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHH
Q psy2694          74 NRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLD--TQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLE  151 (262)
Q Consensus        74 g~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e--~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~  151 (262)
                      |+|++||||+++++++++++..+.+++++++++++|.++.+  +..+++|+++|+|++|++++|   +  +++.+|++++
T Consensus        14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~--~~~~lk~~~~   88 (158)
T smart00516       14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSN---P--DLSVLRKILK   88 (158)
T ss_pred             CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCccc---c--cHHHHHHHHH
Confidence            79999999999999999999999999999999999999876  677899999999999999975   6  8999999999


Q ss_pred             HHhhcCCcccc-cccccchhhhhhhhhhHHHHHHH
Q psy2694         152 VQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISS  185 (262)
Q Consensus       152 ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~  185 (262)
                      .+|++||+|.. +..-+.|+++..+|++++++++.
T Consensus        89 ~~~~~yp~~l~~i~ivn~p~~~~~~~~~~~~~l~~  123 (158)
T smart00516       89 ILQDHYPERLGKVLIINPPWFFRVLWKIIKPFLDE  123 (158)
T ss_pred             HHHHHhHHHhCeEEEECCCHHHHHHHHHHHhhcCh
Confidence            99999999977 88888899999988887766544

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.62  E-value=2e-15  Score=121.97  Aligned_cols=115  Identities=22%  Similarity=0.305  Sum_probs=99.0

Q ss_pred             CCeeccccCCCCCEEEEEeccccCCCC-CCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHH
Q psy2694          68 LPGVLSNRDRKGRRILVFFANNWDHTR-YTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQV  146 (262)
Q Consensus        68 ~~~~Lpg~Dk~GrpViI~r~g~~dp~~-~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~l  146 (262)
                      .+.+..++|++||||++.++++.++.. .+.++++++.++.+|.++.++..+.+|+++|+|++|++++++. .  +++.+
T Consensus         9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~~~~~-~--~~~~~   85 (157)
T cd00170           9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSLSHLL-P--DPSLL   85 (157)
T ss_pred             cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCChhccc-h--hHHHH
Confidence            445566689999999999999655544 4558999999999999998877777899999999999999887 6  88999


Q ss_pred             HHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHH
Q psy2694         147 RTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISS  185 (262)
Q Consensus       147 Kk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~  185 (262)
                      |++++.+|++||+++. +..-+.|+++..+|++++++++.
T Consensus        86 k~~~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~l~~  125 (157)
T cd00170          86 KKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPFLSE  125 (157)
T ss_pred             HHHHHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHhcCH
Confidence            9999999999999977 88888899999999998775543

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=98.57  E-value=7.3e-08  Score=67.32  Aligned_cols=29  Identities=45%  Similarity=0.713  Sum_probs=25.0

Q ss_pred             CCCCHHHHHHHHhhcCCCHHHHHHHHHHH
Q psy2694          11 PYNTDEFLTRFLYARKMNVDKSFDLLCNY   39 (262)
Q Consensus        11 ~~~DD~~LLRFLRArKfdvekAkk~L~~y   39 (262)
                      ...+|.+|+||||||+|||++|.+||.+|
T Consensus        27 ~~~~d~~llRFLRARkf~v~~A~~mL~~t   55 (55)
T PF03765_consen   27 EDHDDNFLLRFLRARKFDVEKAFKMLKKT   55 (55)
T ss_dssp             SS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence            34799999999999999999999999886

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=97.41  E-value=0.00017  Score=59.20  Aligned_cols=82  Identities=17%  Similarity=0.214  Sum_probs=51.8

Q ss_pred             eccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHH
Q psy2694          71 VLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTML  150 (262)
Q Consensus        71 ~Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l  150 (262)
                      .-.|+|++||||+++...+. ++..   +..+++.+++..+..+  ....++++|+|+++.+..  ...  +...++++.
T Consensus         5 ~~gG~d~~g~pV~~~~~~~~-~~~~---~~~~ll~yl~~~l~~~--~~~~~f~vVid~~~~~~~--~~~--~~~~l~~~~   74 (149)
T PF13716_consen    5 YPGGRDREGRPVVVFIASRL-PSSD---DLERLLLYLLSTLSEE--VVDKPFSVVIDHTGFSRS--SEP--SLSWLKQLY   74 (149)
T ss_dssp             EEEEEBTTS-EEEEEEGGG--C-TT---HHHHHHHHHHHHH-TT--TTTS-EEEEEE-TT--GG--G-----HHHHHHTT
T ss_pred             EecccCCCcCEEEEEECCcC-cchh---hHHHHHHHHHHhhhHH--hcCCCEEEEEEcCCCccc--cCC--chHHHHHHH
Confidence            34579999999999998877 4333   5556666666655333  224679999999999884  344  678899998


Q ss_pred             HHHhhcCCcccc
Q psy2694         151 EVQVNISNFSSF  162 (262)
Q Consensus       151 ~ilQd~YPeR~~  162 (262)
                      +.++..|+.+.-
T Consensus        75 ~~l~~~~~~nl~   86 (149)
T PF13716_consen   75 KLLPRKYKKNLK   86 (149)
T ss_dssp             TSS-HHHHHTEE
T ss_pred             HHHHHHHhhceE
Confidence            888888888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	262
3hy5_A	316	Crystal Structure Of Cralbp Length = 316		9e-16
3hx3_A	316	Crystal Structure Of Cralbp Mutant R234w Length = 3		6e-15
1oip_A	278	The Molecular Basis Of Vitamin E Retention: Structu		1e-08
1r5l_A	262	Crystal Structure Of Human Alpha-tocopherol Transfe		1e-08

>pdb|3HY5|A Chain A, Crystal Structure Of Cralbp Length = 316

Iteration: 1
 Score = 80.5 bits (197), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 17  FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRD 76
           F  RF+ ARK NV ++++LL  Y+ +R  + E FD+L  S   ++C I+ G PGVLS+RD
Sbjct: 94  FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSL--SPEAVRCTIEAGYPGVLSSRD 151
Query: 77  RKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGLIFIVDWGNLTLRQT 136
           + GR +++F   NW     T + I ++               +NG   I ++   T++Q 
Sbjct: 152 KYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQA 211
Query: 137 SN 138
           ++
Sbjct: 212 AS 213

>pdb|3HX3|A Chain A, Crystal Structure Of Cralbp Mutant R234w Length = 316

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 64/122 (52%), Gaps = 2/122 (1%)
Query: 17  FLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRD 76
           F  RF+ ARK NV ++++LL  Y+ +R  + E FD+L  S   ++C I+ G PGVLS+RD
Sbjct: 94  FFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSL--SPEAVRCTIEAGYPGVLSSRD 151
Query: 77  RKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGLIFIVDWGNLTLRQT 136
           + GR + +F   NW     T + I ++               +NG   I ++   T +Q 
Sbjct: 152 KYGRVVXLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTXQQA 211
Query: 137 SN 138
           ++
Sbjct: 212 AS 213

>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 14  TDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLS 73
           TD FL RFL AR  ++D ++ LL NY  +R    E   +L    R I   +K G  GVL 
Sbjct: 48  TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADL--HPRSIIGLLKAGYHGVLR 105
Query: 74  NRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGLIFIVD 127
           +RD  G ++L++   +WD   +T   +++  +              NG+  I D
Sbjct: 106 SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFD 159

>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)
Query: 14  TDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLS 73
           TD FL RFL AR  ++D ++ LL NY  +R    E   +L    R I   +K G  GVL 
Sbjct: 32  TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADL--HPRSIIGLLKAGYHGVLR 89
Query: 74  NRDRKGRRILVFFANNWDHTRYTLEIIYKSLIXXXXXXXXXXXXXMNGLIFIVD 127
           +RD  G ++L++   +WD   +T   +++  +              NG+  I D
Sbjct: 90  SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFD 143
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	262
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	5e-36
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	1e-35
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	3e-15
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	2e-12
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	2e-11

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score =  129 bits (326), Expect = 5e-36
 Identities = 50/197 (25%), Positives = 99/197 (50%), Gaps = 12/197 (6%)

Query: 8   DFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDG 67
           +        F  RF+ ARK NV ++++LL  Y+ +R  + E FD+L+     ++C I+ G
Sbjct: 85  ERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSPE--AVRCTIEAG 142

Query: 68  LPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVD 127
            PGVLS+RD+ GR +++F   NW     T + I ++    L+ LL + + Q+NG   I +
Sbjct: 143 YPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIEN 202

Query: 128 WGNLTLRQTSN-NINSFKQVRTMLE-------VQVNISNFSSFIKSGFSSFIKSGISSFI 179
           +   T++Q ++   +  +++  ML+         ++  +   +  + + + +K  + S +
Sbjct: 203 FKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTY-NVVKPFLKSKL 261

Query: 180 KSGISSFIKSDLSSFMK 196
              +      DLS F +
Sbjct: 262 LERV-FVHGDDLSGFYQ 277

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score =  127 bits (320), Expect = 1e-35
 Identities = 47/191 (24%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 14  TDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLS 73
           TD FL RFL AR  ++D ++ LL NY  +R    E   +L      I   +K G  GVL 
Sbjct: 32  TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPR--SIIGLLKAGYHGVLR 89

Query: 74  NRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTL 133
           +RD  G ++L++   +WD   +T   +++  ++T + ++ + + Q NG+  I D      
Sbjct: 90  SRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF 149

Query: 134 RQ-TSNNINSFKQVRTMLE-------VQVNISNFSSFIKSGFSSFIKSGISSFIKSGISS 185
                   +  K++  +L          +++ N      + F S IK  ++  IK  I  
Sbjct: 150 SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVF-SMIKPFLTEKIKERIHM 208

Query: 186 FIKSDLSSFMK 196
              +   S ++
Sbjct: 209 HGNNYKQSLLQ 219

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score = 73.5 bits (180), Expect = 3e-15
 Identities = 30/156 (19%), Positives = 59/156 (37%), Gaps = 16/156 (10%)

Query: 8   DFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDG 67
              P   D FL R+L AR  ++ KS  +L  ++ +R       DN+ +S +  +  I+  
Sbjct: 28  PALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD--IDNI-ISWQPPE-VIQQY 83

Query: 68  LPGVLSNRDRKGRRILVFFANNWD----HTRYTLEIIYKSLILTLDNLLLDTQNQM---- 119
           L G +   D  G  +        D        + + + ++ +   + LL +  +Q     
Sbjct: 84  LSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLG 143

Query: 120 ---NGLIFIVDWGNLTLRQTSNN-INSFKQVRTMLE 151
                +  I D   L L+      + ++ +   M E
Sbjct: 144 RKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFE 179

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score = 64.9 bits (158), Expect = 2e-12
 Identities = 23/163 (14%), Positives = 62/163 (38%), Gaps = 17/163 (10%)

Query: 6   DIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH-----AEFFDNLTVSNRQI 60
           + ++     D  L RFL ARK +++ S ++      +R  +      E ++N   +  + 
Sbjct: 52  EKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKE 111

Query: 61  QCAIKDGLPGVLSNRDRKGRRILVFFANNWD----HTRYTLEIIYKSLILTLDNLL---L 113
           +  +    P    + D+ GR +        +    +   T + + ++L+   +      +
Sbjct: 112 RIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRV 171

Query: 114 DTQNQMNG-----LIFIVDWGNLTLRQTSNNINSFKQVRTMLE 151
              ++  G        ++D   ++L    + ++  K V  + +
Sbjct: 172 PACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADISQ 214

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 22/161 (13%), Positives = 54/161 (33%), Gaps = 17/161 (10%)

Query: 5   SDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITY-RTNHA-EFFDNLTVSNRQIQC 62
            D  F     D  L RFL ARK +V  + ++  N   + +         +     +    
Sbjct: 42  EDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKP--- 98

Query: 63  AIKDGLPGVLSNRDRKGRRILVFFANNWDHTRY----TLEIIYKSLILTLDNLLL----- 113
            I    P      D+ GR +        +        + E + K+L+   ++++      
Sbjct: 99  LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPA 158

Query: 114 ---DTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLE 151
                 + +     I+D   +++    + ++  ++   + +
Sbjct: 159 CSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQ 199

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	262
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	100.0
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	100.0
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	99.97
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	99.97
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	99.97
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	97.02
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	97.0

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=100.00  E-value=4.9e-39  Score=296.18  Aligned_cols=186  Identities=25%  Similarity=0.470  Sum_probs=168.3

Q ss_pred             CCCCCCCC--C-------CCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCccccccCCCChHHHHHHHHcCCCee
Q psy2694           1 MSKRSDID--F-------NPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGV   71 (262)
Q Consensus         1 l~k~PhL~--~-------p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~peif~~~dp~~~~l~~~l~~g~~~~   71 (262)
                      |++|||+.  +       +++.||.+|+|||||||||+++|+++|++|++||+++|++|++.++  +++++.++.|++++
T Consensus        69 i~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~~~~~~~~~--~~i~~~l~~g~~~~  146 (316)
T 3hx3_A           69 VQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYPELFDSLSP--EAVRCTIEAGYPGV  146 (316)
T ss_dssp             HHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCGGGTTTCCH--HHHHHHHHTTSSEE
T ss_pred             HHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCchhhcCCCH--HHHHHHHHcCCccc
Confidence            35788872  1       1458999999999999999999999999999999999998887765  56888899999999


Q ss_pred             ccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHH
Q psy2694          72 LSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLE  151 (262)
Q Consensus        72 Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~  151 (262)
                      ++|+|++||||++++++++|+++++.++++|+.++++|.++.+++.|++|+++|+|++|+|++|++++  +++.+|+++.
T Consensus       147 l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl~~~~~~--~~~~~k~~~~  224 (316)
T 3hx3_A          147 LSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTMQQAASL--RTSDLRKMVD  224 (316)
T ss_dssp             CSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC--CHHHHHHHHH
T ss_pred             cCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCHHHhccC--ChHHHHHHHH
Confidence            99999999999999999999999999999999999999999887788999999999999999999999  9999999999


Q ss_pred             HHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhh
Q psy2694         152 VQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSD  190 (262)
Q Consensus       152 ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (262)
                      ++|++||+|+. +...+.||+|.++|+++|++++.=++++
T Consensus       225 ~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpfl~~kt~~K  264 (316)
T 3hx3_A          225 MLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPFLKSKLLER  264 (316)
T ss_dssp             HHHTTSTTTEEEEEEESCCTTHHHHHHHHGGGCCHHHHTT
T ss_pred             HHHHhhhhhhceEEEEeCCHHHHHHHHHHHHhCCHHhhhh
Confidence            99999999987 8899999999999999988765444433

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=100.00  E-value=2.5e-37  Score=274.49  Aligned_cols=177  Identities=25%  Similarity=0.357  Sum_probs=162.3

Q ss_pred             CCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCccccccCCCChHHHHHHHHcCCCeeccccCCCCCEEEEEeccc
Q psy2694          10 NPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRILVFFANN   89 (262)
Q Consensus        10 p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~GrpViI~r~g~   89 (262)
                      |...||.+|+||||||+||+++|.++|++|++||+++|+++.++++.  ++.+.++.|++.+++|+|++||||+++++++
T Consensus        28 ~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~~~--~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~  105 (262)
T 1r5l_A           28 PLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHPR--SIIGLLKAGYHGVLRSRDPTGSKVLIYRIAH  105 (262)
T ss_dssp             SSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCGG--GTHHHHHTTCEEECSSCCTTCCEEEEEEGGG
T ss_pred             CCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCChH--HHHHHHHcCCccCCCCcCCCCCEEEEEeccc
Confidence            55689999999999999999999999999999999999888877763  4677889999889999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHHHHhhcCCcccc-cccccc
Q psy2694          90 WDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQVNISNFSSF-IKSGFS  168 (262)
Q Consensus        90 ~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~ilQd~YPeR~~-~~~~~~  168 (262)
                      +|++.++.++++|+.++++|.++.+++.|++|+++|+|++|+|++|+.++  +++.+|++++++|++||+|+. +...+.
T Consensus       106 ~d~~~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~--~~~~~k~~~~~~q~~yPerl~~i~ivN~  183 (262)
T 1r5l_A          106 WDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQI--TPSVAKKIAAVLTDSFPLKVRGIHLINE  183 (262)
T ss_dssp             CCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC--CHHHHHHHHHHHHTSSSSCEEEEEEESC
T ss_pred             cCcccCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCHHHHhcc--CHHHHHHHHHHHHhhCChhhceEEEEeC
Confidence            99999999999999999999998887778899999999999999999999  999999999999999999988 899999


Q ss_pred             hhhhhhhhhhHHHHHHHHHHhh
Q psy2694         169 SFIKSGISSFIKSGISSFIKSD  190 (262)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~  190 (262)
                      ||++.++|+++|++++.=.+++
T Consensus       184 P~~f~~~~~~vkpfl~~~t~~K  205 (262)
T 1r5l_A          184 PVIFHAVFSMIKPFLTEKIKER  205 (262)
T ss_dssp             CGGGHHHHHHHGGGSCHHHHTT
T ss_pred             CHHHHHHHHHHHHhcCHHHHhh
Confidence            9999999999998765544444

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=99.97  E-value=2.2e-32  Score=248.03  Aligned_cols=180  Identities=16%  Similarity=0.129  Sum_probs=150.1

Q ss_pred             CCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHC--ccccccCCCChHHHHHHHHcCCCeeccccCCCCC
Q psy2694           3 KRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH--AEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGR   80 (262)
Q Consensus         3 k~PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~--peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~Gr   80 (262)
                      ++|+   +...||.+|+|||||||||+++|+++|++|++||+++  ++++.+.++...   +.++..+..+++|+|++||
T Consensus        43 ~~~~---~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~---~~~~~~~~~~~~g~Dk~Gr  116 (296)
T 1aua_A           43 DAGF---IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEK---PLIAKFYPQYYHKTDKDGR  116 (296)
T ss_dssp             HTTC---CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTH---HHHGGGSCCEEEEECTTSC
T ss_pred             hcCC---CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcH---HHHHHhCCceecccCCCCC
Confidence            4553   3458999999999999999999999999999999998  778877765332   2334445556789999999


Q ss_pred             EEEEEeccccCCCC----CCHHHHHHHHHHHHHHHhcc--------CCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHH
Q psy2694          81 RILVFFANNWDHTR----YTLEIIYKSLILTLDNLLLD--------TQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRT  148 (262)
Q Consensus        81 pViI~r~g~~dp~~----~s~~~~iR~~~~~lE~~l~e--------~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk  148 (262)
                      ||++.+++++|+++    .+.++++|+.++.+|.+++.        .+.+++|+++|+|++|++++|+.++   +..+|+
T Consensus       117 pV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~~~~~~~---~~~~k~  193 (296)
T 1aua_A          117 PVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSV---MSYVRE  193 (296)
T ss_dssp             EEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHH---HHHHHH
T ss_pred             EEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCHHHHHHH---HHHHHH
Confidence            99999999998764    58999999999999987653        2345899999999999999987654   788999


Q ss_pred             HHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhH
Q psy2694         149 MLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDL  191 (262)
Q Consensus       149 ~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (262)
                      +++++|++||+|+. +...+.||+|.++|+++|++++.=+++++
T Consensus       194 ~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI  237 (296)
T 1aua_A          194 ASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKI  237 (296)
T ss_dssp             HHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTE
T ss_pred             HHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceE
Confidence            99999999999988 99999999999999999987665544443

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=99.97  E-value=6.9e-32  Score=254.89  Aligned_cols=176  Identities=15%  Similarity=0.143  Sum_probs=149.1

Q ss_pred             CCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHC--ccccccCCCChHHHHHHHHcCCCeeccccCCCCCEE
Q psy2694           5 SDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH--AEFFDNLTVSNRQIQCAIKDGLPGVLSNRDRKGRRI   82 (262)
Q Consensus         5 PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~--peif~~~dp~~~~l~~~l~~g~~~~Lpg~Dk~GrpV   82 (262)
                      ||+  | ..||.+|+||||||+||+++|+++|++|++||+++  ++++....+  +.+++.+.    ..++|+|++||||
T Consensus        28 ~~l--~-~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~--~~~~~~~~----~~~~g~Dk~GrpV   98 (403)
T 1olm_A           28 PAL--P-NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPP--EVIQQYLS----GGMCGYDLDGCPV   98 (403)
T ss_dssp             GGS--S-CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCC--HHHHHHCC----BEEEEECTTSCEE
T ss_pred             cCC--C-CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCH--HHHHHhCC----ceeeccCCCcCEE
Confidence            566  3 58999999999999999999999999999999998  456552222  34444433    2357999999999


Q ss_pred             EEEeccccCCC----CCCHHHHHHHHHHHHHHHhccCCC-------CcCcEEEEEeCCCCCcccccCCcCCHHHHHHHHH
Q psy2694          83 LVFFANNWDHT----RYTLEIIYKSLILTLDNLLLDTQN-------QMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLE  151 (262)
Q Consensus        83 iI~r~g~~dp~----~~s~~~~iR~~~~~lE~~l~e~~~-------qi~GivvIiDl~G~Slshl~~l~~~~~~lKk~l~  151 (262)
                      ++++++++|++    ..+.++++|+.++++|.++.+...       +++|+++|+|++|++++|+++.  .+..+|++++
T Consensus        99 ~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl~~~~~~--~~~~~k~~~~  176 (403)
T 1olm_A           99 WYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKP--AVEAYGEFLC  176 (403)
T ss_dssp             EEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGGGCHH--HHHHHHHHHH
T ss_pred             EEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCHHHHhhH--HHHHHHHHHH
Confidence            99999999987    579999999999999998775432       4799999999999999998877  7889999999


Q ss_pred             HHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhH
Q psy2694         152 VQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDL  191 (262)
Q Consensus       152 ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (262)
                      ++|++||+|+. +...+.||+|.++|+++|++++.=.++++
T Consensus       177 ~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpfl~~~t~~KI  217 (403)
T 1olm_A          177 MFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI  217 (403)
T ss_dssp             HHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTE
T ss_pred             HHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhhcCHhhhceE
Confidence            99999999988 99999999999999999997766555554

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=99.97  E-value=1.2e-31  Score=247.73  Aligned_cols=183  Identities=13%  Similarity=0.173  Sum_probs=149.8

Q ss_pred             CCCCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCc--cccccCCCCh----HHHHHHHHcCCCeecccc
Q psy2694           2 SKRSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHA--EFFDNLTVSN----RQIQCAIKDGLPGVLSNR   75 (262)
Q Consensus         2 ~k~PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~p--eif~~~dp~~----~~l~~~l~~g~~~~Lpg~   75 (262)
                      +++|+.   ...||.+|+|||||||||+++|.++|++|++||++++  +++.+.++..    ++ .+.+...+..+++|+
T Consensus        51 ~~~~~~---~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~~~~~e-~~~~~~~~~~~~~g~  126 (320)
T 3q8g_A           51 LEKNYK---ERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKEAEDKE-RIKLAKMYPQYYHHV  126 (320)
T ss_dssp             HHTTCC---SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHHHHHHH-HHHHHTTSCEEEEEE
T ss_pred             HhcCCC---CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccccchhH-HHHHHHhCCceecCC
Confidence            356643   4589999999999999999999999999999999997  5665544431    12 223444556678899


Q ss_pred             CCCCCEEEEEeccccCCCC----CCHHHHHHHHHHHHHHHhcc--------CCCCcCcEEEEEeCCCCCcccccCCcCCH
Q psy2694          76 DRKGRRILVFFANNWDHTR----YTLEIIYKSLILTLDNLLLD--------TQNQMNGLIFIVDWGNLTLRQTSNNINSF  143 (262)
Q Consensus        76 Dk~GrpViI~r~g~~dp~~----~s~~~~iR~~~~~lE~~l~e--------~~~qi~GivvIiDl~G~Slshl~~l~~~~  143 (262)
                      |++||||+++++|++|+++    .+.++++|+.++.+|.+++.        .+..++++++|+|++|++++|+.++   +
T Consensus       127 Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl~~~~~~---~  203 (320)
T 3q8g_A          127 DKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHV---L  203 (320)
T ss_dssp             CTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCHHHHHHT---H
T ss_pred             CCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCHHHHHHH---H
Confidence            9999999999999999875    37889999999999987642        1234678999999999999988755   7


Q ss_pred             HHHHHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhH
Q psy2694         144 KQVRTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDL  191 (262)
Q Consensus       144 ~~lKk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (262)
                      ..+|+++.++|++||+|+. +...+.||++..+|+++|++++.=+++++
T Consensus       204 ~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpfl~~~t~~KI  252 (320)
T 3q8g_A          204 SYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKI  252 (320)
T ss_dssp             HHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGGSCHHHHHTE
T ss_pred             HHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHhCCHHHhhhE
Confidence            8899999999999999988 99999999999999999987766555554

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=97.02  E-value=0.00079  Score=59.91  Aligned_cols=96  Identities=10%  Similarity=0.104  Sum_probs=66.6

Q ss_pred             CeeccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCCcCCHHHHHH
Q psy2694          69 PGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRT  148 (262)
Q Consensus        69 ~~~Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l~~~~~~lKk  148 (262)
                      +++-.|.|++||||+++.+.+.+++..+.+.++.+++.++|...      .....+|+|+++++..+  ..  ..+.+++
T Consensus        12 ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~------~~~y~lV~d~T~~~~~n--~p--~~~wl~~   81 (256)
T 3pg7_A           12 IFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY------AKPYEIVVDLTHTGPSN--RF--KTDFLSK   81 (256)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT------TSCEEEEEECTTCCGGG--CC--CHHHHHH
T ss_pred             CEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCCCCccc--CC--cHHHHHH
Confidence            34555899999999999999999888887777766666665433      25789999999999853  34  5666776


Q ss_pred             HHHHHhhcCCcccc-cc-cccchhhhhh
Q psy2694         149 MLEVQVNISNFSSF-IK-SGFSSFIKSG  174 (262)
Q Consensus       149 ~l~ilQd~YPeR~~-~~-~~~~~~~~~~  174 (262)
                      +.+++..-|....- +- .|-..|++..
T Consensus        82 ~~~llp~~~~kNlk~~Yivnpt~~~k~~  109 (256)
T 3pg7_A           82 WFVVFPGFAYDNVSAVYIYNCNSWVREY  109 (256)
T ss_dssp             TTTSSCHHHHHTEEEEEEESCCHHHHHH
T ss_pred             HHHHcCHHHHhcccEEEEECCCHHHHHH
Confidence            66555555555543 32 3333566644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	262
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	2e-15
d1r5la1	66	a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei	3e-12
d1auaa1	93	a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl	9e-09
d1olma1	75	a.5.3.1 (A:1-75) Supernatant protein factor (SPF),	1e-08
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	3e-05
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	6e-05

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.4 bits (172), Expect = 2e-15
 Identities = 20/89 (22%), Positives = 43/89 (48%), Gaps = 1/89 (1%)

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLI 123
           +K G  GVL +RD  G ++L++   +WD   +T   +++  ++T + ++ + + Q NG+ 
Sbjct: 6   LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIK 65

Query: 124 FIVDWGNLTLRQ-TSNNINSFKQVRTMLE 151
            I D              +  K++  +L 
Sbjct: 66  AIFDLEGWQFSHAFQITPSVAKKIAAVLT 94

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 17/40 (42%), Positives = 23/40 (57%)

Query: 14 TDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNL 53
          TD FL RFL AR  ++D ++ LL NY  +R    E   +L
Sbjct: 24 TDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADL 63

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.4 bits (118), Expect = 9e-09
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 5  SDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH 46
           D  F     D  L RFL ARK +V  + ++  N   +R ++
Sbjct: 42 EDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDY 83

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 8  DFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNH 46
             P   D FL R+L AR  ++ KS  +L  ++ +R   
Sbjct: 28 PALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQK 66

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (97), Expect = 3e-05
 Identities = 15/136 (11%), Positives = 42/136 (30%), Gaps = 22/136 (16%)

Query: 64  IKDGLPGVLSNRDRKGRRILVFFANNWD----HTRYTLEIIYKSLILTLDNLL------- 112
           I    P      D+ GR +        +    +   + E + K+L+   ++++       
Sbjct: 7   IAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPAC 66

Query: 113 -LDTQNQMNGLIFIVDWGNLTLRQTSNNINSFKQVRTMLEVQ----------VNISNFSS 161
                + +     I+D   +++    + ++  ++   + +            +N     S
Sbjct: 67  SRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFS 126

Query: 162 FIKSGFSSFIKSGISS 177
                F  F+     S
Sbjct: 127 TAFRLFKPFLDPVTVS 142

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 6e-05
 Identities = 16/155 (10%), Positives = 35/155 (22%), Gaps = 23/155 (14%)

Query: 63  AIKDGLPGVLSNRDRKGRRILVFFANNWD----HTRYTLEIIYKSLILTLDNLL------ 112
            I+  L G +   D  G  +        D        + + + ++ +   + LL      
Sbjct: 4   VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQ 63

Query: 113 -LDTQNQMNGLIFIVDWGNLT-----------LRQTSNNINSFKQVRTMLEVQVNISNFS 160
                 ++  +  I D   L              +                  V      
Sbjct: 64  TTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLF 123

Query: 161 SFIKSGFSSFIKSGISSFIKSGISSFIKSDLSSFM 195
               +    F+       I   + +  K  L   +
Sbjct: 124 PVAYNLIKPFLSEDTRKKIMV-LGANWKEVLLKHI 157

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	262
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	99.9
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.78
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.7
d1r5la1	66	Alpha-tocopherol transfer protein {Human (Homo sap	99.56
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	99.06
d1auaa1	93	N-terminal domain of phosphatidylinositol transfer	98.91

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-24  Score=181.26  Aligned_cols=130  Identities=19%  Similarity=0.292  Sum_probs=119.9

Q ss_pred             HHHHHHcCCCeeccccCCCCCEEEEEeccccCCCCCCHHHHHHHHHHHHHHHhccCCCCcCcEEEEEeCCCCCcccccCC
Q psy2694          60 IQCAIKDGLPGVLSNRDRKGRRILVFFANNWDHTRYTLEIIYKSLILTLDNLLLDTQNQMNGLIFIVDWGNLTLRQTSNN  139 (262)
Q Consensus        60 l~~~l~~g~~~~Lpg~Dk~GrpViI~r~g~~dp~~~s~~~~iR~~~~~lE~~l~e~~~qi~GivvIiDl~G~Slshl~~l  139 (262)
                      +.++++.|++.+||++|++||||++++++++||++++..+++|+.++++|.++.+++.|++|+++|+|++|+|++|+++.
T Consensus         2 i~~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~~~~~~~   81 (185)
T d1r5la2           2 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQFSHAFQI   81 (185)
T ss_dssp             THHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCHHHHHHC
T ss_pred             hHHHHHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCHHHhhhc
Confidence            35688999999999999999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             cCCHHHHHHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhHHHHH
Q psy2694         140 INSFKQVRTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDLSSFM  195 (262)
Q Consensus       140 ~~~~~~lKk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (262)
                        +++.++++++++|++||+|.. +..-+.|++++.+|+++|++    |++++++++
T Consensus        82 --~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~f----l~~k~~~Ki  132 (185)
T d1r5la2          82 --TPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPF----LTEKIKERI  132 (185)
T ss_dssp             --CHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGG----SCHHHHTTE
T ss_pred             --cHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHh----ccHHHHhhe
Confidence              999999999999999999988 99999999999999888765    555666554

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=9.6e-20  Score=154.58  Aligned_cols=127  Identities=13%  Similarity=0.066  Sum_probs=109.8

Q ss_pred             HHHcCCCeeccccCCCCCEEEEEeccccCCC----CCCHHHHHHHHHHHHHHHhcc-------CCCCcCcEEEEEeCCCC
Q psy2694          63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHT----RYTLEIIYKSLILTLDNLLLD-------TQNQMNGLIFIVDWGNL  131 (262)
Q Consensus        63 ~l~~g~~~~Lpg~Dk~GrpViI~r~g~~dp~----~~s~~~~iR~~~~~lE~~l~e-------~~~qi~GivvIiDl~G~  131 (262)
                      +++..+...++|+|++||||++.++|++|++    ..+.++++|+.++.+|.+++.       ...+++|+++|+|++|+
T Consensus         4 ~i~~~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~   83 (199)
T d1olma3           4 VIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGL   83 (199)
T ss_dssp             HHHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred             HHHHHCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCC
Confidence            3445566667899999999999999999976    468899999999999987652       23457899999999999


Q ss_pred             CcccccCCcCCHHHHHHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhhH
Q psy2694         132 TLRQTSNNINSFKQVRTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSDL  191 (262)
Q Consensus       132 Slshl~~l~~~~~~lKk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (262)
                      |++|+++.  .++.+++++.++|++||+|.. +...+.|++++.+|+++|++++.=.++++
T Consensus        84 s~~~~~~~--~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI  142 (199)
T d1olma3          84 GLKHLWKP--AVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKI  142 (199)
T ss_dssp             CGGGGCHH--HHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTE
T ss_pred             chhhhccc--cHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccE
Confidence            99999988  899999999999999999988 99999999999999999998776555554

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.70  E-value=5.8e-18  Score=143.21  Aligned_cols=125  Identities=14%  Similarity=0.058  Sum_probs=104.6

Q ss_pred             HHHcCCCeeccccCCCCCEEEEEeccccCCC----CCCHHHHHHHHHHHHHHHhcc--------CCCCcCcEEEEEeCCC
Q psy2694          63 AIKDGLPGVLSNRDRKGRRILVFFANNWDHT----RYTLEIIYKSLILTLDNLLLD--------TQNQMNGLIFIVDWGN  130 (262)
Q Consensus        63 ~l~~g~~~~Lpg~Dk~GrpViI~r~g~~dp~----~~s~~~~iR~~~~~lE~~l~e--------~~~qi~GivvIiDl~G  130 (262)
                      ++...+...++|+|++||||++.++|++|++    ..+.++++++.++.+|.+++.        ...+++++++|+|++|
T Consensus         6 ~~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g   85 (203)
T d1auaa2           6 LIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKG   85 (203)
T ss_dssp             HHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred             HHHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCC
Confidence            3455667778899999999999999999875    358999999999999987642        2455789999999999


Q ss_pred             CCcccccCCcCCHHHHHHHHHHHhhcCCcccc-cccccchhhhhhhhhhHHHHHHHHHHhh
Q psy2694         131 LTLRQTSNNINSFKQVRTMLEVQVNISNFSSF-IKSGFSSFIKSGISSFIKSGISSFIKSD  190 (262)
Q Consensus       131 ~Slshl~~l~~~~~~lKk~l~ilQd~YPeR~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (262)
                      ++++|+++.   ...++++++++|++||++.. +..-+.||+++.+|+++|++++.=.++|
T Consensus        86 ~s~~~~~~~---~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~fl~~~t~~K  143 (203)
T d1auaa2          86 ISISSAYSV---MSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSK  143 (203)
T ss_dssp             CCHHHHHHH---HHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTT
T ss_pred             CChHHhhhH---HHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhhcCHHHhhc
Confidence            999987644   57889999999999999988 9999999999999999887765443333

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.8e-15  Score=107.77  Aligned_cols=50  Identities=34%  Similarity=0.445  Sum_probs=46.7

Q ss_pred             CCCCCCCCCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCccccccCCC
Q psy2694           4 RSDIDFNPYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHAEFFDNLTV   55 (262)
Q Consensus         4 ~PhL~~p~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~peif~~~dp   55 (262)
                      .||+  |.+.||.+|+|||||||||+++|++||++|++||+++|++|.+.+|
T Consensus        16 ~p~l--p~~~dD~~LlrFLRarkf~~~ka~~~l~~y~~~R~~~peif~~l~P   65 (66)
T d1r5la1          16 VPLA--PLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLHP   65 (66)
T ss_dssp             CCCS--SSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCCG
T ss_pred             CCcC--CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHCHHHccCCCC
Confidence            4888  5568999999999999999999999999999999999999999876

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.3e-11  Score=86.31  Aligned_cols=37  Identities=32%  Similarity=0.537  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCc
Q psy2694          11 PYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHA   47 (262)
Q Consensus        11 ~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~p   47 (262)
                      +..||.+|+||||||+|||++|.+|+.+|++||+++.
T Consensus        31 ~~~dd~~LlRFLrAr~fdv~kA~~ml~~~l~WR~~~~   67 (75)
T d1olma1          31 PNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD   67 (75)
T ss_dssp             SCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHcC
Confidence            4579999999999999999999999999999999985

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.91  E-value=6.1e-10  Score=83.63  Aligned_cols=37  Identities=30%  Similarity=0.386  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHCc
Q psy2694          11 PYNTDEFLTRFLYARKMNVDKSFDLLCNYITYRTNHA   47 (262)
Q Consensus        11 ~~~DD~~LLRFLRArKfdvekAkk~L~~yl~wR~~~p   47 (262)
                      +..||.+|+||||||+||+++|.+||.+|++||+++.
T Consensus        48 ~~~DD~~llRfLrAr~fd~~~a~~ml~~~l~wR~~~~   84 (93)
T d1auaa1          48 ERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG   84 (93)
T ss_dssp             SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC
Confidence            4589999999999999999999999999999999985