Psyllid ID: psy2699

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MHHIVDVRTELLVVSCDLETYARYRYPRSHERHCARITSNRENRDHILKCGVQNVAQVWNLCFLRFPSALFSTYLFYYDSAPKNTYKTVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKLSNRTFFAGTRDLTETTESPAIMTSVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPPPLHDWLLVGQIKFKSWKVGKFEVESFCQDQEQTPGYTKQTLSQGRSNLLMADLWRNTSLLELKGIRNIAFLHIPSEVGSNIYFQSSSVQLKGFIEERP
Secondary Structure (PSIPRED)
ccccEEEcEEEEEEEEccccHHHccccccccccccccccccccccccHHcccHHHHHHHHHHHcccccHHHcEEEEEEccccccccccEEEEEEEEEEEccccccccccccccHHHHHHHccccccccccccHHHHHHHHcccccEEEcccccccccccHHHHHccccccccccccccccccccEEEEEEEEEEcccccEEEEEcccccccccccccccccccccccccccEEEEcccccccccEEEEEEEEcccccccccccccEEccccccccEEEEEccccccccHHHHHccccccccccccEEEEEEEEEEEEEcccEEEEccccccccccccHHHHcccccHHHHHHHHccccccEEccccEEEEEEcccccccEEEEEEccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEEEccHHHHHHcccccccHHHHHHEcccccccHHHHHccHHHHHHHHHHHHHcccHHHHHEEEEEEccccccccEEEEHHHccEEEccccccccccccccHHHHHHHHcccHHccccccHHHHHHHHHHccccEEcccccccEccccHHHHHcccccccccccHHHHHHHcccEEEEEEEEEccccEEEEEcccccccccccEEccccHHHHHHHHccEEEEEcccccHHHcHEEEEEEEcccEEEEEEEEEEEEcccccccHHHHEccccccccccHHHHcccEEcccccccEEEEEEEEEEEEEEEEEEEEccccccccccccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHEcccccccccEEEEccccEEccEEcccc
Coil and Loop (DISEMBL)
MHHIVDVRTELLVVSCdletyaryryprsherhcaritsnrenrDHILKCGVQNVAQVWNLCFLRFPSALFSTYLfyydsapkntyktVEKKTLGifswknphltglssnrgEKFFTQIQKYPKEKEGKAKLRNWVFkeklsnrtffagtrdltettespaimtSVSVKLTDAQKAKIDDILNGFQVnwmnlrdvdtgellwqgnddlsladsehearvpkkILNCRAvsrelnfssvqpIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIesapesqmmpakvlnntteppplhdwllvgqikfkswkvgkFEVESfcqdqeqtpgytkqtlsQGRSNLLMADLWRNTSLLELKGIRNiaflhipsevgsniyfqSSSVQLkgfieerp
Flexible Loop (DISEMBL)
mhhivdvrtellvvsCDLEtyaryryprsherhcaritsnrenrDHILKCGVQNVAQVWNLCFLRFPSALFSTYLFYYDSAPKNTYKTVEKKTLGIFSWKNphltglssnrgeKFFTQIQkypkekegkaklrnwvfkeklsnrtffagtrdltettespaimtsvSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLsladsehearvpKKILNCRAVSrelnfssvqpiqmLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPPPLHDWLLVGQIKFKSWKVGKFEVESfcqdqeqtpgytkqTLSQGRSNLLMADLWRNTSLLELKGIRNIAFLHIPsevgsniyfqsssvqlkgfieerp
Low Complexity Region (SEG)
MHHIVDVRTELLVVSCDLETYARYRYPRSHERHCARITSNRENRDHILKCGVQNVAQVWNLCFLRFPSALFSTYLFYYDSAPKNTYKTVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKLSNRTFFAGTRDLTETTESPAIMTSVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPPPLHDWLLVGQIKFKSWKVGKFEVESFCQDQEQTPGYTKQTLSQGRSNLLMADLWRNTSLLELKGIRNIAFLHIPSEVGSNIYFQSSSVQLKGFIEERP
Disordered region (IsUnstruct)
***IVDVRTELLVVSCDLETYARYRYPRSHERHCARITSNRENRDHILKCGVQNVAQVWNLCFLRFPSALFSTYLFYYDSAPKNTYKTVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKY******KAKLRNWVFKEKLSNRTFFAGTRDLTET***PAIMTSVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLA*****ARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIE********************PLHDWLLVGQIKFKSWKVGKFEVESFCQD***************RSNLLMADLWRNTSLLELKGIRNIAFLHIPSEVGSNIYFQSSSVQL********
Disordered Region (DISOPRED)
**HIVDVRTELLVVSCDLETYARYRYPRSHERHC*******ENRDHILKCGVQNVAQVWNLCFLRFPSALFSTYLFYYDSAPKNTYKTVEKKTLGIFSWKNPHLTGLSSNRGEKFF****************************************TESPAIMTSVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIES**********VLNNTTEPPPLHDWLLVGQIKFKSWKVGKFEVESF*****************GRSNLLMADLWRNTSLLELKGIRNIAFLHIPSEVGSNIYFQSSSVQLKGFI****
Disordered Region (DISEMBL)
MHHIVDVRTELLVVSCDLETYARYRYPRSHERHCARITSNRENRDHILKCGVQNVAQVWNLCFLRFPSALFSTYLFYYDSAPKNTYKTVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKLSNRTFFAGTRDLTETTESPAIMTSVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPPPLHDWLLVGQIKFKSWKVGKFEVESFCQDQEQTPGYTKQTLSQGRSNLLMADLWRNTSLLELKGIRNIAFLHIPSEVGSNIYFQSSSVQLKGFIEERP
Disordered Region (DISPRO)
*HHIVDVRTELLVVSCDLETYARYRYPRSHERHCARITSNRENRDHILKCGVQNVAQVWNLCFLRFPSALFSTYLFYYDSAPKNTYKTVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKLSNRTFFAGTRDLTETTESPAIMTSVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPPPLHDWLLVGQIKFKSWKVGKFEVESFCQDQEQTPGYTKQTLSQGRSNLLMADLWRNTSLLELKGIRNIAFLHIPSEVGSNIYFQSSSVQLKGFIE***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHHIVDVRTELLVVSCDLETYARYRYPRSHERHCARITSNRENRDHILKCGVQNVAQVWNLCFLRFPSALFSTYLFYYDSAPKNTYKTVEKKTLGIFSWKNPHLTGLSSNRGEKFFTQIQKYPKEKEGKAKLRNWVFKEKLSNRTFFAGTRDLTETTESPAIMTSVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPPPLHDWLLVGQIKFKSWKVGKFEVESFCQDQEQTPGYTKQTLSQGRSNLLMADLWRNTSLLELKGIRNIAFLHIPSEVGSNIYFQSSSVQLKGFIEERP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
O55057	150	Retinal rod rhodopsin-sen	yes	N/A	0.366	0.973	0.594	8e-44
Q9XT54	150	Retinal rod rhodopsin-sen	yes	N/A	0.341	0.906	0.615	4e-43
O43924	150	Retinal rod rhodopsin-sen	yes	N/A	0.341	0.906	0.615	4e-43
Q95142	150	Retinal rod rhodopsin-sen	yes	N/A	0.341	0.906	0.615	4e-43
Q7PZ66	151	Probable cGMP 3',5'-cycli	yes	N/A	0.324	0.854	0.607	3e-40
B0WS18	151	Probable cGMP 3',5'-cycli	N/A	N/A	0.301	0.794	0.633	2e-39
Q29JT7	151	Probable cGMP 3',5'-cycli	yes	N/A	0.334	0.880	0.585	3e-39
B4GJ61	151	Probable cGMP 3',5'-cycli	N/A	N/A	0.334	0.880	0.585	3e-39
Q17FF6	151	Probable cGMP 3',5'-cycli	N/A	N/A	0.301	0.794	0.616	5e-39
B4LSE6	151	Probable cGMP 3',5'-cycli	N/A	N/A	0.316	0.834	0.598	1e-38

>sp|O55057|PDE6D_MOUSE Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Mus musculus GN=Pde6d PE=1 SV=1

 Score =  178 bits (451), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 88/148 (59%), Positives = 109/148 (73%), Gaps = 2/148 (1%)

Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  DIL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 3   AKDERARDILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 63  LNFSSAEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query: 293 L--NNTTEPPPLHDWLLVGQIKFKSWKV 318
           L  N   E     D LLV   K + + V
Sbjct: 123 LTGNVIIETKFFDDDLLVSTSKVRLFYV 150

Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation.
Mus musculus (taxid: 10090)

>sp|Q9XT54|PDE6D_CANFA Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Canis familiaris GN=PDE6D PE=2 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 105/138 (76%), Gaps = 2/138 (1%)

Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 3   AKDERAREILKGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 63  LNFSSAEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query: 293 L--NNTTEPPPLHDWLLV 308
           L  N   E     D LLV
Sbjct: 123 LTGNVIIETKFFDDDLLV 140

Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation.

Canis familiaris (taxid: 9615)

>sp|O43924|PDE6D_HUMAN Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Homo sapiens GN=PDE6D PE=1 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 105/138 (76%), Gaps = 2/138 (1%)

Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 3   AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 63  LNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query: 293 L--NNTTEPPPLHDWLLV 308
           L  N   E     D LLV
Sbjct: 123 LTGNVIIETKFFDDDLLV 140

Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation.

Homo sapiens (taxid: 9606)

>sp|Q95142|PDE6D_BOVIN Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Bos taurus GN=PDE6D PE=1 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 105/138 (76%), Gaps = 2/138 (1%)

Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 3   AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 63  LNFSSAEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query: 293 L--NNTTEPPPLHDWLLV 308
           L  N   E     D LLV
Sbjct: 123 LTGNVIIETKFFDDDLLV 140

Acts as a GTP specific dissociation inhibitor (GDI). Increases the affinity of ARL3 for GTP by several orders of magnitude and does so by decreasing the nucleotide dissociation rate. Stabilizes Arl3-GTP by decreasing the nucleotide dissociation.

Bos taurus (taxid: 9913)

>sp|Q7PZ66|PDE6D_ANOGA Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Anopheles gambiae GN=PrBP PE=3 SV=1

 Score =  166 bits (420), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 79/130 (60%), Positives = 99/130 (76%), Gaps = 1/130 (0%)

Query: 176 AKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNF 235
            K + ILNGFQ+NWM LRD DTG+++WQ N D S  D EHEA+VP KIL+ RAVSRE+NF
Sbjct: 7   GKGEKILNGFQINWMILRDADTGKIIWQENKDFSCPDVEHEAKVPVKILSLRAVSREINF 66

Query: 236 SSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLN- 294
           S+V+ ++  +L QKVLFK R++EEW F+ G+V P + NTWQS IE+APESQMMPAKVLN 
Sbjct: 67  STVEAMENFRLDQKVLFKGRIMEEWFFEMGWVSPNTTNTWQSTIEAAPESQMMPAKVLNG 126

Query: 295 NTTEPPPLHD 304
           N T     +D
Sbjct: 127 NVTIETSFYD 136

Anopheles gambiae (taxid: 7165)

>sp|B0WS18|PDE6D_CULQU Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Culex quinquefasciatus GN=PrBP PE=3 SV=1

 Score =  164 bits (414), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/120 (63%), Positives = 94/120 (78%)

Query: 176 AKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNF 235
           AK + I  GFQ+NW+ LRD DTG++LWQ N D S  D EHEARVP KIL+ RAVSRE+NF
Sbjct: 7   AKSEKIREGFQINWLILRDADTGKILWQENKDFSCPDVEHEARVPIKILDLRAVSREINF 66

Query: 236 SSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNN 295
           S+V+ ++  +L QKVLFK R++EEW F+ G+V P + NTWQS IE+APESQMMPAKVLN 
Sbjct: 67  STVEAMENFRLDQKVLFKGRIMEEWFFEMGWVSPNTTNTWQSTIEAAPESQMMPAKVLNG 126

Culex quinquefasciatus (taxid: 7176)

>sp|Q29JT7|PDE6D_DROPS Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Drosophila pseudoobscura pseudoobscura GN=PrBP PE=3 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 100/135 (74%), Gaps = 2/135 (1%)

Query: 171 TDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVS 230
           +D Q A  D I  GFQ+N+M LRD D+G+++WQ N D S  D EHEARVP KIL+ RAVS
Sbjct: 3   SDDQSAA-DKIQKGFQINYMILRDADSGKIIWQENKDFSAPDVEHEARVPVKILDMRAVS 61

Query: 231 RELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPA 290
           RE+NFS+V+ ++  +L QKVLFK R++EEW F+ GFV  ++ NTWQS IE+APESQMMPA
Sbjct: 62  REINFSTVESMENFRLDQKVLFKGRIMEEWFFEMGFVGASTTNTWQSTIEAAPESQMMPA 121

Query: 291 KVLN-NTTEPPPLHD 304
           KVLN N T     +D
Sbjct: 122 KVLNGNVTIQTSFYD 136

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|B4GJ61|PDE6D_DROPE Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Drosophila persimilis GN=PrBP PE=3 SV=1

 Score =  163 bits (412), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 100/135 (74%), Gaps = 2/135 (1%)

Query: 171 TDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVS 230
           +D Q A  D I  GFQ+N+M LRD D+G+++WQ N D S  D EHEARVP KIL+ RAVS
Sbjct: 3   SDDQSAA-DKIQKGFQINYMILRDADSGKIIWQENKDFSAPDVEHEARVPVKILDMRAVS 61

Query: 231 RELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPA 290
           RE+NFS+V+ ++  +L QKVLFK R++EEW F+ GFV  ++ NTWQS IE+APESQMMPA
Sbjct: 62  REINFSTVESMENFRLDQKVLFKGRIMEEWFFEMGFVGASTTNTWQSTIEAAPESQMMPA 121

Query: 291 KVLN-NTTEPPPLHD 304
           KVLN N T     +D
Sbjct: 122 KVLNGNVTIQTSFYD 136

Drosophila persimilis (taxid: 7234)

>sp|Q17FF6|PDE6D_AEDAE Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Aedes aegypti GN=PrBP PE=3 SV=1

 Score =  162 bits (409), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 74/120 (61%), Positives = 94/120 (78%)

Query: 176 AKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNF 235
           A+ + I  GFQ+NW+ LRD DTG+++WQ N D S  D EHEARVP KIL+ RAVSRE+NF
Sbjct: 7   ARSEKIREGFQINWLILRDADTGKIIWQENKDFSCPDVEHEARVPIKILDLRAVSREINF 66

Query: 236 SSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNN 295
           S+V+ ++  +L QKVLFK R++EEW F+ G+V P + NTWQS IE+APESQMMPAKVLN 
Sbjct: 67  STVESMENFRLDQKVLFKGRIMEEWFFEMGWVSPNTTNTWQSTIEAAPESQMMPAKVLNG 126

Aedes aegypti (taxid: 7159)

>sp|B4LSE6|PDE6D_DROVI Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta OS=Drosophila virilis GN=PrBP PE=3 SV=1

 Score =  161 bits (407), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 76/127 (59%), Positives = 95/127 (74%), Gaps = 1/127 (0%)

Query: 179 DDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSV 238
           D I  GFQ+N+M LRD DTG+++WQ N D S  D EHEARVP KIL+ RAVSRE+NFS++
Sbjct: 10  DKIQKGFQINYMILRDADTGKVIWQENKDFSAPDVEHEARVPVKILDMRAVSREINFSTI 69

Query: 239 QPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLN-NTT 297
           + ++  +L QKVLFK R++EEW F+ GFV   + NTWQS IE+APESQMMPAKVLN N T
Sbjct: 70  EAMENFRLDQKVLFKGRIMEEWFFEMGFVGANTTNTWQSTIEAAPESQMMPAKVLNGNVT 129

Query: 298 EPPPLHD 304
                +D
Sbjct: 130 IQTSFYD 136

Drosophila virilis (taxid: 7244)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
242017211	151	restnal rod rhodopsin-sensitive cGMP 3',	0.349	0.920	0.673	5e-48
307095096	159	phosphodiesterase 6D cGMPspecific [Triat	0.379	0.949	0.614	8e-48
336391166	147	retinal rod rhodopsin-sensitive cGMP 3',	0.296	0.802	0.771	1e-47
321471017	147	hypothetical protein DAPPUDRAFT_302807 [	0.336	0.911	0.691	2e-47
322800749	204	hypothetical protein SINV_80171 [Solenop	0.306	0.598	0.704	6e-46
442746903	147	Putative cgmp-phosphodiesterase delta su	0.359	0.972	0.648	7e-46
332017815	147	Retinal rod rhodopsin-sensitive cGMP 3',	0.298	0.809	0.714	1e-45
307195644	147	Retinal rod rhodopsin-sensitive cGMP 3',	0.306	0.829	0.696	2e-45
307175915	147	Retinal rod rhodopsin-sensitive cGMP 3',	0.298	0.809	0.714	2e-45
66523757	147	PREDICTED: retinal rod rhodopsin-sensiti	0.351	0.952	0.647	2e-45

>gi|242017211|ref|XP_002429085.1| restnal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase, putative [Pediculus humanus corporis] gi|212513949|gb|EEB16347.1| restnal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase, putative [Pediculus humanus corporis]

 Score =  198 bits (503), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 95/141 (67%), Positives = 113/141 (80%), Gaps = 2/141 (1%)

Query: 170 LTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAV 229
           + D    + +DIL+GFQVNWMNLRDVDTG++LWQGN+DLS+ D EHEARVPKKIL CRAV
Sbjct: 1   MEDTSVTRSEDILSGFQVNWMNLRDVDTGKILWQGNEDLSIPDVEHEARVPKKILKCRAV 60

Query: 230 SRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMP 289
           SRE+NFSSV+ ++  +L+QK+LFKNR LEEW F+FGFVIP S NTWQS+IE+APESQMMP
Sbjct: 61  SREINFSSVEQMKKFRLEQKILFKNRCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMP 120

Query: 290 AKVLNNTT--EPPPLHDWLLV 308
           A VLN     E     D LLV
Sbjct: 121 ANVLNGNVVIETKFFDDELLV 141

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307095096|gb|ADN29854.1| phosphodiesterase 6D cGMPspecific [Triatoma matogrossensis]

 Score =  197 bits (501), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 94/153 (61%), Positives = 118/153 (77%), Gaps = 2/153 (1%)

Query: 168 VKLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCR 227
           +++   ++ +  +ILNGFQVNWMNLRD DTG++LWQGN+DLSL D EHEARVPK+IL CR
Sbjct: 7   IEVNPEREQRAQEILNGFQVNWMNLRDADTGKILWQGNEDLSLPDKEHEARVPKQILKCR 66

Query: 228 AVSRELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQM 287
           AVSRE+NFSS +P++  +L+QKVLFK R LEEW F+FGFVIP S NTWQS+IE+APESQM
Sbjct: 67  AVSREINFSSTEPMEKFRLQQKVLFKGRCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQM 126

Query: 288 MPAKVLNNT--TEPPPLHDWLLVGQIKFKSWKV 318
           MPA VLN     E     D LLV + K + + +
Sbjct: 127 MPANVLNGNILIETSFFDDDLLVSKSKLRLYYI 159

Source: Triatoma matogrossensis

Species: Triatoma matogrossensis

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|336391166|ref|NP_001229570.1| retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta-like [Acyrthosiphon pisum] gi|239790658|dbj|BAH71877.1| ACYPI000717 [Acyrthosiphon pisum] gi|239790660|dbj|BAH71878.1| ACYPI000717 [Acyrthosiphon pisum] gi|239790662|dbj|BAH71879.1| ACYPI000717 [Acyrthosiphon pisum]

 Score =  196 bits (499), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 91/118 (77%), Positives = 104/118 (88%)

Query: 177 KIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFS 236
           K +DILNGFQVNWMNLRD DTG +LWQG +DLSL D EHEA+VPKKIL CRAVSRE+NFS
Sbjct: 4   KPEDILNGFQVNWMNLRDADTGVVLWQGTEDLSLPDKEHEAKVPKKILKCRAVSREINFS 63

Query: 237 SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLN 294
           SV+P++ L+L+QKVLFK R LEEW F+FGFVIP S NTWQS+IE+APESQMMPA VLN
Sbjct: 64  SVEPMEKLRLQQKVLFKGRCLEEWYFEFGFVIPNSTNTWQSLIEAAPESQMMPANVLN 121

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471017|gb|EFX81991.1| hypothetical protein DAPPUDRAFT_302807 [Daphnia pulex]

 Score =  196 bits (498), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 94/136 (69%), Positives = 112/136 (82%), Gaps = 2/136 (1%)

Query: 176 AKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNF 235
           +K +DIL+GF+VNWM+LR+VDTG+LLWQ +DDLS  D EHEARVPK ILNCRAVSRE+NF
Sbjct: 3   SKAEDILSGFRVNWMSLREVDTGKLLWQNSDDLSQPDVEHEARVPKSILNCRAVSREINF 62

Query: 236 SSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNN 295
           SS++P++  +L+QKVLFK R LEEW FDFGFVIP S NTWQSIIE+APESQMMPA++LN 
Sbjct: 63  SSIEPLENFRLEQKVLFKGRALEEWTFDFGFVIPNSTNTWQSIIEAAPESQMMPAQILNG 122

Query: 296 --TTEPPPLHDWLLVG 309
             T E     D LLV 
Sbjct: 123 NVTIETKFYDDTLLVS 138

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800749|gb|EFZ21653.1| hypothetical protein SINV_80171 [Solenopsis invicta]

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 86/122 (70%), Positives = 104/122 (85%)

Query: 176 AKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNF 235
           ++ +DIL GFQVNWMNLRD D+G++LWQGN+DLS+ D EHEARVPKKIL CRAVSRE+NF
Sbjct: 60  SRGEDILKGFQVNWMNLRDADSGKILWQGNEDLSVPDVEHEARVPKKILRCRAVSREINF 119

Query: 236 SSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNN 295
           SS +P++  +L+QKVLFK R LEEW F+FGFVIP S NTWQS+I++APESQMMPA VLN 
Sbjct: 120 SSAEPMERFRLEQKVLFKGRCLEEWFFEFGFVIPNSTNTWQSLIQAAPESQMMPANVLNG 179

Query: 296 TT 297
             
Sbjct: 180 NV 181

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442746903|gb|JAA65611.1| Putative cgmp-phosphodiesterase delta subunit [Ixodes ricinus]

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 94/145 (64%), Positives = 112/145 (77%), Gaps = 2/145 (1%)

Query: 176 AKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNF 235
           +K +DILNGF++NWMNLRD DTG++LWQG DDLS  D EHEARVPKKIL CRAVSRE+NF
Sbjct: 3   SKGEDILNGFKLNWMNLRDADTGKVLWQGTDDLSKPDVEHEARVPKKILKCRAVSREINF 62

Query: 236 SSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNN 295
           SSV+ ++  +L+QKVLFK R LEEW F+FGFVIP S NTWQS+IE+APESQMMPA VLN 
Sbjct: 63  SSVESMEKFRLEQKVLFKGRCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPANVLNG 122

Query: 296 TT--EPPPLHDWLLVGQIKFKSWKV 318
               E     D LLV   K + + +
Sbjct: 123 NVVIETKFFDDNLLVSTSKVRLYYI 147

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017815|gb|EGI58476.1| Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta [Acromyrmex echinatior]

 Score =  190 bits (482), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 102/119 (85%)

Query: 179 DDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSV 238
           +DIL GFQVNWMNLRD D+G++LWQGN+DLS+ D EHEARVPKKIL CRAVSRE+NFSS 
Sbjct: 6   EDILKGFQVNWMNLRDADSGKILWQGNEDLSVPDIEHEARVPKKILRCRAVSREINFSSA 65

Query: 239 QPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT 297
           +P++  +L+QKVLFK R LEEW F+FGFVIP S NTWQS+I++APESQMMPA +LN   
Sbjct: 66  EPMERFRLEQKVLFKGRCLEEWFFEFGFVIPNSTNTWQSLIQAAPESQMMPANILNGNV 124

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307195644|gb|EFN77486.1| Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta [Harpegnathos saltator]

 Score =  189 bits (481), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/122 (69%), Positives = 103/122 (84%)

Query: 176 AKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNF 235
           ++ +DIL GFQVNWMNLRD D G++LWQGN+DLS+ D EHEARVPKKIL CRA+SRE+NF
Sbjct: 3   SRGEDILKGFQVNWMNLRDADNGKILWQGNEDLSVPDMEHEARVPKKILRCRAISREINF 62

Query: 236 SSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNN 295
           SS +P++  +L+QKVLFK R LEEW F+FGFVIP S NTWQS+I++APESQMMPA VLN 
Sbjct: 63  SSAEPMERFRLEQKVLFKGRCLEEWFFEFGFVIPNSTNTWQSLIQAAPESQMMPANVLNG 122

Query: 296 TT 297
             
Sbjct: 123 NV 124

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307175915|gb|EFN65728.1| Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta [Camponotus floridanus]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/119 (71%), Positives = 101/119 (84%)

Query: 179 DDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSV 238
           +DIL GFQVNWMNLRD D G++LWQGN+DLS+ D EHEARVPKKIL CRAVSRE+NFSS 
Sbjct: 6   EDILKGFQVNWMNLRDADNGKILWQGNEDLSVPDVEHEARVPKKILRCRAVSREINFSSA 65

Query: 239 QPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT 297
           +P++  +L+QKVLFK R LEEW F+FGFVIP S NTWQS+I++APESQMMPA +LN   
Sbjct: 66  EPMERFRLEQKVLFKGRCLEEWFFEFGFVIPNSTNTWQSLIQAAPESQMMPANILNGNV 124

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66523757|ref|XP_394004.2| PREDICTED: retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta [Apis mellifera] gi|380022331|ref|XP_003695003.1| PREDICTED: retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta-like [Apis florea]

 Score =  189 bits (480), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 92/142 (64%), Positives = 111/142 (78%), Gaps = 2/142 (1%)

Query: 179 DDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSV 238
           +DIL GFQVNWMNLRD D+G++LWQGN+DLS+ + EHEARVPKKIL CRAVSRE+NFSS 
Sbjct: 6   EDILKGFQVNWMNLRDADSGKILWQGNEDLSVPEIEHEARVPKKILKCRAVSREINFSSA 65

Query: 239 QPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT- 297
           +P++  +L+QKVLFK R LEEW F+FGFVIP S NTWQS+I++APESQMMPA VLN    
Sbjct: 66  EPMERFRLEQKVLFKGRCLEEWFFEFGFVIPNSTNTWQSLIQAAPESQMMPANVLNGNVV 125

Query: 298 -EPPPLHDWLLVGQIKFKSWKV 318
            E     D LLV   K + + V
Sbjct: 126 IETKFFDDDLLVSTSKVRLFYV 147

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
ZFIN|ZDB-GENE-040718-463	150	pde6d "phosphodiesterase 6D, c	0.304	0.806	0.674	5.2e-42
RGD|1306204	150	Pde6d "phosphodiesterase 6D, c	0.366	0.973	0.594	6.6e-42
MGI|MGI:1270843	150	Pde6d "phosphodiesterase 6D, c	0.366	0.973	0.594	8.4e-42
UNIPROTKB|Q95142	150	PDE6D "Retinal rod rhodopsin-s	0.366	0.973	0.581	4.6e-41
UNIPROTKB|Q9XT54	150	PDE6D "Retinal rod rhodopsin-s	0.366	0.973	0.581	4.6e-41
UNIPROTKB|O43924	150	PDE6D "Retinal rod rhodopsin-s	0.366	0.973	0.581	4.6e-41
UNIPROTKB|E1BRH7	150	PDE6D "Uncharacterized protein	0.364	0.966	0.586	2.6e-40
UNIPROTKB|Q7PZ66	151	PrBP "Probable cGMP 3',5'-cycl	0.321	0.847	0.612	7.8e-39
UNIPROTKB|F1SMV2	150	PDE6D "Uncharacterized protein	0.329	0.873	0.609	2.6e-38
UNIPROTKB|B0WS18	151	PrBP "Probable cGMP 3',5'-cycl	0.306	0.807	0.634	4.3e-38

ZFIN|ZDB-GENE-040718-463 pde6d "phosphodiesterase 6D, cGMP-specific, rod, delta" [Danio rerio (taxid:7955)]

 Score = 445 (161.7 bits), Expect = 5.2e-42, P = 5.2e-42
 Identities = 83/123 (67%), Positives = 102/123 (82%)

Query:   171 TDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVS 230
             +D  +AK  +IL GF++NWMNLRD +TG++LWQG +DLSL   EHEARVPKKIL C+AVS
Sbjct:     3 SDEDRAK--EILKGFKLNWMNLRDAETGKVLWQGTEDLSLPGVEHEARVPKKILKCKAVS 60

Query:   231 RELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPA 290
             RELNFSSV+ ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA
Sbjct:    61 RELNFSSVEKLEKFRLEQKVFFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPA 120

Query:   291 KVL 293
              VL
Sbjct:   121 NVL 123

GO:0007601 "visual perception" evidence=IEA

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

RGD|1306204 Pde6d "phosphodiesterase 6D, cGMP-specific, rod, delta" [Rattus norvegicus (taxid:10116)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 88/148 (59%), Positives = 109/148 (73%)

Query:   173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
             A+  +  DIL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct:     3 AKDERARDILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query:   233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
             LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct:    63 LNFSSAEQMEKFRLEQKVFFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query:   293 L--NNTTEPPPLHDWLLVGQIKFKSWKV 318
             L  N   E     D LLV   K + + V
Sbjct:   123 LTGNVIIETKFFDDDLLVSTSKVRLFYV 150

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IEA;ISO

GO:0007601 "visual perception" evidence=IEA

GO:0033124 "regulation of GTP catabolic process" evidence=IEA;ISO

GO:0043086 "negative regulation of catalytic activity" evidence=ISO

MGI|MGI:1270843 Pde6d "phosphodiesterase 6D, cGMP-specific, rod, delta" [Mus musculus (taxid:10090)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 88/148 (59%), Positives = 109/148 (73%)

Query:   173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
             A+  +  DIL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct:     3 AKDERARDILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query:   233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
             LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct:    63 LNFSSAEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query:   293 L--NNTTEPPPLHDWLLVGQIKFKSWKV 318
             L  N   E     D LLV   K + + V
Sbjct:   123 LTGNVIIETKFFDDDLLVSTSKVRLFYV 150

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0007601 "visual perception" evidence=IEA

GO:0007602 "phototransduction" evidence=TAS

GO:0008152 "metabolic process" evidence=TAS

GO:0033124 "regulation of GTP catabolic process" evidence=IDA

GO:0043086 "negative regulation of catalytic activity" evidence=IDA

GO:0047555 "3',5'-cyclic-GMP phosphodiesterase activity" evidence=TAS

GO:0050896 "response to stimulus" evidence=IEA

UNIPROTKB|Q95142 PDE6D "Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta" [Bos taurus (taxid:9913)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 86/148 (58%), Positives = 109/148 (73%)

Query:   173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
             A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct:     3 AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query:   233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
             LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct:    63 LNFSSAEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query:   293 L--NNTTEPPPLHDWLLVGQIKFKSWKV 318
             L  N   E     D LLV   + + + V
Sbjct:   123 LTGNVIIETKFFDDDLLVSTSRVRLFYV 150

GO:0005095 "GTPase inhibitor activity" evidence=ISS

GO:0033124 "regulation of GTP catabolic process" evidence=ISS

GO:0050896 "response to stimulus" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

UNIPROTKB|Q9XT54 PDE6D "Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta" [Canis lupus familiaris (taxid:9615)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 86/148 (58%), Positives = 109/148 (73%)

Query:   173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
             A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct:     3 AKDERAREILKGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query:   233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
             LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct:    63 LNFSSAEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query:   293 L--NNTTEPPPLHDWLLVGQIKFKSWKV 318
             L  N   E     D LLV   + + + V
Sbjct:   123 LTGNVIIETKFFDDDLLVSTSRVRLFYV 150

GO:0005095 "GTPase inhibitor activity" evidence=ISS

GO:0033124 "regulation of GTP catabolic process" evidence=ISS

GO:0050896 "response to stimulus" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

UNIPROTKB|O43924 PDE6D "Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta" [Homo sapiens (taxid:9606)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 86/148 (58%), Positives = 109/148 (73%)

Query:   173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
             A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct:     3 AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 62

Query:   233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
             LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct:    63 LNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 122

Query:   293 L--NNTTEPPPLHDWLLVGQIKFKSWKV 318
             L  N   E     D LLV   + + + V
Sbjct:   123 LTGNVIIETKFFDDDLLVSTSRVRLFYV 150

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005095 "GTPase inhibitor activity" evidence=ISS

GO:0033124 "regulation of GTP catabolic process" evidence=ISS

UNIPROTKB|E1BRH7 PDE6D "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 88/150 (58%), Positives = 111/150 (74%)

Query:   171 TDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVS 230
             TD ++AK  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVS
Sbjct:     4 TD-ERAK--EILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVS 60

Query:   231 RELNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPA 290
             RELNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMM A
Sbjct:    61 RELNFSSAEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMSA 120

Query:   291 KVL--NNTTEPPPLHDWLLVGQIKFKSWKV 318
              VL  N   E     D LLV   + + + V
Sbjct:   121 NVLTGNVIIETKFYDDDLLVSTSRVRLFYV 150

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IEA

GO:0033124 "regulation of GTP catabolic process" evidence=IEA

UNIPROTKB|Q7PZ66 PrBP "Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta" [Anopheles gambiae (taxid:7165)]

 Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
 Identities = 79/129 (61%), Positives = 99/129 (76%)

Query:   177 KIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFS 236
             K + ILNGFQ+NWM LRD DTG+++WQ N D S  D EHEA+VP KIL+ RAVSRE+NFS
Sbjct:     8 KGEKILNGFQINWMILRDADTGKIIWQENKDFSCPDVEHEAKVPVKILSLRAVSREINFS 67

Query:   237 SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLN-N 295
             +V+ ++  +L QKVLFK R++EEW F+ G+V P + NTWQS IE+APESQMMPAKVLN N
Sbjct:    68 TVEAMENFRLDQKVLFKGRIMEEWFFEMGWVSPNTTNTWQSTIEAAPESQMMPAKVLNGN 127

Query:   296 TTEPPPLHD 304
              T     +D
Sbjct:   128 VTIETSFYD 136

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

UNIPROTKB|F1SMV2 PDE6D "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 410 (149.4 bits), Expect = 2.6e-38, P = 2.6e-38
 Identities = 81/133 (60%), Positives = 99/133 (74%)

Query:   188 NWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLK 247
             NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRELNFSS + ++  +L+
Sbjct:    18 NWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSAEQMEKFRLE 77

Query:   248 QKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVL--NNTTEPPPLHDW 305
             QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA VL  N   E     D 
Sbjct:    78 QKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDD 137

Query:   306 LLVGQIKFKSWKV 318
             LLV   + + + V
Sbjct:   138 LLVSTSRVRLFYV 150

GO:0033124 "regulation of GTP catabolic process" evidence=IEA

GO:0005095 "GTPase inhibitor activity" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0004114 "3',5'-cyclic-nucleotide phosphodiesterase activity" evidence=IEA

UNIPROTKB|B0WS18 PrBP "Probable cGMP 3',5'-cyclic phosphodiesterase subunit delta" [Culex quinquefasciatus (taxid:7176)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 78/123 (63%), Positives = 96/123 (78%)

Query:   176 AKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNF 235
             AK + I  GFQ+NW+ LRD DTG++LWQ N D S  D EHEARVP KIL+ RAVSRE+NF
Sbjct:     7 AKSEKIREGFQINWLILRDADTGKILWQENKDFSCPDVEHEARVPIKILDLRAVSREINF 66

Query:   236 SSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLN- 294
             S+V+ ++  +L QKVLFK R++EEW F+ G+V P + NTWQS IE+APESQMMPAKVLN 
Sbjct:    67 STVEAMENFRLDQKVLFKGRIMEEWFFEMGWVSPNTTNTWQSTIEAAPESQMMPAKVLNG 126

Query:   295 NTT 297
             N T
Sbjct:   127 NVT 129

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O55057	PDE6D_MOUSE	No assigned EC number	0.5945	0.3668	0.9733	yes	N/A
Q95142	PDE6D_BOVIN	No assigned EC number	0.6159	0.3417	0.9066	yes	N/A
Q29JT7	PDE6D_DROPS	No assigned EC number	0.5851	0.3341	0.8807	yes	N/A
Q7PZ66	PDE6D_ANOGA	No assigned EC number	0.6076	0.3241	0.8543	yes	N/A
Q9XT54	PDE6D_CANFA	No assigned EC number	0.6159	0.3417	0.9066	yes	N/A
O43924	PDE6D_HUMAN	No assigned EC number	0.6159	0.3417	0.9066	yes	N/A
Q18268	PDL1_CAEEL	No assigned EC number	0.5074	0.3341	0.8364	yes	N/A
Q9VLJ0	PDE6D_DROME	No assigned EC number	0.5777	0.3341	0.8807	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	398
pfam05351	156	pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit	7e-45

>gnl|CDD|203238 pfam05351, GMP_PDE_delta, GMP-PDE, delta subunit

 Score =  152 bits (385), Expect = 7e-45
 Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 10/132 (7%)

Query: 177 KIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADS---------EHEARVPKKILNCR 227
           + +  L G +     +RD +TG++L++   D S  D          E   + P K L  +
Sbjct: 1   RPEANLYGIKFTRFKIRDAETGKVLFEIAKDPSDEDLPEEDPNAGREVRYQFPPKFLKLK 60

Query: 228 AVSRELNFSS-VQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQ 286
            V   + F+   +P++  ++ ++  FK ++L+ ++F+FGF IP S NTW+ I E  P SQ
Sbjct: 61  TVGATVEFTVGDKPVKNFRMIERHYFKGQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQ 120

Query: 287 MMPAKVLNNTTE 298
           M+PA++L+   E
Sbjct: 121 MLPAEMLSGPYE 132

GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE)(EC:3.1.4.35). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport. Length = 156

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
PF05351	157	GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: I	100.0
KOG4038|consensus	150		100.0
KOG4037|consensus	240		100.0

>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3

Probab=100.00  E-value=1.5e-63  Score=438.30  Aligned_cols=138  Identities=33%  Similarity=0.592  Sum_probs=125.4

Q ss_pred             hHHhhhcCeeeceEEEEECCCCcEEEEecCCCCC----------CccccccccCcccccccceeeEEEEc-ccccccCce
Q psy2699         177 KIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSL----------ADSEHEARVPKKILNCRAVSRELNFS-SVQPIQMLK  245 (398)
Q Consensus       177 ~a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~----------Pe~E~eARFPpkFLrcKtVgrtIeFS-GdEPI~NFR  245 (398)
                      +++++++||+|+||+|||+|||+||||+++|.+.          +..++.+||||+||+||+|||+|+|| |++||+|||
T Consensus         1 ~~~~n~ygi~f~~f~iRD~dtg~vlfe~~~~~~~~~~~~~~~~~~~r~v~y~fp~~~L~~k~V~~~i~Fsvg~~pv~nFR   80 (157)
T PF05351_consen    1 KPEANIYGIEFTRFKIRDADTGKVLFEINKDPSDVEQLEPEDPNAGREVRYRFPPKFLKLKTVGREIEFSVGDEPVNNFR   80 (157)
T ss_dssp             -HHHHCCHEEEEEEEEEETTTTEEEEEEESSTTS--STT-----TTTEEEEEEEGGGGG-SEEEEEEEEEE-SS-ECCEE
T ss_pred             ChhhceeCcEEEEEEEEECCCCcEEEEecCCCCchhhcccccCCCceEEEEEcCHHHhcchhheEEEEEEECceeccccE
Confidence            4789999999999999999999999999999876          55678899999999999999999999 899999999


Q ss_pred             eEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC----CCCCccCCEEEEEEeee
Q psy2699         246 LKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT----EPPPLHDWLLVGQIKFK  314 (398)
Q Consensus       246 MIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv----ETkFFDGD~LIm~sk~~  314 (398)
                      |||||||||+|||+|||+||||||||+||||||||+|++++|||++||+||+    ||.|||||+||||||+.
T Consensus        81 mierhyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi~gp~et~sdSfyfv~~~Limhnka~  153 (157)
T PF05351_consen   81 MIERHYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMISGPYETKSDSFYFVDDKLIMHNKAR  153 (157)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHHCTTTTEEEEEEEEETTEEEEEEEEE
T ss_pred             eeEeeeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHHcCCCcceEEEEEEeCCEEEEEEEEE
Confidence            9999999999999999999999999999999999999999999999999977    66799999999999985

1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.

>KOG4038|consensus

Probab=100.00  E-value=3.8e-55  Score=379.95  Aligned_cols=143  Identities=58%  Similarity=1.006  Sum_probs=139.8

Q ss_pred             cchhHHhhhcCeeeceEEEEECCCCcEEEEecCCCCCCccccccccCcccccccceeeEEEEcccccccCceeEEEEeeC
Q psy2699         174 QKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFK  253 (398)
Q Consensus       174 ~~~~a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~Pe~E~eARFPpkFLrcKtVgrtIeFSGdEPI~NFRMIERHYFR  253 (398)
                      ..++|++|+.||++|||++||+|||+||||.++|.+.|+.||+||+|+++|+||+|+|+|+||+.+.|++|||.||+||+
T Consensus         4 ~~e~a~~il~gfklnwmnlrdaetgkilwq~ted~s~p~~ehearvpkkilkcravsreinfss~e~mekfrleqkvyfk   83 (150)
T KOG4038|consen    4 DQEAADRILKGFKLNWMNLRDAETGKILWQETEDFSAPDQEHEARVPKKILKCRAVSREINFSSIESMEKFRLEQKVYFK   83 (150)
T ss_pred             hHHHHHHHHhccceeeeEeecccccceeeecccccCCCcchhhhcccHHHHhhHhhhhhcccchHHHHHhhhhhheeeec
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC--CCCCccCCEEEEEEeeeee
Q psy2699         254 NRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT--EPPPLHDWLLVGQIKFKSW  316 (398)
Q Consensus       254 dqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv--ETkFFDGD~LIm~sk~~~~  316 (398)
                      |+++|+|.|+|||||||||||||+++|+||+||||||.+|+||+  ||+|||+|.||.++.|.-+
T Consensus        84 g~i~eewffefgfvipnstntwqs~ieaapesqmmpasvl~gnv~iet~fyd~dllvstsrvrly  148 (150)
T KOG4038|consen   84 GRIMEEWFFEFGFVIPNSTNTWQSTIEAAPESQMMPASVLNGNVTIETSFYDNDLLVSTSRVRLY  148 (150)
T ss_pred             ceeHHHhhhhhceeccCCcchHHHHHhhCchhccCChhhccCceEEEEEEecCCEEEEeeEEEEE
Confidence            99999999999999999999999999999999999999999999  9999999999999999765

>KOG4037|consensus

Probab=100.00  E-value=6.6e-50  Score=365.73  Aligned_cols=133  Identities=26%  Similarity=0.462  Sum_probs=123.6

Q ss_pred             hhcCeeeceEEEEECCCCcEEEEecCCCCCCc----------cccccc-----cCcccccccceeeEEEEc-ccccccCc
Q psy2699         181 ILNGFQVNWMNLRDVDTGELLWQGNDDLSLAD----------SEHEAR-----VPKKILNCRAVSRELNFS-SVQPIQML  244 (398)
Q Consensus       181 Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~Pe----------~E~eAR-----FPpkFLrcKtVgrtIeFS-GdEPI~NF  244 (398)
                      =.+.|+|++|+|||+|||.|||||+|++...+          .+.++|     |+|.||++|+||+||+|+ ||+||+||
T Consensus        82 Nvy~IdFtrFkIRDldsg~VLFEIaKPp~eteE~l~a~ae~lspnagRyVRYqFtPaFL~LktVGATVEFtVGd~PvnnF  161 (240)
T KOG4037|consen   82 NVYKIDFTRFKIRDLDSGTVLFEIAKPPVETEERLPANAEDLSPNAGRYVRYQFTPAFLRLKTVGATVEFTVGDKPVNNF  161 (240)
T ss_pred             ceEEeeeEEEEEeeccCCcEEEEecCCCCcchhhcchhhhccCCcccceEEEeechhHeeeeecccEEEEEeCCeecchh
Confidence            45789999999999999999999999874321          233455     999999999999999999 99999999


Q ss_pred             eeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCCCCC----CccCCEEEEEEee
Q psy2699         245 KLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPP----PLHDWLLVGQIKF  313 (398)
Q Consensus       245 RMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNvETk----FFDGD~LIm~sk~  313 (398)
                      ||||||||||+|||+|||+||||||+|+||||||||+|++++.|.+|||++|.||+    ||++|+||||+|-
T Consensus       162 RMIERHfFrdrLLK~FDFeFGFC~P~SkNtcEHIYeFP~Ls~~L~~eMI~~P~ETrSDSFYFV~nrLVMHNKA  234 (240)
T KOG4037|consen  162 RMIERHFFRDRLLKSFDFEFGFCIPSSKNTCEHIYEFPPLSEELMAEMINNPNETRSDSFYFVENRLVMHNKA  234 (240)
T ss_pred             hHHHHHHHHHHHHhhccceeeEeecCCCCcchhhhcCCCCCHHHHHHHhcCccccCCcceEEEccEEEEeccc
Confidence            99999999999999999999999999999999999999999999999999999997    9999999999985

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	398
1ksg_B	152	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		2e-44
1ksh_B	152	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		3e-44
1ksj_B	152	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Seme		1e-41
3rbq_A	195	Co-Crystal Structure Of Human Unc119 (Retina Gene 4		9e-05
4goj_C	240	The Crystal Structure Of Full Length Arl3gppnhp In		2e-04
3gqq_A	195	Crystal Structure Of The Human Retinal Protein 4 (U		3e-04

>pdb|1KSG|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 152

Iteration: 1
 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 5   AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 64
Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 65  LNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 124
Query: 293 L--NNTTEPPPLHDWLLV 308
           L  N   E     D LLV
Sbjct: 125 LTGNVIIETKFFDDDLLV 142

>pdb|1KSH|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 152

Iteration: 1
 Score =  176 bits (445), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 5   AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 64
Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 65  LNFSSTEQMEKFRLEQKVYFKGQXLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 124
Query: 293 L--NNTTEPPPLHDWLLV 308
           L  N   E     D LLV
Sbjct: 125 LTGNVIIETKFFDDDLLV 142

>pdb|1KSJ|B Chain B, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Semet) Length = 152

Iteration: 1
 Score =  167 bits (422), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 82/138 (59%), Positives = 101/138 (73%), Gaps = 2/138 (1%)
Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NW NLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 5   AKDERAREILRGFKLNWXNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 64
Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS +  +  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQ  PA V
Sbjct: 65  LNFSSTEQXEKFRLEQKVYFKGQXLEEWFFEFGFVIPNSTNTWQSLIEAAPESQXXPASV 124
Query: 293 L--NNTTEPPPLHDWLLV 308
           L  N   E     D LLV
Sbjct: 125 LTGNVIIETKFFDDDLLV 142

>pdb|3RBQ|A Chain A, Co-Crystal Structure Of Human Unc119 (Retina Gene 4) And An N-Terminal Transducin-Alpha Mimicking Peptide Length = 195

Iteration: 1
 Score = 44.7 bits (104), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 223 ILNCRAVSRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIES 281
            L  R V   + F+   +P+   ++ ++  F+N++L+ ++F FGF IP+S NT + I + 
Sbjct: 92  FLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDF 151
Query: 282 APESQMMPAKVLNNTTE 298
            P S+ + ++++ +  E
Sbjct: 152 PPLSEELISEMIRHPYE 168

>pdb|4GOJ|C Chain C, The Crystal Structure Of Full Length Arl3gppnhp In Complex With Unc119a Length = 240

Iteration: 1
 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 223 ILNCRAVSRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIES 281
            L  R V   + F+   +P+   ++ ++  F+N++L+ ++F FGF IP+S NT + I + 
Sbjct: 137 FLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDF 196
Query: 282 APESQMMPAKVLNNTTE 298
            P S+ + ++++ +  E
Sbjct: 197 PPLSEELISEMIRHPYE 213

>pdb|3GQQ|A Chain A, Crystal Structure Of The Human Retinal Protein 4 (Unc-119 Homolog A). Northeast Structural Genomics Consortium Target Hr3066a Length = 195

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 43/77 (55%), Gaps = 1/77 (1%)
Query: 223 ILNCRAVSRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIES 281
            L  R V   + F+   +P+   +  ++  F+N++L+ ++F FGF IP+S NT + I + 
Sbjct: 92  FLRLRQVGATVEFTVGDKPVNNFRXIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDF 151
Query: 282 APESQMMPAKVLNNTTE 298
            P S+ + ++ + +  E
Sbjct: 152 PPLSEELISEXIRHPYE 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
3t5g_B	152	Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic	2e-45
3gqq_A	195	Protein UNC-119 homolog A; human retinal protein 4	6e-29
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	7e-04

>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B* Length = 152

 Score =  152 bits (386), Expect = 2e-45
 Identities = 79/126 (62%), Positives = 99/126 (78%)

Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 5   AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 64

Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 65  LNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 124

Query: 293 LNNTTE 298
           L     
Sbjct: 125 LTGNVI 130

>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A* Length = 195

 Score =  110 bits (276), Expect = 6e-29
 Identities = 28/144 (19%), Positives = 70/144 (48%), Gaps = 14/144 (9%)

Query: 169 KLTDAQKAKIDDILNGFQVNWMNLRDVDTGELLWQ-----GNDDLSLADSEHEARVPKKI 223
           ++T       ++ +         +RD+D+G +L++      ++ L +   + +    + +
Sbjct: 25  RITGDYLCSPEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFV 84

Query: 224 --------LNCRAVSRELNFS-SVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNT 274
                   L  R V   + F+   +P+   ++ ++  F+N++L+ ++F FGF IP+S NT
Sbjct: 85  RYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIERHYFRNQLLKSFDFHFGFCIPSSKNT 144

Query: 275 WQSIIESAPESQMMPAKVLNNTTE 298
            + I +  P S+ + ++++ +  E
Sbjct: 145 CEHIYDFPPLSEELISEMIRHPYE 168

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 2e-10
 Identities = 67/478 (14%), Positives = 140/478 (29%), Gaps = 159/478 (33%)

Query: 2   HHIVDVRTELLVVSC-------------DLETYARYRYPRSHERHCARITSNRENRDHIL 48
           HH +D  T                    + +       P+S       I S  E  DHI+
Sbjct: 4   HHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-------ILSKEE-IDHII 55

Query: 49  KCGVQNVAQVWNLCFLRFPSALFSTYLFYY--DSAPKNTYKTVEKKTLGI-FSW------ 99
                               A+  T   ++   S  +   +   ++ L I + +      
Sbjct: 56  MS----------------KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK 99

Query: 100 ---KNPHL-TGLSSNRGEKFFTQIQKYPKE----KEGKAKLRNWVFKEKLSNRTFFAGTR 151
              + P + T +   + ++ +   Q + K      +   KLR  + + + +      G  
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG-- 157

Query: 152 DLTETTESPAIMT----SVSVKLTDAQKAKIDDILNGFQVNWMNLRDVDTGEL------- 200
                      +     +           K+   ++ F++ W+NL++ ++ E        
Sbjct: 158 -----------VLGSGKTWVALDV-CLSYKVQCKMD-FKIFWLNLKNCNSPETVLEMLQK 204

Query: 201 LWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFKNRVLEE- 259
           L    D    + S+H + +  +I + +A  R L           K  +  L    VL   
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL--------LKSKPYENCLL---VLLNV 253

Query: 260 WN------FDFG-------------FVIPASVNTWQSIIE-----SAPESQMMPAKVLNN 295
            N      F+                 + A+  T  S+       +  E + +  K L+ 
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313

Query: 296 TTE--PP------PLHDWLLVGQIK-----FKSWKVGKFE-----VESFCQDQEQTPGYT 337
             +  P       P    ++   I+     + +WK    +     +ES     E  P   
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE--PAEY 371

Query: 338 KQ---TLSQGRSNL-----LMADLW---------------RNTSLLELKGIRNIAFLH 372
           ++    LS    +      L++ +W                  SL+E +   +   + 
Sbjct: 372 RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.2 bits (90), Expect = 7e-04
 Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 9/30 (30%)

Query: 276 QSI--IES-----APESQMMPAKVLNNTTE 298
           Q++  +++     A +S   PA  +  T E
Sbjct: 20  QALKKLQASLKLYADDSA--PALAIKATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
3t5g_B	152	Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic	100.0
4goj_C	240	Protein UNC-119 homolog A; small G protein ARL, GD	100.0
3gqq_A	195	Protein UNC-119 homolog A; human retinal protein 4	100.0

>3t5g_B Retinal ROD rhodopsin-sensitive CGMP 3',5'-cyclic phosphodiesterase subunit delta...; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: b.1.18.8 PDB: 1ksg_B* 1ksj_B* 1ksh_B* 3t5i_B*

Probab=100.00  E-value=3.8e-66  Score=452.63  Aligned_cols=144  Identities=58%  Similarity=0.995  Sum_probs=140.2

Q ss_pred             cchhHHhhhcCeeeceEEEEECCCCcEEEEecCCCCCCccccccccCcccccccceeeEEEEcccccccCceeEEEEeeC
Q psy2699         174 QKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLFK  253 (398)
Q Consensus       174 ~~~~a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~Pe~E~eARFPpkFLrcKtVgrtIeFSGdEPI~NFRMIERHYFR  253 (398)
                      +.+|+++|++||+++||+|||+|||+||||+++|++.|+.|++|||||+||+||+|||+|+||+++||+|||||||||||
T Consensus         6 ~~~~~~~i~~Gfk~~~m~iRD~dtG~vLwe~~kd~s~~~~e~~aRfp~~~L~~~~V~~~i~Fs~~epi~nFRmierhyf~   85 (152)
T 3t5g_B            6 KDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYFK   85 (152)
T ss_dssp             CHHHHHHHHHHEEEEEEEEEETTTCCEEEEECSCTTCTTSEEEEEECGGGGGCSEEEEEEEEEESSCEEEEEEEEEEEET
T ss_pred             cchHHHHHhcCceEEEEEEEEcCCCcEEEEecCCCCCcccccceecCHHHhcchhheEEEEEeccccccccEEEEEEEEc
Confidence            44799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC--CCCCccCCEEEEEEeeeeee
Q psy2699         254 NRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT--EPPPLHDWLLVGQIKFKSWK  317 (398)
Q Consensus       254 dqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv--ETkFFDGD~LIm~sk~~~~~  317 (398)
                      |+|||+|||+||||||||+||||||||+||++|||||++||||+  ||+|||||+||.+++|.-+-
T Consensus        86 ~~lle~~dF~FGF~IP~StNTWe~i~E~~~~~~mlpa~~lsGnv~IeT~f~d~d~li~~s~vRifY  151 (152)
T 3t5g_B           86 GQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRLFY  151 (152)
T ss_dssp             TEEEEEEEEEEEEECTTEEEEEEEEEEBCCGGGSCCHHHHTTTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CceeeeEeeeeeeEcCCCCcccceEEEcCCccccCCHhHcCCcEEEEEEEecCCEEEEEeEEEEEE
Confidence            99999999999999999999999999999999999999999999  99999999999999997653

>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*

Probab=100.00  E-value=3e-55  Score=404.80  Aligned_cols=137  Identities=23%  Similarity=0.400  Sum_probs=121.0

Q ss_pred             HHhhhcCeeeceEEEEECCCCcEEEEecCCCCC---Cc-----cccccc-----cCcccccccceeeEEEEc-ccccccC
Q psy2699         178 IDDILNGFQVNWMNLRDVDTGELLWQGNDDLSL---AD-----SEHEAR-----VPKKILNCRAVSRELNFS-SVQPIQM  243 (398)
Q Consensus       178 a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~---Pe-----~E~eAR-----FPpkFLrcKtVgrtIeFS-GdEPI~N  243 (398)
                      .+.-.|||+|++|+|||+|||+||||+++|...   +.     ++.++|     |||+||+||+|||+|+|| |++||+|
T Consensus        79 ~~aN~y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~n  158 (240)
T 4goj_C           79 PEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNN  158 (240)
T ss_dssp             GGGCTTCCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEE
T ss_pred             ccccccCcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhc
Confidence            445679999999999999999999999998642   11     123444     999999999999999999 9999999


Q ss_pred             ceeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCCCCC----CccCCEEEEEEeee
Q psy2699         244 LKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPP----PLHDWLLVGQIKFK  314 (398)
Q Consensus       244 FRMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNvETk----FFDGD~LIm~sk~~  314 (398)
                      |||||||||||+|||+|||+||||||+|+||||||||+|++++||+++||+||+||+    |||||+||||||-.
T Consensus       159 FRmiERhyFrd~lLksfDFeFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~~p~Et~sdSFYFvddkLvMHNKAd  233 (240)
T 4goj_C          159 FRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKAD  233 (240)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEECTTCEEEEEEEEECCCCCHHHHHHHHHSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             ceeeehhhhcccchheeccccceeccCCcccceeEEecCCcchhhHHHHHhCCCceeeeeeEEECCEEEEcchhh
Confidence            999999999999999999999999999999999999999999999999999999775    89999999999953

>3gqq_A Protein UNC-119 homolog A; human retinal protein 4, HRG4, U119A_human, HR3066A, NESG, structural genomics, PSI-2, protein structure initiative; 1.95A {Homo sapiens} PDB: 3rbq_A*

Probab=100.00  E-value=1.5e-54  Score=391.12  Aligned_cols=137  Identities=23%  Similarity=0.399  Sum_probs=124.9

Q ss_pred             HHhhhcCeeeceEEEEECCCCcEEEEecCCCCCC--------ccccccc-----cCcccccccceeeEEEEc-ccccccC
Q psy2699         178 IDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLA--------DSEHEAR-----VPKKILNCRAVSRELNFS-SVQPIQM  243 (398)
Q Consensus       178 a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~P--------e~E~eAR-----FPpkFLrcKtVgrtIeFS-GdEPI~N  243 (398)
                      .+.=.+||+|++|+|||+|||+||||+++|.+.+        .+++++|     |||+||+||+|||+|+|| |++||+|
T Consensus        34 ~~aN~y~I~F~~F~IRD~etg~vLFei~k~~~~~~~~~~~~~~~~~~~R~vrYqF~~~~L~~k~V~~~i~Fsvgdkpi~n  113 (195)
T 3gqq_A           34 PEENIYKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNN  113 (195)
T ss_dssp             GGGCTTCCEEEEEEEEETTTCCEEEEEECCC--------------CTTCEEEEECCGGGGGCSEEEEEEEEECCSSCBCS
T ss_pred             ccccEeeeEEEEEEEeccCCCCEEEEecCCCCccccccccccCCccccceEEEEeCHHHhcchhhceEEEEeeCCccccc
Confidence            3445799999999999999999999999987543        2356775     999999999999999999 9999999


Q ss_pred             ceeEEEEeeCCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCCCCC----CccCCEEEEEEeee
Q psy2699         244 LKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTTEPP----PLHDWLLVGQIKFK  314 (398)
Q Consensus       244 FRMIERHYFRdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNvETk----FFDGD~LIm~sk~~  314 (398)
                      |||||||||||+|||+|||+||||||+|+||||||||+|++++.+..+||.+|+||+    ||++|+||||||-.
T Consensus       114 FRmierhyF~~~llk~~dF~FGFcIP~StNTWE~iye~P~l~~~~i~emi~~P~et~SDSFYFVd~kLvMHNKA~  188 (195)
T 3gqq_A          114 FRMIERHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIRHPYETQSDSFYFVDDRLVMHNKAD  188 (195)
T ss_dssp             EEEEEEEEETTEEEEEEEEECCCBCTTSEEEEEEEEECCCCCHHHHHHHHHSTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             cEEEEEEEeCCceeeEEeeeeeeEcCCCCccceeeeecCCCCHHHHHHHHhCCCccccceeEEECCEEEEcccee
Confidence            999999999999999999999999999999999999999999999999999999998    89999999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d1kshb_	149	b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens)	2e-57

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]} Length = 149

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  182 bits (464), Expect = 2e-57
 Identities = 79/125 (63%), Positives = 99/125 (79%)

Query: 173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRE 232
           A+  +  +IL GF++NWMNLRD +TG++LWQG +DLS+   EHEARVPKKIL C+AVSRE
Sbjct: 2   AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRE 61

Query: 233 LNFSSVQPIQMLKLKQKVLFKNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKV 292
           LNFSS + ++  +L+QKV FK + LEEW F+FGFVIP S NTWQS+IE+APESQMMPA V
Sbjct: 62  LNFSSTEQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASV 121

Query: 293 LNNTT 297
           L    
Sbjct: 122 LTGNV 126

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d1kshb_	149	GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}	100.0

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.6e-66  Score=450.39  Aligned_cols=143  Identities=59%  Similarity=1.004  Sum_probs=131.9

Q ss_pred             ccchhHHhhhcCeeeceEEEEECCCCcEEEEecCCCCCCccccccccCcccccccceeeEEEEcccccccCceeEEEEee
Q psy2699         173 AQKAKIDDILNGFQVNWMNLRDVDTGELLWQGNDDLSLADSEHEARVPKKILNCRAVSRELNFSSVQPIQMLKLKQKVLF  252 (398)
Q Consensus       173 ~~~~~a~~Il~GFkFnrFkIRDaDTGkVLFEi~kD~s~Pe~E~eARFPpkFLrcKtVgrtIeFSGdEPI~NFRMIERHYF  252 (398)
                      +..+|||+|++||+||||+|||+|||+||||+++|.+.|+.|+++||||+||+||+|||+|+||+++||+||||||||||
T Consensus         2 ~~~~~~~~i~~Gf~~~~~~iRD~etG~Vlfe~~~d~~~~~~e~~~~~p~~~L~~k~V~~~i~Fs~~e~i~~Frmierhyf   81 (149)
T d1kshb_           2 AKDERAREILRGFKLNWMNLRDAETGKILWQGTEDLSVPGVEHEARVPKKILKCKAVSRELNFSSTEQMEKFRLEQKVYF   81 (149)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEEETTTTEEEEEECSCTTCTTCCCEEEECGGGGGCSCEEEEEEEEESSCEEEEEEEEEEEE
T ss_pred             cchhHHHHHhcCceEEEEEEEeCCCCeEEEEecCCCCCCCceeeccCCHHHhccceeceEEEEecCcccccceEEEEEee
Confidence            34689999999999999999999999999999999999999999999999999999999999997789999999999999


Q ss_pred             CCccceeeeeeeeEEecCCCCcceEEEecCCCCCCCchhhhcCCC--CCCCccCCEEEEEEeeee
Q psy2699         253 KNRVLEEWNFDFGFVIPASVNTWQSIIESAPESQMMPAKVLNNTT--EPPPLHDWLLVGQIKFKS  315 (398)
Q Consensus       253 RdqLLKsFDFeFGFCIPnSTNTWEhIYEapplSqMLPAEmLSGNv--ETkFFDGD~LIm~sk~~~  315 (398)
                      ||+|||+|||+||||||||+||||||||+|++++|||++||+||+  ||+|||||+||||||+.-
T Consensus        82 r~~lle~~dFeFGF~IP~S~NTwe~iye~p~~~~~~~~~~l~g~~~~dt~yf~~d~Li~~nka~y  146 (149)
T d1kshb_          82 KGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLTGNVIIETKFFDDDLLVSTSRVRL  146 (149)
T ss_dssp             TTEEEEEEEEEEEEECTTEEEEEEEEEC-------CCSTTTTTSEEEEEEEEETTEEEEEEEEEE
T ss_pred             cCceeeEEEeeeeeEecCCCcchhheeecCCccccchHHHhcCCeEEEEEEEECCEEEEeeeEEE
Confidence            999999999999999999999999999999999999999999998  999999999999999864