Psyllid ID: psy2713

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140---
Protein Sequence
LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCSP
Secondary Structure (PSIPRED)
ccccccEEEEEEEccccccHHHHHHHHHHHcccccccEEEEHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHcccEEEEEEEEEccHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHcccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEcccHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
LRQFTPLVVALVGLPARGKTVLAHKLSRYltwtdhkskvfsVSAYRRKHLElynshdifrvdntegynirqlSAREAQEDATKWLKndgevaiidgtTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHnikqsmcsp
Flexible Loop (DISEMBL)
LRQFTPLVVAlvglpargktVLAHKLsryltwtdhkskvfSVSAYRRKHLelynshdifrvdntegynIRQLSAREAQEDATKwlkndgevaiidgttatmeKRKQIHDYFARKMGFKVLFVELIVQDEEIlehnikqsmcsp
Low Complexity Region (SEG)
LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCSP
Disordered region (IsUnstruct)
***FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAR***EDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEH*********
Disordered Region (DISOPRED)
***FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCS*
Disordered Region (DISEMBL)
LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCSP
Disordered Region (DISPRO)
LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCSP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	143	2.2.26 [Sep-21-2011]
Q91309	470	6-phosphofructo-2-kinase/	N/A	N/A	0.993	0.302	0.428	2e-26
P07953	471	6-phosphofructo-2-kinase/	yes	N/A	0.951	0.288	0.453	3e-26
Q91348	470	6-phosphofructo-2-kinase/	yes	N/A	0.979	0.297	0.448	7e-26
Q5NVT1	530	6-phosphofructo-2-kinase/	yes	N/A	0.916	0.247	0.413	2e-25
O60825	505	6-phosphofructo-2-kinase/	no	N/A	0.916	0.259	0.413	3e-25
P70266	471	6-phosphofructo-2-kinase/	yes	N/A	0.951	0.288	0.439	4e-25
P70265	519	6-phosphofructo-2-kinase/	no	N/A	0.916	0.252	0.406	5e-25
Q9JJH5	557	6-phosphofructo-2-kinase/	no	N/A	0.916	0.235	0.406	7e-25
O35552	555	6-phosphofructo-2-kinase/	no	N/A	0.916	0.236	0.406	1e-24
Q5R9C1	514	6-phosphofructo-2-kinase/	no	N/A	0.916	0.254	0.406	1e-24

>sp|Q91309|F26_LITCT 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Lithobates catesbeiana PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 63/147 (42%), Positives = 89/147 (60%), Gaps = 5/147 (3%)

Query: 1   LRQFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI 58
           + QFT  P ++ +VGLPARGKT ++ KL+RYL W    +KVF+V  YRR   + YN++  
Sbjct: 33  IPQFTNSPTMIVMVGLPARGKTYISKKLTRYLNWIGTPTKVFNVGQYRRDATQSYNNYQF 92

Query: 59  FRVDNTEGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGF 117
           FR DN E   IR+  A  A +D   +L + +G VA+ D T  T E+R  I   FA++ G+
Sbjct: 93  FRADNQEAMKIRKQCALHALKDVHTYLSREEGHVAVFDATNTTRERRSVILQ-FAKERGY 151

Query: 118 KVLFVELIVQDEEILEHNIKQ-SMCSP 143
           KV F+E I  D +I+  NI Q  + SP
Sbjct: 152 KVFFIESICDDPDIIAENITQVKLSSP 178

Synthesis and degradation of fructose 2,6-bisphosphate.
Lithobates catesbeiana (taxid: 8400)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 4EC: 6

>sp|P07953|F261_RAT 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 OS=Rattus norvegicus GN=Pfkfb1 PE=1 SV=3

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/141 (45%), Positives = 90/141 (63%), Gaps = 5/141 (3%)

Query: 1   LRQFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI 58
           + QFT  P +V +VGLPARGKT ++ KL+RYL W    +KVF++  YRR+ +  Y +++ 
Sbjct: 35  IPQFTNSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKVFNLGQYRREAVS-YRNYEF 93

Query: 59  FRVDNTEGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGF 117
           FR DNTE   IR+  A  A +D  K+L + +G VA+ D T  T E+R  I   FA++ G+
Sbjct: 94  FRPDNTEAQLIRKQCALAALKDVHKYLSREEGHVAVFDATNTTRERRSLILQ-FAKEHGY 152

Query: 118 KVLFVELIVQDEEILEHNIKQ 138
           KV F+E I  D EI+  NIKQ
Sbjct: 153 KVFFIESICNDPEIIAENIKQ 173

Synthesis and degradation of fructose 2,6-bisphosphate.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|Q91348|F26L_CHICK 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase OS=Gallus gallus PE=2 SV=2

 Score =  115 bits (289), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 90/145 (62%), Gaps = 5/145 (3%)

Query: 3   QFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
           QFT  P +V LVGL   GKT ++ KL+RYL W    ++VF+V  YRR+ ++ Y +++ FR
Sbjct: 35  QFTNCPTMVILVGLRRPGKTYISRKLTRYLNWIGMPTRVFNVGQYRREAVQSYKNYEFFR 94

Query: 61  VDNTEGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
            DN E   IR+  A  A +D   +L ++ G+VA+ D T  T E+R  I   FAR+ G+KV
Sbjct: 95  HDNEEAMQIRRQCALAALQDVRTYLSSEEGQVAVFDATNTTRERRALIMQ-FARENGYKV 153

Query: 120 LFVELIVQDEEILEHNIKQ-SMCSP 143
           LFVE I  D  I+E NIKQ  + SP
Sbjct: 154 LFVESICDDPAIIEENIKQVKLSSP 178

Synthesis and degradation of fructose 2,6-bisphosphate.

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|Q5NVT1|F262_PONAB 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 OS=Pongo abelii GN=PFKFB2 PE=2 SV=1

 Score =  114 bits (284), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 2/133 (1%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P ++ ++GLPARGKT ++ KL+RYL W    +KVF++  YRR+ ++ Y S+D FR DN 
Sbjct: 37  SPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSYDFFRHDNE 96

Query: 65  EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           E   IR+  A  A ED   +L + +G++A+ D T  T E+R  I + FA +  FKV FVE
Sbjct: 97  EAMKIRKQCALVALEDVKAYLTEENGQIAVFDATNTTRERRDMILN-FAEQNSFKVFFVE 155

Query: 124 LIVQDEEILEHNI 136
            +  D +++  NI
Sbjct: 156 SVCDDPDVIAANI 168

Synthesis and degradation of fructose 2,6-bisphosphate.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|O60825|F262_HUMAN 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 OS=Homo sapiens GN=PFKFB2 PE=1 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 55/133 (41%), Positives = 84/133 (63%), Gaps = 2/133 (1%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P ++ ++GLPARGKT ++ KL+RYL W    +KVF++  YRR+ ++ Y S+D FR DN 
Sbjct: 37  SPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSYDFFRHDNE 96

Query: 65  EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           E   IR+  A  A ED   +L + +G++A+ D T  T E+R  I + FA +  FKV FVE
Sbjct: 97  EAMKIRKQCALVALEDVKAYLTEENGQIAVFDATNTTRERRDMILN-FAEQNSFKVFFVE 155

Query: 124 LIVQDEEILEHNI 136
            +  D +++  NI
Sbjct: 156 SVCDDPDVIAANI 168

Synthesis and degradation of fructose 2,6-bisphosphate.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|P70266|F261_MOUSE 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1 OS=Mus musculus GN=Pfkfb1 PE=2 SV=2

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 62/141 (43%), Positives = 89/141 (63%), Gaps = 5/141 (3%)

Query: 1   LRQFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI 58
           + QFT  P +V +VGLPARGKT ++ KL+RYL W    +KVF++  YRR+ +  Y +++ 
Sbjct: 35  IPQFTNSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKVFNLGQYRREAVS-YRNYEF 93

Query: 59  FRVDNTEGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGF 117
           FR DN E   IR+  A  A +D  K+L + +G VA+ D T  T E+R  I   FA++ G+
Sbjct: 94  FRPDNMEAQLIRKQCALAALKDVHKYLSREEGHVAVFDATNTTRERRSLILQ-FAKEHGY 152

Query: 118 KVLFVELIVQDEEILEHNIKQ 138
           KV F+E I  D +I+  NIKQ
Sbjct: 153 KVFFIESICNDPDIIAENIKQ 173

Synthesis and degradation of fructose 2,6-bisphosphate.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|P70265|F262_MOUSE 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 OS=Mus musculus GN=Pfkfb2 PE=1 SV=2

 Score =  112 bits (281), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 2/133 (1%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P ++ ++GLPARGKT ++ KL+RYL W    +KVF++  YRR+ ++ Y S+D FR DN 
Sbjct: 40  SPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYQSYDFFRHDNE 99

Query: 65  EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           E   IR+  A  A ED   +   + G++A+ D T  T E+R  I + FA++  FKV FVE
Sbjct: 100 EAMKIRKQCALVALEDVKAYFTEESGQIAVFDATNTTRERRDMILN-FAKQNAFKVFFVE 158

Query: 124 LIVQDEEILEHNI 136
            +  D +++  NI
Sbjct: 159 SVCDDPDVIAANI 171

Synthesis and degradation of fructose 2,6-bisphosphate.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|Q9JJH5|F262_RAT 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2 OS=Rattus norvegicus GN=Pfkfb2 PE=2 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 2/133 (1%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P ++ ++GLPARGKT ++ KL+RYL W    +KVF++  YRR+ ++ Y S+D FR DN 
Sbjct: 40  SPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSYDFFRHDNE 99

Query: 65  EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           E   IR+  A  A ED   +   + G++A+ D T  T E+R  I + FA++  FKV FVE
Sbjct: 100 EAMKIRKQCALVALEDVKAYFTEESGQIAVFDATNTTRERRDMILN-FAKQNAFKVFFVE 158

Query: 124 LIVQDEEILEHNI 136
            +  D +++  NI
Sbjct: 159 SVCDDPDVIAANI 171

Synthesis and degradation of fructose 2,6-bisphosphate.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|O35552|F263_RAT 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 OS=Rattus norvegicus GN=Pfkfb3 PE=2 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 2/133 (1%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P V+ +VGLPARGKT ++ KL+RYL W    +KVF+V  YRR+ ++ Y+S++ FR DN 
Sbjct: 34  SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNE 93

Query: 65  EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           E   +R+  A  A  D   +L K  G++A+ D T  T E+R  I  +FA++  FK  F+E
Sbjct: 94  EAMRVRKQCALAALRDVKSYLTKEGGQIAVFDATNTTRERRHMIL-HFAKENDFKAFFIE 152

Query: 124 LIVQDEEILEHNI 136
            +  D  ++  NI
Sbjct: 153 SVCDDPTVVASNI 165

Synthesis and degradation of fructose 2,6-bisphosphate.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

>sp|Q5R9C1|F263_PONAB 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 3 OS=Pongo abelii GN=PFKFB3 PE=2 SV=2

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 2/133 (1%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P V+ +VGLPARGKT ++ KL+RYL W    +KVF+V  YRR+ ++ Y+S++ FR DN 
Sbjct: 34  SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNE 93

Query: 65  EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           E   +R+  A  A  D   +L K  G++A+ D T  T E+R  I  +FA++  FK  F+E
Sbjct: 94  EAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMIL-HFAKENDFKAFFIE 152

Query: 124 LIVQDEEILEHNI 136
            +  D  ++  NI
Sbjct: 153 SVCDDPTVVASNI 165

Synthesis and degradation of fructose 2,6-bisphosphate.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
193697719	492	PREDICTED: 6-phosphofructo-2-kinase/fruc	0.972	0.282	0.597	2e-47
242008998	465	6-phosphofructo-2-kinase/fructose-2,6-bi	0.937	0.288	0.585	3e-39
357604593	753	putative 6-phosphofructo-2-kinase/fructo	0.944	0.179	0.536	2e-37
91090384	500	PREDICTED: similar to 6-phosphofructo-2-	0.937	0.268	0.514	9e-35
270013394	454	hypothetical protein TcasGA2_TC011990 [T	0.972	0.306	0.507	1e-34
91088585	476	PREDICTED: similar to 6-phosphofructo-2-	0.965	0.289	0.482	1e-33
242011577	456	6-phosphofructo-2-kinase/fructose-2,6-bi	0.937	0.293	0.5	1e-33
332376621	476	unknown [Dendroctonus ponderosae]	0.972	0.292	0.492	6e-33
241591922	468	6-phosphofructo-2-kinase/fructose 2,6-bi	0.937	0.286	0.492	1e-32
427782491	461	Putative fructose-6-phosphate [Rhipiceph	0.930	0.288	0.496	3e-32

>gi|193697719|ref|XP_001944498.1| PREDICTED: 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase-like [Acyrthosiphon pisum]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 83/139 (59%), Positives = 117/139 (84%)

Query: 2   RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRV 61
           + F PLV+ +VGLPARGKT+LA+K+ +YL WT+HK+KVFSVS+YRRKH+ELY+SHD+FR 
Sbjct: 43  QHFVPLVITMVGLPARGKTILAYKIQQYLNWTNHKAKVFSVSSYRRKHIELYSSHDLFRK 102

Query: 62  DNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLF 121
           +N+E   IRQLSA+EAQ+DATKWL++ G+VAI+DGT  T  +R+ ++D+FA+ MG+KVLF
Sbjct: 103 ENSEAAEIRQLSAQEAQDDATKWLQDGGDVAILDGTHITQARRQTVYDHFAKVMGYKVLF 162

Query: 122 VELIVQDEEILEHNIKQSM 140
           +E +  DE ++E N+K+ M
Sbjct: 163 IECVCDDEMLIELNVKEVM 181

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008998|ref|XP_002425280.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, putative [Pediculus humanus corporis] gi|212509045|gb|EEB12542.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, putative [Pediculus humanus corporis]

 Score =  166 bits (420), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 101/135 (74%), Gaps = 1/135 (0%)

Query: 4   FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDN 63
           F  LVVA VGLPARGKTVLAHKL+RYL W    ++VFSV  Y RKH+ELY+ H++FRVDN
Sbjct: 6   FRSLVVAFVGLPARGKTVLAHKLTRYLQWIGISTEVFSVCDYCRKHVELYD-HNVFRVDN 64

Query: 64  TEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
            E   +R+ S  EA EDAT+WLK DG+VAI+DGT      RK +H+YF +++G+K+LFVE
Sbjct: 65  REAMKLREKSTFEAMEDATRWLKGDGKVAILDGTNPNRNYRKVLHEYFVKQLGYKLLFVE 124

Query: 124 LIVQDEEILEHNIKQ 138
            I  D+ ILE NI++
Sbjct: 125 CICDDDGILEKNIRE 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357604593|gb|EHJ64247.1| putative 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 [Danaus plexippus]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 73/136 (53%), Positives = 98/136 (72%), Gaps = 1/136 (0%)

Query: 1   LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
           + QF PL++ALVGLPARGK+ LAH+LSR+L W    +KVF  S YRR+H+ LY SHDIFR
Sbjct: 304 ISQFAPLLIALVGLPARGKSQLAHRLSRHLNWNGESTKVFDCSEYRRRHMALYGSHDIFR 363

Query: 61  VDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVL 120
            D+ +G  IR+ SA EA +DA  WLK    VAI DGT  T E+R++++D     MGF++L
Sbjct: 364 ADHQQGSAIRRQSAHEAVQDAMLWLKEGNSVAIFDGTNITREQRRELNDGVT-DMGFRIL 422

Query: 121 FVELIVQDEEILEHNI 136
           F+E + +D+E+LE NI
Sbjct: 423 FIECVCEDQELLERNI 438

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91090384|ref|XP_969497.1| PREDICTED: similar to 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form [Tribolium castaneum]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 92/134 (68%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P V+A+VGLPARGKT ++ KLSRYL W    +KVF++  YRR     Y +HD FR DN 
Sbjct: 72  SPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATTAYKNHDFFRPDNQ 131

Query: 65  EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
           E   +RQ  AREA +D  KWL++ GEVA+ D T +T+E+R+ I +Y   KMGFK+ FVE 
Sbjct: 132 EAMALRQQCAREALQDVCKWLESGGEVAVFDATNSTIERRRLIQEYVVDKMGFKLFFVES 191

Query: 125 IVQDEEILEHNIKQ 138
           I  D +I+E NIK+
Sbjct: 192 ICDDPQIIEQNIKE 205

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270013394|gb|EFA09842.1| hypothetical protein TcasGA2_TC011990 [Tribolium castaneum]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/140 (50%), Positives = 95/140 (67%), Gaps = 1/140 (0%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P V+A+VGLPARGKT ++ KLSRYL W    +KVF++  YRR     Y +HD FR DN 
Sbjct: 26  SPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATTAYKNHDFFRPDNQ 85

Query: 65  EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
           E   +RQ  AREA +D  KWL++ GEVA+ D T +T+E+R+ I +Y   KMGFK+ FVE 
Sbjct: 86  EAMALRQQCAREALQDVCKWLESGGEVAVFDATNSTIERRRLIQEYVVDKMGFKLFFVES 145

Query: 125 IVQDEEILEHNIKQ-SMCSP 143
           I  D +I+E NIK+  + SP
Sbjct: 146 ICDDPQIIEQNIKEVKVSSP 165

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91088585|ref|XP_973408.1| PREDICTED: similar to 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form [Tribolium castaneum] gi|270012251|gb|EFA08699.1| hypothetical protein TcasGA2_TC006370 [Tribolium castaneum]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/139 (48%), Positives = 97/139 (69%), Gaps = 1/139 (0%)

Query: 1   LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
           LRQF PL+VA+VGLP RGK+++A +LSRYL +T    KV+ +S YRRKH++ Y SH+IFR
Sbjct: 25  LRQFAPLMVAMVGLPGRGKSLMAKRLSRYLNYTGDVCKVYDISDYRRKHIKTYASHEIFR 84

Query: 61  VDNTEGYNIRQLSAREAQEDATKWLKNDG-EVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
            DN   + IRQ S REA E+A  WL+     VAI+DG   +  +R++I+D    ++GF+V
Sbjct: 85  ADNLPAWRIRQQSFREALEEAASWLQEPNHHVAILDGPNVSRAQREEIYDLVYCQLGFRV 144

Query: 120 LFVELIVQDEEILEHNIKQ 138
           +F+E + +D  +LE N K+
Sbjct: 145 MFIECVCEDPVLLERNFKE 163

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011577|ref|XP_002426525.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form, putative [Pediculus humanus corporis] gi|212510651|gb|EEB13787.1| 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase short form, putative [Pediculus humanus corporis]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 67/134 (50%), Positives = 89/134 (66%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P V+A+VGLPARGKT ++ KLSRYL W    +KVF++  YRR     Y SH+ FR DN 
Sbjct: 30  SPHVIAMVGLPARGKTYISKKLSRYLNWIGINTKVFNLGEYRRHATSAYKSHEFFRQDNL 89

Query: 65  EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
           E   IR    +EA +D  KWL+N GEVA+ D T +TME+RK IHD+   K+ +K+ FVE 
Sbjct: 90  EAMAIRTQCCKEALKDVCKWLENGGEVAVFDATNSTMERRKMIHDFVVCKLNYKLFFVES 149

Query: 125 IVQDEEILEHNIKQ 138
           +  D EI+E NI +
Sbjct: 150 VCDDPEIIEQNIME 163

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332376621|gb|AEE63450.1| unknown [Dendroctonus ponderosae]

 Score =  145 bits (365), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 91/140 (65%), Gaps = 1/140 (0%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P V+A+VGLPARGKT ++ KLSRYL W    ++VF++  YRR     Y SHD FR DN 
Sbjct: 42  SPHVIAMVGLPARGKTYISKKLSRYLNWIGINTRVFNLGEYRRHATSAYQSHDFFRPDNA 101

Query: 65  EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
           E   IR   A EA +D  +WL+N GEVA+ D T +T E+R+ I DY   KMGFK+ +VE 
Sbjct: 102 EAMAIRAQCAIEALKDVCQWLENGGEVAVFDATNSTPERRRVIQDYVVNKMGFKLFYVES 161

Query: 125 IVQDEEILEHNIKQ-SMCSP 143
           I  D +I+E NI +  + SP
Sbjct: 162 ICDDPQIIEQNIMEVKISSP 181

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241591922|ref|XP_002404032.1| 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase, putative [Ixodes scapularis] gi|215500320|gb|EEC09814.1| 6-phosphofructo-2-kinase/fructose 2,6-bisphosphatase, putative [Ixodes scapularis]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 88/134 (65%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
            P ++A+VGLPARGKT +A KL+RYL W   +++VF+V  YRR+  E Y SHD FR DN 
Sbjct: 37  VPHIIAMVGLPARGKTYIAKKLTRYLNWIGIQTRVFNVGEYRRQATEAYRSHDFFRADNA 96

Query: 65  EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
           E   IR   A +A ED  KWL+ +GEVA+ D T  T E+RK I+D    + GFK+ FVE 
Sbjct: 97  EAMAIRSKCALDALEDMCKWLETEGEVAVYDATNTTFERRKLIYDVVCERFGFKLFFVES 156

Query: 125 IVQDEEILEHNIKQ 138
              D +I+E NI++
Sbjct: 157 YCDDPKIIEANIRE 170

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427782491|gb|JAA56697.1| Putative fructose-6-phosphate [Rhipicephalus pulchellus]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 66/133 (49%), Positives = 89/133 (66%)

Query: 6   PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
           P V+A+VGLPARGKT +A KL+RYL W   +++VF+V  YRR+  E Y SHD FR DN E
Sbjct: 35  PHVIAMVGLPARGKTYIAKKLTRYLNWIGIQTRVFNVGEYRRQATEAYKSHDFFRADNAE 94

Query: 66  GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELI 125
              IR   A +A ED  KWL+++GEVA+ D T  T E+RK I++    + GFK+ FVE  
Sbjct: 95  AMAIRSKCALDALEDMCKWLESEGEVAVYDATNTTYERRKLIYNVVCERFGFKLFFVESY 154

Query: 126 VQDEEILEHNIKQ 138
             D +I+E NI++
Sbjct: 155 CDDPKIIEANIRE 167

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	143
FB|FBgn0027621	716	Pfrx "6-phosphofructo-2-kinase	0.972	0.194	0.432	3.4e-27
UNIPROTKB|F1LQX5	447	Pfkfb1 "6-phosphofructo-2-kina	0.972	0.310	0.455	7.4e-26
RGD|3307	471	Pfkfb1 "6-phosphofructo-2-kina	0.972	0.295	0.455	1.1e-25
UNIPROTKB|Q91348	470	Q91348 "6-phosphofructo-2-kina	0.979	0.297	0.448	4.1e-25
ZFIN|ZDB-GENE-051120-51	482	pfkfb4 "6-phosphofructo-2-kina	0.958	0.284	0.435	4.7e-25
ZFIN|ZDB-GENE-030131-5664	470	pfkfb1 "6-phosphofructo-2-kina	0.979	0.297	0.420	6.8e-25
MGI|MGI:107816	471	Pfkfb1 "6-phosphofructo-2-kina	0.972	0.295	0.441	1.2e-24
UNIPROTKB|E1BUK2	514	PFKFB3 "Uncharacterized protei	0.965	0.268	0.404	2.3e-24
UNIPROTKB|F5H5L1	184	PFKFB3 "6-phosphofructo-2-kina	0.930	0.722	0.407	3.3e-24
UNIPROTKB|E2RD05	462	PFKFB2 "Uncharacterized protei	0.965	0.298	0.404	3.9e-24

FB|FBgn0027621 Pfrx "6-phosphofructo-2-kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 314 (115.6 bits), Expect = 3.4e-27, P = 3.4e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
             TP V+A+VGLPARGKT ++ KL+RYL W    ++VF++  YRR     Y SH+ FR DN 
Sbjct:   253 TPHVIAMVGLPARGKTFISKKLARYLNWIGISTRVFNLGEYRRHATTAYKSHEFFRADNE 312

Query:    65 EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
             E   IR   A +A  D+  WL    G +A+ D T +T ++R+ IHD   ++ GF++ FVE
Sbjct:   313 EAMAIRNRCANQALHDSCDWLLSGQGSIAVFDATNSTRDRRQLIHDIVVKQHGFRLFFVE 372

Query:   124 LIVQDEEILEHNIKQ-SMCSP 143
              I  D +I+E NI +  + SP
Sbjct:   373 SICDDPQIIEQNILEVKVSSP 393

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=ISS;NAS

GO:0006000 "fructose metabolic process" evidence=ISS

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=ISS;NAS

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

UNIPROTKB|F1LQX5 Pfkfb1 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 294 (108.6 bits), Expect = 7.4e-26, P = 7.4e-26
 Identities = 66/145 (45%), Positives = 92/145 (63%)

Query:     3 QFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
             QFT  P +V +VGLPARGKT ++ KL+RYL W    +KVF++  YRR+ +  Y +++ FR
Sbjct:    13 QFTNSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKVFNLGQYRREAVS-YRNYEFFR 71

Query:    61 VDNTEGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
              DNTE   IR+  A  A +D  K+L + +G VA+ D T  T E+R  I   FA++ G+KV
Sbjct:    72 PDNTEAQLIRKQCALAALKDVHKYLSREEGHVAVFDATNTTRERRSLILQ-FAKEHGYKV 130

Query:   120 LFVELIVQDEEILEHNIKQ-SMCSP 143
              F+E I  D EI+  NIKQ  + SP
Sbjct:   131 FFIESICNDPEIIAENIKQVKLGSP 155

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=IEA

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=IEA

RGD|3307 Pfkfb1 "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 294 (108.6 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 66/145 (45%), Positives = 92/145 (63%)

Query:     3 QFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
             QFT  P +V +VGLPARGKT ++ KL+RYL W    +KVF++  YRR+ +  Y +++ FR
Sbjct:    37 QFTNSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKVFNLGQYRREAVS-YRNYEFFR 95

Query:    61 VDNTEGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
              DNTE   IR+  A  A +D  K+L + +G VA+ D T  T E+R  I   FA++ G+KV
Sbjct:    96 PDNTEAQLIRKQCALAALKDVHKYLSREEGHVAVFDATNTTRERRSLILQ-FAKEHGYKV 154

Query:   120 LFVELIVQDEEILEHNIKQ-SMCSP 143
              F+E I  D EI+  NIKQ  + SP
Sbjct:   155 FFIESICNDPEIIAENIKQVKLGSP 179

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=IDA

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=ISO;ISS;IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=ISO;ISS;TAS

GO:0019900 "kinase binding" evidence=IPI

GO:0031100 "organ regeneration" evidence=IEP

GO:0032868 "response to insulin stimulus" evidence=IEP

GO:0033133 "positive regulation of glucokinase activity" evidence=IMP

GO:0033762 "response to glucagon stimulus" evidence=IEP

GO:0042594 "response to starvation" evidence=IEP

GO:0042802 "identical protein binding" evidence=IDA;IPI

GO:0043540 "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex" evidence=ISO;ISS;IDA

GO:0046835 "carbohydrate phosphorylation" evidence=IDA

GO:0051384 "response to glucocorticoid stimulus" evidence=IEP

GO:0051591 "response to cAMP" evidence=IEP

GO:0070095 "fructose-6-phosphate binding" evidence=IDA

UNIPROTKB|Q91348 Q91348 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 4.1e-25, P = 4.1e-25
 Identities = 65/145 (44%), Positives = 90/145 (62%)

Query:     3 QFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
             QFT  P +V LVGL   GKT ++ KL+RYL W    ++VF+V  YRR+ ++ Y +++ FR
Sbjct:    35 QFTNCPTMVILVGLRRPGKTYISRKLTRYLNWIGMPTRVFNVGQYRREAVQSYKNYEFFR 94

Query:    61 VDNTEGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
              DN E   IR+  A  A +D   +L ++ G+VA+ D T  T E+R  I   FAR+ G+KV
Sbjct:    95 HDNEEAMQIRRQCALAALQDVRTYLSSEEGQVAVFDATNTTRERRALIMQ-FARENGYKV 153

Query:   120 LFVELIVQDEEILEHNIKQ-SMCSP 143
             LFVE I  D  I+E NIKQ  + SP
Sbjct:   154 LFVESICDDPAIIEENIKQVKLSSP 178

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=TAS

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005975 "carbohydrate metabolic process" evidence=TAS

GO:0006094 "gluconeogenesis" evidence=TAS

GO:0006096 "glycolysis" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

ZFIN|ZDB-GENE-051120-51 pfkfb4 "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 4.7e-25, P = 4.7e-25
 Identities = 61/140 (43%), Positives = 88/140 (62%)

Query:     6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
             P ++  VGLPARGKT ++ KL+RYL W D  +K F+V  YRR+ +++Y S + FR DN E
Sbjct:    52 PTLIVTVGLPARGKTYISKKLTRYLNWIDVPTKEFNVGQYRRECVKIYKSFEFFRPDNEE 111

Query:    66 GYNIRQLSAREAQEDATKWLKNDG-EVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
             G  IR+  A  A  D  ++L ++G +VA+ D T  T E+R  I   FA + GFKV FVE 
Sbjct:   112 GLKIRKQCALAALNDVRQFLTDEGGQVAVFDATNTTRERRDTIIR-FAEQNGFKVFFVES 170

Query:   125 IVQDEEILEHNIKQ-SMCSP 143
             + +D +++  NI Q  + SP
Sbjct:   171 VCEDPDVIAENIVQVKLGSP 190

GO:0003824 "catalytic activity" evidence=IEA

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=IEA

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=IEA

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

ZFIN|ZDB-GENE-030131-5664 pfkfb1 "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1" [Danio rerio (taxid:7955)]

 Score = 287 (106.1 bits), Expect = 6.8e-25, P = 6.8e-25
 Identities = 61/145 (42%), Positives = 90/145 (62%)

Query:     3 QFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
             QFT  P ++ +VGLPARGKT ++ KL+RYL W    ++VF++  YRR+ ++ Y +++ FR
Sbjct:    35 QFTNCPTMIVMVGLPARGKTYISKKLTRYLNWIGVPTQVFNLGQYRREVVQTYKNYEFFR 94

Query:    61 VDNTEGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
              DN E   IR+  A  A +D   +  K  G+VA+ D T  T ++R  I   FA++ G+KV
Sbjct:    95 PDNEEAMTIRRSCAASALKDIGNYFAKEQGQVAVFDATNTTRDRRGVIIS-FAKERGYKV 153

Query:   120 LFVELIVQDEEILEHNIKQ-SMCSP 143
              F+E I  D EI+E NI Q  + SP
Sbjct:   154 FFIESICDDPEIIEANIMQVKLSSP 178

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=IEA

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

MGI|MGI:107816 Pfkfb1 "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 64/145 (44%), Positives = 91/145 (62%)

Query:     3 QFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
             QFT  P +V +VGLPARGKT ++ KL+RYL W    +KVF++  YRR+ +  Y +++ FR
Sbjct:    37 QFTNSPTMVIMVGLPARGKTYISTKLTRYLNWIGTPTKVFNLGQYRREAVS-YRNYEFFR 95

Query:    61 VDNTEGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
              DN E   IR+  A  A +D  K+L + +G VA+ D T  T E+R  I   FA++ G+KV
Sbjct:    96 PDNMEAQLIRKQCALAALKDVHKYLSREEGHVAVFDATNTTRERRSLILQ-FAKEHGYKV 154

Query:   120 LFVELIVQDEEILEHNIKQ-SMCSP 143
              F+E I  D +I+  NIKQ  + SP
Sbjct:   155 FFIESICNDPDIIAENIKQVKLGSP 179

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=ISO

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=ISO

GO:0005524 "ATP binding" evidence=ISO

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019900 "kinase binding" evidence=ISO

GO:0033133 "positive regulation of glucokinase activity" evidence=ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0043540 "6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 1 complex" evidence=ISO

GO:0046835 "carbohydrate phosphorylation" evidence=ISO

GO:0070095 "fructose-6-phosphate binding" evidence=ISO

UNIPROTKB|E1BUK2 PFKFB3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 284 (105.0 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 57/141 (40%), Positives = 88/141 (62%)

Query:     5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
             +P V+ +VGLPARGKT ++ KL+RYL W    +KVF+V  YRR+ ++ Y+S+D FR DN 
Sbjct:    35 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKHYSSYDFFRPDNE 94

Query:    65 EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
             E   +R+  A  A  D   +L  + G++A+ D T  T E+R  I + FA++ GFKV F+E
Sbjct:    95 EAMKVRRQCALAALRDVKLYLTEEAGQIAVFDATNTTRERRGMILN-FAKENGFKVFFIE 153

Query:   124 LIVQDEEILEHNIKQ-SMCSP 143
              +  D  ++  N+ +  + SP
Sbjct:   154 SVCNDPNVVATNVMEVKLSSP 174

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=IEA

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=IEA

UNIPROTKB|F5H5L1 PFKFB3 "6-phosphofructo-2-kinase" [Homo sapiens (taxid:9606)]

 Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
 Identities = 55/135 (40%), Positives = 83/135 (61%)

Query:     5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
             +P V+ +VGLPARGKT ++ KL+RYL W    +KVF+V  YRR+ ++ Y+S++ FR DN 
Sbjct:    14 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNE 73

Query:    65 EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
             E   +R+  A  A  D   +L K  G++A+ D T  T E+R  I  +FA++  FK  F+E
Sbjct:    74 EAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMIL-HFAKENDFKAFFIE 132

Query:   124 LIVQDEEILEHNIKQ 138
              +  D  ++  NI Q
Sbjct:   133 SVCDDPTVVASNIMQ 147

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=IEA

UNIPROTKB|E2RD05 PFKFB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 280 (103.6 bits), Expect = 3.9e-24, P = 3.9e-24
 Identities = 57/141 (40%), Positives = 88/141 (62%)

Query:     5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
             +P ++ ++GLPARGKT ++ KL+RYL W    +KVF++  YRR+ ++ Y S+D FR DN 
Sbjct:    39 SPTLIVMIGLPARGKTYVSKKLTRYLNWIGVPTKVFNLGVYRREAVKSYKSYDFFRHDNE 98

Query:    65 EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
             E   IR+  A  A ED   +L + +G++A+ D T  T E+R  I   FA++  FKV FVE
Sbjct:    99 EAMKIRKQCALVALEDVKAYLTEENGQIAVFDATNTTRERRDMILS-FAKENSFKVFFVE 157

Query:   124 LIVQDEEILEHNIKQ-SMCSP 143
              +  D +++  NI +  + SP
Sbjct:   158 SVCDDPDVIAANILEVKVSSP 178

GO:0006003 "fructose 2,6-bisphosphate metabolic process" evidence=IEA

GO:0006000 "fructose metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004331 "fructose-2,6-bisphosphate 2-phosphatase activity" evidence=IEA

GO:0003873 "6-phosphofructo-2-kinase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	143
pfam01591	219	pfam01591, 6PF2K, 6-phosphofructo-2-kinase	6e-41
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-15
COG4639	168	COG4639, COG4639, Predicted kinase [General functi	5e-05
pfam13671	143	pfam13671, AAA_33, AAA domain	4e-04

>gnl|CDD|216591 pfam01591, 6PF2K, 6-phosphofructo-2-kinase

 Score =  135 bits (342), Expect = 6e-41
 Identities = 61/134 (45%), Positives = 82/134 (61%), Gaps = 2/134 (1%)

Query: 6   PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
             ++ +VGLPARGKT ++ KL+RYL W    +KVF+V  YRR  ++ Y+ ++ FR DN E
Sbjct: 10  KTLIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRRSAVKAYSDYEFFRPDNEE 69

Query: 66  GYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
           G  IR+  A  A  D   +L  + G+VAI D T  T E+RK I D FA + G KV F+E 
Sbjct: 70  GMKIREQCALAALNDVLAYLNEESGQVAIFDATNTTRERRKMILD-FAEENGLKVFFLES 128

Query: 125 IVQDEEILEHNIKQ 138
           I  D EI+  NIK 
Sbjct: 129 ICDDPEIIARNIKL 142

This enzyme occurs as a bifunctional enzyme with fructose-2,6-bisphosphatase. The bifunctional enzyme catalyzes both the synthesis and degradation of fructose-2,6-bisphosphate, a potent regulator of glycolysis. This enzyme contains a P-loop motif. Length = 219

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 69.9 bits (171), Expect = 6e-15
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 9/134 (6%)

Query: 7   LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEG 66
           L+V +VGLP RGKT +A ++ RY  W   +S++F   AYRR+ LE            T  
Sbjct: 216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRR-LE---RRGGAVSSPTGA 271

Query: 67  YNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKR----KQIHDYFARKMGFKVLFV 122
             +    A+    D T ++     VA++DGT  T  +R    + I +    +M  +V+FV
Sbjct: 272 AEVEFRIAKAIAHDMTTFICKTDGVAVLDGTNTTHARRMALLRAIRETGLIRMT-RVVFV 330

Query: 123 ELIVQDEEILEHNI 136
           E++  + E +  N+
Sbjct: 331 EVVNNNSETIRRNV 344

Length = 664

>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction only]

 Score = 40.5 bits (95), Expect = 5e-05
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 17/128 (13%)

Query: 8   VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGY 67
           +V L G    GK+  A +          ++ V S+   R       +  +  + D     
Sbjct: 4   LVVLRGASGSGKSTFAKENFL-------QNYVLSLDDLRLLLGVSASKENSQKND----- 51

Query: 68  NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127
              +L      +   + L+  G+  IID T    E R+++ D  A+  G+K+  +     
Sbjct: 52  ---ELVWDILYKQLEQRLRR-GKFTIIDATNLRREDRRKLID-LAKAYGYKIYAIVFDTP 106

Query: 128 DEEILEHN 135
            E  L  N
Sbjct: 107 LELCLARN 114

Length = 168

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 32/131 (24%), Positives = 49/131 (37%), Gaps = 14/131 (10%)

Query: 8   VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGY 67
           ++ +VGLP  GK+  A +L R L        V S    R+    L          +   Y
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGAV-----VLSSDTLRK---RLRGDGP----PDISYY 48

Query: 68  NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127
                   +   +  +     G   I+D T  + E+R ++ D  AR+ G  V  V L   
Sbjct: 49  ARASGRVYQRLLELAREALRAGRPVIVDATNLSREERARLID-LARRYGAPVRIVYLEA- 106

Query: 128 DEEILEHNIKQ 138
            EE+L     Q
Sbjct: 107 PEEVLRERNAQ 117

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	143
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.98
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.86
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.83
PRK06762	166	hypothetical protein; Provisional	99.82
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.81
COG4639	168	Predicted kinase [General function prediction only	99.81
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.8
KOG0234|consensus	438		99.8
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.78
PHA02530	300	pseT polynucleotide kinase; Provisional	99.78
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.77
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	99.76
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.75
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.75
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.73
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.72
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.7
COG0645	170	Predicted kinase [General function prediction only	99.7
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.69
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.69
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.69
PRK14527	191	adenylate kinase; Provisional	99.65
KOG3354|consensus	191		99.63
PRK00889	175	adenylylsulfate kinase; Provisional	99.63
PRK14532	188	adenylate kinase; Provisional	99.62
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.62
PRK14531	183	adenylate kinase; Provisional	99.61
PRK03846	198	adenylylsulfate kinase; Provisional	99.61
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.61
PRK05541	176	adenylylsulfate kinase; Provisional	99.61
PRK14529	223	adenylate kinase; Provisional	99.58
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.58
PLN02674	244	adenylate kinase	99.58
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.57
PRK00279	215	adk adenylate kinase; Reviewed	99.53
PLN02200	234	adenylate kinase family protein	99.52
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	99.51
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	99.51
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.5
KOG0635|consensus	207		99.5
KOG3079|consensus	195		99.5
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	99.49
PRK12339	197	2-phosphoglycerate kinase; Provisional	99.49
PRK01184	184	hypothetical protein; Provisional	99.48
PTZ00088	229	adenylate kinase 1; Provisional	99.48
PRK11545	163	gntK gluconate kinase 1; Provisional	99.47
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	99.45
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	99.44
PRK09825	176	idnK D-gluconate kinase; Provisional	99.44
PRK13808	333	adenylate kinase; Provisional	99.44
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	99.43
PRK14528	186	adenylate kinase; Provisional	99.43
PRK14530	215	adenylate kinase; Provisional	99.41
PLN02459	261	probable adenylate kinase	99.41
PRK00625	173	shikimate kinase; Provisional	99.37
PRK02496	184	adk adenylate kinase; Provisional	99.36
PRK14526	211	adenylate kinase; Provisional	99.36
PRK13948	182	shikimate kinase; Provisional	99.34
KOG3062|consensus	281		99.32
PRK00131	175	aroK shikimate kinase; Reviewed	99.32
PRK07261	171	topology modulation protein; Provisional	99.3
PRK13946	184	shikimate kinase; Provisional	99.3
PRK12337	475	2-phosphoglycerate kinase; Provisional	99.29
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	99.28
PRK06696	223	uridine kinase; Validated	99.27
PRK12338	319	hypothetical protein; Provisional	99.27
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	99.27
PRK07667	193	uridine kinase; Provisional	99.27
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	99.26
PRK13949	169	shikimate kinase; Provisional	99.26
PRK08233	182	hypothetical protein; Provisional	99.25
PRK00698	205	tmk thymidylate kinase; Validated	99.25
PTZ00301	210	uridine kinase; Provisional	99.25
PRK06217	183	hypothetical protein; Validated	99.24
PRK06547	172	hypothetical protein; Provisional	99.23
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	99.23
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	99.22
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	99.22
PRK13947	171	shikimate kinase; Provisional	99.22
PRK04040	188	adenylate kinase; Provisional	99.21
PRK04220	301	2-phosphoglycerate kinase; Provisional	99.2
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.2
PRK13973	213	thymidylate kinase; Provisional	99.2
KOG3347|consensus	176		99.19
PRK05057	172	aroK shikimate kinase I; Reviewed	99.18
PRK08118	167	topology modulation protein; Reviewed	99.18
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.18
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	99.17
PRK05480	209	uridine/cytidine kinase; Provisional	99.17
PRK08356	195	hypothetical protein; Provisional	99.17
PRK03839	180	putative kinase; Provisional	99.16
PRK06761	282	hypothetical protein; Provisional	99.15
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.15
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	99.15
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	99.15
KOG0780|consensus	483		99.14
PRK14730	195	coaE dephospho-CoA kinase; Provisional	99.14
KOG4238|consensus	627		99.13
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.13
PRK03731	171	aroL shikimate kinase II; Reviewed	99.1
PRK14737	186	gmk guanylate kinase; Provisional	99.1
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.1
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	99.1
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	99.1
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	99.09
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	99.09
PRK13975	196	thymidylate kinase; Provisional	99.08
PRK05439	311	pantothenate kinase; Provisional	99.07
PRK04182	180	cytidylate kinase; Provisional	99.06
PRK14733	204	coaE dephospho-CoA kinase; Provisional	99.06
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	99.03
KOG4622|consensus	291		99.03
PLN02924	220	thymidylate kinase	99.03
PRK10867	433	signal recognition particle protein; Provisional	99.03
PLN02199	303	shikimate kinase	99.02
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	99.01
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	99.01
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	99.01
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.01
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	99.01
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.99
PRK00300	205	gmk guanylate kinase; Provisional	98.99
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.99
PLN02842	505	nucleotide kinase	98.97
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.97
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	98.97
PLN02348	395	phosphoribulokinase	98.96
TIGR00959	428	ffh signal recognition particle protein. This mode	98.95
PRK14738	206	gmk guanylate kinase; Provisional	98.92
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.92
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.91
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	98.9
PRK13974	212	thymidylate kinase; Provisional	98.9
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.9
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.9
PRK10416	318	signal recognition particle-docking protein FtsY;	98.88
PRK14974	336	cell division protein FtsY; Provisional	98.88
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.88
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.86
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	98.86
cd03115	173	SRP The signal recognition particle (SRP) mediates	98.85
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.85
PRK14731	208	coaE dephospho-CoA kinase; Provisional	98.84
PLN02422	232	dephospho-CoA kinase	98.83
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	98.82
PRK14732	196	coaE dephospho-CoA kinase; Provisional	98.81
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	98.8
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.8
PRK07933	213	thymidylate kinase; Validated	98.78
PRK15453	290	phosphoribulokinase; Provisional	98.78
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	98.77
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	98.77
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	98.76
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.74
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	98.74
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	98.74
PLN02165	334	adenylate isopentenyltransferase	98.74
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.72
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	98.72
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	98.71
PRK07429	327	phosphoribulokinase; Provisional	98.7
PF00004	132	AAA: ATPase family associated with various cellula	98.69
KOG1533|consensus	290		98.69
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	98.68
PTZ00451	244	dephospho-CoA kinase; Provisional	98.66
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.66
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	98.64
PLN02318	656	phosphoribulokinase/uridine kinase	98.64
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.64
KOG1532|consensus	366		98.63
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.62
KOG1534|consensus	273		98.62
KOG2134|consensus	422		98.62
KOG3220|consensus	225		98.62
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	98.62
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	98.61
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	98.61
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	98.61
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	98.61
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	98.6
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	98.6
PRK06893	229	DNA replication initiation factor; Validated	98.6
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	98.59
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.59
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	98.59
cd01394	218	radB RadB. The archaeal protein radB shares simila	98.58
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	98.57
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.57
KOG3308|consensus	225		98.57
PRK00023	225	cmk cytidylate kinase; Provisional	98.56
PRK13976	209	thymidylate kinase; Provisional	98.56
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	98.56
PLN02796	347	D-glycerate 3-kinase	98.55
COG3709	192	Uncharacterized component of phosphonate metabolis	98.54
PRK08084	235	DNA replication initiation factor; Provisional	98.53
PLN02840	421	tRNA dimethylallyltransferase	98.53
PLN03046	460	D-glycerate 3-kinase; Provisional	98.53
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	98.53
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	98.52
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.51
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.5
PRK09435	332	membrane ATPase/protein kinase; Provisional	98.48
PLN02748	468	tRNA dimethylallyltransferase	98.47
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	98.47
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	98.47
TIGR02237	209	recomb_radB DNA repair and recombination protein R	98.47
PRK09087	226	hypothetical protein; Validated	98.47
smart00382	148	AAA ATPases associated with a variety of cellular	98.46
KOG3078|consensus	235		98.45
PRK05973	237	replicative DNA helicase; Provisional	98.45
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.44
COG4240	300	Predicted kinase [General function prediction only	98.44
PRK04296	190	thymidine kinase; Provisional	98.44
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.43
PRK08727	233	hypothetical protein; Validated	98.43
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.42
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.42
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.42
PHA00729	226	NTP-binding motif containing protein	98.42
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.42
PRK12377	248	putative replication protein; Provisional	98.41
PF13173	128	AAA_14: AAA domain	98.41
PRK14490	369	putative bifunctional molybdopterin-guanine dinucl	98.41
KOG0744|consensus	423		98.41
PRK13768	253	GTPase; Provisional	98.4
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	98.4
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.39
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	98.39
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	98.38
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	98.38
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	98.38
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.37
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	98.37
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	98.37
CHL00181	287	cbbX CbbX; Provisional	98.37
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.36
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	98.36
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.36
PRK06526	254	transposase; Provisional	98.35
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.34
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	98.34
PRK05642	234	DNA replication initiation factor; Validated	98.33
PRK08181	269	transposase; Validated	98.33
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.33
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	98.33
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.32
PRK13886	241	conjugal transfer protein TraL; Provisional	98.31
PRK08939	306	primosomal protein DnaI; Reviewed	98.3
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	98.3
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.3
PRK06620	214	hypothetical protein; Validated	98.3
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	98.29
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.28
cd03116	159	MobB Molybdenum is an essential trace element in t	98.28
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.28
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.28
PRK08116	268	hypothetical protein; Validated	98.27
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	98.27
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	98.27
cd00983	325	recA RecA is a bacterial enzyme which has roles in	98.25
PRK09183	259	transposase/IS protein; Provisional	98.25
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	98.25
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	98.25
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	98.24
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.24
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	98.24
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.23
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.23
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.23
PLN02772	398	guanylate kinase	98.23
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	98.23
KOG3877|consensus	393		98.22
PRK06835	329	DNA replication protein DnaC; Validated	98.22
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	98.22
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	98.22
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	98.21
COG1660	286	Predicted P-loop-containing kinase [General functi	98.2
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.2
PRK12422	445	chromosomal replication initiation protein; Provis	98.2
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.19
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	98.19
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	98.19
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	98.19
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.19
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	98.19
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	98.18
KOG1384|consensus	348		98.18
PRK09354	349	recA recombinase A; Provisional	98.18
PRK13695	174	putative NTPase; Provisional	98.18
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.17
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	98.17
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	98.17
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	98.16
PRK11823	446	DNA repair protein RadA; Provisional	98.15
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.15
PRK08099	399	bifunctional DNA-binding transcriptional repressor	98.14
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.14
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.13
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	98.13
KOG0730|consensus	693		98.12
PRK06067	234	flagellar accessory protein FlaH; Validated	98.12
cd03114	148	ArgK-like The function of this protein family is u	98.12
cd02034	116	CooC The accessory protein CooC, which contains a	98.11
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.11
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	98.11
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.11
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.1
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.1
KOG0733|consensus	802		98.1
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	98.1
PF13245	76	AAA_19: Part of AAA domain	98.09
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.09
PRK06921	266	hypothetical protein; Provisional	98.09
COG1855	604	ATPase (PilT family) [General function prediction	98.08
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	98.08
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.08
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.08
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.08
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	98.07
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	98.07
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.06
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.05
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.05
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.04
TIGR03707	230	PPK2_P_aer polyphosphate kinase 2, PA0141 family.	98.04
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	98.04
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.04
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	98.04
PRK04328	249	hypothetical protein; Provisional	98.04
PRK14489	366	putative bifunctional molybdopterin-guanine dinucl	98.04
PF05729	166	NACHT: NACHT domain	98.04
PLN03025	319	replication factor C subunit; Provisional	98.04
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.04
PRK07952	244	DNA replication protein DnaC; Validated	98.04
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.03
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.03
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.02
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.02
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	98.02
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	98.02
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.02
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.02
KOG0781|consensus	587		98.01
CHL00195	489	ycf46 Ycf46; Provisional	98.01
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.01
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	98.01
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	98.01
KOG0733|consensus	802		98.0
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	98.0
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	97.99
KOG0738|consensus	491		97.99
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.99
CHL00176	638	ftsH cell division protein; Validated	97.99
PRK14494	229	putative molybdopterin-guanine dinucleotide biosyn	97.99
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	97.99
KOG1969|consensus	877		97.99
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	97.98
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	97.98
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.98
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	97.98
TIGR03880	224	KaiC_arch_3 KaiC domain protein, AF_0351 family. T	97.98
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	97.97
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	97.97
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	97.97
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.97
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	97.96
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	97.96
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	97.96
COG3172	187	NadR Predicted ATPase/kinase involved in NAD metab	97.96
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.96
TIGR03708	493	poly_P_AMP_trns polyphosphate:AMP phosphotransfera	97.95
PHA02544	316	44 clamp loader, small subunit; Provisional	97.95
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.95
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	97.95
TIGR03709	264	PPK2_rel_1 polyphosphate:nucleotide phosphotransfe	97.95
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.95
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	97.94
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	97.94
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.94
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	97.94
PRK09112	351	DNA polymerase III subunit delta'; Validated	97.93
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.93
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	97.93
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.93
PRK07471	365	DNA polymerase III subunit delta'; Validated	97.92
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.92
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.91
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.91
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	97.9
PF07726	131	AAA_3: ATPase family associated with various cellu	97.9
COG1484	254	DnaC DNA replication protein [DNA replication, rec	97.9
PRK15455	644	PrkA family serine protein kinase; Provisional	97.9
PRK06851	367	hypothetical protein; Provisional	97.9
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	97.9
TIGR00382	413	clpX endopeptidase Clp ATP-binding regulatory subu	97.89
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	97.89
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.89
PF03976	228	PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR	97.88
PRK06871	325	DNA polymerase III subunit delta'; Validated	97.88
PHA03132	580	thymidine kinase; Provisional	97.88
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	97.88
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	97.88
PRK00089	292	era GTPase Era; Reviewed	97.88
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	97.88
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.88
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.87
PRK08699	325	DNA polymerase III subunit delta'; Validated	97.87
PRK07940	394	DNA polymerase III subunit delta'; Validated	97.87
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	97.87
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	97.86
PRK06851	367	hypothetical protein; Provisional	97.85
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	97.85
PRK08760	476	replicative DNA helicase; Provisional	97.84
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	97.83
KOG0739|consensus	439		97.83
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	97.83
PRK12402	337	replication factor C small subunit 2; Reviewed	97.83
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.82
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.82
PHA02575	227	1 deoxynucleoside monophosphate kinase; Provisiona	97.82
PRK04195	482	replication factor C large subunit; Provisional	97.81
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.81
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	97.81
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.8
PRK13342	413	recombination factor protein RarA; Reviewed	97.79
TIGR00665	434	DnaB replicative DNA helicase. This model describe	97.79
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.79
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	97.79
TIGR03600	421	phage_DnaB phage replicative helicase, DnaB family	97.79
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	97.79
PRK13833	323	conjugal transfer protein TrbB; Provisional	97.78
cd02035	217	ArsA ArsA ATPase functionas as an efflux pump loca	97.78
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.78
KOG0734|consensus	752		97.77
PHA02244	383	ATPase-like protein	97.77
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	97.77
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	97.77
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	97.77
COG1100	219	GTPase SAR1 and related small G proteins [General	97.76
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	97.76
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	97.76
PRK05564	313	DNA polymerase III subunit delta'; Validated	97.76
PRK05636	505	replicative DNA helicase; Provisional	97.75
PRK12608	380	transcription termination factor Rho; Provisional	97.75
PRK14087	450	dnaA chromosomal replication initiation protein; P	97.75
COG0802	149	Predicted ATPase or kinase [General function predi	97.75
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.74
COG1219	408	ClpX ATP-dependent protease Clp, ATPase subunit [P	97.74
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	97.74
COG1341	398	Predicted GTPase or GTP-binding protein [General f	97.74
COG1220	444	HslU ATP-dependent protease HslVU (ClpYQ), ATPase	97.74
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	97.73
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.73
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	97.73
PRK08006	471	replicative DNA helicase; Provisional	97.73
PRK13764	602	ATPase; Provisional	97.73
PRK10646	153	ADP-binding protein; Provisional	97.73
cd01128	249	rho_factor Transcription termination factor rho is	97.72
PRK14495	452	putative molybdopterin-guanine dinucleotide biosyn	97.71
PRK09519	790	recA DNA recombination protein RecA; Reviewed	97.71
KOG0731|consensus	774		97.71
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.71
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.71
PRK07993	334	DNA polymerase III subunit delta'; Validated	97.71
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.71
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	97.71
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.7
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.7
cd00550	254	ArsA_ATPase Oxyanion-translocating ATPase (ArsA).	97.7
COG3911	183	Predicted ATPase [General function prediction only	97.7
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	97.7
COG4136	213	ABC-type uncharacterized transport system, ATPase	97.7
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.7
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.69
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	97.69
PF08298	358	AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi	97.69
PF01078	206	Mg_chelatase: Magnesium chelatase, subunit ChlI; I	97.69
PRK03003	472	GTP-binding protein Der; Reviewed	97.69
PF09140	261	MipZ: ATPase MipZ; InterPro: IPR015223 Cell divisi	97.68
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.68
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	97.68
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.68
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.68
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.68
cd00881	189	GTP_translation_factor GTP translation factor fami	97.67
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.67
PRK09302	509	circadian clock protein KaiC; Reviewed	97.67
PHA02624	647	large T antigen; Provisional	97.67
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.67
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.67
PRK09376	416	rho transcription termination factor Rho; Provisio	97.67
KOG0071|consensus	180		97.67
PRK14491	597	putative bifunctional molybdopterin-guanine dinucl	97.66
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.66
PTZ00202	550	tuzin; Provisional	97.66
PRK08058	329	DNA polymerase III subunit delta'; Validated	97.66
TIGR00767	415	rho transcription termination factor Rho. Members	97.66
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	97.66
COG0489	265	Mrp ATPases involved in chromosome partitioning [C	97.66
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	97.66

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.98  E-value=4.3e-31  Score=183.78  Aligned_cols=137  Identities=45%  Similarity=0.719  Sum_probs=115.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .+.+|+|+|+||.|||++|++|+++|.|.|+++.+|+.+++|+.........++|++.+.++..+|+.++..+++++..+
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~   90 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIEW   90 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            46799999999999999999999999999999999999999999877666788899999999999999999999999999


Q ss_pred             Hh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhccC
Q psy2713          85 LK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCS  142 (143)
Q Consensus        85 l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~~  142 (143)
                      +. ++|.+.|+|++|.++++|+.+.+ .++++++.++|||+.|++++++++|+++++..
T Consensus        91 l~~~~G~VAI~DATN~T~~RR~~l~~-~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~  148 (222)
T PF01591_consen   91 LQEEGGQVAIFDATNSTRERRKMLVE-RFKEHGIKVLFIESICDDPEIIERNIREKKQN  148 (222)
T ss_dssp             HHTS--SEEEEES---SHHHHHHHHH-HHHHTT-EEEEEEEE---HHHHHHHHHHHHTT
T ss_pred             HhcCCCeEEEEeCCCCCHHHHHHHHH-HHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcC
Confidence            95 88999999999999999999999 99999999999999999999999999999875

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.86  E-value=3.1e-20  Score=121.76  Aligned_cols=121  Identities=24%  Similarity=0.337  Sum_probs=85.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN   87 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (143)
                      +|+|+|+|||||||+|+.|++.++     ..+++.|.++...........    .  ........ ....+...+.....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~~~l~   68 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSP----S--DYIEAEER-AYQILNAAIRKALR   68 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCC----C--CCHHHHHH-HHHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccc----h--hHHHHHHH-HHHHHHHHHHHHHH
Confidence            689999999999999999998876     566788888776543110000    0  00111111 12233333332223


Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      .|..+|+|.++...+.|+.|.+ +++.+++++.+|++.++.+++.+|+.+|...
T Consensus        69 ~g~~~vvd~~~~~~~~r~~~~~-~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~  121 (143)
T PF13671_consen   69 NGNSVVVDNTNLSREERARLRE-LARKHGYPVRVVYLDAPEETLRERLAQRNRE  121 (143)
T ss_dssp             TT-EEEEESS--SHHHHHHHHH-HHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred             cCCCceeccCcCCHHHHHHHHH-HHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence            4778999999999999999999 9999999999999999999999999999765

...

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.83  E-value=4.9e-19  Score=117.13  Aligned_cols=119  Identities=21%  Similarity=0.213  Sum_probs=86.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      ++.+|+|+|+|||||||+|+.|.++|...+.++.++..|.++.....   +.. |+.+  +    |... ...+..+...
T Consensus         1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~---dl~-fs~~--d----R~e~-~rr~~~~A~l   69 (156)
T PF01583_consen    1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA---DLG-FSKE--D----REEN-IRRIAEVAKL   69 (156)
T ss_dssp             S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT---T---SSHH--H----HHHH-HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC---CCC-CCHH--H----HHHH-HHHHHHHHHH
Confidence            46899999999999999999999999999999999999988766322   111 3221  1    1122 2335556667


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      +.+.|.++|+++....++.|+...+ .+..  ..++.|++.||.++|.+|+.+
T Consensus        70 l~~~G~ivIva~isp~~~~R~~~R~-~~~~--~~f~eVyv~~~~e~~~~RD~K  119 (156)
T PF01583_consen   70 LADQGIIVIVAFISPYREDREWARE-LIPN--ERFIEVYVDCPLEVCRKRDPK  119 (156)
T ss_dssp             HHHTTSEEEEE----SHHHHHHHHH-HHHT--TEEEEEEEES-HHHHHHHTTT
T ss_pred             HHhCCCeEEEeeccCchHHHHHHHH-hCCc--CceEEEEeCCCHHHHHHhCch
Confidence            7777999999999999999999998 7764  377888899999999999864

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK06762 hypothetical protein; Provisional

Probab=99.82  E-value=7.4e-19  Score=118.17  Aligned_cols=118  Identities=16%  Similarity=0.177  Sum_probs=85.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      +|.+|+|+|+|||||||+|+.|++.++   ....+++.|.++.......   +  ... ..  .      ...+.++...
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~---~--~~~-~~--~------~~~~~~~~~~   63 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVK---D--GPG-NL--S------IDLIEQLVRY   63 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhcccc---C--CCC-Cc--C------HHHHHHHHHH
Confidence            578999999999999999999999984   2345667788776543211   1  000 00  0      1112223333


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ....|..+|+|+++.....++.+.. +.+.++.++.+|++.+|.+++.+|+.+|..
T Consensus        64 ~~~~g~~vild~~~~~~~~~~~~~~-l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~  118 (166)
T PRK06762         64 GLGHCEFVILEGILNSDRYGPMLKE-LIHLFRGNAYTYYFDLSFEETLRRHSTRPK  118 (166)
T ss_pred             HHhCCCEEEEchhhccHhHHHHHHH-HHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence            3335788999999888888888888 888888888999999999999999999854

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.81  E-value=3.9e-19  Score=118.13  Aligned_cols=123  Identities=15%  Similarity=0.141  Sum_probs=95.6

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      .++++.+|||+|+|||||||+|..|.+.|...|+.+.++..|+.|.....   +.. |+.+  +..     .....+..+
T Consensus        19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~---dLg-Fs~e--dR~-----eniRRvaev   87 (197)
T COG0529          19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR---DLG-FSRE--DRI-----ENIRRVAEV   87 (197)
T ss_pred             hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC---CCC-CChH--HHH-----HHHHHHHHH
Confidence            35668899999999999999999999999999999999999998876432   222 3321  111     112335566


Q ss_pred             HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                      .+.+.++|.++|+......++.|++..+ ++.+.  +++-|++.||.++|.+|+-+.
T Consensus        88 Akll~daG~iviva~ISP~r~~R~~aR~-~~~~~--~FiEVyV~~pl~vce~RDpKG  141 (197)
T COG0529          88 AKLLADAGLIVIVAFISPYREDRQMARE-LLGEG--EFIEVYVDTPLEVCERRDPKG  141 (197)
T ss_pred             HHHHHHCCeEEEEEeeCccHHHHHHHHH-HhCcC--ceEEEEeCCCHHHHHhcCchH
Confidence            6777778999999999999999999888 77653  566677889999999998764

>COG4639 Predicted kinase [General function prediction only]

Probab=99.81  E-value=9.9e-19  Score=113.93  Aligned_cols=120  Identities=20%  Similarity=0.234  Sum_probs=86.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      ++.+++++|+|||||||+|+..       +.+..+++.|+++.....     ...+........+   ........+.+.
T Consensus         1 ~~~LvvL~G~~~sGKsT~ak~n-------~~~~~~lsld~~r~~lg~-----~~~~e~sqk~~~~---~~~~l~~~l~qr   65 (168)
T COG4639           1 MRILVVLRGASGSGKSTFAKEN-------FLQNYVLSLDDLRLLLGV-----SASKENSQKNDEL---VWDILYKQLEQR   65 (168)
T ss_pred             CceEEEEecCCCCchhHHHHHh-------CCCcceecHHHHHHHhhh-----chhhhhccccHHH---HHHHHHHHHHHH
Confidence            3679999999999999999876       566788999998876421     1011001110010   011112222233


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      +. .|...|+|+++..++.|..+.+ +++.|++...+|+++.|.+.|+.||..|-++
T Consensus        66 l~-~Gk~tiidAtn~rr~~r~~l~~-La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rq  120 (168)
T COG4639          66 LR-RGKFTIIDATNLRREDRRKLID-LAKAYGYKIYAIVFDTPLELCLARNKLRERQ  120 (168)
T ss_pred             HH-cCCeEEEEcccCCHHHHHHHHH-HHHHhCCeEEEEEEeCCHHHHHHHhhccchh
Confidence            33 5899999999999999999999 9999999999999999999999999766543

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.80  E-value=2.6e-18  Score=123.43  Aligned_cols=121  Identities=21%  Similarity=0.250  Sum_probs=78.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      .+|+|+|+|||||||+|+.|++.+...+.+..+++.+.....      ... |.. .......+.     .+...++...
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~------~~~-y~~-~~~Ek~~R~-----~l~s~v~r~l   68 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID------RND-YAD-SKKEKEARG-----SLKSAVERAL   68 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T------TSS-S---GGGHHHHHH-----HHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc------hhh-hhc-hhhhHHHHH-----HHHHHHHHhh
Confidence            389999999999999999999999888888888887665521      122 321 111112222     2222222222


Q ss_pred             cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      +...+||+|+.|+.+.+|..++. +++.++..+.+|++.||.+.|++||.+|...
T Consensus        69 s~~~iVI~Dd~nYiKg~RYelyc-lAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~  122 (270)
T PF08433_consen   69 SKDTIVILDDNNYIKGMRYELYC-LARAYGTTFCVIYCDCPLETCLQRNSKRPEP  122 (270)
T ss_dssp             TT-SEEEE-S---SHHHHHHHHH-HHHHTT-EEEEEEEE--HHHHHHHHHHTT-S
T ss_pred             ccCeEEEEeCCchHHHHHHHHHH-HHHHcCCCEEEEEECCCHHHHHHhhhccCCC
Confidence            33589999999999999999999 9999999999999999999999999998753

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>KOG0234|consensus

Probab=99.80  E-value=1.7e-18  Score=129.04  Aligned_cols=135  Identities=43%  Similarity=0.729  Sum_probs=123.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .+.+|+|+|+|++|||.++.++.+++.|.++++..++...+++.........++|.+++.++..++..++..++.++..+
T Consensus        27 ~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~~~~  106 (438)
T KOG0234|consen   27 SKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDLLHF  106 (438)
T ss_pred             CceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhHHHH
Confidence            36799999999999999999999999999999999999999998776554568899999999999999999999999998


Q ss_pred             H-hcCCeEEEEeCCchhHHHHHHHHHHHHh-hcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 L-KNDGEVAIIDGTTATMEKRKQIHDYFAR-KMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      + ...|.++|+|+++.+++.|..+.. .++ +.++.+.+|+..|++++++.+|++..+
T Consensus       107 l~~~~g~vai~Datnttr~rrk~i~~-~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~  163 (438)
T KOG0234|consen  107 LIKENGQVAIFDATNTTRERRKRIID-FAEREAGFKVFFIESVCNDPNLINNNIREVK  163 (438)
T ss_pred             hhccCCceEEecCCCCCHHHHHHHHH-HHhhcCCceEEEEEeecCCchhHHhhhhhhh
Confidence            8 577999999999999999999999 996 789999999999999999999999443

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.78  E-value=7.8e-18  Score=134.27  Aligned_cols=132  Identities=29%  Similarity=0.527  Sum_probs=104.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      +..+|+|+|+||+||||+|+.|+++++|.++++++++.+.+++.....  ..+++++.+..  ......+..+..++..+
T Consensus       214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~--~~~~~~~~~~~--~~e~~~~~~~~~d~~~~  289 (664)
T PTZ00322        214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERR--GGAVSSPTGAA--EVEFRIAKAIAHDMTTF  289 (664)
T ss_pred             cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccC--CCCcCCCCCHH--HHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999999886421  22323322221  22233445556667777


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC----EEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF----KVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      +.+.|.++|+|++|.+...|..+.+ .+++.+.    .+++|++.|++++.+++|+.|.+.
T Consensus       290 v~~~GgvaI~DatN~t~~rR~~~~~-~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~  349 (664)
T PTZ00322        290 ICKTDGVAVLDGTNTTHARRMALLR-AIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKE  349 (664)
T ss_pred             HhcCCCEEEEeCCCCCHHHHHHHHH-HHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHh
Confidence            7655779999999999999999998 8888764    799999999999999999988654

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.78  E-value=1.2e-17  Score=122.02  Aligned_cols=123  Identities=22%  Similarity=0.286  Sum_probs=86.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHH-HH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDA-TK   83 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~   83 (143)
                      ++.+|+++|+|||||||+|+.|++.+.    ....++.|.++........ ...+.........+     .....+. .+
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~   70 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGE-WGEYKFTKEKEDLV-----TKAQEAAALA   70 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCc-ccccccChHHHHHH-----HHHHHHHHHH
Confidence            468999999999999999999999973    2356677877766433110 11111111111111     1112222 22


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+. .|..+|+|+++..++.++.|.+ +++++++.+.++++.+|.+++.+|+.+|.
T Consensus        71 ~l~-~g~~vIid~~~~~~~~~~~~~~-la~~~~~~~~~v~l~~~~e~~~~R~~~R~  124 (300)
T PHA02530         71 ALK-SGKSVIISDTNLNPERRRKWKE-LAKELGAEFEEKVFDVPVEELVKRNRKRG  124 (300)
T ss_pred             HHH-cCCeEEEeCCCCCHHHHHHHHH-HHHHcCCeEEEEEeCCCHHHHHHHHHccC
Confidence            333 4678999999999999999999 99999999988999999999999999994

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.77  E-value=1e-17  Score=119.45  Aligned_cols=118  Identities=18%  Similarity=0.260  Sum_probs=86.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN   87 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (143)
                      +|+|+|+|||||||+|+.|++++...+.+...++.|.++.....       +.....  ...+     .....++..+..
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e--~~~~-----~~~~~~i~~~l~   66 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYE--EFIR-----DSTLYLIKTALK   66 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhH--HHHH-----HHHHHHHHHHHh
Confidence            58999999999999999999999877777788877766554210       111000  0111     111222222223


Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+..||+|+++.....|..+.. +++.++.++.+|++.+|.+++.+||.+|..
T Consensus        67 ~~~~VI~D~~~~~~~~r~~l~~-~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~  118 (249)
T TIGR03574        67 NKYSVIVDDTNYYNSMRRDLIN-IAKEYNKNYIIIYLKAPLDTLLRRNIERGE  118 (249)
T ss_pred             CCCeEEEeccchHHHHHHHHHH-HHHhCCCCEEEEEecCCHHHHHHHHHhCCC
Confidence            4678999999999999999999 999889999999999999999999998853

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=99.76  E-value=1.6e-17  Score=128.38  Aligned_cols=104  Identities=16%  Similarity=0.194  Sum_probs=83.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      .+|.+|+|+|+|||||||+|+.+++..++     ..++.|.+..                      .    ..++..+.+
T Consensus       367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~-----~~vn~D~lg~----------------------~----~~~~~~a~~  415 (526)
T TIGR01663       367 APCEMVIAVGFPGAGKSHFCKKFFQPAGY-----KHVNADTLGS----------------------T----QNCLTACER  415 (526)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHcCC-----eEECcHHHHH----------------------H----HHHHHHHHH
Confidence            46789999999999999999999987543     3445554310                      0    122333444


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .|. .|..||+|++|.+++.|..|.+ +++++|+++.++++.+|.+++.+||..|..
T Consensus       416 ~L~-~G~sVVIDaTn~~~~~R~~~i~-lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~  470 (526)
T TIGR01663       416 ALD-QGKRCAIDNTNPDAASRAKFLQ-CARAAGIPCRCFLFNAPLAQAKHNIAFREL  470 (526)
T ss_pred             HHh-CCCcEEEECCCCCHHHHHHHHH-HHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence            444 4789999999999999999999 999999999999999999999999999865

Note that the EC number for the kinase function is: 2.7.1.78

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.75  E-value=2e-17  Score=112.64  Aligned_cols=120  Identities=20%  Similarity=0.187  Sum_probs=84.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHH---HHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLS---AREAQEDATK   83 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~   83 (143)
                      .+|+++|+|||||||+|+.|++.|....+++..+..| |......    .+.+..   .....++..   +..++..++ 
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd-y~~~i~~----DEslpi---~ke~yres~~ks~~rlldSal-   72 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD-YLRGILW----DESLPI---LKEVYRESFLKSVERLLDSAL-   72 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh-hhhheec----ccccch---HHHHHHHHHHHHHHHHHHHHh-
Confidence            4899999999999999999999998877766666554 2222110    011111   001111111   112233222 


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                        .  ...||+|++|...+.|.++.. .+++......+|++.||.+.|++||..|..
T Consensus        73 --k--n~~VIvDdtNYyksmRrqL~c-eak~~~tt~ciIyl~~plDtc~rrN~erge  124 (261)
T COG4088          73 --K--NYLVIVDDTNYYKSMRRQLAC-EAKERKTTWCIIYLRTPLDTCLRRNRERGE  124 (261)
T ss_pred             --c--ceEEEEecccHHHHHHHHHHH-HHHhcCCceEEEEEccCHHHHHHhhccCCC
Confidence              2  568999999999999999999 999999999999999999999999976643

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.75  E-value=4.7e-17  Score=107.77  Aligned_cols=116  Identities=21%  Similarity=0.191  Sum_probs=83.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN   87 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (143)
                      +|+|+|+|||||||+|+.|++.+...+.+...++.|.++.....   ... +.......      .. ..+......+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~---~~~-~~~~~~~~------~~-~~~~~~a~~l~~   69 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK---DLG-FSREDREE------NI-RRIAEVAKLLAD   69 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh---ccC-CCcchHHH------HH-HHHHHHHHHHHh
Confidence            58999999999999999999998766766667777777764322   111 22211111      11 112223334444


Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      .|..+|+|+++.....|..+.+ +++  +.++.++++.||.+++.+|+.+
T Consensus        70 ~G~~VIid~~~~~~~~R~~~~~-l~~--~~~~~~i~l~~~~e~~~~R~~~  116 (149)
T cd02027          70 AGLIVIAAFISPYREDREAARK-IIG--GGDFLEVFVDTPLEVCEQRDPK  116 (149)
T ss_pred             CCCEEEEccCCCCHHHHHHHHH-hcC--CCCEEEEEEeCCHHHHHHhCch
Confidence            6889999999999999999988 876  6888899999999999999876

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.73  E-value=2.1e-16  Score=107.24  Aligned_cols=126  Identities=18%  Similarity=0.149  Sum_probs=76.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC----CCCccccC-chhhhhHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN----SHDIFRVD-NTEGYNIRQLSAREAQED   80 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (143)
                      ..+|+|+|+|||||||+|+.|++.++...+   .++.|+++........    +.+ ++.+ ........+.. ......
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~---~~~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-y~~~~~   76 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLAEPWL---HFGVDSFIEALPLKCQDAEGGIE-FDGDGGVSPGPEFRLL-EGAWYE   76 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhCCCcc---ccCccHHHHhcChhhcccccccc-cCccCCcccchHHHHH-HHHHHH
Confidence            358999999999999999999998754332   2355555544321100    011 1110 00000111111 122223


Q ss_pred             HHHHHhcCCeEEEEeCCch-hHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          81 ATKWLKNDGEVAIIDGTTA-TMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~-~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+..+...|..||+|.++. ..+.|+.+.. +   .+.++.+|++.||.+++.+|+.+|..
T Consensus        77 ~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~-~---~~~~~~~v~l~~~~~~l~~R~~~R~~  133 (175)
T cd00227          77 AVAAMARAGANVIADDVFLGRAALQDCWRS-F---VGLDVLWVGVRCPGEVAEGRETARGD  133 (175)
T ss_pred             HHHHHHhCCCcEEEeeeccCCHHHHHHHHH-h---cCCCEEEEEEECCHHHHHHHHHhcCC
Confidence            3333444688999999887 5666666655 4   25778899999999999999998863

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.72  E-value=1.3e-16  Score=105.52  Aligned_cols=118  Identities=14%  Similarity=0.122  Sum_probs=76.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh--hcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE--LYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      +|+|+|+|||||||+|+.|++.++...     ++.|.++.....  ...+.+ +...  +...+..    .....+...+
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~-----i~~D~~~~~~~~~~~~~~~~-~~~~--~~~~~~~----~~~~~~~~~l   68 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPF-----IDGDDLHPPANIAKMAAGIP-LNDE--DRWPWLQ----ALTDALLAKL   68 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEE-----EeCcccccHHHHHHHHcCCC-CCcc--chhhHHH----HHHHHHHHHH
Confidence            589999999999999999999876544     445554432110  001112 1111  1111111    1111122222


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ...+..+|+|+++...+.|+.+.+ ++  ++..+.+|++.||.+++.+|+..|..
T Consensus        69 ~~~~~~vVid~~~~~~~~r~~~~~-~~--~~~~~~~v~l~~~~~~~~~R~~~R~~  120 (150)
T cd02021          69 ASAGEGVVVACSALKRIYRDILRG-GA--ANPRVRFVHLDGPREVLAERLAARKG  120 (150)
T ss_pred             HhCCCCEEEEeccccHHHHHHHHh-cC--CCCCEEEEEEECCHHHHHHHHHhccc
Confidence            234678999999999999988888 77  57888899999999999999998854

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.70  E-value=7.5e-16  Score=103.94  Aligned_cols=127  Identities=18%  Similarity=0.146  Sum_probs=78.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-CCCcccc--CchhhhhHHHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-SHDIFRV--DNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      .+|+|+|+|.|||||+|+.|.+.+..+.   -.++.|.+...+..... ....+.+  +..+....... ....+...+.
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~---~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ia   77 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPW---LHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRR-LYAAMHAAIA   77 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-E---EEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHH-HHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCe---EEEecChHHhhcCcccccCCccccccccCCchhHHHHH-HHHHHHHHHH
Confidence            5899999999999999999999986443   35688888775433211 1112221  11111111111 1234455555


Q ss_pred             HHhcCCeEEEEeCCchhHHH-HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATMEK-RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~-r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+.+.|..||+|.....+.. .+.|.+ ++.  ++++++|.+.||.+++.+|...|..
T Consensus        78 a~a~aG~~VIvD~v~~~~~~l~d~l~~-~L~--~~~vl~VgV~Cpleil~~RE~~RgD  132 (174)
T PF07931_consen   78 AMARAGNNVIVDDVFLGPRWLQDCLRR-LLA--GLPVLFVGVRCPLEILERRERARGD  132 (174)
T ss_dssp             HHHHTT-EEEEEE--TTTHHHHHHHHH-HHT--TS-EEEEEEE--HHHHHHHHHHHTS
T ss_pred             HHHhCCCCEEEecCccCcHHHHHHHHH-HhC--CCceEEEEEECCHHHHHHHHHhcCC
Confidence            55667999999988777653 566656 664  7999999999999999999999875

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>COG0645 Predicted kinase [General function prediction only]

Probab=99.70  E-value=1.3e-16  Score=105.66  Aligned_cols=121  Identities=18%  Similarity=0.265  Sum_probs=89.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh----hcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE----LYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .++++.|+|||||||+|+.|++.++...+     ..|.++...++    .......|++...+..+       ..+....
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~l-----rsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy-------~~l~~~A   69 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRL-----RSDVIRKRLFGVPEETRGPAGLYSPAATAAVY-------DELLGRA   69 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEE-----ehHHHHHHhcCCcccccCCCCCCcHHHHHHHH-------HHHHHHH
Confidence            68999999999999999999999887655     55555665543    01122333332222221       2233333


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ..+-..|..||+|+++..+..|+.+.. +++..+.++.+|++.+|.+.+..|-..|+-
T Consensus        70 ~l~l~~G~~VVlDa~~~r~~~R~~~~~-~A~~~gv~~~li~~~ap~~v~~~rl~aR~~  126 (170)
T COG0645          70 ELLLSSGHSVVLDATFDRPQERALARA-LARDVGVAFVLIRLEAPEEVLRGRLAARKG  126 (170)
T ss_pred             HHHHhCCCcEEEecccCCHHHHHHHHH-HHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence            334345889999999999999999999 999999999999999999999999988864

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.69  E-value=4.8e-16  Score=114.62  Aligned_cols=127  Identities=20%  Similarity=0.136  Sum_probs=86.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhhh-cCCCCccccCchhhhhHHHHHHHH---------
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLEL-YNSHDIFRVDNTEGYNIRQLSARE---------   76 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------   76 (143)
                      +++|+|+|||||||+++.|+..+. ..|+++.+++.|++....... ..+.     ...+.+...+....+         
T Consensus         1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~-----~~~~~~k~~R~~i~~~le~~v~a~   75 (340)
T TIGR03575         1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSR-----EIPSQWKQFRQELLKYLEHFLVAV   75 (340)
T ss_pred             CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCC-----CcHHHHHHHHHHHHHHHHHHHHHh
Confidence            478999999999999999999986 578889999998876321110 0000     000000000000000         


Q ss_pred             ---------------------------------------HHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC
Q psy2713          77 ---------------------------------------AQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF  117 (143)
Q Consensus        77 ---------------------------------------~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~  117 (143)
                                                             ....+.....+.+..+|+|++|..+..|..+.. +++.++.
T Consensus        76 ~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~-LAr~~~~  154 (340)
T TIGR03575        76 INGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQ-LARKYSL  154 (340)
T ss_pred             cCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHH-HHHHhCC
Confidence                                                   001111111133457999999999999999999 9999999


Q ss_pred             EEEEEEeecCcHHHHHHhhhhhc
Q psy2713         118 KVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus       118 ~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+.+|++.||.+++++||.+|..
T Consensus       155 ~~~~V~ld~ple~~l~RN~~R~~  177 (340)
T TIGR03575       155 GFCQLFLDCPVESCLLRNKQRPV  177 (340)
T ss_pred             CEEEEEEeCCHHHHHHHHhcCCC
Confidence            99999999999999999999853

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.69  E-value=6.7e-16  Score=105.48  Aligned_cols=119  Identities=16%  Similarity=0.179  Sum_probs=84.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      +++.+|+|+|+|||||||+|+.|...+...+.....++.|.++.....   +.. |...  +...    .. ..+..+..
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~---~~~-~~~~--~~~~----~~-~~~~~~~~   84 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNK---DLG-FSEE--DRKE----NI-RRIGEVAK   84 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhcc---ccC-CCHH--HHHH----HH-HHHHHHHH
Confidence            467899999999999999999999998766666667777777654322   111 2221  1111    11 11233334


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      .+...|.+||+|+++.....|+.+.. ++...  ++.++++.||.+++.+|+.
T Consensus        85 ~~~~~G~~VI~d~~~~~~~~r~~~~~-~~~~~--~~~~v~l~~~~e~~~~R~~  134 (184)
T TIGR00455        85 LFVRNGIIVITSFISPYRADRQMVRE-LIEKG--EFIEVFVDCPLEVCEQRDP  134 (184)
T ss_pred             HHHcCCCEEEEecCCCCHHHHHHHHH-hCcCC--CeEEEEEeCCHHHHHHhCc
Confidence            44456899999999999999998888 77653  6677889999999999964

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.69  E-value=7.7e-16  Score=106.46  Aligned_cols=132  Identities=21%  Similarity=0.298  Sum_probs=82.2

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      ...|.++++.|.|||||||++..+...+.  .-+...++.|.++.......   +.......+........+....+.+.
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~   86 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYD---ELLKADPDEASELTQKEASRLAEKLI   86 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHH---HHHHHHCCCTHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchh---hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            45789999999999999999999998875  44567788888876531100   00000011111122222334455566


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +.+...+..+|+|+++..++....+.+ .+++.||.+.++.+.++.+..+.|..+|-.
T Consensus        87 ~~a~~~~~nii~E~tl~~~~~~~~~~~-~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~  143 (199)
T PF06414_consen   87 EYAIENRYNIIFEGTLSNPSKLRKLIR-EAKAAGYKVELYYVAVPPELSIERVRQRYE  143 (199)
T ss_dssp             HHHHHCT--EEEE--TTSSHHHHHHHH-HHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEecCCCChhHHHHHHH-HHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence            666556889999999998888887888 999999999999999999999999988854

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK14527 adenylate kinase; Provisional

Probab=99.65  E-value=1.4e-15  Score=104.54  Aligned_cols=127  Identities=20%  Similarity=0.266  Sum_probs=81.0

Q ss_pred             CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHH
Q psy2713           1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAR   75 (143)
Q Consensus         1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   75 (143)
                      |...++.+|++.|+|||||||+|+.|+++++..++++     +++.+........     .+++..    +......+  
T Consensus         1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~-----gd~~r~~~~~~~~~~~~~~~~~~~----g~~~p~~~--   69 (191)
T PRK14527          1 MTQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST-----GDILRDHVARGTELGQRAKPIMEA----GDLVPDEL--   69 (191)
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc-----cHHHHHHHhcCcHHHHHHHHHHHc----CCCCcHHH--
Confidence            3456788999999999999999999999998877754     3333222111000     000000    00001111  


Q ss_pred             HHHHHHHHHHh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713          76 EAQEDATKWLK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        76 ~~~~~~~~~l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~  140 (143)
                       ....+.+.+. ..+..+|+|+++.+..+++.+.. +++..+.++ .++++.||.+++.+|-.+|..
T Consensus        70 -~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~-~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~  134 (191)
T PRK14527         70 -ILALIRDELAGMEPVRVIFDGFPRTLAQAEALDR-LLEELGARLLAVVLLEVPDEELIRRIVERAR  134 (191)
T ss_pred             -HHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence             1111222332 12346999999888888888888 888777666 468889999999999998864

>KOG3354|consensus

Probab=99.63  E-value=1.1e-14  Score=95.04  Aligned_cols=122  Identities=16%  Similarity=0.159  Sum_probs=89.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      +.+|++.|++||||||+++.|.+.|++.+++.|-+....-++.+-.   +++.-+   ++.+-|...+    -..+...+
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~---GipLnD---~DR~pWL~~i----~~~~~~~l   81 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQ---GIPLND---DDRWPWLKKI----AVELRKAL   81 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhc---CCCCCc---ccccHHHHHH----HHHHHHHh
Confidence            4699999999999999999999999999999988877655555432   445322   2333333332    23333333


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhh------cCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARK------MGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      . .+..+|+.|+...+.+|+-+.. -++.      .+..+.||.+..+.+++.+|-..|.
T Consensus        82 ~-~~q~vVlACSaLKk~YRdILr~-sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~  139 (191)
T KOG3354|consen   82 A-SGQGVVLACSALKKKYRDILRH-SLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK  139 (191)
T ss_pred             h-cCCeEEEEhHHHHHHHHHHHHh-hcccCCccCCccceEEEeeeeccHHHHHHHHhhcc
Confidence            3 4778999999999999988877 5542      2467888888899999999998886

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.63  E-value=1.4e-14  Score=98.21  Aligned_cols=116  Identities=18%  Similarity=0.175  Sum_probs=77.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      ++..+|+|+|+|||||||+|+.|+..+...+.+..+++.|.++.....   +.. +..+..+..  .    .. +..+..
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~---~~~-~~~~~r~~~--~----~~-~~~~a~   70 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSK---GLG-FSKEDRDTN--I----RR-IGFVAN   70 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhc---CCC-CChhhHHHH--H----HH-HHHHHH
Confidence            566799999999999999999999998776766777777776654321   111 222111111  1    11 122223


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                      .+...|.++++|+++...+.++.+.. ..    ..+.+|++.||.+++.+|+
T Consensus        71 ~~~~~g~~vi~~~~~~~~~~~~~l~~-~~----~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         71 LLTRHGVIVLVSAISPYRETREEVRA-NI----GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             HHHhCCCEEEEecCCCCHHHHHHHHh-hc----CCeEEEEEcCCHHHHHHhC
Confidence            33345778999998777677766665 43    3466788899999999997

>PRK14532 adenylate kinase; Provisional

Probab=99.62  E-value=2.4e-15  Score=102.97  Aligned_cols=121  Identities=21%  Similarity=0.238  Sum_probs=77.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .|+|.|+|||||||+|+.|++.++..++     +.|++.+.......     ...+++.    +..+........+....
T Consensus         2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i-----s~~d~lr~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~   72 (188)
T PRK14532          2 NLILFGPPAAGKGTQAKRLVEERGMVQL-----STGDMLRAAIASGSELGQRVKGIMDR----GELVSDEIVIALIEERL   72 (188)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCeEE-----eCcHHHHHHHHcCCHHHHHHHHHHHC----CCccCHHHHHHHHHHHH
Confidence            4899999999999999999999886655     45444343221000     0011110    00011111122222222


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .. ...+..+|+|+++.+..+++.+.+ +++..+... .++++.+|++++.+|...|.
T Consensus        73 ~~-~~~~~g~vldg~pr~~~q~~~~~~-~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~  128 (188)
T PRK14532         73 PE-AEAAGGAIFDGFPRTVAQAEALDK-MLASRGQKIDVVIRLKVDDEALIERIVKRF  128 (188)
T ss_pred             hC-cCccCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence            11 123567999999999999999988 887777654 67889999999999988774

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.62  E-value=1.1e-15  Score=104.06  Aligned_cols=122  Identities=14%  Similarity=0.154  Sum_probs=73.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      +|+++|+|||||||+|+.|+++++..++     +.+++.+.....  +.+.   ....-..+...........+.   +.
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~i-----s~~d~lr~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~---~~   70 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHL-----SAGDLLRAEIKS--GSENGELIESMIKNGKIVPSEVTVKLLK---NA   70 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEE-----ECChHHHHHHhc--CChHHHHHHHHHHCCCcCCHHHHHHHHH---HH
Confidence            5899999999999999999999876554     544333322111  0000   000000000111111112222   22


Q ss_pred             Hh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 LK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +. ..+..+|+|+++.+.++++.|.+ ++.....+-.++++.||.+++++|..+|..
T Consensus        71 ~~~~~~~~~vlDg~p~~~~q~~~~~~-~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~  126 (183)
T TIGR01359        71 IQADGSKKFLIDGFPRNEENLEAWEK-LMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ  126 (183)
T ss_pred             HhccCCCcEEEeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence            21 22567999999999999998888 765332233478889999999999888754

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14531 adenylate kinase; Provisional

Probab=99.61  E-value=2.9e-15  Score=102.34  Aligned_cols=124  Identities=15%  Similarity=0.154  Sum_probs=75.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      +..|+++|+|||||||+|+.|++.++..++++     ++..+......  .+.   ....-..+..+...+....+.   
T Consensus         2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~-----gd~lr~~~~~~--~~~~~~~~~~~~~G~~v~d~l~~~~~~---   71 (183)
T PRK14531          2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLST-----GDLLRSEVAAG--SALGQEAEAVMNRGELVSDALVLAIVE---   71 (183)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCCeEec-----ccHHHHHHhcC--CHHHHHHHHHHHcCCCCCHHHHHHHHH---
Confidence            45699999999999999999999998766544     33322211100  000   000000000111111111111   


Q ss_pred             HHHh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +.+. ..+..+|+|+++.+..+.+.|.+ .+...+.++ .++++.||.+++.+|...|..
T Consensus        72 ~~l~~~~~~g~ilDGfpr~~~q~~~~~~-~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r  130 (183)
T PRK14531         72 SQLKALNSGGWLLDGFPRTVAQAEALEP-LLEELKQPIEAVVLLELDDAVLIERLLARGR  130 (183)
T ss_pred             HHHhhccCCcEEEeCCCCCHHHHHHHHH-HHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence            2221 12456899999999999998888 888776554 478889999999999887743

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.61  E-value=2.1e-14  Score=99.18  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=81.6

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      ++++.+|+|+|+|||||||+++.|+..+...+.....+..|.++.....   ... +.......      . ...+..+.
T Consensus        21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~-~~~~~~~~------~-~~~l~~~a   89 (198)
T PRK03846         21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLG-FSDADRKE------N-IRRVGEVA   89 (198)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCC-cCcccHHH------H-HHHHHHHH
Confidence            4678999999999999999999999988666666667766766644221   111 22211111      1 11122233


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                      ..+...|.++|.++.+..++.|+.+.+ +++..  .+++|++.||.+++.+|+
T Consensus        90 ~~~~~~G~~VI~~~~~~~~~~R~~~r~-~l~~~--~~i~V~L~~~~e~~~~R~  139 (198)
T PRK03846         90 KLMVDAGLVVLTAFISPHRAERQMVRE-RLGEG--EFIEVFVDTPLAICEARD  139 (198)
T ss_pred             HHHhhCCCEEEEEeCCCCHHHHHHHHH-HcccC--CEEEEEEcCCHHHHHhcC
Confidence            344445778888888888899999999 88764  455688899999999994

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.61  E-value=1e-14  Score=97.70  Aligned_cols=113  Identities=16%  Similarity=0.189  Sum_probs=68.4

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh-hh-hcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH-LE-LYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      |+++|+|||||||+|+.|++.++...     ++.|++.... .. ...+.. +..  .....    +.......+...+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~-----v~~D~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~~~~~~~l~   68 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKF-----IEGDDLHPAANIEKMSAGIP-LND--DDRWP----WLQNLNDASTAAAA   68 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeE-----EeCccccChHHHHHHHcCCC-CCh--hhHHH----HHHHHHHHHHHHHh
Confidence            57899999999999999999986444     4445442110 00 000111 111  11111    11222333333444


Q ss_pred             cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      . +..+|+|+++..+..|+.+.     .++.++.++++.+|.+++.+|..+|.
T Consensus        69 ~-~~~~Vi~~t~~~~~~r~~~~-----~~~~~~~~i~l~~~~e~~~~R~~~R~  115 (163)
T TIGR01313        69 K-NKVGIITCSALKRHYRDILR-----EAEPNLHFIYLSGDKDVILERMKARK  115 (163)
T ss_pred             c-CCCEEEEecccHHHHHHHHH-----hcCCCEEEEEEeCCHHHHHHHHHhcc
Confidence            4 34568888887666655443     45777888899999999999999885

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.61  E-value=3.3e-14  Score=96.44  Aligned_cols=117  Identities=17%  Similarity=0.131  Sum_probs=75.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      .++.+|+|+|+|||||||+|+.|++.+...+.....+..|.++... ..    ..+......      .. ......+.+
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~-~~----~~~~~~~~~------~~-~~~~~~l~~   72 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL-GH----YGYDKQSRI------EM-ALKRAKLAK   72 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc-CC----CCCCHHHHH------HH-HHHHHHHHH
Confidence            4578999999999999999999999997666666677777765532 11    112111110      00 111223333


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      .+...|..||+|+.+...+.++.... ...    +.+++++.||.+++.+|..+
T Consensus        73 ~l~~~g~~VI~~~~~~~~~~~~~~~~-~~~----~~~~v~l~~~~e~~~~R~~~  121 (176)
T PRK05541         73 FLADQGMIVIVTTISMFDEIYAYNRK-HLP----NYFEVYLKCDMEELIRRDQK  121 (176)
T ss_pred             HHHhCCCEEEEEeCCcHHHHHHHHHh-hcC----CeEEEEEeCCHHHHHHhchh
Confidence            34345789999998876555555444 332    24578889999999999764

>PRK14529 adenylate kinase; Provisional

Probab=99.58  E-value=1.2e-14  Score=101.76  Aligned_cols=124  Identities=14%  Similarity=0.200  Sum_probs=78.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      -|+|.|+|||||||+|+.|++.++..++++..+     .+.....  +.+.   +......+..+...+....   +.+.
T Consensus         2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl-----lr~~i~~--~t~lg~~i~~~i~~G~lvpdei~~~l---v~~~   71 (223)
T PRK14529          2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAI-----FREHIGG--GTELGKKAKEYIDRGDLVPDDITIPM---ILET   71 (223)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCCCcccchh-----hhhhccC--CChHHHHHHHHHhccCcchHHHHHHH---HHHH
Confidence            388899999999999999999998877754333     2221110  0000   0000011111222222222   2233


Q ss_pred             Hh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhccC
Q psy2713          85 LK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSMCS  142 (143)
Q Consensus        85 l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~~~  142 (143)
                      +. .....+|+|+++.+..+.+.|.+ ++...+..+ .+|++.||++++.+|-..|+.+.
T Consensus        72 l~~~~~~g~iLDGfPRt~~Qa~~l~~-~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~  130 (223)
T PRK14529         72 LKQDGKNGWLLDGFPRNKVQAEKLWE-ALQKEGMKLDYVIEILLPREVAKNRIMGRRLCK  130 (223)
T ss_pred             HhccCCCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHhhCCcccc
Confidence            31 12466999999999999999888 776655444 57888999999999999997654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.58  E-value=3.9e-14  Score=112.76  Aligned_cols=119  Identities=14%  Similarity=0.153  Sum_probs=85.7

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .+++.+|+++|+|||||||+|+.|++++...+.....++.|.++.....   +.. |..+  +.    ..+... +..+.
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~---~~~-~~~~--~r----~~~~~~-l~~~a  525 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNR---DLG-FSDA--DR----VENIRR-VAEVA  525 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCC---CCC-CCHH--HH----HHHHHH-HHHHH
Confidence            4568999999999999999999999999776777788888888765431   111 2221  11    111122 22233


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                      ..+...|..+|+|+++..+..|+.+.+ ++...  .+.++++.+|.+++.+|+
T Consensus       526 ~~~~~~G~~Vivda~~~~~~~R~~~r~-l~~~~--~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        526 RLMADAGLIVLVSFISPFREERELARA-LHGEG--EFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             HHHHhCCCEEEEECCCCCHHHHHHHHH-hcccC--CeEEEEECCCHHHHHhhC
Confidence            333455889999999999999998888 77653  567788999999999997

>PLN02674 adenylate kinase

Probab=99.58  E-value=2e-14  Score=101.77  Aligned_cols=129  Identities=15%  Similarity=0.150  Sum_probs=80.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc-cccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI-FRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      +..|++.|+|||||||+|+.|++.++..++     +.++..+........... .......+..+...+....+.+.+..
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi-----s~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~  105 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL-----ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK  105 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEE-----chhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhC
Confidence            467899999999999999999999987665     555544443221100000 00000111112222222222221111


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhcc
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                       ......+|+|+++.+..+.+.+.+ ++...+..+ .+|++.+|++++.+|...|..+
T Consensus       106 -~~~~~g~ilDGfPRt~~Qa~~l~~-~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~  161 (244)
T PLN02674        106 -PSCQKGFILDGFPRTVVQAQKLDE-MLAKQGAKIDKVLNFAIDDAILEERITGRWIH  161 (244)
T ss_pred             -cCcCCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHhccccc
Confidence             122457999999999999998888 776666444 5788899999999999988644

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.57  E-value=6.3e-14  Score=109.98  Aligned_cols=119  Identities=15%  Similarity=0.154  Sum_probs=82.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc-CCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      .+.+|+|+|+|||||||+|+.|++.++. .+.+...+..|.++..+.    +...|+....+  ...    .. +.....
T Consensus       391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~----ge~~f~~~er~--~~~----~~-l~~~a~  459 (568)
T PRK05537        391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS----SELGFSKEDRD--LNI----LR-IGFVAS  459 (568)
T ss_pred             CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc----CCCCCCHHHHH--HHH----HH-HHHHHH
Confidence            4679999999999999999999999986 555566777776655432    12234322111  111    11 211222


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      .+...|.++|+|+++...+.|+.+.+ ++++++ .+++|++.+|.+++.+|..
T Consensus       460 ~v~~~Gg~vI~~~~~p~~~~R~~nr~-llk~~g-~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        460 EITKNGGIAICAPIAPYRATRREVRE-MIEAYG-GFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             HHHhCCCEEEEEeCCchHHHHHHHHH-HHhhcC-CEEEEEEcCCHHHHHHhcc
Confidence            23234779999999999999999999 988765 4567888999999999963

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.53  E-value=4.5e-14  Score=98.73  Aligned_cols=120  Identities=16%  Similarity=0.223  Sum_probs=74.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .|++.|+|||||||+|+.|++.++..++++     ++..+........     .++++..    ..+...+.   ...+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~-----~dl~r~~~~~~~~~~~~~~~~~~~g----~~~p~~~~---~~~i~   69 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST-----GDMLRAAVKAGTELGKEAKSYMDAG----ELVPDEIV---IGLVK   69 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEC-----CccHHHHHhccchHHHHHHHHHHcC----CcCCHHHH---HHHHH
Confidence            489999999999999999999998766644     3332221111000     0000000    00011111   11111


Q ss_pred             HHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +.+.  .....+|+|+++.+..+.+.+.+ .+...+..+ .+|++.||++++.+|-..|..
T Consensus        70 ~~l~~~~~~~g~VlDGfPr~~~qa~~l~~-~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~  129 (215)
T PRK00279         70 ERLAQPDCKNGFLLDGFPRTIPQAEALDE-MLKELGIKLDAVIEIDVPDEELVERLSGRRI  129 (215)
T ss_pred             HHHhccCccCCEEEecCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHhCCcc
Confidence            2221  12347999999999888888877 777666554 678899999999999998864

>PLN02200 adenylate kinase family protein

Probab=99.52  E-value=4.3e-14  Score=99.98  Aligned_cols=123  Identities=16%  Similarity=0.213  Sum_probs=72.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      .|.+|+++|+|||||||+|+.|++.++..++     +.+++.+......  .+...   .....+...........+...
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~hi-----s~gdllR~~i~~~--s~~~~~i~~~~~~G~~vp~e~~~~~l~~~  114 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHL-----SAGDLLRREIASN--SEHGAMILNTIKEGKIVPSEVTVKLIQKE  114 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCeEE-----EccHHHHHHHhcc--ChhHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence            4689999999999999999999999876544     5544433322110  00000   000000000111111112211


Q ss_pred             HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +.  ...+..+|+|+.+.+.+++..+.+ .+..  .+-.++.+.||++++.+|...|.
T Consensus       115 l~--~~~~~~~ILDG~Prt~~q~~~l~~-~~~~--~pd~vi~Ld~~~e~~~~Rl~~R~  167 (234)
T PLN02200        115 ME--SSDNNKFLIDGFPRTEENRIAFER-IIGA--EPNVVLFFDCPEEEMVKRVLNRN  167 (234)
T ss_pred             Hh--cCCCCeEEecCCcccHHHHHHHHH-Hhcc--CCCEEEEEECCHHHHHHHHHcCc
Confidence            11  112456999999998888877776 5532  23356788999999999988774

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=2.6e-13  Score=88.02  Aligned_cols=112  Identities=14%  Similarity=0.092  Sum_probs=77.9

Q ss_pred             EccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhcCCeE
Q psy2713          12 VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEV   91 (143)
Q Consensus        12 ~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (143)
                      .|.+||||||++..|++++++.+++.|-+....-...+..   +.++-+.   +.+-|.    ...-+.+.... ..+..
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~---GiPL~Dd---DR~pWL----~~l~~~~~~~~-~~~~~   69 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSA---GIPLNDD---DRWPWL----EALGDAAASLA-QKNKH   69 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhC---CCCCCcc---hhhHHH----HHHHHHHHHhh-cCCCc
Confidence            4899999999999999999999998888866544444322   4553322   222222    22222222322 23557


Q ss_pred             EEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          92 AIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        92 vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +|+-|+.+.+++|+.+.. -    .-.+.||++.-+.+.+++|..+|+
T Consensus        70 ~vi~CSALKr~YRD~LR~-~----~~~~~Fv~L~g~~~~i~~Rm~~R~  112 (161)
T COG3265          70 VVIACSALKRSYRDLLRE-A----NPGLRFVYLDGDFDLILERMKARK  112 (161)
T ss_pred             eEEecHHHHHHHHHHHhc-c----CCCeEEEEecCCHHHHHHHHHhcc
Confidence            999999999998888876 2    224778888899999999998885

>TIGR01351 adk adenylate kinases

Probab=99.51  E-value=1.1e-13  Score=96.48  Aligned_cols=123  Identities=16%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-ccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-IFRVDNTEGYNIRQLSAREAQEDATKWLKN   87 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (143)
                      |++.|+|||||||+|+.|++.++..++     +.+++.+.......... ........+..+...+....+.+.+.....
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~i-----s~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~   76 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHI-----STGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD   76 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCee-----ehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc
Confidence            789999999999999999999876655     55444333221100000 000000000011111111112211111111


Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+..+|+|+++.+..+.+.+.+ .+..  ....+|++.||++.+.+|-..|.
T Consensus        77 ~~~~~ilDGfPrt~~Qa~~l~~-~~~~--~~~~vi~L~~~~~~~~~Rl~~R~  125 (210)
T TIGR01351        77 NENGFILDGFPRTLSQAEALDA-LLKE--KIDAVIELDVPDEELVERLSGRR  125 (210)
T ss_pred             cCCcEEEeCCCCCHHHHHHHHH-Hhcc--CCCEEEEEECCHHHHHHHHHCCC
Confidence            2467999999998888877776 5431  23467888999999999999886

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.50  E-value=6.5e-14  Score=96.09  Aligned_cols=119  Identities=18%  Similarity=0.235  Sum_probs=72.9

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      |+++|+|||||||+|+.|++.++..+     ++.|++.+.......  +   .+++..    +......+....+   ..
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~-----i~~~~l~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~l~---~~   69 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPH-----ISTGDLLREEIASGTELGKKAKEYIDS----GKLVPDEIVIKLL---KE   69 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeE-----EECcHHHHHHHhcCChHHHHHHHHHHc----CCccCHHHHHHHH---HH
Confidence            79999999999999999999987544     455544333211100  0   000000    0000011111111   12


Q ss_pred             HHhc--CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKN--DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~--~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+..  .+..+|+|+.+.+..+.+.+.+ .....+.+..+|++.||.+++.+|..+|..
T Consensus        70 ~l~~~~~~~~~vldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~  127 (194)
T cd01428          70 RLKKPDCKKGFILDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRI  127 (194)
T ss_pred             HHhcccccCCEEEeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence            2221  2456899999888888888877 665444666788899999999999998864

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>KOG0635|consensus

Probab=99.50  E-value=2e-13  Score=89.01  Aligned_cols=121  Identities=17%  Similarity=0.171  Sum_probs=88.5

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .++.++|+++|++||||||+|-.|.+.|...+.-+-.+..|++|.....   +.. |..+ +...-      .+.+.++.
T Consensus        28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~---DL~-F~a~-dR~EN------IRRigeVa   96 (207)
T KOG0635|consen   28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK---DLG-FKAE-DRNEN------IRRIGEVA   96 (207)
T ss_pred             cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc---ccC-cchh-hhhhh------HHHHHHHH
Confidence            4567899999999999999999999999988988888888888765322   111 3321 11111      23366677


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      +.+.+.|.+.|......++..|+.-.+ +..+.  +++-|.+.||.+.|..|+=+
T Consensus        97 KLFADag~iciaSlISPYR~dRdacRe-l~~~~--~FiEvfmdvpl~vcE~RDPK  148 (207)
T KOG0635|consen   97 KLFADAGVICIASLISPYRKDRDACRE-LLPEG--DFIEVFMDVPLEVCEARDPK  148 (207)
T ss_pred             HHHhccceeeeehhcCchhccHHHHHH-hccCC--CeEEEEecCcHHHhhccCch
Confidence            777777877777777788888888888 77653  56666778999999888643

>KOG3079|consensus

Probab=99.50  E-value=2.2e-13  Score=91.27  Aligned_cols=130  Identities=13%  Similarity=0.112  Sum_probs=83.2

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQ   78 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   78 (143)
                      +..++.+|++.|.|||||.|++..+++.+++.++     +.++..+...... +.++-.   .....+..+...+....+
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHl-----SaGdLLR~E~~~~-gse~g~~I~~~i~~G~iVP~ei~~~LL   77 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHL-----SAGDLLRAEIASA-GSERGALIKEIIKNGDLVPVEITLSLL   77 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceee-----cHHHHHHHHHccc-cChHHHHHHHHHHcCCcCcHHHHHHHH
Confidence            4567889999999999999999999999998776     6666655532210 111100   000011111222223333


Q ss_pred             HHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          79 EDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        79 ~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      ..++....+ ...+++|+.+....+...|.+ ....  -+-+++.+.|+.++|++|-++|.+-
T Consensus        78 ~~am~~~~~-~~~fLIDGyPR~~~q~~~fe~-~i~~--~~~fvl~fdc~ee~~l~Rll~R~q~  136 (195)
T KOG3079|consen   78 EEAMRSSGD-SNGFLIDGYPRNVDQLVEFER-KIQG--DPDFVLFFDCPEETMLKRLLHRGQS  136 (195)
T ss_pred             HHHHHhcCC-CCeEEecCCCCChHHHHHHHH-HhcC--CCCEEEEEeCCHHHHHHHHHhhccc
Confidence            333333211 123999999999999998888 5542  2334677789999999999999765

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=99.49  E-value=1.5e-13  Score=93.35  Aligned_cols=123  Identities=18%  Similarity=0.259  Sum_probs=75.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      -|++.|+|||||||+|+.|++.++..+++++.+     .+......  .+...   ........+...+...++...+..
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~-----~r~~~~~~--t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~   74 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDI-----LRAAIAER--TELGEEIKKYIDKGELVPDEIVNGLVKERLDE   74 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHH-----hHhhhccC--ChHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence            588999999999999999999988887754433     22221100  00000   000000011222222333332222


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhh
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..... .+|+|+.+.+..+-+.+.+ ++.++|.+. ..+++.++++.++.|-..|.
T Consensus        75 ~d~~~-~~I~dg~PR~~~qa~~l~r-~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~  128 (178)
T COG0563          75 ADCKA-GFILDGFPRTLCQARALKR-LLKELGVRLDMVIELDVPEELLLERLLGRR  128 (178)
T ss_pred             hcccC-eEEEeCCCCcHHHHHHHHH-HHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence            22122 7999999999988888888 888877444 57788899988888887763

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=99.49  E-value=2.1e-12  Score=89.08  Aligned_cols=124  Identities=14%  Similarity=0.104  Sum_probs=69.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC------------ccccCchhhhhHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD------------IFRVDNTEGYNIRQ   71 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~   71 (143)
                      |.+.+|+++|+|||||||+|+.|++.++..    .++..|.++..+-. ....+            .+..+..+. .+..
T Consensus         1 ~~~~~i~i~G~~G~GKst~a~~l~~~~~~~----~~~~~D~~r~~~r~-~~~~~p~l~~s~~~a~~~~~~~~~~~-~~~~   74 (197)
T PRK12339          1 MESTIHFIGGIPGVGKTSISGYIARHRAID----IVLSGDYLREFLRP-YVDDEPVLAKSVYDAWEFYGSMTDEN-IVKG   74 (197)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCe----EEehhHHHHHHHHH-hcCCCCCcccccHHHHHHcCCcchhH-HHHH
Confidence            467899999999999999999999987532    24444544444321 11111            122111111 1110


Q ss_pred             -----HHHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHH-HHHHhhhhhc
Q psy2713          72 -----LSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEE-ILEHNIKQSM  140 (143)
Q Consensus        72 -----~~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~r~~~r~~  140 (143)
                           ......+..+.+.+...|..+|+|+++..+..++...     ..+.  .++++.+++++ +.+|...|.+
T Consensus        75 y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~-----~~~v--~~i~l~v~d~e~lr~Rl~~R~~  142 (197)
T PRK12339         75 YLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR-----TNNI--RAFYLYIRDAELHRSRLADRIN  142 (197)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH-----hcCe--EEEEEEeCCHHHHHHHHHHHhh
Confidence                 1122335555555544588999999999887764322     2233  34445555555 4466666653

>PRK01184 hypothetical protein; Provisional

Probab=99.48  E-value=1e-12  Score=89.70  Aligned_cols=121  Identities=15%  Similarity=0.202  Sum_probs=67.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-ccccCchhhhhHHHHHHHHHH-HHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-IFRVDNTEGYNIRQLSAREAQ-EDATKW   84 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~   84 (143)
                      .+|+|+|+|||||||+++ +++.++.     .+++.++..+...... +.+ .....+.....++.......+ ..+...
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~-----~~i~~~d~lr~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGI-----PVVVMGDVIREEVKKR-GLEPTDENIGKVAIDLRKELGMDAVAKRTVPK   74 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCC-----cEEEhhHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence            489999999999999987 6666653     3456555433332111 111 111111111111211111111 111222


Q ss_pred             H-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          85 L-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      + ..++..+|+|++ ......+.+.+ .+   +..+.+|.+.||.++..+|...|.
T Consensus        75 i~~~~~~~vvidg~-r~~~e~~~~~~-~~---~~~~~~i~v~~~~~~~~~Rl~~R~  125 (184)
T PRK01184         75 IREKGDEVVVIDGV-RGDAEVEYFRK-EF---PEDFILIAIHAPPEVRFERLKKRG  125 (184)
T ss_pred             HHhcCCCcEEEeCC-CCHHHHHHHHH-hC---CcccEEEEEECCHHHHHHHHHHcC
Confidence            3 334678999998 45555666666 54   234567888999999999988775

>PTZ00088 adenylate kinase 1; Provisional

Probab=99.48  E-value=2.5e-13  Score=95.65  Aligned_cols=128  Identities=17%  Similarity=0.194  Sum_probs=74.9

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCC-CccccCchhhhhHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSH-DIFRVDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      -+.|+-|++.|+|||||||+|+.|++.++..++     +.|+..+......... .........+..+...+....+.+.
T Consensus         3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~i-----s~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~   77 (229)
T PTZ00088          3 LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHI-----NMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDE   77 (229)
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhCCcEE-----ECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence            345666999999999999999999999887665     4454443322110000 0000000000001111111222222


Q ss_pred             H-HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          82 T-KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        82 ~-~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      + +.+......+|+|+.+.+..++..+.+ .    +-...++++.+|++++++|-..|+-
T Consensus        78 l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~-~----~~~~~vi~l~~~~~~~~~Rl~~Rr~  132 (229)
T PTZ00088         78 IAKVTDDCFKGFILDGFPRNLKQCKELGK-I----TNIDLFVNIYLPRNILIKKLLGRRI  132 (229)
T ss_pred             HHhhccccCceEEEecCCCCHHHHHHHHh-c----CCCCEEEEEeCCHHHHHHHHHcCcC
Confidence            2 212233567999999999888777665 3    2334578889999999999988863

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=99.47  E-value=5.1e-13  Score=89.69  Aligned_cols=112  Identities=14%  Similarity=0.131  Sum_probs=66.6

Q ss_pred             EccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhcCCeE
Q psy2713          12 VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEV   91 (143)
Q Consensus        12 ~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~   91 (143)
                      .|+|||||||+++.|+..++..+++.|.+......+...   .+.. +...  .    +..+....-..+...+..++..
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~---~g~~-~~~~--~----~~~~~~~~~~~~~~~~~~~~~~   70 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMA---SGEP-LNDD--D----RKPWLQALNDAAFAMQRTNKVS   70 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhcccc---CCCC-CChh--h----HHHHHHHHHHHHHHHHHcCCce
Confidence            499999999999999999987766666553211111110   1111 1111  1    1111111111111222334555


Q ss_pred             EEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          92 AIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        92 vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +|+ +++.....|    + ++++.+.++.+|++.||.+++.+|..+|.
T Consensus        71 viv-~s~~~~~~r----~-~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~  112 (163)
T PRK11545         71 LIV-CSALKKHYR----D-LLREGNPNLSFIYLKGDFDVIESRLKARK  112 (163)
T ss_pred             EEE-EecchHHHH----H-HHHccCCCEEEEEEECCHHHHHHHHHhcc
Confidence            555 788766655    4 45557888999999999999999988886

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=99.45  E-value=3.1e-13  Score=92.21  Aligned_cols=122  Identities=15%  Similarity=0.194  Sum_probs=68.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQED   80 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
                      ..+|++.|+|||||||+|+.|++.++..++     +.+++.+........     ..++.. +   ...........+..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~   73 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHL-----STGDLLRAEVASGSERGKQLQAIMES-G---DLVPLDTVLDLLKD   73 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCcEE-----eHHHHHHHHHhcCCHHHHHHHHHHHC-C---CCCCHHHHHHHHHH
Confidence            458999999999999999999999865444     554443332110000     000000 0   00000001111111


Q ss_pred             HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+......+..+|+|+.+.+..+...+..    ....+..++++.||.+.+.+|...|..
T Consensus        74 ~~~~~~~~~~~~i~dg~~~~~~q~~~~~~----~~~~~~~vi~l~~~~~~~~~Rl~~R~~  129 (188)
T TIGR01360        74 AMVAALGTSKGFLIDGYPREVKQGEEFER----RIGPPTLVLYFDCSEDTMVKRLLKRAE  129 (188)
T ss_pred             HHHcccCcCCeEEEeCCCCCHHHHHHHHH----cCCCCCEEEEEECCHHHHHHHHHcccc
Confidence            11111123678999998876655444433    223455678889999999999887753

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=99.44  E-value=3.6e-13  Score=90.13  Aligned_cols=109  Identities=19%  Similarity=0.276  Sum_probs=68.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      .-|+|+|+|||||||+++.||+.|+..++|+|.+........      ..++|..++++.++..+.   ..+.++   +.
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~s------I~eIF~~~GE~~FR~~E~---~vl~~l---~~   70 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMS------IAEIFEEEGEEGFRRLET---EVLKEL---LE   70 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcC------HHHHHHHHhHHHHHHHHH---HHHHHH---hh
Confidence            468999999999999999999999998887777655443322      335565555554443332   223222   22


Q ss_pred             cCCeEEEEeC--CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          87 NDGEVAIIDG--TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        87 ~~~~~vi~d~--~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      . +..||--+  +...++.|..+.+     ++   .+|++.+|.+++.+|-.
T Consensus        71 ~-~~~ViaTGGG~v~~~enr~~l~~-----~g---~vv~L~~~~e~l~~Rl~  113 (172)
T COG0703          71 E-DNAVIATGGGAVLSEENRNLLKK-----RG---IVVYLDAPFETLYERLQ  113 (172)
T ss_pred             c-CCeEEECCCccccCHHHHHHHHh-----CC---eEEEEeCCHHHHHHHhc
Confidence            2 22333222  3455666665554     33   45777889999988876

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=99.44  E-value=3.2e-12  Score=86.84  Aligned_cols=119  Identities=14%  Similarity=0.119  Sum_probs=69.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      ...+++++|++||||||+++.|+..++...++.+.+....-.+...   .+..+.+ .  ....+.........    ..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~---~g~~~~~-~--~~~~~~~~~~~~~~----~~   71 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMS---QGIPLTD-E--DRLPWLERLNDASY----SL   71 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHh---cCCCCCc-c--cchHHHHHHHHHHH----HH
Confidence            3468999999999999999999998876555454442211111111   1122111 1  11111111111111    11


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +..+...+|+ +++..+..|+..     ++.+.++.+|++.||.+++.+|-.+|.
T Consensus        72 ~~~~~~g~iv-~s~~~~~~R~~~-----r~~~~~~~~v~l~a~~~~l~~Rl~~R~  120 (176)
T PRK09825         72 YKKNETGFIV-CSSLKKQYRDIL-----RKSSPNVHFLWLDGDYETILARMQRRA  120 (176)
T ss_pred             HhcCCCEEEE-EEecCHHHHHHH-----HhhCCCEEEEEEeCCHHHHHHHHhccc
Confidence            2222334455 777777666544     456788899999999999999998885

>PRK13808 adenylate kinase; Provisional

Probab=99.44  E-value=8.8e-13  Score=97.00  Aligned_cols=121  Identities=18%  Similarity=0.201  Sum_probs=73.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      -|+|.|+|||||||+|..|++.++..+++     .+++.+..+.....     .+++..    +..+...+....+.+-+
T Consensus         2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is-----~gdlLR~~i~~~s~~g~~~~~~~~~----G~lVPdeiv~~li~e~l   72 (333)
T PRK13808          2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS-----TGDMLRAAVAAGTPVGLKAKDIMAS----GGLVPDEVVVGIISDRI   72 (333)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCceec-----ccHHHHHHhhcCChhhHHHHHHHHc----CCCCCHHHHHHHHHHHH
Confidence            37889999999999999999999876654     34433332211100     000000    00111111111221111


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCE-EEEEEeecCcHHHHHHhhhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFK-VLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ... .....+|+|+++.+.++.+.|.+ ++...++. -++|++.||++++++|-..|.
T Consensus        73 ~~~-~~~~G~ILDGFPRt~~QA~~L~~-ll~~~gi~PDlVI~LDVp~evll~Rl~~R~  128 (333)
T PRK13808         73 EQP-DAANGFILDGFPRTVPQAEALDA-LLKDKQLKLDAVVELRVNEGALLARVETRV  128 (333)
T ss_pred             hcc-cccCCEEEeCCCCCHHHHHHHHH-HHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence            111 12346999999999998888887 77665543 367889999999999988773

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=99.43  E-value=1.2e-12  Score=86.74  Aligned_cols=118  Identities=19%  Similarity=0.245  Sum_probs=69.5

Q ss_pred             EEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713          11 LVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQEDATKWLKN   87 (143)
Q Consensus        11 l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (143)
                      +.|+|||||||+|+.|+++++..     .++.++..+......  .+.   .......+..+...+....+...+.. ..
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~-----~is~~~llr~~~~~~--s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~-~~   72 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLV-----HISVGDLLREEIKSD--SELGKQIQEYLDNGELVPDELVIELLKERLEQ-PP   72 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHHTT--SHHHHHHHHHHHTTSS--HHHHHHHHHHHHHS-GG
T ss_pred             CcCCCCCChHHHHHHHHHhcCcc-----eechHHHHHHHHhhh--hHHHHHHHHHHHhhccchHHHHHHHHHHHHhh-hc
Confidence            57999999999999999998754     446666555433211  000   00000011112222222222221111 12


Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhh
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIK  137 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~  137 (143)
                      ....+|+|+.+.+..+.+.|.+ .+...+... .+|.+.||++++.+|...
T Consensus        73 ~~~g~ildGfPrt~~Qa~~l~~-~~~~~~~~~~~vi~L~~~~~~~~~R~~~  122 (151)
T PF00406_consen   73 CNRGFILDGFPRTLEQAEALEE-ILEEEGIPPDLVIFLDCPDETLIERLSQ  122 (151)
T ss_dssp             TTTEEEEESB-SSHHHHHHHHH-HHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred             ccceeeeeeccccHHHHHHHHH-HHhhcccchheeeccccchhhhhhhccc
Confidence            3578999999999998888887 776566555 788999999999998653

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK14528 adenylate kinase; Provisional

Probab=99.43  E-value=1.3e-12  Score=89.44  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=73.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      ..|++.|+|||||||+|+.|++.++..++     +.++..+........     ..+++.    +..+.....   ...+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~i-----s~~~~lr~~~~~~~~~g~~~~~~~~~----g~lvp~~~~---~~~~   69 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQI-----STGDILREAVKNQTAMGIEAKRYMDA----GDLVPDSVV---IGII   69 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCee-----eCCHHHHHHhhcCCHHHHHHHHHHhC----CCccCHHHH---HHHH
Confidence            35889999999999999999999876554     455544332221100     001110    000111111   1112


Q ss_pred             HHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhhc
Q psy2713          82 TKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        82 ~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+.+.  .....+|+|+.+.+.++-+.+.+ ++...+. .-.+|++.||.+++.+|-..|..
T Consensus        70 ~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~-~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~  130 (186)
T PRK14528         70 KDRIREADCKNGFLLDGFPRTVEQADALDA-LLKNEGKSIDKAINLEVPDGELLKRLLGRAE  130 (186)
T ss_pred             HHHHhCcCccCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence            22221  12346999999888888888877 7665443 33678899999999999988853

>PRK14530 adenylate kinase; Provisional

Probab=99.41  E-value=2.8e-12  Score=89.69  Aligned_cols=123  Identities=15%  Similarity=0.215  Sum_probs=68.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHH-H-HHHHHHHHHH-
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQ-L-SAREAQEDAT-   82 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~-   82 (143)
                      ...|+|+|+|||||||+|+.|++.++..++     +.+++.+..... ...+.....+.....+.. . ........++ 
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i-----~~g~~lr~~~~~-~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~   76 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHV-----TTGDALRANKQM-DISDMDTEYDTPGEYMDAGELVPDAVVNEIVE   76 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEE-----eccHHHHHhccC-CcccccchHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            346899999999999999999999876554     444443332100 000111000000000000 0 0001112222 


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +.+.. ...+|+|+.+.+.++.+.+.. ..   . .-.+|++.+|.+.+.+|-..|..
T Consensus        77 ~~l~~-~~~~IldG~pr~~~q~~~l~~-~~---~-~d~vI~Ld~~~~~l~~Rl~~R~~  128 (215)
T PRK14530         77 EALSD-ADGFVLDGYPRNLEQAEYLES-IT---D-LDVVLYLDVSEEELVDRLTGRRV  128 (215)
T ss_pred             HHHhc-CCCEEEcCCCCCHHHHHHHHH-hc---C-CCEEEEEeCCHHHHHHHHhCCCc
Confidence            22222 346899998888776666554 32   2 23468889999999999888764

>PLN02459 probable adenylate kinase

Probab=99.41  E-value=2e-12  Score=92.22  Aligned_cols=126  Identities=16%  Similarity=0.212  Sum_probs=74.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-ccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-IFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      ++.|+|.|+|||||||+|+.|++.++..++     +.++..+.......... ........+..+...+....+...+..
T Consensus        29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~i-----s~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~  103 (261)
T PLN02459         29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHI-----ATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEA  103 (261)
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCcEE-----eCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Confidence            356888999999999999999999887665     44444333222110000 000000111112222222222221111


Q ss_pred             H-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          85 L-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      . ......+|+|+++.+..+.+.|.. ..   .. -.+|++.||++.+++|-..|..+
T Consensus       104 ~~~~~~~g~iLDGFPRt~~Qa~~Le~-~~---~i-d~Vi~L~v~d~~l~~Rl~gR~~~  156 (261)
T PLN02459        104 GEEEGESGFILDGFPRTVRQAEILEG-VT---DI-DLVVNLKLREEVLVEKCLGRRIC  156 (261)
T ss_pred             ccccCCceEEEeCCCCCHHHHHHHHh-cC---CC-CEEEEEECCHHHHHHHhhccccc
Confidence            1 123467999999999988877766 42   22 34788899999999999988644

>PRK00625 shikimate kinase; Provisional

Probab=99.37  E-value=2.8e-12  Score=86.83  Aligned_cols=31  Identities=29%  Similarity=0.536  Sum_probs=27.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      .|+++|+|||||||+++.|++.++..++++|
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D   32 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD   32 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence            5899999999999999999999987665444

>PRK02496 adk adenylate kinase; Provisional

Probab=99.36  E-value=3.3e-12  Score=87.19  Aligned_cols=120  Identities=17%  Similarity=0.215  Sum_probs=71.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      +-|+|.|+|||||||+|+.|++.++..++     +.++..+........     ..+...    +...........+   
T Consensus         2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i-----~~~~~~~~~~~~~~~~g~~~~~~~~~----g~~~~~~~~~~~l---   69 (184)
T PRK02496          2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHI-----STGDILRQAIKEQTPLGIKAQGYMDK----GELVPDQLVLDLV---   69 (184)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEE-----EhHHHHHHHHhccChhHHHHHHHHHC----CCccCHHHHHHHH---
Confidence            34888999999999999999999875544     555444332211100     000000    0001111111111   


Q ss_pred             HHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcC-CEEEEEEeecCcHHHHHHhhhhh
Q psy2713          82 TKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMG-FKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        82 ~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+.+.  .....+|+|+.+.+..+.+.+.. .++..+ .+..++.+.+|.+.+.+|...|.
T Consensus        70 ~~~l~~~~~~~g~vldGfPr~~~q~~~l~~-~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~  129 (184)
T PRK02496         70 QERLQQPDAANGWILDGFPRKVTQAAFLDE-LLQEIGQSGERVVNLDVPDDVVVERLLARG  129 (184)
T ss_pred             HHHHhCcCccCCEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEeCCHHHHHHHHhcCC
Confidence            12221  12346999999988887777776 665544 34467888999999999988774

>PRK14526 adenylate kinase; Provisional

Probab=99.36  E-value=2.8e-12  Score=89.36  Aligned_cols=118  Identities=18%  Similarity=0.349  Sum_probs=68.8

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      |++.|+|||||||+|+.|++.++..++     +.++..+.......  +   .++++    .+......+....+.+.+.
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~~~i-----s~G~llr~~~~~~t~~g~~i~~~~~----~g~lvpd~~~~~lv~~~l~   73 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNYYHI-----STGDLFRENILNSTPLGKEIKQIVE----NGQLVPDSITIKIVEDKIN   73 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCcee-----ecChHHHHhcccCChhhHHHHHHHH----cCccCChHHHHHHHHHHHh
Confidence            788999999999999999999876554     44444333211100  0   00010    0001111111122222211


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      .. .....+|+|+++.+..+.+.+.+ .+..    ..++++.+|++++.+|...|..+
T Consensus        74 ~~-~~~~g~ilDGfPR~~~Qa~~l~~-~~~~----~~vi~l~~~~~~~~~Rl~~R~~~  125 (211)
T PRK14526         74 TI-KNNDNFILDGFPRNINQAKALDK-FLPN----IKIINFLIDEELLIKRLSGRRIC  125 (211)
T ss_pred             cc-cccCcEEEECCCCCHHHHHHHHH-hcCC----CEEEEEECCHHHHHHHHHCCCcc
Confidence            11 12456899999999888777766 4321    34567779999999999988644

>PRK13948 shikimate kinase; Provisional

Probab=99.34  E-value=5.5e-12  Score=85.99  Aligned_cols=109  Identities=24%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      +..|+++|+|||||||+++.|++.+++.++|+|.+     .+...+. ...++|...++..+  ++. ....+..+   +
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~-----ie~~~g~-si~~if~~~Ge~~f--R~~-E~~~l~~l---~   77 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY-----IERVTGK-SIPEIFRHLGEAYF--RRC-EAEVVRRL---T   77 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH-----HHHHHhC-CHHHHHHHhCHHHH--HHH-HHHHHHHH---H
Confidence            57999999999999999999999998776655543     3333221 11233433332222  111 11222222   2


Q ss_pred             hcCCeEEEE--eCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713          86 KNDGEVAII--DGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        86 ~~~~~~vi~--d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                      .. +..||.  .++...+++++.+.+     .+ .  +|++.+|.+++.+|.
T Consensus        78 ~~-~~~VIa~GgG~v~~~~n~~~l~~-----~g-~--vV~L~~~~e~l~~Rl  120 (182)
T PRK13948         78 RL-DYAVISLGGGTFMHEENRRKLLS-----RG-P--VVVLWASPETIYERT  120 (182)
T ss_pred             hc-CCeEEECCCcEEcCHHHHHHHHc-----CC-e--EEEEECCHHHHHHHh
Confidence            22 323333  234556666555443     22 2  456678999999886

>KOG3062|consensus

Probab=99.32  E-value=8.4e-12  Score=86.28  Aligned_cols=121  Identities=20%  Similarity=0.178  Sum_probs=83.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCC-ceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHK-SKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      .+|++||.|.|||||.|+.|.+.|...+.+ +..+..|.-    ++-..... |.. +.....+|..     +...++.-
T Consensus         2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~~~ns~-y~~-s~~EK~lRg~-----L~S~v~R~   70 (281)
T KOG3062|consen    2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGIEKNSN-YGD-SQAEKALRGK-----LRSAVDRS   70 (281)
T ss_pred             CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCCCCccc-ccc-cHHHHHHHHH-----HHHHHHhh
Confidence            379999999999999999999999877654 444433322    11111112 211 1222233332     33333333


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      -+.+.+||+|+-|+-+..|-.++. +++..+....+|++.||.+.|.+.|..|-
T Consensus        71 Lsk~~iVI~DslNyIKGfRYeLyC-~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~  123 (281)
T KOG3062|consen   71 LSKGDIVIVDSLNYIKGFRYELYC-EAKAARTTYCVVHTAVPQELCREWNSERE  123 (281)
T ss_pred             cccCcEEEEecccccccceeeeee-ehhccceeEEEEEecCCHHHHHHhcccCC
Confidence            345889999999999999999999 98888888888999999999999996653

>PRK00131 aroK shikimate kinase; Reviewed

Probab=99.32  E-value=1.6e-11  Score=82.66  Aligned_cols=33  Identities=18%  Similarity=0.328  Sum_probs=28.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      .++.+|+|+|+|||||||+|+.|++.++..+++
T Consensus         2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d   34 (175)
T PRK00131          2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID   34 (175)
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence            356799999999999999999999998765543

>PRK07261 topology modulation protein; Provisional

Probab=99.30  E-value=3.7e-11  Score=81.26  Aligned_cols=99  Identities=18%  Similarity=0.240  Sum_probs=58.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN   87 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (143)
                      -|+++|+|||||||+|+.|++.++...++.|.+     .-.       .. +.....+          .....+.+.+..
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~-----~~~-------~~-~~~~~~~----------~~~~~~~~~~~~   58 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL-----HFQ-------PN-WQERDDD----------DMIADISNFLLK   58 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE-----Eec-------cc-cccCCHH----------HHHHHHHHHHhC
Confidence            489999999999999999998876554433333     110       01 1110011          111112223332


Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                       + ..|+|+++........+..       ++. +|.+.+|...|+.|.++|.
T Consensus        59 -~-~wIidg~~~~~~~~~~l~~-------ad~-vI~Ld~p~~~~~~R~lkR~  100 (171)
T PRK07261         59 -H-DWIIDGNYSWCLYEERMQE-------ADQ-IIFLNFSRFNCLYRAFKRY  100 (171)
T ss_pred             -C-CEEEcCcchhhhHHHHHHH-------CCE-EEEEcCCHHHHHHHHHHHH
Confidence             3 3999999876432322222       222 5777899999999998884

>PRK13946 shikimate kinase; Provisional

Probab=99.30  E-value=1e-11  Score=84.87  Aligned_cols=114  Identities=19%  Similarity=0.245  Sum_probs=64.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .+..|+++|+|||||||+++.|++.++..++++|.+     .....+. ...+++...+....  + ..    -..+...
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~-----~~~~~g~-~~~e~~~~~ge~~~--~-~~----e~~~l~~   75 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE-----IERAARM-TIAEIFAAYGEPEF--R-DL----ERRVIAR   75 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH-----HHHHhCC-CHHHHHHHHCHHHH--H-HH----HHHHHHH
Confidence            357899999999999999999999998887777653     2221110 00111211111111  1 11    1122222


Q ss_pred             HhcCCeEEEEeC--CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          85 LKNDGEVAIIDG--TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        85 l~~~~~~vi~d~--~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +...+..||...  ++..+..|+.+.+     .+   +.|++.+|.+++.+|..+|.
T Consensus        76 l~~~~~~Vi~~ggg~~~~~~~r~~l~~-----~~---~~v~L~a~~e~~~~Rl~~r~  124 (184)
T PRK13946         76 LLKGGPLVLATGGGAFMNEETRAAIAE-----KG---ISVWLKADLDVLWERVSRRD  124 (184)
T ss_pred             HHhcCCeEEECCCCCcCCHHHHHHHHc-----CC---EEEEEECCHHHHHHHhcCCC
Confidence            222344455442  4556655555443     22   34778899999999987664

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=99.29  E-value=1.7e-10  Score=87.99  Aligned_cols=124  Identities=19%  Similarity=0.231  Sum_probs=75.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh---c----------CCCCccccC-------ch
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL---Y----------NSHDIFRVD-------NT   64 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~---~----------~~~~~~~~~-------~~   64 (143)
                      .|.+|+++|+|||||||+|..|+.+++..    .+++.|.++..+...   .          ..+......       ..
T Consensus       254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~----~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~  329 (475)
T PRK12337        254 RPLHVLIGGVSGVGKSVLASALAYRLGIT----RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPT  329 (475)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCc----EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccc
Confidence            58999999999999999999999998763    255667665543210   0          000111000       00


Q ss_pred             hhhhHHHH-----HHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          65 EGYNIRQL-----SAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        65 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      ....+...     .+...++.+++..-..|..+|+|+....+...+     .....+..++.+.+.|++++.++++..
T Consensus       330 ~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~-----~~~~~~~~~i~flv~isdeeeH~~Rf~  402 (475)
T PRK12337        330 RAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR-----HPYQAGALVVPMLVTLPDEALHRRRFE  402 (475)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH-----HHHhcCCceEEEEEEECCHHHHHHHHH
Confidence            10111111     122335555655544588999999999998654     222345666777888898886665543

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=99.28  E-value=2.9e-10  Score=77.94  Aligned_cols=129  Identities=15%  Similarity=0.045  Sum_probs=68.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh------hhhhhhhhcCCCCccccCchhhhhHHHHH-HHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA------YRRKHLELYNSHDIFRVDNTEGYNIRQLS-AREAQE   79 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   79 (143)
                      ++|++.|++||||||+++.|++.+...|.+...+....      ..+..+...   . ..........+.... -.....
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~r~~~~~   76 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDP---E-DEKMDPRAELLLFAADRAQHVE   76 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhcc---C-ccCCCHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999977677665553221      111111110   0 000001100000000 011112


Q ss_pred             HHHHHHhcCCeEEEEeCCchh------------HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          80 DATKWLKNDGEVAIIDGTTAT------------MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        80 ~~~~~l~~~~~~vi~d~~~~~------------~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +.+......+..+|+|-....            ......+.. +......+..++++.+|.+++.+|...|..
T Consensus        77 ~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~  148 (200)
T cd01672          77 EVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALND-LATGGLKPDLTILLDIDPEVGLARIEARGR  148 (200)
T ss_pred             HHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHH-HHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence            222222235788999832211            112233333 333333455778889999999999988764

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>PRK06696 uridine kinase; Validated

Probab=99.27  E-value=2.8e-11  Score=85.11  Aligned_cols=46  Identities=26%  Similarity=0.341  Sum_probs=38.5

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ...|.+|.+.|+|||||||+|+.|++.|+..+.....++.|+|...
T Consensus        19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~   64 (223)
T PRK06696         19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP   64 (223)
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence            3468899999999999999999999999776766677778887544

>PRK12338 hypothetical protein; Provisional

Probab=99.27  E-value=1.8e-10  Score=84.37  Aligned_cols=128  Identities=17%  Similarity=0.169  Sum_probs=72.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc----ccc----------C----chh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI----FRV----------D----NTE   65 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~----------~----~~~   65 (143)
                      +.|.+|+++|+|||||||+|+.|+++++...    ++..|.++..+... .+.++    ...          .    +.+
T Consensus         2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~----~~~tD~~r~~~~~~-~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~   76 (319)
T PRK12338          2 RKPYVILIGSASGIGKSTIASELARTLNIKH----LIETDFIREVVRGI-IGKEYAPALHKSSYNAYTALRDKENFKNNE   76 (319)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHCCCeE----EccChHHHHHHcCC-CCcccCchhhcccHHHHhhcCCcccccchH
Confidence            4678999999999999999999999987543    23445444443221 01110    000          0    000


Q ss_pred             hhhH-----HHHHHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          66 GYNI-----RQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        66 ~~~~-----~~~~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ...+     ....+...++.+++.....|..+|+++....+.....  . .+. ....+.++.+..+.++.++|-..|.+
T Consensus        77 ~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~--~-~~~-~~~~v~~~vl~~dee~h~~Rf~~R~~  152 (319)
T PRK12338         77 ELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI--E-QFE-ENASIHFFILSADEEVHKERFVKRAM  152 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh--h-hhc-ccCceEEEEEECCHHHHHHHHHHhhh
Confidence            0001     1112333445555544456889999999888764432  1 111 22345555556566667777777654

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=99.27  E-value=5.2e-11  Score=89.37  Aligned_cols=98  Identities=23%  Similarity=0.314  Sum_probs=71.1

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccC-chhhhhHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVD-NTEGYNIRQLSAR   75 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~   75 (143)
                      ..+|.+|+|+|+.||||||.+.+||.+|...+.++.++++|.||+..++      .+.+.++|... +.++..    ++.
T Consensus        97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~----Iak  172 (451)
T COG0541          97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVE----IAK  172 (451)
T ss_pred             CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHH----HHH
Confidence            4568999999999999999999999999889999999999999999765      34577888653 222222    223


Q ss_pred             HHHHHHHHHH-hcCCeEEEEeCCchhHHHHHHHH
Q psy2713          76 EAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIH  108 (143)
Q Consensus        76 ~~~~~~~~~l-~~~~~~vi~d~~~~~~~~r~~~~  108 (143)
                      ..+    +.+ ...-+++|+|+.....-.-+.+.
T Consensus       173 ~al----~~ak~~~~DvvIvDTAGRl~ide~Lm~  202 (451)
T COG0541         173 AAL----EKAKEEGYDVVIVDTAGRLHIDEELMD  202 (451)
T ss_pred             HHH----HHHHHcCCCEEEEeCCCcccccHHHHH
Confidence            333    333 33457899999886664433333

>PRK07667 uridine kinase; Provisional

Probab=99.27  E-value=8.1e-11  Score=81.05  Aligned_cols=44  Identities=18%  Similarity=0.362  Sum_probs=39.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .+.+|.|+|+|||||||+|+.|++.++..+.++.+++.|++...
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~   59 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE   59 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence            35799999999999999999999999888899999999986543

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=99.26  E-value=3.6e-11  Score=79.51  Aligned_cols=30  Identities=23%  Similarity=0.341  Sum_probs=26.0

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      |+++|+|||||||+|+.|++.+++.+++.+
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d   31 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD   31 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence            789999999999999999999977655444

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK13949 shikimate kinase; Provisional

Probab=99.26  E-value=2.5e-11  Score=81.97  Aligned_cols=33  Identities=33%  Similarity=0.379  Sum_probs=28.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      -|+++|+|||||||+++.|++.++..++++|.+
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~   35 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFF   35 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHH
Confidence            589999999999999999999998777765543

>PRK08233 hypothetical protein; Provisional

Probab=99.25  E-value=5.6e-11  Score=80.66  Aligned_cols=28  Identities=21%  Similarity=0.415  Sum_probs=25.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      |++.+|++.|+|||||||+|+.|++.++
T Consensus         1 ~~~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          1 KKTKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4578999999999999999999999875

>PRK00698 tmk thymidylate kinase; Validated

Probab=99.25  E-value=5.8e-10  Score=77.05  Aligned_cols=35  Identities=14%  Similarity=0.247  Sum_probs=29.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCcee
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV   39 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~   39 (143)
                      +..+|++.|++||||||+++.|++.+...+..+..
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~   36 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF   36 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence            56899999999999999999999998766544333

>PTZ00301 uridine kinase; Provisional

Probab=99.25  E-value=8.3e-11  Score=81.93  Aligned_cols=45  Identities=20%  Similarity=0.244  Sum_probs=33.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHcc-CCCC-ceeEehhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTW-TDHK-SKVFSVSAYRRK   48 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~-~~~~~~d~~~~~   48 (143)
                      |+..+|.+.|+|||||||+|+.|++.+.. .+.. +.+++.|+|...
T Consensus         1 ~~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~   47 (210)
T PTZ00301          1 MPCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD   47 (210)
T ss_pred             CCCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccC
Confidence            45689999999999999999999987742 2322 346777877543

>PRK06217 hypothetical protein; Validated

Probab=99.24  E-value=1.2e-10  Score=79.60  Aligned_cols=105  Identities=17%  Similarity=0.160  Sum_probs=59.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      +.|+|+|.|||||||+|+.|++.++..+++.     |.+....    .+..+... ....         .....+.+.+.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~-----D~~~~~~----~~~~~~~~-~~~~---------~~~~~~~~~~~   62 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDT-----DDYFWLP----TDPPFTTK-RPPE---------ERLRLLLEDLR   62 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEc-----Cceeecc----CCCCcccc-CCHH---------HHHHHHHHHHh
Confidence            3599999999999999999999987655444     4332211    01111111 1110         11122222222


Q ss_pred             cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      . +..+|+|+.....  .+.+..    .  .. .+|++.+|.+++..|-..|..
T Consensus        63 ~-~~~~vi~G~~~~~--~~~~~~----~--~d-~~i~Ld~~~~~~~~Rl~~R~~  106 (183)
T PRK06217         63 P-REGWVLSGSALGW--GDPLEP----L--FD-LVVFLTIPPELRLERLRLREF  106 (183)
T ss_pred             c-CCCEEEEccHHHH--HHHHHh----h--CC-EEEEEECCHHHHHHHHHcCcc
Confidence            2 3468888776542  222222    2  22 256778999999999988753

>PRK06547 hypothetical protein; Provisional

Probab=99.23  E-value=1.8e-10  Score=77.91  Aligned_cols=117  Identities=17%  Similarity=0.087  Sum_probs=65.6

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHH------
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSARE------   76 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------   76 (143)
                      ++.+.+|+++|+|||||||+|+.|++.++...+     +.|++......    .+     . ....+.+.....      
T Consensus        12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~-----~~d~~~~~~~~----~~-----~-~~~~l~~~~l~~g~~~~~   76 (172)
T PRK06547         12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLV-----HLDDLYPGWHG----LA-----A-ASEHVAEAVLDEGRPGRW   76 (172)
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCee-----cccceeccccc----CC-----h-HHHHHHHHHHhCCCCcee
Confidence            456789999999999999999999998765444     44443221000    00     0 000000000000      


Q ss_pred             HH----HHHHHH-HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          77 AQ----EDATKW-LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        77 ~~----~~~~~~-l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+    ...... ....+.++|+++.....   ..+.+ ++.+ +..++.|++.+|.++..+|.++|-
T Consensus        77 ~yd~~~~~~~~~~~l~~~~vVIvEG~~al~---~~~r~-~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd  139 (172)
T PRK06547         77 RWDWANNRPGDWVSVEPGRRLIIEGVGSLT---AANVA-LASL-LGEVLTVWLDGPEALRKERALARD  139 (172)
T ss_pred             cCCCCCCCCCCcEEeCCCCeEEEEehhhcc---HHHHH-Hhcc-CCCEEEEEEECCHHHHHHHHHhcC
Confidence            00    000000 01134578888876542   23455 5544 445678999999999999999883

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=99.23  E-value=2.9e-11  Score=76.96  Aligned_cols=33  Identities=33%  Similarity=0.578  Sum_probs=28.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +|+++|+|||||||+|+.|++.++.     .+++.|++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~-----~~i~~d~~   33 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGF-----PVISMDDL   33 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTC-----EEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCC-----eEEEecce
Confidence            6899999999999999999999864     45677774

...

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=99.22  E-value=1.4e-10  Score=79.45  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..+++|+|+|||||||+++.|+..++
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            35899999999999999999987754

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=99.22  E-value=1.5e-09  Score=74.61  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=30.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      +.++|++.|++||||||+++.|++.+...|++...+
T Consensus         2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~   37 (195)
T TIGR00041         2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT   37 (195)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            357999999999999999999999998777655443

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>PRK13947 shikimate kinase; Provisional

Probab=99.22  E-value=2.8e-11  Score=81.55  Aligned_cols=33  Identities=18%  Similarity=0.320  Sum_probs=28.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .|+++|+|||||||+|+.|++.|++.+++.|.+
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~   35 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE   35 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh
Confidence            489999999999999999999998877655543

>PRK04040 adenylate kinase; Provisional

Probab=99.21  E-value=3.7e-10  Score=77.49  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      +.+|+++|+|||||||+++.|++.+.   .....++.+++...
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~~   41 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVMLE   41 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHHH
Confidence            67999999999999999999999984   12345666766544

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=99.20  E-value=1.4e-09  Score=79.07  Aligned_cols=127  Identities=18%  Similarity=0.197  Sum_probs=71.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh---h----------cCCCCccccC-chhhhhH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE---L----------YNSHDIFRVD-NTEGYNI   69 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~---~----------~~~~~~~~~~-~~~~~~~   69 (143)
                      ..|.+|+++|++||||||+|..|+++|+..    .+++.|.+++.+-.   .          +......... ..+...+
T Consensus        90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~----~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l  165 (301)
T PRK04220         90 KEPIIILIGGASGVGTSTIAFELASRLGIR----SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI  165 (301)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence            358899999999999999999999998532    36788877744311   0          1111111111 1111111


Q ss_pred             HHH-----HHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh-hhhh
Q psy2713          70 RQL-----SAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN-IKQS  139 (143)
Q Consensus        70 ~~~-----~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~-~~r~  139 (143)
                      ...     .....++.+++.....|..+|+.+....+...+   + ...++.- ++.+.+..++++.++.+ ..|.
T Consensus       166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~---~-~~~~~~~-~i~~~l~i~~ee~h~~RF~~R~  236 (301)
T PRK04220        166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIK---E-KYLENPN-VFMFVLTLSDEEAHKARFYARA  236 (301)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHH---H-hhhcCCC-EEEEEEEECCHHHHHHHHHHHH
Confidence            111     122235555554434578999999998886322   2 2223333 33445666776655554 4444

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.20  E-value=2.9e-10  Score=77.43  Aligned_cols=41  Identities=34%  Similarity=0.405  Sum_probs=37.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      +|.++|.|||||||+|+.|++.+...+.++.+++.|+|...
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~   41 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP   41 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence            58999999999999999999999887888999999998753

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK13973 thymidylate kinase; Provisional

Probab=99.20  E-value=2e-09  Score=75.23  Aligned_cols=132  Identities=14%  Similarity=0.048  Sum_probs=69.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh------hhhhhhhhcCCCCccccCchhhhhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA------YRRKHLELYNSHDIFRVDNTEGYNIRQLSAREA   77 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (143)
                      |+..+|+|.|++||||||+++.|+++|...++++.......      ..+....... ..-+++  .....+...--...
T Consensus         1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~-~~~~~~--~~~~ll~~a~r~~~   77 (213)
T PRK13973          1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGA-AELYGP--RMEALLFAAARDDH   77 (213)
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCC-ccCCCH--HHHHHHHHHHHHHH
Confidence            45689999999999999999999999987777665553221      1111111100 011111  00001110000112


Q ss_pred             HHHHHHHHhcCCeEEEEeCCchhH------------HHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          78 QEDATKWLKNDGEVAIIDGTTATM------------EKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        78 ~~~~~~~l~~~~~~vi~d~~~~~~------------~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +...+......|.+||.|-.....            +....+.. .+.....+-+++.+.||.+++.+|..+|.
T Consensus        78 ~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~-~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~  150 (213)
T PRK13973         78 VEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALER-VAINGVMPDLTLILDIPAEVGLERAAKRR  150 (213)
T ss_pred             HHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHH-HHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            222222222347788887654211            11112221 21111245677888999999999988775

>KOG3347|consensus

Probab=99.19  E-value=1.2e-10  Score=75.87  Aligned_cols=107  Identities=15%  Similarity=0.209  Sum_probs=63.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh-hhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH-LELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      ...|+++|-||+||||+|.+|++.++..+++     ..++-+.. +-     +-|+.. -....+.+   ...++.+-..
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~-----isd~vkEn~l~-----~gyDE~-y~c~i~DE---dkv~D~Le~~   72 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIE-----ISDLVKENNLY-----EGYDEE-YKCHILDE---DKVLDELEPL   72 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHhCCceEe-----hhhHHhhhcch-----hccccc-ccCccccH---HHHHHHHHHH
Confidence            3579999999999999999999998876653     33332221 11     001100 01111111   2334445555


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +..+|.+|=+.+....++   +|.+          +++-++||...+.+|-..|.
T Consensus        73 m~~Gg~IVDyHgCd~Fpe---rwfd----------lVvVLr~~~s~LY~RL~sRg  114 (176)
T KOG3347|consen   73 MIEGGNIVDYHGCDFFPE---RWFD----------LVVVLRTPNSVLYDRLKSRG  114 (176)
T ss_pred             HhcCCcEEeecccCccch---hhee----------EEEEEecCchHHHHHHHHcC
Confidence            556666665666655553   2443          34557899999999987764

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=99.18  E-value=1.4e-10  Score=78.52  Aligned_cols=34  Identities=24%  Similarity=0.260  Sum_probs=28.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      ++..|+++|++||||||+++.|++.++...+++|
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D   36 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD   36 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence            4567999999999999999999999876555444

>PRK08118 topology modulation protein; Reviewed

Probab=99.18  E-value=2.6e-10  Score=76.86  Aligned_cols=98  Identities=20%  Similarity=0.168  Sum_probs=57.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN   87 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (143)
                      -|+++|+|||||||+|+.|++.++...++.|.+     ...       .. +.....+           ....+.+.+..
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l-----~~~-------~~-w~~~~~~-----------~~~~~~~~~~~   58 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL-----FWK-------PN-WEGVPKE-----------EQITVQNELVK   58 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchh-----hcc-------cC-CcCCCHH-----------HHHHHHHHHhc
Confidence            489999999999999999999988766644433     111       00 1000111           01111111111


Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                       ....|+|+.....  .+.... .     .+ .+|++.+|.+.+..|.++|.
T Consensus        59 -~~~wVidG~~~~~--~~~~l~-~-----~d-~vi~Ld~p~~~~~~R~~~R~  100 (167)
T PRK08118         59 -EDEWIIDGNYGGT--MDIRLN-A-----AD-TIIFLDIPRTICLYRAFKRR  100 (167)
T ss_pred             -CCCEEEeCCcchH--HHHHHH-h-----CC-EEEEEeCCHHHHHHHHHHHH
Confidence             3468999975532  122122 1     22 35778899999999888884

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.18  E-value=3.6e-10  Score=77.85  Aligned_cols=39  Identities=23%  Similarity=0.442  Sum_probs=33.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCC----ceeEehhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHK----SKVFSVSAYR   46 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~----~~~~~~d~~~   46 (143)
                      +|.++|+|||||||+|+.|+..|+..+..    ...++.|.+.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~   43 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY   43 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence            68999999999999999999999987776    4566677654

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=99.17  E-value=7e-11  Score=92.70  Aligned_cols=115  Identities=13%  Similarity=0.167  Sum_probs=68.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      .....|+++|+|||||||+++.|++.+++.++|+|..     .+...+ .+..++|...+++.++..+   .+.+.+   
T Consensus         4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~-----ie~~~g-~si~eif~~~Ge~~FR~~E---~~~l~~---   71 (542)
T PRK14021          4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE-----IEREIG-MSIPSYFEEYGEPAFREVE---ADVVAD---   71 (542)
T ss_pred             CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH-----HHHHHC-cCHHHHHHHHHHHHHHHHH---HHHHHH---
Confidence            3456899999999999999999999999887755543     333221 1123445444433332222   122222   


Q ss_pred             HHhcCCeEEEEeC---CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          84 WLKNDGEVAIIDG---TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        84 ~l~~~~~~vi~d~---~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      .+...+  .|+.+   ....++.++.+.+ .+++.+   .+|++.+|.+++.+|..
T Consensus        72 ~~~~~~--~VIs~GGG~v~~~~n~~~L~~-~~~~~g---~vv~L~~~~~~l~~Rl~  121 (542)
T PRK14021         72 MLEDFD--GIFSLGGGAPMTPSTQHALAS-YIAHGG---RVVYLDADPKEAMERAN  121 (542)
T ss_pred             HHhcCC--eEEECCCchhCCHHHHHHHHH-HHhcCC---EEEEEECCHHHHHHHHh
Confidence            222222  34433   2355667777766 666554   35677889999999853

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.17  E-value=4.5e-10  Score=78.13  Aligned_cols=42  Identities=24%  Similarity=0.431  Sum_probs=34.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      .++.+|.++|+|||||||+++.|++.++  +.++.+++.|++..
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~~~   45 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSYYK   45 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcccc
Confidence            4678999999999999999999999983  34567778877643

>PRK08356 hypothetical protein; Provisional

Probab=99.17  E-value=4.4e-10  Score=77.51  Aligned_cols=119  Identities=19%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc-c-ccC-----------chhhhhHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI-F-RVD-----------NTEGYNIRQL   72 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~   72 (143)
                      .++|+++|+|||||||+|+.|++ ++..     .++.++..+..... .+.++ | ...           ...+...+..
T Consensus         5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~-----~is~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~   77 (195)
T PRK08356          5 KMIVGVVGKIAAGKTTVAKFFEE-KGFC-----RVSCSDPLIDLLTH-NVSDYSWVPEVPFKGEPTRENLIELGRYLKEK   77 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHH-CCCc-----EEeCCCcccccccc-cccccccccHHHHhhccccccHHHHHHHHHHh
Confidence            46899999999999999999964 4322     34444321111110 01111 1 000           0011111110


Q ss_pred             H-HHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          73 S-AREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        73 ~-~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      . ....+..+.+.+.. ...+++|+. ....+.+.+.. .    +.  .+|++.||.+++.+|...|..
T Consensus        78 yG~~~~~~~~~~~~~~-~~~ividG~-r~~~q~~~l~~-~----~~--~vi~l~~~~~~~~~Rl~~R~~  137 (195)
T PRK08356         78 YGEDILIRLAVDKKRN-CKNIAIDGV-RSRGEVEAIKR-M----GG--KVIYVEAKPEIRFERLRRRGA  137 (195)
T ss_pred             cCcHHHHHHHHHHhcc-CCeEEEcCc-CCHHHHHHHHh-c----CC--EEEEEECCHHHHHHHHHhcCC
Confidence            0 00011122233333 336899988 66666666554 2    22  456778899998888777754

>PRK03839 putative kinase; Provisional

Probab=99.16  E-value=1.1e-10  Score=79.45  Aligned_cols=30  Identities=27%  Similarity=0.450  Sum_probs=26.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      .|+++|+|||||||+|+.|++.++..++++
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~   31 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL   31 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence            589999999999999999999998665533

>PRK06761 hypothetical protein; Provisional

Probab=99.15  E-value=6.4e-10  Score=80.43  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=71.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh-hhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY-RRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      |++.+|+++|+|||||||+++.|++.+...+++.+.+..++. .+...   .+...+..+  +...+.+... .....+.
T Consensus         1 mm~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~---~~~~~~~~e--er~~~l~~~~-~f~~~l~   74 (282)
T PRK06761          1 MMTKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY---DGVACFTKE--EFDRLLSNYP-DFKEVLL   74 (282)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh---ccccCCCHH--HHHHHHHhhh-HHHHHHH
Confidence            346799999999999999999999999888888777644332 21111   112223221  1111111100 0011122


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                      +.....|..+|+-+......+|+.+.+..+.  ...+..++ .+|.+.+.+|...|
T Consensus        75 ~~~~~~g~~~i~~~~~l~~~yr~~~~~~~~~--~~~v~~~h-~~p~e~i~~R~~~r  127 (282)
T PRK06761         75 KNVLKKGDYYLLPYRKIKNEFGDQFSDELFN--DISKNDIY-ELPFDKNTELITDR  127 (282)
T ss_pred             HHHHHcCCeEEEEehhhhHHHhhhhhhhhcc--cceeeeee-cCCHHHHHHHHHHH
Confidence            2222346778888888888777776631111  22344455 67777777776555

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.15  E-value=4.9e-10  Score=77.73  Aligned_cols=42  Identities=29%  Similarity=0.440  Sum_probs=36.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ++.+|.+.|.|||||||+|+.|...|+..  .+.+++.|+|...
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~   48 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKD   48 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccc
Confidence            34799999999999999999999999854  6788899988654

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.15  E-value=6.9e-10  Score=76.60  Aligned_cols=108  Identities=23%  Similarity=0.289  Sum_probs=64.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccCc-hhhhhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVDN-TEGYNIRQLSAREAQ   78 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (143)
                      |.+|+|+|++|+||||.+.+|+.++...+.++.+++.|.+|.....      ...+.+++.... .+..        ..+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~--------~~~   72 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA--------EIA   72 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH--------HHH
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH--------HHH
Confidence            7899999999999999999999998777999999999999877543      122344433211 1111        112


Q ss_pred             HHHHHHH-hcCCeEEEEeCCchhH---HHHHHHHHHHHhhc-CCEEEEE
Q psy2713          79 EDATKWL-KNDGEVAIIDGTTATM---EKRKQIHDYFARKM-GFKVLFV  122 (143)
Q Consensus        79 ~~~~~~l-~~~~~~vi~d~~~~~~---~~r~~~~~~~~~~~-~~~~~~v  122 (143)
                      .+.++.+ .+..+.+++|++...+   +..+.+.+ +.+.. +..+++|
T Consensus        73 ~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~-~~~~~~~~~~~LV  120 (196)
T PF00448_consen   73 REALEKFRKKGYDLVLIDTAGRSPRDEELLEELKK-LLEALNPDEVHLV  120 (196)
T ss_dssp             HHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHH-HHHHHSSSEEEEE
T ss_pred             HHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHH-HhhhcCCccceEE
Confidence            2333333 3345789999986433   33344444 44332 4455433

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=99.15  E-value=1.1e-10  Score=74.63  Aligned_cols=22  Identities=36%  Similarity=0.753  Sum_probs=21.1

Q ss_pred             EEEEccCCCChhHHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      |+++|.|||||||+|+.|++.+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999997

...

>KOG0780|consensus

Probab=99.14  E-value=3.7e-10  Score=83.74  Aligned_cols=100  Identities=19%  Similarity=0.286  Sum_probs=73.5

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccC-chhhhhHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVD-NTEGYNIRQLSAR   75 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~   75 (143)
                      .-+|.+|+|+|+.||||||.+.++|.++...|+++-+++.|.||...++      .....++|... ..++..    ++.
T Consensus        98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~----ia~  173 (483)
T KOG0780|consen   98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVK----IAS  173 (483)
T ss_pred             cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHH----HHH
Confidence            3468899999999999999999999999999999999999999998765      23466777632 222222    222


Q ss_pred             HHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHH
Q psy2713          76 EAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHD  109 (143)
Q Consensus        76 ~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~  109 (143)
                      +..   ..+-+++..++|+|++.........+.+
T Consensus       174 egv---~~fKke~fdvIIvDTSGRh~qe~sLfeE  204 (483)
T KOG0780|consen  174 EGV---DRFKKENFDVIIVDTSGRHKQEASLFEE  204 (483)
T ss_pred             HHH---HHHHhcCCcEEEEeCCCchhhhHHHHHH
Confidence            222   2333567788999999987766555554

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=99.14  E-value=2.6e-10  Score=78.64  Aligned_cols=123  Identities=14%  Similarity=0.101  Sum_probs=66.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh-----hhhcCCCCccccCc---------------hhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH-----LELYNSHDIFRVDN---------------TEG   66 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~---------------~~~   66 (143)
                      .+|.++|++||||||+++.|++.++...+++|.+..+.+....     ....-+.+.+..++               ...
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~   81 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE   81 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence            3799999999999999999999888776666555333322110     00011222222222               111


Q ss_pred             hhHHHHHHHH-HHHHHHHHHhc--CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          67 YNIRQLSARE-AQEDATKWLKN--DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        67 ~~~~~~~~~~-~~~~~~~~l~~--~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ....+.+... ....+.+.+..  ....+++|.+.....   .+.. .     ++ .++.+.||.+..++|.++|.
T Consensus        82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~---~~~~-~-----~D-~ii~V~a~~e~r~~Rl~~R~  147 (195)
T PRK14730         82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEA---KLTD-L-----CS-EIWVVDCSPEQQLQRLIKRD  147 (195)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCc---chHh-C-----CC-EEEEEECCHHHHHHHHHHcC
Confidence            1111111111 11222233321  245788888877643   2333 2     22 24567899999999998885

>KOG4238|consensus

Probab=99.13  E-value=3.1e-10  Score=83.68  Aligned_cols=121  Identities=18%  Similarity=0.170  Sum_probs=91.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      .+.|+++|++|+||||++-.|.++|.+.|+.+..+..|+++...-..    -.|+++..+. .      .+.+.++.+.+
T Consensus        50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~kn----lgfs~edree-n------irriaevaklf  118 (627)
T KOG4238|consen   50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKN----LGFSPEDREE-N------IRRIAEVAKLF  118 (627)
T ss_pred             ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhc----cCCCchhHHH-H------HHHHHHHHHHH
Confidence            46799999999999999999999999999999999999988764321    1254432221 1      22355566666


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                      .+.|-+.|........+.|..-.+ +-+..+.+++-|.+.+|.+.|.+|+.+.
T Consensus       119 adaglvcitsfispf~~dr~~ark-ihe~~~l~f~ev~v~a~l~vceqrd~k~  170 (627)
T KOG4238|consen  119 ADAGLVCITSFISPFAKDRENARK-IHESAGLPFFEVFVDAPLNVCEQRDVKG  170 (627)
T ss_pred             hcCCceeeehhcChhhhhhhhhhh-hhcccCCceEEEEecCchhhhhhcChHH
Confidence            777866666666666677777666 7677789998899999999999998775

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.13  E-value=3.1e-10  Score=77.70  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=29.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +|.++|.|||||||+|+.|++.++    .+.+++.|++..
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~~   36 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFK   36 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccccC
Confidence            588999999999999999999873    245677776643

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=99.10  E-value=1.8e-10  Score=77.68  Aligned_cols=34  Identities=24%  Similarity=0.281  Sum_probs=28.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ..|+++|+|||||||+|+.|++.+++.+++.|.+
T Consensus         3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~   36 (171)
T PRK03731          3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW   36 (171)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence            4688899999999999999999998766544433

>PRK14737 gmk guanylate kinase; Provisional

Probab=99.10  E-value=3.1e-09  Score=72.83  Aligned_cols=28  Identities=14%  Similarity=0.258  Sum_probs=24.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .++.+|+|+||||||||||++.|.+.+.
T Consensus         2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~   29 (186)
T PRK14737          2 ASPKLFIISSVAGGGKSTIIQALLEEHP   29 (186)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3578999999999999999999988753

>TIGR00235 udk uridine kinase

Probab=99.10  E-value=1.2e-09  Score=76.00  Aligned_cols=43  Identities=21%  Similarity=0.300  Sum_probs=34.2

Q ss_pred             CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      |-+++..+|.++|++||||||+++.|+..++.  ..+.+++.|++
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~   43 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY   43 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence            34566789999999999999999999988764  34556677765

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=99.10  E-value=2e-09  Score=71.19  Aligned_cols=110  Identities=21%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc--cccC-chhhhhHHHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI--FRVD-NTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      ++|.+.|+|||||||+|+.|++.++..++     +.+.+.+.+-... +.++  |+.. .+++ .     ....++....
T Consensus         1 m~ItIsG~pGsG~TTva~~lAe~~gl~~v-----saG~iFR~~A~e~-gmsl~ef~~~AE~~p-~-----iD~~iD~rq~   68 (179)
T COG1102           1 MVITISGLPGSGKTTVARELAEHLGLKLV-----SAGTIFREMARER-GMSLEEFSRYAEEDP-E-----IDKEIDRRQK   68 (179)
T ss_pred             CEEEeccCCCCChhHHHHHHHHHhCCcee-----eccHHHHHHHHHc-CCCHHHHHHHHhcCc-h-----hhHHHHHHHH
Confidence            47899999999999999999999987655     5555444432211 2221  1110 0000 0     0111222222


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+...+ ++|+++      +...|..   +  ....+-|++.+|.++-.+|..+|-.
T Consensus        69 e~a~~~-nvVleg------rLA~Wi~---k--~~adlkI~L~Apl~vRa~Ria~REg  113 (179)
T COG1102          69 ELAKEG-NVVLEG------RLAGWIV---R--EYADLKIWLKAPLEVRAERIAKREG  113 (179)
T ss_pred             HHHHcC-CeEEhh------hhHHHHh---c--cccceEEEEeCcHHHHHHHHHHhcC
Confidence            222234 455543      3344543   2  3455668889999999888887743

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=99.10  E-value=1.1e-09  Score=83.18  Aligned_cols=96  Identities=16%  Similarity=0.262  Sum_probs=62.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccC-chhhhhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVD-NTEGYNIRQLSAREA   77 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~   77 (143)
                      +|.+|+|+|++||||||.+..|+.++...+.++.+++.|.++.....      ...+.+++... ..+...    +    
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~----i----  170 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVK----I----  170 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHH----H----
Confidence            47899999999999999999999999888889999999998865432      12234444321 111111    1    


Q ss_pred             HHHHHHHH-hcCCeEEEEeCCchhHHHHHHHH
Q psy2713          78 QEDATKWL-KNDGEVAIIDGTTATMEKRKQIH  108 (143)
Q Consensus        78 ~~~~~~~l-~~~~~~vi~d~~~~~~~~r~~~~  108 (143)
                      ..+.++.+ ......+|+|+..........+.
T Consensus       171 ~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~  202 (429)
T TIGR01425       171 ASEGVEKFKKENFDIIIVDTSGRHKQEDSLFE  202 (429)
T ss_pred             HHHHHHHHHhCCCCEEEEECCCCCcchHHHHH
Confidence            11122233 23567899999976654333333

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=99.09  E-value=7.7e-10  Score=81.40  Aligned_cols=33  Identities=27%  Similarity=0.278  Sum_probs=28.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      .++..|+++|+|||||||+++.|++.+++.+++
T Consensus       131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id  163 (309)
T PRK08154        131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE  163 (309)
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence            345789999999999999999999999876653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=99.09  E-value=2.2e-09  Score=72.87  Aligned_cols=26  Identities=23%  Similarity=0.232  Sum_probs=23.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+++++|+|||||||+++.|+..++.
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~   27 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAG   27 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence            47899999999999999999988754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK13975 thymidylate kinase; Provisional

Probab=99.08  E-value=3.4e-09  Score=72.86  Aligned_cols=27  Identities=26%  Similarity=0.314  Sum_probs=25.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +.+|++.|++||||||+++.|+++++.
T Consensus         2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          2 NKFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            479999999999999999999999974

>PRK05439 pantothenate kinase; Provisional

Probab=99.07  E-value=1.9e-09  Score=79.05  Aligned_cols=44  Identities=20%  Similarity=0.346  Sum_probs=37.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~~   47 (143)
                      ..|.+|.++|+|||||||+|+.|+..+..  .+.++.+++.|+|..
T Consensus        84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~  129 (311)
T PRK05439         84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY  129 (311)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence            45789999999999999999999998864  356788999998753

>PRK04182 cytidylate kinase; Provisional

Probab=99.06  E-value=7.1e-10  Score=75.04  Aligned_cols=30  Identities=27%  Similarity=0.476  Sum_probs=26.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      ++|+++|+|||||||+|+.|++.++...++
T Consensus         1 ~~I~i~G~~GsGKstia~~la~~lg~~~id   30 (180)
T PRK04182          1 MIITISGPPGSGKTTVARLLAEKLGLKHVS   30 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence            379999999999999999999998765543

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=99.06  E-value=1.4e-09  Score=75.39  Aligned_cols=130  Identities=13%  Similarity=0.119  Sum_probs=69.4

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh----hhhhcCCCCccccCchhhhhHHHH------
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK----HLELYNSHDIFRVDNTEGYNIRQL------   72 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------   72 (143)
                      ...|+.|.++|.+||||||+++.|++.++...+++|.+..+-+...    ......+.++++...-+...+...      
T Consensus         3 ~~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~   82 (204)
T PRK14733          3 FINTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE   82 (204)
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence            3457899999999999999999999887766666665544433221    011112233332111111111111      


Q ss_pred             -------HHHH-HHHHHHHHHhc-CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          73 -------SARE-AQEDATKWLKN-DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        73 -------~~~~-~~~~~~~~l~~-~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                             +... ....+.+.+.. ....+++|.+-..+.... +.. .     ++. ++.+.||.+.-++|-++|..
T Consensus        83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~-~~~-~-----~D~-vi~V~a~~e~ri~Rl~~Rd~  151 (204)
T PRK14733         83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFR-HYD-Y-----LKK-VIVIKADLETRIRRLMERDG  151 (204)
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCc-hhh-h-----CCE-EEEEECCHHHHHHHHHHcCC
Confidence                   1111 11222233322 235788888776543110 111 1     222 46678999999999988854

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=99.03  E-value=2.6e-10  Score=78.59  Aligned_cols=119  Identities=15%  Similarity=0.175  Sum_probs=64.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh----------hcCCCCccccCch-hhhhHH----
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE----------LYNSHDIFRVDNT-EGYNIR----   70 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~----   70 (143)
                      +.+|.++|++||||||+++.|++ ++...     +++|.+.+..+.          ...+.+.+..++. +...+.    
T Consensus         2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~-----i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf   75 (194)
T PRK00081          2 MLIIGLTGGIGSGKSTVANLFAE-LGAPV-----IDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVF   75 (194)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH-cCCEE-----EEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHh
Confidence            36899999999999999999988 66544     445544333221          0112222321110 111111    


Q ss_pred             ---------HHHHHH-HHHHHHHHHhcC--CeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          71 ---------QLSARE-AQEDATKWLKND--GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        71 ---------~~~~~~-~~~~~~~~l~~~--~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                               +.+..- ....+.+.+...  ...+|+|.+.....   .+.. .     ++ .++.+.||.++..+|-.+|
T Consensus        76 ~~~~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~---~~~~-~-----~D-~vi~V~a~~e~~~~Rl~~R  145 (194)
T PRK00081         76 SDPEARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFEN---GLEK-L-----VD-RVLVVDAPPETQLERLMAR  145 (194)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcC---Cchh-h-----CC-eEEEEECCHHHHHHHHHHc
Confidence                     111111 112222333221  25788998877653   2333 2     22 3566789999999998887


Q ss_pred             hc
Q psy2713         139 SM  140 (143)
Q Consensus       139 ~~  140 (143)
                      ..
T Consensus       146 ~~  147 (194)
T PRK00081        146 DG  147 (194)
T ss_pred             CC
Confidence            53

>KOG4622|consensus

Probab=99.03  E-value=3.1e-09  Score=72.46  Aligned_cols=121  Identities=17%  Similarity=0.203  Sum_probs=77.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH---HccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHH---HHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY---LTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQL---SAREAQED   80 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~---l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   80 (143)
                      .++.+.|+|++||||+++.|.-.   +...++  .-.+-|+++...-.   ..+.      .....+..   ....++..
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi--~hlcfDDFlmdaTp---SaD~------a~keqRgr~~~~iEk~ISa   70 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHI--EHLCFDDFLMDATP---SADK------AAKEQRGRFECHIEKCISA   70 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHH--HhhhHHHHhhhcCc---chhh------hHHHHhchHHHHHHHHHHH
Confidence            47899999999999999998732   222222  22344555432111   0000      00000111   11222221


Q ss_pred             HH----------H-----HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          81 AT----------K-----WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        81 ~~----------~-----~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .-          .     -.+++...+++|..++.+++|-.+++ +++.+|+.+-.|++-....+++++|.+|.
T Consensus        71 iqedtdwppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~k-i~kd~GciFG~Iflas~ide~LqaNS~Rs  143 (291)
T KOG4622|consen   71 IQEDTDWPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQK-IAKDHGCIFGIIFLASGIDEALQANSHRS  143 (291)
T ss_pred             HhcccCCCchheeccccCCcCCCceEEEechHHHHHHhhhHHHH-HHHHcCCeeeeeehhhhHHHHHHhccccc
Confidence            11          0     01344567889999999999999999 99999999988999999999999999885

>PLN02924 thymidylate kinase

Probab=99.03  E-value=1.3e-08  Score=71.52  Aligned_cols=121  Identities=15%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh----h---hhhhhhhcCCCCccccCchhhhhHHHHHHHH-
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA----Y---RRKHLELYNSHDIFRVDNTEGYNIRQLSARE-   76 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   76 (143)
                      +..+|+|.|.+||||||+++.|++++...++++..+....    +   .+.....  ... .+   .....  ...+.. 
T Consensus        15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~--~~~-~~---~~~~~--llf~adR   86 (220)
T PLN02924         15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSN--KSQ-LD---DRAIH--LLFSANR   86 (220)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhC--CCC-CC---HHHHH--HHHHHHH
Confidence            4579999999999999999999999998888776554321    1   1111110  000 11   11110  001111 


Q ss_pred             --HHHHHHHHHhcCCeEEEEeCCchhHH--------HHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713          77 --AQEDATKWLKNDGEVAIIDGTTATME--------KRKQIHDYFARKMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        77 --~~~~~~~~l~~~~~~vi~d~~~~~~~--------~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                        ....+...+ ..|.+||.|-.....-        ..+++.. +......+-+++.+.+|.+++++|.
T Consensus        87 ~~~~~~I~pal-~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~-~~~~~~~PDlvi~Ld~~~~~a~~R~  153 (220)
T PLN02924         87 WEKRSLMERKL-KSGTTLVVDRYSYSGVAFSAAKGLDLEWCKA-PEVGLPAPDLVLYLDISPEEAAERG  153 (220)
T ss_pred             HHHHHHHHHHH-HCCCEEEEccchhHHHHHHHhcCCCHHHHHH-HHhCCCCCCEEEEEeCCHHHHHHHh
Confidence              112222233 3578899987654221        1122332 3322334667888899999999884

>PRK10867 signal recognition particle protein; Provisional

Probab=99.03  E-value=2.3e-09  Score=81.80  Aligned_cols=89  Identities=25%  Similarity=0.332  Sum_probs=59.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhhhhhhhh------hhcCCCCccccC-chhhhhHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSAYRRKHL------ELYNSHDIFRVD-NTEGYNIRQLSAR   75 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~   75 (143)
                      .+|.+|+++|++||||||++..|+.++... +.++.+++.|.++....      ....+.+++... ..+..        
T Consensus        98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~--------  169 (433)
T PRK10867         98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPV--------  169 (433)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHH--------
Confidence            457899999999999999999999988777 88999999999887643      223345555321 11111        


Q ss_pred             HHHHHHHHHH-hcCCeEEEEeCCchh
Q psy2713          76 EAQEDATKWL-KNDGEVAIIDGTTAT  100 (143)
Q Consensus        76 ~~~~~~~~~l-~~~~~~vi~d~~~~~  100 (143)
                      ....++.+.. ......+|+|+....
T Consensus       170 ~i~~~a~~~a~~~~~DvVIIDTaGrl  195 (433)
T PRK10867        170 DIAKAALEEAKENGYDVVIVDTAGRL  195 (433)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence            1112233333 234568999998754

>PLN02199 shikimate kinase

Probab=99.02  E-value=2.8e-09  Score=77.28  Aligned_cols=113  Identities=15%  Similarity=0.170  Sum_probs=61.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      ...|+|+|++||||||+++.|++.+++..+++|.+     .+.........++|...+.+.+...+   .+.+.    .+
T Consensus       102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~l-----Ie~~~~G~sI~eIf~~~GE~~FR~~E---~e~L~----~L  169 (303)
T PLN02199        102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL-----IEQAMNGTSVAEIFVHHGENFFRGKE---TDALK----KL  169 (303)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHH-----HHHHhcCCCHHHHHHHhCHHHHHHHH---HHHHH----HH
Confidence            45799999999999999999999998776655543     33321111122334433333222111   12222    22


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      .... .+|+.+-.......+.| . +++ .|   ++|++.+|.+++.+|...
T Consensus       170 ~~~~-~~VIStGGG~V~~~~n~-~-~L~-~G---~vV~Ldas~E~l~~RL~~  214 (303)
T PLN02199        170 SSRY-QVVVSTGGGAVIRPINW-K-YMH-KG---ISIWLDVPLEALAHRIAA  214 (303)
T ss_pred             HhcC-CEEEECCCcccCCHHHH-H-HHh-CC---eEEEEECCHHHHHHHHhh
Confidence            2222 34444433222222222 2 333 23   357788999999998764

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=99.01  E-value=2e-09  Score=73.30  Aligned_cols=32  Identities=22%  Similarity=0.279  Sum_probs=24.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      +|.++|.|||||||+++.|++ ++...+++|.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~   32 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI   32 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence            489999999999999999998 55544433333

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=99.01  E-value=2.2e-09  Score=72.13  Aligned_cols=110  Identities=16%  Similarity=0.164  Sum_probs=59.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc--cc-cCchhhhhHHHHHHHHHHHH-HH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI--FR-VDNTEGYNIRQLSAREAQED-AT   82 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~   82 (143)
                      ++|+++|.|||||||+|+.|++.++...     ++.|++........ +.+.  +. ...... .+     ...+.. +.
T Consensus         1 ~iI~i~G~~GSGKstia~~la~~lg~~~-----~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~-----~~~~~~~i~   68 (171)
T TIGR02173         1 MIITISGPPGSGKTTVAKILAEKLSLKL-----ISAGDIFRELAAKM-GLDLIEFLNYAEENP-EI-----DKKIDRRIH   68 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHcCCce-----ecHHHHHHHHHHHc-CCCHHHHHHHHhcCc-HH-----HHHHHHHHH
Confidence            3799999999999999999999987554     45544333322110 1111  00 000000 00     111222 12


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +.... +..+|+|+.....         .++. ... +.|.+.||.+...+|..+|..
T Consensus        69 ~~~~~-~~~~Vi~g~~~~~---------~~~~-~~d-~~v~v~a~~~~r~~R~~~R~~  114 (171)
T TIGR02173        69 EIALK-EKNVVLESRLAGW---------IVRE-YAD-VKIWLKAPLEVRARRIAKREG  114 (171)
T ss_pred             HHHhc-CCCEEEEecccce---------eecC-CcC-EEEEEECCHHHHHHHHHHccC
Confidence            22223 3467778765421         1111 122 457788999999999888753

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=99.01  E-value=1.2e-08  Score=67.30  Aligned_cols=130  Identities=17%  Similarity=0.108  Sum_probs=77.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-CCCcccc------CchhhhhHH-HHH---
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-SHDIFRV------DNTEGYNIR-QLS---   73 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~------~~~~~~~~~-~~~---   73 (143)
                      +..+|++.|.|.||||++|..+......+..+   +..|.|.+....... ....|..      ++.+..-+. ..+   
T Consensus        22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmh---igiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~   98 (205)
T COG3896          22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMH---IGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL   98 (205)
T ss_pred             CceEEEecCCCccchhHHHHHHHHHhhcchhh---hhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence            45799999999999999999999876433221   133444444322111 1111221      111111110 011   


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          74 AREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        74 ~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +......++....+.|.++|.|+..-+++..-.-.. .+.  ++++.+|-+.||+|+..+|...|.-
T Consensus        99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r-~l~--g~~v~~VGV~~p~E~~~~Re~rr~d  162 (205)
T COG3896          99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLR-VLE--GCRVWMVGVHVPDEEGARRELRRGD  162 (205)
T ss_pred             HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHH-HHh--CCceEEEEeeccHHHHHHHHhhcCC
Confidence            112223344444566889999998776554444444 443  7999999999999999999887653

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.01  E-value=2.9e-09  Score=74.77  Aligned_cols=39  Identities=18%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYR   46 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~   46 (143)
                      +|.+.|++||||||+|+.|+..+..  .+.++.+++.|++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~   41 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL   41 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence            5789999999999999999998863  34567788888774

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=99.01  E-value=1.4e-08  Score=73.93  Aligned_cols=97  Identities=18%  Similarity=0.204  Sum_probs=59.2

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      +++..+|+++|++||||||+++.|... +.       ...|+.                   ..         ..+.++.
T Consensus         3 ~~~~~~i~i~G~~GsGKtt~~~~l~~~-g~-------~~~d~~-------------------~~---------~L~~~l~   46 (288)
T PRK05416          3 AAPMRLVIVTGLSGAGKSVALRALEDL-GY-------YCVDNL-------------------PP---------SLLPKLV   46 (288)
T ss_pred             CCCceEEEEECCCCCcHHHHHHHHHHc-CC-------eEECCc-------------------CH---------HHHHHHH
Confidence            344579999999999999999999522 21       111111                   00         0011222


Q ss_pred             HHHh----cCCeEEEEeCCchh--HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          83 KWLK----NDGEVAIIDGTTAT--MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        83 ~~l~----~~~~~vi~d~~~~~--~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      +.+.    .....+++|..+..  .+.++.+.  .++..+..+.+|++.++.+++.+|-..
T Consensus        47 ~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~--~L~~~g~~~~iI~L~a~~e~L~~Rl~~  105 (288)
T PRK05416         47 ELLAQSGGIRKVAVVIDVRSRPFFDDLPEALD--ELRERGIDVRVLFLDASDEVLIRRYSE  105 (288)
T ss_pred             HHHHhcCCCCCeEEEEccCchhhHHHHHHHHH--HHHHcCCcEEEEEEECCHHHHHHHHhh
Confidence            2221    12446788887542  23444444  444458888889999999999999654

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.99  E-value=3.7e-09  Score=80.86  Aligned_cols=90  Identities=24%  Similarity=0.353  Sum_probs=60.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccC-chhhhhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVD-NTEGYNIRQLSARE   76 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~   76 (143)
                      .+|.+|+|+|++||||||++..|+.++...+.++.++..|.++.....      ...+.+++... ..+.        ..
T Consensus        93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~--------~~  164 (437)
T PRK00771         93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDA--------VE  164 (437)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCH--------HH
Confidence            358899999999999999999999999888889999999988775322      22234444321 1111        11


Q ss_pred             HHHHHHHHHhcCCeEEEEeCCchhHH
Q psy2713          77 AQEDATKWLKNDGEVAIIDGTTATME  102 (143)
Q Consensus        77 ~~~~~~~~l~~~~~~vi~d~~~~~~~  102 (143)
                      .+.++++.+.. ...+|+|+......
T Consensus       165 i~~~al~~~~~-~DvVIIDTAGr~~~  189 (437)
T PRK00771        165 IAKEGLEKFKK-ADVIIVDTAGRHAL  189 (437)
T ss_pred             HHHHHHHHhhc-CCEEEEECCCcccc
Confidence            12333334433 37899999975553

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.99  E-value=1.5e-08  Score=70.14  Aligned_cols=27  Identities=26%  Similarity=0.335  Sum_probs=24.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..+|+++|+|||||||+++.|+..++
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            457999999999999999999998864

>TIGR00152 dephospho-CoA kinase

Probab=98.99  E-value=1.8e-09  Score=73.99  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=26.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      +|.++|.+||||||+++.|++..+...+++|.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~   33 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI   33 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence            488999999999999999998855554444444

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PLN02842 nucleotide kinase

Probab=98.97  E-value=9.3e-10  Score=84.95  Aligned_cols=118  Identities=11%  Similarity=0.144  Sum_probs=62.0

Q ss_pred             EEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713          10 ALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus        10 ~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      ++.|+|||||||+|+.|+++++..+++     .++..+.......     ..++.+..    ...........+.+.++.
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs-----~gdLLR~ev~~~T~iG~~Ire~l~~G----~lvPdeiv~~ll~drl~~   71 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHIS-----TGDLLRAEVSAGTDIGKRAKEFMNSG----RLVPDEIVIAMVTGRLSR   71 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEE-----ccHHHHHHhccCCHHHHHHHHHHhCC----CCCcHHHHHHHHHHHHhC
Confidence            478999999999999999999766553     3333222111000     00001000    000111111111111111


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .......+|+|+.+.+..+.+.+.+ .   ...+-++|.+.||++.+++|-..|..
T Consensus        72 ~~~~~~G~ILDGfPRt~~Qa~~Le~-~---~~~PDlVI~LDvpdevlleRl~gR~~  123 (505)
T PLN02842         72 EDAKEKGWLLDGYPRSFAQAQSLEK-L---KIRPDIFILLDVPDEILIDRCVGRRL  123 (505)
T ss_pred             ccccCCcEEEeCCCCcHHHHHHHHh-c---CCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            1111234888998877655443333 1   12344678889999999999777753

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.97  E-value=1.9e-09  Score=70.59  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=29.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      +|+++|+|||||||+|+.|++.++..+++.+.+.
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~   34 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIR   34 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCC
Confidence            5899999999999999999999988777666443

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=98.97  E-value=1.4e-08  Score=71.70  Aligned_cols=43  Identities=21%  Similarity=0.363  Sum_probs=34.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCcee-Eehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV-FSVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~-~~~d~~~   46 (143)
                      .++.+|.+.|++||||||+++.|+..+...+....+ ++.|++.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~   74 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH   74 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence            467899999999999999999999998766555555 6666643

>PLN02348 phosphoribulokinase

Probab=98.96  E-value=9.7e-09  Score=77.09  Aligned_cols=43  Identities=16%  Similarity=0.288  Sum_probs=35.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCC---------------CCceeEehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTD---------------HKSKVFSVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~---------------~~~~~~~~d~~~   46 (143)
                      ..|.+|.+.|.|||||||+|+.|+..|+..+               ..+.+++.|+|.
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh  104 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH  104 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence            4578999999999999999999999997532               345688999874

>TIGR00959 ffh signal recognition particle protein

Probab=98.95  E-value=2.9e-08  Score=75.82  Aligned_cols=89  Identities=26%  Similarity=0.355  Sum_probs=58.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhh------hcCCCCccccCc-hhhhhHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVDN-TEGYNIRQLSAR   75 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~   75 (143)
                      .+|.+++++|++||||||++..|+.++. ..+.++.+++.|.+|.....      ...+.+++.... ....        
T Consensus        97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~--------  168 (428)
T TIGR00959        97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPV--------  168 (428)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHH--------
Confidence            3578999999999999999999999875 46888999999988775321      223445443221 1111        


Q ss_pred             HHHHHHHHHH-hcCCeEEEEeCCchh
Q psy2713          76 EAQEDATKWL-KNDGEVAIIDGTTAT  100 (143)
Q Consensus        76 ~~~~~~~~~l-~~~~~~vi~d~~~~~  100 (143)
                      ....++.+.+ ......+|+|+....
T Consensus       169 ~i~~~al~~~~~~~~DvVIIDTaGr~  194 (428)
T TIGR00959       169 EIARRALEYAKENGFDVVIVDTAGRL  194 (428)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence            1122333333 334568999998754

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.92  E-value=4.4e-08  Score=68.13  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=23.8

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.++.+|+++|+|||||||+++.|.+.
T Consensus        10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         10 PAKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            456789999999999999999999764

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.92  E-value=3.2e-08  Score=67.12  Aligned_cols=26  Identities=23%  Similarity=0.280  Sum_probs=23.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+|+|+|++||||||+++.|++.++.
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~   27 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPN   27 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCcc
Confidence            58999999999999999999987644

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.91  E-value=2.8e-08  Score=65.68  Aligned_cols=119  Identities=16%  Similarity=0.094  Sum_probs=75.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      +|.+.++.|+.||||||+...+.-.+.-   ...+++.|..-...          ++.++....  -..++.+.. ....
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~~---~~~~VN~D~iA~~i----------~p~~p~~~~--i~A~r~ai~-~i~~   64 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLLP---GIVFVNADEIAAQI----------SPDNPTSAA--IQAARVAID-RIAR   64 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhcC---CeEEECHHHHhhhc----------CCCCchHHH--HHHHHHHHH-HHHH
Confidence            4678999999999999998776544421   23556777654332          111111111  111222222 2233


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHH-HHHHhhhhhcc
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEE-ILEHNIKQSMC  141 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~r~~~r~~~  141 (143)
                      +-+.+..+..+++.+.++.++.+.  .++..||-+.+.++..+..+ -.+|-.+|...
T Consensus        65 ~I~~~~~F~~ETtLS~~s~~~~ik--~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~  120 (187)
T COG4185          65 LIDLGRPFIAETTLSGPSILELIK--TAKAAGFYIVLNYIVIDSVELAVERVKLRVAK  120 (187)
T ss_pred             HHHcCCCcceEEeeccchHHHHHH--HHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhc
Confidence            334578899999999998777666  68888999988888888775 45666666543

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=98.90  E-value=7.5e-09  Score=71.38  Aligned_cols=38  Identities=24%  Similarity=0.439  Sum_probs=31.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +|.++|++||||||+++.|+..+  .+..+.+++.|++..
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~   38 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK   38 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence            58899999999999999999987  344567888887653

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PRK13974 thymidylate kinase; Provisional

Probab=98.90  E-value=9.5e-08  Score=66.73  Aligned_cols=30  Identities=27%  Similarity=0.391  Sum_probs=26.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ...+|+|.|++||||||+++.|++++...+
T Consensus         2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g   31 (212)
T PRK13974          2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSG   31 (212)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            457999999999999999999999987554

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.90  E-value=1.6e-09  Score=72.36  Aligned_cols=104  Identities=16%  Similarity=0.169  Sum_probs=53.6

Q ss_pred             CCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhcCCeEEEE
Q psy2713          15 PARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAII   94 (143)
Q Consensus        15 pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~   94 (143)
                      |||||||+++.||+.|++.++|.     |.+.....+. ...++|...+.+.+...+      ...+.+.+...  ..|+
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~-----D~~i~~~~g~-si~~i~~~~G~~~fr~~E------~~~l~~l~~~~--~~VI   66 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDL-----DDEIEERTGM-SISEIFAEEGEEAFRELE------SEALRELLKEN--NCVI   66 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEH-----HHHHHHHHTS-HHHHHHHHHHHHHHHHHH------HHHHHHHHCSS--SEEE
T ss_pred             CCCcHHHHHHHHHHHhCCCcccc-----CHHHHHHhCC-cHHHHHHcCChHHHHHHH------HHHHHHHhccC--cEEE
Confidence            79999999999999999876644     4443332220 112333322222221111      11122222322  4444


Q ss_pred             eC---CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          95 DG---TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        95 d~---~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+   +...++.++.+.+     . ..  +|++.++.+++.+|...+..
T Consensus        67 a~GGG~~~~~~~~~~L~~-----~-g~--vI~L~~~~~~l~~Rl~~~~~  107 (158)
T PF01202_consen   67 ACGGGIVLKEENRELLKE-----N-GL--VIYLDADPEELAERLRARDN  107 (158)
T ss_dssp             EE-TTGGGSHHHHHHHHH-----H-SE--EEEEE--HHHHHHHHHHHCT
T ss_pred             eCCCCCcCcHHHHHHHHh-----C-CE--EEEEeCCHHHHHHHHhCCCC
Confidence            44   4555555554443     2 32  45667899999998766543

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.90  E-value=2.4e-08  Score=72.27  Aligned_cols=45  Identities=24%  Similarity=0.296  Sum_probs=39.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .++.+|+++|++|+||||.+..|+..+...+.++.++..|.++..
T Consensus        70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~  114 (272)
T TIGR00064        70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAA  114 (272)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHH
Confidence            346899999999999999999999998877888889998876554

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.88  E-value=2.1e-08  Score=74.01  Aligned_cols=43  Identities=26%  Similarity=0.363  Sum_probs=38.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ++.+|+++|++||||||++..|+..+...+.++.++..|.++.
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~  155 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA  155 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence            5789999999999999999999999887778888888887664

>PRK14974 cell division protein FtsY; Provisional

Probab=98.88  E-value=7e-08  Score=71.66  Aligned_cols=45  Identities=27%  Similarity=0.434  Sum_probs=38.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~   49 (143)
                      +|.+|+|+|+|||||||.+..|+..+...+.++.++..|.+|...
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a  183 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGA  183 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHH
Confidence            478999999999999999999999887777888888888776543

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.88  E-value=6.9e-08  Score=66.25  Aligned_cols=25  Identities=32%  Similarity=0.497  Sum_probs=22.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +|++.|++||||||+++.|+++++.
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~   25 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGY   25 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCC
Confidence            5899999999999999999998653

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.86  E-value=1.3e-09  Score=84.55  Aligned_cols=108  Identities=18%  Similarity=0.248  Sum_probs=58.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN   87 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   87 (143)
                      .|+++|+|||||||+++.|++.+++.++     +.|.+.....+ ....++|...+++.+.   ....+.+.++.   . 
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~i-----d~D~~i~~~~g-~~i~~i~~~~Ge~~fr---~~E~~~l~~l~---~-   68 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFI-----DMDEEIERREG-RSVRRIFEEDGEEYFR---LKEKELLRELV---E-   68 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEE-----ECcHHHHHHcC-CCHHHHHHHhhhHHHH---HHHHHHHHHHh---h-
Confidence            5899999999999999999999877655     44544444221 0112223322222221   11122333322   1 


Q ss_pred             CCeEEEEeCC---chhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          88 DGEVAIIDGT---TATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        88 ~~~~vi~d~~---~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                      ... .|+.+-   ..+.+.|+.+.     + +   .+|++.+|.+++.+|-..+
T Consensus        69 ~~~-~Vis~Gggvv~~~~~r~~l~-----~-~---~vI~L~as~e~l~~Rl~~~  112 (488)
T PRK13951         69 RDN-VVVATGGGVVIDPENRELLK-----K-E---KTLFLYAPPEVLMERVTTE  112 (488)
T ss_pred             cCC-EEEECCCccccChHHHHHHh-----c-C---eEEEEECCHHHHHHHhccC
Confidence            122 333332   12334444332     2 1   2577889999999887543

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=98.86  E-value=4.5e-08  Score=69.13  Aligned_cols=127  Identities=24%  Similarity=0.251  Sum_probs=67.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh---hhhc----------CCCCccccCchhhhhHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH---LELY----------NSHDIFRVDNTEGYNIR   70 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~   70 (143)
                      +.|.+|++.|.||+||||+|..||.+|+-.    .+++.|..|+.+   +.+.          ..+..+.....+...+.
T Consensus        87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~----~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia  162 (299)
T COG2074          87 KRPLIILIGGASGVGKSTIAGELARRLGIR----SVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA  162 (299)
T ss_pred             CCCeEEEecCCCCCChhHHHHHHHHHcCCc----eeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhh
Confidence            348999999999999999999999998753    345666655543   1110          00111111111110111


Q ss_pred             H-----HHHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHH-HHhhhhhc
Q psy2713          71 Q-----LSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEIL-EHNIKQSM  140 (143)
Q Consensus        71 ~-----~~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~r~~~r~~  140 (143)
                      .     ......++.+++..-..|..+|+.+.-.-+..-+.    ...  +..+....+.+++++++ .|-..|.+
T Consensus       163 GF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~----~~~--~~n~~~~~l~i~dee~Hr~RF~~R~~  232 (299)
T COG2074         163 GFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKE----EAL--GNNVFMFMLYIADEELHRERFYDRIR  232 (299)
T ss_pred             hHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccH----hhh--ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence            1     11223455555555445889999998776653221    211  12222333445666654 45555543

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=98.85  E-value=2.2e-07  Score=62.72  Aligned_cols=42  Identities=38%  Similarity=0.506  Sum_probs=36.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ++++++|+|||||||++..++..+...+.++.+++.|.++..
T Consensus         1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~   42 (173)
T cd03115           1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA   42 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH
Confidence            478999999999999999999988777888888888876544

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.85  E-value=1.2e-07  Score=62.99  Aligned_cols=78  Identities=21%  Similarity=0.273  Sum_probs=53.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH-
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL-   85 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-   85 (143)
                      +|+=++.+||||||+|.+|++.++ |.++..|-+..                  .  ..         .+.+..+++.| 
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~------------------k--~~---------~~f~~~~l~~L~   51 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNITG------------------K--RK---------PKFIKAVLELLA   51 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCC------------------C--CH---------HHHHHHHHHHHh
Confidence            355678999999999999999998 77664443311                  0  00         11123333444 


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhhc
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARKM  115 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~  115 (143)
                      .....+||.|=.|.....|+++.+ .++..
T Consensus        52 ~~~~~vViaDRNNh~~reR~ql~~-~~~~~   80 (168)
T PF08303_consen   52 KDTHPVVIADRNNHQKRERKQLFE-DVSQL   80 (168)
T ss_pred             hCCCCEEEEeCCCchHHHHHHHHH-HHHHh
Confidence            344678999999999999999888 77764

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=98.84  E-value=1.3e-08  Score=70.87  Aligned_cols=33  Identities=18%  Similarity=0.319  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      .+.+|.++|.+||||||+++.|.. ++...+++|
T Consensus         4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D   36 (208)
T PRK14731          4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD   36 (208)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence            457899999999999999999986 454434443

>PLN02422 dephospho-CoA kinase

Probab=98.83  E-value=2.4e-08  Score=70.47  Aligned_cols=118  Identities=18%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh----------cCCCCccccCch-hhhhHHHH---
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL----------YNSHDIFRVDNT-EGYNIRQL---   72 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~---   72 (143)
                      .+|.++|.+||||||+++.|++ ++...     ++.|...+..+.+          ..+.++++.++. +...++..   
T Consensus         2 ~~igltG~igsGKstv~~~l~~-~g~~~-----idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~   75 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFKS-SGIPV-----VDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFS   75 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeE-----EehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhC
Confidence            3799999999999999999984 45544     4555544333221          112333322211 11111111   


Q ss_pred             ----------HHHHHH-HHHHHHH----hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          73 ----------SAREAQ-EDATKWL----KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        73 ----------~~~~~~-~~~~~~l----~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                                +....+ ..+....    ..+...+|+|.+-....   .+.. .     ++. ++.+.||.++.++|-++
T Consensus        76 d~~~~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~---~~~~-~-----~D~-vI~V~a~~e~ri~RL~~  145 (232)
T PLN02422         76 DPSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFET---KMDK-W-----TKP-VVVVWVDPETQLERLMA  145 (232)
T ss_pred             CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhc---chhh-h-----CCE-EEEEECCHHHHHHHHHH
Confidence                      110111 1111111    12235788888877543   2332 2     333 46678999999999888


Q ss_pred             hhc
Q psy2713         138 QSM  140 (143)
Q Consensus       138 r~~  140 (143)
                      |..
T Consensus       146 R~g  148 (232)
T PLN02422        146 RDG  148 (232)
T ss_pred             cCC
Confidence            854

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=98.82  E-value=2.9e-08  Score=68.68  Aligned_cols=38  Identities=26%  Similarity=0.414  Sum_probs=29.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ++.+|.++|.+||||||+|+.+++ ++..     ++++|..-+.
T Consensus         1 ~~~iIglTG~igsGKStva~~~~~-~G~~-----vidaD~v~r~   38 (201)
T COG0237           1 MMLIIGLTGGIGSGKSTVAKILAE-LGFP-----VIDADDVARE   38 (201)
T ss_pred             CceEEEEecCCCCCHHHHHHHHHH-cCCe-----EEEccHHHHH
Confidence            357999999999999999999998 6654     4555655443

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=98.81  E-value=1.4e-08  Score=70.07  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=61.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh----------cCCCCccccCch-hhhhHHHH----
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL----------YNSHDIFRVDNT-EGYNIRQL----   72 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~----   72 (143)
                      +|.++|.+||||||+++.|++ ++.     .+++.|..-+..+.+          ..+.++++.++. +...++..    
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~-----~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~   74 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGA-----FGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFND   74 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCC-----EEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCC
Confidence            478999999999999998875 343     445555544333221          112333332221 11111111    


Q ss_pred             ---------HHHHHH-HHHHHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          73 ---------SAREAQ-EDATKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        73 ---------~~~~~~-~~~~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                               +....+ ..+.+.+.  ..+..+|+|.+......   +.. .     ++ .++.+.||.++.++|-.+|..
T Consensus        75 ~~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~---~~~-~-----~D-~vi~V~a~~e~r~~RL~~R~g  144 (196)
T PRK14732         75 EEKLKALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETD---AYT-L-----CD-ATVTVDSDPEESILRTISRDG  144 (196)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcC---chh-h-----CC-EEEEEECCHHHHHHHHHHcCC
Confidence                     111111 11222221  12456778887765532   222 2     22 356678999999999888843

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=98.80  E-value=4.6e-08  Score=71.63  Aligned_cols=90  Identities=20%  Similarity=0.245  Sum_probs=63.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccc-cCchhhhhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFR-VDNTEGYNIRQLSARE   76 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~   76 (143)
                      .+|.+|+|+|..|+||||-..+|+++|...+.++-+...|.+|.....      ...+.++.. ..+.++.        .
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA--------a  208 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA--------A  208 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH--------H
Confidence            468999999999999999999999999999999999999999988654      223444443 2232221        1


Q ss_pred             HHHHHHHHH-hcCCeEEEEeCCchhH
Q psy2713          77 AQEDATKWL-KNDGEVAIIDGTTATM  101 (143)
Q Consensus        77 ~~~~~~~~l-~~~~~~vi~d~~~~~~  101 (143)
                      ...++++.. ..+-.++++|+.....
T Consensus       209 VafDAi~~Akar~~DvvliDTAGRLh  234 (340)
T COG0552         209 VAFDAIQAAKARGIDVVLIDTAGRLH  234 (340)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCccccc
Confidence            233344444 3445677788776544

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.80  E-value=5.2e-08  Score=73.43  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=38.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      +|.+|+|+|++||||||++..|+..+...+.++.++..|.++..
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria  283 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG  283 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH
Confidence            46799999999999999999999988777888899999988744

>PRK07933 thymidylate kinase; Validated

Probab=98.78  E-value=1.1e-07  Score=66.59  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=31.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ++|+|.|+.||||||+++.|+++|...++++......
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P   37 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP   37 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            4799999999999999999999999888776665443

>PRK15453 phosphoribulokinase; Provisional

Probab=98.78  E-value=8.9e-09  Score=74.25  Aligned_cols=43  Identities=14%  Similarity=0.319  Sum_probs=38.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ++.+|+++|.|||||||+|+.|++.++..++.+.+++.|+|.+
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~   46 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR   46 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence            4579999999999999999999999987778888899998765

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.77  E-value=7.1e-08  Score=72.38  Aligned_cols=87  Identities=17%  Similarity=0.215  Sum_probs=57.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccCchhhhhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVDNTEGYNIRQLSAREAQ   78 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
                      .+.+++++|++||||||++..|+..+...+.++.+++.|.++.....      ...+.+++...  +.         ..+
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~--dp---------~dL  273 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT--SP---------AEL  273 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC--CH---------HHH
Confidence            46799999999999999999999888667888999999998764321      11223332211  11         112


Q ss_pred             HHHHHHHh--cCCeEEEEeCCchhHH
Q psy2713          79 EDATKWLK--NDGEVAIIDGTTATME  102 (143)
Q Consensus        79 ~~~~~~l~--~~~~~vi~d~~~~~~~  102 (143)
                      ..+++.+.  .....+++|+....+.
T Consensus       274 ~~al~~l~~~~~~D~VLIDTAGr~~~  299 (407)
T PRK12726        274 EEAVQYMTYVNCVDHILIDTVGRNYL  299 (407)
T ss_pred             HHHHHHHHhcCCCCEEEEECCCCCcc
Confidence            33333332  3357899999987553

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=98.77  E-value=2.4e-07  Score=63.19  Aligned_cols=28  Identities=29%  Similarity=0.355  Sum_probs=24.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ++.+|+|+|++||||||+++.|.+.++.
T Consensus         1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~   28 (183)
T PF00625_consen    1 KRRPIVLVGPSGSGKSTLAKRLIQEFPD   28 (183)
T ss_dssp             SSSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhccc
Confidence            4678999999999999999999988653

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.76  E-value=4.2e-07  Score=69.11  Aligned_cols=45  Identities=24%  Similarity=0.302  Sum_probs=37.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH-ccCCCCceeEehhhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL-TWTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l-~~~~~~~~~~~~d~~~~~~   49 (143)
                      ++.+++++|++||||||++..|+..+ ...+.++.++..|.++...
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA  267 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA  267 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence            46789999999999999999999765 3557778888989877653

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.74  E-value=1.3e-08  Score=70.45  Aligned_cols=31  Identities=26%  Similarity=0.260  Sum_probs=24.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      .+|.++|.+||||||+++.|+. ++...+++|
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D   32 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDAD   32 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCc
Confidence            4799999999999999999986 455444443

>smart00072 GuKc Guanylate kinase homologues

Probab=98.74  E-value=9.6e-08  Score=65.25  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=22.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.+|+++|||||||+|++..|.+.+
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~   26 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEI   26 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcC
Confidence            4689999999999999999999875

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=98.74  E-value=1e-07  Score=74.26  Aligned_cols=36  Identities=14%  Similarity=0.247  Sum_probs=30.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .+.+|.+.|+|||||||+|+.|+++|+..+++++.+
T Consensus       283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~  318 (512)
T PRK13477        283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM  318 (512)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence            457999999999999999999999998666654444

>PLN02165 adenylate isopentenyltransferase

Probab=98.74  E-value=1.6e-07  Score=69.37  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=26.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      +..+|+++|++||||||+|..|++.++...+++
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsa   74 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINS   74 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcCCceecC
Confidence            345899999999999999999999987543333

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.72  E-value=2.2e-08  Score=57.74  Aligned_cols=23  Identities=35%  Similarity=0.600  Sum_probs=21.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +|+++|+|||||||+++.|++.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999997

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=98.72  E-value=4.7e-07  Score=63.57  Aligned_cols=27  Identities=33%  Similarity=0.335  Sum_probs=23.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +|++.|.-||||||+++.|++++...+
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~   27 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGMKY   27 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence            589999999999999999999986543

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=98.71  E-value=6e-07  Score=62.49  Aligned_cols=130  Identities=20%  Similarity=0.105  Sum_probs=72.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh------hhhhhhhcCCCCccccCchhhhhHHHHHHHH-
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY------RRKHLELYNSHDIFRVDNTEGYNIRQLSARE-   76 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   76 (143)
                      |+.++|.+-|+-||||||.++.|++++...++++........      .+....  ++..-++   .....  ...+.. 
T Consensus         1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll--~~~~~~~---~~~e~--lLfaadR   73 (208)
T COG0125           1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLL--NGEEKLS---PKAEA--LLFAADR   73 (208)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHc--CCccCCC---HHHHH--HHHHHHH
Confidence            467899999999999999999999999988886655533322      111110  0000011   11111  111111 


Q ss_pred             --HHHHHHHHHhcCCeEEEEeCCchhHHHHH--------HHHHHHHhhcC---CEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          77 --AQEDATKWLKNDGEVAIIDGTTATMEKRK--------QIHDYFARKMG---FKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        77 --~~~~~~~~l~~~~~~vi~d~~~~~~~~r~--------~~~~~~~~~~~---~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                        .+...+......|.+||.|=.....-...        .|...+-+...   .|-+.+.+.+|.++.++|-.+|..
T Consensus        74 ~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~  150 (208)
T COG0125          74 AQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE  150 (208)
T ss_pred             HHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence              12333333234577888775432211111        12220212222   566788889999999999888864

>PRK07429 phosphoribulokinase; Provisional

Probab=98.70  E-value=4.8e-07  Score=67.09  Aligned_cols=40  Identities=23%  Similarity=0.313  Sum_probs=32.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .++.+|.++|.+||||||+++.|+..++..  ...+++.|++
T Consensus         6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~   45 (327)
T PRK07429          6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDY   45 (327)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEeccc
Confidence            357899999999999999999999888643  2356677765

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.69  E-value=2.1e-07  Score=59.52  Aligned_cols=23  Identities=48%  Similarity=0.758  Sum_probs=21.6

Q ss_pred             EEEEccCCCChhHHHHHHHHHHc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      |++.|+||+||||+++.+++.++
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            68999999999999999999975

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>KOG1533|consensus

Probab=98.69  E-value=2.2e-07  Score=65.12  Aligned_cols=40  Identities=20%  Similarity=0.420  Sum_probs=35.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +...+++|||||||||.+..+.+-+...+-+..+++.|..
T Consensus         2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa   41 (290)
T KOG1533|consen    2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA   41 (290)
T ss_pred             CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCc
Confidence            5567899999999999999999999988998999988853

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=98.68  E-value=8.8e-08  Score=66.05  Aligned_cols=28  Identities=29%  Similarity=0.545  Sum_probs=25.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..+|++.|+=|+||||+|+.|+++++..
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~   31 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFK   31 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence            4689999999999999999999999843

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=98.66  E-value=3.5e-08  Score=70.24  Aligned_cols=34  Identities=18%  Similarity=0.208  Sum_probs=27.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .+|.++|..||||||+++.|.+.++...+++|.+
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~i   35 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLV   35 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHH
Confidence            4799999999999999999998766554544444

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.66  E-value=2.2e-08  Score=71.73  Aligned_cols=40  Identities=18%  Similarity=0.336  Sum_probs=36.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +|.++|.|||||||+++.|.+.++..+.++.+++.|+|.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr   40 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR   40 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence            5889999999999999999999988888889999998866

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=98.64  E-value=4e-08  Score=66.94  Aligned_cols=118  Identities=13%  Similarity=0.246  Sum_probs=62.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh----------cCCCCccccCc-hhhhhHHHH---
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL----------YNSHDIFRVDN-TEGYNIRQL---   72 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~---   72 (143)
                      ++|.++|..||||||+++.|++ ++.     .++++|.+-+..+.+          .-+.++++.++ -+...+...   
T Consensus         1 ~iIglTG~igsGKStv~~~l~~-~G~-----~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~   74 (180)
T PF01121_consen    1 MIIGLTGGIGSGKSTVSKILAE-LGF-----PVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS   74 (180)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH-TT------EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred             CEEEEECCCcCCHHHHHHHHHH-CCC-----CEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence            4799999999999999999988 554     455666654443321          11233333322 111222111   


Q ss_pred             ----------HHHH-HHHHHHHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          73 ----------SARE-AQEDATKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        73 ----------~~~~-~~~~~~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                                +... ....+.+.+.  .....+++|.+.....   .|.. .     ++. ++.+.||.+.-++|-++|.
T Consensus        75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~---~~~~-~-----~D~-vi~V~a~~e~ri~Rl~~R~  144 (180)
T PF01121_consen   75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFES---GLEK-L-----CDE-VIVVYAPEEIRIKRLMERD  144 (180)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTT---TGGG-G-----SSE-EEEEE--HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhh---hHhh-h-----hce-EEEEECCHHHHHHHHHhhC
Confidence                      1111 1122333331  1126889999887653   2333 2     332 4566789999889888885


Q ss_pred             c
Q psy2713         140 M  140 (143)
Q Consensus       140 ~  140 (143)
                      .
T Consensus       145 ~  145 (180)
T PF01121_consen  145 G  145 (180)
T ss_dssp             T
T ss_pred             C
Confidence            3

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.64  E-value=3.2e-07  Score=72.26  Aligned_cols=38  Identities=26%  Similarity=0.489  Sum_probs=31.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .+.+|.+.|++||||||+++.|+..+.    .+.+++.|+|.
T Consensus        64 ~riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~  101 (656)
T PLN02318         64 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYN  101 (656)
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEccee
Confidence            468999999999999999999998763    35677888764

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.64  E-value=5.3e-08  Score=71.53  Aligned_cols=36  Identities=36%  Similarity=0.557  Sum_probs=29.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +++.+|+++|++||||||+|..|++.++.     .+++.|.
T Consensus         2 ~~~~~i~i~GptgsGKt~la~~la~~~~~-----~iis~Ds   37 (307)
T PRK00091          2 MKPKVIVIVGPTASGKTALAIELAKRLNG-----EIISADS   37 (307)
T ss_pred             CCceEEEEECCCCcCHHHHHHHHHHhCCC-----cEEeccc
Confidence            45689999999999999999999998753     4556655

>KOG1532|consensus

Probab=98.63  E-value=3.6e-07  Score=65.53  Aligned_cols=45  Identities=22%  Similarity=0.402  Sum_probs=39.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ..|.+|++.|+.||||||+.+.|..+++....+.-++++|..-..
T Consensus        17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~   61 (366)
T KOG1532|consen   17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN   61 (366)
T ss_pred             cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence            357899999999999999999999999988888899999865443

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.62  E-value=1.2e-06  Score=63.17  Aligned_cols=98  Identities=19%  Similarity=0.190  Sum_probs=58.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      .+|+++|+|||||||-.+.|-.        ...++.|++-...                            +.++++.+.
T Consensus         2 ~~vIiTGlSGaGKs~Al~~lED--------~Gy~cvDNlP~~L----------------------------l~~l~~~~~   45 (284)
T PF03668_consen    2 ELVIITGLSGAGKSTALRALED--------LGYYCVDNLPPSL----------------------------LPQLIELLA   45 (284)
T ss_pred             eEEEEeCCCcCCHHHHHHHHHh--------cCeeEEcCCcHHH----------------------------HHHHHHHHH
Confidence            4899999999999999988731        2334444432221                            111122211


Q ss_pred             -----cCCeEEEEeCCchhH-HHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          87 -----NDGEVAIIDGTTATM-EKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        87 -----~~~~~vi~d~~~~~~-~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                           .....+++|.-.... ........ -+++.+..+.+|.+.|+++++++|-..-++.
T Consensus        46 ~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~-~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~  105 (284)
T PF03668_consen   46 QSNSKIEKVAIVIDIRSREFFEDLFEALD-ELRKKGIDVRILFLDASDEVLIRRYSETRRR  105 (284)
T ss_pred             hcCCCCceEEEEEeCCChHHHHHHHHHHH-HHHhcCCceEEEEEECChHHHHHHHHhccCC
Confidence                 123446677765432 22222333 3344588888888999999999997665443

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>KOG1534|consensus

Probab=98.62  E-value=2e-07  Score=64.35  Aligned_cols=44  Identities=9%  Similarity=0.127  Sum_probs=38.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      |+++.+++.||.||||||++..+.++-...|-...+++.|...+
T Consensus         1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae   44 (273)
T KOG1534|consen    1 MMRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAE   44 (273)
T ss_pred             CCceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHH
Confidence            46788999999999999999999999888888899999986533

>KOG2134|consensus

Probab=98.62  E-value=9.6e-08  Score=70.86  Aligned_cols=99  Identities=22%  Similarity=0.273  Sum_probs=69.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      .+|+++|.|||||||++......-+..     .++.|.              ...        .    +.|+-...+.+.
T Consensus       270 eiV~~vgfp~sGks~f~a~~~~~~~y~-----~vn~d~--------------lg~--------~----~~C~~~~~e~l~  318 (422)
T KOG2134|consen  270 EIVVAVGFPGSGKSTFAAKRVVPNGYK-----IVNADT--------------LGT--------P----QNCLLANAEALK  318 (422)
T ss_pred             cEEEEEecCCCCcchhhhhhcccCcee-----Eeeccc--------------CCC--------c----hhhHHHHHHHhh
Confidence            689999999999999998764332211     122211              110        0    244555555555


Q ss_pred             cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                      . +..|++|.++.+.+.|..+.+ .+++.+.+...+++.++.+.....+..|
T Consensus       319 ~-~~sVvidnt~pd~~sr~~~~~-~a~e~~~p~rcf~~~~s~eq~~hn~~fR  368 (422)
T KOG2134|consen  319 H-GKSVVIDNTNPDAESRKYYLD-CATEREIPIRCFEMNSSVEQAQHNNRFR  368 (422)
T ss_pred             c-ccEEeeCCCCcchHHHHHHhh-hHHHhCccceeeeeccHHHhhhccccch
Confidence            4 678888999999999999999 9999999999999888877655444433

>KOG3220|consensus

Probab=98.62  E-value=8.2e-07  Score=60.84  Aligned_cols=117  Identities=19%  Similarity=0.165  Sum_probs=67.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhc----------CCCCccccCc-------------
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELY----------NSHDIFRVDN-------------   63 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~----------~~~~~~~~~~-------------   63 (143)
                      .+|.++|..||||||+++.+. .++..-+|+|.+     -+....+.          .+.++..+++             
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~v-----aR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~   75 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVV-----AREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS   75 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHH-----HHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence            478999999999999999997 556555544444     33332210          0111111100             


Q ss_pred             -hhhhhHHH-----HHHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          64 -TEGYNIRQ-----LSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        64 -~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                       .+......     .+...++.++..++..+-..+|+|.+-..+.   .|.. .+      ...|-++||.+.-++|-..
T Consensus        76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~~~~-~~------~~tvvV~cd~~~Ql~Rl~~  145 (225)
T KOG3220|consen   76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---KLLK-IC------HKTVVVTCDEELQLERLVE  145 (225)
T ss_pred             CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---hHHh-he------eeEEEEEECcHHHHHHHHH
Confidence             01000111     1234556777777777777888888877654   3443 22      2346678999997777776


Q ss_pred             hh
Q psy2713         138 QS  139 (143)
Q Consensus       138 r~  139 (143)
                      |-
T Consensus       146 Rd  147 (225)
T KOG3220|consen  146 RD  147 (225)
T ss_pred             hc
Confidence            64

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=98.62  E-value=9.6e-07  Score=58.91  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=31.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      +++++++|.||+||||+.+...+.+    ++..+++-++++-.
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~Mle   42 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDLMLE   42 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHHHHH
Confidence            5899999999999999999999887    34456677776554

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=98.61  E-value=2.6e-07  Score=60.27  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +|+++|++||||||+++.|++.+.
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCC
Confidence            478999999999999999998764

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.61  E-value=4.1e-07  Score=68.80  Aligned_cols=45  Identities=27%  Similarity=0.286  Sum_probs=38.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc----cCCCCceeEehhhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT----WTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~----~~~~~~~~~~~d~~~~~~   49 (143)
                      +|.+|+++|++|+||||.+..|+..+.    ..+.++.++..|.|+...
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa  221 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA  221 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH
Confidence            468999999999999999999998875    246788899999987664

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=98.61  E-value=2.6e-07  Score=67.22  Aligned_cols=44  Identities=30%  Similarity=0.351  Sum_probs=36.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC-C-CCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT-D-HKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~-~~~~~~~~d~~~~~   48 (143)
                      ++.+|+|+|++||||||++..|+.++... + .++.++..|.++..
T Consensus       193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~  238 (282)
T TIGR03499       193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIG  238 (282)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchh
Confidence            45799999999999999999999888654 3 78888988877543

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=98.61  E-value=1.7e-07  Score=67.78  Aligned_cols=41  Identities=29%  Similarity=0.470  Sum_probs=37.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .++.+|.++|+||+||||+...|...|...|+++.++..|.
T Consensus        49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP   89 (323)
T COG1703          49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP   89 (323)
T ss_pred             CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence            45679999999999999999999999999999999997774

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=98.60  E-value=7e-07  Score=60.35  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++|+++|+|||||||+|..++..++
T Consensus         2 ~~ili~G~~~sGKS~~a~~l~~~~~   26 (170)
T PRK05800          2 MLILVTGGARSGKSRFAERLAAQSG   26 (170)
T ss_pred             CEEEEECCCCccHHHHHHHHHHHcC
Confidence            3689999999999999999998865

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.60  E-value=4.7e-08  Score=67.58  Aligned_cols=34  Identities=21%  Similarity=0.371  Sum_probs=31.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .+|.+-||+||||||+|+.|+++|++.++++..+
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGam   38 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAM   38 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHH
Confidence            7899999999999999999999999998887665

>PRK06893 DNA replication initiation factor; Validated

Probab=98.60  E-value=1.1e-06  Score=62.10  Aligned_cols=36  Identities=17%  Similarity=0.173  Sum_probs=29.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      .+++.|+||+|||+++..++..+...+.++..+...
T Consensus        41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            689999999999999999998876556666666654

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=98.59  E-value=8e-08  Score=69.99  Aligned_cols=44  Identities=20%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~~   47 (143)
                      ..|.+|.+.|++||||||+|+.|...+...  ..++.+++.|++..
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~  105 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH  105 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence            468899999999999999999998877522  23567778887643

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.59  E-value=1e-06  Score=58.09  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=30.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +++++|+||+||||++..++..+...+.++.+++.+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~   37 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE   37 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence            4789999999999999999988766666677766654

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=98.59  E-value=8.8e-08  Score=64.74  Aligned_cols=42  Identities=19%  Similarity=0.199  Sum_probs=35.5

Q ss_pred             CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      |..+++.++.++|++||||||+++.|...+...++++..+..
T Consensus         1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~   42 (173)
T PRK10751          1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH   42 (173)
T ss_pred             CCCCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence            455677799999999999999999999999877777777743

>cd01394 radB RadB

Probab=98.58  E-value=1.9e-06  Score=60.21  Aligned_cols=38  Identities=24%  Similarity=0.235  Sum_probs=31.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.+.|.|||||||+|.+++......+.++.+++.+
T Consensus        19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e   56 (218)
T cd01394          19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE   56 (218)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            46899999999999999999998876666677777554

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=98.57  E-value=1.9e-07  Score=70.94  Aligned_cols=33  Identities=27%  Similarity=0.344  Sum_probs=25.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ..|.++|.+||||||+++.|++ ++...+++|.+
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i   34 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL   34 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence            3699999999999999999987 56554444444

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.57  E-value=3.3e-06  Score=63.67  Aligned_cols=105  Identities=22%  Similarity=0.277  Sum_probs=66.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhhhhhhhhh------cCCCCccccCchhhhhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAYRRKHLEL------YNSHDIFRVDNTEGYNIRQLSARE   76 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   76 (143)
                      ++.+|.|+||.|+||||-..+||.++.  ....++.++..|.||-.....      .-+.++--...           -+
T Consensus       202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~-----------~~  270 (407)
T COG1419         202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYS-----------PK  270 (407)
T ss_pred             cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecC-----------HH
Confidence            367999999999999999999998776  667888999999998876442      11222211111           12


Q ss_pred             HHHHHHHHHhcCCeEEEEeCCchh---HHHHHHHHHHHHhh-cCCEEEEE
Q psy2713          77 AQEDATKWLKNDGEVAIIDGTTAT---MEKRKQIHDYFARK-MGFKVLFV  122 (143)
Q Consensus        77 ~~~~~~~~l~~~~~~vi~d~~~~~---~~~r~~~~~~~~~~-~~~~~~~v  122 (143)
                      -+.+++..+.+ .+.+++|+....   ....+.+.+ ++.. ++..+.++
T Consensus       271 el~~ai~~l~~-~d~ILVDTaGrs~~D~~~i~el~~-~~~~~~~i~~~Lv  318 (407)
T COG1419         271 ELAEAIEALRD-CDVILVDTAGRSQYDKEKIEELKE-LIDVSHSIEVYLV  318 (407)
T ss_pred             HHHHHHHHhhc-CCEEEEeCCCCCccCHHHHHHHHH-HHhccccceEEEE
Confidence            24444455544 478999997644   444555555 3332 34444433

>KOG3308|consensus

Probab=98.57  E-value=1.1e-07  Score=64.98  Aligned_cols=41  Identities=24%  Similarity=0.467  Sum_probs=32.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ++..+|.+.|.+.|||||||+.|.+.++.    +.+++.|++..-
T Consensus         2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~----~~lIhqDDFyKp   42 (225)
T KOG3308|consen    2 MKTLIVGISGCTNSGKTTLAKSLHRFFPG----CSLIHQDDFYKP   42 (225)
T ss_pred             ceEEEEEeecccCCCHhHHHHHHHHHccC----CeeeccccccCc
Confidence            34578999999999999999999998753    347888876443

>PRK00023 cmk cytidylate kinase; Provisional

Probab=98.56  E-value=8.3e-08  Score=67.65  Aligned_cols=37  Identities=22%  Similarity=0.359  Sum_probs=32.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      |++.+|.+.|+|||||||+|+.|++.++..+++.+.+
T Consensus         2 ~~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~   38 (225)
T PRK00023          2 MKAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM   38 (225)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh
Confidence            4578999999999999999999999999887776664

>PRK13976 thymidylate kinase; Provisional

Probab=98.56  E-value=4.7e-06  Score=58.17  Aligned_cols=27  Identities=26%  Similarity=0.482  Sum_probs=24.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ++|++.|+.||||||+++.|++.|...
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~   27 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDI   27 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            479999999999999999999999764

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=98.56  E-value=6.7e-08  Score=68.65  Aligned_cols=36  Identities=19%  Similarity=0.339  Sum_probs=28.3

Q ss_pred             EEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713          11 LVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus        11 l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      ++|+|||||||+++.+.+++...+.++.+++.|..-
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~   36 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV   36 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence            589999999999999999999999999999998643

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PLN02796 D-glycerate 3-kinase

Probab=98.55  E-value=1.1e-07  Score=70.44  Aligned_cols=43  Identities=23%  Similarity=0.390  Sum_probs=36.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .+|.+|.++|++||||||+++.|...+...+.++..++.|++.
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY  140 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY  140 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence            3578999999999999999999999987666677778877654

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=98.54  E-value=1.6e-06  Score=57.60  Aligned_cols=122  Identities=16%  Similarity=0.254  Sum_probs=65.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE----ehhh---------hhhhhhhhcCCCCccccCchhhhhHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF----SVSA---------YRRKHLELYNSHDIFRVDNTEGYNIRQ   71 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~----~~d~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~   71 (143)
                      +..+|+++||+|+||.|+.......+.... +..++    ..+.         .-...|........|.... .++.+. 
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~-r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsW-qAhGL~-   80 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRP-RLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSW-QAHGLS-   80 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCC-ceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEe-hhcCcc-
Confidence            467999999999999999999888874321 11111    1100         0000000000011111000 000000 


Q ss_pred             HHHHHHHHHHHHHHhcCCeEEEEeCCc-hhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhccC
Q psy2713          72 LSAREAQEDATKWLKNDGEVAIIDGTT-ATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCS  142 (143)
Q Consensus        72 ~~~~~~~~~~~~~l~~~~~~vi~d~~~-~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~~  142 (143)
                         ...-.++..|+. .|.+||++.+- ..++.|..+-+         ..+|.++++.+.+.+|-.+|...+
T Consensus        81 ---Ygip~eId~wl~-~G~vvl~NgSRa~Lp~arrry~~---------Llvv~ita~p~VLaqRL~~RGREs  139 (192)
T COG3709          81 ---YGIPAEIDLWLA-AGDVVLVNGSRAVLPQARRRYPQ---------LLVVCITASPEVLAQRLAERGRES  139 (192)
T ss_pred             ---ccCchhHHHHHh-CCCEEEEeccHhhhHHHHHhhhc---------ceeEEEecCHHHHHHHHHHhccCC
Confidence               111133444555 47889988774 34444444333         456788899999999999998875

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.53  E-value=3.1e-06  Score=60.07  Aligned_cols=38  Identities=13%  Similarity=0.084  Sum_probs=32.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..++++|+||||||+++..+++.+...+.++..+..+.
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            47899999999999999999988776677777777765

>PLN02840 tRNA dimethylallyltransferase

Probab=98.53  E-value=3.2e-07  Score=69.75  Aligned_cols=29  Identities=28%  Similarity=0.364  Sum_probs=25.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..+|+++|++||||||+|..|++.++..
T Consensus        20 ~~~vi~I~GptgsGKTtla~~La~~~~~~   48 (421)
T PLN02840         20 KEKVIVISGPTGAGKSRLALELAKRLNGE   48 (421)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence            45689999999999999999999998654

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.53  E-value=1.3e-07  Score=71.71  Aligned_cols=42  Identities=29%  Similarity=0.420  Sum_probs=36.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      +|.+|.|.|++||||||+++.|...+...+.++..++.|++.
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY  252 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY  252 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence            678999999999999999999998886667778888888764

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=98.53  E-value=2.1e-06  Score=58.27  Aligned_cols=26  Identities=27%  Similarity=0.319  Sum_probs=23.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +..+++++||+|+||||+.+.|.+..
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            46799999999999999999998875

>TIGR00017 cmk cytidylate kinase

Probab=98.52  E-value=8.5e-08  Score=67.24  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=29.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCcee
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV   39 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~   39 (143)
                      ++.+|.+.|++||||||+++.|+++++..+++++.
T Consensus         1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~   35 (217)
T TIGR00017         1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA   35 (217)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence            35789999999999999999999999876665543

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.51  E-value=1.2e-07  Score=62.78  Aligned_cols=43  Identities=26%  Similarity=0.309  Sum_probs=36.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +++-|.++|+|||||||++..++..|...+++..-|-....+.
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~   46 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE   46 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence            4567999999999999999999999988888877776655544

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.50  E-value=7.6e-06  Score=62.82  Aligned_cols=43  Identities=33%  Similarity=0.397  Sum_probs=36.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~~~~   48 (143)
                      ..+++|+|++|+||||++..|+.++.  ..+.++.++..|.++..
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~  265 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIG  265 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHH
Confidence            45899999999999999999998775  45788999999988654

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=98.48  E-value=2.1e-07  Score=68.99  Aligned_cols=41  Identities=27%  Similarity=0.401  Sum_probs=36.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .++.+|.++|+|||||||++..|...+...+.++.++..|.
T Consensus        54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp   94 (332)
T PRK09435         54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP   94 (332)
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            45789999999999999999999999988788899888875

>PLN02748 tRNA dimethylallyltransferase

Probab=98.47  E-value=5.6e-07  Score=69.43  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=28.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++.+|+++|++||||||||..|++.++     ..+++.|.
T Consensus        21 ~~~~i~i~GptgsGKs~la~~la~~~~-----~eii~~Ds   55 (468)
T PLN02748         21 KAKVVVVMGPTGSGKSKLAVDLASHFP-----VEIINADS   55 (468)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcC-----eeEEcCch
Confidence            456899999999999999999999975     34566664

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=98.47  E-value=8.1e-06  Score=57.34  Aligned_cols=38  Identities=18%  Similarity=0.222  Sum_probs=31.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.++|+||||||++|.+++...-..+.++..++.+
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e   60 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE   60 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence            46899999999999999999997765556777777666

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=98.47  E-value=7e-07  Score=57.25  Aligned_cols=27  Identities=33%  Similarity=0.612  Sum_probs=20.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ...++++.|+||+|||++++.+++.+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~   29 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLN   29 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence            457899999999999999999998874

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=98.47  E-value=6.5e-06  Score=57.14  Aligned_cols=39  Identities=18%  Similarity=0.221  Sum_probs=31.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..++.++|+||||||+++.+++......+.++..++.+.
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            478999999999999999999977655566666666653

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PRK09087 hypothetical protein; Validated

Probab=98.47  E-value=1.8e-06  Score=60.91  Aligned_cols=30  Identities=30%  Similarity=0.151  Sum_probs=24.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      .++++|++||||||+++.+++..+..+++.
T Consensus        46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~   75 (226)
T PRK09087         46 VVVLAGPVGSGKTHLASIWREKSDALLIHP   75 (226)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhcCCEEecH
Confidence            589999999999999999998765544433

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.46  E-value=2e-07  Score=59.55  Aligned_cols=38  Identities=32%  Similarity=0.309  Sum_probs=29.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +..++++|+|||||||+++.++..+...+.....++.+
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~   39 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE   39 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence            45799999999999999999999887654334444333

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>KOG3078|consensus

Probab=98.45  E-value=5.2e-07  Score=63.37  Aligned_cols=118  Identities=18%  Similarity=0.208  Sum_probs=70.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      ..-.++.|+|||||+|+|..+++.+...++     +.+++.+......  .+.-.   .....+..+...+.   .. ++
T Consensus        15 ~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl-----~tGdllr~~ia~~--telg~~~~~~~~~g~lvpDeiv---~~-~l   83 (235)
T KOG3078|consen   15 GVRAVLLGAPGSGKGTQAPRLTKNFGVIHI-----STGDLLRDEIASG--TELGKEAKEAIDKGKLVPDEVV---VR-LL   83 (235)
T ss_pred             ceEEEEEeCCCCCCCccCHHHHHhcCCccc-----hhHHHHHHHHhcc--CcHHHHHHHHHHhcCcCcHHHH---HH-HH
Confidence            467899999999999999999999987774     5555444432211  11000   00001111111111   12 22


Q ss_pred             H-HHhc--CCeEEEEeCCchhHHHHHHHHHHHHhhcCCE-EEEEEeecCcHHHHHHhhhhh
Q psy2713          83 K-WLKN--DGEVAIIDGTTATMEKRKQIHDYFARKMGFK-VLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        83 ~-~l~~--~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      + .+..  ....+++|....+..+.+.+.+     +++. -.+|++.||++.+.+|-..|.
T Consensus        84 ~~~l~~~~~~~~~ildg~Prt~~qa~~l~~-----~~~~~d~Vi~l~vp~~~L~~ri~~r~  139 (235)
T KOG3078|consen   84 EKRLENPRCQKGFILDGFPRTVQQAEELLD-----RIAQIDLVINLKVPEEVLVDRITGRR  139 (235)
T ss_pred             HhhccccccccccccCCCCcchHHHHHHHH-----ccCCcceEEEecCCHHHHHHHHhccc
Confidence            2 2211  2467999999998876655444     2333 367899999999999877664

>PRK05973 replicative DNA helicase; Provisional

Probab=98.45  E-value=4.1e-07  Score=64.48  Aligned_cols=38  Identities=24%  Similarity=0.266  Sum_probs=31.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .++++.|.||+||||++.+++...-..+.++.+|+.+.
T Consensus        65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe  102 (237)
T PRK05973         65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY  102 (237)
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence            58999999999999999999876645577777776653

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.44  E-value=7.3e-06  Score=63.77  Aligned_cols=28  Identities=36%  Similarity=0.449  Sum_probs=25.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+++.
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~   62 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNCS   62 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence            4579999999999999999999998764

>COG4240 Predicted kinase [General function prediction only]

Probab=98.44  E-value=2.7e-07  Score=64.57  Aligned_cols=42  Identities=24%  Similarity=0.433  Sum_probs=37.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC-CCceeEehhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD-HKSKVFSVSAYR   46 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~-~~~~~~~~d~~~   46 (143)
                      .|.++.++|+.||||||+|..|...|...+ .++..++.|++.
T Consensus        49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY   91 (300)
T COG4240          49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY   91 (300)
T ss_pred             CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh
Confidence            478999999999999999999999998888 588999999864

>PRK04296 thymidine kinase; Provisional

Probab=98.44  E-value=3.5e-06  Score=57.88  Aligned_cols=36  Identities=17%  Similarity=0.071  Sum_probs=30.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      ..+++++|+||+||||++..++.++...+.++.++.
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k   37 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK   37 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            368999999999999999999988866677777663

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.43  E-value=4.8e-06  Score=62.71  Aligned_cols=44  Identities=27%  Similarity=0.283  Sum_probs=34.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc-cCC-CCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTD-HKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~-~~~~~~~~d~~~~~   48 (143)
                      ...+++|+|++|+||||++.+|+.++. ..+ .++.++..|.++..
T Consensus       136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~g  181 (374)
T PRK14722        136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIG  181 (374)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence            356899999999999999999998763 223 46778888887543

>PRK08727 hypothetical protein; Validated

Probab=98.43  E-value=7.7e-06  Score=57.98  Aligned_cols=39  Identities=26%  Similarity=0.167  Sum_probs=32.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      ..++++|++|+|||+++..++..+...+.++..++.++.
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~   80 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA   80 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence            359999999999999999999887767777777776654

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.42  E-value=1.1e-05  Score=54.85  Aligned_cols=36  Identities=19%  Similarity=0.134  Sum_probs=29.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ++++.|+||+|||+++.+++...-..+.++.+++.+
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e   36 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE   36 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence            378999999999999999987765667777777664

A related protein is found in archaea.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.42  E-value=1.4e-05  Score=51.30  Aligned_cols=37  Identities=27%  Similarity=0.320  Sum_probs=28.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      ...+++.|+||+||||+++.+++.+...+.....+..
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~   55 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA   55 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence            4679999999999999999999887533443444433

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.42  E-value=5.2e-06  Score=55.82  Aligned_cols=25  Identities=20%  Similarity=0.336  Sum_probs=22.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .-.|.++||+||||||+-+.++...
T Consensus        29 Ge~iaitGPSG~GKStllk~va~Li   53 (223)
T COG4619          29 GEFIAITGPSGCGKSTLLKIVASLI   53 (223)
T ss_pred             CceEEEeCCCCccHHHHHHHHHhcc
Confidence            3579999999999999999999765

>PHA00729 NTP-binding motif containing protein

Probab=98.42  E-value=5.6e-07  Score=63.18  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=23.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ....|+++|.||+||||+|..|++.+.
T Consensus        16 ~f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         16 GFVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            345799999999999999999999874

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.42  E-value=7.2e-06  Score=63.47  Aligned_cols=28  Identities=25%  Similarity=0.288  Sum_probs=25.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|+||+||||+|+.+++.+.+.
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce   67 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCE   67 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence            4568999999999999999999998764

>PRK12377 putative replication protein; Provisional

Probab=98.41  E-value=4e-06  Score=59.92  Aligned_cols=42  Identities=21%  Similarity=0.243  Sum_probs=35.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ..++|.|+||+|||++|..++..+...+..+..++..++...
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~  143 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR  143 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence            468999999999999999999999877888877777665543

>PF13173 AAA_14: AAA domain

Probab=98.41  E-value=5.9e-06  Score=53.15  Aligned_cols=38  Identities=21%  Similarity=0.274  Sum_probs=28.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..++++.|+.||||||+++++++.+. ..-+...++.++
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~   39 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDD   39 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCC
Confidence            46899999999999999999998765 223334444443

>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional

Probab=98.41  E-value=4.1e-07  Score=68.60  Aligned_cols=37  Identities=30%  Similarity=0.477  Sum_probs=32.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      ..|.+|.++|++||||||++..|.+.+... +++.++.
T Consensus         3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik   39 (369)
T PRK14490          3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYK   39 (369)
T ss_pred             CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEE
Confidence            457899999999999999999999999877 7777773

>KOG0744|consensus

Probab=98.41  E-value=6e-07  Score=65.77  Aligned_cols=25  Identities=36%  Similarity=0.557  Sum_probs=23.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+|++.||||.|||++++.|+++|.
T Consensus       178 RliLlhGPPGTGKTSLCKaLaQkLS  202 (423)
T KOG0744|consen  178 RLILLHGPPGTGKTSLCKALAQKLS  202 (423)
T ss_pred             eEEEEeCCCCCChhHHHHHHHHhhe
Confidence            5899999999999999999999984

>PRK13768 GTPase; Provisional

Probab=98.40  E-value=4.3e-07  Score=65.13  Aligned_cols=40  Identities=23%  Similarity=0.346  Sum_probs=35.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +++++++.|++||||||++..++..+...|.++.+++.|.
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~   40 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP   40 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence            4579999999999999999999999988888888887774

>smart00763 AAA_PrkA PrkA AAA domain

Probab=98.40  E-value=3.1e-07  Score=68.45  Aligned_cols=28  Identities=29%  Similarity=0.293  Sum_probs=25.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ++.+++|+|||||||||+|+.|++.+..
T Consensus        77 ~r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       77 RKQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4689999999999999999999998854

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.39  E-value=1.3e-05  Score=62.38  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=24.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|+||+||||+|+.+++.+.+
T Consensus        36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~   62 (472)
T PRK14962         36 SHAYIFAGPRGTGKTTVARILAKSLNC   62 (472)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            456899999999999999999999865

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=98.39  E-value=4.5e-07  Score=64.57  Aligned_cols=41  Identities=27%  Similarity=0.396  Sum_probs=32.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +..+|-++|+||+|||||...|.+.+...+.+..++..|.-
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS   68 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS   68 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence            46799999999999999999999999888999999988754

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=98.38  E-value=1.4e-05  Score=57.64  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=30.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d   43 (143)
                      .++++.|+||+||||++.+++..+-.. +.++.+++.+
T Consensus        31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E   68 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE   68 (271)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence            589999999999999999998776444 7777788774

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=98.38  E-value=2e-07  Score=76.50  Aligned_cols=36  Identities=22%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      +||+..+|.+.|+|||||||+|+.|+++|++.++++
T Consensus        30 ~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~   65 (863)
T PRK12269         30 RPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNT   65 (863)
T ss_pred             cccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence            467778999999999999999999999998765533

>TIGR02012 tigrfam_recA protein RecA

Probab=98.38  E-value=5e-06  Score=61.47  Aligned_cols=38  Identities=16%  Similarity=0.153  Sum_probs=29.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.++|+|||||||||..++......+-.+..+..+
T Consensus        55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E   92 (321)
T TIGR02012        55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE   92 (321)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence            36899999999999999999887665556556666443

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.37  E-value=2.3e-05  Score=56.69  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=35.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ...++++|++|+||||++..|+..+...+.+..+++.|.++..
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~  117 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG  117 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHH
Confidence            4689999999999999999999887665677888888876533

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=98.37  E-value=4.2e-06  Score=57.08  Aligned_cols=121  Identities=19%  Similarity=0.140  Sum_probs=62.3

Q ss_pred             EEccCCCChhHHHHHHHHHHccCCCCceeEehhh----hhhhhhhhcCCCCccc-cCchhhhhHHHHHHHHH---HHH-H
Q psy2713          11 LVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA----YRRKHLELYNSHDIFR-VDNTEGYNIRQLSAREA---QED-A   81 (143)
Q Consensus        11 l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~-~   81 (143)
                      |-|+.||||||+++.|+++|...+++ .++....    ++.. +.     +++. .............+...   +.. +
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~~~~g~~-ir-----~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I   73 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYK-VIITFPPGSTPIGEL-IR-----ELLRSESELSPEAEALLFAADRAWHLARVI   73 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEE-EEEEESSTSSHHHHH-HH-----HHHHTSSTCGHHHHHHHHHHHHHHHHHHTH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCChHHHH-HH-----HHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999999988876 3332211    1111 00     0000 00001101111111111   122 2


Q ss_pred             HHHHhcCCeEEEEeCCchhHHH---------HHHHHHHHHhhcC--CEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          82 TKWLKNDGEVAIIDGTTATMEK---------RKQIHDYFARKMG--FKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        82 ~~~l~~~~~~vi~d~~~~~~~~---------r~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ...+. .|.+||+|=.....-.         .+.+.. +.+...  .|-+++.+.++.++..+|...|..
T Consensus        74 ~~~l~-~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~-~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~  141 (186)
T PF02223_consen   74 RPALK-RGKIVICDRYIYSTLAYQGAKGELDIDWIWR-LNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE  141 (186)
T ss_dssp             HHHHH-TTSEEEEESEHHHHHHHHTTTTSSTHHHHHH-HHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred             HHHHc-CCCEEEEechhHHHHHhCccccCCcchhhhH-HHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence            22334 4789998864311100         112222 333222  556778888999999999988865

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=98.37  E-value=1.4e-06  Score=63.19  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=32.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .+|.++|.+|||||||+..|+..|...| ++.++..|.
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~   38 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD   38 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence            3799999999999999999999998888 777776653

>CHL00181 cbbX CbbX; Provisional

Probab=98.37  E-value=1.1e-05  Score=58.94  Aligned_cols=28  Identities=32%  Similarity=0.424  Sum_probs=23.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ...++|.|+||+||||+|+.+++.+...
T Consensus        59 ~~~ill~G~pGtGKT~lAr~la~~~~~~   86 (287)
T CHL00181         59 GLHMSFTGSPGTGKTTVALKMADILYKL   86 (287)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3468999999999999999999877543

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.36  E-value=1e-05  Score=58.18  Aligned_cols=27  Identities=30%  Similarity=0.405  Sum_probs=23.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..-+++.|+||+||||+|+.+++.+..
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l~~   68 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLFKE   68 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            356899999999999999999987743

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=98.36  E-value=3.3e-07  Score=61.36  Aligned_cols=26  Identities=31%  Similarity=0.585  Sum_probs=22.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +.|+++|.||+||||+|+.|+ .++..
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~   26 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYK   26 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCc
Confidence            478999999999999999999 66543

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.36  E-value=7.9e-06  Score=66.36  Aligned_cols=43  Identities=26%  Similarity=0.297  Sum_probs=34.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc-cCC-CCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT-WTD-HKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~-~~~~~~~~d~~~~~   48 (143)
                      +.+|+|+|++|+||||.+.+|+..+. ..+ .++.++..|.++..
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Rig  229 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIG  229 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchH
Confidence            57999999999999999999998773 333 46778888887744

>PRK06526 transposase; Provisional

Probab=98.35  E-value=8.6e-06  Score=58.47  Aligned_cols=42  Identities=24%  Similarity=0.249  Sum_probs=32.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +..++++|+||+|||++|..|+..+-..+.++..++..++..
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~  139 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA  139 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH
Confidence            457999999999999999999988766677766665554433

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.34  E-value=1.2e-05  Score=58.66  Aligned_cols=29  Identities=28%  Similarity=0.448  Sum_probs=24.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .-++|.|+||+||||+|+.+++.+...+.
T Consensus        59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~   87 (284)
T TIGR02880        59 LHMSFTGNPGTGKTTVALRMAQILHRLGY   87 (284)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence            46999999999999999999988865443

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=98.34  E-value=7.7e-06  Score=54.66  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=18.2

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |+|+|.||+||||+++.|++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999988

>PRK05642 DNA replication initiation factor; Validated

Probab=98.33  E-value=8.3e-06  Score=57.85  Aligned_cols=40  Identities=10%  Similarity=0.101  Sum_probs=33.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      ..++++|++|+|||++++.++..+...+.++..++.+++.
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~   85 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL   85 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence            4689999999999999999998776667778888887654

>PRK08181 transposase; Validated

Probab=98.33  E-value=4.6e-06  Score=60.29  Aligned_cols=43  Identities=21%  Similarity=0.192  Sum_probs=35.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ...++|+|+||+|||++|..++..+...+.++..++..++...
T Consensus       106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~  148 (269)
T PRK08181        106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK  148 (269)
T ss_pred             CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence            4569999999999999999999888767887877777665443

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.33  E-value=2.3e-05  Score=62.83  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=25.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~   64 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCE   64 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5689999999999999999999999763

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=98.33  E-value=2.2e-05  Score=56.55  Aligned_cols=38  Identities=13%  Similarity=0.244  Sum_probs=30.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..+++++|+||+||||+|.+++...-..+.++..++.+
T Consensus        36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            46899999999999999999987654456777777655

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.32  E-value=2.8e-05  Score=61.82  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=25.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +..++|+|++|+||||+|+.+++.+.+.+
T Consensus        38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~   66 (605)
T PRK05896         38 THAYIFSGPRGIGKTSIAKIFAKAINCLN   66 (605)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            56799999999999999999999997654

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=98.31  E-value=1.8e-05  Score=56.27  Aligned_cols=115  Identities=12%  Similarity=0.207  Sum_probs=69.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh--hhhc--CCCCccccCchhhhhHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH--LELY--NSHDIFRVDNTEGYNIRQLSAREAQE   79 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
                      |++.++++.|--|+||||+|..|+..+...+.++..+..|......  +...  ...++...   +      .+....++
T Consensus         1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~---~------~i~~r~fD   71 (241)
T PRK13886          1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMDG---D------EINTRNFD   71 (241)
T ss_pred             CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceecccC---C------ccchhhHH
Confidence            4566777889999999999999999998888888888777433221  1100  01111110   0      00122345


Q ss_pred             HHHHHHhcCCeEEEEeCCchhHHHHH------HHHHHHHhhcCCEEEEEEeecCc
Q psy2713          80 DATKWLKNDGEVAIIDGTTATMEKRK------QIHDYFARKMGFKVLFVELIVQD  128 (143)
Q Consensus        80 ~~~~~l~~~~~~vi~d~~~~~~~~r~------~~~~~~~~~~~~~~~~v~~~~~~  128 (143)
                      ++++.+...+..+|+|........-.      .+.+ ++++.|..+++..+...-
T Consensus        72 ~Lve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~-ll~e~g~~lvvh~vi~gg  125 (241)
T PRK13886         72 ALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPA-LLQDMGHELVVHTVVTGG  125 (241)
T ss_pred             HHHHHHhccCCCEEEECCCcchHHHHHHHHhCcHHH-HHHHCCceEEEEEEECCC
Confidence            56665533345578887764443332      3445 788889998877666554

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.30  E-value=3.3e-05  Score=56.92  Aligned_cols=43  Identities=19%  Similarity=0.159  Sum_probs=36.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ..-++|.|++|+|||+++..++..+...++++..+....+...
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~  198 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE  198 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence            4579999999999999999999999888888888877765444

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=98.30  E-value=7.4e-06  Score=58.80  Aligned_cols=43  Identities=21%  Similarity=0.370  Sum_probs=34.3

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCC--ceeEehhhh
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHK--SKVFSVSAY   45 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~--~~~~~~d~~   45 (143)
                      ...|.+|.++|.||+||||+|+.|+..+...+-.  ++++-.|.+
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF  123 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF  123 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccc
Confidence            3458899999999999999999999888654433  677777755

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.30  E-value=2.3e-05  Score=59.03  Aligned_cols=27  Identities=30%  Similarity=0.305  Sum_probs=24.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|+||+||||+|+.+++.+.+
T Consensus        38 ~h~~L~~Gp~G~GKTtla~~la~~l~c   64 (363)
T PRK14961         38 HHAWLLSGTRGVGKTTIARLLAKSLNC   64 (363)
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            567899999999999999999999864

>PRK06620 hypothetical protein; Validated

Probab=98.30  E-value=4.6e-06  Score=58.40  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=22.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..++++|+|||||||+++.+++..+
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~   69 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN   69 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC
Confidence            4689999999999999999887754

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=98.29  E-value=8.8e-07  Score=59.00  Aligned_cols=36  Identities=25%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +|.++|++||||||++..|.+.+...|+++.++..+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~   36 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD   36 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            578999999999999999999998778888887544

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.28  E-value=2.3e-05  Score=61.51  Aligned_cols=28  Identities=21%  Similarity=0.300  Sum_probs=25.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   65 (509)
T PRK14958         38 HHAYLFTGTRGVGKTTISRILAKCLNCE   65 (509)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            5678999999999999999999999764

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=98.28  E-value=1.3e-06  Score=58.39  Aligned_cols=37  Identities=30%  Similarity=0.358  Sum_probs=32.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      .+|.++|.+||||||++..|...+...++++.++..+
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~   38 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHD   38 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEec
Confidence            4899999999999999999999998888877777543

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.28  E-value=3e-05  Score=61.22  Aligned_cols=27  Identities=26%  Similarity=0.320  Sum_probs=24.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|++|+||||+|+.+++.+.+
T Consensus        38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c   64 (546)
T PRK14957         38 HHAYLFTGTRGVGKTTLGRLLAKCLNC   64 (546)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999999875

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.28  E-value=5.1e-06  Score=56.56  Aligned_cols=44  Identities=20%  Similarity=0.141  Sum_probs=34.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~   49 (143)
                      ..-++|.|+||+|||++|..++..+-..++.+..+...++....
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l   90 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL   90 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence            45799999999999999999998887788989889888776553

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>PRK08116 hypothetical protein; Validated

Probab=98.27  E-value=2.7e-05  Score=56.36  Aligned_cols=40  Identities=20%  Similarity=0.101  Sum_probs=33.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .-++|.|.||+|||+||..+++.+...+..+..++..++.
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll  154 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL  154 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            4589999999999999999999986667777777766543

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=98.27  E-value=1.7e-05  Score=56.37  Aligned_cols=40  Identities=18%  Similarity=0.194  Sum_probs=30.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +..++++.|+||||||++|.+++...-..+.++.+++.+.
T Consensus        20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee   59 (237)
T TIGR03877        20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE   59 (237)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence            3478999999999999999998755334577777776543

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=98.27  E-value=1.3e-06  Score=64.09  Aligned_cols=42  Identities=26%  Similarity=0.280  Sum_probs=36.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      ..+.+|.++|+|||||||++..|...+...+.++.++..|..
T Consensus        32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~   73 (300)
T TIGR00750        32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS   73 (300)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence            346789999999999999999999988777888888877743

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.25  E-value=1.3e-05  Score=59.28  Aligned_cols=37  Identities=16%  Similarity=0.119  Sum_probs=29.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      ..++.+.|+|||||||+|..++......+-.+..++.
T Consensus        55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~   91 (325)
T cd00983          55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA   91 (325)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence            3589999999999999999998766555555666644

RecA couples ATP hydrolysis to DNA strand exchange.

>PRK09183 transposase/IS protein; Provisional

Probab=98.25  E-value=3.6e-05  Score=55.46  Aligned_cols=39  Identities=23%  Similarity=0.191  Sum_probs=31.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      ..+++.|+||+||||+|..|+..+...+.++..++..++
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l  141 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL  141 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence            468899999999999999998776566777767665443

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=98.25  E-value=2.4e-05  Score=59.14  Aligned_cols=38  Identities=24%  Similarity=0.190  Sum_probs=30.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|.||+||||++.+++..+...+.++.+++.+
T Consensus        82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E  119 (372)
T cd01121          82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE  119 (372)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence            46899999999999999999998775555566666544

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=98.25  E-value=8.4e-07  Score=67.42  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      .|.-|+|.|+||+||||+|+.|++.++..+++.+
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd   79 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   79 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence            4678999999999999999999999988776665

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=98.24  E-value=1.4e-06  Score=57.13  Aligned_cols=36  Identities=33%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      .+|.++|+++|||||+++.|..++...+++..++..
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~   36 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH   36 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence            378999999999999999999999888888886533

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.24  E-value=8.9e-07  Score=61.99  Aligned_cols=27  Identities=30%  Similarity=0.310  Sum_probs=22.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .-++|.||||+||||+|.-|++.++..
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~   77 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVN   77 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCC
Confidence            468999999999999999999998643

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=98.24  E-value=2.4e-06  Score=62.18  Aligned_cols=32  Identities=34%  Similarity=0.501  Sum_probs=26.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +|+++|++|||||++|..|++.++.     .+++.|.
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~-----~iis~Ds   32 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNA-----EIISVDS   32 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCC-----cEEEech
Confidence            5899999999999999999998753     4566665

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.23  E-value=4.7e-05  Score=53.89  Aligned_cols=38  Identities=16%  Similarity=0.209  Sum_probs=29.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|+|||||||+|.+++..+-..+.++..++.+
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e   61 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ   61 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence            35899999999999999988776654456667777654

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=3.8e-05  Score=60.18  Aligned_cols=43  Identities=26%  Similarity=0.268  Sum_probs=34.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~~~   48 (143)
                      ..+|+|+|++|+||||++..|+..+...  +.++.++..|.++..
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRig  394 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG  394 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence            4689999999999999999999876443  356778888877643

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.23  E-value=3.9e-05  Score=60.13  Aligned_cols=28  Identities=21%  Similarity=0.235  Sum_probs=25.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|+||+||||+|+.+++.+++.
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~   70 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCS   70 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            4679999999999999999999999764

>PLN02772 guanylate kinase

Probab=98.23  E-value=3.3e-05  Score=58.40  Aligned_cols=27  Identities=19%  Similarity=0.241  Sum_probs=23.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..++|+|+||+|||||||.+.|.+.+.
T Consensus       134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p  160 (398)
T PLN02772        134 AEKPIVISGPSGVGKGTLISMLMKEFP  160 (398)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence            346999999999999999999987653

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=98.23  E-value=1.7e-06  Score=56.09  Aligned_cols=28  Identities=36%  Similarity=0.266  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..+|++.|..||||||+++.+++.++..
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~   49 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ   49 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence            4689999999999999999999998754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG3877|consensus

Probab=98.22  E-value=6.2e-05  Score=54.36  Aligned_cols=41  Identities=27%  Similarity=0.355  Sum_probs=32.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCC---ceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHK---SKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~---~~~~~~d~~   45 (143)
                      ..++|.+-|.-|||||++|++||+.|+..+.+   .+.+-.|.+
T Consensus        70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsy  113 (393)
T KOG3877|consen   70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSY  113 (393)
T ss_pred             cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeeccc
Confidence            35799999999999999999999999876543   455544433

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.22  E-value=4e-05  Score=57.03  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=35.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ..++|.|++|+|||+||..+++.+-..+..+..++.+++..
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~  224 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE  224 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence            57999999999999999999998877788888887776544

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=98.22  E-value=2.4e-06  Score=59.85  Aligned_cols=41  Identities=12%  Similarity=0.074  Sum_probs=32.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .+..++++|+||+||||+|+.+++.....+.+...++..++
T Consensus        37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~   77 (226)
T TIGR03420        37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL   77 (226)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence            35689999999999999999999887655666666666554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=98.22  E-value=1.1e-06  Score=71.33  Aligned_cols=33  Identities=24%  Similarity=0.458  Sum_probs=30.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .|.+.|+|||||||+|+.|++.+++.++++..+
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~   35 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM   35 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE
Confidence            789999999999999999999999888777665

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=98.21  E-value=4e-05  Score=62.25  Aligned_cols=28  Identities=21%  Similarity=0.271  Sum_probs=25.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+++.|++.+.+.
T Consensus        38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe   65 (830)
T PRK07003         38 HHAYLFTGTRGVGKTTLSRIFAKALNCE   65 (830)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            5678999999999999999999999764

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=98.20  E-value=4.7e-05  Score=54.31  Aligned_cols=100  Identities=17%  Similarity=0.181  Sum_probs=55.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH-
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL-   85 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-   85 (143)
                      .+|+++|++|||||+-.+.|-        |...++.|+.-....                   ..      +.++.... 
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lE--------DlGyycvDNLPp~Ll-------------------p~------~~~~~~~~~   48 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLE--------DLGYYCVDNLPPQLL-------------------PK------LADLMLTLE   48 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHH--------hcCeeeecCCCHHHH-------------------HH------HHHHHhhcc
Confidence            479999999999999988873        223345554322211                   11      11111111 


Q ss_pred             hc-CCeEEEEeCCch-hHHHHHHHHHHHHhhc-CCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          86 KN-DGEVAIIDGTTA-TMEKRKQIHDYFARKM-GFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        86 ~~-~~~~vi~d~~~~-~~~~r~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .. ....+++|--+. .......+.+ .+++. ++.+.++.+.++++++++|-..-++
T Consensus        49 ~~~~kvAv~iDiRs~~~~~~l~~~l~-~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR  105 (286)
T COG1660          49 SRITKVAVVIDVRSREFFGDLEEVLD-ELKDNGDIDPRVLFLEADDETLVRRYSETRR  105 (286)
T ss_pred             cCCceEEEEEecccchhHHHHHHHHH-HHHhcCCCCceEEEEECchhHHHHHHhhhhh
Confidence            11 123466676543 2233344555 55555 3445666677999999998765443

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.20  E-value=4.9e-05  Score=60.55  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=25.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~   65 (576)
T PRK14965         38 AHAFLFTGARGVGKTSTARILAKALNCE   65 (576)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence            5678999999999999999999998753

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.20  E-value=5.7e-05  Score=58.42  Aligned_cols=38  Identities=21%  Similarity=0.167  Sum_probs=31.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      -++++|+||+|||++++.++..+...+.++..++.+.+
T Consensus       143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f  180 (445)
T PRK12422        143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF  180 (445)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence            47899999999999999999988766777777776654

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=98.19  E-value=1.7e-05  Score=58.08  Aligned_cols=34  Identities=18%  Similarity=0.302  Sum_probs=29.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +.+|+++||.|||||.+|-.|+++.      ..++|+|..
T Consensus         4 ~~ii~I~GpTasGKS~LAl~LA~~~------~eIIsaDS~   37 (300)
T PRK14729          4 NKIVFIFGPTAVGKSNILFHFPKGK------AEIINVDSI   37 (300)
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC------CcEEeccHH
Confidence            4599999999999999999999882      367888864

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.19  E-value=1.5e-06  Score=56.48  Aligned_cols=23  Identities=52%  Similarity=0.720  Sum_probs=21.7

Q ss_pred             EEEEccCCCChhHHHHHHHHHHc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      |++.|+||+|||++++.+++.++
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~   24 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLG   24 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhh
Confidence            78999999999999999999984

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=98.19  E-value=1.6e-06  Score=65.93  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=28.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      |..|+|+|+||+||||+|+.|++.++..++..+
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD   82 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence            578999999999999999999999877665444

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=98.19  E-value=1.6e-06  Score=58.51  Aligned_cols=32  Identities=28%  Similarity=0.319  Sum_probs=25.6

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      |+++|.||+||||+.+.+.+.+...+++..-|
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf   33 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGF   33 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhccCCccceE
Confidence            78999999999999999999986555555444

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.19  E-value=4.2e-05  Score=63.10  Aligned_cols=28  Identities=25%  Similarity=0.253  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|+||+||||+|+.+++.+.+.
T Consensus        38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce   65 (944)
T PRK14949         38 HHAYLFTGTRGVGKTSLARLFAKGLNCE   65 (944)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence            5678999999999999999999998764

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=98.19  E-value=8.9e-06  Score=57.11  Aligned_cols=22  Identities=32%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      |..++++|.||+||||+|+.++
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~   33 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLP   33 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcC
Confidence            5789999999999999999885

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=98.18  E-value=2.4e-06  Score=57.12  Aligned_cols=39  Identities=26%  Similarity=0.305  Sum_probs=34.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +++++-++|.++||||||...|.+.|...|++..++...
T Consensus         1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~   39 (161)
T COG1763           1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA   39 (161)
T ss_pred             CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence            457999999999999999999999999999988888543

>KOG1384|consensus

Probab=98.18  E-value=3.4e-05  Score=56.63  Aligned_cols=132  Identities=15%  Similarity=0.146  Sum_probs=68.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh----hhhhhhh-hhh--cCCCCccccCchhhhhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV----SAYRRKH-LEL--YNSHDIFRVDNTEGYNIRQLSAREA   77 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~----d~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~   77 (143)
                      +.++|++.|..|||||-||-.||.+++..-+++|-+..    |-.-... ...  ..++-+......+..+-....-..+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a   85 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA   85 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence            46899999999999999999999997754443333311    0000000 000  0011111111111111111111122


Q ss_pred             HHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHH---------------HHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          78 QEDATKWLKNDGEVAIIDGTTATMEKRKQIHDY---------------FARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        78 ~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ...+.+..+.+..++|+-+++++.+.   +...               ...+..|+..++|+.++.+++..|--+|.
T Consensus        86 ~~aie~I~~rgk~PIv~GGs~~yi~a---l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RV  159 (348)
T KOG1384|consen   86 SRAIEEIHSRGKLPIVVGGSNSYLQA---LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRV  159 (348)
T ss_pred             HHHHHHHHhCCCCCEEeCCchhhHHH---HhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHH
Confidence            22222333555566888888876542   2210               00112267788999999999998877663

>PRK09354 recA recombinase A; Provisional

Probab=98.18  E-value=2e-05  Score=58.87  Aligned_cols=38  Identities=18%  Similarity=0.156  Sum_probs=28.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.+.|+|||||||||..++......+-.+..+...
T Consensus        60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E   97 (349)
T PRK09354         60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE   97 (349)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence            36899999999999999999886654455555555443

>PRK13695 putative NTPase; Provisional

Probab=98.18  E-value=3.3e-05  Score=52.17  Aligned_cols=30  Identities=30%  Similarity=0.453  Sum_probs=24.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      +.|+++|.|||||||+++.++..+...+..
T Consensus         1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~   30 (174)
T PRK13695          1 MKIGITGPPGVGKTTLVLKIAELLKEEGYK   30 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence            358999999999999999998776543444

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.17  E-value=6.3e-05  Score=60.09  Aligned_cols=29  Identities=31%  Similarity=0.418  Sum_probs=26.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +..++|+|++|+||||+|+.+++.+.+.+
T Consensus        46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~   74 (598)
T PRK09111         46 AQAFMLTGVRGVGKTTTARILARALNYEG   74 (598)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence            55799999999999999999999997654

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=98.17  E-value=1e-05  Score=63.19  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=32.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..++++.|+||+||||++.+++...-..+.++.+++.+.
T Consensus       263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE  301 (484)
T TIGR02655       263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE  301 (484)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence            468999999999999999999987655677777876654

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=98.17  E-value=5.3e-06  Score=56.15  Aligned_cols=41  Identities=27%  Similarity=0.266  Sum_probs=31.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYR   46 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~   46 (143)
                      ...++++||+|+|||.+|+.|++.+. ....+...+++..|.
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~   44 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS   44 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence            36899999999999999999999987 344445555555443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=98.16  E-value=2.5e-05  Score=55.32  Aligned_cols=39  Identities=18%  Similarity=0.283  Sum_probs=31.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~   44 (143)
                      ..+++++|.||+||||++.+++..+-.. +.++..++.+.
T Consensus        13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~   52 (242)
T cd00984          13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM   52 (242)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence            3589999999999999999998766544 77788887654

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK11823 DNA repair protein RadA; Provisional

Probab=98.15  E-value=5.2e-05  Score=58.63  Aligned_cols=39  Identities=26%  Similarity=0.193  Sum_probs=31.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..++++.|.||+||||++.+++..+...+.++.+++.++
T Consensus        80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee  118 (446)
T PRK11823         80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE  118 (446)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence            468999999999999999999987654566666666543

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.15  E-value=7.1e-05  Score=60.00  Aligned_cols=28  Identities=29%  Similarity=0.329  Sum_probs=25.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.|++.+.+.
T Consensus        38 pHA~LFtGP~GvGKTTLAriLAkaLnC~   65 (700)
T PRK12323         38 HHAYLFTGTRGVGKTTLSRILAKSLNCT   65 (700)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4678999999999999999999999863

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=98.14  E-value=1.5e-05  Score=60.73  Aligned_cols=31  Identities=32%  Similarity=0.427  Sum_probs=26.5

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +.-...|+|+|.+|||||||++.|++.++..
T Consensus       216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~  246 (399)
T PRK08099        216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT  246 (399)
T ss_pred             hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            4445689999999999999999999998654

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.14  E-value=6e-05  Score=58.36  Aligned_cols=39  Identities=21%  Similarity=0.271  Sum_probs=31.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYR   46 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~   46 (143)
                      -++++|+||+|||++++.++..+...  +.++..++.+++.
T Consensus       150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~  190 (450)
T PRK00149        150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT  190 (450)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence            48999999999999999999888654  4556666766553

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.13  E-value=6.6e-05  Score=58.90  Aligned_cols=29  Identities=17%  Similarity=0.124  Sum_probs=25.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .+..++|+|+||+||||+|+.+++.+.+.
T Consensus        35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~   63 (504)
T PRK14963         35 LGHAYLFSGPRGVGKTTTARLIAMAVNCS   63 (504)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            35678999999999999999999998754

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=98.13  E-value=6.6e-05  Score=51.28  Aligned_cols=26  Identities=35%  Similarity=0.469  Sum_probs=22.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..+.++.|+||+||||++..++..+-
T Consensus        32 g~l~~i~g~~g~GKT~~~~~l~~~~~   57 (193)
T PF13481_consen   32 GELTLIAGPPGSGKTTLALQLAAALA   57 (193)
T ss_dssp             TSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            35899999999999999999997663

>KOG0730|consensus

Probab=98.12  E-value=2.9e-05  Score=61.54  Aligned_cols=31  Identities=35%  Similarity=0.343  Sum_probs=26.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .|+-|++.|||||||||+|+.++..-+..++
T Consensus       467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFl  497 (693)
T KOG0730|consen  467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFL  497 (693)
T ss_pred             CCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence            4678999999999999999999988765554

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.12  E-value=5.7e-05  Score=53.40  Aligned_cols=40  Identities=20%  Similarity=0.235  Sum_probs=31.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +..++++.|.|||||||++.+++...-..+.++..++.+.
T Consensus        24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~   63 (234)
T PRK06067         24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN   63 (234)
T ss_pred             CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence            3578999999999999999999765433567777776653

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.12  E-value=3e-06  Score=56.01  Aligned_cols=37  Identities=24%  Similarity=0.473  Sum_probs=31.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +|.++|++||||||++..++..+...+.+..++..|.
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~   37 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP   37 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence            3789999999999999999999877788887777663

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH)

Probab=98.11  E-value=4.3e-06  Score=53.01  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      |++.|.+|+||||++..++..+...+.++.++..|.
T Consensus         2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~   37 (116)
T cd02034           2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP   37 (116)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence            789999999999999999999877778787787764

CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.11  E-value=9.2e-05  Score=59.29  Aligned_cols=29  Identities=21%  Similarity=0.265  Sum_probs=25.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +..++|+|++|+||||+|+.|++.+.+.+
T Consensus        38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~   66 (618)
T PRK14951         38 HHAYLFTGTRGVGKTTVSRILAKSLNCQG   66 (618)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            56789999999999999999999998643

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=98.11  E-value=2.4e-06  Score=53.37  Aligned_cols=23  Identities=35%  Similarity=0.557  Sum_probs=20.9

Q ss_pred             EEEEccCCCChhHHHHHHHHHHc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      |+|.|+||+|||++|+.|++.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~   23 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLL   23 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999998764

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.11  E-value=0.00011  Score=58.58  Aligned_cols=28  Identities=29%  Similarity=0.237  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~   62 (584)
T PRK14952         35 NHAYLFSGPRGCGKTSSARILARSLNCA   62 (584)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            5678999999999999999999998764

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.10  E-value=0.00019  Score=50.44  Aligned_cols=41  Identities=20%  Similarity=0.222  Sum_probs=31.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYRRK   48 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~~~   48 (143)
                      .+++.|++|+|||+|.+.++..+..  .+.++..++.+++...
T Consensus        36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~   78 (219)
T PF00308_consen   36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE   78 (219)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence            4789999999999999999987743  4666777777765443

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.10  E-value=7.6e-05  Score=59.98  Aligned_cols=28  Identities=25%  Similarity=0.262  Sum_probs=25.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~   65 (647)
T PRK07994         38 HHAYLFSGTRGVGKTTIARLLAKGLNCE   65 (647)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence            4568999999999999999999999763

>KOG0733|consensus

Probab=98.10  E-value=2.6e-05  Score=61.64  Aligned_cols=32  Identities=34%  Similarity=0.308  Sum_probs=27.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      +|.-|++-||||||||.||++++..++.+++.
T Consensus       222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~  253 (802)
T KOG0733|consen  222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLS  253 (802)
T ss_pred             CCCceeeeCCCCccHHHHHHHHhhhcCCceEe
Confidence            45679999999999999999999998776553

>TIGR00416 sms DNA repair protein RadA

Probab=98.10  E-value=2.8e-05  Score=60.21  Aligned_cols=38  Identities=21%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|.||+||||++.+++..+...+.++.+++.+
T Consensus        94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E  131 (454)
T TIGR00416        94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE  131 (454)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence            46899999999999999999988775555566666654

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PF13245 AAA_19: Part of AAA domain

Probab=98.09  E-value=4.5e-06  Score=48.97  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=18.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..+.++.|+|||||||++..+...+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578889999999995555555443

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.09  E-value=3.5e-06  Score=61.06  Aligned_cols=36  Identities=17%  Similarity=0.349  Sum_probs=28.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +|.++|.+||||||+++.|+..++..+  ..++..|++
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccc
Confidence            478999999999999999998876432  346677765

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK06921 hypothetical protein; Provisional

Probab=98.09  E-value=7.5e-05  Score=54.02  Aligned_cols=39  Identities=26%  Similarity=0.268  Sum_probs=31.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~   44 (143)
                      ...++|.|+||+|||+++..++..+... +..+..+...+
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~  156 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE  156 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence            4579999999999999999999988665 66666665543

>COG1855 ATPase (PilT family) [General function prediction only]

Probab=98.08  E-value=2.8e-06  Score=64.79  Aligned_cols=29  Identities=21%  Similarity=0.423  Sum_probs=25.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .-|++.|+||+||||+|++||+.+...|.
T Consensus       264 eGILIAG~PGaGKsTFaqAlAefy~~~Gk  292 (604)
T COG1855         264 EGILIAGAPGAGKSTFAQALAEFYASQGK  292 (604)
T ss_pred             cceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence            35899999999999999999999977765

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=98.08  E-value=3e-06  Score=62.61  Aligned_cols=29  Identities=21%  Similarity=0.348  Sum_probs=25.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .-|++.|+||+||||+++.|++.+++..+
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            35999999999999999999999987654

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=3.4e-05  Score=57.40  Aligned_cols=31  Identities=35%  Similarity=0.353  Sum_probs=26.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      +|+-|++.||||+|||-+|+++|....+.++
T Consensus       184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFI  214 (406)
T COG1222         184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFI  214 (406)
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCceEE
Confidence            5778999999999999999999988766554

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.08  E-value=2.2e-05  Score=61.38  Aligned_cols=29  Identities=34%  Similarity=0.462  Sum_probs=25.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-++|+|+||+|||++|+.+++.+...
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~  243 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR  243 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence            35679999999999999999999988654

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.08  E-value=0.00012  Score=58.49  Aligned_cols=28  Identities=21%  Similarity=0.272  Sum_probs=25.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|.|+||+||||+|+.|++.+.+.
T Consensus        38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~   65 (624)
T PRK14959         38 APAYLFSGTRGVGKTTIARIFAKALNCE   65 (624)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence            4579999999999999999999998753

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=98.07  E-value=5.2e-06  Score=56.75  Aligned_cols=41  Identities=34%  Similarity=0.380  Sum_probs=33.3

Q ss_pred             CCC-eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           4 FTP-LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~-~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +.| ..|-+.|+||||||++...+.+.+... ++..++..|-+
T Consensus        10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~   51 (202)
T COG0378          10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIY   51 (202)
T ss_pred             cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceee
Confidence            345 689999999999999999999998665 77777766544

>cd04163 Era Era subfamily

Probab=98.07  E-value=2.1e-05  Score=51.68  Aligned_cols=24  Identities=38%  Similarity=0.484  Sum_probs=21.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .+..|++.|.+||||||+.+.+..
T Consensus         2 ~~~~i~~~G~~g~GKttl~~~l~~   25 (168)
T cd04163           2 KSGFVAIVGRPNVGKSTLLNALVG   25 (168)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhC
Confidence            356799999999999999999864

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.06  E-value=0.0001  Score=58.91  Aligned_cols=28  Identities=25%  Similarity=0.245  Sum_probs=24.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~   65 (585)
T PRK14950         38 AHAYLFTGPRGVGKTSTARILAKAVNCT   65 (585)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4578999999999999999999998753

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.05  E-value=0.00015  Score=58.53  Aligned_cols=28  Identities=29%  Similarity=0.323  Sum_probs=25.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.|++.+.+.
T Consensus        38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~   65 (709)
T PRK08691         38 HHAYLLTGTRGVGKTTIARILAKSLNCE   65 (709)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            5689999999999999999999998764

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.05  E-value=7.1e-06  Score=56.74  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      -+|+++|++||||||+...|...+..
T Consensus         2 GlilI~GptGSGKTTll~~ll~~~~~   27 (198)
T cd01131           2 GLVLVTGPTGSGKSTTLAAMIDYINK   27 (198)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            47999999999999999999888753

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.04  E-value=0.00014  Score=56.18  Aligned_cols=40  Identities=18%  Similarity=0.251  Sum_probs=30.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYRR   47 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~~   47 (143)
                      -++++|+||+|||+++..++..+...  +.++..++.+++..
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~  173 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN  173 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence            48999999999999999999887443  34555666665443

>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family

Probab=98.04  E-value=0.00015  Score=51.24  Aligned_cols=110  Identities=15%  Similarity=0.143  Sum_probs=72.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .|.+|+|-|..||||+.+.+.|.+.+.-.++++..+..+.-.+.                .         ...+...+..
T Consensus        30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~----------------~---------~p~lwRfw~~   84 (230)
T TIGR03707        30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRER----------------T---------QWYFQRYVQH   84 (230)
T ss_pred             CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH----------------c---------ChHHHHHHHh
Confidence            47899999999999999999999998777776666533211111                0         1113334445


Q ss_pred             HhcCCeEEEEeCCchhHHH-------------------HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 LKNDGEVAIIDGTTATMEK-------------------RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~-------------------r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +-..|.+.|+|.+-+..-.                   -..+.+ ++...|+.++=+++..+.++-.+|..+|..
T Consensus        85 lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr-~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~  158 (230)
T TIGR03707        85 LPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFER-MLVRDGIHLFKYWLSVSREEQLRRFKARID  158 (230)
T ss_pred             CCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHHCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence            5445777777766533211                   112344 555678988888888999998888877653

Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=98.04  E-value=0.00023  Score=49.88  Aligned_cols=29  Identities=21%  Similarity=0.187  Sum_probs=24.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ..++.+.|+||||||+++..++......+
T Consensus        19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~   47 (226)
T cd01393          19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG   47 (226)
T ss_pred             CcEEEEeCCCCCChhHHHHHHHHHhhccc
Confidence            46899999999999999999987654333

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.04  E-value=3.8e-06  Score=63.84  Aligned_cols=29  Identities=38%  Similarity=0.452  Sum_probs=25.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-|+++|+||+|||++|+.++..++..
T Consensus       164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~  192 (389)
T PRK03992        164 PPKGVLLYGPPGTGKTLLAKAVAHETNAT  192 (389)
T ss_pred             CCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence            46679999999999999999999987654

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=98.04  E-value=3.7e-05  Score=56.42  Aligned_cols=36  Identities=31%  Similarity=0.481  Sum_probs=30.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      ++.+|+++||.|||||-+|-.|+++++.     .++|.|..
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~-----eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGG-----EIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCC-----cEEecchh
Confidence            5789999999999999999999999764     56666653

>PRK04328 hypothetical protein; Provisional

Probab=98.04  E-value=6.3e-05  Score=53.86  Aligned_cols=39  Identities=18%  Similarity=0.203  Sum_probs=30.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +..++++.|+||||||++|.+++...-..+.++.+++.+
T Consensus        22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e   60 (249)
T PRK04328         22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE   60 (249)
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence            356899999999999999999886543446777777654

>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional

Probab=98.04  E-value=6.1e-06  Score=62.24  Aligned_cols=39  Identities=28%  Similarity=0.345  Sum_probs=35.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ++.+|.++|.|||||||+...|...|...|+++.++..+
T Consensus       204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~  242 (366)
T PRK14489        204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS  242 (366)
T ss_pred             CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence            456999999999999999999999999889988888654

>PF05729 NACHT: NACHT domain

Probab=98.04  E-value=5.1e-06  Score=55.04  Aligned_cols=27  Identities=33%  Similarity=0.505  Sum_probs=23.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ++++.|.||+||||+++.++..+....
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~~~~~~   28 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQLAEEE   28 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence            789999999999999999998875544

>PLN03025 replication factor C subunit; Provisional

Probab=98.04  E-value=5.6e-05  Score=55.95  Aligned_cols=25  Identities=32%  Similarity=0.305  Sum_probs=22.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .++|.|+||+||||+|..+++.+..
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l~~   60 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHELLG   60 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhc
Confidence            4789999999999999999998743

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.04  E-value=9e-05  Score=55.16  Aligned_cols=112  Identities=13%  Similarity=0.146  Sum_probs=58.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh-hhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK-HLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      +..++|+|++|+||+|+|..+++.+.+....... .++.=..+ .+.....+|++.....+...   .+....+.++.+.
T Consensus        22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~-~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~---~i~id~iR~l~~~   97 (328)
T PRK05707         22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG-ACGSCKGCQLLRAGSHPDNFVLEPEEADK---TIKVDQVRELVSF   97 (328)
T ss_pred             ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCCEEEEeccCCCC---CCCHHHHHHHHHH
Confidence            5679999999999999999999999764321110 11110011 12222334443221111000   0001112222222


Q ss_pred             H-----hcCCeEEEEeCC-chhHHHHHHHHHHHHhhcCCEEEEE
Q psy2713          85 L-----KNDGEVAIIDGT-TATMEKRKQIHDYFARKMGFKVLFV  122 (143)
Q Consensus        85 l-----~~~~~~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~~v  122 (143)
                      +     ..+..++|+|.. ..+......+.+ .+++..-...+|
T Consensus        98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK-~LEEPp~~~~fi  140 (328)
T PRK05707         98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLK-SLEEPSGDTVLL  140 (328)
T ss_pred             HhhccccCCCeEEEECChhhCCHHHHHHHHH-HHhCCCCCeEEE
Confidence            2     234566777665 356677778888 888865555555

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.04  E-value=9e-06  Score=58.02  Aligned_cols=41  Identities=20%  Similarity=0.255  Sum_probs=35.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ..++|.|.||+|||+++..++..+...+..+.+++..++..
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~  140 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS  140 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence            47899999999999999999999977788887777766543

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.03  E-value=3.8e-05  Score=57.71  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=29.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .|..++|.|+||+|||.+|+.+++.++..   ...++..+
T Consensus       147 ~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~e  183 (413)
T PLN00020        147 VPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAGE  183 (413)
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHHH
Confidence            47889999999999999999999998653   34555543

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.03  E-value=9.5e-05  Score=58.95  Aligned_cols=39  Identities=21%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYR   46 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~   46 (143)
                      .++|+|.+|+|||+|+..++..+..  .+.++..++.+++.
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~  356 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT  356 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence            3899999999999999999988743  46677777776654

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.02  E-value=1e-05  Score=56.89  Aligned_cols=40  Identities=13%  Similarity=0.186  Sum_probs=32.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      ...++++|+||+|||++|+.+++.....+.....++....
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            3578999999999999999999887555666677766543

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.02  E-value=0.00015  Score=57.24  Aligned_cols=27  Identities=30%  Similarity=0.326  Sum_probs=24.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|+||+||||+|+.+++.+.+
T Consensus        38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c   64 (527)
T PRK14969         38 HHAYLFTGTRGVGKTTLARILAKSLNC   64 (527)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            467899999999999999999999875

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=98.02  E-value=9.7e-06  Score=51.86  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      +.+|.++-+-|+||+|||.+++.||+.+=..|.++..+
T Consensus        50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V   87 (127)
T PF06309_consen   50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV   87 (127)
T ss_pred             CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence            56788999999999999999999999864556666555

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=98.02  E-value=6.4e-06  Score=62.95  Aligned_cols=31  Identities=32%  Similarity=0.365  Sum_probs=26.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      ..-++|.|+|||||||+|+.|++.++..++.
T Consensus       108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~  138 (412)
T PRK05342        108 KSNILLIGPTGSGKTLLAQTLARILDVPFAI  138 (412)
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence            3569999999999999999999998766543

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.02  E-value=0.00013  Score=47.93  Aligned_cols=93  Identities=15%  Similarity=0.159  Sum_probs=51.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      ..++.+.|++||||||+.+.|+..+.   ....-+..+...        ... |-+.-+.+..  +.     +. +...+
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~--------~i~-~~~~lS~G~~--~r-----v~-laral   85 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV--------KIG-YFEQLSGGEK--MR-----LA-LAKLL   85 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE--------EEE-EEccCCHHHH--HH-----HH-HHHHH
Confidence            45889999999999999999976542   112222222110        001 1010111111  11     11 11222


Q ss_pred             hcCCeEEEEeCCc--hhHHHHHHHHHHHHhhcCCEE
Q psy2713          86 KNDGEVAIIDGTT--ATMEKRKQIHDYFARKMGFKV  119 (143)
Q Consensus        86 ~~~~~~vi~d~~~--~~~~~r~~~~~~~~~~~~~~~  119 (143)
                      ......+++|-++  .+...++.+.+ .+++.+..+
T Consensus        86 ~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~~~ti  120 (144)
T cd03221          86 LENPNLLLLDEPTNHLDLESIEALEE-ALKEYPGTV  120 (144)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHH-HHHHcCCEE
Confidence            2356789999875  66778888888 888765433

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.02  E-value=4.8e-06  Score=62.68  Aligned_cols=31  Identities=35%  Similarity=0.351  Sum_probs=26.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .|.-+++.|+||+|||++|+.+++.++..++
T Consensus       155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~  185 (364)
T TIGR01242       155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFI  185 (364)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence            3567999999999999999999998765543

Many proteins may score above the trusted cutoff because an internal

>KOG0781|consensus

Probab=98.01  E-value=3.2e-05  Score=59.43  Aligned_cols=48  Identities=21%  Similarity=0.386  Sum_probs=43.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE   51 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~   51 (143)
                      ..|++|.|||..|+||||--.+|+-+|....+++-+..+|.+|....+
T Consensus       376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvE  423 (587)
T KOG0781|consen  376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVE  423 (587)
T ss_pred             CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHH
Confidence            468999999999999999999999999988999999999999887544

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.01  E-value=5.2e-06  Score=64.66  Aligned_cols=32  Identities=25%  Similarity=0.349  Sum_probs=27.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      .|.-|++.|+||+|||++|+.++..++...+.
T Consensus       258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~  289 (489)
T CHL00195        258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR  289 (489)
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            46789999999999999999999998765443

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.01  E-value=5.7e-06  Score=57.55  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +..++.++|||||||||+.+.|..
T Consensus        27 ~Gevv~iiGpSGSGKSTlLRclN~   50 (240)
T COG1126          27 KGEVVVIIGPSGSGKSTLLRCLNG   50 (240)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHC
Confidence            346899999999999999999973

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=98.01  E-value=5.1e-05  Score=53.34  Aligned_cols=40  Identities=28%  Similarity=0.205  Sum_probs=29.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~   44 (143)
                      +..++++.|+||||||+++.+++...-.. +.++..++.+.
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee   58 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE   58 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence            34689999999999999999988554344 67777776643

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=98.01  E-value=0.00019  Score=51.49  Aligned_cols=39  Identities=18%  Similarity=0.210  Sum_probs=32.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~   44 (143)
                      ..++++.|.||+|||+++..++..+... +.++.+|+.+.
T Consensus        19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm   58 (259)
T PF03796_consen   19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM   58 (259)
T ss_dssp             T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS
T ss_pred             CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence            3599999999999999999999877655 58888888753

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>KOG0733|consensus

Probab=98.00  E-value=2.5e-05  Score=61.67  Aligned_cols=30  Identities=33%  Similarity=0.309  Sum_probs=25.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      |.-|+|+||||||||-+|+++|..-+..++
T Consensus       545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi  574 (802)
T KOG0733|consen  545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI  574 (802)
T ss_pred             CCceEEeCCCCccHHHHHHHHhhhccCceE
Confidence            667999999999999999999987655443

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=98.00  E-value=8.9e-06  Score=52.01  Aligned_cols=28  Identities=32%  Similarity=0.306  Sum_probs=24.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..+|++.|.-||||||+++.+++.++.
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~   41 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARALGI   41 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            3469999999999999999999999854

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.99  E-value=0.00021  Score=54.57  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=25.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|+||+||||+|+.+++.+.+.
T Consensus        38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~   65 (397)
T PRK14955         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (397)
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            5579999999999999999999999764

>KOG0738|consensus

Probab=97.99  E-value=9.1e-05  Score=55.80  Aligned_cols=28  Identities=36%  Similarity=0.332  Sum_probs=23.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +-|+|.||||+|||-||++++..-+..+
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~tTF  273 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECGTTF  273 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhcCeE
Confidence            3589999999999999999998866443

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.99  E-value=8.6e-06  Score=49.00  Aligned_cols=34  Identities=26%  Similarity=0.348  Sum_probs=28.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      +++++|.+|+||||++..++..+...+.+...+.
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~   34 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID   34 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence            4788999999999999999999977777666553

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>CHL00176 ftsH cell division protein; Validated

Probab=97.99  E-value=0.00023  Score=57.36  Aligned_cols=30  Identities=37%  Similarity=0.401  Sum_probs=25.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      .|.-+++.|+||+|||++|+.++...+...
T Consensus       215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~  244 (638)
T CHL00176        215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPF  244 (638)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            356799999999999999999998875443

>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional

Probab=97.99  E-value=9.7e-06  Score=57.25  Aligned_cols=35  Identities=20%  Similarity=0.303  Sum_probs=32.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      .+|.++|.+||||||++..|+++|...++++.++.
T Consensus         2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK   36 (229)
T PRK14494          2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK   36 (229)
T ss_pred             eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence            47999999999999999999999988888888884

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.99  E-value=0.00024  Score=55.53  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=24.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|++|+||||+|+.+++.+.+
T Consensus        38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c   64 (486)
T PRK14953         38 SHAYIFAGPRGTGKTTIARILAKVLNC   64 (486)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            457899999999999999999999875

>KOG1969|consensus

Probab=97.99  E-value=6.9e-06  Score=65.78  Aligned_cols=42  Identities=26%  Similarity=0.309  Sum_probs=33.6

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +++.++.++||+||-||||+|.-+|+..   |+++.-+++.+-|.
T Consensus       323 RP~kKilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt  364 (877)
T KOG1969|consen  323 RPPKKILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERT  364 (877)
T ss_pred             CCccceEEeecCCCCChhHHHHHHHHhc---CceEEEeccccccc
Confidence            4566899999999999999999999875   56666777655443

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=97.98  E-value=0.00021  Score=58.01  Aligned_cols=28  Identities=21%  Similarity=0.254  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~   67 (725)
T PRK07133         40 SHAYLFSGPRGTGKTSVAKIFANALNCS   67 (725)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            5678999999999999999999998764

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=97.98  E-value=0.00021  Score=59.08  Aligned_cols=28  Identities=29%  Similarity=0.230  Sum_probs=25.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|.|++|+||||+|+.|++.|.+.
T Consensus        37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~   64 (824)
T PRK07764         37 NHAYLFSGPRGCGKTSSARILARSLNCV   64 (824)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            4568999999999999999999999764

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.98  E-value=6.7e-06  Score=59.07  Aligned_cols=27  Identities=26%  Similarity=0.283  Sum_probs=23.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +.+++++|++||||||+++.++..+..
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            458999999999999999999988763

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=97.98  E-value=5.8e-06  Score=62.96  Aligned_cols=30  Identities=40%  Similarity=0.411  Sum_probs=25.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      .|.-+++.|+||+|||++|+.++..++...
T Consensus       178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~f  207 (398)
T PTZ00454        178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATF  207 (398)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence            467899999999999999999998876543

>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family

Probab=97.98  E-value=0.00044  Score=48.54  Aligned_cols=39  Identities=18%  Similarity=0.166  Sum_probs=30.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..++++.|.||+|||++|.+++...-..+..+..++.+.
T Consensus        16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~   54 (224)
T TIGR03880        16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE   54 (224)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            468999999999999999999866434466677776643

This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=97.97  E-value=0.00033  Score=52.31  Aligned_cols=28  Identities=21%  Similarity=0.275  Sum_probs=24.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|+||+||||+|+.+++.+.+.
T Consensus        36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~   63 (355)
T TIGR02397        36 AHAYLFSGPRGTGKTSIARIFAKALNCQ   63 (355)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            5678999999999999999999998643

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=97.97  E-value=8.5e-06  Score=59.73  Aligned_cols=27  Identities=33%  Similarity=0.354  Sum_probs=23.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++++|+||+||||+|+.+++.++.
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~   56 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGV   56 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456899999999999999999998753

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=97.97  E-value=0.00021  Score=48.83  Aligned_cols=27  Identities=26%  Similarity=0.292  Sum_probs=24.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|.|++|+||||+|+.+++.+..
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~   40 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKALLC   40 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            578999999999999999999999864

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.97  E-value=9.9e-06  Score=62.89  Aligned_cols=44  Identities=27%  Similarity=0.298  Sum_probs=35.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc-cCC-CCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTD-HKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~-~~~~~~~~d~~~~~   48 (143)
                      ++.+++|+|++||||||.+.+|+..+. ..+ .++.++..|.++..
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Rig  300 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIG  300 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchh
Confidence            357999999999999999999998773 333 46778888877544

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=97.96  E-value=0.00019  Score=54.87  Aligned_cols=39  Identities=21%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYR   46 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~   46 (143)
                      .++++|+||+|||++++.++..+...  +..+..++.+++.
T Consensus       138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~  178 (405)
T TIGR00362       138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT  178 (405)
T ss_pred             eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence            58899999999999999999887543  4556666766544

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=97.96  E-value=1.2e-05  Score=54.69  Aligned_cols=34  Identities=24%  Similarity=0.361  Sum_probs=27.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      +++++|..||||||+.+.+.+ ....+.+..++..
T Consensus         2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~n   35 (178)
T PF02492_consen    2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVN   35 (178)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEEC
T ss_pred             EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEc
Confidence            789999999999999999997 4455677777644

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=97.96  E-value=0.00026  Score=56.33  Aligned_cols=28  Identities=25%  Similarity=0.252  Sum_probs=25.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~   65 (563)
T PRK06647         38 ANAYIFSGPRGVGKTSSARAFARCLNCV   65 (563)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence            5679999999999999999999998753

>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]

Probab=97.96  E-value=0.00042  Score=46.20  Aligned_cols=31  Identities=32%  Similarity=0.428  Sum_probs=26.2

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      |.=.+.|.+.|+-.||||||+++|+..++..
T Consensus         5 p~F~K~VailG~ESsGKStLv~kLA~~fnt~   35 (187)
T COG3172           5 PFFVKTVAILGGESSGKSTLVNKLANIFNTT   35 (187)
T ss_pred             hhhheeeeeecCcccChHHHHHHHHHHhCCC
Confidence            3334689999999999999999999998753

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.96  E-value=8.1e-06  Score=55.16  Aligned_cols=30  Identities=30%  Similarity=0.255  Sum_probs=20.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..+.++++.|++|+||||+.+.+.+.+...
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            346899999999999999999999877544

>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase

Probab=97.95  E-value=0.00024  Score=55.40  Aligned_cols=111  Identities=14%  Similarity=0.126  Sum_probs=73.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      ..|.+|+|-|..||||++..+.|.+.+.-.|+++..+..+.-.+.      ..+                   .+...+.
T Consensus        38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~------~~~-------------------flwRfw~   92 (493)
T TIGR03708        38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEER------ERP-------------------PMWRFWR   92 (493)
T ss_pred             CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHh------cCc-------------------HHHHHHH
Confidence            357899999999999999999999999888887766644322111      011                   1233334


Q ss_pred             HHhcCCeEEEEeCCchhHHH-------------------HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATMEK-------------------RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~-------------------r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+-..|.++|+|-+-+..-.                   -..+.+ ++...|+.++=+++.++.++-.+|-..|..
T Consensus        93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~-~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~  167 (493)
T TIGR03708        93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFER-MLADDGALILKFWLHLSKKQQKERLKKLEK  167 (493)
T ss_pred             hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHH-HHHHCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence            44345677777665432211                   112344 555668988888889999998888877753

Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=97.95  E-value=0.00026  Score=52.14  Aligned_cols=27  Identities=26%  Similarity=0.330  Sum_probs=23.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .|.+++++|+||+||||+++.+++.++
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~   68 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVG   68 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            367888899999999999999998864

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.95  E-value=0.00044  Score=47.01  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      ..++.+.|++||||||+.+.+.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4689999999999999999885

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=97.95  E-value=0.0002  Score=56.93  Aligned_cols=28  Identities=18%  Similarity=0.188  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~   65 (559)
T PRK05563         38 SHAYLFSGPRGTGKTSAAKIFAKAVNCL   65 (559)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            5678999999999999999999998764

>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family

Probab=97.95  E-value=0.00027  Score=50.98  Aligned_cols=110  Identities=15%  Similarity=0.127  Sum_probs=72.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .|.+|+|-|..||||..+.+.|.+.+.-.++++..+....-.+.      .                   ...+...+..
T Consensus        55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~------~-------------------~p~lWRfw~~  109 (264)
T TIGR03709        55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL------D-------------------HDFLWRIHKA  109 (264)
T ss_pred             CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH------c-------------------CchHHHHHHh
Confidence            37899999999999999999999998777776666533221111      0                   1113334444


Q ss_pred             HhcCCeEEEEeCCchhHHH-------------------HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 LKNDGEVAIIDGTTATMEK-------------------RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~-------------------r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +-..|.+.|+|.+-+..-.                   -..+.. ++...|+.++=+++..+.++-.+|-..|..
T Consensus       110 lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr-~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~  183 (264)
T TIGR03709       110 LPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFER-YLTENGTTILKFFLHISKEEQKKRFLARLD  183 (264)
T ss_pred             CCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHH-HHHHCCcEEEEEEEeCCHHHHHHHHHHHhc
Confidence            5445777777765432211                   112333 555668888888888999998888877753

Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.95  E-value=0.00017  Score=49.50  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=22.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +..+++++|+|||||||+.+.|....
T Consensus        27 ~Gef~fl~GpSGAGKSTllkLi~~~e   52 (223)
T COG2884          27 KGEFVFLTGPSGAGKSTLLKLIYGEE   52 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhh
Confidence            44689999999999999999998654

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=7.7e-06  Score=65.38  Aligned_cols=34  Identities=26%  Similarity=0.375  Sum_probs=29.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      .+..++.++||||+|||++++.+|+.++..+++.
T Consensus       348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~  381 (782)
T COG0466         348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI  381 (782)
T ss_pred             CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence            3456899999999999999999999998876643

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=97.94  E-value=8.3e-06  Score=62.74  Aligned_cols=31  Identities=35%  Similarity=0.366  Sum_probs=26.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .|..++|+|+||+|||++|+.++..+...++
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi  246 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFL  246 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            4567899999999999999999998865543

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.94  E-value=7.2e-06  Score=61.64  Aligned_cols=28  Identities=29%  Similarity=0.284  Sum_probs=24.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      -.+|.||||+||||+|+.|+..++..+.
T Consensus        50 SmIl~GPPG~GKTTlA~liA~~~~~~f~   77 (436)
T COG2256          50 SMILWGPPGTGKTTLARLIAGTTNAAFE   77 (436)
T ss_pred             eeEEECCCCCCHHHHHHHHHHhhCCceE
Confidence            4689999999999999999998876543

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=97.94  E-value=1e-05  Score=60.10  Aligned_cols=27  Identities=33%  Similarity=0.315  Sum_probs=24.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++++|+||+||||+|+.+++.++.
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~   77 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGV   77 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence            457899999999999999999999864

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=97.93  E-value=0.0002  Score=53.81  Aligned_cols=27  Identities=22%  Similarity=0.229  Sum_probs=24.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|++|+||||+|..+++.+.+
T Consensus        45 ~ha~L~~G~~G~GKttlA~~lA~~Llc   71 (351)
T PRK09112         45 HHALLFEGPEGIGKATLAFHLANHILS   71 (351)
T ss_pred             CeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence            567999999999999999999999866

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.93  E-value=1.1e-05  Score=63.40  Aligned_cols=27  Identities=26%  Similarity=0.365  Sum_probs=24.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..+++++|||||||||..+.|++.++.
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            469999999999999999999999864

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=97.93  E-value=0.00047  Score=49.08  Aligned_cols=29  Identities=31%  Similarity=0.496  Sum_probs=25.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      |.-++++|++||||||+...|...+...+
T Consensus        13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f   41 (241)
T PF04665_consen   13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKF   41 (241)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcccC
Confidence            45789999999999999999998876655

This is thought to be an ATPase involved in viral DNA packaging [].

>TIGR00101 ureG urease accessory protein UreG

Probab=97.93  E-value=1.8e-05  Score=54.79  Aligned_cols=37  Identities=30%  Similarity=0.398  Sum_probs=28.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      |..|.++|++||||||+.+.+.+.+... ....++..|
T Consensus         1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d   37 (199)
T TIGR00101         1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITND   37 (199)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCC
Confidence            5689999999999999999999887542 334444444

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=97.92  E-value=0.00024  Score=53.60  Aligned_cols=29  Identities=28%  Similarity=0.304  Sum_probs=25.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .+..++|+|++|+||+|+|..+++.+.+.
T Consensus        40 l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~   68 (365)
T PRK07471         40 LHHAWLIGGPQGIGKATLAYRMARFLLAT   68 (365)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence            35679999999999999999999998654

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.92  E-value=8.3e-06  Score=58.79  Aligned_cols=27  Identities=33%  Similarity=0.341  Sum_probs=23.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .-|++.|+||+|||++|+.|++.++..
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~lg~~   48 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKRDRP   48 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            457899999999999999999877543

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.91  E-value=4.8e-05  Score=62.23  Aligned_cols=29  Identities=34%  Similarity=0.406  Sum_probs=24.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-|+|.|+||||||++|+.++..++..
T Consensus       486 ~~~giLL~GppGtGKT~lakalA~e~~~~  514 (733)
T TIGR01243       486 PPKGVLLFGPPGTGKTLLAKAVATESGAN  514 (733)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            35568999999999999999999987643

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.91  E-value=0.00015  Score=55.53  Aligned_cols=44  Identities=27%  Similarity=0.305  Sum_probs=32.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~~~~   48 (143)
                      +..+|.|+|++|+||||+...|+.++-  .......++..|.++..
T Consensus       190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig  235 (420)
T PRK14721        190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG  235 (420)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh
Confidence            356899999999999999999997642  12245566777776654

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=97.90  E-value=4.3e-05  Score=51.18  Aligned_cols=21  Identities=38%  Similarity=0.445  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |++.|++||||||+.+.+...
T Consensus         2 i~~~G~~~~GKTsl~~~l~~~   22 (167)
T cd04161           2 LLTVGLDNAGKTTLVSALQGE   22 (167)
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998754

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.90  E-value=3.4e-06  Score=54.16  Aligned_cols=27  Identities=44%  Similarity=0.561  Sum_probs=19.7

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      |++.|+||+||||+++.|++.++..+.
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~   28 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFK   28 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCcee
Confidence            789999999999999999999876543

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=97.90  E-value=2.1e-05  Score=56.49  Aligned_cols=44  Identities=23%  Similarity=0.175  Sum_probs=37.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~   49 (143)
                      ..-+++.|+||+|||++|.+|+..+-..|+++-.+...++....
T Consensus       105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L  148 (254)
T COG1484         105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL  148 (254)
T ss_pred             CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence            45789999999999999999999888778999999887765553

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=97.90  E-value=1.2e-05  Score=63.52  Aligned_cols=28  Identities=25%  Similarity=0.396  Sum_probs=25.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..+++|+||||+||||||+.|++.+..
T Consensus       102 ~~~IL~LvGPpG~GKSsLa~~la~~le~  129 (644)
T PRK15455        102 KKQILYLLGPVGGGKSSLAERLKSLMER  129 (644)
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHHHh
Confidence            4579999999999999999999998754

>PRK06851 hypothetical protein; Provisional

Probab=97.90  E-value=1.7e-05  Score=59.69  Aligned_cols=38  Identities=18%  Similarity=0.264  Sum_probs=33.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      -..++++.|+||+||||+.+.+++.+...|+++.++.+
T Consensus       213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC  250 (367)
T PRK06851        213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC  250 (367)
T ss_pred             cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence            45789999999999999999999999888888877744

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=97.90  E-value=2.1e-05  Score=54.73  Aligned_cols=39  Identities=28%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      +..+.+|.++|++||||||+...+.+.+.. +.+..++..
T Consensus        19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~   57 (207)
T TIGR00073        19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEG   57 (207)
T ss_pred             hcCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEEC
Confidence            345789999999999999999999987653 234444443

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX)

Probab=97.89  E-value=1e-05  Score=61.69  Aligned_cols=29  Identities=34%  Similarity=0.429  Sum_probs=25.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +..|+|.|+||+|||++|+.|++.++..+
T Consensus       116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf  144 (413)
T TIGR00382       116 KSNILLIGPTGSGKTLLAQTLARILNVPF  144 (413)
T ss_pred             CceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence            35799999999999999999998886443

A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=97.89  E-value=7.3e-06  Score=66.20  Aligned_cols=34  Identities=24%  Similarity=0.323  Sum_probs=29.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .+|.+.|++||||||+|+.|+++|+..+++++.+
T Consensus       443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~  476 (661)
T PRK11860        443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGAL  476 (661)
T ss_pred             ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHh
Confidence            4799999999999999999999998877655443

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.89  E-value=1.2e-05  Score=50.09  Aligned_cols=21  Identities=38%  Similarity=0.365  Sum_probs=19.7

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .++.+.|++||||||+++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            689999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein

Probab=97.88  E-value=0.00011  Score=52.00  Aligned_cols=109  Identities=14%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      |.+|+|.|..||||+.+.+.|.+.+.-.++++..+....-.+.      ..++                   +...+..+
T Consensus        31 ~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~------~~p~-------------------lwRfw~~l   85 (228)
T PF03976_consen   31 PVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEEL------RRPF-------------------LWRFWRAL   85 (228)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHH------TS-T-------------------THHHHTTS
T ss_pred             cEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHc------CCCc-------------------HHHHHHhC
Confidence            5899999999999999999998887666666655533221111      0111                   12222333


Q ss_pred             hcCCeEEEEeCCchhHH-------------------HHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          86 KNDGEVAIIDGTTATME-------------------KRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~-------------------~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      -..|.++|+|.+-+..-                   .-..+.+ ++...|+.++=+++..+.++-.+|...|..
T Consensus        86 P~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr-~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~  158 (228)
T PF03976_consen   86 PARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFER-MLADDGTLIIKFFLHISKKEQKKRLKEREE  158 (228)
T ss_dssp             --TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHH-HHHHTTEEEEEEEEE--HHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHCCCeEEEEEEEeCHHHHHHHHHHHhc
Confidence            34577777776543221                   1112333 444568888888888888888888777643

The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=97.88  E-value=0.0003  Score=52.25  Aligned_cols=114  Identities=10%  Similarity=0.103  Sum_probs=61.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh-hhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK-HLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      -+..++|.|++|+||+++|..+++.+.+....... .++.=..+ .+.....+|++-....++..    +....+.++.+
T Consensus        23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~-~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~----I~id~iR~l~~   97 (325)
T PRK06871         23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ-PCGQCHSCHLFQAGNHPDFHILEPIDNKD----IGVDQVREINE   97 (325)
T ss_pred             cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCCEEEEccccCCC----CCHHHHHHHHH
Confidence            35789999999999999999999999764322111 11110011 12223345553221111110    11111223333


Q ss_pred             HH-----hcCCeEEEEeCC-chhHHHHHHHHHHHHhhcCCEEEEEEe
Q psy2713          84 WL-----KNDGEVAIIDGT-TATMEKRKQIHDYFARKMGFKVLFVEL  124 (143)
Q Consensus        84 ~l-----~~~~~~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~~v~~  124 (143)
                      .+     .....++|+|.. ..+......+.+ .+++..-.++++-+
T Consensus        98 ~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLK-tLEEPp~~~~fiL~  143 (325)
T PRK06871         98 KVSQHAQQGGNKVVYIQGAERLTEAAANALLK-TLEEPRPNTYFLLQ  143 (325)
T ss_pred             HHhhccccCCceEEEEechhhhCHHHHHHHHH-HhcCCCCCeEEEEE
Confidence            22     223456767654 456667778888 88887666655544

>PHA03132 thymidine kinase; Provisional

Probab=97.88  E-value=0.00085  Score=53.30  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=23.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .++|+|-|.-||||||+++.|++.+
T Consensus       257 ~~fIv~EGidGsGKTTlik~L~e~l  281 (580)
T PHA03132        257 ACFLFLEGVMGVGKTTLLNHMRGIL  281 (580)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999999987

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.88  E-value=0.00044  Score=55.55  Aligned_cols=28  Identities=21%  Similarity=0.214  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~   65 (620)
T PRK14954         38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ   65 (620)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4569999999999999999999999774

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.88  E-value=0.00029  Score=56.67  Aligned_cols=27  Identities=26%  Similarity=0.241  Sum_probs=24.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..++|+|++|+||||+|+.+++.+.+.
T Consensus        39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~   65 (620)
T PRK14948         39 PAYLFTGPRGTGKTSSARILAKSLNCL   65 (620)
T ss_pred             ceEEEECCCCCChHHHHHHHHHHhcCC
Confidence            468999999999999999999999764

>PRK00089 era GTPase Era; Reviewed

Probab=97.88  E-value=7e-05  Score=54.65  Aligned_cols=24  Identities=42%  Similarity=0.595  Sum_probs=21.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      ++..+|.+.|.|||||||+.+.|.
T Consensus         3 ~~~g~V~iiG~pn~GKSTLin~L~   26 (292)
T PRK00089          3 FKSGFVAIVGRPNVGKSTLLNALV   26 (292)
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHh
Confidence            456789999999999999999986

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=97.88  E-value=0.00025  Score=48.00  Aligned_cols=26  Identities=23%  Similarity=0.234  Sum_probs=22.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .++.-|+++|.+|+||||+...|...
T Consensus        16 ~~~~~i~ivG~~~~GKStlin~l~~~   41 (179)
T TIGR03598        16 DDGPEIAFAGRSNVGKSSLINALTNR   41 (179)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence            44567899999999999999998753

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.88  E-value=0.00019  Score=48.06  Aligned_cols=25  Identities=36%  Similarity=0.352  Sum_probs=21.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~   50 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLY   50 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998554

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.87  E-value=0.00043  Score=48.32  Aligned_cols=27  Identities=33%  Similarity=0.306  Sum_probs=22.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .++++.|++|+|||.+|-.|++.++..
T Consensus         2 ~v~~i~GpT~tGKt~~ai~lA~~~g~p   28 (233)
T PF01745_consen    2 KVYLIVGPTGTGKTALAIALAQKTGAP   28 (233)
T ss_dssp             EEEEEE-STTSSHHHHHHHHHHHH--E
T ss_pred             cEEEEECCCCCChhHHHHHHHHHhCCC
Confidence            589999999999999999999998764

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=97.87  E-value=0.00033  Score=52.14  Aligned_cols=29  Identities=24%  Similarity=0.228  Sum_probs=25.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .+..++|.|++|+||||+|..+++.+.+.
T Consensus        20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~   48 (325)
T PRK08699         20 RPNAWLFAGKKGIGKTAFARFAAQALLCE   48 (325)
T ss_pred             cceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence            35679999999999999999999998764

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=97.87  E-value=0.00036  Score=53.24  Aligned_cols=29  Identities=24%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .+..++|.|+||+||||+|+.+++.+.+.
T Consensus        35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~   63 (394)
T PRK07940         35 MTHAWLFTGPPGSGRSVAARAFAAALQCT   63 (394)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            35679999999999999999999998764

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=97.87  E-value=0.00037  Score=54.10  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=25.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|+||+||||+|+.+++.+.+.
T Consensus        39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~   66 (451)
T PRK06305         39 AHAYLFSGIRGTGKTTLARIFAKALNCQ   66 (451)
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            5678999999999999999999998654

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=97.86  E-value=1.4e-05  Score=52.84  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+|+|+||+||||+|..|.++
T Consensus        15 ~gvLi~G~sG~GKStlal~L~~~   37 (149)
T cd01918          15 IGVLITGPSGIGKSELALELIKR   37 (149)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            56999999999999999998876

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PRK06851 hypothetical protein; Provisional

Probab=97.85  E-value=2.5e-05  Score=58.72  Aligned_cols=36  Identities=19%  Similarity=0.268  Sum_probs=30.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ...+++|.|+||+||||+.+++.+.+...+.++..+
T Consensus        29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~   64 (367)
T PRK06851         29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL   64 (367)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            457899999999999999999999886666665555

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=97.85  E-value=1.7e-05  Score=62.06  Aligned_cols=30  Identities=37%  Similarity=0.379  Sum_probs=25.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      .|.-+++.|+||+|||++|+.|+..++...
T Consensus        87 ~~~giLL~GppGtGKT~la~alA~~~~~~~  116 (495)
T TIGR01241        87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPF  116 (495)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence            356799999999999999999998875543

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK08760 replicative DNA helicase; Provisional

Probab=97.84  E-value=0.00038  Score=54.33  Aligned_cols=39  Identities=28%  Similarity=0.414  Sum_probs=31.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~   44 (143)
                      ..++++.|.||+|||+++..++...- ..+..+.+|+.+.
T Consensus       229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM  268 (476)
T PRK08760        229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM  268 (476)
T ss_pred             CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence            36899999999999999999997663 3366777887754

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=97.83  E-value=1.8e-05  Score=54.20  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=23.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ...++++|++||||||+.+.|...+.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~   50 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIP   50 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            46899999999999999999987764

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>KOG0739|consensus

Probab=97.83  E-value=9.2e-05  Score=54.18  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .-|++.||||.|||+||+.++...+.
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnS  192 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANS  192 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence            46999999999999999999977553

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=97.83  E-value=0.00061  Score=53.79  Aligned_cols=27  Identities=30%  Similarity=0.321  Sum_probs=24.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|++|+||||+|+.+++.+.+
T Consensus        36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c   62 (535)
T PRK08451         36 AHAYLFSGLRGSGKTSSARIFARALVC   62 (535)
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            567899999999999999999999854

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=97.83  E-value=2.7e-05  Score=57.71  Aligned_cols=26  Identities=31%  Similarity=0.358  Sum_probs=23.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .+++.|+||+||||+|+.+++.+...
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l~~~   63 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALARELYGD   63 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhcCc
Confidence            57899999999999999999988643

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.82  E-value=3e-05  Score=56.94  Aligned_cols=27  Identities=30%  Similarity=0.279  Sum_probs=23.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ...|+++|++||||||+++.|...+..
T Consensus       132 ~~~ilI~G~tGSGKTTll~al~~~i~~  158 (299)
T TIGR02782       132 RKNILVVGGTGSGKTTLANALLAEIAK  158 (299)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence            357899999999999999999988754

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.82  E-value=2.9e-05  Score=43.54  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.+++|++||||||+..++.-.+
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999987554

>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional

Probab=97.82  E-value=1.6e-05  Score=55.68  Aligned_cols=23  Identities=22%  Similarity=0.379  Sum_probs=20.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++|.++|.|||||||+|+.+.+.
T Consensus         1 miI~i~G~~gsGKstva~~~~~~   23 (227)
T PHA02575          1 MLIAISGKKRSGKDTVADFIIEN   23 (227)
T ss_pred             CEEEEeCCCCCCHHHHHHHHHhc
Confidence            47999999999999999999765

>PRK04195 replication factor C large subunit; Provisional

Probab=97.81  E-value=1.7e-05  Score=61.84  Aligned_cols=27  Identities=41%  Similarity=0.621  Sum_probs=24.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|.|+||+||||+|+.|++.+++
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~   65 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGW   65 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            678999999999999999999998864

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.81  E-value=8.6e-05  Score=53.35  Aligned_cols=29  Identities=31%  Similarity=0.433  Sum_probs=25.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|+.|++.|+||.|||.+|+.|+......
T Consensus       150 APknVLFyGppGTGKTm~Akalane~kvp  178 (368)
T COG1223         150 APKNVLFYGPPGTGKTMMAKALANEAKVP  178 (368)
T ss_pred             CcceeEEECCCCccHHHHHHHHhcccCCc
Confidence            47899999999999999999999776543

>cd01895 EngA2 EngA2 subfamily

Probab=97.81  E-value=0.00014  Score=48.18  Aligned_cols=24  Identities=33%  Similarity=0.596  Sum_probs=20.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +..|+++|.+|+||||+...|...
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~   25 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGE   25 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCc
Confidence            456899999999999999999643

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.80  E-value=2.6e-05  Score=56.82  Aligned_cols=37  Identities=30%  Similarity=0.275  Sum_probs=28.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      .+-.+|.|+|.||||||||...+.+.+... ....++.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~  138 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIE  138 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEEC
Confidence            345789999999999999999999887533 3445553

>PRK13342 recombination factor protein RarA; Reviewed

Probab=97.79  E-value=1.7e-05  Score=60.75  Aligned_cols=28  Identities=29%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ...++|.|+||+||||+|+.+++.++..
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~   63 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAP   63 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3467889999999999999999887543

>TIGR00665 DnaB replicative DNA helicase

Probab=97.79  E-value=0.00061  Score=52.52  Aligned_cols=39  Identities=21%  Similarity=0.303  Sum_probs=31.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc-CCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~~~~d~   44 (143)
                      ..++++.|.||+|||+++..++...-. .+..+.+|+.+.
T Consensus       195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm  234 (434)
T TIGR00665       195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM  234 (434)
T ss_pred             CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC
Confidence            358999999999999999999976533 466777777653

This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.79  E-value=3.7e-05  Score=55.26  Aligned_cols=41  Identities=22%  Similarity=0.183  Sum_probs=33.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +..+++++|.||||||+++.+++...-..|.++..++.+.-
T Consensus        22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~   62 (260)
T COG0467          22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES   62 (260)
T ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence            34689999999999999999999776555888888876543

>cd04124 RabL2 RabL2 subfamily

Probab=97.79  E-value=0.0001  Score=48.87  Aligned_cols=20  Identities=30%  Similarity=0.443  Sum_probs=18.0

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|||||||...+..
T Consensus         3 i~vvG~~~vGKTsli~~~~~   22 (161)
T cd04124           3 IILLGDSAVGKSKLVERFLM   22 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78899999999999998864

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily

Probab=97.79  E-value=0.001  Score=51.10  Aligned_cols=38  Identities=21%  Similarity=0.297  Sum_probs=31.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d   43 (143)
                      ..++++.|.||+|||+++..++..+. ..+.++.+|+.+
T Consensus       194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE  232 (421)
T TIGR03600       194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE  232 (421)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            35899999999999999999997664 457777888765

Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=97.79  E-value=0.00047  Score=50.70  Aligned_cols=29  Identities=31%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|..+++.|+||+||||.|..|++.+...
T Consensus        23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~   51 (325)
T COG0470          23 LPHALLFYGPPGVGKTTAALALAKELLCE   51 (325)
T ss_pred             CCceeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence            45579999999999999999999998643

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=97.78  E-value=3.6e-05  Score=57.03  Aligned_cols=26  Identities=27%  Similarity=0.354  Sum_probs=23.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..|+++|.+||||||+.+.|...+.
T Consensus       144 ~~nilI~G~tGSGKTTll~aL~~~i~  169 (323)
T PRK13833        144 RLNIVISGGTGSGKTTLANAVIAEIV  169 (323)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999999998764

>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell

Probab=97.78  E-value=2.7e-05  Score=54.55  Aligned_cols=39  Identities=23%  Similarity=0.209  Sum_probs=34.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      +++++|.+|+||||++..++..+...+.++.+++.|.-.
T Consensus         1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~   39 (217)
T cd02035           1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH   39 (217)
T ss_pred             CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence            478999999999999999999998888988888877433

This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.78  E-value=0.00062  Score=45.60  Aligned_cols=115  Identities=17%  Similarity=0.195  Sum_probs=59.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      |..++|.|++|+||+|+|..+++.+-........-..-.... .+......|++-........   .+..+.+.++.+++
T Consensus        19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~-~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~~   94 (162)
T PF13177_consen   19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCR-RIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEFL   94 (162)
T ss_dssp             -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHH-HHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHHC
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHH-HHHhccCcceEEEecccccc---hhhHHHHHHHHHHH
Confidence            668999999999999999999999865443322100001111 11112233332211111000   00011233444444


Q ss_pred             -----hcCCeEEEEeCC-chhHHHHHHHHHHHHhhcCCEEEEEEee
Q psy2713          86 -----KNDGEVAIIDGT-TATMEKRKQIHDYFARKMGFKVLFVELI  125 (143)
Q Consensus        86 -----~~~~~~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~~v~~~  125 (143)
                           .....++|+|.. ..+.+....+.. .+++..-.+.+|-++
T Consensus        95 ~~~~~~~~~KviiI~~ad~l~~~a~NaLLK-~LEepp~~~~fiL~t  139 (162)
T PF13177_consen   95 SLSPSEGKYKVIIIDEADKLTEEAQNALLK-TLEEPPENTYFILIT  139 (162)
T ss_dssp             TSS-TTSSSEEEEEETGGGS-HHHHHHHHH-HHHSTTTTEEEEEEE
T ss_pred             HHHHhcCCceEEEeehHhhhhHHHHHHHHH-HhcCCCCCEEEEEEE
Confidence                 223567777665 567788888998 998876666555443

...

>KOG0734|consensus

Probab=97.77  E-value=7.2e-05  Score=58.45  Aligned_cols=26  Identities=42%  Similarity=0.534  Sum_probs=22.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      |+-|+++||||.|||-||++++-..+
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGEA~  362 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGEAG  362 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhcccC
Confidence            67899999999999999999985543

>PHA02244 ATPase-like protein

Probab=97.77  E-value=2e-05  Score=59.15  Aligned_cols=29  Identities=24%  Similarity=0.246  Sum_probs=24.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .-|+|.|+||+|||++|+.|+..++...+
T Consensus       120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv  148 (383)
T PHA02244        120 IPVFLKGGAGSGKNHIAEQIAEALDLDFY  148 (383)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            35788999999999999999999876544

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=97.77  E-value=4.6e-05  Score=53.65  Aligned_cols=38  Identities=18%  Similarity=0.228  Sum_probs=28.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|+|||||||++..++...-..+..+..++.+
T Consensus        20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e   57 (229)
T TIGR03881        20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE   57 (229)
T ss_pred             CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            46899999999999999999875443345566666553

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=97.77  E-value=3.5e-05  Score=58.18  Aligned_cols=26  Identities=19%  Similarity=0.133  Sum_probs=23.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+++++|++||||||+.+.|.+.+..
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~  175 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGE  175 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999988753

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>TIGR00436 era GTP-binding protein Era

Probab=97.77  E-value=9.1e-05  Score=53.57  Aligned_cols=21  Identities=38%  Similarity=0.632  Sum_probs=19.2

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .|.++|.||+|||||.+.|..
T Consensus         2 ~V~liG~pnvGKSTLln~L~~   22 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHG   22 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            588999999999999999974

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=97.76  E-value=0.00018  Score=49.97  Aligned_cols=29  Identities=21%  Similarity=0.147  Sum_probs=23.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .-|++.|++||||||+...+.+..-....
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~   34 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY   34 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccC
Confidence            67999999999999999999876544333

>cd00154 Rab Rab family

Probab=97.76  E-value=0.00025  Score=46.06  Aligned_cols=22  Identities=27%  Similarity=0.330  Sum_probs=19.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      -|+++|.|||||||+...+...
T Consensus         2 ~i~~~G~~~~GKStl~~~l~~~   23 (159)
T cd00154           2 KIVLIGDSGVGKTSLLLRFVDG   23 (159)
T ss_pred             eEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998643

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=97.76  E-value=4.2e-05  Score=55.36  Aligned_cols=26  Identities=42%  Similarity=0.510  Sum_probs=23.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ....+|.+.|++|+||||+|..+++.
T Consensus        17 ~~~~~v~I~G~~G~GKT~LA~~~~~~   42 (287)
T PF00931_consen   17 NEVRVVAIVGMGGIGKTTLARQVARD   42 (287)
T ss_dssp             TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred             CCeEEEEEEcCCcCCcceeeeecccc
Confidence            45689999999999999999999977

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=97.76  E-value=0.00048  Score=50.86  Aligned_cols=28  Identities=21%  Similarity=0.233  Sum_probs=25.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      -+..++|+|++|+||||+|+.+++.+.+
T Consensus        25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c   52 (313)
T PRK05564         25 FSHAHIIVGEDGIGKSLLAKEIALKILG   52 (313)
T ss_pred             CCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence            3678999999999999999999998854

>PRK05636 replicative DNA helicase; Provisional

Probab=97.75  E-value=0.00069  Score=53.29  Aligned_cols=38  Identities=24%  Similarity=0.356  Sum_probs=29.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d   43 (143)
                      ..+|++.|.||+||||++..++...- ..+..+.+|+.+
T Consensus       265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlE  303 (505)
T PRK05636        265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLE  303 (505)
T ss_pred             CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence            46899999999999999999987653 235666677664

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.75  E-value=0.00056  Score=51.63  Aligned_cols=28  Identities=25%  Similarity=0.296  Sum_probs=23.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      .-++++|+||+||||+++.|++.+...+
T Consensus       134 QR~LIvG~pGtGKTTLl~~la~~i~~~~  161 (380)
T PRK12608        134 QRGLIVAPPRAGKTVLLQQIAAAVAANH  161 (380)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            3468999999999999999999886543

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=97.75  E-value=0.0005  Score=53.32  Aligned_cols=41  Identities=27%  Similarity=0.391  Sum_probs=31.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~~~~   48 (143)
                      -++++|.+|+|||+|++.++..+.  ..+.++..++.+++...
T Consensus       143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~  185 (450)
T PRK14087        143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK  185 (450)
T ss_pred             ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence            488999999999999999998764  34566667776665433

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=97.75  E-value=5.1e-05  Score=49.85  Aligned_cols=38  Identities=32%  Similarity=0.302  Sum_probs=30.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEeh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSV   42 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~   42 (143)
                      +..+|++.|.=||||||+++.+++.++ ...+.+-.|+.
T Consensus        24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl   62 (149)
T COG0802          24 AGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL   62 (149)
T ss_pred             CCCEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee
Confidence            457999999999999999999999997 34455555543

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.74  E-value=2.4e-05  Score=51.26  Aligned_cols=22  Identities=36%  Similarity=0.504  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      -|+++|++|||||||++.|...
T Consensus         3 rimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            4889999999999999999753

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=3e-05  Score=56.98  Aligned_cols=29  Identities=31%  Similarity=0.406  Sum_probs=25.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +..|++.||.|||||-+|+.||+.|+.++
T Consensus        97 KSNILLiGPTGsGKTlLAqTLAk~LnVPF  125 (408)
T COG1219          97 KSNILLIGPTGSGKTLLAQTLAKILNVPF  125 (408)
T ss_pred             eccEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            45799999999999999999999987654

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=97.74  E-value=5.3e-05  Score=52.80  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=19.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.++.||||+||||++..+...+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            68999999999999888888777

>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]

Probab=97.74  E-value=4.4e-05  Score=57.48  Aligned_cols=40  Identities=25%  Similarity=0.258  Sum_probs=35.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .+..++++|+..|||||++..|+.++...|.++.++.+|-
T Consensus        72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv  111 (398)
T COG1341          72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV  111 (398)
T ss_pred             CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence            4578999999999999999999999998898888887774

>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.74  E-value=2.9e-05  Score=57.53  Aligned_cols=34  Identities=26%  Similarity=0.336  Sum_probs=30.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      .|+.|+|+||.|+|||-+|+.|++..+.+++++.
T Consensus        49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE   82 (444)
T COG1220          49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE   82 (444)
T ss_pred             CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence            5889999999999999999999999988876553

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=97.73  E-value=2.7e-05  Score=55.01  Aligned_cols=23  Identities=30%  Similarity=0.443  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .++.++|.+||||||+++.|+-.
T Consensus        34 e~lgivGeSGsGKSTL~r~l~Gl   56 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAGL   56 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhcc
Confidence            57899999999999999999844

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.73  E-value=5.3e-05  Score=52.32  Aligned_cols=36  Identities=25%  Similarity=0.248  Sum_probs=28.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      ..+.++.|+||+||||+.+.+.+.+...+.++..+.
T Consensus        18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a   53 (196)
T PF13604_consen   18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA   53 (196)
T ss_dssp             CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence            458899999999999999999988877676555553

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=97.73  E-value=4.8e-05  Score=56.36  Aligned_cols=25  Identities=20%  Similarity=0.301  Sum_probs=22.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ...|+++|++||||||+.+.|...+
T Consensus       148 ~~~ilI~G~tGSGKTTll~aL~~~~  172 (319)
T PRK13894        148 HRNILVIGGTGSGKTTLVNAIINEM  172 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            4679999999999999999999765

>PRK08006 replicative DNA helicase; Provisional

Probab=97.73  E-value=0.00091  Score=52.20  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=30.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d   43 (143)
                      ..+|++.|.||.|||++|..++...- ..+..+.+|+.+
T Consensus       224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE  262 (471)
T PRK08006        224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE  262 (471)
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            46899999999999999999997653 346777788775

>PRK13764 ATPase; Provisional

Probab=97.73  E-value=4.3e-05  Score=60.86  Aligned_cols=29  Identities=21%  Similarity=0.391  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +..|+++|+|||||||+++.|+..+...+
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~  285 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYADMG  285 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence            46799999999999999999999886544

>PRK10646 ADP-binding protein; Provisional

Probab=97.73  E-value=5e-05  Score=50.35  Aligned_cols=27  Identities=26%  Similarity=0.281  Sum_probs=24.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..+|++.|.-||||||+++.|++.++.
T Consensus        28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~   54 (153)
T PRK10646         28 ATVIYLYGDLGAGKTTFSRGFLQALGH   54 (153)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            358999999999999999999999975

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=97.72  E-value=0.00041  Score=49.71  Aligned_cols=28  Identities=25%  Similarity=0.264  Sum_probs=24.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ...+++.|++|+||||+++.+...+...
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~   43 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITKN   43 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccccc
Confidence            3578999999999999999999887654

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional

Probab=97.71  E-value=4.6e-05  Score=58.34  Aligned_cols=37  Identities=22%  Similarity=0.240  Sum_probs=33.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      .+|-|+|.+|||||||+..|...|...|+++.++..+
T Consensus         2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~   38 (452)
T PRK14495          2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS   38 (452)
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence            3899999999999999999999999999999888544

>PRK09519 recA DNA recombination protein RecA; Reviewed

Probab=97.71  E-value=0.00033  Score=57.41  Aligned_cols=38  Identities=16%  Similarity=0.138  Sum_probs=28.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.+.|+|||||||++..++......+-.+..+..+
T Consensus        60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E   97 (790)
T PRK09519         60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE   97 (790)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence            46889999999999999988776544455556666544

>KOG0731|consensus

Probab=97.71  E-value=7.9e-05  Score=60.39  Aligned_cols=30  Identities=37%  Similarity=0.390  Sum_probs=24.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      -|+=++++||||+|||-||+++|-.-+.++
T Consensus       343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF  372 (774)
T KOG0731|consen  343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPF  372 (774)
T ss_pred             CcCceEEECCCCCcHHHHHHHHhcccCCce
Confidence            367799999999999999999996655443

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.71  E-value=2.9e-05  Score=50.12  Aligned_cols=25  Identities=36%  Similarity=0.492  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+..+
T Consensus        11 g~~~~i~G~nGsGKStLl~~l~g~~   35 (137)
T PF00005_consen   11 GEIVAIVGPNGSGKSTLLKALAGLL   35 (137)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEccCCCccccceeeecccc
Confidence            4589999999999999999998554

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.71  E-value=3.6e-05  Score=48.38  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |++.|.+|||||||.+.|...
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            789999999999999999854

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=97.71  E-value=0.00088  Score=50.04  Aligned_cols=116  Identities=16%  Similarity=0.146  Sum_probs=61.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh-hhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK-HLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      .+..++|+|++|+||+|+|..+++.+.+....... .++.=..+ .+.....+|++-...+....   .+....+.++.+
T Consensus        23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~-~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~---~I~idqiR~l~~   98 (334)
T PRK07993         23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK-SCGHCRGCQLMQAGTHPDYYTLTPEKGKS---SLGVDAVREVTE   98 (334)
T ss_pred             cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCCCCEEEEecccccc---cCCHHHHHHHHH
Confidence            36789999999999999999999999764321110 11110111 12223345553321111000   011112333333


Q ss_pred             HH-----hcCCeEEEEeCC-chhHHHHHHHHHHHHhhcCCEEEEEEee
Q psy2713          84 WL-----KNDGEVAIIDGT-TATMEKRKQIHDYFARKMGFKVLFVELI  125 (143)
Q Consensus        84 ~l-----~~~~~~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~~v~~~  125 (143)
                      .+     ...-.++|+|.. ..+.+....+.+ .+++-.-..++|-+.
T Consensus        99 ~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLK-tLEEPp~~t~fiL~t  145 (334)
T PRK07993         99 KLYEHARLGGAKVVWLPDAALLTDAAANALLK-TLEEPPENTWFFLAC  145 (334)
T ss_pred             HHhhccccCCceEEEEcchHhhCHHHHHHHHH-HhcCCCCCeEEEEEE
Confidence            32     233456777654 466667778888 888866555555443

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.71  E-value=5e-05  Score=54.81  Aligned_cols=28  Identities=21%  Similarity=0.171  Sum_probs=24.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ...|+++|++||||||+.+.+...+...
T Consensus       127 ~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  127 RGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             ceEEEEECCCccccchHHHHHhhhcccc
Confidence            5789999999999999999999887654

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=97.71  E-value=3.6e-05  Score=57.23  Aligned_cols=27  Identities=33%  Similarity=0.441  Sum_probs=23.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..|+++|.|||||||+++.|++.++..
T Consensus       163 ~~~~~~G~~~~gkstl~~~l~~~~~~~  189 (325)
T TIGR01526       163 KTVAILGGESTGKSTLVNKLAAVFNTT  189 (325)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence            478999999999999999999987643

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR00763 lon ATP-dependent protease La

Probab=97.70  E-value=3.3e-05  Score=63.50  Aligned_cols=30  Identities=30%  Similarity=0.409  Sum_probs=25.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      ...++|+|+||+||||+|+.|++.++..++
T Consensus       347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~  376 (775)
T TIGR00763       347 GPILCLVGPPGVGKTSLGKSIAKALNRKFV  376 (775)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence            347999999999999999999999865544

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.70  E-value=3.2e-05  Score=52.24  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +++++|.||||||++|.+++...
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~~   23 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAEL   23 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhc
Confidence            47899999999999999998763

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA)

Probab=97.70  E-value=4.8e-05  Score=54.60  Aligned_cols=38  Identities=18%  Similarity=0.130  Sum_probs=34.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +++++|.+|+||||++..++..+...+.++-+++.|..
T Consensus         2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~   39 (254)
T cd00550           2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA   39 (254)
T ss_pred             EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence            78999999999999999999999888999999988753

This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.

>COG3911 Predicted ATPase [General function prediction only]

Probab=97.70  E-value=3.8e-05  Score=50.50  Aligned_cols=23  Identities=39%  Similarity=0.442  Sum_probs=21.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++.+++|-||+||||+...|+++
T Consensus        10 ~~fIltGgpGaGKTtLL~aLa~~   32 (183)
T COG3911          10 KRFILTGGPGAGKTTLLAALARA   32 (183)
T ss_pred             eEEEEeCCCCCcHHHHHHHHHHc
Confidence            58999999999999999999876

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.70  E-value=4e-05  Score=53.43  Aligned_cols=26  Identities=35%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +..+-.+.||+||||||+.+.+.+-.
T Consensus        32 ~~~VTAlIGPSGcGKST~LR~lNRmn   57 (253)
T COG1117          32 KNKVTALIGPSGCGKSTLLRCLNRMN   57 (253)
T ss_pred             CCceEEEECCCCcCHHHHHHHHHhhc
Confidence            44688999999999999999998643

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.70  E-value=0.0014  Score=43.60  Aligned_cols=40  Identities=15%  Similarity=0.169  Sum_probs=28.2

Q ss_pred             HHHhcCCeEEEEeCCchh------HHHHHHHHHHHHhhcCCEEEEEE
Q psy2713          83 KWLKNDGEVAIIDGTTAT------MEKRKQIHDYFARKMGFKVLFVE  123 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~------~~~r~~~~~~~~~~~~~~~~~v~  123 (143)
                      ..+-.....+++|-+++.      ...|++... .++..+++.+.|.
T Consensus       147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs-~~r~agiPtv~VT  192 (213)
T COG4136         147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFS-EVRAAGIPTVQVT  192 (213)
T ss_pred             HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH-HHHhcCCCeEEEe
Confidence            344445778999998743      356677777 8888899887654

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.70  E-value=3.1e-05  Score=57.52  Aligned_cols=21  Identities=29%  Similarity=0.426  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .++++.||+||||||+-+.||
T Consensus        30 ef~vllGPSGcGKSTlLr~IA   50 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIA   50 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHh
Confidence            579999999999999999998

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.69  E-value=7e-05  Score=56.07  Aligned_cols=27  Identities=15%  Similarity=0.265  Sum_probs=24.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..+|+++|++||||||+.+.+...+..
T Consensus       122 ~g~ili~G~tGSGKTT~l~al~~~i~~  148 (343)
T TIGR01420       122 RGLILVTGPTGSGKSTTLASMIDYINK  148 (343)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence            468999999999999999999987754

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=97.69  E-value=0.001  Score=53.57  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++|+|++|+||||+|+.+++.+.+.
T Consensus        39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~   66 (614)
T PRK14971         39 AHAYLFCGPRGVGKTTCARIFAKTINCQ   66 (614)
T ss_pred             CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            5679999999999999999999998754

>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length

Probab=97.69  E-value=5e-05  Score=56.57  Aligned_cols=29  Identities=31%  Similarity=0.278  Sum_probs=25.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..+.++++.||+|+||||+++.|.+.+..
T Consensus        86 ~~krIl~L~GPvg~GKSsl~~~Lk~~le~  114 (358)
T PF08298_consen   86 ERKRILLLLGPVGGGKSSLAELLKRGLEE  114 (358)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence            45689999999999999999999988753

PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.

>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX

Probab=97.69  E-value=2.8e-05  Score=53.94  Aligned_cols=26  Identities=38%  Similarity=0.551  Sum_probs=20.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .-++|.|+||+|||++|+.+...|+.
T Consensus        23 h~lLl~GppGtGKTmlA~~l~~lLP~   48 (206)
T PF01078_consen   23 HHLLLIGPPGTGKTMLARRLPSLLPP   48 (206)
T ss_dssp             --EEEES-CCCTHHHHHHHHHHCS--
T ss_pred             CCeEEECCCCCCHHHHHHHHHHhCCC
Confidence            46899999999999999999987754

This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=97.69  E-value=0.00015  Score=56.52  Aligned_cols=112  Identities=20%  Similarity=0.243  Sum_probs=56.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc-----cCCCCceeEehhhhhhhhhhhcCCCCccccCchh--hhhHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT-----WTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE--GYNIRQLSAREAQE   79 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~   79 (143)
                      ..|+++|.||+|||||...|...-.     ..+...+.+....    .... ....+++..+.+  ...+.    .....
T Consensus        39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~----~~~~-~~~~l~DT~G~~~~~~~~~----~~~~~  109 (472)
T PRK03003         39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDA----EWNG-RRFTVVDTGGWEPDAKGLQ----ASVAE  109 (472)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEE----EECC-cEEEEEeCCCcCCcchhHH----HHHHH
Confidence            4699999999999999999974311     1122111111100    0000 001112211111  00011    11112


Q ss_pred             HHHHHH-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCc
Q psy2713          80 DATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQD  128 (143)
Q Consensus        80 ~~~~~l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~  128 (143)
                      ++..++ ...+..+|+|.+.........+.+ .++..+.++++|---++.
T Consensus       110 ~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~-~l~~~~~piilV~NK~Dl  158 (472)
T PRK03003        110 QAEVAMRTADAVLFVVDATVGATATDEAVAR-VLRRSGKPVILAANKVDD  158 (472)
T ss_pred             HHHHHHHhCCEEEEEEECCCCCCHHHHHHHH-HHHHcCCCEEEEEECccC
Confidence            222233 334667889998754444456777 777778888877655654

>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments

Probab=97.68  E-value=0.00019  Score=51.08  Aligned_cols=42  Identities=19%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .+++..|.-|+||||+|..|+-.|-..|.++.++..|.+.+.
T Consensus         2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S   43 (261)
T PF09140_consen    2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPS   43 (261)
T ss_dssp             EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-H
T ss_pred             EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence            367889999999999999999999999999999999876554

Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.68  E-value=3.7e-05  Score=48.30  Aligned_cols=20  Identities=40%  Similarity=0.687  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |++.|.|||||||+.+.|..
T Consensus         2 V~iiG~~~~GKSTlin~l~~   21 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTG   21 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            78999999999999999984

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01894 EngA1 EngA1 subfamily

Probab=97.68  E-value=9.2e-05  Score=48.36  Aligned_cols=20  Identities=40%  Similarity=0.632  Sum_probs=17.4

Q ss_pred             EEEccCCCChhHHHHHHHHH
Q psy2713          10 ALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus        10 ~l~G~pGsGKSTla~~l~~~   29 (143)
                      +++|.+|+||||+...|...
T Consensus         1 ~l~G~~~~GKssl~~~l~~~   20 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGR   20 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCC
Confidence            47899999999999999743

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=3e-05  Score=60.67  Aligned_cols=33  Identities=30%  Similarity=0.253  Sum_probs=27.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      .+..+++.|+||+|||.+|+.++...+..++..
T Consensus       275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v  307 (494)
T COG0464         275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISV  307 (494)
T ss_pred             CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence            456899999999999999999999776655433

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.68  E-value=4.7e-05  Score=57.28  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=23.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..+|+++|++||||||+.+.|...+.
T Consensus       134 ~glilI~GpTGSGKTTtL~aLl~~i~  159 (358)
T TIGR02524       134 EGIVFITGATGSGKSTLLAAIIRELA  159 (358)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            46999999999999999999998874

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.68  E-value=6.7e-05  Score=52.90  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=22.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|+|||||||++..++...
T Consensus        19 g~i~~i~G~~GsGKT~l~~~l~~~~   43 (235)
T cd01123          19 GSITEIFGEFGSGKTQLCHQLAVTV   43 (235)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHe
Confidence            4689999999999999999998553

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>cd00881 GTP_translation_factor GTP translation factor family

Probab=97.67  E-value=0.00031  Score=47.30  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             EEEEccCCCChhHHHHHHHHHHc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      |+++|.+||||||+...|.....
T Consensus         2 v~v~G~~~~GKStlln~l~~~~~   24 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYVTG   24 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHhcC
Confidence            78999999999999999987643

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.67  E-value=0.00066  Score=48.20  Aligned_cols=24  Identities=33%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .+-++.|+||+||||++..++...
T Consensus         2 ~~~ll~g~~G~GKS~lal~la~~v   25 (239)
T cd01125           2 YVSALVAPGGTGKSSLLLVLALAM   25 (239)
T ss_pred             ceeEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999998653

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK09302 circadian clock protein KaiC; Reviewed

Probab=97.67  E-value=0.0015  Score=51.48  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=30.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|.||+|||+++.+++...-..+.++.+++.+
T Consensus       273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e  310 (509)
T PRK09302        273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE  310 (509)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            46889999999999999999987655557777777554

>PHA02624 large T antigen; Provisional

Probab=97.67  E-value=4.8e-05  Score=60.33  Aligned_cols=28  Identities=25%  Similarity=0.087  Sum_probs=25.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +++.++++.|+|||||||++..|.+.++
T Consensus       429 PKk~~il~~GPpnTGKTtf~~sLl~~L~  456 (647)
T PHA02624        429 PKRRYWLFKGPVNSGKTTLAAALLDLCG  456 (647)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3456999999999999999999999984

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.67  E-value=3.6e-05  Score=59.17  Aligned_cols=26  Identities=38%  Similarity=0.514  Sum_probs=23.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ...|++.|+||+||||+|+.|+..+.
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~  219 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLT  219 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence            35788999999999999999998875

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.67  E-value=4.7e-05  Score=50.90  Aligned_cols=24  Identities=25%  Similarity=0.248  Sum_probs=21.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..+++|+|.+|+|||||.+.|...
T Consensus        35 ~k~~vl~G~SGvGKSSLiN~L~~~   58 (161)
T PF03193_consen   35 GKTSVLLGQSGVGKSSLINALLPE   58 (161)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            478999999999999999999744

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=97.67  E-value=0.00058  Score=51.88  Aligned_cols=31  Identities=26%  Similarity=0.321  Sum_probs=24.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      -.++.|+||+||||+++.++..+...+.+..
T Consensus       171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~  201 (416)
T PRK09376        171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVH  201 (416)
T ss_pred             eEEEeCCCCCChhHHHHHHHHHHHhhcCCeE
Confidence            4678899999999999999988765433443

>KOG0071|consensus

Probab=97.67  E-value=7e-05  Score=48.73  Aligned_cols=97  Identities=21%  Similarity=0.284  Sum_probs=53.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCcccc-CchhhhhHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRV-DNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      +.+-|++.|+.||||||+.-+|.-.-....+++.-|+...+-...      .. |+. +-..         ++-+.-++.
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN------~k-fNvwdvGG---------qd~iRplWr   79 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN------VK-FNVWDVGG---------QDKIRPLWR   79 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeee------eE-EeeeeccC---------chhhhHHHH
Confidence            456799999999999999999874433333444444443221111      11 221 1000         111333333


Q ss_pred             HH--hcCCeEEEEeCCch--hHHHHHHHHHHHHhhcCCE
Q psy2713          84 WL--KNDGEVAIIDGTTA--TMEKRKQIHDYFARKMGFK  118 (143)
Q Consensus        84 ~l--~~~~~~vi~d~~~~--~~~~r~~~~~~~~~~~~~~  118 (143)
                      ..  ...|-++|+|+...  ..+.|..+.. +.......
T Consensus        80 hYy~gtqglIFV~Dsa~~dr~eeAr~ELh~-ii~~~em~  117 (180)
T KOG0071|consen   80 HYYTGTQGLIFVVDSADRDRIEEARNELHR-IINDREMR  117 (180)
T ss_pred             hhccCCceEEEEEeccchhhHHHHHHHHHH-HhCCHhhh
Confidence            22  45678899998754  4466777777 66554433

>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional

Probab=97.66  E-value=6.5e-05  Score=60.07  Aligned_cols=38  Identities=18%  Similarity=0.195  Sum_probs=34.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      +..++-++|.+||||||+...|..+|...|+++.++..
T Consensus         9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh   46 (597)
T PRK14491          9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH   46 (597)
T ss_pred             CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence            35699999999999999999999999988998888855

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.66  E-value=0.00076  Score=48.54  Aligned_cols=26  Identities=23%  Similarity=0.244  Sum_probs=22.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..++.++|-+||||||+++.|...+.
T Consensus        39 ge~~glVGESG~GKSTlgr~i~~L~~   64 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLILGLEE   64 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHHcCcC
Confidence            35789999999999999999987664

>PTZ00202 tuzin; Provisional

Probab=97.66  E-value=0.00071  Score=52.29  Aligned_cols=26  Identities=27%  Similarity=0.411  Sum_probs=23.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      |.+++++|++|+||||+++.+...++
T Consensus       286 privvLtG~~G~GKTTLlR~~~~~l~  311 (550)
T PTZ00202        286 PRIVVFTGFRGCGKSSLCRSAVRKEG  311 (550)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcCC
Confidence            56999999999999999999998776

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=97.66  E-value=0.00096  Score=49.73  Aligned_cols=29  Identities=21%  Similarity=0.132  Sum_probs=25.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      -|..++|+|++|+||+|+|+.+++.+.+.
T Consensus        27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~   55 (329)
T PRK08058         27 LSHAYLFEGAKGTGKKATALWLAKSLFCL   55 (329)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence            36789999999999999999999998654

>TIGR00767 rho transcription termination factor Rho

Probab=97.66  E-value=0.00047  Score=52.50  Aligned_cols=29  Identities=31%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      ..++++|+||+||||+++.+++.+...+.
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhf  197 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITRNHP  197 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhcccCC
Confidence            46899999999999999999998765543

Members of this family differ in the specificity of RNA binding.

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=97.66  E-value=4.8e-05  Score=57.02  Aligned_cols=28  Identities=29%  Similarity=0.400  Sum_probs=23.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .-..|+++|+||+|||.+|..+++.|+.
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~   76 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGE   76 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence            3578999999999999999999999973

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=97.66  E-value=0.0012  Score=47.81  Aligned_cols=106  Identities=15%  Similarity=0.088  Sum_probs=69.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh---hhhcC---------CC-----------Cccc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH---LELYN---------SH-----------DIFR   60 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~---~~~~~---------~~-----------~~~~   60 (143)
                      .+..+.+..|.+|.||||++-.||..+-..|.++.++.+|-+....   +....         +.           ..++
T Consensus        56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ls  135 (265)
T COG0489          56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLS  135 (265)
T ss_pred             cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEE
Confidence            3456889999999999999999999999999999999888765542   11100         00           0000


Q ss_pred             --cCchhhhhHHHHHHHHHHHHHHHHHhcC-CeEEEEeCCchhHHHHHHHHH
Q psy2713          61 --VDNTEGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHD  109 (143)
Q Consensus        61 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~vi~d~~~~~~~~r~~~~~  109 (143)
                        ........+++......+.+++...... -+.+|+|++..+...--.+.+
T Consensus       136 i~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~  187 (265)
T COG0489         136 ILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQ  187 (265)
T ss_pred             EEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHh
Confidence              0011223345555556667777666444 578999999988765555544

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=97.66  E-value=4.8e-05  Score=52.07  Aligned_cols=25  Identities=36%  Similarity=0.456  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+-.+
T Consensus        18 Ge~~~i~G~nGsGKSTLl~~i~G~~   42 (190)
T TIGR01166        18 GEVLALLGANGAGKSTLLLHLNGLL   42 (190)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999998544

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	143
2axn_A	520	Crystal Structure Of The Human Inducible Form 6- Ph		1e-25
2bif_A	469	6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase		9e-24
3bif_A	468	6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase		9e-24
1bif_A	469	6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase		9e-24
1k6m_A	432	Crystal Structure Of Human Liver 6-Phosphofructo-2-		4e-23

>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6- Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Length = 520

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P V+ +VGLPARGKT ++ KL+RYL W    +KVF+V  YRR+ ++ Y+S++ FR DN 
Sbjct: 34  SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNE 93
Query: 65  EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           E   +R+  A  A  D   +L K  G++A+ D T  T E+R  I  +FA++  FK  F+E
Sbjct: 94  EAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMIL-HFAKENDFKAFFIE 152
Query: 124 LIVQDEEILEHNI 136
            +  D  ++  NI
Sbjct: 153 SVCDDPTVVASNI 165

>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a Mutant With F6p In Phosphatase Active Site Length = 469

Iteration: 1
 Score =  105 bits (262), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
            P ++ +VGLPARGKT ++ KL+RYL +    ++ F+V  YRR  ++ Y S + F  DN 
Sbjct: 38  CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNE 97
Query: 65  EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           EG  IR+  A  A  D  K+L  + G VA+ D T  T E+R  I + F  + G+K  FVE
Sbjct: 98  EGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVE 156
Query: 124 LIVQDEEILEHNIKQ 138
            I  D E++  NI Q
Sbjct: 157 SICVDPEVIAANIVQ 171

>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty 6-Pf-2k Active Site Length = 468

Iteration: 1
 Score =  105 bits (262), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
            P ++ +VGLPARGKT ++ KL+RYL +    ++ F+V  YRR  ++ Y S + F  DN 
Sbjct: 37  CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNE 96
Query: 65  EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           EG  IR+  A  A  D  K+L  + G VA+ D T  T E+R  I + F  + G+K  FVE
Sbjct: 97  EGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVE 155
Query: 124 LIVQDEEILEHNIKQ 138
            I  D E++  NI Q
Sbjct: 156 SICVDPEVIAANIVQ 170

>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Bifunctional Enzyme Complexed With Atp-G-S And Phosphate Length = 469

Iteration: 1
 Score =  105 bits (262), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
            P ++ +VGLPARGKT ++ KL+RYL +    ++ F+V  YRR  ++ Y S + F  DN 
Sbjct: 38  CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNE 97
Query: 65  EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           EG  IR+  A  A  D  K+L  + G VA+ D T  T E+R  I + F  + G+K  FVE
Sbjct: 98  EGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVE 156
Query: 124 LIVQDEEILEHNIKQ 138
            I  D E++  NI Q
Sbjct: 157 SICVDPEVIAANIVQ 171

>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver 6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase Length = 432

Iteration: 1
 Score =  103 bits (256), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           +P +V +VGLPARGKT ++ KL+RYL +    +KVF++  YRR+ +  Y +++ F  DN 
Sbjct: 2   SPTMVIMVGLPARGKTYISTKLTRYLNFIGTPTKVFNLGQYRREAVS-YKNYEFFLPDNM 60
Query: 65  EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
           E   IR+  A  A +D   +L ++ G VA+ D T  T E+R  I   FA++ G+KV F+E
Sbjct: 61  EALQIRKQCALAALKDVHNYLSHEEGHVAVFDATNTTRERRSLILQ-FAKEHGYKVFFIE 119
Query: 124 LIVQDEEILEHNIKQ 138
            I  D  I+  NI+Q
Sbjct: 120 SICNDPGIIAENIRQ 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	143
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	2e-47
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	1e-45
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	4e-09
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	1e-08
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	2e-08
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-07
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	6e-04

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A Length = 469

 Score =  158 bits (400), Expect = 2e-47
 Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 4/144 (2%)

Query: 2   RQFT--PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIF 59
              T  P ++ +VGLPARGKT ++ KL+RYL +    ++ F+V  YRR  ++ Y S + F
Sbjct: 33  VCMTNCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFF 92

Query: 60  RVDNTEGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFK 118
             DN EG  IR+  A  A  D  K+L  + G VA+ D T  T E+R  I ++   + G+K
Sbjct: 93  LPDNEEGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFG-EQNGYK 151

Query: 119 VLFVELIVQDEEILEHNIKQSMCS 142
             FVE I  D E++  NI Q    
Sbjct: 152 TFFVESICVDPEVIAANIVQVKLG 175

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* Length = 520

 Score =  154 bits (389), Expect = 1e-45
 Identities = 52/143 (36%), Positives = 82/143 (57%), Gaps = 2/143 (1%)

Query: 1   LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
               +P V+ +VGLPARGKT ++ KL+RYL W    +KVF+V  YRR+ ++ Y+S++ FR
Sbjct: 30  KLTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFR 89

Query: 61  VDNTEGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
            DN E   +R+  A  A  D   +L  + G++A+ D T  T E+R  I  +  ++  FK 
Sbjct: 90  PDNEEAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMILHFA-KENDFKA 148

Query: 120 LFVELIVQDEEILEHNIKQSMCS 142
            F+E +  D  ++  NI +   S
Sbjct: 149 FFIESVCDDPTVVASNIMEVKIS 171

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 51.9 bits (124), Expect = 4e-09
 Identities = 20/133 (15%), Positives = 47/133 (35%), Gaps = 12/133 (9%)

Query: 5   TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
           TP ++ + G PA GKT L+  L+  L        + S  A++    +          D  
Sbjct: 4   TPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGLGWS-----DRE 53

Query: 65  EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
               +   +       A   L++ G+  I++         +++ +       F  + +  
Sbjct: 54  WSRRVGATAIMMLYHTAATILQS-GQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRC 111

Query: 125 IVQDEEILEHNIK 137
           +   + ++E  + 
Sbjct: 112 VASGDVLVERILS 124

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 50.6 bits (121), Expect = 1e-08
 Identities = 22/136 (16%), Positives = 49/136 (36%), Gaps = 16/136 (11%)

Query: 8   VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGY 67
           ++ L GLP  GK+  +  L++ L+  +    V   S   R+   ++              
Sbjct: 6   LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLG-SDLIRESFPVWKEK----------- 53

Query: 68  NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127
              +   +++          +  V I+D T      R+ + +  A+K       + L   
Sbjct: 54  --YEEFIKKSTYRLIDSALKNYWV-IVDDTNYYNSMRRDLINI-AKKYNKNYAIIYLKAS 109

Query: 128 DEEILEHNIKQSMCSP 143
            + ++  NI++    P
Sbjct: 110 LDVLIRRNIERGEKIP 125

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 49.4 bits (118), Expect = 2e-08
 Identities = 23/132 (17%), Positives = 48/132 (36%), Gaps = 8/132 (6%)

Query: 6   PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
             ++  +G P  GK+  A +        +      +   YR+  +  +   D ++    +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIA----KNPGFYNINRDDYRQS-IMAHEERDEYKYTKKK 56

Query: 66  GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELI 125
              +  +   +  +       +   V II  T    E+R      FA++ G+KV      
Sbjct: 57  EGIVTGM-QFDTAKSILYGGDSVKGV-IISDTNLNPERRLAWET-FAKEYGWKVEHKVFD 113

Query: 126 VQDEEILEHNIK 137
           V   E+++ N K
Sbjct: 114 VPWTELVKRNSK 125

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 24/138 (17%), Positives = 44/138 (31%), Gaps = 20/138 (14%)

Query: 6   PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
             ++  +G P  GK+  A +        +      +   YR+          I   +  +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIA----KNPGFYNINRDDYRQS---------IMAHEERD 48

Query: 66  GYNIRQLSAREAQEDATKWLK------NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
            Y   +              K      +  +  II  T    E+R      FA++ G+KV
Sbjct: 49  EYKYTKKKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWET-FAKEYGWKV 107

Query: 120 LFVELIVQDEEILEHNIK 137
                 V   E+++ N K
Sbjct: 108 EHKVFDVPWTELVKRNSK 125

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 20/132 (15%), Positives = 45/132 (34%), Gaps = 7/132 (5%)

Query: 6   PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
           P+ + L G    GKT +                +    ++R +H       ++ +    +
Sbjct: 32  PIAILLGGQSGAGKTTIHRIK---QKEFQGNIVIIDGDSFRSQHPHY---LELQQEYGKD 85

Query: 66  GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELI 125
                +  A +  E     L + G   +I+GT  T++  K+      +  G++V    + 
Sbjct: 86  SVEYTKDFAGKMVESLVTKLSSLGYNLLIEGTLRTVDVPKKTAQLL-KNKGYEVQLALIA 144

Query: 126 VQDEEILEHNIK 137
            + E      + 
Sbjct: 145 TKPELSYLSTLI 156

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 5e-05
 Identities = 23/150 (15%), Positives = 42/150 (28%), Gaps = 36/150 (24%)

Query: 1   LRQFTP-LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIF 59
           L +  P   V + G+   GKT +A                  +       ++      IF
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVA------------------LDVCLSYKVQCKMDFKIF 185

Query: 60  ----RVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKM 115
               +  N+    +  L     Q D     ++D    I          + ++      K 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRRLLKSKP 242

Query: 116 GFKVLFVELI---VQDEEILEH-NIKQSMC 141
               L   L+   VQ+ +     N+    C
Sbjct: 243 YENCL---LVLLNVQNAKAWNAFNLS---C 266

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178

 Score = 37.1 bits (85), Expect = 6e-04
 Identities = 18/136 (13%), Positives = 36/136 (26%), Gaps = 2/136 (1%)

Query: 8   VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGY 67
           ++ L G  + GK+ +   L   L        V S+       ++       F  D     
Sbjct: 5   MIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64

Query: 68  NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127
                +   A  +    +   G   IID         ++   + +      VL+V +   
Sbjct: 65  GPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQE--RWRSFVGDLDVLWVGVRCD 122

Query: 128 DEEILEHNIKQSMCSP 143
                     +     
Sbjct: 123 GAVAEGRETARGDRVA 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	143
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.91
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	99.87
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.78
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.74
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.73
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.71
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.7
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.7
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.7
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.7
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.68
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.67
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.65
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	99.63
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.63
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.63
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.62
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.57
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.57
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.57
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.56
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.55
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	99.55
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.54
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.54
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.53
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.53
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.52
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.52
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.52
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.51
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.51
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.48
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.47
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.47
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	99.45
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	99.42
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.42
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	99.4
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	99.39
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	99.38
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	99.37
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	99.36
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.35
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.35
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	99.34
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	99.34
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	99.33
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	99.32
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.28
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	99.28
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	99.27
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	99.27
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	99.26
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	99.26
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	99.26
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	99.26
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	99.23
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	99.23
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	99.23
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	99.22
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	99.22
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	99.22
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.21
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	99.2
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	99.18
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	99.17
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	99.14
1via_A	175	Shikimate kinase; structural genomics, transferase	99.12
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	99.11
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	99.11
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	99.06
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	99.05
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	99.04
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	99.04
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	99.04
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	99.04
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	99.03
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	99.02
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	99.0
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.99
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	98.98
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	98.97
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.95
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.95
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.94
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.94
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.92
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.92
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.91
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	98.9
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.88
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.88
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.85
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.83
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	98.83
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.81
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.8
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.78
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	98.75
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	98.72
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	98.72
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	98.71
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	98.7
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.68
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.68
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.67
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.66
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.65
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	98.65
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	98.59
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.58
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.57
2xxa_A	433	Signal recognition particle protein; protein trans	98.57
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.57
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	98.54
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.52
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	98.52
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.49
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	98.49
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.49
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.48
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.48
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	98.47
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	98.46
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	98.46
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.45
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.44
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.43
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.42
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	98.42
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.4
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.4
3bos_A	242	Putative DNA replication factor; P-loop containing	98.38
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.38
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.37
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.37
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.37
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	98.36
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.35
2cvh_A	220	DNA repair and recombination protein RADB; filamen	98.32
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.32
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.3
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.3
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	98.3
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.29
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	98.28
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.27
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	98.27
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	98.26
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.26
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.26
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.26
1u94_A	356	RECA protein, recombinase A; homologous recombinat	98.25
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	98.25
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.25
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	98.24
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.23
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.23
1xp8_A	366	RECA protein, recombinase A; recombination, radior	98.22
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.21
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.21
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.21
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.19
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	98.17
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	98.17
2og2_A	359	Putative signal recognition particle receptor; nuc	98.17
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.15
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.15
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	98.15
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.15
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.14
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.13
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	98.13
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.13
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.13
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.12
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.12
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.11
2z43_A	324	DNA repair and recombination protein RADA; archaea	98.11
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.11
1tue_A	212	Replication protein E1; helicase, replication, E1E	98.11
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	98.11
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.1
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	98.1
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	98.1
2qgz_A	308	Helicase loader, putative primosome component; str	98.09
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.08
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.08
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	98.07
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	98.07
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.07
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	98.07
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.07
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	98.07
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	98.06
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.06
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.05
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	98.05
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	98.04
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.03
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.03
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	98.03
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	98.03
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	98.03
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.02
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.01
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.01
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.01
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.0
3rhf_A	289	Putative polyphosphate kinase 2 family protein; PS	98.0
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.0
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.0
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.0
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.99
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.99
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.99
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.98
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.97
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.96
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	97.95
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.94
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.93
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	97.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.92
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.91
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.91
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.91
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	97.91
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.9
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.9
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.9
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	97.89
4a74_A	231	DNA repair and recombination protein RADA; hydrola	97.89
3io5_A	333	Recombination and repair protein; storage dimer, i	97.88
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	97.88
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.88
2r6a_A	454	DNAB helicase, replicative helicase; replication,	97.87
2eyu_A	261	Twitching motility protein PILT; pilus retraction	97.87
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.86
3czp_A	500	Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2	97.86
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.85
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	97.85
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	97.84
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.84
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	97.83
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	97.83
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.82
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	97.82
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.82
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	97.81
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.8
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.8
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	97.79
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	97.78
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	97.78
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	97.77
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	97.77
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.77
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	97.76
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	97.76
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.76
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	97.75
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	97.75
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	97.74
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.74
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.74
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	97.74
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	97.72
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	97.71
2ewv_A	372	Twitching motility protein PILT; pilus retraction	97.7
3pvs_A	447	Replication-associated recombination protein A; ma	97.7
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	97.7
2hf9_A	226	Probable hydrogenase nickel incorporation protein	97.7
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.7
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.69
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.69
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.69
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.69
2r44_A	331	Uncharacterized protein; putative ATPase, structur	97.69
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	97.69
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	97.68
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	97.68
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	97.68
3end_A	307	Light-independent protochlorophyllide reductase ir	97.68
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.67
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.67
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	97.67
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.66
3co5_A	143	Putative two-component system transcriptional RES	97.66
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.66
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	97.66
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.65
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.64
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.64
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.64
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.63
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.63
2chq_A	319	Replication factor C small subunit; DNA-binding pr	97.63
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	97.63
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.63
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	97.62
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	97.62
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.62
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.62
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.61
1p9r_A	418	General secretion pathway protein E; bacterial typ	97.61
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.61
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.6
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.6
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	97.6
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.6
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.59
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.59
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.59
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	97.58
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.58
1g6h_A	257	High-affinity branched-chain amino acid transport	97.58
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	97.58
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.58
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.58
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	97.57
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.57
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	97.57
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.57
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	97.56
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	97.56
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	97.56
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	97.56
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	97.56
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.56
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.55
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	97.54
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.54
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	97.53
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.53
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.53
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	97.53
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	97.53
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.53
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	97.52
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.52
1of1_A	376	Thymidine kinase; transferase, antiviral drug, enz	97.52
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	97.52
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	97.51
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.5
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.5
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.5
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	97.5
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	97.5
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	97.49
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	97.49
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	97.49
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	97.49
3e2i_A	219	Thymidine kinase; Zn-binding, ATP-binding, DNA syn	97.49
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	97.49
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.48
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.48
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.48
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	97.48
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.48
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	97.47
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.47
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.47
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.46
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.46
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	97.45
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	97.44
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.44
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.44
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.44
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.44
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	97.43
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	97.43
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	97.43
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.43
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.43
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	97.43
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	97.42
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.42
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	97.41
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.41
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.4
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	97.4
1e2k_A	331	Thymidine kinase; transferase, antiviral drug, enz	97.4
2ged_A	193	SR-beta, signal recognition particle receptor beta	97.4
3ice_A	422	Transcription termination factor RHO; transcriptio	97.4
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	97.39
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	97.39
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.39
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.38
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	97.38
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	97.38
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	97.38
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.38
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	97.37
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	97.37
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	97.37
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.36
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.36
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.36
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	97.36
3fwy_A	314	Light-independent protochlorophyllide reductase I	97.36
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	97.35
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	97.35
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	97.35
1osn_A	341	Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, tra	97.35
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	97.34
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.34
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	97.34
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.33
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.33
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.33
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.33
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	97.33
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	97.32
3cwq_A	209	Para family chromosome partitioning protein; alpha	97.3
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	97.3
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.3
2fna_A	357	Conserved hypothetical protein; structural genomic	97.3
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.3
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	97.29
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	97.29
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	97.29
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	97.29
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.29
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	97.29
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	97.29
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.29
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	97.28
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	97.28
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.28
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	97.27
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	97.27
2xj4_A	286	MIPZ; replication, cell division, ATPase, WACA; 1.	97.27
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	97.26
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.26
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.26
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	97.26
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.26
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	97.25
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.25
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.25
3la6_A	286	Tyrosine-protein kinase WZC; P-loop protein, nucle	97.25
1w4r_A	195	Thymidine kinase; type II, human, cytosolic, phosp	97.25
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	97.25
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.23
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	97.23
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	97.23
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.23
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.22
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	97.22
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	97.22
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	97.21
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.21
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.21
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	97.21
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.21
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	97.2
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	97.2
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.2
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	97.2
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.2
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	97.2
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.2
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	97.2
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	97.19
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.19
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.18
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	97.18
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	97.17
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.17
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	97.17
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	97.16
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	97.15
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.14
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	97.14
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.14
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.13
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	97.13
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	97.13
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	97.13
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	97.13
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	97.12
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.12
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.11
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	97.11
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	97.11
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	97.11
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	97.1
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	97.1
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.09
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	97.09
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	97.09
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	97.09
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	97.09
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	97.08
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	97.08
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	97.08
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.08

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.91  E-value=2e-23  Score=161.07  Aligned_cols=135  Identities=40%  Similarity=0.723  Sum_probs=113.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      ++.+|+|+|+|||||||+|+.|++++++.++++.+|+.|++++.........++|+..+.+....++.++..++..+..+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~  113 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSY  113 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            56799999999999999999999999999999999999999888655333356777666666666666666667777777


Q ss_pred             H-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 L-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      + ...|..+|+|+++...+.|+.+.+ +++++++.+++|++.|+++++++||+++++
T Consensus       114 L~~~~g~~VIvDat~~~~~~R~~~~~-~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~  169 (520)
T 2axn_A          114 LAKEGGQIAVFDATNTTRERRHMILH-FAKENDFKAFFIESVCDDPTVVASNIMEVK  169 (520)
T ss_dssp             HHHSCCCEEEEESCCCSHHHHHHHHH-HHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred             HHhcCCceEEecCCCCCHHHHHHHHH-HHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence            7 356889999999999999999999 999999999999999999999999986544

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=99.87  E-value=6.8e-21  Score=145.53  Aligned_cols=136  Identities=40%  Similarity=0.682  Sum_probs=112.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      .++.+|+|+|+|||||||+++.|++.+++.+++++.++.|.++....+.....++|+..+.+....+..++...+..+..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999999887754432234667766665556666666666666666


Q ss_pred             HH-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ++ ..+|..+|+|+++...+.|+.|.+ .+++.++.++++++.|++++++.+|+++.+
T Consensus       117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~-~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~  173 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVESICVDPEVIAANIVQVK  173 (469)
T ss_dssp             HHHTTCCSEEEEESCCCSHHHHHHHHH-HHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             HHHhCCCCEEEEeCCCCCHHHHHHHHH-HHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence            66 456889999999999999999999 999889999999999999999999998754

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.78  E-value=1.3e-17  Score=111.65  Aligned_cols=122  Identities=21%  Similarity=0.233  Sum_probs=84.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH-HHccCCCCceeEehhhhhhhhhhhcCCC-CccccCchhhhhHHHHHHHHHHHH-H
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR-YLTWTDHKSKVFSVSAYRRKHLELYNSH-DIFRVDNTEGYNIRQLSAREAQED-A   81 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~-~l~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~   81 (143)
                      +|.+|+|+|+|||||||+|+.|++ .++     ...++.|.++........+. ..+.   .+.....    ...... +
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~~-----~~~i~~d~~r~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~   68 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPG-----FYNINRDDYRQSIMAHEERDEYKYT---KKKEGIV----TGMQFDTA   68 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTT-----EEEECHHHHHHHHTTSCCGGGCCCC---HHHHHHH----HHHHHHHH
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcCC-----cEEecHHHHHHHhhCCCccchhhhc---hhhhhHH----HHHHHHHH
Confidence            468999999999999999999998 333     35566777766543210010 1121   1111111    112222 2


Q ss_pred             HHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          82 TKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        82 ~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ...+.  ..+..+|+|+++.....++.|.+ +++.+++++.+|++.||.+++.+|+.+|.
T Consensus        69 ~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~R~~~R~  127 (181)
T 1ly1_A           69 KSILYGGDSVKGVIISDTNLNPERRLAWET-FAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (181)
T ss_dssp             HHHHTSCSSCCEEEECSCCCSHHHHHHHHH-HHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred             HHHHhhccCCCeEEEeCCCCCHHHHHHHHH-HHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence            33331  45789999999998888999998 88888999888999999999999998886

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.74  E-value=4.9e-17  Score=115.57  Aligned_cols=119  Identities=20%  Similarity=0.289  Sum_probs=84.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      ++.+|+|+|+|||||||+|+.|++.+...++....++.|.++.....       |......  ..+. ..   ...+...
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~--~~~~-~~---~~~i~~~   69 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEE--FIKK-ST---YRLIDSA   69 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHH--HHHH-HH---HHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHH--HHHH-HH---HHHHHHH
Confidence            35799999999999999999999987655554444577776543211       3221111  1111 11   1112223


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +. . ..+|+|+++...+.++.+.+ +++..+.+..+|++.||.+++.+|+.+|.
T Consensus        70 l~-~-~~vIiD~~~~~~~~~~~l~~-~a~~~~~~~~vi~l~~~~e~~~~R~~~R~  121 (260)
T 3a4m_A           70 LK-N-YWVIVDDTNYYNSMRRDLIN-IAKKYNKNYAIIYLKASLDVLIRRNIERG  121 (260)
T ss_dssp             HT-T-SEEEECSCCCSHHHHHHHHH-HHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred             hh-C-CEEEEeCCcccHHHHHHHHH-HHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence            33 3 78999999999999999999 99888999999999999999999998875

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.73  E-value=2e-16  Score=107.00  Aligned_cols=125  Identities=15%  Similarity=0.212  Sum_probs=78.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      +++.+|+|+|+|||||||+++.|++.++..     +++.|.++.......      .....+............+.....
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   71 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGL------GWSDREWSRRVGATAIMMLYHTAA   71 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHH------CCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhc------CccchHHHHHhhHHHHHHHHHHHH
Confidence            457899999999999999999999998643     556777765543311      111111110011111122222222


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .....|..+|+|.++........+.+ +.+..+.+..+|++.||.+++.+|..+|..
T Consensus        72 ~~l~~g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~  127 (193)
T 2rhm_A           72 TILQSGQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRIA  127 (193)
T ss_dssp             HHHHTTCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHhCCCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence            22224668999998844333445655 666667788889999999999999988763

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.71  E-value=3.6e-16  Score=112.82  Aligned_cols=122  Identities=20%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCC--CccccCchhhhhHHHHHHHHHH-HHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSH--DIFRVDNTEGYNIRQLSAREAQ-EDA   81 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~   81 (143)
                      +|.+|+|+|+|||||||+|+.|++.+    .....++.|.++........+.  ++.    .......    ...+ ..+
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~----~~~~~~~----~~~~~~~~   68 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYT----KKKEGIV----TGMQFDTA   68 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CC----HHHHHHH----HHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccc----hhhhhHH----HHHHHHHH
Confidence            36899999999999999999999864    1235667787766543211111  111    1111111    1112 222


Q ss_pred             HHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          82 TKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        82 ~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ...+.  ..+..+|+|+++.....|+.|.+ +++..++++.+|++.||.+++.+|+.+|.
T Consensus        69 ~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~-~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  127 (301)
T 1ltq_A           69 KSILYGGDSVKGVIISDTNLNPERRLAWET-FAKEYGWKVEHKVFDVPWTELVKRNSKRG  127 (301)
T ss_dssp             HHHTTSCTTCCEEEECSCCCCHHHHHHHHH-HHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred             HHHHhhccCCCEEEEeCCCCCHHHHHHHHH-HHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence            33341  45789999999999989999998 88888899889999999999999999886

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.70  E-value=4.2e-16  Score=104.36  Aligned_cols=128  Identities=15%  Similarity=0.127  Sum_probs=75.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhc----CCCCccccCc-hhhhhHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELY----NSHDIFRVDN-TEGYNIRQLSAREAQ   78 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~   78 (143)
                      |++.+|+++|+|||||||+|+.|++.++..+   ..++.|.++.......    .+.++..... ......+. .... +
T Consensus         1 m~~~~i~l~G~~GsGKST~a~~La~~l~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~   75 (178)
T 1qhx_A            1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPW---LAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRA-LEGA-W   75 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSSSCE---EEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHH-HHHH-H
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCCe---EEeccchHhhhcchhhccchhhccccCCCccccchhHHH-HHHH-H
Confidence            4678999999999999999999999986432   2345676654422210    0011100000 00111111 1111 1


Q ss_pred             HHHHHHHhcCCeEEEEeCCch-hHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          79 EDATKWLKNDGEVAIIDGTTA-TMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        79 ~~~~~~l~~~~~~vi~d~~~~-~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ...+..+...|..+|+|+++. ....++.+.+ .++.  ..+.+|++.||.+++.+|...|.
T Consensus        76 ~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~-~~~~--~~~~~v~l~~~~e~l~~R~~~r~  134 (178)
T 1qhx_A           76 AEGVVAMARAGARIIIDDVFLGGAAAQERWRS-FVGD--LDVLWVGVRCDGAVAEGRETARG  134 (178)
T ss_dssp             HHHHHHHHHTTCEEEEEECCTTTHHHHHHHHH-HHTT--CCEEEEEEECCHHHHHHHHHHTS
T ss_pred             HHHHHHHHhcCCeEEEEeccccChHHHHHHHH-HhcC--CcEEEEEEECCHHHHHHHHHhhC
Confidence            222223333467899999875 4455667777 6643  45667888899999999998775

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.70  E-value=5.7e-17  Score=122.24  Aligned_cols=105  Identities=18%  Similarity=0.257  Sum_probs=80.6

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      ...+.+|+|+|+|||||||+|+.|++.+++.+++     .|.+.           .+               ..+...+.
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~-----~D~~~-----------~~---------------~~~~~~~~  303 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN-----RDTLG-----------SW---------------QRCVSSCQ  303 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC-----GGGSC-----------SH---------------HHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc-----cchHH-----------HH---------------HHHHHHHH
Confidence            3457899999999999999999999887655443     33221           00               01112222


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ..+. .+..+|+|+++.....|..+.+ +++++++.+.+|++.+|.+++.+|+.+|..
T Consensus       304 ~~l~-~g~~vIiD~~~~~~~~r~~~~~-~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~  359 (416)
T 3zvl_A          304 AALR-QGKRVVIDNTNPDVPSRARYIQ-CAKDAGVPCRCFNFCATIEQARHNNRFREM  359 (416)
T ss_dssp             HHHH-TTCCEEEESCCCSHHHHHHHHH-HHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHh-cCCcEEEeCCCCCHHHHHHHHH-HHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence            2333 4778999999999999999999 999999999999999999999999999864

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.70  E-value=4.6e-16  Score=110.09  Aligned_cols=128  Identities=17%  Similarity=0.233  Sum_probs=83.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhc-CCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELY-NSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      ++|.+|+++|+|||||||+|+.|++.++.   ....++.|.++....... -..+ +.....+   +...........+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~---~~~~~~~D~~r~~~~~~~~i~~~-~g~~~~~---~~~~~~~~~~~~~~  102 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG---NIVIIDGDSFRSQHPHYLELQQE-YGKDSVE---YTKDFAGKMVESLV  102 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTTT---CCEEECGGGGGTTSTTHHHHHTT-CSSTTHH---HHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcCC---CcEEEecHHHHHhchhHHHHHHH-cCchHHH---HhhHHHHHHHHHHH
Confidence            45789999999999999999999998752   234556666654321100 0000 1110011   01100112223333


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..+...+..+|+|+++.....+..+.+ .+++.++.+.++.+.+|.+++.+|..+|.
T Consensus       103 ~~~~~~g~~vVid~~~~~~~~~~~~~~-~l~~~g~~v~lv~l~~~~e~~~~R~~~R~  158 (253)
T 2p5t_B          103 TKLSSLGYNLLIEGTLRTVDVPKKTAQ-LLKNKGYEVQLALIATKPELSYLSTLIRY  158 (253)
T ss_dssp             HHHHHTTCCEEEECCTTSSHHHHHHHH-HHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEeCCCCCHHHHHHHHH-HHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence            333334668999999988878888888 88888999988888999999999998874

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.70  E-value=6.7e-17  Score=108.61  Aligned_cols=122  Identities=15%  Similarity=0.089  Sum_probs=71.4

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh---hhhhhcCCCCccccCchhhhhHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR---KHLELYNSHDIFRVDNTEGYNIRQLSAREAQE   79 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
                      +|++.+|+|+|+|||||||+|+.|++.++...+    ...+....   ..+.  .+.+.|...  +  .....    ...
T Consensus         2 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i----~d~~~~g~~i~~~~~--~g~~~~~~~--~--~~~~~----~~~   67 (183)
T 2vli_A            2 PMRSPIIWINGPFGVGKTHTAHTLHERLPGSFV----FEPEEMGQALRKLTP--GFSGDPQEH--P--MWIPL----MLD   67 (183)
T ss_dssp             ---CCEEEEECCC----CHHHHHHHHHSTTCEE----CCTHHHHHHHHHTST--TCCSCGGGS--T--THHHH----HHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE----EchhhhHHHHHHhCc--cccchhhhh--H--HHHHH----HHH
Confidence            567889999999999999999999999875433    12222111   1111  111112111  1  01111    111


Q ss_pred             HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+...+...+..+|+|+++...+.++.+.+ .+++.+..+.+|++.||.+++.+|...|.
T Consensus        68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~-~l~~~~~~~~~i~l~~~~e~~~~R~~~R~  126 (183)
T 2vli_A           68 ALQYASREAAGPLIVPVSISDTARHRRLMS-GLKDRGLSVHHFTLIAPLNVVLERLRRDG  126 (183)
T ss_dssp             HHHHHHHHCSSCEEEEECCCCHHHHHHHHH-HHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred             HHHHHHHhCCCcEEEeeeccCHHHHHHHHH-HHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence            122233444678889999888877877777 77777777677888999999999988774

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.68  E-value=1.5e-15  Score=102.49  Aligned_cols=123  Identities=21%  Similarity=0.235  Sum_probs=85.2

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .+++.+|+++|+|||||||+++.|++.+...+.+..++..|.++.....    ...|...  +.    ...... +....
T Consensus        10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~----~~~~~~~--~r----~~~~~~-~~~~~   78 (186)
T 2yvu_A           10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSE----GAGFTRE--ER----LRHLKR-IAWIA   78 (186)
T ss_dssp             CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTT----TCCCCHH--HH----HHHHHH-HHHHH
T ss_pred             cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhh----ccCCChh--hH----HHHHHH-HHHHH
Confidence            4567899999999999999999999999877777777777777543321    1112211  11    101111 11222


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      ..+...|..+|+|.++.....|+.+.+ ++...+.+..+|++.||.+++.+|...
T Consensus        79 ~~~~~~g~~vi~d~~~~~~~~r~~~~~-~~~~~~~~~~~v~L~~~~e~~~~R~~~  132 (186)
T 2yvu_A           79 RLLARNGVIVICSFVSPYKQARNMVRR-IVEEEGIPFLEIYVKASLEEVIRRDPK  132 (186)
T ss_dssp             HHHHTTTCEEEEECCCCCHHHHHHHHH-HHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred             HHHHhCCCEEEEeCccccHHHHHHHHH-HhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence            223345778899998877778888888 888777788889999999999998643

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.67  E-value=6.1e-16  Score=111.43  Aligned_cols=130  Identities=17%  Similarity=0.197  Sum_probs=81.3

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .++|.+|+|+|+|||||||+|+.|++.++.   ....++.|.++.....-.....-+.....+   .............+
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~---~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~---~~~~~~~~~~~~~v  103 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDNDTFKQQHPNFDELVKLYEKDVVK---HVTPYSNRMTEAII  103 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTT---CCEEECTHHHHTTSTTHHHHHHHHGGGCHH---HHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechHhHHhchhhHHHHHHccchhhh---hhhHHHHHHHHHHH
Confidence            456789999999999999999999988731   234567777764321100000001110000   01111111122222


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHH----HHHhhhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEI----LEHNIKQS  139 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~r~~~r~  139 (143)
                      +.+...|..+|+|+++.....+..+.+ .+++.|+.+.++.+.+|.+.+    .+|...|.
T Consensus       104 ~~~l~~g~~vIld~~~~~~~~~~~~~~-~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~  163 (287)
T 1gvn_B          104 SRLSDQGYNLVIEGTGRTTDVPIQTAT-MLQAKGYETKMYVMAVPKINSYLGTIERYETMY  163 (287)
T ss_dssp             HHHHHHTCCEEECCCCCCSHHHHHHHH-HHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCeEEEECCCCCHHHHHHHHH-HHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence            222223778999999998887888888 888889998788889999998    67765553

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.65  E-value=2.1e-15  Score=101.98  Aligned_cols=128  Identities=13%  Similarity=0.137  Sum_probs=75.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-------ccccCchhhhhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-------IFRVDNTEGYNIRQLSARE   76 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~   76 (143)
                      |+|.+|+++|+|||||||+|+.|++.++..     .++.|++.+...... +..       ++.........+.......
T Consensus         1 M~~~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~   74 (196)
T 1tev_A            1 MKPLVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNP-DSQYGELIEKYIKEGKIVPVEITISLLKR   74 (196)
T ss_dssp             --CEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCT-TSTTHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhcc-CChHHHHHHHHHHCCCcCCHHHHHHHHHH
Confidence            568899999999999999999999998653     456666544322110 000       0100000000001111111


Q ss_pred             HHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          77 AQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        77 ~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+......+ ..+..+|+|+.+...+.++.|.. .+........+|++.||.+++.+|..+|.
T Consensus        75 ~~~~~~~~~-~~~~~vi~dg~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~e~~~~R~~~R~  135 (196)
T 1tev_A           75 EMDQTMAAN-AQKNKFLIDGFPRNQDNLQGWNK-TMDGKADVSFVLFFDCNNEICIERCLERG  135 (196)
T ss_dssp             HHHHHHHHC-TTCCEEEEESCCCSHHHHHHHHH-HHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHhhhccc-cCCCeEEEeCCCCCHHHHHHHHH-HhcccCCCCEEEEEECCHHHHHHHHHccc
Confidence            122222222 23668999999888887777776 65543233467888999999999998875

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=99.63  E-value=8.3e-16  Score=106.54  Aligned_cols=127  Identities=14%  Similarity=0.125  Sum_probs=75.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQED   80 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~   80 (143)
                      .++++|++.|+|||||||+|+.|++.++..++     +.++..+......  .+.   .......+..+...+....+.+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI-----stGdllR~~i~~~--t~lg~~~~~~~~~G~lVpde~~~~lv~~   99 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL-----SSGDLLRAEVQSG--SPKGKELKAMMERGELVPLEVVLALLKE   99 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE-----CHHHHHHHHHTTC--CHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE-----cHHHHHHHHHHcC--CchHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            35789999999999999999999999986554     5555555433211  000   0000001111111122222222


Q ss_pred             HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      .+.........+|+|+++.+..+.+.|.+ ...   -...+|.+.||++++.+|...|..+
T Consensus       100 ~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~-~~~---~~~~vi~l~v~~e~~~~Rl~~R~~~  156 (217)
T 3umf_A          100 AMIKLVDKNCHFLIDGYPRELDQGIKFEK-EVC---PCLCVINFDVSEEVMRKRLLKRAET  156 (217)
T ss_dssp             HHHHHTTTCSEEEEETBCSSHHHHHHHHH-HTC---CCSEEEEEECCHHHHHHHHSCC---
T ss_pred             HHhhccccccCcccccCCCcHHHHHHHHH-hCC---ccCEEEeccCCHHHHHHHHhccccc
Confidence            22222234567999999999887776665 332   2335678899999999999888653

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.63  E-value=5.6e-16  Score=104.66  Aligned_cols=127  Identities=15%  Similarity=0.234  Sum_probs=77.1

Q ss_pred             CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHH
Q psy2713           1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAR   75 (143)
Q Consensus         1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~   75 (143)
                      |..+++.+|+|+|+|||||||+|+.|++.++..     .++.|++.+........     .+++......    ......
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~   71 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWV-----HLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV----PSIVTV   71 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCC----CHHHHH
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCC----CHHHHH
Confidence            566778899999999999999999999998753     45666544332210000     0001000000    000111


Q ss_pred             HHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          76 EAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        76 ~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..+...+.  ...+..+|+|+.+.....+..|.. .+.....+..+|.+.||.+++.+|...|.
T Consensus        72 ~~l~~~i~--~~~~~~vi~d~~~~~~~~~~~~~~-~~~~~~~~~~vi~l~~~~e~~~~R~~~R~  132 (194)
T 1qf9_A           72 KLLKNAID--ANQGKNFLVDGFPRNEENNNSWEE-NMKDFVDTKFVLFFDCPEEVMTQRLLKRG  132 (194)
T ss_dssp             HHHHHHHH--TSTTCCEEEETCCCSHHHHHHHHH-HHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHH--hcCCCCEEEeCcCCCHHHHHHHHH-HHhccCCCCEEEEEECCHHHHHHHHHhcc
Confidence            11221111  224678999998888877777776 66532233457888999999999988875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.63  E-value=9.1e-15  Score=100.65  Aligned_cols=125  Identities=17%  Similarity=0.205  Sum_probs=80.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc-cccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI-FRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      ++|+|.|+|||||||+|+.|++.++..++     +.++..+........... .......+..+...+.   ..-+.+.+
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~~~g~~~i-----stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv---~~lv~~~l   72 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAKEKGFVHI-----STGDILREAVQKGTPLGKKAKEYMERGELVPDDLI---IALIEEVF   72 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHCCEEE-----EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHH---HHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCeEE-----cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHH---HHHHHHhh
Confidence            47899999999999999999999986554     666655543321100000 0000001111111111   12222333


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhcc
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      .. ...+|+|+++.+..+.+.|.. .+.+.+..+ .++++.||++++++|...|+-+
T Consensus        73 ~~-~~~~ilDGfPRt~~Qa~~l~~-~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~  127 (206)
T 3sr0_A           73 PK-HGNVIFDGFPRTVKQAEALDE-MLEKKGLKVDHVLLFEVPDEVVIERLSGRRIN  127 (206)
T ss_dssp             CS-SSCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred             cc-CCceEecCCchhHHHHHHHHh-hHHHhccccceeeecCCCHHHHHHHHhCCccc
Confidence            33 346999999999999999988 887777655 6788899999999999988643

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.62  E-value=1.6e-15  Score=103.59  Aligned_cols=114  Identities=12%  Similarity=0.118  Sum_probs=72.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhh--hhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHL--ELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      +.+|+|+|+|||||||+|+.|++.++...+     +.|.+.....  ....+.. +...  ..        ...+..+.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i-----~~d~~~~~~~~~~~~~g~~-~~~~--~~--------~~~~~~l~~   81 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI-----EGDALHPPENIRKMSEGIP-LTDD--DR--------WPWLAAIGE   81 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHHTCCEE-----EGGGGCCHHHHHHHHHTCC-CCHH--HH--------HHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCEEE-----eCCcCcchhhHHHHhcCCC-CCch--hh--------HHHHHHHHH
Confidence            568999999999999999999999875544     4444421100  0000111 1110  00        011222222


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+ ..+..+|+|+++.....++.+.+ .+   +.++.+|++.||.+++.+|..+|..
T Consensus        82 ~~-~~~~~vivd~~~~~~~~~~~l~~-~~---~~~~~vi~l~~~~e~~~~Rl~~R~~  133 (202)
T 3t61_A           82 RL-ASREPVVVSCSALKRSYRDKLRE-SA---PGGLAFVFLHGSESVLAERMHHRTG  133 (202)
T ss_dssp             HH-TSSSCCEEECCCCSHHHHHHHHH-TS---TTCCEEEEEECCHHHHHHHHHHHHS
T ss_pred             HH-hcCCCEEEECCCCCHHHHHHHHH-hc---CCCeEEEEEeCCHHHHHHHHHHhhc
Confidence            22 34678999999988887777766 43   4456678889999999999988853

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.57  E-value=3e-15  Score=102.20  Aligned_cols=126  Identities=21%  Similarity=0.246  Sum_probs=75.0

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREA   77 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   77 (143)
                      +.++++|+|+|+|||||||+|+.|++.++..     .++.|++.+.......     ..+++.. +.   ..........
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~---~~~~~~~~~~   87 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDA-GD---LVPSDLTNEL   87 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHH-TC---CCCHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHc-CC---cccHHHHHHH
Confidence            4567899999999999999999999998754     4566665443211000     0000100 00   0000000111


Q ss_pred             HHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713          78 QEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        78 ~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +.+.+.... .+..+|+|+.+.....++.+.. ++.+.+. +..+|++.||.+++.+|...|.
T Consensus        88 ~~~~~~~~~-~~~~vIldg~~~~~~~~~~l~~-~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~  148 (201)
T 2cdn_A           88 VDDRLNNPD-AANGFILDGYPRSVEQAKALHE-MLERRGTDIDAVLEFRVSEEVLLERLKGRG  148 (201)
T ss_dssp             HHHHTTSGG-GTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred             HHHHHhccc-CCCeEEEECCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            111111112 2446899998777777777777 7766554 3367888999999999988774

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.57  E-value=3.8e-14  Score=111.12  Aligned_cols=121  Identities=17%  Similarity=0.198  Sum_probs=81.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      +++.+|+|+|+|||||||+|+.|+++|...++....+..|.++.....    ...|...  +    +...... +.++..
T Consensus        50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~----~~~fs~~--d----ree~~r~-i~eva~  118 (630)
T 1x6v_B           50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK----NLGFSPE--D----REENVRR-IAEVAK  118 (630)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTT----TCCSSHH--H----HHHHHHH-HHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCc----cccCChh--h----hHHHHHH-HHHHHH
Confidence            478899999999999999999999998555555445555555433211    1123211  1    1111111 222333


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      .+...|.++|.|+.......|+.+.+ +++..+.++++|++.||.+++.+|..
T Consensus       119 ~~l~~G~iVI~d~~s~~~~~r~~~r~-ll~~~g~p~~vV~Ldap~Evl~~Rl~  170 (630)
T 1x6v_B          119 LFADAGLVCITSFISPYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDV  170 (630)
T ss_dssp             HHHHTTCEEEEECCCCCHHHHHHHHH-HHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred             HHHhCCCEEEEeCchhhHHHHHHHHH-HHHhCCCCeEEEEEECCHHHHHHHhc
Confidence            33345788888876666667888888 88877888889999999999999975

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.57  E-value=7.3e-14  Score=96.11  Aligned_cols=120  Identities=19%  Similarity=0.161  Sum_probs=76.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .++.+|+++|+|||||||+++.|++.++ ..|++...++.|.++.....   ...++.   .+    +..........+.
T Consensus        23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~---~~~~~~---~~----r~~~~~~~~~~~~   92 (211)
T 1m7g_A           23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK---DLGFSE---AD----RNENIRRIAEVAK   92 (211)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT---TCCSSH---HH----HHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc---ccCCCH---HH----HHHHHHHHHHHHH
Confidence            4568999999999999999999999987 55655666666666533211   111111   11    1111111111122


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHh------hcCCEEEEEEeecCcHHHHHHh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFAR------KMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                      ..+. .|..||+|........++.+.+ ++.      ..+.+..+|++.||.+++.+|.
T Consensus        93 ~~l~-~g~~VI~d~~~~~~~~~~~l~~-l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A           93 LFAD-SNSIAITSFISPYRKDRDTARQ-LHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             HHHH-TTCEEEEECCCCCHHHHHHHHH-HHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             HHHH-CCCEEEEecCCccHHHHHHHHH-HhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            2233 4778999976555567777777 776      3456788899999999999984

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.56  E-value=2.9e-14  Score=95.18  Aligned_cols=118  Identities=14%  Similarity=0.150  Sum_probs=68.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh-hhh-cCCCCccccCchhhhhHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH-LEL-YNSHDIFRVDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      ++..+|+++|+|||||||+++.|+..++..     .++.|++.... ... ..+.. +..  .......     ..++.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~-----~i~~d~~~~~~~~~~~~~g~~-~~~--~~~~~~~-----~~~~~~   72 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEP-LND--DDRKPWL-----QALNDA   72 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCE-----EEEGGGGCCHHHHHHHHTTCC-CCH--HHHHHHH-----HHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhhCcE-----EEeCccccchHHHHHhhcCcC-CCc--cccccHH-----HHHHHH
Confidence            456799999999999999999999988654     34445442210 000 01111 110  1111000     112222


Q ss_pred             HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ...+...+..+|+|+++..++.++.+     ++.+.++.+|++.||.+++.+|..+|.
T Consensus        73 ~~~~~~~~~~~vi~~~~~~~~~~~~l-----~~~~~~~~vv~l~~~~e~~~~R~~~R~  125 (175)
T 1knq_A           73 AFAMQRTNKVSLIVCSALKKHYRDLL-----REGNPNLSFIYLKGDFDVIESRLKARK  125 (175)
T ss_dssp             HHHHHHHCSEEEEECCCCSHHHHHHH-----HTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred             HHHHHhcCCcEEEEeCchHHHHHHHH-----HhcCCCEEEEEEECCHHHHHHHHHhcc
Confidence            22222235688999887766554443     334445667888999999999998875

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.55  E-value=8.7e-14  Score=92.24  Aligned_cols=121  Identities=15%  Similarity=0.164  Sum_probs=71.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHH-HHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQ-EDATKWL   85 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l   85 (143)
                      ++|+++|+|||||||+|+.| +.++..     .++.|++.+...... +.+.. ........++.......+ ..+...+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l   73 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIE-AKPGE-RLMDFAKRLREIYGDGVVARLCVEEL   73 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHH-C---C-CHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhc-CCChh-HHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence            58999999999999999999 776543     556666555433221 10000 000000001110000111 1122333


Q ss_pred             -hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          86 -KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        86 -~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                       ...+..+|+|+. .....++.+.+ .+.   .+..+|++.+|.+++.+|...|..
T Consensus        74 ~~~~~~~vi~dg~-~~~~~~~~l~~-~~~---~~~~~i~l~~~~~~~~~R~~~R~~  124 (179)
T 3lw7_A           74 GTSNHDLVVFDGV-RSLAEVEEFKR-LLG---DSVYIVAVHSPPKIRYKRMIERLR  124 (179)
T ss_dssp             CSCCCSCEEEECC-CCHHHHHHHHH-HHC---SCEEEEEEECCHHHHHHHHHTCC-
T ss_pred             HhcCCCeEEEeCC-CCHHHHHHHHH-HhC---CCcEEEEEECCHHHHHHHHHhccC
Confidence             245778999998 77777777776 553   556778889999999999988753

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=99.55  E-value=6.6e-14  Score=109.19  Aligned_cols=122  Identities=16%  Similarity=0.144  Sum_probs=84.6

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCC-CCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTD-HKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      .+++.+|+|+|+|||||||+|+.|++.|+..| .....+..|.++.....    ...|+..  +.    ... ...+..+
T Consensus       393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~----~~~f~~~--er----~~~-i~ri~~v  461 (573)
T 1m8p_A          393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSS----ELGFTRE--DR----HTN-IQRIAFV  461 (573)
T ss_dssp             TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCT----TCCCSHH--HH----HHH-HHHHHHH
T ss_pred             cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhcc----ccCCChh--HH----HHH-HHHHHHH
Confidence            34578999999999999999999999998655 66667777877664211    1123211  11    111 1112334


Q ss_pred             HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      ...+...|..||.|..+..+..|+.+.+ ++++.+ .++.|++.||.+++.+|+.+
T Consensus       462 ~~~~~~~g~~VI~~~is~~~~~R~~~r~-l~~~~g-~~~~V~Lda~~ev~~~R~~r  515 (573)
T 1m8p_A          462 ATELTRAGAAVIAAPIAPYEESRKFARD-AVSQAG-SFFLVHVATPLEHCEQSDKR  515 (573)
T ss_dssp             HHHHHHTTCEEEEECCCCCHHHHHHHHH-HHHTTS-EEEEEEECCCHHHHHHHCSS
T ss_pred             HHHHHhCCCEEEEEcCCCcHHHHHHHHH-HHHhcC-CeEEEEEeCCHHHHHHHhcc
Confidence            4444445788999988888888888888 877644 57788999999999999643

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.54  E-value=1.4e-13  Score=93.95  Aligned_cols=118  Identities=14%  Similarity=0.109  Sum_probs=78.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      .++.+|+++|+|||||||+++.|+..+...|.-...+..|+++.....   ... +..  .+.....     ..+..+..
T Consensus        23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~---~~~-~~~--~~~~~~~-----~~~~~~~~   91 (200)
T 3uie_A           23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR---DLS-FKA--EDRAENI-----RRVGEVAK   91 (200)
T ss_dssp             SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT---TCC-SSH--HHHHHHH-----HHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc---ccC-cCh--HHHHHHH-----HHHHHHHH
Confidence            456899999999999999999999998654543335666666543211   111 211  1111111     11223333


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                      .+...+..+|.++.+..++.|+.+.+ ++.  +..+..|++.+|.+++.+|.
T Consensus        92 ~~~~~~~~vi~~~~~~~~~~r~~~~~-~~~--~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A           92 LFADAGIICIASLISPYRTDRDACRS-LLP--EGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             HHHHTTCEEEEECCCCCHHHHHHHHH-TSC--TTSEEEEEECCCHHHHHHHC
T ss_pred             HHHhCCceEEEecCCchHHHHHHHHH-hcC--CCCEEEEEEeCCHHHHHHhc
Confidence            34445788999999888888888887 665  34567788999999999997

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.54  E-value=2.7e-14  Score=97.52  Aligned_cols=118  Identities=15%  Similarity=0.092  Sum_probs=69.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh--hcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE--LYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      ++.+|+|+|+|||||||+++.|+..++...     ++.|.+......  ...+.. +..  ....  ..   ...++...
T Consensus        28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~-----i~~d~~~~~~~~~~~~~g~~-~~~--~~~~--~~---~~~~~~~~   94 (200)
T 4eun_A           28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF-----AEADAFHSPENIATMQRGIP-LTD--EDRW--PW---LRSLAEWM   94 (200)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHCCEE-----EEGGGGSCHHHHHHHHTTCC-CCH--HHHH--HH---HHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCeE-----EcccccccHHHHHHHhcCCC-CCC--cccc--cH---HHHHHHHH
Confidence            457999999999999999999999886543     444443221000  000111 111  1100  00   01122222


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ......+..+|+|+.+..++.++.+.+ .    ..++.+|++.||.+++.+|..+|..
T Consensus        95 ~~~~~~g~~viid~~~~~~~~~~~l~~-~----~~~~~vv~l~~~~e~l~~Rl~~R~~  147 (200)
T 4eun_A           95 DARADAGVSTIITCSALKRTYRDVLRE-G----PPSVDFLHLDGPAEVIKGRMSKREG  147 (200)
T ss_dssp             HHHHHTTCCEEEEECCCCHHHHHHHTT-S----SSCCEEEEEECCHHHHHHHHTTCSC
T ss_pred             HHHHhcCCCEEEEchhhhHHHHHHHHH-h----CCceEEEEEeCCHHHHHHHHHhccc
Confidence            222234667889998887766655544 3    2345678889999999999987753

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.53  E-value=1.3e-14  Score=98.30  Aligned_cols=122  Identities=16%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQE   79 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
                      ++.+|+++|+|||||||+|+.|++.++..     .++.|++.+.......  +   .+++. .+..   .........+.
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~   78 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIME-KGQL---VPLETVLDMLR   78 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCC---CCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHH-cCCc---CCHHHHHHHHH
Confidence            46799999999999999999999998754     4455554333211000  0   00010 0000   00001111222


Q ss_pred             HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..+......+..+|+|+.+...+.++.|.. .+   ..+..+|++.||.+++.+|...|.
T Consensus        79 ~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~-~~---~~~~~vi~l~~~~e~~~~R~~~R~  134 (196)
T 2c95_A           79 DAMVAKVNTSKGFLIDGYPREVQQGEEFER-RI---GQPTLLLYVDAGPETMTQRLLKRG  134 (196)
T ss_dssp             HHHHHHTTTCSCEEEESCCCSHHHHHHHHH-HT---CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHhccccCCcEEEeCCCCCHHHHHHHHH-hc---CCCCEEEEEECCHHHHHHHHHccC
Confidence            222222224678999997776666655555 44   223356778899999999988775

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.53  E-value=4.6e-14  Score=95.77  Aligned_cols=123  Identities=16%  Similarity=0.159  Sum_probs=71.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQE   79 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
                      ++.+|+++|+|||||||+|+.|+++++.     ..++.|++.+.......     -.+++.. +..   .........+.
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~-----~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~   81 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF-----THLSTGELLREELASESERSKLIRDIMER-GDL---VPSGIVLELLK   81 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCC---CCHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCC-----eEEcHHHHHHHHHHhCCHHHHHHHHHHHc-CCc---CCHHHHHHHHH
Confidence            3579999999999999999999999874     34566665433221000     0011110 000   00011111122


Q ss_pred             HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ..+......+..+|+|+.+...+.+..|.+ .+   +.+..+|++.||.+++.+|..+|..
T Consensus        82 ~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~-~~---~~~~~~i~l~~~~~~~~~R~~~R~~  138 (199)
T 2bwj_A           82 EAMVASLGDTRGFLIDGYPREVKQGEEFGR-RI---GDPQLVICMDCSADTMTNRLLQMSR  138 (199)
T ss_dssp             HHHHHHTTSCSCEEEETCCSSHHHHHHHHH-HT---CCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred             HHHhcccccCccEEEeCCCCCHHHHHHHHH-hc---CCCCEEEEEECCHHHHHHHHHcCCC
Confidence            222222224678999998887777666655 32   2233567888999999999887753

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.52  E-value=2.9e-14  Score=98.22  Aligned_cols=120  Identities=14%  Similarity=0.204  Sum_probs=74.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .|+|+|+|||||||+|+.|++.++..     .++.|++.+........     ..++...    ...........+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~l   72 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNGTELGLKAKSFMDQG----NLVPDEVTIGIVHERL   72 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHT----CCCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCC----CCCCHHHHHHHHHHHH
Confidence            58899999999999999999998654     45666654443221100     0000000    0000001111111111


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r  138 (143)
                      .. ...+..+|+|+.+........+.+ .+...+... .+|.+.+|.+++.+|..+|
T Consensus        73 ~~-~~~~~~~ildg~p~~~~~~~~l~~-~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3fb4_A           73 SK-DDCQKGFLLDGFPRTVAQADALDS-LLTDLGKKLDYVLNIKVEQEELMKRLTGR  127 (216)
T ss_dssp             TS-GGGTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred             hc-ccCCCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence            11 123567999998888888888887 777666544 6788899999999999888

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.52  E-value=1.2e-13  Score=92.86  Aligned_cols=120  Identities=19%  Similarity=0.224  Sum_probs=71.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQ   78 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
                      +++.+|+++|+|||||||+|+.|++.++..     .++.|++.+.......     ..+++......    ....   ..
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~---~~   69 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQELGFK-----KLSTGDILRDHVARGTPLGERVRPIMERGDLV----PDDL---IL   69 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHHTTCHHHHHHHHHHHTTCCC----CHHH---HH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCe-----EecHHHHHHHHHHcCChHHHHHHHHHHcCCcC----CHHH---HH
Confidence            346799999999999999999999988754     3455544332211000     00011100000    0000   01


Q ss_pred             HHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713          79 EDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        79 ~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..+...+..   .+|+|+......++..+.. ++.+.+. +..+|++.||.+++.+|...|.
T Consensus        70 ~~~~~~l~~---~~i~dg~~~~~~~~~~l~~-~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~  127 (186)
T 3cm0_A           70 ELIREELAE---RVIFDGFPRTLAQAEALDR-LLSETGTRLLGVVLVEVPEEELVRRILRRA  127 (186)
T ss_dssp             HHHHHHCCS---EEEEESCCCSHHHHHHHHH-HHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHhcC---CEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence            111122222   3899998877776766666 7766664 3467888999999999988774

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.52  E-value=2.2e-14  Score=98.83  Aligned_cols=120  Identities=13%  Similarity=0.196  Sum_probs=74.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .|+|+|+|||||||+|+.|++.++..     .++.|++.+........     .+++....    ..........+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~l   72 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGE----LVPDEVTIGIVKERL   72 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTC----CCCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Confidence            58899999999999999999987643     55676655543221100     00011000    000001111111111


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r  138 (143)
                      .. ...+..+|+|+.+........+.+ .+...+... .++.+.+|.+++.+|..+|
T Consensus        73 ~~-~~~~~~~ildg~p~~~~~~~~~~~-~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R  127 (216)
T 3dl0_A           73 GK-DDCERGFLLDGFPRTVAQAEALEE-ILEEMGKPIDYVINIQVDKDVLMERLTGR  127 (216)
T ss_dssp             TS-GGGTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred             hc-ccccCCEEEeCCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence            11 123667999998888888888887 777666544 6788899999999999988

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.51  E-value=7.8e-14  Score=96.46  Aligned_cols=124  Identities=16%  Similarity=0.193  Sum_probs=72.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQED   80 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
                      +.+|+|+|+|||||||+|+.|++.++.     ..++.|++.+.......     ..+++.....    .........+..
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~----~~~~~~~~~l~~   74 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFHA-----AHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL----VSDDIMVNMIKD   74 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCC----CCHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEehhHHHHHHHHcCChHHHHHHHHHHCCCc----CCHHHHHHHHHH
Confidence            568999999999999999999999875     35566665443211000     0001110000    000011111222


Q ss_pred             HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhh
Q psy2713          81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+......+..+|+|+......+++.+.. ++.+.+... .+|++.+|.+++.+|...|.
T Consensus        75 ~l~~~~~~~~~~i~dg~~~~~~~~~~l~~-~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~  133 (220)
T 1aky_A           75 ELTNNPACKNGFILDGFPRTIPQAEKLDQ-MLKEQGTPLEKAIELKVDDELLVARITGRL  133 (220)
T ss_dssp             HHHHCGGGGSCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HHHhccccCCCeEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence            22111112456899987666666666666 666555443 67888999999999988775

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.51  E-value=4.1e-14  Score=99.55  Aligned_cols=124  Identities=15%  Similarity=0.137  Sum_probs=77.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQ   78 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~   78 (143)
                      .+|.+|+|+|+|||||||+|+.|++.++..     .++.|+..+.......  +   ..++...    ..+........ 
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~-----~is~~~~~r~~~~~~~~~g~~i~~~~~~g----~~~~~~~~~~~-   96 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYC-----HLSTGDLLREAAEKKTELGLKIKNIINEG----KLVDDQMVLSL-   96 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTTSSSHHHHHHHHHHHTT----CCCCHHHHHHH-
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EEecHHHHHHHHhccchHHHHHHHHHhcC----CCCcHHHHHHH-
Confidence            357899999999999999999999998643     4566665444221100  0   0000000    00000111111 


Q ss_pred             HHHHHHH--hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713          79 EDATKWL--KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        79 ~~~~~~l--~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~  140 (143)
                        +...+  ...+..+|+|+......+...+.+ ++...+... .++.+.+|.+++++|...|..
T Consensus        97 --~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~-~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~  158 (243)
T 3tlx_A           97 --VDEKLKTPQCKKGFILDGYPRNVKQAEDLNK-LLQKNQTKLDGVFYFNVPDEVLVNRISGRLI  158 (243)
T ss_dssp             --HHHHTTSGGGSSEEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred             --HHHHHhcccccCCEEecCCCCcHHHHHHHHH-HHHHcCCCCceEEEEeCCHHHHHHHHHcCCC
Confidence              12222  123668999998888888888877 776655433 677889999999999998864

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=99.48  E-value=1.2e-12  Score=87.60  Aligned_cols=122  Identities=18%  Similarity=0.220  Sum_probs=71.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      ++..+|+++|++||||||+++.|+..+...+++...+..+.++.....   ... +.....+. .++     . +.....
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~---~~~-~~~~~~~~-~~~-----~-~~~~~~   71 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK---NLG-FSPEDREE-NVR-----R-IAEVAK   71 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT---TCC-SSHHHHHH-HHH-----H-HHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh---ccc-cccccHHH-HHH-----H-HHHHHH
Confidence            456799999999999999999999988444544444455554432111   011 11100111 111     1 111112


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                      .+.+.+..++.+........+..+.+ +++..+.+..+|++.||.+++.+|..+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~e~~~~R~~~  124 (179)
T 2pez_A           72 LFADAGLVCITSFISPYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDVK  124 (179)
T ss_dssp             HHHHTTCEEEEECCCCCHHHHHHHHH-HHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred             HHHHCCCEEEEecCCcchHHHHHHHH-HhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence            23234655555655444445566666 666667777889999999999999654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.47  E-value=2.4e-13  Score=92.76  Aligned_cols=123  Identities=15%  Similarity=0.154  Sum_probs=71.1

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-------ccccCchhhhhHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-------IFRVDNTEGYNIRQLSAR   75 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~   75 (143)
                      +.++.+|+|+|+|||||||+|+.|++.++.     ..++.|++.+...... +..       ++. .+.   ........
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~-----~~i~~d~~~~~~~~~~-~~~~~~~i~~~~~-~g~---~~~~~~~~   81 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSF-----VHLSAGDLLRAEQGRA-GSQYGELIKNCIK-EGQ---IVPQEITL   81 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSC-----EEEEHHHHHHHHHHST-TCSCHHHHHHHHH-TTC---CCCHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEeHHHHHHHHHhcc-CCHHHHHHHHHHH-cCC---cCCHHHHH
Confidence            345679999999999999999999998764     4556666544321100 100       010 000   00001111


Q ss_pred             HHHHHHH-HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          76 EAQEDAT-KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        76 ~~~~~~~-~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..+...+ ..+..++..+|+|+.+...+....+.. .+.  . ...+|++.||.+++.+|..+|.
T Consensus        82 ~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~-~~~--~-~~~~i~l~~~~e~~~~Rl~~R~  142 (203)
T 1ukz_A           82 ALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIV--E-SKFILFFDCPEDIMLERLLERG  142 (203)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHH-HTC--C-CSEEEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHH-hcC--C-CCEEEEEECCHHHHHHHHHhcc
Confidence            1222222 233444468899998776665555444 332  1 2356778899999999988774

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.47  E-value=2.4e-13  Score=93.96  Aligned_cols=123  Identities=13%  Similarity=0.117  Sum_probs=73.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCC-----CccccCchhhhhHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSH-----DIFRVDNTEGYNIRQLSAREAQED   80 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
                      .+.|+|+|+|||||||+|+.|++.++.     ..++.|++.+.........     +++.. +   ...........+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g---~~~~~~~~~~~i~~   75 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEYGL-----AHLSTGDMLREAIKNGTKIGLEAKSIIES-G---NFVGDEIVLGLVKE   75 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTC--CCHHHHHHHHH-T---CCCCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCc-----eEEehhHHHHHHHHcCCHHHHHHHHHHHC-C---CcCCHHHHHHHHHH
Confidence            468999999999999999999999864     3456666554432211000     00100 0   00000111111222


Q ss_pred             HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713          81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+... ..+..+|+|+...+..+.+.+.+ ++...+. +..+|++.||.+++.+|...|.
T Consensus        76 ~l~~~-~~~~~~i~dg~~~~~~~~~~l~~-~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  133 (217)
T 3be4_A           76 KFDLG-VCVNGFVLDGFPRTIPQAEGLAK-ILSEIGDSLTSVIYFEIDDSEIIERISGRC  133 (217)
T ss_dssp             HHHTT-TTTTCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred             HHhcc-ccCCCEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            11111 23567899988777666666666 6655553 3467888999999999988775

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=99.45  E-value=4.7e-12  Score=86.46  Aligned_cols=131  Identities=13%  Similarity=0.097  Sum_probs=67.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe--hhhhhhhhhhhcCCCCccccCchhhhhHH-HHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS--VSAYRRKHLELYNSHDIFRVDNTEGYNIR-QLSAREAQED   80 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   80 (143)
                      |++.+|+|+|+|||||||+|+.|++.++..+ +.....  .+...+..+........++   .....+. .......+..
T Consensus         2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~~~   77 (213)
T 2plr_A            2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNSSDWIHDIIKEAKKKDLLT---PLTFSLIHATDFSDRYER   77 (213)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTCCCHHHHHHHHHTTTSCCC---HHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCcHHHHHHHHhccccccCCC---HHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999999999998765 322111  1111112121110000011   1100000 0000011111


Q ss_pred             HHHHHhcCCeEEEEeCCchhHHHH--------HHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh-hhh
Q psy2713          81 ATKWLKNDGEVAIIDGTTATMEKR--------KQIHDYFARKMGFKVLFVELIVQDEEILEHNI-KQS  139 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~~~~r--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~-~r~  139 (143)
                      .+......+..+|+|.........        +.+.. +.+....+.++|++.+|.+++.+|.. +|.
T Consensus        78 ~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~  144 (213)
T 2plr_A           78 YILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKK-LYSFAIKPDITFYIRVSPDIALERIKKSKR  144 (213)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHH-HTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             HHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence            112222347789999876543221        22333 33322334457888899999999988 664

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=99.42  E-value=9.1e-13  Score=102.30  Aligned_cols=118  Identities=18%  Similarity=0.147  Sum_probs=81.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .+.+|+++|+|||||||+|+.|++.++..+.+..++..|.++.....    ...|...  +...    .... +......
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~----~~~f~~~--er~~----~l~~-i~~~~~~  439 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSR----GLGFSKE--DRIT----NILR-VGFVASE  439 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCT----TCCSSHH--HHHH----HHHH-HHHHHHH
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcc----cccccHH--HHHH----HHHH-HHHHHHH
Confidence            46899999999999999999999999887877778888877655321    1123211  1111    1111 2222233


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      +...|..+|+|+++..+..|+.+.+ ++++  ..+.+|++.||.+++.+|..
T Consensus       440 ~l~~G~~VI~d~~~~~~~~r~~~~~-~l~~--~d~~vV~L~~~~e~~~~Rl~  488 (546)
T 2gks_A          440 IVKHNGVVICALVSPYRSARNQVRN-MMEE--GKFIEVFVDAPVEVCEERDV  488 (546)
T ss_dssp             HHHTTCEEEEECCCCCHHHHHHHHT-TSCT--TCEEEEEEECCGGGHHHHCC
T ss_pred             HHhCCCEEEEEcCCCCHHHHHHHHH-Hhhc--CCEEEEEEeCCHHHHHHHhh
Confidence            3335779999998888888887777 6654  24567888899999999975

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.42  E-value=2.2e-12  Score=89.50  Aligned_cols=120  Identities=9%  Similarity=0.128  Sum_probs=70.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      ++|+|.|+|||||||+|+.|++.++.     ..++.|++.+.......  +   .+++.. +.   ..........+.  
T Consensus         1 m~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~~r~~~~~~~~~g~~i~~~~~~-g~---~~~~~~~~~~i~--   69 (223)
T 2xb4_A            1 MNILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGIFREHIGGGTELGKKAKEFIDR-GD---LVPDDITIPMVL--   69 (223)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHTTTTCHHHHHHHHHHTT-TC---CCCHHHHHHHHH--
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHHHHHHHHcCCHHHHHHHHHHHc-CC---cCcHHHHHHHHH--
Confidence            37999999999999999999999864     45677665444211000  0   000100 00   000011111121  


Q ss_pred             HHHHhc-CCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713          82 TKWLKN-DGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        82 ~~~l~~-~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                       ..+.. .+..+|+|+..........+.+ .+...+. +..++.+.+|.+++.+|...|.
T Consensus        70 -~~l~~~~g~~vIlDg~~~~~~~~~~l~~-~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~  127 (223)
T 2xb4_A           70 -ETLESKGKDGWLLDGFPRNTVQAQKLFE-ALQEKGMKINFVIEILLPREVAKNRIMGRR  127 (223)
T ss_dssp             -HHHHHHCTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred             -HHHhcccCCeEEEeCCcCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence             22211 1568999987766655666665 5544443 3367888999999999998875

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=99.40  E-value=1.2e-12  Score=88.16  Aligned_cols=45  Identities=20%  Similarity=0.195  Sum_probs=36.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      |++.+|+|+|+|||||||+++.|++.++..+++...++.|++.+.
T Consensus         1 M~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~   45 (192)
T 1kht_A            1 MKNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE   45 (192)
T ss_dssp             --CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence            356799999999999999999999999877766677887776544

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=99.39  E-value=5.2e-12  Score=86.52  Aligned_cols=38  Identities=21%  Similarity=0.338  Sum_probs=33.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      +++.+|+|+|+|||||||+++.|++.++..+++++.+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~   44 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   44 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence            34789999999999999999999999988888876664

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=99.38  E-value=5.8e-12  Score=84.76  Aligned_cols=41  Identities=17%  Similarity=0.315  Sum_probs=34.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ++|+|+|+|||||||+|+.|+++++..++....+..|++..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~   42 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML   42 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence            58999999999999999999999987777777777666543

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=99.37  E-value=6.7e-13  Score=92.62  Aligned_cols=124  Identities=15%  Similarity=0.126  Sum_probs=70.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQE   79 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
                      .+..|+|.|+|||||||+|+.|+++++.     ..++.|++.+.......     ..+++....    ..........+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~----~~~~~~~~~~i~   85 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV-----CHLATGDMLRAMVASGSELGKKLKATMDAGK----LVSDEMVLELIE   85 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHHHHHHTCHHHHHHHHHHHTTC----CCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC-----ceecHHHHHHHHHHcCChhHHHHHHHHHCCC----cCCHHHHHHHHH
Confidence            3468999999999999999999999874     34566655443211100     000010000    000011111121


Q ss_pred             HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcC-CEEEEEEeecCcHHHHHHhhhhh
Q psy2713          80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMG-FKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..+.. ...+..+|+|.......+.+.+.+ .+...+ .+..+|++.+|.+++.+|...|.
T Consensus        86 ~~l~~-~~~~~g~ildg~~~~~~~~~~l~~-~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~  144 (233)
T 1ak2_A           86 KNLET-PPCKNGFLLDGFPRTVRQAEMLDD-LMEKRKEKLDSVIEFSIPDSLLIRRITGRL  144 (233)
T ss_dssp             HHHTS-GGGTTCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred             HHHhc-ccccCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence            11111 112345889987666666666666 655433 34467888999999999988774

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=99.36  E-value=5e-12  Score=86.48  Aligned_cols=37  Identities=22%  Similarity=0.291  Sum_probs=33.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      ++.+|+|+|+|||||||+++.|++.++..+++++.+.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~   45 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY   45 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            4689999999999999999999999998888887664

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.35  E-value=1.4e-12  Score=88.85  Aligned_cols=112  Identities=16%  Similarity=0.146  Sum_probs=61.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      ..+|+++|+|||||||+++.|++.++..     .++.|++.....+.. ..++|...+..   ..    ...-..++..+
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~-i~~~~~~~~~~---~~----~~~e~~~l~~l   91 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKT-VGELFTERGEA---GF----RELERNMLHEV   91 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSC-HHHHHHHHHHH---HH----HHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCc-HHHHHHhcChH---HH----HHHHHHHHHHH
Confidence            4689999999999999999999998754     456666544422100 01112111110   01    11112223333


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      .. ...+|+++.......++.+.  .+.+   ...+|++.||.+++.+|..
T Consensus        92 ~~-~~~~vi~~ggg~~~~~~~~~--~l~~---~~~vi~L~~~~e~l~~Rl~  136 (199)
T 3vaa_A           92 AE-FENVVISTGGGAPCFYDNME--FMNR---TGKTVFLNVHPDVLFRRLR  136 (199)
T ss_dssp             TT-CSSEEEECCTTGGGSTTHHH--HHHH---HSEEEEEECCHHHHHHHHH
T ss_pred             hh-cCCcEEECCCcEEccHHHHH--HHHc---CCEEEEEECCHHHHHHHHh
Confidence            32 34566775443332222222  2222   1245777899999999987

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.35  E-value=3.6e-12  Score=85.58  Aligned_cols=109  Identities=17%  Similarity=0.194  Sum_probs=59.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      +..|+++|+|||||||+|+.|++.++..     .++.|.+.....+.. ..+.+...+   .......    -..+...+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~-~~~~~~~~g---~~~~~~~----~~~~~~~~   71 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGAD-IAWIFEMEG---EAGFRRR----EREMIEAL   71 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSC-HHHHHHHHH---HHHHHHH----HHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCC-hhhHHHHhC---HHHHHHH----HHHHHHHH
Confidence            5689999999999999999999998765     456666655432210 011111111   1111111    11222223


Q ss_pred             hcCCeEEEEeC--CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713          86 KNDGEVAIIDG--TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        86 ~~~~~~vi~d~--~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                      ......+|..+  .......++.+.+     .+   .+|++.+|.+++.+|.
T Consensus        72 ~~~~~~vi~~gg~~~~~~~~~~~l~~-----~~---~vi~L~~~~e~l~~Rl  115 (185)
T 3trf_A           72 CKLDNIILATGGGVVLDEKNRQQISE-----TG---VVIYLTASIDTQLKRI  115 (185)
T ss_dssp             HHSSSCEEECCTTGGGSHHHHHHHHH-----HE---EEEEEECCHHHHHHHH
T ss_pred             HhcCCcEEecCCceecCHHHHHHHHh-----CC---cEEEEECCHHHHHHHH
Confidence            22233333322  3344554444333     22   5677889999999987

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=99.34  E-value=2.3e-12  Score=89.81  Aligned_cols=120  Identities=16%  Similarity=0.157  Sum_probs=69.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQEDA   81 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (143)
                      +-+.+.|+|||||||+|+.|++.++..++     +.+++.+.......     ...++..    +..+...+....+.+.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i-----s~gdllR~~~~~~t~lG~~i~~~~~~----G~lvpdei~~~ll~~~   79 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFGIPQI-----STGDMLRAAVKAGTPLGVEAKTYMDE----GKLVPDSLIIGLVKER   79 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCCEE-----CHHHHHHHHHHTTCHHHHHHHHHHTT----TCCCCHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhCCCee-----echHHHHHhccCCChHHHHHHHHHhh----ccccccHHHHHHHHHH
Confidence            56889999999999999999999876544     55554443221100     0001110    0001111111222221


Q ss_pred             HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      +.. ......+|+|+++.+..+.+.|.+     .+. ...+|++.||++++.+|...|..+
T Consensus        80 l~~-~~~~~g~ILDGfPRt~~Qa~~L~~-----~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~  134 (230)
T 3gmt_A           80 LKE-ADCANGYLFDGFPRTIAQADAMKE-----AGVAIDYVLEIDVPFSEIIERMSGRRTH  134 (230)
T ss_dssp             HHS-GGGTTCEEEESCCCSHHHHHHHHH-----TTCCCSEEEEECCCHHHHHHHHHTEEEE
T ss_pred             HhC-cccCCCeEecCCCCcHHHHHHHHH-----hCCCccEEEEEeCCHHHHHHHHHcCCcc
Confidence            111 112346899999888766555443     232 336788999999999999998743

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=99.34  E-value=7.4e-13  Score=91.98  Aligned_cols=118  Identities=16%  Similarity=0.159  Sum_probs=65.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQE   79 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
                      ++.+|+|+|+|||||||+|+.|++.++..     .++.|++.+.......     ..+++.. +.   ..........  
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~---~~~~~~~~~~--   74 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHFELK-----HLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GK---LIPDDVMTRL--   74 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHSSSE-----EEEHHHHHHHHHHHTCHHHHHHHHHHTT-TC---CCCHHHHHHH--
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EEechHHHHHhhhcCChHHHHHHHHHHc-CC---cCCHHHHHHH--
Confidence            35789999999999999999999987644     4566554433221000     0011110 00   0000000011  


Q ss_pred             HHHHHHhc-CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          80 DATKWLKN-DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        80 ~~~~~l~~-~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                       +.+.+.. .+..+|+|+...+..+.+.+.. +   .... .+|++.+|.+++.+|...|.
T Consensus        75 -~~~~l~~~~~~~~vid~~~~~~~~~~~l~~-~---~~~~-~vi~L~~~~~~~~~R~~~R~  129 (227)
T 1zd8_A           75 -ALHELKNLTQYSWLLDGFPRTLPQAEALDR-A---YQID-TVINLNVPFEVIKQRLTARW  129 (227)
T ss_dssp             -HHHHHHTCTTSCEEEESCCCSHHHHHHHHT-T---SCCC-EEEEEECCHHHHHHHHTCEE
T ss_pred             -HHHHHhcccCCCEEEeCCCCCHHHHHHHHH-h---cCCC-EEEEEECCHHHHHHHHHcCc
Confidence             1112221 2456889998776554433332 2   1222 56788899999999988764

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=99.33  E-value=1.3e-11  Score=87.20  Aligned_cols=120  Identities=19%  Similarity=0.271  Sum_probs=64.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh--hh-hh-------hcCCCC--ccccCc-hh-hhhHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR--KH-LE-------LYNSHD--IFRVDN-TE-GYNIRQL   72 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~--~~-~~-------~~~~~~--~~~~~~-~~-~~~~~~~   72 (143)
                      .+|+++|+|||||||+|+.|++.++..     +++.|.+..  .. +.       ...+.+  +++... .+ ... ...
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~   75 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILD-AES   75 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCC-HHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeecccccccc-HHH
Confidence            489999999999999999999998754     445554321  11 00       000111  111100 00 000 000


Q ss_pred             HHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhh----cCCEEEEEEeecCc-HHHHHHhhhhhc
Q psy2713          73 SAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARK----MGFKVLFVELIVQD-EEILEHNIKQSM  140 (143)
Q Consensus        73 ~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~----~~~~~~~v~~~~~~-~~~~~r~~~r~~  140 (143)
                      +... ...+++.+. .+..+|+++....     .+.. +++.    .++.+.++++.+|. +++.+|..+|..
T Consensus        76 f~~~-~~~~i~~~~-~g~~vIl~gg~~~-----~~~~-~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~  140 (253)
T 2ze6_A           76 AHRR-LIFEVDWRK-SEEGLILEGGSIS-----LLNC-MAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA  140 (253)
T ss_dssp             HHHH-HHHHHHTTT-TSSEEEEEECCHH-----HHHH-HHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHh-CCCCeEEeccHHH-----HHHH-HHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence            1111 122222223 3556666544331     2333 4444    56778889999998 999999988854

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=99.32  E-value=2.1e-12  Score=89.30  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=28.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      ++.+|+|+|+|||||||+|+.|++.++..++++
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~   36 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA   36 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence            457899999999999999999999998655543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.28  E-value=2.5e-11  Score=80.30  Aligned_cols=32  Identities=28%  Similarity=0.263  Sum_probs=26.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      .+|+++|+|||||||+++.|++.++...++.+
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d   33 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGS   33 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence            48999999999999999999999876544333

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=99.28  E-value=6.3e-12  Score=84.38  Aligned_cols=39  Identities=23%  Similarity=0.411  Sum_probs=31.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~   49 (143)
                      +.+|+|+|+|||||||+|+.|++.++..     +++.|.+.+..
T Consensus         2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~   40 (184)
T 2iyv_A            2 APKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQR   40 (184)
T ss_dssp             CCSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHH
Confidence            3469999999999999999999998754     55777765543

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=99.27  E-value=1.2e-11  Score=81.81  Aligned_cols=111  Identities=23%  Similarity=0.200  Sum_probs=59.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      +.|+++|+|||||||+|+.|++.++..     +++.|.+.....+.. ..+++...+...   ...    .-..+...+.
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~-~~~~~~~~~~~~---~~~----~~~~~l~~l~   67 (168)
T 2pt5_A            1 MRIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLS-IPQIFEKKGEAY---FRK----LEFEVLKDLS   67 (168)
T ss_dssp             CEEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSC-HHHHHHHSCHHH---HHH----HHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCC-HHHHHHHhChHH---HHH----HHHHHHHHHh
Confidence            369999999999999999999998754     456666554432100 001111111110   001    1112223333


Q ss_pred             cCCeEEEEeCC--chhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          87 NDGEVAIIDGT--TATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        87 ~~~~~vi~d~~--~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                      ..+..||.++.  ...++.++     .++.  . ..+|++.||.+++.+|...|
T Consensus        68 ~~~~~Vi~~g~~~~~~~~~~~-----~l~~--~-~~~i~l~~~~e~~~~R~~~r  113 (168)
T 2pt5_A           68 EKENVVISTGGGLGANEEALN-----FMKS--R-GTTVFIDIPFEVFLERCKDS  113 (168)
T ss_dssp             TSSSEEEECCHHHHTCHHHHH-----HHHT--T-SEEEEEECCHHHHHHHCBCT
T ss_pred             ccCCeEEECCCCEeCCHHHHH-----HHHc--C-CEEEEEECCHHHHHHHHhCC
Confidence            33444554332  23333332     2222  2 25677889999999998775

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=99.27  E-value=2.4e-11  Score=83.62  Aligned_cols=115  Identities=16%  Similarity=0.183  Sum_probs=64.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--CCC---ccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--SHD---IFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .|+|+|+|||||||+|+.|++.++.     ..++.|++.+.......  +..   ++...    ...........+.   
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~-----~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g----~~~~~~~~~~~i~---   69 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGI-----PQISTGDMLRAAVKSGSELGKQAKDIMDAG----KLVTDELVIALVK---   69 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCC-----CEEEHHHHHHHHHHHTCTTTGGGHHHHHHT----CCCCHHHHHHHHH---
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHHHHHHHHcCChHHHHHHHHHHCC----CcCCHHHHHHHHH---
Confidence            5899999999999999999999864     35677666554322110  000   00000    0000011111111   


Q ss_pred             HHHhc--CCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713          83 KWLKN--DGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        83 ~~l~~--~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..+..  .+..+|+|+......+...+.     +.+. +..++++.+|.+++++|...|.
T Consensus        70 ~~l~~~~~~~~~i~dg~~~~~~~~~~l~-----~~~~~~d~vi~l~~~~e~~~~R~~~R~  124 (214)
T 1e4v_A           70 ERIAQEDCRNGFLLDGFPRTIPQADAMK-----EAGINVDYVLEFDVPDELIVDRIVGRR  124 (214)
T ss_dssp             HHHTSGGGGGCEEEESCCCSHHHHHHHH-----HTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred             HHHhccccCCCEEEeCCCCCHHHHHHHH-----hcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence            22211  134688998765554333332     2232 3357888999999999988765

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=99.26  E-value=2.2e-11  Score=80.78  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=30.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .+|+++|+|||||||+|+.|++.++..     .++.|.+...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~   39 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQH   39 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHH
Confidence            579999999999999999999998754     4566666544

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=99.26  E-value=6.3e-11  Score=83.50  Aligned_cols=44  Identities=20%  Similarity=0.378  Sum_probs=35.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC-----CCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-----DHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-----~~~~~~~~~d~~~~   47 (143)
                      .++.+|.++|+|||||||+|+.|++.++..     +.++.+++.|++.+
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~   68 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR   68 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence            457899999999999999999999998765     33455778887754

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=99.26  E-value=1e-10  Score=78.70  Aligned_cols=26  Identities=38%  Similarity=0.613  Sum_probs=23.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ++|+++|+|||||||+|+.|++.+..
T Consensus         1 ~~I~l~G~~GsGKsT~~~~L~~~l~~   26 (195)
T 2pbr_A            1 MLIAFEGIDGSGKTTQAKKLYEYLKQ   26 (195)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            37999999999999999999999843

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=99.26  E-value=9.7e-11  Score=81.65  Aligned_cols=126  Identities=21%  Similarity=0.187  Sum_probs=67.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh---hhhhhhhhc-CCCCccccCchhhhhHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA---YRRKHLELY-NSHDIFRVDNTEGYNIRQLSAREAQED   80 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
                      +..+|++.|+|||||||+++.|++.+.. +.+........   .... +... ...+.+.   .....  ..........
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~-i~~~~~~~~~~~---~~~~~--ll~~a~r~~~   97 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEE-IRKIVLEGNDMD---IRTEA--MLFAASRREH   97 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHH-HHHHTTC---CC---HHHHH--HHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHH-HHHHHhCCCCCC---HHHHH--HHHHHHHHHH
Confidence            5679999999999999999999999987 65443221110   0000 0000 0001011   11100  0000011111


Q ss_pred             ----HHHHHhcCCeEEEEe----------CC--chhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          81 ----ATKWLKNDGEVAIID----------GT--TATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        81 ----~~~~l~~~~~~vi~d----------~~--~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                          +...+. .|..||+|          +.  .......+++.. .......+..++.+.+|.+++.+|..+|.
T Consensus        98 ~~~~i~~~l~-~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~R~  170 (229)
T 4eaq_A           98 LVLKVIPALK-EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNE-FAINGLYPDLTIYLNVSAEVGRERIIKNS  170 (229)
T ss_dssp             CCCCCHHHHH-TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHHHHC-
T ss_pred             HHHHHHHHHH-CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence                111222 47799999          54  334444445555 54444455677888999999999988874

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=99.23  E-value=8.1e-10  Score=76.21  Aligned_cols=130  Identities=16%  Similarity=0.074  Sum_probs=70.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh---h---hhhhhhhcCCCCccccCchhhhhHHHHHH--H
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA---Y---RRKHLELYNSHDIFRVDNTEGYNIRQLSA--R   75 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~   75 (143)
                      |+..+|+|.|++||||||+++.|++++...++++.......   +   .+..+... ...-++   .....+. ..+  .
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~-~~~~~~---~~~~~ll-f~a~R~   78 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAP-SDEPMA---ADTELLL-MFAARA   78 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSC-CSSCCC---HHHHHHH-HHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcC-CCCCCC---HHHHHHH-HHHHHH
Confidence            66789999999999999999999999988888775543221   1   11111110 000011   1111100 011  1


Q ss_pred             HHHHHHHHHHhcCCeEEEEeCCchh------------HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          76 EAQEDATKWLKNDGEVAIIDGTTAT------------MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        76 ~~~~~~~~~l~~~~~~vi~d~~~~~------------~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +.+.+.+......|..||.|=....            .+.-..+.. .+.....+.++|++.+|.+++++|..+|.
T Consensus        79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~-~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~  153 (213)
T 4edh_A           79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES-FVQGDLRPDLTLVFDLPVEIGLARAAARG  153 (213)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred             HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            1122222222234789999853221            111112222 22223456678889999999999988774

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=99.23  E-value=9.5e-10  Score=73.99  Aligned_cols=120  Identities=12%  Similarity=0.073  Sum_probs=66.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      ..+++++|+|||||||+++.|+..+.  +  ...++.|++.....     ..++... . ... ........+.......
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~--g--~~~i~~d~~~~~~~-----~~~~~~~-~-~~~-~~~~~~~~l~~~~~~~   69 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLD--N--SAYIEGDIINHMVV-----GGYRPPW-E-SDE-LLALTWKNITDLTVNF   69 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSS--S--EEEEEHHHHHTTCC-----TTCCCGG-G-CHH-HHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccC--C--eEEEcccchhhhhc-----cccccCc-c-chh-HHHHHHHHHHHHHHHH
Confidence            46899999999999999999987432  1  13455565543210     1111110 0 000 0001111122222222


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHh--hcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFAR--KMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ...+..+|+|... ....++.+.+ +++  ..+..+.++.+.++.+++.+|...|.
T Consensus        70 ~~~~~~~ild~~~-~~~~~~~~~~-~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~  123 (189)
T 2bdt_A           70 LLAQNDVVLDYIA-FPDEAEALAQ-TVQAKVDDVEIRFIILWTNREELLRRDALRK  123 (189)
T ss_dssp             HHTTCEEEEESCC-CHHHHHHHHH-HHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred             HhcCCcEEEeecc-CHHHHHHHHH-HHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence            2235678899864 3445566666 654  22346667788899999999987664

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=99.22  E-value=1.2e-11  Score=83.35  Aligned_cols=113  Identities=15%  Similarity=0.179  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHH-HccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhH---HHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRY-LTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNI---RQLSAREA   77 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~-l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   77 (143)
                      ..+++..|+++|+|||||||+++.|++. ++.     ..++.|++.+....    .+.+...... ..+   ..   ...
T Consensus         6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~-----~~id~d~~~~~~~~----~~~~~~~~~~-~~~~r~~~---~~~   72 (184)
T 1y63_A            6 EQPKGINILITGTPGTGKTSMAEMIAAELDGF-----QHLEVGKLVKENHF----YTEYDTELDT-HIIEEKDE---DRL   72 (184)
T ss_dssp             CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTE-----EEEEHHHHHHHTTC----SCC------C-CCCCHHHH---HHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-----EEeeHHHHHHHhhh----hhhHHHHhhh-cccCCCCH---HHH
Confidence            4556789999999999999999999998 554     45566665444200    0111100000 000   01   011


Q ss_pred             HHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          78 QEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        78 ~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +..+...+...+ .+|+|..+..          .+++.... .+|++.||.+++.+|...|.
T Consensus        73 ~~~l~~~~~~~g-~~vi~~~~~~----------~~~~~~~~-~vi~l~~~~e~~~~Rl~~R~  122 (184)
T 1y63_A           73 LDFMEPIMVSRG-NHVVDYHSSE----------LFPERWFH-MVVVLHTSTEVLFERLTKRQ  122 (184)
T ss_dssp             HHHHHHHHTSSS-EEEEECSCCT----------TSCGGGCS-EEEEEECCHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccC-CEEEeCchHh----------hhhhccCC-EEEEEECCHHHHHHHHHhCC
Confidence            222223332333 4566755321          22221122 46778899999999988874

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=99.22  E-value=1.4e-10  Score=78.81  Aligned_cols=116  Identities=14%  Similarity=0.206  Sum_probs=63.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh-------cCCCCccccC-------------chh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL-------YNSHDIFRVD-------------NTE   65 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-------~~~~~~~~~~-------------~~~   65 (143)
                      -++|.++|.+||||||+|+.|++.++.     .+++.|.+.+.....       ..+.++++..             +.+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~-----~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~   86 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGA-----HVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRE   86 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCC-----EEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHH
Confidence            478999999999999999999998764     455666664443221       1122323200             011


Q ss_pred             hhhHHHHHHHHHH-HHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          66 GYNIRQLSAREAQ-EDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        66 ~~~~~~~~~~~~~-~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      .....+.+....+ ..+...+...+..+|+|.+......   |.. .     +. .+|.+.||.++.++|.+
T Consensus        87 ~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~~---~~~-~-----~d-~vi~v~a~~e~r~~Rli  148 (192)
T 2grj_A           87 NLKKLELLVHPLMKKRVQEIINKTSGLIVIEAALLKRMG---LDQ-L-----CD-HVITVVASRETILKRNR  148 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTTT---GGG-G-----CS-EEEEEECCHHHHHHHCS
T ss_pred             HHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEEeceeecC---hHH-h-----CC-EEEEEECCHHHHHHHHH
Confidence            0011111111111 1122223333668999988665431   333 2     22 34677899999988863

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=99.22  E-value=4e-12  Score=85.11  Aligned_cols=108  Identities=16%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhh-hhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHL-ELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      ++.+|+++|+|||||||+++.|++.++..     .++.|++..... ....+..++.....+         ...+..+..
T Consensus        10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~   75 (180)
T 3iij_A           10 LLPNILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREEQLYDGYDEEYDCPILDE---------DRVVDELDN   75 (180)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTCEEEEETTTTEEEECH---------HHHHHHHHH
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHhCCe-----EEEHHHHHhhcchhhhhhhhhcCccCCh---------HHHHHHHHH
Confidence            45689999999999999999999998643     456666544321 000011111110000         011222222


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+..++  +|+|..+..          .+.. .....+|++.||.+++.+|...|.
T Consensus        76 ~~~~g~--~vv~~~~~~----------~~~~-~~~~~vi~L~~~~e~l~~R~~~r~  118 (180)
T 3iij_A           76 QMREGG--VIVDYHGCD----------FFPE-RWFHIVFVLRTDTNVLYERLETRG  118 (180)
T ss_dssp             HHHHCC--EEEECSCCT----------TSCG-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred             HHhcCC--EEEEechhh----------hcch-hcCCEEEEEECCHHHHHHHHHHcC
Confidence            333433  344544321          1111 122356778899999999998885

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.21  E-value=7.4e-10  Score=73.73  Aligned_cols=115  Identities=17%  Similarity=0.179  Sum_probs=74.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      +..++.++|++||||||+++.+.       .....++.|.++..... ..+...+          .... ...+......
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~-------~~~~~~~~d~~~g~~~~-~~~~~~~----------~~~~-~~~~~~~~~~   68 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHF-------KPTEVISSDFCRGLMSD-DENDQTV----------TGAA-FDVLHYIVSK   68 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHS-------CGGGEEEHHHHHHHHCS-STTCGGG----------HHHH-HHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHc-------cCCeEEccHHHHHHhcC-cccchhh----------HHHH-HHHHHHHHHH
Confidence            45799999999999999999853       12345666655433211 1011111          0000 0111111122


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ....+..+++|.++.....+.++.. +++.......++.+..|...+..++.+|.
T Consensus        69 ~~~~g~~~~~~~~~~~s~g~~qrv~-iAral~~~p~~lllDEPt~~Ld~~~~~R~  122 (171)
T 4gp7_A           69 RLQLGKLTVVDATNVQESARKPLIE-MAKDYHCFPVAVVFNLPEKVCQERNKNRT  122 (171)
T ss_dssp             HHHTTCCEEEESCCCSHHHHHHHHH-HHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred             HHhCCCeEEEECCCCCHHHHHHHHH-HHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence            2234678899999988888888888 99999888888889999999999977553

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=99.20  E-value=9.5e-10  Score=77.00  Aligned_cols=134  Identities=12%  Similarity=0.009  Sum_probs=65.6

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCC-ceeEehh---hhh---hhhhhhcCCCCccccCchhhhhHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHK-SKVFSVS---AYR---RKHLELYNSHDIFRVDNTEGYNIRQLSAR   75 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~-~~~~~~d---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   75 (143)
                      +|++.+|++.|++||||||+++.|++++...+++ +......   .+.   +..........-+++  .....+...--.
T Consensus        24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~--~~e~lLf~A~R~  101 (236)
T 3lv8_A           24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQD--ITELLLVYAARV  101 (236)
T ss_dssp             --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCH--HHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCH--HHHHHHHHHHHH
Confidence            4667899999999999999999999999888887 4444221   111   111100000010110  000100000001


Q ss_pred             HHHHHHHHHHhcCCeEEEEeCCch------------hHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          76 EAQEDATKWLKNDGEVAIIDGTTA------------TMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        76 ~~~~~~~~~l~~~~~~vi~d~~~~------------~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +.+...+......|..||.|=...            ..+....+.. .+.....+-+++.+.+|.+++++|..+|.
T Consensus       102 ~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~-~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~  176 (236)
T 3lv8_A          102 QLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQ-TALGDFKPDLTLYLDIDPKLGLERARGRG  176 (236)
T ss_dssp             HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred             HHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            122222222223478999984321            1111112222 22222355678888999999999988775

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=99.18  E-value=2.2e-09  Score=74.00  Aligned_cols=134  Identities=14%  Similarity=0.004  Sum_probs=69.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCC-CceeEehhh---h---hhhhhhhcCC--CCccccCchhhhhHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDH-KSKVFSVSA---Y---RRKHLELYNS--HDIFRVDNTEGYNIRQLSA   74 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~-~~~~~~~d~---~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   74 (143)
                      |+..+|+|.|++||||||+++.|++++...++ .........   +   .+.......+  ..-+++  .....+....-
T Consensus         1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~--~~e~lL~~A~R   78 (213)
T 4tmk_A            1 MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITD--KAEVLMFYAAR   78 (213)
T ss_dssp             -CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCH--HHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCCh--HHHHHHHHHHH
Confidence            45689999999999999999999999988777 443332211   1   1111110000  000111  11111110000


Q ss_pred             HHHHHHHHHHHhcCCeEEEEeCCchhHHH---------HHHHHH--HHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          75 REAQEDATKWLKNDGEVAIIDGTTATMEK---------RKQIHD--YFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        75 ~~~~~~~~~~l~~~~~~vi~d~~~~~~~~---------r~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .+.+...+......|..||.|=....--.         .+++..  ..+.....+-++|.+.+|.+++++|..+|.
T Consensus        79 ~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~  154 (213)
T 4tmk_A           79 VQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG  154 (213)
T ss_dssp             HHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence            12223323222234789999853321110         112211  022222356678889999999999988874

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=99.17  E-value=1.4e-10  Score=79.15  Aligned_cols=27  Identities=19%  Similarity=0.182  Sum_probs=24.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++.+|+|+|+|||||||+++.|++.++
T Consensus        11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           11 RIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            467999999999999999999999874

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=99.14  E-value=5.2e-10  Score=75.78  Aligned_cols=26  Identities=23%  Similarity=0.528  Sum_probs=23.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ++|++.|+|||||||+++.|++.++.
T Consensus         1 ~~I~i~G~~GsGKsT~~~~L~~~l~~   26 (205)
T 2jaq_A            1 MKIAIFGTVGAGKSTISAEISKKLGY   26 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCccCHHHHHHHHHHhcCC
Confidence            37999999999999999999999875

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=99.12  E-value=7.1e-11  Score=78.69  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=29.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .|+++|+|||||||+|+.|++.++..     .++.|.+.+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~~~-----~~d~d~~~~~   41 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLDLV-----FLDSDFLIEQ   41 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcccHHHHH
Confidence            69999999999999999999998754     4566665544

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=99.11  E-value=1.3e-10  Score=83.29  Aligned_cols=38  Identities=21%  Similarity=0.307  Sum_probs=29.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ..+.+|+++|+|||||||+|+.|+ .++.     .+++.|.+.+
T Consensus        73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~-----~~id~D~~~~  110 (281)
T 2f6r_A           73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA-----YIIDSDHLGH  110 (281)
T ss_dssp             TTCEEEEEEECTTSCHHHHHHHHH-HHTC-----EEEEHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHH-HCCC-----cEEehhHHHH
Confidence            346899999999999999999999 4553     4566666533

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=99.11  E-value=5.3e-10  Score=86.88  Aligned_cols=119  Identities=14%  Similarity=0.131  Sum_probs=64.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC-CCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD-HKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      +..+|+|+|++||||||+++.|+..+...+ .....+..|+++.....   ... |+.  .+.....+.     +..+.+
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~---~l~-f~~--~~r~~~~r~-----i~~v~q  436 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS---ELG-FSK--AHRDVNVRR-----IGFVAS  436 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS---SCC-CSH--HHHHHHHHH-----HHHHHH
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc---ccC-CCH--HHHHHHHHH-----HHHHHH
Confidence            457899999999999999999999986432 23344666665443111   111 221  111111111     222222


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI  136 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~  136 (143)
                      .+...+..++..........++...+ +++..+ .++.|++.+|.+++.+|..
T Consensus       437 ~l~~~~~ivi~~~~~~~~~~r~~~r~-lL~~~g-~f~~V~L~~~~e~~~~R~~  487 (552)
T 3cr8_A          437 EITKNRGIAICAPIAPYRQTRRDVRA-MIEAVG-GFVEIHVATPIETCESRDR  487 (552)
T ss_dssp             HHHHTTCEEEECCCCCCHHHHHHHHH-HHHTTS-EEEEEEECC----------
T ss_pred             HHHhcCCEEEEecCCccHHHHHHHHH-HHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence            33334666776655444566777777 887766 7788999999999998854

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=99.06  E-value=1.9e-09  Score=75.03  Aligned_cols=126  Identities=15%  Similarity=0.018  Sum_probs=64.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC----CCCceeEehhh---h---hhhhhhhcCCCCccccCchhhhhHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT----DHKSKVFSVSA---Y---RRKHLELYNSHDIFRVDNTEGYNIRQLSA   74 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~----~~~~~~~~~d~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   74 (143)
                      +..+|+|.|++||||||+++.|++++...    ++++.......   .   .+.....  + + ++   ..... ....+
T Consensus        24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~--~-~-~~---~~~~~-llf~a   95 (227)
T 3v9p_A           24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLN--Q-P-MD---LETEA-LLMFA   95 (227)
T ss_dssp             CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHH--S-C-CC---HHHHH-HHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHc--C-C-CC---HHHHH-HHHHH
Confidence            45799999999999999999999999776    66654443221   1   1111110  0 1 11   11100 00001


Q ss_pred             --HHHHHHHHHHHhcCCeEEEEeCCchh------------HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          75 --REAQEDATKWLKNDGEVAIIDGTTAT------------MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        75 --~~~~~~~~~~l~~~~~~vi~d~~~~~------------~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                        .+.+...+......|..||.|-....            .+.-..+.. .+.....+-++|.+.+|.+++.+|..+|.
T Consensus        96 ~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~-~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~  173 (227)
T 3v9p_A           96 GRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALER-WVQGGFQPDLTVLFDVPPQIASARRGAVR  173 (227)
T ss_dssp             HHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHH-HHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred             HHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence              11122222222234789999854322            111111222 22223456678889999999999987764

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=99.05  E-value=4.7e-10  Score=76.01  Aligned_cols=37  Identities=22%  Similarity=0.460  Sum_probs=29.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      +++.+|.++|++||||||+++.|++. +..     +++.|++.
T Consensus         6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~-----~id~d~~~   42 (203)
T 1uf9_A            6 KHPIIIGITGNIGSGKSTVAALLRSW-GYP-----VLDLDALA   42 (203)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHHHHT-TCC-----EEEHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHC-CCE-----EEcccHHH
Confidence            45789999999999999999999987 543     45666543

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=99.04  E-value=6.1e-10  Score=73.77  Aligned_cols=38  Identities=18%  Similarity=0.278  Sum_probs=30.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ++.+|+++|+|||||||+++.|+..++.     ..++.|.+..
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~-----~~id~d~~~~   40 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIE   40 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTC-----EEEEHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEeccHHHH
Confidence            3568999999999999999999998764     3456665543

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=99.04  E-value=1.2e-09  Score=74.10  Aligned_cols=26  Identities=19%  Similarity=0.319  Sum_probs=24.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ++.+|+|+|+|||||||+++.|++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46799999999999999999999987

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=99.04  E-value=1e-09  Score=75.53  Aligned_cols=119  Identities=9%  Similarity=0.069  Sum_probs=68.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh----------hcCCCCccccCc-hhhhhHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE----------LYNSHDIFRVDN-TEGYNIRQLS   73 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~   73 (143)
                      ..+.|.++|.+||||||+++.|++ ++..     +++.|.+-+....          ...+.++++.++ -+...+...+
T Consensus         8 ~~~~iglTGgigsGKStv~~~l~~-~g~~-----vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~v   81 (210)
T 4i1u_A            8 HMYAIGLTGGIGSGKTTVADLFAA-RGAS-----LVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALI   81 (210)
T ss_dssp             SCCEEEEECCTTSCHHHHHHHHHH-TTCE-----EEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHH-CCCc-----EEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHH
Confidence            357899999999999999999988 6654     4455544333221          112444554332 1222222211


Q ss_pred             -------------HHH-HHHHHHHHH-hcCCeEEEEeCCchhH-HHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713          74 -------------ARE-AQEDATKWL-KNDGEVAIIDGTTATM-EKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK  137 (143)
Q Consensus        74 -------------~~~-~~~~~~~~l-~~~~~~vi~d~~~~~~-~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~  137 (143)
                                   .-- ....+.+.+ ......+|+|.+.... ..   +.. .+     + .++.+.||.++.++|-++
T Consensus        82 F~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~---~~~-~~-----D-~vi~V~ap~e~r~~Rl~~  151 (210)
T 4i1u_A           82 FSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRN---WKA-RC-----D-RVLVVDCPVDTQIARVMQ  151 (210)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHH---HHH-HC-----S-EEEEEECCHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCC---ccc-cC-----C-eEEEEECCHHHHHHHHHh
Confidence                         111 112233333 2234578999987765 32   333 32     2 246678999999999888


Q ss_pred             hh
Q psy2713         138 QS  139 (143)
Q Consensus       138 r~  139 (143)
                      |.
T Consensus       152 Rd  153 (210)
T 4i1u_A          152 RN  153 (210)
T ss_dssp             HH
T ss_pred             cC
Confidence            84

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=99.04  E-value=4.1e-09  Score=77.16  Aligned_cols=35  Identities=20%  Similarity=0.315  Sum_probs=29.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +.+|+|+|++||||||||..|++.++     ..+++.|.+
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~   74 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKM   74 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHCC-----CcEEccccc
Confidence            46999999999999999999999875     456666654

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=99.03  E-value=4.4e-10  Score=74.28  Aligned_cols=38  Identities=21%  Similarity=0.258  Sum_probs=30.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ..+|+++|+|||||||+|+.|+++++...     ++.|.+...
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~-----id~D~~~~~   44 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLALKLEV-----LDTDMIISE   44 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHHTCCE-----EEHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCCE-----EEChHHHHH
Confidence            46899999999999999999999998654     455655444

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=99.02  E-value=2.4e-08  Score=68.39  Aligned_cols=126  Identities=21%  Similarity=0.164  Sum_probs=64.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh------hhhhhhhhcCCCCccccCchhhhhHHHHHH--HHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA------YRRKHLELYNSHDIFRVDNTEGYNIRQLSA--REA   77 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~   77 (143)
                      .++|++-|+.||||||+++.|+++|.. ++++.......      ..+.....  +.+ ++   .....+ -..+  .+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~~eP~~t~~g~~ir~~l~~--~~~-~~---~~~~~l-Lf~a~R~~~   73 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIVLE--GND-MD---IRTEAM-LFAASRREH   73 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEESSTTCHHHHHHHHHHHS--SCC-CC---HHHHHH-HHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEeeCCCCChHHHHHHHHHhc--ccC-CC---HHHHHH-HHHHHHHHH
Confidence            468999999999999999999999953 55544432211      11111111  111 11   111100 0001  111


Q ss_pred             HHHHHHHHhcCCeEEEEeCCchh------------HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          78 QEDATKWLKNDGEVAIIDGTTAT------------MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        78 ~~~~~~~l~~~~~~vi~d~~~~~------------~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +...+......|..||.|=....            .+.-..+.. .+...-.|-+++.+.+|.+++++|..+|..
T Consensus        74 ~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~-~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~  147 (205)
T 4hlc_A           74 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNE-FAINGLYPDLTIYLNVSAEVGRERIIKNSR  147 (205)
T ss_dssp             HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred             HHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHH-HHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence            22222222234788998854321            111112222 222223456788889999999999877753

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=99.00  E-value=9.1e-10  Score=75.05  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=27.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +.+|.++|+|||||||+++.|+. ++.     .+++.|.+.+
T Consensus         2 ~~~i~l~G~~GsGKST~~~~La~-lg~-----~~id~d~~~~   37 (206)
T 1jjv_A            2 TYIVGLTGGIGSGKTTIANLFTD-LGV-----PLVDADVVAR   37 (206)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHT-TTC-----CEEEHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH-CCC-----cccchHHHHH
Confidence            46899999999999999999987 543     3456665543

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.99  E-value=1.5e-09  Score=76.59  Aligned_cols=38  Identities=26%  Similarity=0.371  Sum_probs=30.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ...|+++|+|||||||+++.|++.+++.+     +..|.+.+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~-----~d~d~~~~~   85 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF-----FDCDTLIEQ   85 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEE-----EEHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcE-----EeCcHHHHH
Confidence            46899999999999999999999987644     455555443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=98.98  E-value=1.4e-09  Score=74.82  Aligned_cols=37  Identities=27%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ++.+|+++|++||||||+++.|++ ++.     .+++.|.+.+
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~-----~~id~D~~~~   39 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD-LGI-----NVIDADIIAR   39 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH-TTC-----EEEEHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH-cCC-----EEEEccHHHH
Confidence            468999999999999999999987 543     4556665433

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=98.97  E-value=2.4e-10  Score=78.14  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=28.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ++|+|.|++||||||+++.|++.+...++++..+
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~   34 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence            3799999999999999999999987655544433

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.95  E-value=1.5e-10  Score=78.95  Aligned_cols=43  Identities=33%  Similarity=0.341  Sum_probs=34.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .++.+|.++|++||||||+++.|+..+...+.++..++.|.+.
T Consensus        20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~   62 (201)
T 1rz3_A           20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI   62 (201)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence            4568999999999999999999999886556656666666553

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=98.95  E-value=1.3e-08  Score=69.33  Aligned_cols=35  Identities=20%  Similarity=0.358  Sum_probs=30.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      ++|++-|+.||||||.++.|+++|...++++....
T Consensus         1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            47899999999999999999999988888776553

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.94  E-value=5.6e-09  Score=71.18  Aligned_cols=38  Identities=26%  Similarity=0.490  Sum_probs=30.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      ++.+|.++|+|||||||+++.|++.+.    ...++..|++.
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~   57 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFF   57 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccc
Confidence            457899999999999999999987652    34566777653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.94  E-value=5.9e-10  Score=75.84  Aligned_cols=36  Identities=19%  Similarity=0.248  Sum_probs=28.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .+|.++|++||||||+++.|++ ++     ..++..|++.+.
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~~~~   37 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKLIHS   37 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHHHHG
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHHHHH
Confidence            4799999999999999999998 65     345666665443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.92  E-value=9.4e-09  Score=69.02  Aligned_cols=119  Identities=13%  Similarity=0.176  Sum_probs=61.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL   85 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (143)
                      ..+|+++|+|||||||+++.|+..+.   .....++.|++...... .....++. ....    ........+.......
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~~~---~g~i~i~~d~~~~~~~~-~~~~~~~~-~~~~----~~~~v~~~l~~~~~~~   79 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANLPG---VPKVHFHSDDLWGYIKH-GRIDPWLP-QSHQ----QNRMIMQIAADVAGRY   79 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSS---SCEEEECTTHHHHTCCS-SCCCTTSS-SHHH----HHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhccC---CCeEEEcccchhhhhhc-ccccCCcc-chhh----hhHHHHHHHHHHHHHH
Confidence            57999999999999999999987632   11224455554332110 00112211 1101    0111111111111112


Q ss_pred             hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ...+..+++|..... ...+.+..     .+..+..+.+.++.++++.|-..|.
T Consensus        80 ~~~~~~~~~~~~~~~-~~l~~~~~-----~~~~~~~ls~~~~~~v~~~R~~~r~  127 (191)
T 1zp6_A           80 AKEGYFVILDGVVRP-DWLPAFTA-----LARPLHYIVLRTTAAEAIERCLDRG  127 (191)
T ss_dssp             HHTSCEEEECSCCCT-TTTHHHHT-----TCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred             hccCCeEEEeccCcH-HHHHHHHh-----cCCCeEEEEecCCHHHHHHHHHhcC
Confidence            234556788875432 12222221     1344556788899999999988773

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.92  E-value=9.6e-09  Score=71.94  Aligned_cols=31  Identities=16%  Similarity=0.371  Sum_probs=27.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      ++.+|+++|+|||||||+++.|+++++...+
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~   56 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL   56 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence            3679999999999999999999999876544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.91  E-value=2.6e-08  Score=75.39  Aligned_cols=45  Identities=29%  Similarity=0.474  Sum_probs=40.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~   49 (143)
                      +|.+|+++|++||||||++..|+.++...+.++.++..|.++...
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa  143 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGA  143 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH
Confidence            578999999999999999999999998889999999999887653

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=98.90  E-value=8e-09  Score=75.32  Aligned_cols=43  Identities=19%  Similarity=0.346  Sum_probs=34.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~   46 (143)
                      .+|.+|.++|++||||||+++.|+..+..  .+..+.+++.|.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~  134 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL  134 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence            45789999999999999999999988863  23456778888763

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.88  E-value=1.2e-08  Score=74.32  Aligned_cols=36  Identities=36%  Similarity=0.422  Sum_probs=29.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      ++.+|+++|++||||||+|..|++.++.     .+++.|.+
T Consensus         4 m~~~i~i~GptGsGKTtla~~La~~l~~-----~iis~Ds~   39 (323)
T 3crm_A            4 LPPAIFLMGPTAAGKTDLAMALADALPC-----ELISVDSA   39 (323)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSCE-----EEEEECTT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcCC-----cEEeccch
Confidence            3569999999999999999999999764     45555543

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.88  E-value=1.6e-08  Score=69.07  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=29.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK   38 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~   38 (143)
                      |+..+|.+.|++||||||+|+.|+++|+..+++.+
T Consensus         4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D~~   38 (201)
T 3fdi_A            4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYSKE   38 (201)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHTTCCEECHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEECHH
Confidence            55679999999999999999999999988766533

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.85  E-value=2.8e-08  Score=68.95  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=31.9

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHcc-CCCCcee
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKV   39 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~   39 (143)
                      .++++.+|++.|++||||||+++.|++++.. .++++..
T Consensus        17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~   55 (223)
T 3ld9_A           17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV   55 (223)
T ss_dssp             --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence            3456789999999999999999999999987 7776665

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.83  E-value=8.3e-09  Score=70.65  Aligned_cols=27  Identities=19%  Similarity=0.246  Sum_probs=24.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++.+|+++|++||||||+++.|+..+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            357999999999999999999998864

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=98.83  E-value=6.3e-08  Score=67.16  Aligned_cols=36  Identities=14%  Similarity=0.208  Sum_probs=30.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ++.+|.+.|++||||||+|+.|++.++...++.+++
T Consensus        13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~   48 (223)
T 3hdt_A           13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDIL   48 (223)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHH
Confidence            457999999999999999999999998776655443

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.81  E-value=5.2e-08  Score=73.67  Aligned_cols=45  Identities=29%  Similarity=0.466  Sum_probs=39.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~   49 (143)
                      +|.+|+++|++||||||++..|+..+...+.++.++..|.++...
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a  140 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAA  140 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhH
Confidence            578999999999999999999999998888889899888776653

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.80  E-value=7.4e-08  Score=65.21  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=23.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..++.++|++||||||+++.|+..++
T Consensus         6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            6 KANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            457999999999999999999998753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=98.75  E-value=4.6e-08  Score=70.97  Aligned_cols=37  Identities=32%  Similarity=0.375  Sum_probs=30.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      |++.+|+++||+||||||+|..|++.++     ..+++.|.+
T Consensus         1 m~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~   37 (322)
T 3exa_A            1 MKEKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDSM   37 (322)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCGG
T ss_pred             CCCcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCcc
Confidence            5678999999999999999999999865     456677754

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=98.72  E-value=4.2e-08  Score=71.92  Aligned_cols=35  Identities=26%  Similarity=0.514  Sum_probs=30.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +.+|+++|++||||||+|..|++.++     ..+++.|.+
T Consensus         7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~   41 (340)
T 3d3q_A            7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM   41 (340)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred             CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence            46999999999999999999999976     456777765

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=98.72  E-value=6.3e-09  Score=74.89  Aligned_cols=43  Identities=14%  Similarity=0.316  Sum_probs=33.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ++.+|.++|++||||||+|+.|++.++..+.++.+++.|++.+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r   46 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR   46 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence            4678999999999999999999998876667778888888764

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=98.71  E-value=8.1e-08  Score=69.61  Aligned_cols=45  Identities=22%  Similarity=0.372  Sum_probs=37.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .++.+|+++|++||||||++..|+..+...+.++.++..|.++..
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~  146 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA  146 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH
Confidence            356899999999999999999999988766777778877766543

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=98.70  E-value=1.2e-07  Score=64.00  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .|+++||||||||||++.|.+.+.
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~   26 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCC
Confidence            589999999999999999987753

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.68  E-value=2.1e-07  Score=62.00  Aligned_cols=43  Identities=21%  Similarity=0.164  Sum_probs=33.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~   47 (143)
                      +...++++|+|||||||+++.++..+. ..+.....++..++..
T Consensus        37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~   80 (180)
T 3ec2_A           37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF   80 (180)
T ss_dssp             GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence            356899999999999999999998874 4566666666665543

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.68  E-value=1.2e-07  Score=68.67  Aligned_cols=35  Identities=37%  Similarity=0.526  Sum_probs=29.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +|.+|+++||+||||||+|..|++.++     ..+++.|.
T Consensus         9 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds   43 (316)
T 3foz_A            9 LPKAIFLMGPTASGKTALAIELRKILP-----VELISVDS   43 (316)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred             CCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence            467999999999999999999999965     45667665

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.67  E-value=9.5e-09  Score=69.76  Aligned_cols=35  Identities=26%  Similarity=0.332  Sum_probs=28.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +|.++|++||||||+|+.|++.++...     ++.|.+.+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg~~~-----~d~d~~~~   38 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALGVPY-----LSSGLLYR   38 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCCE-----EEHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcCCce-----eccchHHH
Confidence            899999999999999999999987544     45555443

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.66  E-value=7.8e-09  Score=72.17  Aligned_cols=39  Identities=31%  Similarity=0.342  Sum_probs=30.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ++|.+|++.|+|||||||+++.|++.++..     .++.|.+.+
T Consensus         7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~-----~~d~g~~~r   45 (233)
T 3r20_A            7 SGSLVVAVDGPAGTGKSSVSRGLARALGAR-----YLDTGAMYR   45 (233)
T ss_dssp             --CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCCcHHH
Confidence            356799999999999999999999998754     345555433

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.65  E-value=9.6e-09  Score=70.77  Aligned_cols=37  Identities=24%  Similarity=0.411  Sum_probs=29.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +.+|.++|+|||||||+++.|++.++...     ++.|++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~-----~d~g~i~~   41 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHL-----LDSGAIYR   41 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCc-----ccCcceee
Confidence            46899999999999999999999887543     45555443

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=98.65  E-value=3e-07  Score=70.74  Aligned_cols=45  Identities=27%  Similarity=0.380  Sum_probs=37.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .++.+|+++|+|||||||++..|+..+...+.++.+++.|.++..
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~a  143 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAG  143 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchh
Confidence            356799999999999999999999999877888999988876554

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=98.59  E-value=1.2e-08  Score=70.10  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=30.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      |+|.+|+++|++||||||+++.|++.++..     .++.|.+.+
T Consensus         1 m~~~~i~i~G~~gsGkst~~~~l~~~~g~~-----~~~~d~~~~   39 (219)
T 2h92_A            1 MKAINIALDGPAAAGKSTIAKRVASELSMI-----YVDTGAMYR   39 (219)
T ss_dssp             --CCCEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhcCCc-----eecCChHHH
Confidence            457899999999999999999999988754     455555533

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.58  E-value=4.9e-07  Score=65.86  Aligned_cols=44  Identities=23%  Similarity=0.288  Sum_probs=37.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      .++.+|+++|++||||||++..|+..+...+.++.++..|.++.
T Consensus       103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~  146 (320)
T 1zu4_A          103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA  146 (320)
T ss_dssp             TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence            35689999999999999999999998877778888887776544

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.57  E-value=7.9e-08  Score=65.65  Aligned_cols=42  Identities=26%  Similarity=0.392  Sum_probs=33.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .++.+|.++|++||||||+++.|+..+...|.+...+..|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            346799999999999999999999888643445666776654

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=98.57  E-value=2.4e-07  Score=70.11  Aligned_cols=45  Identities=36%  Similarity=0.485  Sum_probs=39.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSAYRRK   48 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~~~~~   48 (143)
                      .+|.+|+++|++||||||++..|+..+... +.++.++..|.++..
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~  143 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA  143 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence            357899999999999999999999999887 999999999876554

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.57  E-value=3.1e-07  Score=66.27  Aligned_cols=43  Identities=23%  Similarity=0.262  Sum_probs=36.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~   47 (143)
                      ++.+|+++|++||||||++..|+..+. ..|.++.++..|.++.
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~  147 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI  147 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence            467999999999999999999998886 3688888888876543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=98.54  E-value=3.4e-07  Score=68.51  Aligned_cols=34  Identities=21%  Similarity=0.344  Sum_probs=28.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +.+|+++|++||||||+|..|++.++.     .+++.|.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~-----~iis~Ds   35 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNG-----EVINSDS   35 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTE-----EEEECCT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCC-----eEeecCc
Confidence            468999999999999999999999863     4567665

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.52  E-value=3.2e-08  Score=69.70  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=26.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      ..+|.++|++||||||+++.|++.|+...++
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d   57 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLNWRLLD   57 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence            4689999999999999999999998765443

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=98.52  E-value=6.8e-08  Score=69.52  Aligned_cols=43  Identities=21%  Similarity=0.267  Sum_probs=33.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCC--CCceeE-ehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTD--HKSKVF-SVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~--~~~~~~-~~d~~~   46 (143)
                      .++.+|.++|++||||||+++.|++.+...+  .+...+ +.|++.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~   74 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY   74 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence            4578999999999999999999999886432  334445 787763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.49  E-value=1.8e-07  Score=63.72  Aligned_cols=30  Identities=13%  Similarity=0.128  Sum_probs=26.0

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+++..+|+|+|++|||||||++.|.+.+.
T Consensus        15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            456778999999999999999999998764

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=98.49  E-value=1.3e-05  Score=54.53  Aligned_cols=124  Identities=13%  Similarity=0.122  Sum_probs=63.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc--cCchhhhhHHHH---HHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR--VDNTEGYNIRQL---SAREAQE   79 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~   79 (143)
                      ++.+|+++|.|||||+|+|..+.+.++..  .+.+++..+..+.......+.++-.  .+..-....+..   +......
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~   87 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ   87 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh
Confidence            45799999999999999999999877643  3456666654432111111222100  000000001111   1111111


Q ss_pred             H---H-HHHH--hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713          80 D---A-TKWL--KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN  135 (143)
Q Consensus        80 ~---~-~~~l--~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~  135 (143)
                      .   . +...  .....++|+|+.-...+ -+.+.+ .   ++..+.+|.+.++.++-.+|.
T Consensus        88 ~d~~~~~~~~~~~~~~~~vII~dvR~~~E-v~~fr~-~---~g~~~~iirI~as~~~R~~Rg  144 (202)
T 3ch4_B           88 ADPGFFCRKIVEGISQPIWLVSDTRRVSD-IQWFRE-A---YGAVTQTVRVVALEQSRQQRG  144 (202)
T ss_dssp             HCTTTTHHHHSBTCCCSEEEECCCCSHHH-HHHHHH-H---HGGGEEEEEEEECHHHHHHTT
T ss_pred             cCchHHHHHHHHhcCCCcEEEeCCCCHHH-HHHHHH-h---CCCcEEEEEEECCHHHHHHHh
Confidence            0   0 1111  11234788888766554 233333 2   244477788889988877774

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.49  E-value=2e-06  Score=62.05  Aligned_cols=42  Identities=33%  Similarity=0.519  Sum_probs=36.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +.+|+++|++|+||||++..|+..+...+.++.++..|.++.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~  139 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP  139 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence            678999999999999999999998877788888888876544

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.48  E-value=7.6e-08  Score=65.20  Aligned_cols=27  Identities=19%  Similarity=0.228  Sum_probs=24.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +++.+|+++|+|||||||+++.|+..+
T Consensus         4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            4 EKGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            456799999999999999999999876

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.48  E-value=1.7e-07  Score=63.88  Aligned_cols=39  Identities=33%  Similarity=0.521  Sum_probs=29.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .++.+|.++|++||||||+++.|+..++.   ...++..|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~   42 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY   42 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence            45679999999999999999999988752   2345555543

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=98.47  E-value=9.3e-07  Score=60.98  Aligned_cols=28  Identities=25%  Similarity=0.261  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..+|++.|++||||||+++.|++++..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4679999999999999999999999975

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=98.46  E-value=6.4e-08  Score=67.36  Aligned_cols=39  Identities=21%  Similarity=0.392  Sum_probs=30.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      .++.+|.++|++||||||+++.|++.++..     .++.|.+.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~-----~~d~d~~~~   52 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFT-----YLDTGAMYR   52 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCc-----eecCCCeeE
Confidence            356789999999999999999999988754     445555543

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=98.46  E-value=1.5e-07  Score=62.54  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=33.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.++|++||||||++..|+..+...++++.++..|
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~   41 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH   41 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence            45899999999999999999999988778888887654

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.45  E-value=1.2e-07  Score=63.37  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=24.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+..+++++|++||||||+++.|...+.
T Consensus         3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            3 HMRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4567999999999999999999998753

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.44  E-value=4.3e-06  Score=63.08  Aligned_cols=44  Identities=27%  Similarity=0.315  Sum_probs=38.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ++.+|+++|++||||||++..|+..+...+.++.++..|.++..
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~a  140 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA  140 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCch
Confidence            56789999999999999999999999877888888888866544

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.43  E-value=1.3e-06  Score=67.06  Aligned_cols=43  Identities=26%  Similarity=0.391  Sum_probs=32.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .++.+|+|+|++||||||+++.|+..+...+-++.+...|.++
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r  333 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR  333 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence            3568999999999999999999998876545445444455443

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.42  E-value=2.3e-06  Score=61.33  Aligned_cols=29  Identities=31%  Similarity=0.460  Sum_probs=25.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +..++|+|+||+||||+|+.+++.++..+
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l~~~~   95 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLLHRLG   95 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            45799999999999999999999886543

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=98.42  E-value=1.7e-07  Score=72.16  Aligned_cols=28  Identities=11%  Similarity=-0.001  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ...+|+|+|+|||||||+|+.|+++|+.
T Consensus       394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          394 QGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            4579999999999999999999999986

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.40  E-value=9.2e-07  Score=66.21  Aligned_cols=29  Identities=34%  Similarity=0.457  Sum_probs=25.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-|+|.||||+|||++|+.+|..++..
T Consensus       181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~  209 (405)
T 4b4t_J          181 QPKGVILYGPPGTGKTLLARAVAHHTDCK  209 (405)
T ss_dssp             CCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence            46789999999999999999999998654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.40  E-value=9.6e-07  Score=66.78  Aligned_cols=29  Identities=31%  Similarity=0.366  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-|+|.||||+|||++|+.+|..++..
T Consensus       214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~  242 (434)
T 4b4t_M          214 APKGALMYGPPGTGKTLLARACAAQTNAT  242 (434)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             CCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence            46789999999999999999999998654

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.38  E-value=4.5e-07  Score=62.40  Aligned_cols=42  Identities=17%  Similarity=0.101  Sum_probs=34.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .+..++++|+||+||||+++.+++.+...+.+...++.+++.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~   92 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA   92 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence            356899999999999999999999887767777777766543

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.1e-06  Score=66.50  Aligned_cols=29  Identities=34%  Similarity=0.453  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-|+|+||||+|||++|+.+|..++..
T Consensus       214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~  242 (437)
T 4b4t_L          214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN  242 (437)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            46789999999999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.37  E-value=2.6e-07  Score=66.41  Aligned_cols=30  Identities=20%  Similarity=0.343  Sum_probs=26.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      .|..+++.|+||+|||++|+.+++.++...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~   64 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMGINP   64 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence            467899999999999999999999986443

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.37  E-value=6.5e-07  Score=64.80  Aligned_cols=42  Identities=19%  Similarity=0.372  Sum_probs=32.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~   45 (143)
                      .++.+|.++|++||||||+++.|+..+.  -..-.+.+++.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            3467999999999999999999998876  22334556666654

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.37  E-value=1.2e-06  Score=66.06  Aligned_cols=29  Identities=31%  Similarity=0.401  Sum_probs=25.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-|+|.||||+|||++|+.+|..++..
T Consensus       205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~  233 (428)
T 4b4t_K          205 PPRGVLLYGPPGTGKTMLVKAVANSTKAA  233 (428)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            46789999999999999999999998654

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=98.36  E-value=3.8e-06  Score=57.33  Aligned_cols=28  Identities=25%  Similarity=0.250  Sum_probs=24.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++++|+||+||||+++.+++.+...
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~   72 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGLNCE   72 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            4589999999999999999999888643

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.35  E-value=7.2e-07  Score=60.31  Aligned_cols=41  Identities=24%  Similarity=0.145  Sum_probs=33.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      ..++++|+||+||||+|+.++..+...+.+...++...+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~   95 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR   95 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence            68999999999999999999998876667666677665443

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=98.32  E-value=6.7e-06  Score=55.92  Aligned_cols=35  Identities=23%  Similarity=0.231  Sum_probs=26.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..+++++|+|||||||++..++.   ..+..+.+++.+
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~   54 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE   54 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence            46899999999999999999987   223444555543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.32  E-value=4.4e-06  Score=59.25  Aligned_cols=28  Identities=32%  Similarity=0.425  Sum_probs=24.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..++|+|+||+||||+|+.+++.++.
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~   77 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNA   77 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            4567999999999999999999998754

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.30  E-value=1.8e-06  Score=65.60  Aligned_cols=29  Identities=31%  Similarity=0.386  Sum_probs=26.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-|+|.||||+|||++|+.+|..++..
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e~~~~  270 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANRTDAT  270 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence            46789999999999999999999998754

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.30  E-value=2.3e-07  Score=70.22  Aligned_cols=44  Identities=34%  Similarity=0.526  Sum_probs=37.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ++.+|+++|+|||||||++..|+..+...+.++.++..|.++..
T Consensus        98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~  141 (432)
T 2v3c_C           98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA  141 (432)
T ss_dssp             SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch
Confidence            46799999999999999999999988777788888888866544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=98.30  E-value=2.1e-05  Score=57.02  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=31.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..+++++|.||+||||++..++......+.++.+|+.+
T Consensus        68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            46899999999999999999997765556667777654

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=2.3e-06  Score=64.48  Aligned_cols=29  Identities=38%  Similarity=0.488  Sum_probs=25.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .|.-|+|+||||+|||++|+.+|..++..
T Consensus       215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~  243 (437)
T 4b4t_I          215 PPKGVILYGAPGTGKTLLAKAVANQTSAT  243 (437)
T ss_dssp             CCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred             CCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence            46789999999999999999999998754

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=98.28  E-value=7.8e-07  Score=59.37  Aligned_cols=37  Identities=22%  Similarity=0.202  Sum_probs=30.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      ..+++++|++||||||+.+.|...+...+.++..+..
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~   42 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH   42 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence            4588999999999999999999888666666666644

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.27  E-value=6.4e-06  Score=60.67  Aligned_cols=38  Identities=16%  Similarity=0.135  Sum_probs=30.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|+|||||||++..++..+...+..+.+++.+
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E   98 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE   98 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            46899999999999999999997765556666666554

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=98.27  E-value=5.4e-07  Score=62.77  Aligned_cols=27  Identities=22%  Similarity=0.320  Sum_probs=24.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++.+|++.|++||||||+++.|++++.
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            468999999999999999999999974

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=98.26  E-value=2.5e-06  Score=62.95  Aligned_cols=38  Identities=18%  Similarity=0.146  Sum_probs=30.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.+.|+|||||||++..++..+...+-++..++.+
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E   98 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE   98 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence            46899999999999999999998775555555555543

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.26  E-value=7.5e-07  Score=62.27  Aligned_cols=29  Identities=24%  Similarity=0.458  Sum_probs=25.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ++.+|.++|++||||||+++.|+..++..
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~   52 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQN   52 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence            45789999999999999999999987654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.26  E-value=6.5e-06  Score=59.73  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=24.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +.-|+|+|+||+|||++|+.+++.++.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~   77 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANS   77 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence            467999999999999999999998754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.26  E-value=7.8e-07  Score=65.04  Aligned_cols=42  Identities=24%  Similarity=0.396  Sum_probs=34.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .++.++.++|++||||||+++.|+..+...+-++.+...|.+
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            457899999999999999999999888666666666666544

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=98.25  E-value=2.1e-05  Score=58.05  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=31.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|+|||||||+|..++..+...+.++.+++.+
T Consensus        63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E  100 (356)
T 1u94_A           63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE  100 (356)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence            46899999999999999999998775556667777663

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=98.25  E-value=1.1e-05  Score=59.10  Aligned_cols=38  Identities=26%  Similarity=0.253  Sum_probs=32.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|.||+||||++..++..+...+.++.+|+.+
T Consensus        46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE   83 (338)
T 4a1f_A           46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE   83 (338)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence            35899999999999999999998776567777788765

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.25  E-value=1.4e-06  Score=61.08  Aligned_cols=40  Identities=28%  Similarity=0.529  Sum_probs=35.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +++.+++++|.+||||||++..|+..+. .+.++.++..|.
T Consensus        12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~   51 (262)
T 1yrb_A           12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT   51 (262)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred             cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            4567999999999999999999999998 888888887663

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=98.24  E-value=5.9e-06  Score=59.60  Aligned_cols=109  Identities=12%  Similarity=0.144  Sum_probs=70.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .+.+|+|-|.-||||||.++.|.+.+.-.++++..+........      ..+++                   ...+..
T Consensus        85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~------~~~yl-------------------~R~~~~  139 (304)
T 3czq_A           85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETER------GQWYF-------------------QRYVAT  139 (304)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHH------TSCTT-------------------HHHHTT
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHH------hchHH-------------------HHHHHh
Confidence            47899999999999999999999999888876666544331111      01111                   112223


Q ss_pred             HhcCCeEEEEeCCchhH------------HHHHH-------HHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          85 LKNDGEVAIIDGTTATM------------EKRKQ-------IHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~------------~~r~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +-..|.++|+|-+....            ...+.       +.. ++...|.+++-+++.+|.++-.+|...|.
T Consensus       140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~-~L~~~G~~~lKf~L~Is~eeq~kR~~~R~  212 (304)
T 3czq_A          140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEE-MIANEGIHLFKFWINIGREMQLKRFHDRR  212 (304)
T ss_dssp             CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHH-HHHHHTCEEEEEEEECCHHHHHHHHHHHH
T ss_pred             cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHhCCCeeEEEEEECCHHHHHHHHHHhh
Confidence            32458888888664221            11111       111 23345889999999999999999987664

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.23  E-value=1.2e-06  Score=56.84  Aligned_cols=37  Identities=11%  Similarity=0.053  Sum_probs=28.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      ...++++|++||||||+++.++..+...+.+...++.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~   72 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA   72 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence            3578899999999999999999887544544444433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.23  E-value=1.1e-06  Score=58.03  Aligned_cols=28  Identities=29%  Similarity=0.358  Sum_probs=24.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..++++|+||+||||+++.+++.+..
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3567899999999999999999998754

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=98.22  E-value=1.5e-05  Score=59.08  Aligned_cols=39  Identities=15%  Similarity=0.141  Sum_probs=31.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..++++.|+|||||||+|..++......+..+.+++.+.
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            458899999999999999999987655566677776653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.21  E-value=2.4e-06  Score=62.03  Aligned_cols=42  Identities=19%  Similarity=0.342  Sum_probs=32.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC-C-CCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-D-HKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~-~~~~~~~~d~~   45 (143)
                      .++.+|.++|++||||||+++.|+..+... | .++.++..|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            456799999999999999999999877432 2 34566777654

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.21  E-value=1.1e-06  Score=63.58  Aligned_cols=40  Identities=30%  Similarity=0.313  Sum_probs=31.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++.+|.++|++||||||+++.|+..+...+-++.+...|.
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~  140 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT  140 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence            4679999999999999999999988865555555555443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.19  E-value=1.3e-06  Score=63.20  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=31.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      ++.++.++|++||||||+++.|+..+...+-++.+...|.+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~  139 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF  139 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            56799999999999999999999887544444444444433

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=98.17  E-value=3.6e-07  Score=64.49  Aligned_cols=27  Identities=19%  Similarity=0.222  Sum_probs=24.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++.+|+|.|++||||||+++.|++.+.
T Consensus        23 ~~~~I~ieG~~GsGKST~~~~L~~~l~   49 (263)
T 1p5z_B           23 RIKKISIEGNIAAGKSTFVNILKQLCE   49 (263)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            357999999999999999999998873

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=98.17  E-value=1.7e-06  Score=58.12  Aligned_cols=36  Identities=19%  Similarity=0.194  Sum_probs=28.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      +..+++++|+|||||||++..++..+...+.++.++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            456899999999999999988887765555555444

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.17  E-value=1.5e-06  Score=64.20  Aligned_cols=43  Identities=28%  Similarity=0.353  Sum_probs=32.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .++.+|.|+|++||||||+++.|+..+...+-++.+...|.++
T Consensus       155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            3568999999999999999999998876545445555545443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.15  E-value=1.2e-06  Score=59.47  Aligned_cols=26  Identities=35%  Similarity=0.414  Sum_probs=22.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..+++++|++||||||+.+.|...+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            46899999999999999999998763

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.15  E-value=2e-05  Score=59.66  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=30.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAY   45 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~   45 (143)
                      +..++|+|+||+||||+++.++..+...  +.+...++...+
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~  171 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF  171 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence            4578999999999999999999887433  444555565544

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=98.15  E-value=5.1e-05  Score=57.58  Aligned_cols=38  Identities=24%  Similarity=0.302  Sum_probs=31.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..+++++|.||+||||++..++......+.++.+|+.+
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            46899999999999999999998775557777787665

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.15  E-value=1.3e-06  Score=61.16  Aligned_cols=28  Identities=32%  Similarity=0.406  Sum_probs=24.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..++++|+||+||||+|+.+++.++.
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~   65 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQV   65 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3457899999999999999999998754

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.14  E-value=8.9e-06  Score=59.91  Aligned_cols=27  Identities=26%  Similarity=0.304  Sum_probs=23.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +.-|+|+|+||+|||++|+.+++.++.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~~  110 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEANS  110 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            356899999999999999999999853

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.13  E-value=2.7e-06  Score=62.72  Aligned_cols=41  Identities=24%  Similarity=0.324  Sum_probs=34.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .++.+|+++|.||+||||++..|+..+...+.++.++..|.
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp  117 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP  117 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence            34678999999999999999999998877788888887763

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=98.13  E-value=8.9e-07  Score=58.92  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=28.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      .++.++|++||||||+++.|...+...+++...+..
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~   38 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR   38 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence            578999999999999999999988665555555443

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.13  E-value=1.9e-06  Score=56.80  Aligned_cols=28  Identities=29%  Similarity=0.286  Sum_probs=24.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..++++|+||+||||+++.+++.+..
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            3457899999999999999999998744

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.13  E-value=2.8e-06  Score=60.95  Aligned_cols=37  Identities=24%  Similarity=0.193  Sum_probs=28.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++|+|+||+||||+|+.|++.+.........++..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~   84 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT   84 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence            4799999999999999999999885543334444443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.12  E-value=1.5e-06  Score=60.90  Aligned_cols=27  Identities=37%  Similarity=0.495  Sum_probs=23.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +.-++++|+||+||||+|+.++..++.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~   71 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKV   71 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence            456999999999999999999988753

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.12  E-value=3.2e-06  Score=61.21  Aligned_cols=40  Identities=15%  Similarity=0.042  Sum_probs=31.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +..++++|+||+||||+++.+++.+...+.+...++.+++
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~   76 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   76 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence            3578999999999999999999988544555666666654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.11  E-value=2e-06  Score=57.53  Aligned_cols=24  Identities=33%  Similarity=0.512  Sum_probs=22.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+.++|++||||||+.+.|+..++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999998875

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=98.11  E-value=6.9e-05  Score=54.45  Aligned_cols=39  Identities=23%  Similarity=0.270  Sum_probs=29.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC------CCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT------DHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~------~~~~~~~~~d~   44 (143)
                      ..+++++|+|||||||++..++......      +..+.+++.+.
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            4589999999999999999999765332      34555665543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.11  E-value=1.2e-06  Score=63.12  Aligned_cols=28  Identities=29%  Similarity=0.305  Sum_probs=24.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..|+|+|+||+||||+|+.++..++.
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~   75 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQA   75 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence            3568999999999999999999998753

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=98.11  E-value=1.6e-06  Score=59.36  Aligned_cols=26  Identities=12%  Similarity=0.317  Sum_probs=23.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..+++.|+||+||||+|..|++.+.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999999874

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=98.11  E-value=5.2e-05  Score=55.53  Aligned_cols=28  Identities=36%  Similarity=0.405  Sum_probs=24.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..+..++++|+||+||||+++.+++.+.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            3466899999999999999999998873

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.10  E-value=2e-06  Score=59.41  Aligned_cols=27  Identities=15%  Similarity=0.148  Sum_probs=23.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..+++++|++||||||+.+.|...+.
T Consensus        15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           15 QGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            356999999999999999999998764

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=98.10  E-value=1.4e-06  Score=64.26  Aligned_cols=29  Identities=34%  Similarity=0.461  Sum_probs=25.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .+..++|.|+||+|||++|+.|++.++..
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~~~   78 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLDVP   78 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            35679999999999999999999998544

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=98.10  E-value=8.6e-06  Score=65.85  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=25.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .|.-|+|.|+||+|||++|+.++..++.
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~elg~  264 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANETGA  264 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4678999999999999999999988754

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=98.09  E-value=4.7e-06  Score=60.31  Aligned_cols=42  Identities=14%  Similarity=0.145  Sum_probs=35.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRR   47 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~   47 (143)
                      ...++|.|+||+|||++|..++..+. ..+.++..++..++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~  194 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI  194 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence            46899999999999999999999887 7777777777766544

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.08  E-value=2.3e-06  Score=60.54  Aligned_cols=30  Identities=33%  Similarity=0.407  Sum_probs=25.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..+..++++|+||+||||+|+.+++.++..
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~   91 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESNFP   91 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            345689999999999999999999987543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.08  E-value=1.4e-05  Score=58.90  Aligned_cols=27  Identities=26%  Similarity=0.427  Sum_probs=24.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+..|+|+|+||+||||+|+.+++.++
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            356899999999999999999998874

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=98.07  E-value=1.6e-06  Score=65.66  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=26.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .+.-|+|+|+||+||||+|+.|++.++..++
T Consensus        49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~   79 (444)
T 1g41_A           49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI   79 (444)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHHHcCCCce
Confidence            3567999999999999999999999865443

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=98.07  E-value=5e-05  Score=52.44  Aligned_cols=38  Identities=18%  Similarity=0.101  Sum_probs=27.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH-ccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL-TWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l-~~~~~~~~~~~~d   43 (143)
                      ..+++++|.||+|||++|.+++... ...+..+.+++.+
T Consensus        30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E   68 (251)
T 2zts_A           30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE   68 (251)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence            4689999999999999999987542 2334555566543

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.07  E-value=1.6e-06  Score=61.91  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=24.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..+++.|+||+||||+|+.+++.++.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~   80 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSA   80 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence            568999999999999999999998753

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=98.07  E-value=2e-06  Score=63.35  Aligned_cols=29  Identities=31%  Similarity=0.491  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ...|+++|+|||||||+++.|++.++..+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            45699999999999999999999887654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.07  E-value=1.2e-06  Score=60.52  Aligned_cols=26  Identities=27%  Similarity=0.344  Sum_probs=17.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHH-HHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLS-RYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~-~~l   30 (143)
                      +..++.++|++||||||+++.|+ ..+
T Consensus        26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           26 VGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCCEEEEECSCC----CHHHHHHC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            34689999999999999999999 765

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=98.07  E-value=0.00011  Score=55.73  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=59.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc-CCCCceeEehhh----hhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKVFSVSA----YRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQED   80 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
                      ..+++++|.||+||||++..++..... .+.++.+|+.+.    +...+.....+.+.-...  .+..-...  ...+..
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~--~g~l~~~~--~~~~~~  275 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVR--LGQLTDRD--FSRLVD  275 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCC--GGGCCHHH--HHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHh--CCCCCHHH--HHHHHH
Confidence            368999999999999999999977643 366777776642    222211111111111000  00000000  111223


Q ss_pred             HHHHHhcCCeEEEEeCCchh-HHHHHHHHHHHHhhcCCEEEEEEe
Q psy2713          81 ATKWLKNDGEVAIIDGTTAT-MEKRKQIHDYFARKMGFKVLFVEL  124 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~-~~~r~~~~~~~~~~~~~~~~~v~~  124 (143)
                      +...+.. ....+.|.+..+ .+.+..+.. +.++++..+++|.-
T Consensus       276 a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~-l~~~~~~~lIvID~  318 (444)
T 2q6t_A          276 VASRLSE-APIYIDDTPDLTLMEVRARARR-LVSQNQVGLIIIDY  318 (444)
T ss_dssp             HHHHHHT-SCEEEECCTTCBHHHHHHHHHH-HHHHSCCCEEEEEC
T ss_pred             HHHHHhc-CCEEEECCCCCCHHHHHHHHHH-HHHHcCCCEEEEcC
Confidence            3333433 345555654333 344555666 77777888877754

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=98.06  E-value=1.4e-05  Score=58.27  Aligned_cols=23  Identities=35%  Similarity=0.390  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .++++.|+||+||||+|.+++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            56799999999999999999876

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.06  E-value=1.6e-05  Score=58.21  Aligned_cols=28  Identities=25%  Similarity=0.250  Sum_probs=24.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++++|+||+||||+++.+++.+.+.
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~~   65 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNCE   65 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4578999999999999999999998653

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.05  E-value=4.4e-05  Score=55.68  Aligned_cols=29  Identities=31%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      +..++|+|+||+||||+|+.+++.+....
T Consensus        24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~   52 (334)
T 1a5t_A           24 HHALLIQALPGMGDDALIYALSRYLLCQQ   52 (334)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred             ceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence            56799999999999999999999987543

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=98.05  E-value=3.7e-05  Score=51.68  Aligned_cols=38  Identities=16%  Similarity=0.146  Sum_probs=32.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus         3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~   40 (206)
T 4dzz_A            3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP   40 (206)
T ss_dssp             EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            44555588999999999999999988899999998874

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=98.04  E-value=4e-06  Score=57.04  Aligned_cols=26  Identities=27%  Similarity=0.174  Sum_probs=23.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ...|+++|++||||||+|..|+++..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~   59 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH   59 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence            46799999999999999999998753

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.03  E-value=2.7e-06  Score=60.59  Aligned_cols=25  Identities=36%  Similarity=0.408  Sum_probs=22.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      -+++.|+|||||||+++.|+..++.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHcCC
Confidence            3999999999999999999987653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.03  E-value=3e-06  Score=61.84  Aligned_cols=27  Identities=41%  Similarity=0.400  Sum_probs=23.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++++|+||+||||+++.++..++.
T Consensus        51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~   77 (334)
T 1in4_A           51 LDHVLLAGPPGLGKTTLAHIIASELQT   77 (334)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            357899999999999999999998853

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=98.03  E-value=1.7e-06  Score=60.88  Aligned_cols=30  Identities=37%  Similarity=0.393  Sum_probs=25.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      +.-++++|+||+||||+|+.+++.++...+
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~   73 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFF   73 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            345889999999999999999998865443

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=98.03  E-value=4.2e-05  Score=58.78  Aligned_cols=111  Identities=12%  Similarity=0.063  Sum_probs=70.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      ..+.+|+|-|..||||+|.++.|.+.+.-.|+++..+........      ..+++                   ...+.
T Consensus        41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~------~~~yl-------------------~R~~~   95 (500)
T 3czp_A           41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEEL------ERPPQ-------------------WRFWR   95 (500)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHH------TSCTT-------------------HHHHH
T ss_pred             CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhc------cCChh-------------------hhHHH
Confidence            347899999999999999999999999887776666644433222      11221                   11222


Q ss_pred             HHhcCCeEEEEeCCchhHH------------HHH----H---HHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATME------------KRK----Q---IHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~------------~r~----~---~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+-..|.++|+|-+....-            ..+    .   +.. ++...|+.++.+++.+|.++-.+|...|..
T Consensus        96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~-~L~~~g~~i~KffL~is~eeq~kRl~~R~~  170 (500)
T 3czp_A           96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFER-MLCDEGALLFKFWFHLSKKQLKERLKALEK  170 (500)
T ss_dssp             HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-HHHHTTCEEEEEEEECCHHHHHHCC-----
T ss_pred             hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHhcCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence            3434578888887643221            111    1   122 355568999999999999999999888754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=98.03  E-value=3.9e-06  Score=57.45  Aligned_cols=38  Identities=18%  Similarity=0.245  Sum_probs=28.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++++.|+|||||||+++.++..+...+-++.+++.+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~   60 (235)
T 2w0m_A           23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE   60 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence            36899999999999999999996654334445555543

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.02  E-value=0.00016  Score=54.17  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..++.++|+||||||||+..|+-.
T Consensus       178 Gei~~I~G~sGsGKTTLl~~la~~  201 (400)
T 3lda_A          178 GSITELFGEFRTGKSQLCHTLAVT  201 (400)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHH
Confidence            358999999999999999988744

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.01  E-value=2.9e-06  Score=58.37  Aligned_cols=26  Identities=23%  Similarity=0.273  Sum_probs=23.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +..++.++|++||||||+.+.|+..+
T Consensus        22 ~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           22 NIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            34689999999999999999999865

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.01  E-value=3.7e-06  Score=54.17  Aligned_cols=41  Identities=20%  Similarity=0.359  Sum_probs=26.7

Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcH
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDE  129 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~  129 (143)
                      ....+++|.+.........+.+ .+++.+.++++|---++..
T Consensus        81 ~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~  121 (161)
T 2dyk_A           81 EVVLFAVDGRAELTQADYEVAE-YLRRKGKPVILVATKVDDP  121 (161)
T ss_dssp             SEEEEEEESSSCCCHHHHHHHH-HHHHHTCCEEEEEECCCSG
T ss_pred             CEEEEEEECCCcccHhHHHHHH-HHHhcCCCEEEEEECcccc
Confidence            3556778988744444455666 6666678887776666654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.01  E-value=3.6e-06  Score=54.18  Aligned_cols=27  Identities=26%  Similarity=0.318  Sum_probs=22.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +.-|++.|+||+|||++|+.+.+....
T Consensus        24 ~~~vll~G~~GtGKt~lA~~i~~~~~~   50 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTGARYLHQFGRN   50 (145)
T ss_dssp             CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence            345899999999999999999877543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.00  E-value=2.8e-06  Score=60.73  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=24.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..++|+|+||+||||+|+.+++.++.
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l~~   76 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLANA   76 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3567899999999999999999999854

>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}

Probab=98.00  E-value=5.4e-05  Score=54.04  Aligned_cols=110  Identities=16%  Similarity=0.172  Sum_probs=72.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .+.+|+|-|..||||++..+.|.+.+.-.|+++..+......+.      ..+++                   ...+..
T Consensus        74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~------~~~yl-------------------wR~~~~  128 (289)
T 3rhf_A           74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEK------SHDFL-------------------WRIEKQ  128 (289)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHH------TSCTT-------------------HHHHTT
T ss_pred             CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhh------cCCHH-------------------HHHHHh
Confidence            47899999999999999999999999877776666644332221      11111                   112233


Q ss_pred             HhcCCeEEEEeCCchhHH------------H-------HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 LKNDGEVAIIDGTTATME------------K-------RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~------------~-------r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +-..|.++|+|-+-+..-            .       -..+.. ++...|+.++=+++.++.++-.+|-..|..
T Consensus       129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~-~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~  202 (289)
T 3rhf_A          129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFES-RLTEQGTTIVKVMLNISKDEQKKRLIARLD  202 (289)
T ss_dssp             CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHH-HHHHTTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHH-HHHhCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence            334578888877653221            0       112333 444568888888889999998888877653

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.00  E-value=5.1e-06  Score=57.44  Aligned_cols=38  Identities=21%  Similarity=0.207  Sum_probs=29.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..+++++|+|||||||++.+++..+...+..+.+++.+
T Consensus        23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e   60 (247)
T 2dr3_A           23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE   60 (247)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence            46899999999999999999987654445556666554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.00  E-value=3.9e-06  Score=61.07  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=23.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.-|+|+|+||+|||++|+.+++.+
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            4689999999999999999999987

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.00  E-value=1.4e-05  Score=57.76  Aligned_cols=27  Identities=26%  Similarity=0.400  Sum_probs=24.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+.++++.|+||+||||+++.+++.++
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~   73 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVN   73 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            456889999999999999999999874

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.99  E-value=3.6e-06  Score=56.87  Aligned_cols=26  Identities=35%  Similarity=0.353  Sum_probs=22.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .++++|+||+||||+++.+++.+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~   65 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGE   65 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            48999999999999999999887443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.99  E-value=3e-06  Score=62.67  Aligned_cols=27  Identities=30%  Similarity=0.460  Sum_probs=24.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|+||+||||+|+.+++.++.
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l~~   98 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHLDI   98 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457999999999999999999998854

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.99  E-value=5.9e-06  Score=59.47  Aligned_cols=42  Identities=29%  Similarity=0.340  Sum_probs=35.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      ++.+|.++|++||||||++..|+..+...+.++.++..|..+
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            467889999999999999999999887667777777776544

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.98  E-value=4.5e-06  Score=56.79  Aligned_cols=26  Identities=31%  Similarity=0.354  Sum_probs=23.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..++.+.|++||||||+.+.|+..+.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46899999999999999999998763

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.97  E-value=9.2e-06  Score=56.24  Aligned_cols=37  Identities=24%  Similarity=0.202  Sum_probs=31.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      +..+++++|+||+||||.+..++.++...+.++.++.
T Consensus        11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~   47 (223)
T 2b8t_A           11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK   47 (223)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence            3479999999999999999999998877777777773

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.96  E-value=7.7e-06  Score=55.66  Aligned_cols=25  Identities=20%  Similarity=0.316  Sum_probs=21.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++++++++|+||||||++|..+...
T Consensus         4 ~~mi~l~tG~pGsGKT~~a~~~~~~   28 (199)
T 2r2a_A            4 MAEICLITGTPGSGKTLKMVSMMAN   28 (199)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence            3569999999999999999887544

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=97.95  E-value=5.8e-05  Score=57.97  Aligned_cols=38  Identities=5%  Similarity=-0.066  Sum_probs=32.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d   43 (143)
                      ..++++.|.||+||||++.+++...... +.++.+++.+
T Consensus       242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            4689999999999999999999887655 7778888765

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.94  E-value=7.4e-06  Score=57.27  Aligned_cols=24  Identities=42%  Similarity=0.437  Sum_probs=22.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      -++++|+|||||||+++.++..+.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998875

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.93  E-value=1e-05  Score=53.03  Aligned_cols=27  Identities=26%  Similarity=0.302  Sum_probs=23.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..++.+.|+.||||||+.+.|+..++
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~   58 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence            346899999999999999999998873

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=97.92  E-value=7.9e-06  Score=59.93  Aligned_cols=27  Identities=30%  Similarity=0.379  Sum_probs=24.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|+||+|||++|+.+++.+..
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~~   96 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALGP   96 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            368999999999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.92  E-value=1.2e-05  Score=61.09  Aligned_cols=41  Identities=7%  Similarity=0.154  Sum_probs=26.3

Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcH
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDE  129 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~  129 (143)
                      ....+++|+.........++.+ .+++.+.+++++.--++..
T Consensus       104 d~il~VvD~~~~~~~~d~~l~~-~l~~~~~pvilV~NK~D~~  144 (456)
T 4dcu_A          104 DVIIFMVNGREGVTAADEEVAK-ILYRTKKPVVLAVNKLDNT  144 (456)
T ss_dssp             SEEEEEEESSSCSCHHHHHHHH-HHTTCCSCEEEEEECC---
T ss_pred             CEEEEEEeCCCCCChHHHHHHH-HHHHcCCCEEEEEECccch
Confidence            3556778887644444566777 8887888888776656543

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.91  E-value=9.7e-06  Score=57.00  Aligned_cols=39  Identities=18%  Similarity=0.187  Sum_probs=29.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +..|+++|+||+|||++|+.+++.+.........+++..
T Consensus        29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~   67 (265)
T 2bjv_A           29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA   67 (265)
T ss_dssp             CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred             CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence            356889999999999999999988754444445555443

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.91  E-value=8.2e-06  Score=61.99  Aligned_cols=26  Identities=38%  Similarity=0.474  Sum_probs=24.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +.-++|.|+||+|||++|+.+++.++
T Consensus        63 ~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           63 GRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            46799999999999999999999986

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.91  E-value=1.1e-05  Score=57.66  Aligned_cols=37  Identities=11%  Similarity=0.061  Sum_probs=28.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEeh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSV   42 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~   42 (143)
                      ..+++++|+|||||||+++.|+..+... +.++.+++.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~   72 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML   72 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence            4589999999999999999999776433 545555544

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=97.91  E-value=5.7e-06  Score=60.11  Aligned_cols=28  Identities=25%  Similarity=0.204  Sum_probs=24.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..++++|+||+||||+|+.+++.++..
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~~~~   82 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEMSAN   82 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence            4568999999999999999999887543

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.90  E-value=1.2e-05  Score=59.24  Aligned_cols=38  Identities=32%  Similarity=0.478  Sum_probs=30.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..+|.++|+|||||||+.+.|...+...+.++.++..|
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d  111 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD  111 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence            57899999999999999999998775555566666554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.90  E-value=1.6e-05  Score=54.16  Aligned_cols=37  Identities=19%  Similarity=0.182  Sum_probs=27.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      +...|+++|.+||||||+...|...+... .+..++..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~   65 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLG   65 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEEC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEec
Confidence            35689999999999999999999876433 34444443

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.90  E-value=1.1e-05  Score=58.28  Aligned_cols=27  Identities=33%  Similarity=0.433  Sum_probs=22.7

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +++++..|.++|.||||||||...|..
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g   32 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLG   32 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence            345567999999999999999999973

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=97.89  E-value=1.5e-05  Score=55.25  Aligned_cols=39  Identities=21%  Similarity=0.069  Sum_probs=33.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +..|++.|.||+||||++-.++..+...|.++.++..|.
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~   44 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET   44 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            467999999999999999999999888888887777764

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=97.89  E-value=8.3e-06  Score=55.80  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=22.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+++.|+..+
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~   49 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMV   49 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999998754

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=97.88  E-value=3e-05  Score=56.41  Aligned_cols=36  Identities=11%  Similarity=0.067  Sum_probs=26.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC--CCCceeEeh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSV   42 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~   42 (143)
                      -++.+.|+|||||||++.+++......  +-.+..++.
T Consensus        29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~   66 (333)
T 3io5_A           29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS   66 (333)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence            378999999999999999998765432  444555544

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=97.88  E-value=1.7e-05  Score=53.60  Aligned_cols=37  Identities=24%  Similarity=0.203  Sum_probs=32.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      +..+++++|++||||||.+..++.++...+.++.++.
T Consensus         7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k   43 (191)
T 1xx6_A            7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK   43 (191)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            3579999999999999999999999877788888874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.88  E-value=9.9e-06  Score=60.27  Aligned_cols=27  Identities=26%  Similarity=0.139  Sum_probs=24.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++.++++.|+|||||||+++.|+..++
T Consensus       168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~  194 (377)
T 1svm_A          168 KKRYWLFKGPIDSGKTTLAAALLELCG  194 (377)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            456899999999999999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=97.87  E-value=0.00018  Score=54.67  Aligned_cols=38  Identities=21%  Similarity=0.394  Sum_probs=30.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc-CCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~~~~d   43 (143)
                      ..++++.|.||+||||++..++..+.. .+.++.+++.+
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E  241 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE  241 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            468999999999999999999987643 46667777654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=97.87  E-value=1.3e-05  Score=56.77  Aligned_cols=27  Identities=15%  Similarity=0.295  Sum_probs=23.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..+++++|++||||||+.+.|+..+.
T Consensus        24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~   50 (261)
T 2eyu_A           24 KMGLILVTGPTGSGKSTTIASMIDYIN   50 (261)
T ss_dssp             SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence            346899999999999999999998764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.86  E-value=1.4e-05  Score=58.56  Aligned_cols=40  Identities=23%  Similarity=0.366  Sum_probs=32.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +..+|.++|+||+||||+...|+..+...+.+..++..|.
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            4578999999999999999999988765666666766553

>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}

Probab=97.86  E-value=8.7e-05  Score=57.07  Aligned_cols=110  Identities=12%  Similarity=0.089  Sum_probs=74.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .+.+|+|-|.-||||+|..+.|.+.+.-.++++..+......+.      ..+++                   ...+..
T Consensus       299 ~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~------~~~yl-------------------~R~~~~  353 (500)
T 3czp_A          299 HSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER------AQPYL-------------------WRFWRH  353 (500)
T ss_dssp             CEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH------TSCTT-------------------HHHHTT
T ss_pred             CCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh------cchHH-------------------HHHHHh
Confidence            46899999999999999999999999888887777655443322      11222                   111222


Q ss_pred             HhcCCeEEEEeCCchhH------------HHHH-------HHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 LKNDGEVAIIDGTTATM------------EKRK-------QIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~------------~~r~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +-..|.++|+|-+....            ...+       .+.. ++...|+.++-+++.+|.++-.+|...|..
T Consensus       354 lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~-~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~  427 (500)
T 3czp_A          354 IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEE-QLSEYGIIVVKFWLAIDKQTQMERFKEREK  427 (500)
T ss_dssp             CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHH-HHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence            33458888888765322            1111       1222 344568999999999999999999888754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.85  E-value=1.3e-05  Score=56.83  Aligned_cols=24  Identities=42%  Similarity=0.437  Sum_probs=22.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      -++++|+|||||||+++.|+..+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEECCCcChHHHHHHHHHHHcC
Confidence            489999999999999999998875

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.85  E-value=1.1e-05  Score=59.18  Aligned_cols=38  Identities=21%  Similarity=0.246  Sum_probs=28.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC---CCCceeEeh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT---DHKSKVFSV   42 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~---~~~~~~~~~   42 (143)
                      .+..++++|+||+||||+++.+++.+...   +.....++.
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~   84 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT   84 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence            45689999999999999999999887432   333444444

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=97.84  E-value=1.5e-05  Score=58.57  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=23.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .+..++++|+||+||||+++.+++.+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999887

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.84  E-value=6.4e-06  Score=56.99  Aligned_cols=25  Identities=28%  Similarity=0.529  Sum_probs=22.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +..+|.+.|++||||||+++.|+..
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhc
Confidence            4579999999999999999999865

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=97.83  E-value=1.7e-05  Score=58.11  Aligned_cols=39  Identities=31%  Similarity=0.491  Sum_probs=30.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +..++.++|+|||||||+.+.|...+...+-+..++..|
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d   92 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD   92 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence            457899999999999999999998775444555555544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=97.83  E-value=1.3e-05  Score=57.96  Aligned_cols=26  Identities=31%  Similarity=0.613  Sum_probs=23.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +..++.|+|++||||||+++.|+..+
T Consensus       125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          125 KKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            34689999999999999999999886

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.82  E-value=2.6e-05  Score=58.92  Aligned_cols=41  Identities=7%  Similarity=0.145  Sum_probs=26.6

Q ss_pred             CeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHH
Q psy2713          89 GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEE  130 (143)
Q Consensus        89 ~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~  130 (143)
                      ...+++|...........+.+ ++++.+.+++++---++...
T Consensus        85 ~il~vvD~~~~~~~~d~~~~~-~l~~~~~pvilv~NK~D~~~  125 (436)
T 2hjg_A           85 VIIFMVNGREGVTAADEEVAK-ILYRTKKPVVLAVNKLDNTE  125 (436)
T ss_dssp             EEEEEEETTTCSCHHHHHHHH-HHTTCCSCEEEEEECCCC--
T ss_pred             EEEEEEeCCCCCCHHHHHHHH-HHHHcCCCEEEEEECccCcc
Confidence            455778987643344456777 78777888887766666543

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=97.82  E-value=1.3e-05  Score=61.41  Aligned_cols=28  Identities=36%  Similarity=0.482  Sum_probs=24.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      |.-|+|+|+||+||||+|+.++..++..
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~   76 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVP   76 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4568999999999999999999887543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.82  E-value=7.5e-06  Score=59.73  Aligned_cols=24  Identities=29%  Similarity=0.342  Sum_probs=22.1

Q ss_pred             EEEEccCCCChhHHHHHHHHHHcc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ++|+|+||+||||+++.+++.+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcC
Confidence            899999999999999999998753

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=97.81  E-value=1.2e-05  Score=54.25  Aligned_cols=30  Identities=40%  Similarity=0.415  Sum_probs=24.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      ++.++|++||||||+.+.|+..+...|+..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~   32 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV   32 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEECCCCChHHHHHHHHHhhcccCCEEE
Confidence            688999999999999999998774333333

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.80  E-value=2.6e-05  Score=57.34  Aligned_cols=34  Identities=26%  Similarity=0.277  Sum_probs=27.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC-CCCceeEe
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFS   41 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~   41 (143)
                      .++++|+||+||||+++.+++.+... +.....++
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~   80 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN   80 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence            89999999999999999999988654 34444444

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.80  E-value=0.00039  Score=47.00  Aligned_cols=24  Identities=25%  Similarity=0.272  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|++||||||+...|...
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            467999999999999999999865

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=97.79  E-value=8.6e-05  Score=57.01  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+.-|+|+|+||+|||++|+.++..++
T Consensus       237 ~~~~vLL~GppGtGKT~lAraia~~~~  263 (489)
T 3hu3_A          237 PPRGILLYGPPGTGKTLIARAVANETG  263 (489)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred             CCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence            456799999999999999999998864

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=97.78  E-value=1.2e-05  Score=53.93  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=20.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +++++|.+||||||+|.+|+..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc
Confidence            3789999999999999999865

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=97.78  E-value=1e-05  Score=60.11  Aligned_cols=28  Identities=32%  Similarity=0.354  Sum_probs=24.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..|+|+|+||+|||++|+.+++.++..
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~  175 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNAT  175 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence            4689999999999999999999987543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=97.77  E-value=1.5e-05  Score=60.43  Aligned_cols=25  Identities=28%  Similarity=0.312  Sum_probs=23.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.-|+|+|+||+|||++|+.++..+
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999987

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.77  E-value=1.7e-05  Score=61.15  Aligned_cols=27  Identities=33%  Similarity=0.402  Sum_probs=24.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+|+||+||||+|+.+++.++.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~  103 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGY  103 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999998853

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.77  E-value=1.4e-05  Score=55.14  Aligned_cols=24  Identities=25%  Similarity=0.320  Sum_probs=21.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..++.++|+|||||||++..++..
T Consensus        24 G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           24 GSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            468999999999999999999975

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.76  E-value=1.9e-05  Score=57.40  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .++++|+||+||||+++.+++.+.
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            389999999999999999998864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=97.76  E-value=7.4e-06  Score=59.59  Aligned_cols=28  Identities=11%  Similarity=-0.001  Sum_probs=25.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..+..++++|+||+|||++++.+++.+.
T Consensus        43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~   70 (318)
T 3te6_A           43 SQNKLFYITNADDSTKFQLVNDVMDELI   70 (318)
T ss_dssp             TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999999884

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.76  E-value=1.9e-05  Score=52.19  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=23.5

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +++++..|+++|.+||||||+.+.|..
T Consensus         3 ~~~~~~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            3 SHMKSYEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence            355667899999999999999999975

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=97.75  E-value=1.7e-05  Score=56.27  Aligned_cols=26  Identities=23%  Similarity=0.316  Sum_probs=23.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ++..|++.||||+|||++|..|+..+
T Consensus       103 ~~n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          103 KRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence            34689999999999999999999864

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.75  E-value=1.8e-05  Score=57.77  Aligned_cols=25  Identities=24%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +. ++++|+||+||||+++.++..+.
T Consensus        37 ~~-~ll~Gp~G~GKTtl~~~la~~l~   61 (354)
T 1sxj_E           37 PH-LLLYGPNGTGKKTRCMALLESIF   61 (354)
T ss_dssp             CC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence            44 89999999999999999999663

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=97.74  E-value=1.9e-05  Score=55.24  Aligned_cols=27  Identities=19%  Similarity=0.202  Sum_probs=23.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ++|.++|.+||||||+|+.|.+.++..
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~   28 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAV   28 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCe
Confidence            589999999999999999999876543

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.74  E-value=1.6e-05  Score=55.43  Aligned_cols=25  Identities=16%  Similarity=0.250  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+-.+
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl~   55 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCLD   55 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3589999999999999999997543

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.74  E-value=2e-05  Score=61.21  Aligned_cols=28  Identities=32%  Similarity=0.483  Sum_probs=24.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +...++|+|+||+||||+|+.|+..++.
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~  134 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGR  134 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            3458999999999999999999998854

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=97.74  E-value=3.5e-05  Score=56.63  Aligned_cols=41  Identities=20%  Similarity=0.157  Sum_probs=36.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .++.++++.|..|+||||+|..|+..+...+.++-+++.|.
T Consensus        24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   64 (349)
T 3ug7_A           24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP   64 (349)
T ss_dssp             CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred             CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            45678999999999999999999999988899999998886

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=97.72  E-value=1.9e-05  Score=56.81  Aligned_cols=27  Identities=37%  Similarity=0.407  Sum_probs=23.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++++|+||+||||+|+.+++.++.
T Consensus        38 ~~~vll~G~~GtGKT~la~~i~~~~~~   64 (324)
T 1hqc_A           38 LEHLLLFGPPGLGKTTLAHVIAHELGV   64 (324)
T ss_dssp             CCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            457899999999999999999998753

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=97.71  E-value=3.3e-05  Score=56.17  Aligned_cols=39  Identities=21%  Similarity=0.272  Sum_probs=35.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +.++++.|..|+||||+|..|+..+...|.++.+++.|.
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~   52 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP   52 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            579999999999999999999999888899999988875

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=97.70  E-value=3e-05  Score=57.55  Aligned_cols=27  Identities=15%  Similarity=0.295  Sum_probs=24.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..+++++|++||||||+.+.|+..+.
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            346899999999999999999998764

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=97.70  E-value=2.1e-05  Score=59.78  Aligned_cols=26  Identities=38%  Similarity=0.526  Sum_probs=23.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..++|.|+||+||||+|+.|++.++.
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            46899999999999999999998754

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=97.70  E-value=4.9e-05  Score=55.63  Aligned_cols=39  Identities=18%  Similarity=0.104  Sum_probs=35.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ++.++++.|..|+||||+|..++..+...|.++.+++.|
T Consensus        15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D   53 (334)
T 3iqw_A           15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD   53 (334)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence            467899999999999999999999998889999999888

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=97.70  E-value=5.2e-05  Score=51.77  Aligned_cols=27  Identities=30%  Similarity=0.384  Sum_probs=23.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +...|+++|.+||||||+...+...+.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~   63 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLK   63 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            456788999999999999999998753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.70  E-value=1.9e-05  Score=54.52  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=21.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        30 Ge~~~iiG~nGsGKSTLl~~l~Gl~   54 (224)
T 2pcj_A           30 GEFVSIIGASGSGKSTLLYILGLLD   54 (224)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999997443

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.69  E-value=5.3e-05  Score=60.93  Aligned_cols=39  Identities=23%  Similarity=0.269  Sum_probs=30.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .++|+|+||+|||++|+.|++.+...+.+...+++..+.
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~  561 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM  561 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence            699999999999999999999885444445555555443

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.69  E-value=2.5e-05  Score=50.84  Aligned_cols=25  Identities=28%  Similarity=0.518  Sum_probs=21.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      |++..|++.|.||+||||+.+.|..
T Consensus         1 m~~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            1 MKSYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhC
Confidence            3456799999999999999999974

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.69  E-value=2.4e-05  Score=54.67  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=21.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .++.+.|++||||||+.+.|+-.+
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl~   48 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999999998544

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.69  E-value=0.0002  Score=61.96  Aligned_cols=39  Identities=15%  Similarity=0.186  Sum_probs=32.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..+++++|+||+||||+|.+++......+..+.+++.+.
T Consensus       383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~  421 (1706)
T 3cmw_A          383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  421 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence            468999999999999999999977665667777776654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=97.69  E-value=1.4e-05  Score=57.97  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=23.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      -++|.|+||+|||++|+.+++.++..
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~~~   73 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMDLD   73 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence            58999999999999999999987643

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=97.69  E-value=2.2e-05  Score=52.29  Aligned_cols=23  Identities=26%  Similarity=0.265  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+|+|.||+||||+|..|.++
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46999999999999999999875

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=97.68  E-value=2.2e-05  Score=53.73  Aligned_cols=23  Identities=30%  Similarity=0.239  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .++.+.|++||||||+.+.|+-.
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999865

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=97.68  E-value=1.4e-05  Score=58.16  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=22.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      -++|+|+||+|||++|+.+++.+.
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            489999999999999999999875

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=97.68  E-value=0.00021  Score=61.85  Aligned_cols=39  Identities=15%  Similarity=0.186  Sum_probs=32.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..+|++.|+||+||||+|..++......+.++.+++.+.
T Consensus       732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee  770 (1706)
T 3cmw_A          732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  770 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred             CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence            468999999999999999999987766666777776654

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.67  E-value=2.3e-05  Score=54.64  Aligned_cols=25  Identities=32%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+-.+
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999997554

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.67  E-value=3.2e-05  Score=62.55  Aligned_cols=28  Identities=29%  Similarity=0.310  Sum_probs=24.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      |.-|+|.||||+|||.+|+.++..++..
T Consensus       511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~  538 (806)
T 3cf2_A          511 SKGVLFYGPPGCGKTLLAKAIANECQAN  538 (806)
T ss_dssp             CSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred             CceEEEecCCCCCchHHHHHHHHHhCCc
Confidence            4568999999999999999999987654

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=97.67  E-value=3.7e-05  Score=54.10  Aligned_cols=45  Identities=11%  Similarity=0.163  Sum_probs=36.5

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      +.+++.+.+..+..|+||||+|..|+..+...|.++.++..|...
T Consensus        15 ~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~   59 (262)
T 2ph1_A           15 GKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG   59 (262)
T ss_dssp             TTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             ccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            345556677788899999999999999998888888888877543

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.66  E-value=2.9e-05  Score=55.07  Aligned_cols=26  Identities=35%  Similarity=0.367  Sum_probs=22.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..+++++|+|||||||++..++..+.
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            35899999999999999999997553

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.66  E-value=1.2e-05  Score=51.60  Aligned_cols=24  Identities=17%  Similarity=0.030  Sum_probs=20.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .-|++.|+||+|||++|+.+.+..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CcEEEECCCCccHHHHHHHHHHhC
Confidence            458899999999999999987553

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.66  E-value=3.6e-05  Score=56.82  Aligned_cols=27  Identities=22%  Similarity=0.272  Sum_probs=23.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..+++++|++||||||+.+.|...+..
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~  149 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNN  149 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence            358999999999999999999887753

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=97.66  E-value=5.5e-05  Score=55.16  Aligned_cols=41  Identities=15%  Similarity=0.067  Sum_probs=36.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .+.++++.|..|+||||+|..|+..+...|.++.+++.|..
T Consensus        18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~   58 (329)
T 2woo_A           18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA   58 (329)
T ss_dssp             TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred             CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            35788999999999999999999999888999999988753

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.65  E-value=2.9e-05  Score=59.73  Aligned_cols=26  Identities=42%  Similarity=0.474  Sum_probs=23.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      |.-++|+|+||+||||+++.|+..++
T Consensus        64 p~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           64 PKGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34599999999999999999998875

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.64  E-value=3.1e-05  Score=59.06  Aligned_cols=27  Identities=30%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +.-++|+|+||+|||++|+.|++.+..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l~~  227 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQIIN  227 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence            446789999999999999999999743

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.64  E-value=0.00027  Score=62.06  Aligned_cols=40  Identities=15%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +..++++.|+||+||||+|.+++......+..+.+++.+.
T Consensus       382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~  421 (2050)
T 3cmu_A          382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  421 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence            3469999999999999999999987766666777776654

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.64  E-value=2.3e-05  Score=55.86  Aligned_cols=25  Identities=28%  Similarity=0.348  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+-.+
T Consensus        34 Ge~~~iiGpnGsGKSTLl~~l~Gl~   58 (275)
T 3gfo_A           34 GEVTAILGGNGVGKSTLFQNFNGIL   58 (275)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHcCC
Confidence            3579999999999999999997543

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.63  E-value=3e-05  Score=54.19  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl~   52 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4589999999999999999998554

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.63  E-value=2.7e-05  Score=55.23  Aligned_cols=25  Identities=36%  Similarity=0.549  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+-.+
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl~   61 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGYL   61 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3579999999999999999997543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=97.63  E-value=4e-05  Score=54.83  Aligned_cols=23  Identities=39%  Similarity=0.486  Sum_probs=21.6

Q ss_pred             EEEEccCCCChhHHHHHHHHHHc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++++|+||+||||+|+.+++.+.
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~   63 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLF   63 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHhc
Confidence            89999999999999999999874

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=97.63  E-value=7.6e-05  Score=51.26  Aligned_cols=37  Identities=16%  Similarity=0.202  Sum_probs=32.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      +..+.+++|++||||||.+..++.++...+.++.++.
T Consensus        27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k   63 (214)
T 2j9r_A           27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK   63 (214)
T ss_dssp             SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            3478999999999999999999999887788888874

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.63  E-value=0.00021  Score=47.22  Aligned_cols=24  Identities=33%  Similarity=0.285  Sum_probs=20.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+||||||+...|...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            457899999999999999998744

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=97.62  E-value=3.3e-05  Score=55.41  Aligned_cols=24  Identities=38%  Similarity=0.434  Sum_probs=22.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .++++|+||+||||+|+.+++.+.
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~   71 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELF   71 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhc
Confidence            489999999999999999998874

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=97.62  E-value=0.00063  Score=59.82  Aligned_cols=40  Identities=15%  Similarity=0.176  Sum_probs=34.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++..|+++|+||+||||+|..++......+.++..++.++
T Consensus      1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A         1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp             TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence            3578999999999999999999987777788888887653

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.62  E-value=2.9e-05  Score=54.92  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl~   56 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFLE   56 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999997544

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.62  E-value=4.6e-05  Score=54.97  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=28.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +..|+++|+||+|||++|+.+.+.....+.....+++.
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~   62 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA   62 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred             CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence            45689999999999999999998765444444445443

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.61  E-value=3.7e-05  Score=53.95  Aligned_cols=24  Identities=33%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..++.+.|++||||||+.+.|+-.
T Consensus        29 Ge~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           29 GEVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999854

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=97.61  E-value=8.5e-05  Score=55.97  Aligned_cols=28  Identities=14%  Similarity=0.071  Sum_probs=24.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..+++++|++||||||+.+.|...+..
T Consensus       166 ~ggii~I~GpnGSGKTTlL~allg~l~~  193 (418)
T 1p9r_A          166 PHGIILVTGPTGSGKSTTLYAGLQELNS  193 (418)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence            3468999999999999999999988754

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.61  E-value=3.2e-05  Score=54.78  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl~   74 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLLE   74 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence            3589999999999999999997543

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.60  E-value=3.1e-05  Score=54.30  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+-.+
T Consensus        35 Ge~~~i~G~nGsGKSTLl~~l~Gl~   59 (247)
T 2ff7_A           35 GEVIGIVGRSGSGKSTLTKLIQRFY   59 (247)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999997554

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.60  E-value=4.2e-05  Score=54.26  Aligned_cols=24  Identities=29%  Similarity=0.355  Sum_probs=21.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..++.+.|++||||||+.+.|+-.
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            358999999999999999999854

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=97.60  E-value=4.6e-05  Score=48.87  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=21.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++.-|+++|.+||||||+.+.+...
T Consensus         2 ~~~~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            2 TEYKLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhC
Confidence            3456999999999999999999754

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.59  E-value=3.5e-05  Score=54.78  Aligned_cols=25  Identities=36%  Similarity=0.405  Sum_probs=21.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+-.+
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl~   69 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNLY   69 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999997554

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.59  E-value=3.5e-05  Score=54.42  Aligned_cols=25  Identities=36%  Similarity=0.519  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+-.+
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            3589999999999999999998554

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.59  E-value=3.4e-05  Score=53.84  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        32 Ge~~~l~G~nGsGKSTLl~~l~Gl~   56 (240)
T 1ji0_A           32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999997543

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=97.58  E-value=2.7e-05  Score=57.00  Aligned_cols=30  Identities=17%  Similarity=0.128  Sum_probs=26.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ++..+|.|-|+-||||||+++.|++++...
T Consensus         5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~~   34 (334)
T 1p6x_A            5 VTIVRIYLDGVYGIGKSTTGRVMASAASGG   34 (334)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence            345799999999999999999999998763

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.58  E-value=4.5e-05  Score=55.36  Aligned_cols=24  Identities=29%  Similarity=0.338  Sum_probs=21.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .+++++|++||||||+.+.|....
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            589999999999999999998653

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.58  E-value=3.5e-05  Score=54.30  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        33 Ge~~~liG~nGsGKSTLlk~l~Gl~   57 (257)
T 1g6h_A           33 GDVTLIIGPNGSGKSTLINVITGFL   57 (257)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3589999999999999999997543

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=97.58  E-value=5.1e-05  Score=48.75  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |++.-|+++|.+||||||+...+...
T Consensus         1 m~~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            1 MREYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence            34567999999999999999998753

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.58  E-value=3.6e-05  Score=53.33  Aligned_cols=24  Identities=29%  Similarity=0.333  Sum_probs=21.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .++.++|++||||||+.+.|+-.+
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            579999999999999999998554

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.58  E-value=7.6e-05  Score=53.78  Aligned_cols=23  Identities=39%  Similarity=0.507  Sum_probs=20.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ...|+++|.||+|||||.+.|..
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g   29 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLG   29 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            35799999999999999999974

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.57  E-value=5.7e-05  Score=54.08  Aligned_cols=23  Identities=35%  Similarity=0.536  Sum_probs=21.6

Q ss_pred             EEEEccCCCChhHHHHHHHHHHc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++++|+||+||||+|+.+++.+.
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~   67 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELL   67 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhc
Confidence            89999999999999999998874

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.57  E-value=3.8e-05  Score=54.17  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl~   65 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTLI   65 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3589999999999999999997543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=97.57  E-value=7.4e-05  Score=49.60  Aligned_cols=28  Identities=18%  Similarity=0.328  Sum_probs=23.6

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ...++.-|+++|.+|||||||...|...
T Consensus         3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            3 EKKSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            3445677999999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.57  E-value=3.1e-05  Score=53.20  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=21.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        35 Ge~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           35 GNVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999997543

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=97.56  E-value=9.9e-05  Score=50.97  Aligned_cols=42  Identities=12%  Similarity=0.044  Sum_probs=34.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~~   45 (143)
                      +++.+.+..+..|+||||+|..|+..+... +.++.++..|..
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~   45 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP   45 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence            445566667789999999999999999887 999999988754

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=97.56  E-value=9.4e-05  Score=53.25  Aligned_cols=40  Identities=20%  Similarity=0.362  Sum_probs=33.4

Q ss_pred             CCeEEEEEcc-CCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGL-PARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~-pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++.+|+++|. +|+||||+|..|+..+...+.++.++..|.
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~  143 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL  143 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            3467777775 899999999999999987888888887775

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=97.56  E-value=4e-05  Score=50.33  Aligned_cols=28  Identities=21%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             CCCCCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           1 LRQFTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      |.+.++.-|+++|.+|+|||||...+..
T Consensus         1 m~~~~~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            1 MPQSKSRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             -CCEEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCceEEEEEECcCCCCHHHHHHHHHc
Confidence            3445567899999999999999999984

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=97.56  E-value=6.6e-05  Score=58.75  Aligned_cols=41  Identities=17%  Similarity=0.148  Sum_probs=36.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ..+.+++++|.+|+||||+|..|+..+...|.++-+++.|.
T Consensus         6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~   46 (589)
T 1ihu_A            6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (589)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            34578999999999999999999999988899999998884

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=97.56  E-value=3.9e-05  Score=56.62  Aligned_cols=26  Identities=35%  Similarity=0.517  Sum_probs=22.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ...+.++|++||||||+++.|+..+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999998764

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.56  E-value=4.1e-05  Score=54.22  Aligned_cols=25  Identities=16%  Similarity=0.268  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl~   57 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGLI   57 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3579999999999999999997543

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.55  E-value=9.4e-05  Score=54.23  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=28.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc------CCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW------TDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~------~~~~~~~~~~d   43 (143)
                      ..++.++|+|||||||++..++.....      .+..+.+++.+
T Consensus       122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E  165 (343)
T 1v5w_A          122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE  165 (343)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence            468999999999999999999976322      23445555554

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=97.54  E-value=6.8e-05  Score=51.58  Aligned_cols=40  Identities=20%  Similarity=0.150  Sum_probs=33.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++.+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus         2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (237)
T 1g3q_A            2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence            3455566778899999999999999987888888888775

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.54  E-value=4.3e-05  Score=53.66  Aligned_cols=25  Identities=24%  Similarity=0.372  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        26 Ge~~~liG~NGsGKSTLlk~l~Gl~   50 (249)
T 2qi9_C           26 GEILHLVGPNGAGKSTLLARMAGMT   50 (249)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3589999999999999999997544

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=97.53  E-value=3.2e-05  Score=57.11  Aligned_cols=26  Identities=27%  Similarity=0.387  Sum_probs=22.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..+++++|++||||||+.+.|...+.
T Consensus       175 G~~i~ivG~sGsGKSTll~~l~~~~~  200 (361)
T 2gza_A          175 ERVIVVAGETGSGKTTLMKALMQEIP  200 (361)
T ss_dssp             TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            35899999999999999999987654

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.53  E-value=0.00024  Score=46.92  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .-|+++|.+|+|||||.+.+...+
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhc
Confidence            569999999999999998776554

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.53  E-value=5.1e-05  Score=55.81  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=22.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|+|||||||++..++..+
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999775

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=97.53  E-value=8.6e-05  Score=54.65  Aligned_cols=39  Identities=15%  Similarity=0.114  Sum_probs=35.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVS   43 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d   43 (143)
                      ...++++.|..|+||||+|..|+..+.  ..+.++.+++.|
T Consensus        17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D   57 (348)
T 3io3_A           17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD   57 (348)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence            457999999999999999999999998  889999999887

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=97.53  E-value=0.00011  Score=54.21  Aligned_cols=40  Identities=15%  Similarity=0.113  Sum_probs=36.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~   44 (143)
                      .+.++++.|..|+||||+|..|+..+.  ..|.++.+++.|.
T Consensus        17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~   58 (354)
T 2woj_A           17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP   58 (354)
T ss_dssp             SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence            357899999999999999999999998  8899999998885

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=97.52  E-value=5.8e-05  Score=52.17  Aligned_cols=36  Identities=22%  Similarity=0.201  Sum_probs=32.0

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      |.+.|..|+||||+|..|+..+...|.++-++..|.
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~   38 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP   38 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            455999999999999999999988899998887775

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.52  E-value=4.7e-05  Score=54.39  Aligned_cols=25  Identities=36%  Similarity=0.339  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        47 Ge~~~liG~NGsGKSTLlk~l~Gl~   71 (279)
T 2ihy_A           47 GDKWILYGLNGAGKTTLLNILNAYE   71 (279)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3578999999999999999998544

>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1

Probab=97.52  E-value=3.5e-05  Score=57.17  Aligned_cols=31  Identities=29%  Similarity=0.161  Sum_probs=23.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ++..+|.|-|+-||||||+++.|++++...+
T Consensus        47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g   77 (376)
T 1of1_A           47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD   77 (376)
T ss_dssp             CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            3456899999999999999999999886544

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=97.52  E-value=8.8e-05  Score=51.91  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=33.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++.+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus         2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (263)
T 1hyq_A            2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   41 (263)
T ss_dssp             CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            3456666889999999999999999987788888887774

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=97.51  E-value=4.8e-05  Score=53.56  Aligned_cols=25  Identities=24%  Similarity=0.247  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        31 Ge~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           31 GDILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3579999999999999999998544

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.50  E-value=7.3e-05  Score=49.43  Aligned_cols=26  Identities=23%  Similarity=0.261  Sum_probs=22.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +.+.+++|++||||||+...|.-.+.
T Consensus        26 ~g~~~i~G~NGsGKStll~ai~~~l~   51 (182)
T 3kta_A           26 KGFTAIVGANGSGKSNIGDAILFVLG   51 (182)
T ss_dssp             SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            34889999999999999999987653

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.50  E-value=6.9e-05  Score=53.22  Aligned_cols=24  Identities=25%  Similarity=0.393  Sum_probs=21.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..+.++|++||||||+.+.|....
T Consensus         3 f~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            3 FNIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            358899999999999999999665

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.50  E-value=6.5e-05  Score=55.49  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl~   54 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGFE   54 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            3589999999999999999998543

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=97.50  E-value=0.00011  Score=51.51  Aligned_cols=38  Identities=21%  Similarity=0.182  Sum_probs=32.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++|.+.|..|+||||+|..|+..+...|.++.++..|.
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~   39 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence            35566899999999999999999988899998887774

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=97.50  E-value=0.00011  Score=52.38  Aligned_cols=38  Identities=18%  Similarity=0.176  Sum_probs=32.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++|.+.|..|+||||+|..|+..+...+.++.++..|.
T Consensus         3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~   40 (289)
T 2afh_E            3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence            45666899999999999999999987888888887774

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=97.49  E-value=8e-05  Score=51.88  Aligned_cols=40  Identities=20%  Similarity=0.243  Sum_probs=33.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++.+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus         2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~   41 (260)
T 3q9l_A            2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI   41 (260)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            4456666788899999999999999988888888887775

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=97.49  E-value=0.00013  Score=51.74  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=32.6

Q ss_pred             CeEEEEEc-cCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVG-LPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G-~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +.+|+++| .+|+||||+|..|+..+...+.++.++..|.
T Consensus        82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~  121 (271)
T 3bfv_A           82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM  121 (271)
T ss_dssp             CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            45677765 5899999999999999988888888888774

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=97.49  E-value=7.3e-05  Score=48.06  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=21.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++.-|+++|.+||||||+.+.+...
T Consensus         3 ~~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            3 ALHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhC
Confidence            4567999999999999999999753

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=97.49  E-value=6.4e-05  Score=49.75  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=22.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +++.-|+++|.+||||||+...|...
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcC
Confidence            34467999999999999999999854

>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}

Probab=97.49  E-value=0.00029  Score=48.42  Aligned_cols=37  Identities=19%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      +..+.+++|++||||||.+-..+.++...+.++.++.
T Consensus        27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k   63 (219)
T 3e2i_A           27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK   63 (219)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence            3579999999999999966666666666677777763

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=97.49  E-value=0.00015  Score=50.29  Aligned_cols=38  Identities=16%  Similarity=0.122  Sum_probs=32.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      .+..+.+++|++||||||-+..++.++...+.++.++.
T Consensus        17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k   54 (234)
T 2orv_A           17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   54 (234)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            34579999999999999999999988877788887774

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.48  E-value=7.5e-05  Score=48.10  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=21.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++.-|+++|.+||||||+.+.+...
T Consensus         2 ~~~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            2 REYKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcC
Confidence            4567999999999999999999753

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.48  E-value=9.2e-05  Score=49.14  Aligned_cols=24  Identities=25%  Similarity=0.277  Sum_probs=21.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ...-|+++|.+||||||+...|..
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999999974

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.48  E-value=7.2e-05  Score=49.96  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..|+++|++||||||+.+.+...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            47899999999999999999864

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=97.48  E-value=6.4e-05  Score=49.18  Aligned_cols=29  Identities=24%  Similarity=0.417  Sum_probs=23.9

Q ss_pred             CCCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           1 LRQFTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |..++..-|++.|.+|+|||||...+...
T Consensus         2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            2 MRSIPELRLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             CCCCCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred             CCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34455677999999999999999999853

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.48  E-value=7.9e-05  Score=50.62  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=20.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+|||||||...|...
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            457899999999999999998643

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=97.47  E-value=0.0001  Score=57.66  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=29.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ..++++.|+||+||||++..+...+...+.++.+.
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            45899999999999999999998887666655544

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.47  E-value=4.9e-05  Score=51.22  Aligned_cols=23  Identities=30%  Similarity=0.411  Sum_probs=20.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      +...|+++|.+||||||+.+.|.
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~   47 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLT   47 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            45689999999999999999886

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.47  E-value=9e-05  Score=59.61  Aligned_cols=27  Identities=33%  Similarity=0.445  Sum_probs=23.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+.-++|+|+||+|||++|+.|++.+.
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l~  226 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQII  226 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence            345689999999999999999999973

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.46  E-value=5.6e-05  Score=53.52  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .++.+.|++||||||+.+.|+-.
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999754

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.46  E-value=3.3e-05  Score=59.44  Aligned_cols=25  Identities=28%  Similarity=0.392  Sum_probs=22.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .-|+|+|+||+|||++|+.|++.+.
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            4689999999999999999998764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=97.45  E-value=9.6e-05  Score=48.37  Aligned_cols=28  Identities=25%  Similarity=0.126  Sum_probs=21.8

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..++..-|+++|.+|+||||+...+...
T Consensus         4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            4 SASRFIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             ---CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            3445677999999999999999998743

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=97.44  E-value=7.3e-05  Score=48.70  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=20.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ++.-|+++|.+||||||+...+..
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHc
Confidence            346799999999999999999974

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.44  E-value=8.4e-05  Score=55.31  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl~   53 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGLE   53 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcCC
Confidence            3589999999999999999998543

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.44  E-value=8.7e-05  Score=54.85  Aligned_cols=25  Identities=32%  Similarity=0.271  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGIY   53 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCCC
Confidence            3589999999999999999998543

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.44  E-value=8.8e-05  Score=54.93  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL~   78 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLLE   78 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcCC
Confidence            3579999999999999999998543

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.44  E-value=7.6e-05  Score=55.08  Aligned_cols=24  Identities=25%  Similarity=0.362  Sum_probs=21.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .++.+.|++||||||+.+.|+-.+
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl~   65 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGLE   65 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            579999999999999999998543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.43  E-value=0.00011  Score=49.01  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=21.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .+..-|+++|.+|+|||||...+...
T Consensus        26 ~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           26 SAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhC
Confidence            34567999999999999999999854

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=97.43  E-value=0.0001  Score=51.74  Aligned_cols=38  Identities=16%  Similarity=0.167  Sum_probs=32.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .+.+..+..|+||||+|..|+..+. .+.++.++..|..
T Consensus        29 vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~   66 (267)
T 3k9g_A           29 IITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ   66 (267)
T ss_dssp             EEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred             EEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            4455578899999999999999998 8999999988753

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=97.43  E-value=0.0001  Score=48.01  Aligned_cols=25  Identities=28%  Similarity=0.413  Sum_probs=21.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +++.-|+++|.+|||||||...+..
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHh
Confidence            4456799999999999999999974

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.43  E-value=7.7e-05  Score=50.00  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..|+++|++||||||+.+.|...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            56899999999999999999864

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.43  E-value=9.1e-05  Score=54.80  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGIY   53 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcCC
Confidence            3589999999999999999998543

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=97.43  E-value=0.0005  Score=49.62  Aligned_cols=25  Identities=12%  Similarity=0.193  Sum_probs=22.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ...++|+|+||+||||+|+.+++..
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~   42 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYV   42 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhC
Confidence            5689999999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=97.42  E-value=0.00012  Score=47.77  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+|||||||.+.+...
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999999864

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.42  E-value=0.0001  Score=48.35  Aligned_cols=25  Identities=28%  Similarity=0.440  Sum_probs=21.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +..-|+++|.||+|||||.+.|...
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3467999999999999999999753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=97.41  E-value=8.2e-05  Score=53.40  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3589999999999999999997543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.41  E-value=4.6e-05  Score=55.16  Aligned_cols=25  Identities=32%  Similarity=0.473  Sum_probs=21.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+..+
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCchHHHHHHHHHcCC
Confidence            3589999999999999999997654

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.40  E-value=0.0001  Score=54.71  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl~   61 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGLE   61 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3588999999999999999998543

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=97.40  E-value=0.00013  Score=47.60  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ++..|+++|.+||||||+...+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456799999999999999999974

>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...

Probab=97.40  E-value=4.9e-05  Score=55.57  Aligned_cols=30  Identities=30%  Similarity=0.209  Sum_probs=23.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ...+|.|-|+-||||||+++.|++++...+
T Consensus         3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g   32 (331)
T 1e2k_A            3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD   32 (331)
T ss_dssp             EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence            357899999999999999999999886544

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=97.40  E-value=0.00013  Score=48.42  Aligned_cols=25  Identities=24%  Similarity=0.236  Sum_probs=21.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ...-|+++|.+||||||+...|...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3457999999999999999999754

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.40  E-value=0.0015  Score=48.83  Aligned_cols=31  Identities=19%  Similarity=0.356  Sum_probs=25.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      .-+.+.|+||+||||+++.|++.+...+-+.
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v  205 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC  205 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHHHCTTS
T ss_pred             cEEEEecCCCCChhHHHHHHHHHHhhcCCCe
Confidence            4688999999999999999998775544333

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=97.39  E-value=0.00011  Score=47.40  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=21.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ...-|+++|.+||||||+.+.|...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcC
Confidence            3456899999999999999999854

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=97.39  E-value=0.0001  Score=54.59  Aligned_cols=27  Identities=22%  Similarity=0.284  Sum_probs=23.6

Q ss_pred             CCeEEEE--EccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVAL--VGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l--~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+..+++  +|+||+||||+++.+++.+.
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~   77 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS   77 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence            4568888  99999999999999998764

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.39  E-value=9.3e-05  Score=54.93  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl~   53 (372)
T 1g29_1           29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (372)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCcHHHHHHHHHHcCC
Confidence            3578999999999999999998543

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.38  E-value=0.00011  Score=60.00  Aligned_cols=37  Identities=24%  Similarity=0.193  Sum_probs=27.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++|+|+||+|||++|+.|++.+...+.+...+++.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~  625 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT  625 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence            4799999999999999999999884433333344443

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=97.38  E-value=0.00012  Score=47.54  Aligned_cols=24  Identities=38%  Similarity=0.443  Sum_probs=20.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .+.-|+++|.||+|||||.+.+..
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEEEECCCCccHHHHHHHHhc
Confidence            346799999999999999999873

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=97.38  E-value=0.00014  Score=48.02  Aligned_cols=25  Identities=32%  Similarity=0.449  Sum_probs=21.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .+..-|+++|.+|+||||+.+.+..
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~   38 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLAS   38 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhc
Confidence            4457899999999999999999863

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=97.38  E-value=4.9e-05  Score=55.50  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+++++|++||||||+.+.|+..+.
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~  196 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIP  196 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            5799999999999999999987653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.38  E-value=0.00011  Score=58.98  Aligned_cols=28  Identities=29%  Similarity=0.238  Sum_probs=24.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..++++|+||+||||+++.+++.+..
T Consensus       206 ~~~~vlL~G~~GtGKT~la~~la~~l~~  233 (758)
T 1r6b_X          206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ  233 (758)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence            4557899999999999999999998754

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.37  E-value=0.00011  Score=47.33  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=20.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.-|+++|.+||||||+...+...
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999999754

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=97.37  E-value=0.00011  Score=57.74  Aligned_cols=27  Identities=30%  Similarity=0.492  Sum_probs=23.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..++|.|+||+||||+|+.|+..+...
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            478999999999999999999987543

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=97.37  E-value=0.00019  Score=46.40  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ++.-|+++|.+||||||+...+..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            356799999999999999999974

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.36  E-value=0.0001  Score=48.31  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=21.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .++.-|+++|.+||||||+...+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            456789999999999999998886

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.36  E-value=0.00012  Score=54.65  Aligned_cols=25  Identities=32%  Similarity=0.420  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl~   71 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRLL   71 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3589999999999999999998543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.36  E-value=0.00013  Score=51.45  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=21.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +...|+++|.|||||||+.+.|...
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999743

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=97.36  E-value=9.1e-05  Score=51.86  Aligned_cols=43  Identities=21%  Similarity=0.188  Sum_probs=33.2

Q ss_pred             CCCCeEEEE-EccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           3 QFTPLVVAL-VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         3 ~~~~~~i~l-~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +.+..+|.+ .+..|+||||+|..|+..+...+.++.++..|..
T Consensus         3 ~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~   46 (257)
T 1wcv_1            3 RAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ   46 (257)
T ss_dssp             --CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred             CCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            334445555 5788999999999999999878899999888753

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=97.36  E-value=0.0002  Score=51.92  Aligned_cols=39  Identities=18%  Similarity=0.181  Sum_probs=35.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +.++|.++|-=|+||||++-.|+..|...|.++-++.+|
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D   85 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD   85 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            457999999999999999999999998889999999888

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=97.35  E-value=0.00013  Score=47.53  Aligned_cols=24  Identities=33%  Similarity=0.393  Sum_probs=21.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+||||||+...+...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999998754

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=97.35  E-value=0.00016  Score=47.91  Aligned_cols=26  Identities=31%  Similarity=0.346  Sum_probs=21.7

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++..-|+++|.+|||||||...+...
T Consensus        18 ~~~~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           18 GPELKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence            34467999999999999999888754

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=97.35  E-value=0.00013  Score=48.84  Aligned_cols=24  Identities=33%  Similarity=0.389  Sum_probs=21.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+|||||||...|...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            456999999999999999999854

>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1

Probab=97.35  E-value=6.7e-05  Score=55.04  Aligned_cols=31  Identities=26%  Similarity=0.219  Sum_probs=26.7

Q ss_pred             CCCeEEEEEccCCCChhHHH-HHHHHHHccCC
Q psy2713           4 FTPLVVALVGLPARGKTVLA-HKLSRYLTWTD   34 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla-~~l~~~l~~~~   34 (143)
                      ++..+|+|-|+-||||||++ +.|++.+...+
T Consensus        10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g   41 (341)
T 1osn_A           10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN   41 (341)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred             CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence            34579999999999999999 99999887554

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=97.34  E-value=0.00012  Score=52.95  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=22.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..+++++|+|||||||+|..++..
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999975

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.34  E-value=0.00062  Score=51.41  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=21.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.-|+++|.||||||||.+.|...
T Consensus       180 ~~kvaivG~~gvGKSTLln~l~g~  203 (439)
T 1mky_A          180 AIKVAIVGRPNVGKSTLFNAILNK  203 (439)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CceEEEECCCCCCHHHHHHHHhCC
Confidence            467999999999999999999743

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=97.34  E-value=0.00019  Score=54.48  Aligned_cols=28  Identities=25%  Similarity=0.244  Sum_probs=25.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .+++.|+|||||||++..+++.+...+.
T Consensus        47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~   74 (459)
T 3upu_A           47 HVTINGPAGTGATTLTKFIIEALISTGE   74 (459)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            8999999999999999999998866555

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.33  E-value=0.00011  Score=48.62  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=19.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .-|+++|.||||||||.+.+..
T Consensus         3 ~kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            3 MKLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999974

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.33  E-value=7.8e-05  Score=54.86  Aligned_cols=25  Identities=16%  Similarity=0.307  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl~   50 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGFH   50 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCccHHHHHHHHHcCC
Confidence            3589999999999999999998443

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.33  E-value=7.4e-05  Score=57.66  Aligned_cols=26  Identities=23%  Similarity=0.377  Sum_probs=22.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ...++++|++||||||+.+.|...+.
T Consensus       260 g~~i~I~GptGSGKTTlL~aL~~~i~  285 (511)
T 2oap_1          260 KFSAIVVGETASGKTTTLNAIMMFIP  285 (511)
T ss_dssp             TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            45799999999999999999987653

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.33  E-value=0.00027  Score=56.76  Aligned_cols=25  Identities=28%  Similarity=0.274  Sum_probs=23.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..++|+|+||+|||++|+.+++.++
T Consensus       489 ~~~ll~G~~GtGKT~la~~la~~l~  513 (758)
T 1r6b_X          489 GSFLFAGPTGVGKTEVTVQLSKALG  513 (758)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhc
Confidence            3699999999999999999999984

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=97.33  E-value=0.00014  Score=47.68  Aligned_cols=25  Identities=24%  Similarity=0.222  Sum_probs=21.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +..-|+++|.+|||||||.+.|...
T Consensus        17 ~~~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           17 ALHKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CceEEEEECCCCCCHHHHHHHHhhC
Confidence            3457999999999999999999853

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=97.32  E-value=0.00011  Score=47.37  Aligned_cols=24  Identities=25%  Similarity=0.429  Sum_probs=21.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ++.-|+++|.+|+||||+...+..
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            5 CQFKLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHc
Confidence            456799999999999999999975

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=97.30  E-value=0.00028  Score=47.95  Aligned_cols=38  Identities=21%  Similarity=0.202  Sum_probs=31.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .+.+..+..|+||||+|..|+..+...| ++.++..|..
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q   39 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN   39 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence            3456678999999999999999998888 8888877743

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=97.30  E-value=0.00014  Score=47.34  Aligned_cols=24  Identities=25%  Similarity=0.290  Sum_probs=20.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+||||||+...+...
T Consensus         7 ~~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            7 LFKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcC
Confidence            456999999999999999999743

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.30  E-value=0.00013  Score=47.02  Aligned_cols=21  Identities=38%  Similarity=0.580  Sum_probs=18.8

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .-|+++|.||+||||+.+.+.
T Consensus         3 ~ki~~vG~~~~GKSsli~~l~   23 (166)
T 3q72_A            3 YKVLLLGAPGVGKSALARIFG   23 (166)
T ss_dssp             CEEEEEESTTSSHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHc
Confidence            458999999999999999885

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=97.30  E-value=0.00017  Score=52.08  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=22.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .++++.|++|+||||+++.+++.+.
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~   55 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELN   55 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcC
Confidence            3899999999999999999998875

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.30  E-value=0.00014  Score=46.95  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=18.9

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .-|+++|.+||||||+...+.
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~   23 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFG   23 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            358999999999999999986

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=97.29  E-value=0.00021  Score=48.15  Aligned_cols=26  Identities=23%  Similarity=0.092  Sum_probs=21.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +...-|+++|.+|+|||||...+...
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcC
Confidence            34467999999999999999999753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=97.29  E-value=0.00016  Score=46.63  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ..-|+++|.+||||||+.+.+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHc
Confidence            45689999999999999999974

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=97.29  E-value=0.00016  Score=47.27  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=20.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.-|+++|.+||||||+...+...
T Consensus        12 ~~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           12 NAKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            356999999999999999999753

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=97.29  E-value=0.00016  Score=46.69  Aligned_cols=23  Identities=22%  Similarity=0.367  Sum_probs=20.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +.-|+++|.+||||||+...+..
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHh
Confidence            35689999999999999999974

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.29  E-value=0.00016  Score=52.05  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=21.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|. .+
T Consensus       165 G~i~~l~G~sG~GKSTLln~l~-~~  188 (302)
T 2yv5_A          165 GFICILAGPSGVGKSSILSRLT-GE  188 (302)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred             CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence            3578999999999999999998 54

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=97.29  E-value=0.00016  Score=47.56  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=21.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++.-|+++|.+||||||+...|...
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhC
Confidence            3467999999999999999999854

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=97.29  E-value=0.0002  Score=47.02  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=21.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+||||||+...+...
T Consensus        18 ~~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           18 TYKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            357999999999999999999854

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.29  E-value=0.00015  Score=53.62  Aligned_cols=24  Identities=21%  Similarity=0.256  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .++.++|+|||||||+.+.|.-.+
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~  239 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQ  239 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred             CEEEEECCCCccHHHHHHHHhccc
Confidence            578999999999999999998443

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=97.28  E-value=0.00018  Score=48.03  Aligned_cols=24  Identities=25%  Similarity=0.223  Sum_probs=20.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+|||||||...+...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            457999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=97.28  E-value=0.00017  Score=46.57  Aligned_cols=24  Identities=29%  Similarity=0.362  Sum_probs=21.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.-|+++|.+||||||+.+.+...
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            6 SFKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            457999999999999999999854

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.28  E-value=0.00027  Score=54.62  Aligned_cols=36  Identities=17%  Similarity=0.327  Sum_probs=27.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      ..++++.|+|||||||+++.++..+...+-++..+.
T Consensus       281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~  316 (525)
T 1tf7_A          281 DSIILATGATGTGKTLLVSRFVENACANKERAILFA  316 (525)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence            358999999999999999999976654444444443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=97.27  E-value=0.00016  Score=46.62  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+||||||+.+.+...
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            456999999999999999999754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=97.27  E-value=0.00024  Score=47.35  Aligned_cols=24  Identities=38%  Similarity=0.504  Sum_probs=21.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .+..-|+++|.+||||||+...+.
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHH
Confidence            345679999999999999999885

>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A

Probab=97.27  E-value=0.00017  Score=51.40  Aligned_cols=38  Identities=21%  Similarity=0.227  Sum_probs=32.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus         6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~   43 (286)
T 2xj4_A            6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL   43 (286)
T ss_dssp             EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            44555678899999999999999988888898888876

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=97.26  E-value=0.00019  Score=47.55  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+|+|||||...+...
T Consensus        21 ~~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           21 EVNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhC
Confidence            357999999999999999998754

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.26  E-value=0.00049  Score=51.99  Aligned_cols=21  Identities=43%  Similarity=0.654  Sum_probs=19.2

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .|+++|.|++|||||...|..
T Consensus         3 ~v~ivG~pnvGKStL~nrl~~   23 (439)
T 1mky_A            3 TVLIVGRPNVGKSTLFNKLVK   23 (439)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999973

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.26  E-value=0.00017  Score=49.81  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=20.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +.-|+++|.+|+||||+.+.|..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHcC
Confidence            45799999999999999999974

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00013  Score=55.62  Aligned_cols=25  Identities=36%  Similarity=0.449  Sum_probs=21.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+++.|+..+
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcc
Confidence            3578999999999999999998654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.26  E-value=0.00016  Score=51.97  Aligned_cols=25  Identities=36%  Similarity=0.384  Sum_probs=21.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .+...|.++|.||+|||||.+.|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g   30 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLG   30 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHC
Confidence            3456899999999999999999974

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=97.25  E-value=0.00022  Score=47.63  Aligned_cols=25  Identities=24%  Similarity=0.364  Sum_probs=21.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +..-|+++|.+|+|||||...+...
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhC
Confidence            3467999999999999999999743

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.25  E-value=0.0002  Score=47.20  Aligned_cols=25  Identities=28%  Similarity=0.371  Sum_probs=21.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ...-|+++|.+|+|||||.+.+...
T Consensus         6 ~~~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            6 VKCKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEEECCCCCCHHHHHHHHhcC
Confidence            3467899999999999999999854

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.25  E-value=8.1e-05  Score=54.88  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl~   55 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGLD   55 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3589999999999999999998543

>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}

Probab=97.25  E-value=0.00046  Score=49.36  Aligned_cols=39  Identities=13%  Similarity=0.191  Sum_probs=32.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      .+.+..+.+|+||||+|..|+..+...+.++.++..|..
T Consensus        94 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~  132 (286)
T 3la6_A           94 VLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR  132 (286)
T ss_dssp             EEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred             EEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence            444555568999999999999999888899988888754

>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*

Probab=97.25  E-value=0.00042  Score=46.89  Aligned_cols=38  Identities=16%  Similarity=0.122  Sum_probs=27.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      .+..+.+++|++||||||-..+....+...+.++.++.
T Consensus        18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k   55 (195)
T 1w4r_A           18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK   55 (195)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence            34579999999999999666665555555567777775

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=97.25  E-value=0.0002  Score=46.97  Aligned_cols=25  Identities=28%  Similarity=0.250  Sum_probs=21.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ++..-|+++|.+|+|||||...+..
T Consensus         3 ~~~~~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            3 PQAIKCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEEECCCCCCHHHHHHHHHc
Confidence            3456799999999999999999874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.23  E-value=0.00023  Score=49.79  Aligned_cols=24  Identities=29%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ++..|+++|.+||||||+...|..
T Consensus        21 ~~~~I~lvG~~g~GKStl~n~l~~   44 (260)
T 2xtp_A           21 SELRIILVGKTGTGKSAAGNSILR   44 (260)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHhC
Confidence            346799999999999999999974

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=97.23  E-value=0.0002  Score=46.54  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.+||||||+.+.|...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56999999999999999999854

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=97.23  E-value=0.00018  Score=46.92  Aligned_cols=21  Identities=19%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .-|+++|.+||||||+...|.
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~   30 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFA   30 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHh
Confidence            569999999999999999986

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.23  E-value=0.00021  Score=53.73  Aligned_cols=24  Identities=29%  Similarity=0.372  Sum_probs=21.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.++.++|++||||||+.+.|.-.
T Consensus        69 ~~~valvG~nGaGKSTLln~L~Gl   92 (413)
T 1tq4_A           69 VLNVAVTGETGSGKSSFINTLRGI   92 (413)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhCC
Confidence            458999999999999999999853

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.22  E-value=0.0002  Score=54.09  Aligned_cols=21  Identities=29%  Similarity=0.330  Sum_probs=19.3

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.++|++|||||||.+.|...
T Consensus        45 vaLvG~nGaGKSTLln~L~G~   65 (427)
T 2qag_B           45 ILCVGETGLGKSTLMDTLFNT   65 (427)
T ss_dssp             EEEECSTTSSSHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhCc
Confidence            899999999999999999743

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.22  E-value=0.00017  Score=48.53  Aligned_cols=25  Identities=32%  Similarity=0.246  Sum_probs=21.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .+.-|+++|.+|||||||...+...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~   48 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKD   48 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcC
Confidence            3457999999999999999999753

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=97.22  E-value=0.00023  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ..-|+++|.+|||||||...+..
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHc
Confidence            35799999999999999999874

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=97.21  E-value=0.00022  Score=51.42  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=22.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+++++|++|+||||+++.+++.++
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~   56 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERP   56 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcC
Confidence            5799999999999999999998753

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.21  E-value=0.00017  Score=58.75  Aligned_cols=26  Identities=27%  Similarity=0.408  Sum_probs=22.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +..++++|+||+||||+++.+++.+.
T Consensus       191 ~~~vlL~G~pG~GKT~la~~la~~l~  216 (854)
T 1qvr_A          191 KNNPVLIGEPGVGKTAIVEGLAQRIV  216 (854)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence            34578999999999999999999873

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.21  E-value=0.00024  Score=47.66  Aligned_cols=23  Identities=35%  Similarity=0.473  Sum_probs=20.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      ++.-|+++|.+||||||+.+.+.
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~   46 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLK   46 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            34568999999999999999986

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.21  E-value=0.0003  Score=46.45  Aligned_cols=25  Identities=32%  Similarity=0.392  Sum_probs=21.8

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .+..-|+++|.+||||||+...+..
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3467899999999999999999973

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.21  E-value=0.00065  Score=51.53  Aligned_cols=40  Identities=23%  Similarity=0.361  Sum_probs=27.8

Q ss_pred             cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecC
Q psy2713          87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ  127 (143)
Q Consensus        87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~  127 (143)
                      .....+++|++....+.-..+.. .+.+.+.+++++---+|
T Consensus       278 ad~~llviD~~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~D  317 (456)
T 4dcu_A          278 SEVVAVVLDGEEGIIEQDKRIAG-YAHEAGKAVVIVVNKWD  317 (456)
T ss_dssp             CSEEEEEEETTTCCCHHHHHHHH-HHHHTTCEEEEEEECGG
T ss_pred             CCEEEEEEeCCCCcCHHHHHHHH-HHHHcCCCEEEEEEChh
Confidence            34566888988765556667777 77778888877655444

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=97.20  E-value=0.0002  Score=47.18  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.9

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      -|+++|.+||||||+...+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            478999999999999999874

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=97.20  E-value=0.00023  Score=46.82  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=20.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +..-|+++|.+|||||||...+..
T Consensus        20 ~~~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           20 QEHKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhc
Confidence            345799999999999999999974

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.20  E-value=0.00024  Score=47.27  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +.-|++.|.+||||||+.+.+..
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45789999999999999999985

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=97.20  E-value=0.00033  Score=51.99  Aligned_cols=35  Identities=14%  Similarity=0.118  Sum_probs=28.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      ..++++|++||||||+++.+...+...+..+.++.
T Consensus        36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D   70 (392)
T 4ag6_A           36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID   70 (392)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence            46789999999999999999977766666555554

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.20  E-value=0.00025  Score=45.58  Aligned_cols=22  Identities=41%  Similarity=0.465  Sum_probs=19.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      -|++.|.+|+||||+...+...
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999999754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=97.20  E-value=0.00025  Score=46.69  Aligned_cols=22  Identities=18%  Similarity=0.221  Sum_probs=20.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .-|+++|.+|||||||...|..
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            5799999999999999999985

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.20  E-value=0.00024  Score=47.91  Aligned_cols=25  Identities=36%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +..-|+++|.+|+|||||...+...
T Consensus         6 ~~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            6 SQRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999999854

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=97.20  E-value=0.00024  Score=46.30  Aligned_cols=24  Identities=33%  Similarity=0.360  Sum_probs=21.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.-|+++|.+|+||||+...+...
T Consensus        10 ~~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           10 AFKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhC
Confidence            457999999999999999999753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=97.19  E-value=0.00023  Score=46.77  Aligned_cols=23  Identities=22%  Similarity=0.413  Sum_probs=20.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.+||||||+.+.+...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            56999999999999999999754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.19  E-value=0.00025  Score=50.27  Aligned_cols=25  Identities=36%  Similarity=0.636  Sum_probs=22.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      |++..|+++|.|||||||+.+.|..
T Consensus         1 M~~~~I~lvG~~n~GKSTLin~l~g   25 (274)
T 3i8s_A            1 MKKLTIGLIGNPNSGKTTLFNQLTG   25 (274)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhC
Confidence            4567899999999999999999964

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.18  E-value=0.00023  Score=51.24  Aligned_cols=24  Identities=21%  Similarity=0.336  Sum_probs=20.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..++.+.|+|||||||+.+.|+..
T Consensus       169 geiv~l~G~sG~GKSTll~~l~g~  192 (301)
T 1u0l_A          169 GKISTMAGLSGVGKSSLLNAINPG  192 (301)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CCeEEEECCCCCcHHHHHHHhccc
Confidence            357899999999999999999744

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=97.18  E-value=0.00027  Score=47.30  Aligned_cols=24  Identities=29%  Similarity=0.324  Sum_probs=21.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+|||||||...|...
T Consensus         8 ~~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            8 LLKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcC
Confidence            457999999999999999999754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=97.17  E-value=0.00028  Score=46.43  Aligned_cols=25  Identities=28%  Similarity=0.417  Sum_probs=21.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .++.-|+++|.+||||||+...+..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~   40 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNG   40 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhc
Confidence            3457799999999999999999874

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.17  E-value=0.00031  Score=45.39  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=21.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.+.+++|+.||||||+...|.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5688999999999999999998655

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.17  E-value=0.00036  Score=46.29  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ...-|+++|.+|||||||...|..
T Consensus         7 ~~~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            7 NDYRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCcHHHHHHHHHc
Confidence            346799999999999999999975

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=97.16  E-value=0.00025  Score=47.04  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +.-|+++|.+|||||||...+..
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            45799999999999999999863

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=97.15  E-value=0.00028  Score=46.74  Aligned_cols=23  Identities=35%  Similarity=0.520  Sum_probs=20.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.+|+|||||.+.|...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999753

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.14  E-value=0.00026  Score=54.73  Aligned_cols=21  Identities=19%  Similarity=0.308  Sum_probs=19.1

Q ss_pred             CeEEEEEccCCCChhHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKL   26 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l   26 (143)
                      ..+++++|++||||||+++.+
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHH
Confidence            468999999999999999995

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=97.14  E-value=0.00035  Score=54.21  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=22.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ...+|.++|++|+||||+|+.+++
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHH
Confidence            457999999999999999999996

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.13  E-value=0.013  Score=39.55  Aligned_cols=125  Identities=10%  Similarity=0.062  Sum_probs=67.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh----hhhhhhhhc-------CCCCccccCchhhhhHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA----YRRKHLELY-------NSHDIFRVDNTEGYNIRQLSA   74 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~   74 (143)
                      +-+|++.+.+|.||||.|-.++-+.-..|.++.++....    +.+......       .+.. |.....+... ....+
T Consensus        28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~g-f~~~~~~~~~-~~~~a  105 (196)
T 1g5t_A           28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATG-FTWETQNREA-DTAAC  105 (196)
T ss_dssp             CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTT-CCCCGGGHHH-HHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccc-cccCCCCcHH-HHHHH
Confidence            347888888899999999999977766688888873221    111111100       0111 2111111111 11223


Q ss_pred             HHHHHHHHHHHh-cCCeEEEEeCCchh----HHHHHHHHHHHHh-hcCCEEEEEEeecCcHHHHH
Q psy2713          75 REAQEDATKWLK-NDGEVAIIDGTTAT----MEKRKQIHDYFAR-KMGFKVLFVELIVQDEEILE  133 (143)
Q Consensus        75 ~~~~~~~~~~l~-~~~~~vi~d~~~~~----~~~r~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~  133 (143)
                      ...+..+.+.+. ..-+.+|+|..+.-    .-..+.+.+ .+. ++.-.-+++-...+.++++.
T Consensus       106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~-~l~~Rp~~~~vIlTGr~ap~~l~e  169 (196)
T 1g5t_A          106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVIS-ALNARPGHQTVIITGRGCHRDILD  169 (196)
T ss_dssp             HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHH-HHHTSCTTCEEEEECSSCCHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHH-HHHhCcCCCEEEEECCCCcHHHHH
Confidence            445555666663 33578999998642    111233444 443 33333456777777777665

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=97.13  E-value=0.00045  Score=49.20  Aligned_cols=40  Identities=15%  Similarity=0.027  Sum_probs=32.4

Q ss_pred             eEEEEE--ccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           7 LVVALV--GLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         7 ~~i~l~--G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      .+.+..  +..|+||||+|..|+..+...+.++.++..|...
T Consensus        36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~   77 (298)
T 2oze_A           36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA   77 (298)
T ss_dssp             CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            344444  5999999999999999998888999998887543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=97.13  E-value=0.00036  Score=47.76  Aligned_cols=24  Identities=29%  Similarity=0.451  Sum_probs=21.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ++.-|+++|.+|+|||||...|..
T Consensus        28 ~~~kI~vvG~~~vGKSsLin~l~~   51 (228)
T 2qu8_A           28 HKKTIILSGAPNVGKSSFMNIVSR   51 (228)
T ss_dssp             TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            356899999999999999999864

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=97.13  E-value=0.00033  Score=54.51  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ...+|.++|++|+||||+|..++.
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHh
Confidence            457899999999999999999974

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=97.13  E-value=0.00019  Score=51.96  Aligned_cols=23  Identities=30%  Similarity=0.247  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.||+||||+|..|.++
T Consensus       148 ~gvli~G~sG~GKStlal~l~~~  170 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECALDLINK  170 (312)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46999999999999999998754

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=97.12  E-value=0.00032  Score=51.86  Aligned_cols=38  Identities=13%  Similarity=0.042  Sum_probs=31.2

Q ss_pred             CeEEEE-EccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVAL-VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l-~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +.+|.+ .|..|+||||+|..|+..+...+.++.++..|
T Consensus       143 ~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D  181 (373)
T 3fkq_A          143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE  181 (373)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred             ceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence            455555 46999999999999999887778888888876

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=97.12  E-value=0.00037  Score=46.86  Aligned_cols=25  Identities=28%  Similarity=0.282  Sum_probs=21.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ++.-|+++|.+||||||+...+...
T Consensus        29 ~~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           29 QAIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHhC
Confidence            4567999999999999999998753

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.11  E-value=0.00026  Score=49.78  Aligned_cols=25  Identities=40%  Similarity=0.507  Sum_probs=21.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ++..-|+++|.|||||||+...|..
T Consensus         3 ~~~~kI~lvG~~nvGKTsL~n~l~g   27 (258)
T 3a1s_A            3 LHMVKVALAGCPNVGKTSLFNALTG   27 (258)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHC
Confidence            3456799999999999999999974

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=97.11  E-value=0.00026  Score=51.35  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=21.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-++++|.||+||||+|..|.++
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc
Confidence            56999999999999999999876

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=97.11  E-value=0.00031  Score=46.43  Aligned_cols=23  Identities=22%  Similarity=0.346  Sum_probs=20.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.+|+|||||...|...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999754

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=97.11  E-value=0.00023  Score=47.61  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .-|+++|.+|||||||.+.+.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999999884

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=97.10  E-value=0.00034  Score=46.40  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=20.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.+|+|||||...+...
T Consensus        24 ~ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           24 FKLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHhcC
Confidence            46999999999999999999854

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=97.10  E-value=0.00056  Score=53.49  Aligned_cols=41  Identities=17%  Similarity=0.154  Sum_probs=35.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++..++++.|.+|+||||+|..++..+...|.++.+++.|.
T Consensus       325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp  365 (589)
T 1ihu_A          325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP  365 (589)
T ss_dssp             TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCC
Confidence            34568899999999999999999999988888888887774

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.09  E-value=0.00031  Score=54.97  Aligned_cols=25  Identities=36%  Similarity=0.581  Sum_probs=22.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|+..+
T Consensus       369 G~~~~ivG~sGsGKSTll~~l~g~~  393 (582)
T 3b5x_A          369 GKTVALVGRSGSGKSTIANLFTRFY  393 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3579999999999999999998665

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=97.09  E-value=0.0003  Score=46.99  Aligned_cols=22  Identities=18%  Similarity=0.406  Sum_probs=19.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .-|+++|.+|||||||...|..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~   30 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYAD   30 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            5699999999999999999874

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=97.09  E-value=0.00025  Score=46.88  Aligned_cols=24  Identities=21%  Similarity=0.379  Sum_probs=21.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.-|+++|.+|+|||||...|...
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcC
Confidence            357999999999999999999754

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=97.09  E-value=0.00031  Score=46.51  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.+|+|||||...|...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46999999999999999999853

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=97.09  E-value=0.00035  Score=47.32  Aligned_cols=23  Identities=35%  Similarity=0.358  Sum_probs=20.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +.-|+++|.+|+|||||...+..
T Consensus        34 ~~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           34 SVKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHC
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            35799999999999999999973

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=97.08  E-value=0.00033  Score=46.52  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.9

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.+|+|||||...|...
T Consensus        23 ~~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           23 ELKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred             ceEEEEECcCCCCHHHHHHHHhcC
Confidence            356999999999999999999754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=97.08  E-value=0.00036  Score=46.20  Aligned_cols=23  Identities=30%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.+|+|||||...+...
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            46999999999999999999753

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=97.08  E-value=0.00038  Score=46.16  Aligned_cols=23  Identities=17%  Similarity=0.296  Sum_probs=20.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+++|.+|+|||||...+...
T Consensus        22 ~ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           22 FKYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46999999999999999999753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.08  E-value=0.00034  Score=46.44  Aligned_cols=24  Identities=38%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.-|+++|.+|+||||+...+...
T Consensus        23 ~~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           23 ALKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eeEEEEECcCCCCHHHHHHHHhcC
Confidence            357999999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	143
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	2e-21
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	2e-05
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	3e-05
d1okkd2	207	c.37.1.10 (D:97-303) GTPase domain of the signal r	0.002
d1vmaa2	213	c.37.1.10 (A:82-294) GTPase domain of the signal r	0.004

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 83.9 bits (206), Expect = 2e-21
 Identities = 50/133 (37%), Positives = 74/133 (55%)

Query: 6   PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
           P ++ +VGLPARGKT ++ KL+RYL +    ++ F+V  YRR  ++ Y S + F  DN E
Sbjct: 2   PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61

Query: 66  GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELI 125
           G  IR+  A  A  D  K+L  +G    +   T T  +R+ +   F  + G+K  FVE I
Sbjct: 62  GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121

Query: 126 VQDEEILEHNIKQ 138
             D E++  NI Q
Sbjct: 122 CVDPEVIAANIVQ 134

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 10/139 (7%)

Query: 8   VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR---KHLELYNSHDIFRVDNT 64
           VV + G+P  G T  +      L       K+ S  +      K   L +  D  R  + 
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62

Query: 65  EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQI--HDYFARKMGFKVLFV 122
           E     Q  A     +             +D  +     +  +     +        L +
Sbjct: 63  ETQKRIQKMAGRKIAEM-----AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLII 117

Query: 123 ELIVQDEEILEHNIKQSMC 141
            +    +EIL   +     
Sbjct: 118 VVETTGDEILMRRMSDETR 136

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 40.0 bits (92), Expect = 3e-05
 Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 5/138 (3%)

Query: 8   VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS----VSAYRRKHLELYNSHDIFRVDN 63
           +  + G+P  GK+ +  K+   L      +K+ +    + A   K     +  ++ ++  
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62

Query: 64  TEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
            +   ++  +A+   E+A +                T          +        +   
Sbjct: 63  EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121

Query: 124 LIVQDEEILEHNIKQSMC 141
           L    + IL    + +  
Sbjct: 122 LEADPKIILSRQKRDTTR 139

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

 Score = 34.7 bits (79), Expect = 0.002
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 10/129 (7%)

Query: 6   PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
             VV +VG+   GKT    KL RY    +   KV   +    +        +  +  +  
Sbjct: 6   GRVVLVVGVNGVGKTTTIAKLGRYY--QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP 63

Query: 66  GYNIRQ-LSAREAQEDATKWLKNDGEVAIIDGTTAT-------MEKRKQIHDYFARKMGF 117
                +         DA + +K  G   +   T          ME+ K++    A+    
Sbjct: 64  VIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPE 123

Query: 118 KVLFVELIV 126
           +   V L++
Sbjct: 124 EPKEVWLVL 132

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

 Score = 33.6 bits (76), Expect = 0.004
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%)

Query: 6   PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR-------RKHLELYNSHDI 58
           P V+ +VG+   GKT    KL++          + +   +R       +   E   +  I
Sbjct: 11  PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 70

Query: 59  FRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFK 118
              +  +   +   +   A       +  D     +      ME+ +++H    +K+   
Sbjct: 71  SHSEGADPAAVAFDAVAHALARNKDVVIID-TAGRLHTKKNLMEELRKVHRVVKKKIPDA 129

Query: 119 VLFVELIV 126
                L++
Sbjct: 130 PHETLLVI 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	143
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.93
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.87
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.86
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.77
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.75
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.72
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.71
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.7
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	99.66
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.61
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.54
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	99.54
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	99.53
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.5
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	99.5
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.5
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	99.48
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	99.48
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.47
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	99.47
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.46
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	99.46
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	99.44
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	99.43
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	99.42
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	99.35
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	99.31
d2qy9a2	211	GTPase domain of the signal recognition particle r	99.28
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	99.28
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	99.28
d1vmaa2	213	GTPase domain of the signal recognition particle r	99.27
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	99.25
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	99.24
d1j8yf2	211	GTPase domain of the signal sequence recognition p	99.19
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	99.17
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	99.17
d1okkd2	207	GTPase domain of the signal recognition particle r	99.14
d1ls1a2	207	GTPase domain of the signal sequence recognition p	99.13
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	99.12
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	99.07
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	99.06
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.06
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	99.02
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	99.01
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.97
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.95
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	98.92
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	98.89
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	98.86
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.84
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	98.81
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	98.79
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.72
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	98.72
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.69
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	98.69
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.68
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	98.67
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	98.67
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	98.66
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.55
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	98.5
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.48
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	98.48
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	98.48
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.47
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.43
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.43
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.4
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.38
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.38
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	98.35
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	98.35
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.34
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	98.31
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	98.3
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	98.3
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.29
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.27
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.26
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	98.21
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.2
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	98.2
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.19
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	98.18
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.16
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	98.15
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	98.15
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	98.13
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.12
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	98.12
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.11
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.08
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	98.07
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	98.06
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.06
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	98.06
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	98.05
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	98.01
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.98
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	97.96
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	97.89
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	97.88
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.88
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.86
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.83
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.82
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	97.81
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	97.77
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	97.76
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	97.74
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.74
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.74
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	97.73
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.73
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.73
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.71
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.69
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.69
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.68
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	97.68
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.68
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.67
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.67
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	97.65
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.65
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.64
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.64
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.62
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	97.61
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.6
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.58
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.58
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	97.57
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.57
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.57
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	97.55
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	97.54
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.54
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.53
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.53
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	97.52
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.52
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	97.51
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	97.51
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	97.5
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.5
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.49
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	97.49
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	97.47
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	97.47
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.47
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.45
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	97.4
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.39
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.39
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.38
d1tuea_	205	Replication protein E1 helicase domain {Human papi	97.38
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.38
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	97.37
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.37
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	97.35
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	97.34
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	97.34
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.33
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.33
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.33
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.32
d2fh5b1	207	Signal recognition particle receptor beta-subunit	97.32
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.32
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	97.32
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	97.31
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.31
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	97.31
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.3
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	97.29
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	97.28
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	97.27
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	97.24
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	97.22
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	97.22
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.21
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.21
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.2
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	97.19
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	97.19
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	97.18
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.18
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.17
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	97.17
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	97.16
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	97.15
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.15
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	97.15
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	97.14
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.14
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	97.11
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	97.11
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.11
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	97.1
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	97.1
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.09
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.07
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	97.07
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	97.07
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	97.06
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	97.05
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.04
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.04
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.02
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	97.01
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	97.0
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	96.98
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.98
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.97
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	96.96
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.94
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	96.9
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	96.9
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.9
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.87
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	96.86
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.78
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.7
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.7
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.68
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	96.67
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	96.67
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	96.61
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.52
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	96.51
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.48
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	96.45
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.36
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	96.35
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	96.34
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.33
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.33
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	96.3
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.3
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	96.24
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	96.24
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	96.22
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	96.18
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	96.01
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	96.0
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	95.97
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	95.97
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.91
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	95.68
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.67
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	95.67
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	95.63
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.58
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	95.5
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	95.41
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	95.31
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	95.27
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	95.21
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	95.17
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.08
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	95.04
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	95.01
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	94.97
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	94.94
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	94.92
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	94.9
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	94.88
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	94.61
d1e8ca3	234	UDP-N-acetylmuramyl tripeptide synthetase MurE {Es	94.58
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.55
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	94.51
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.49
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	94.22
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	94.18
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	94.02
d1p3da3	215	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.94
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	93.83
d2jfga3	204	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	93.52
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	93.48
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	92.64
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.47
d1o5za2	296	Folylpolyglutamate synthetase {Thermotoga maritima	91.77
d2gc6a2	296	Folylpolyglutamate synthetase {Lactobacillus casei	91.25
d1w36b1	485	Exodeoxyribonuclease V beta chain (RecB), N-termin	90.53
d1s1ma2	266	CTP synthase PyrG, N-terminal domain {Escherichia	90.23
d2vo1a1	273	CTP synthase PyrG, N-terminal domain {Human (Homo	87.76
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.63
d1vcoa2	272	CTP synthase PyrG, N-terminal domain {Thermus ther	87.61
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	87.18
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	86.48
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	85.69
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	85.06
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	83.97
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	83.92
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	83.57
d1hv8a1	208	Putative DEAD box RNA helicase {Archaeon Methanoco	83.31
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	83.09
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	82.57
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	82.53
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	82.47
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	82.0
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	81.95
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	81.8
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	81.61
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	81.43
d1c4oa1	408	Nucleotide excision repair enzyme UvrB {Thermus th	81.41
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	81.3
d1rifa_	282	DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]	81.28
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	80.75
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	80.24

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2.1e-24  Score=146.71  Aligned_cols=135  Identities=41%  Similarity=0.694  Sum_probs=108.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .|.+|+|+|+|||||||+|++|++++++.++++.+++.|.++..........+....................+..+...
T Consensus         1 ~p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (213)
T d1bifa1           1 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKF   80 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHH
Confidence            38899999999999999999999999999999999999999887654332223333333333334444455556666666


Q ss_pred             H-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 L-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      + .+.+.++|+|+++...+.|..+.+ +++..+..++++++.|++++++++|+.+.+
T Consensus        81 ~~~~~~~~vi~d~~~~~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (213)
T d1bifa1          81 LSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVESICVDPEVIAANIVQVK  136 (213)
T ss_dssp             HHTTCCSEEEEESCCCSHHHHHHHHH-HHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred             HHhcCCCEEEeecCCccHHHHHHHHH-HHHhcCCeEEEEEeeccHHHHHHHhHHHHh
Confidence            5 566889999999999999999999 999999999999999999999999987654

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3e-22  Score=132.96  Aligned_cols=105  Identities=18%  Similarity=0.233  Sum_probs=82.7

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .+.|.+|+|+|+|||||||+|+.+++.+++     ..++.|+++..                          ..+...+.
T Consensus        11 ~~~p~liil~G~pGsGKST~a~~l~~~~~~-----~~i~~D~~~~~--------------------------~~~~~~~~   59 (172)
T d1yj5a2          11 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGY-----VHVNRDTLGSW--------------------------QRCVSSCQ   59 (172)
T ss_dssp             CSSCCEEEEECCTTSSHHHHHHHHTGGGTC-----EEEEHHHHCSH--------------------------HHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCC-----EEEchHHHHHH--------------------------HHHHHHHH
Confidence            456889999999999999999999776543     45667654321                          01112222


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ..+. .|..||+|+++.+.+.|..|.+ +++++|+.+.+|++.+|.+++.+||.+|..
T Consensus        60 ~~l~-~g~~vIiD~t~~~~~~R~~~~~-~a~~~~~~~~~v~l~~~~e~~~~Rn~~R~~  115 (172)
T d1yj5a2          60 AALR-QGKRVVIDNTNPDVPSRARYIQ-CAKDAGVPCRCFNFCATIEQARHNNRFREM  115 (172)
T ss_dssp             HHHH-TTCCEEEESCCCSHHHHHHHHH-HHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred             HHHH-CCCCceeeCcCCCHHHHHHHHH-HHHhcCCCEEEEEeCCCHHHHHHHHHHhcc
Confidence            2333 4789999999999999999999 999999999999999999999999999964

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.86  E-value=7.6e-21  Score=122.96  Aligned_cols=126  Identities=20%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      |+.+|+|+|+|||||||+|+.|++..    .....++.|+++........ .+... ...........+   ....+...
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~----~~~~~~~~d~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~---~~~~~~~~   71 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEE-RDEYK-YTKKKEGIVTGM---QFDTAKSI   71 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCC-GGGCC-CCHHHHHHHHHH---HHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhC----CCCEEechHHHHHHHhcccc-hhhhh-hhhhhhHHHHHH---HHHHHHHH
Confidence            45689999999999999999997663    34567788888766433111 11011 111111111111   12222223


Q ss_pred             Hh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          85 LK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        85 l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +.  ..+..+|+|+++..++.+..+.+ +++++++++.+|++.+|.+++++|+.+|..
T Consensus        72 ~~~~~~~~~vi~d~~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~  128 (152)
T d1ly1a_          72 LYGGDSVKGVIISDTNLNPERRLAWET-FAKEYGWKVEHKVFDVPWTELVKRNSKRGT  128 (152)
T ss_dssp             HTSCSSCCEEEECSCCCSHHHHHHHHH-HHHHHTCEEEEEECCCCHHHHHHHHTTCGG
T ss_pred             HHhhccCCCcccccccCCHHHHHHHHH-hhhhhccchhhhhcCCCHHHHHHHHHccCC
Confidence            32  23457999999999999999999 999999999999999999999999998853

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.77  E-value=1.6e-18  Score=118.01  Aligned_cols=126  Identities=19%  Similarity=0.173  Sum_probs=91.1

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQED   80 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
                      +.+++.+|+|+|+|||||||+|+.|++.+. ..++.+..+..|.++.....   ..+ |+.+.      +...+ ..+..
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~---~l~-ys~~~------r~~~~-~r~~~   88 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK---DLG-FSEAD------RNENI-RRIAE   88 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT---TCC-SSHHH------HHHHH-HHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcC---CCC-CChhH------HHHHH-HHHHH
Confidence            456789999999999999999999998874 34677778888887765321   111 32211      11111 22344


Q ss_pred             HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHh------hcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFAR------KMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      +...+...+..+|+++.....+.|+...+ ++.      +.+..++.|++.||.++|.+|+.++.
T Consensus        89 ~a~~~~~~g~~viv~~i~~~~~~R~~~r~-i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~k~~  152 (208)
T d1m7ga_          89 VAKLFADSNSIAITSFISPYRKDRDTARQ-LHEVATPGEETGLPFVEVYVDVPVEVAEQRDPKGL  152 (208)
T ss_dssp             HHHHHHHTTCEEEEECCCCCHHHHHHHHH-HHHCCCTTCSCCCCEEEEEEECCHHHHHTSCTTCH
T ss_pred             HHHHHhccCCceeeecccccHHHHHHHHH-HhhhhccchhcCCceEEEEEcCCHHHHHHhhcccc
Confidence            45556567889999999999999998887 653      34667888999999999999987653

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.75  E-value=6.5e-18  Score=110.90  Aligned_cols=131  Identities=15%  Similarity=0.095  Sum_probs=75.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC---CCCccccCchhhhhHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN---SHDIFRVDNTEGYNIRQLSAREAQED   80 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (143)
                      |++++|+|+|+|||||||+|+.|++.++...+   .+..|.+.........   ....+..................+..
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l~~~~~---~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPWL---AFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAE   77 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSSSCEE---EEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCCeE---EeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHH
Confidence            56789999999999999999999999875432   3344555443211110   01111111100000111111233344


Q ss_pred             HHHHHhcCCeEEEEeCCchhHHH-HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          81 ATKWLKNDGEVAIIDGTTATMEK-RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~~~~-r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ....+...+..++++........ +..+.. ..  .+..+.+|++.||.+++.+|+..|..
T Consensus        78 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~--~~~~~~~v~l~~~~e~~~~R~~~R~~  135 (178)
T d1qhxa_          78 GVVAMARAGARIIIDDVFLGGAAAQERWRS-FV--GDLDVLWVGVRCDGAVAEGRETARGD  135 (178)
T ss_dssp             HHHHHHHTTCEEEEEECCTTTHHHHHHHHH-HH--TTCCEEEEEEECCHHHHHHHHHHTSS
T ss_pred             HHHHHHhhccceEEeeeecchHHHHHHHHH-hh--cCCceeecccCCCHHHHHHHHHhcCC
Confidence            44444445667777776544433 333343 33  25777788899999999999988753

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.72  E-value=7.3e-18  Score=113.05  Aligned_cols=129  Identities=15%  Similarity=0.170  Sum_probs=83.1

Q ss_pred             CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHH
Q psy2713           1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREA   77 (143)
Q Consensus         1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   77 (143)
                      |.+.+|.+|++.|+|||||||+|+.|+++++..++     +.+++.+......  .+...   ............   ..
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i-----~~g~~~r~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~   70 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHL-----SAGDLLRQEQQSG--SKDGEMIATMIKNGEIVPSI---VT   70 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEE-----EHHHHHHHHHHTT--CTTHHHHHHHHHTTCCCCHH---HH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCceE-----chhhHHHHHhhhh--hhhhhhhhhHhhhccccchH---HH
Confidence            67889999999999999999999999999976544     5555544322211  11000   000000000000   01


Q ss_pred             HHHHHHHH-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          78 QEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        78 ~~~~~~~l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ...+.... ......+++|+.+.+.++...+.+ .......+.++|.+.||++++.+|...|..
T Consensus        71 ~~~~~~~~~~~~~~~~i~dg~p~~~~~~~~l~~-~~~~~~~~~~vi~l~~~~~~~~~R~~~~~~  133 (194)
T d1qf9a_          71 VKLLKNAIDANQGKNFLVDGFPRNEENNNSWEE-NMKDFVDTKFVLFFDCPEEVMTQRLLKRGE  133 (194)
T ss_dssp             HHHHHHHHHTSTTCCEEEETCCCSHHHHHHHHH-HHTTTCEEEEEEEEECCHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhcCCeEEEecchhhhhHHHHHh-hhhhcccccEEEEeecchHHHHHHHHhhcc
Confidence            11111112 233456999999999998888887 777666677889999999999999887754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.71  E-value=2.8e-16  Score=102.54  Aligned_cols=124  Identities=15%  Similarity=0.077  Sum_probs=77.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      |+++|+|+|+|||||||+|+.|++.++.    ..+++.|.++......   .. ...+.....   ... ...+......
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~~----~~~~~~d~~~~~~~~~---~~-~~~~~~~~~---~~~-~~~~~~~~~~   68 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLDN----SAYIEGDIINHMVVGG---YR-PPWESDELL---ALT-WKNITDLTVN   68 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSSS----EEEEEHHHHHTTCCTT---CC-CGGGCHHHH---HHH-HHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCC----CEEEehHHHHHHHhcc---cc-chhHHHHHH---HHH-HHHHHHHHHH
Confidence            3578999999999999999999999754    2345667665543211   11 111111111   111 1122222222


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhh-cCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARK-MGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      ....+..+|+|........+..+.. .... .+..+.++.+.|+.+++.+|+..|...
T Consensus        69 ~~~~~~~~iid~~~~~~~~~~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~  125 (176)
T d2bdta1          69 FLLAQNDVVLDYIAFPDEAEALAQT-VQAKVDDVEIRFIILWTNREELLRRDALRKKD  125 (176)
T ss_dssp             HHHTTCEEEEESCCCHHHHHHHHHH-HHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-
T ss_pred             HHhcCCCcccccccccHHHHHHHHH-HHHhcCCCceEEEeccccHHHHHHHHHhCCCc
Confidence            3234778999998887776665554 4443 356777888999999999999998653

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=9.7e-17  Score=104.98  Aligned_cols=122  Identities=15%  Similarity=0.122  Sum_probs=75.1

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      -+++.+++|+|+|||||||+|+.|++++++.+++.+.+..+........   ..++..    ..   .... ...+....
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~---~~~~~~----~~---~~~~-~~~~~~~~   71 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMAS---GEPLND----DD---RKPW-LQALNDAA   71 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHT---TCCCCH----HH---HHHH-HHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhcc---Ccceeh----hh---hHHH-HHHHHHHH
Confidence            3568899999999999999999999999876654444433322111111   111111    10   1111 11122222


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ......+..++.+..+.....++     .++..+.++.++++.||.+++.+|..+|..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~l~~~~e~~~~Rl~~R~~  124 (171)
T d1knqa_          72 FAMQRTNKVSLIVCSALKKHYRD-----LLREGNPNLSFIYLKGDFDVIESRLKARKG  124 (171)
T ss_dssp             HHHHHHCSEEEEECCCCSHHHHH-----HHHTTCTTEEEEEEECCHHHHHHHHHTSTT
T ss_pred             HHHHhccCceEeeccchHHHHHH-----HHHHhCCCceEEeecCCHHHHHHHHHhCcC
Confidence            22222356777888777666554     444567778889999999999999988853

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=5.3e-16  Score=103.30  Aligned_cols=125  Identities=18%  Similarity=0.189  Sum_probs=79.4

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      ++++++|+|+|+|||||||+|+.|++++++.+.+++.+..|.++......   .+ +..  ..    ....... .....
T Consensus        16 ~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~---~~-~~~--~~----~~~~~~~-~~~~~   84 (195)
T d1x6va3          16 GFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKN---LG-FSP--ED----REENVRR-IAEVA   84 (195)
T ss_dssp             SCCCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTT---CC-SSH--HH----HHHHHHH-HHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccc---cc-hhh--hH----HHHHHHH-HHHHH
Confidence            45678999999999999999999999999999999999888766543221   11 111  11    1111111 22233


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ......+..++.+..+.....+..+.. ..+.....+..+.+.++..+..+++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  140 (195)
T d1x6va3          85 KLFADAGLVCITSFISPYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDVKGL  140 (195)
T ss_dssp             HHHHHTTCEEEEECCCCCHHHHHHHHH-HHHTTTCCEEEEEECC-------------
T ss_pred             HHHHhcCCccccccccchHHHHHHHHH-HHhccccccccccchhheeeehhhccchh
Confidence            334445788999999999988888888 88777777777888888888777776553

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.61  E-value=4.3e-15  Score=97.24  Aligned_cols=122  Identities=13%  Similarity=0.143  Sum_probs=73.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK   83 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (143)
                      |...+|+|+|+|||||||+|+.|++.++..   ...++.|.++....... ..+ +.....+   ... ...........
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~lg~~---~~~~~~d~~~~~~~~~~-~~~-~~~~~~~---~~~-~~~~~~~~~~~   72 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANLPGVP---KVHFHSDDLWGYIKHGR-IDP-WLPQSHQ---QNR-MIMQIAADVAG   72 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTCSSSC---EEEECTTHHHHTCCSSC-CCT-TSSSHHH---HHH-HHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCC---EEEecHHHHHHHHhcCC-ccc-ccchhhh---HHH-HHHHHHHHHHH
Confidence            567899999999999999999999887543   33455666655432211 111 1111111   111 11122222333


Q ss_pred             HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .+...+..+|+|...... .+..+.     ..+..+.++++.|+.+++.+|..+|..
T Consensus        73 ~~~~~~~~vi~~~~~~~~-~~~~~~-----~~~~~~~~i~l~~~~e~~~~R~~~R~~  123 (176)
T d1zp6a1          73 RYAKEGYFVILDGVVRPD-WLPAFT-----ALARPLHYIVLRTTAAEAIERCLDRGG  123 (176)
T ss_dssp             HHHHTSCEEEECSCCCTT-TTHHHH-----TTCSCEEEEEEECCHHHHHHHHHTTCT
T ss_pred             HHHhcCCCeEecccccHH-HHHHHH-----hcccccccccCCCCHHHHHHHHHhCCC
Confidence            333446788888876433 222222     345667788899999999999988864

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.54  E-value=6.5e-14  Score=93.60  Aligned_cols=126  Identities=13%  Similarity=0.119  Sum_probs=73.6

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-------ccccCchhhhhHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-------IFRVDNTEGYNIRQLSA   74 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~   74 (143)
                      .+++..+|++.|+|||||||+|+.|+++++..++     +.++..+...... +..       ++............   
T Consensus         4 ~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~i-----s~gdl~R~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~---   74 (196)
T d1ukza_           4 SPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHL-----SAGDLLRAEQGRA-GSQYGELIKNCIKEGQIVPQEITL---   74 (196)
T ss_dssp             CTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEE-----EHHHHHHHHHHST-TCSCHHHHHHHHHTTCCCCHHHHH---
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEE-----ehhHHHHHHhhhc-ccHHHHHHHHhhhccccccchhHH---
Confidence            4566779999999999999999999999876554     5555443322110 000       01110000000000   


Q ss_pred             HHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          75 REAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        75 ~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      ......+..........+++|+...+..+...+.. ..   .....++.+.++++++.+|...|.+
T Consensus        75 ~~~~~~~~~~~~~~~~~~vl~g~p~~~~q~~~~~~-~~---~~~~~~i~l~~~~e~~~~R~~~~~~  136 (196)
T d1ukza_          75 ALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DI---VESKFILFFDCPEDIMLERLLERGK  136 (196)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHH-HT---CCCSEEEEEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccCCCceeeeccchhHHHHHHHHH-hc---cccceeeccCCCHHHHHHHHHhccc
Confidence            11112222222334568999999988776666555 32   2334567778999999999877653

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.54  E-value=6.3e-14  Score=91.62  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=37.3

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +.....+|+|+|+|||||||+|+.|+++|+..+++.+.+...+..+
T Consensus         2 ~~~~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~   47 (183)
T d1m8pa3           2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR   47 (183)
T ss_dssp             TTTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhh
Confidence            4566799999999999999999999999988887766665444333

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-13  Score=91.82  Aligned_cols=129  Identities=14%  Similarity=0.113  Sum_probs=75.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHH-HHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQ-EDA   81 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~   81 (143)
                      |.+|++.|+|||||||+|+.|+++++..++     +.++..+...... ..+...   .....+..+........+ ..+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i-----~~g~llR~~~~~~-~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~   74 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHL-----SAGELLRDERKNP-DSQYGELIEKYIKEGKIVPVEITISLLKREM   74 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEE-----EHHHHHHHHHHCT-TSTTHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceE-----cHHHHHHHHHHhh-hhhHHHHHHHHHhcCCccccchhhHHHHHhh
Confidence            789999999999999999999999986554     5555544322110 011000   000000000001111111 111


Q ss_pred             HHHH--hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          82 TKWL--KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        82 ~~~l--~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                      ....  ......+++|+...+..+...+.. ..........++.+.++.+.+.+|...|...
T Consensus        75 ~~~~~~~~~~~~~~~~g~pr~~~~~~~l~~-~~~~~~~~~~vi~l~~~~~~~~~r~~~R~~~  135 (194)
T d1teva_          75 DQTMAANAQKNKFLIDGFPRNQDNLQGWNK-TMDGKADVSFVLFFDCNNEICIERCLERGKS  135 (194)
T ss_dssp             HHHHHHCTTCCEEEEESCCCSHHHHHHHHH-HHTTTCEEEEEEEEECCHHHHHHHHHHHHHT
T ss_pred             cccchhhhcccceeeccchhhHHHHHHHhh-hhhccccccEEEeecCcchhheeecccCCCc
Confidence            1111  123567899999999887777766 5554444445677889999999998888643

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.50  E-value=1.1e-13  Score=96.26  Aligned_cols=129  Identities=15%  Similarity=0.178  Sum_probs=81.7

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHH-HHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAR-EAQEDA   81 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   81 (143)
                      ...|..|+|.|||||||||+|+.|+..++.   +...++.|.++.......   ..............+.... ......
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~---~~~~i~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDNDTFKQQHPNFD---ELVKLYEKDVVKHVTPYSNRMTEAII  102 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTT---CCEEECTHHHHTTSTTHH---HHHHHHGGGCHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhc---ceEEEecHHHHHHhccCc---ccchhhhHHHHHHHHhhccchHHHHH
Confidence            346889999999999999999999998754   345678888765421100   0000000011111111111 111222


Q ss_pred             HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ...+. .+...++|.++........+.. .+...++.+.+..+.++...+..++..|.
T Consensus       103 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~R~  158 (273)
T d1gvnb_         103 SRLSD-QGYNLVIEGTGRTTDVPIQTAT-MLQAKGYETKMYVMAVPKINSYLGTIERY  158 (273)
T ss_dssp             HHHHH-HTCCEEECCCCCCSHHHHHHHH-HHHTTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred             HHHHh-hCCCCcccccccchHHHHHHHH-HHHHcCCeEEEEecCCCchhhhhHHhcCC
Confidence            22222 2456788888888888888888 88888999988888899999888887763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.50  E-value=1.3e-14  Score=96.65  Aligned_cols=121  Identities=14%  Similarity=0.164  Sum_probs=66.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQE   79 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
                      .|+.|++.|+|||||||+|+.|+++++..++++     +++.+.......     ..+++....    .+..........
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~-----~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~   72 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA-----GDLLRAEIAAGSENGKRAKEFMEKGQ----LVPDEIVVNMVK   72 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH-----HHHHHHHHHHTCHHHHHHHHHHHTTC----CCCHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHCCcEEeh-----hHHHHHhhhcccHHHHHHHHHHhcCC----cccceeehhhhh
Confidence            577899999999999999999999999887744     433332111000     000000000    000000000011


Q ss_pred             HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                      ............+|+|+.+...++...+.. .   ...+..+|.+.++.+++.+|...|
T Consensus        73 ~~~~~~~~~~~~~vid~~~~~~~q~~~l~~-~---~~~p~~~i~L~~~~e~l~~R~~~~  127 (189)
T d1zaka1          73 ERLRQPDAQENGWLLDGYPRSYSQAMALET-L---EIRPDTFILLDVPDELLVERVVFD  127 (189)
T ss_dssp             HHHHSHHHHHTCEEEESCCCSHHHHHHHHT-T---TCCCSEEEEEECCHHHHHHHHTTT
T ss_pred             hHhhhcccccCcEEeeccchhhHHHhhhhh-c---ccccchheeechhhhhhhhhcccc
Confidence            111111111235789999888776555443 2   123335677889999999997554

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=3e-14  Score=94.19  Aligned_cols=121  Identities=17%  Similarity=0.193  Sum_probs=71.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHH-HHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAR-EAQED   80 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~-~~~~~   80 (143)
                      +-|+|.|+|||||||+|+.|+++++..++     +.++..+.......  +   .++++.....    ...... .....
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~g~~~i-----~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~----~~~~~~~~~~~~   73 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERFHAAHL-----ATGDMLRSQIAKGTQLGLEAKKIMDQGGLV----SDDIMVNMIKDE   73 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHCCEEE-----EHHHHHHHHHHTTCHHHHHHHHHHHTTCCC----CHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCceE-----eccccceeccccCChHHHHHHHHHhhhccc----ccchhHHHHHHH
Confidence            34778899999999999999999986544     55554443211100  0   0000000000    000000 11111


Q ss_pred             HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCE-EEEEEeecCcHHHHHHhhhh
Q psy2713          81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFK-VLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~r~~~r  138 (143)
                      +... ......+|+|+.+.+..+.+.+.+ ++...+.+ ..+|++.++.+++.+|...|
T Consensus        74 l~~~-~~~~~g~i~dg~p~~~~q~~~~~~-~l~~~~~~~~~vi~L~~~~~~~~~R~~~~  130 (180)
T d1akya1          74 LTNN-PACKNGFILDGFPRTIPQAEKLDQ-MLKEQGTPLEKAIELKVDDELLVARITNA  130 (180)
T ss_dssp             HHHC-GGGGSCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHSH
T ss_pred             HhcC-ccccCCEeccCccchhhhHHHHHh-hHHHcCCCceeeeecccccchhhhccccc
Confidence            1111 122456899999999988888888 77776654 46788899999999996544

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.48  E-value=5e-14  Score=93.09  Aligned_cols=120  Identities=23%  Similarity=0.296  Sum_probs=74.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .|++.|+|||||||+|+.|++.++..++     +.++..+........     ..+++...    .....+....+.   
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i-----~~~~l~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~l~---   69 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQI-----STGELFRRNIEEGTKLGVEAKRYLDAGD----LVPSDLTNELVD---   69 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEE-----EHHHHHHHHHHTTCHHHHHHHHHHHHTC----CCCHHHHHHHHH---
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceE-----chHHHHHHHHhhhhhhHHHHHHHHHhhh----hhhhHHHHHHHH---
Confidence            5888999999999999999999986654     555544332211000     00000000    000011111111   


Q ss_pred             HHH--hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWL--KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l--~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      +.+  ......+++|+......+...+.+ .....+... +++.+.|+++++.+|...|..
T Consensus        70 ~~~~~~~~~~~~i~d~~p~~~~~~~~l~~-~~~~~~~~~~~vi~l~~~~e~l~~R~~~r~r  129 (181)
T d2cdna1          70 DRLNNPDAANGFILDGYPRSVEQAKALHE-MLERRGTDIDAVLEFRVSEEVLLERLKGRGR  129 (181)
T ss_dssp             HHTTSGGGTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHHHCC
T ss_pred             HHhhCccccccEEecccccchhHHHHHHH-HHHhcCCCccEEEeccCCHHHHHhhhccccc
Confidence            222  223457999999998888888887 666655543 678889999999999988764

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=1e-13  Score=91.34  Aligned_cols=121  Identities=16%  Similarity=0.143  Sum_probs=67.5

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCC-CccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSH-DIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      -|+|.|+|||||||+|+.|+++++..++     +.+++.+......... ..+......+...........+...... .
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~~~~i-----~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~-~   75 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYGIPQI-----STGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQ-E   75 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEE-----EHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTS-G
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcee-----chhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhcc-c
Confidence            5788999999999999999999986554     5555554432211000 0000000000000111111111111111 2


Q ss_pred             cCCeEEEEeCCchhHHHHHHHHHHHHhhcC-CEEEEEEeecCcHHHHHHhhhhh
Q psy2713          87 NDGEVAIIDGTTATMEKRKQIHDYFARKMG-FKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .....+++|+.+.+..+...+.+     .+ .+-++|.+.||.+++.+|...|.
T Consensus        76 ~~~~g~i~~g~pr~~~~~~~~~~-----~~~~~~~vi~L~~~~~~l~~R~~~~~  124 (179)
T d1e4va1          76 DCRNGFLLDGFPRTIPQADAMKE-----AGINVDYVLEFDVPDELIVDRIVKDD  124 (179)
T ss_dssp             GGGGCEEEESCCCSHHHHHHHHH-----TTCCCSEEEEEECCHHHHHHHHHTTC
T ss_pred             ccccceeecccccchHHhhhhhh-----ccCCceEEEEeccchhhhhhhhcccc
Confidence            22456899999988765444443     33 33457888999999999987763

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=99.47  E-value=2.1e-14  Score=95.62  Aligned_cols=127  Identities=15%  Similarity=0.155  Sum_probs=71.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--CCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--SHDIFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .-|+|.|+|||||||+|+.|+++++..++     +.++..+.......  +.. .......+..+........+...+..
T Consensus         4 ~riil~G~pGSGKsT~a~~La~~~g~~~i-----~~gdllr~~~~~~~~~g~~-~~~~~~~g~~~~~~~v~~~~~~~l~~   77 (190)
T d1ak2a1           4 VRAVLLGPPGAGKGTQAPKLAKNFCVCHL-----ATGDMLRAMVASGSELGKK-LKATMDAGKLVSDEMVLELIEKNLET   77 (190)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEE-----EHHHHHHHHHHHTCHHHHH-HHHHHHTTCCCCHHHHHHHHHHHHTS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCeEE-----eHHHHHHHHHhccCcccch-hhhhhccCCccccceeeeeehhhhcc
Confidence            34556899999999999999999986554     55444333111000  000 00000000000001111111111111


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcC-CEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMG-FKVLFVELIVQDEEILEHNIKQSMC  141 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~r~~~r~~~  141 (143)
                       ......+|+|+.+....+...+.+ .....+ ...+.+.+.|++..+.+|...|...
T Consensus        78 -~~~~~g~ii~g~pr~~~qa~~l~~-~~~~~~~~~~~~~~l~v~~~~~~~r~~~r~~~  133 (190)
T d1ak2a1          78 -PPCKNGFLLDGFPRTVRQAEMLDD-LMEKRKEKLDSVIEFSIPDSLLIRRITGRLIH  133 (190)
T ss_dssp             -GGGTTCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTCEEC
T ss_pred             -ccccCceeecccccchhHHHHHHH-HhhhccccccccccccchHHHHHhhhccCCCC
Confidence             122456899999988888887777 555544 3446677789999999999888653

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=99.47  E-value=9.9e-14  Score=91.17  Aligned_cols=127  Identities=12%  Similarity=0.035  Sum_probs=71.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      ++|+|.|+|||||||+++.|+++|+..+.+...++.+++............................ ..........+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~   80 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRI-QKMAGRKIAEMA   80 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHH-HHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHH-HHHHHHHHHHHh
Confidence            5899999999999999999999999999999888887765554322111111111000000000000 111111122222


Q ss_pred             cCCeEEEEeCCchhHHHH-------HHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          87 NDGEVAIIDGTTATMEKR-------KQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        87 ~~~~~vi~d~~~~~~~~r-------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                       .+..+++|.........       ..+.. .    ..+..++.+.++.+++.+|..+|..
T Consensus        81 -~~~~vl~d~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~i~l~~~~~~~~~R~~~~~~  135 (190)
T d1khta_          81 -KESPVAVDTHSTVSTPKGYLPGLPSWVLN-E----LNPDLIIVVETTGDEILMRRMSDET  135 (190)
T ss_dssp             -TTSCEEEECCSEEEETTEEEESSCHHHHH-H----HCCSEEEEEECCHHHHHHHHHTSSS
T ss_pred             -CCCeEEECCcccchHHHHHHHhhhhhhhh-h----ccccceeeecCCHHHHHHHHHHhcc
Confidence             35678888765322110       11111 1    1334456778999999999877643

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.46  E-value=4.8e-14  Score=92.40  Aligned_cols=112  Identities=16%  Similarity=0.199  Sum_probs=58.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK   86 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   86 (143)
                      ..|+|+|+|||||||+|+.|+++|++.++     +.|.+.+...+. ...+++...+   ....    ......++....
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg~~~i-----d~D~~ie~~~g~-~i~ei~~~~g---~~~~----~~~~~~~l~~~~   69 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALGYEFV-----DTDIFMQHTSGM-TVADVVAAEG---WPGF----RRRESEALQAVA   69 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHTCEEE-----EHHHHHHHHHCS-CHHHHHHHHH---HHHH----HHHHHHHHHHHC
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEE-----ehhhhhhhhhhh-hhhhhhcccc---hHHH----HHHHHHHHHhhc
Confidence            34667899999999999999999987665     445544432210 0011221111   1111    111222222222


Q ss_pred             cCCeEEEEeC-CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          87 NDGEVAIIDG-TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        87 ~~~~~vi~d~-~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      .....+.+.+ .....+.++.+.     +++   .+|++.||.+++.+|-..|.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~l~-----~~~---~~v~L~~~~e~l~~Rl~~~~  115 (170)
T d1e6ca_          70 TPNRVVATGGGMVLLEQNRQFMR-----AHG---TVVYLFAPAEELALRLQASL  115 (170)
T ss_dssp             CSSEEEECCTTGGGSHHHHHHHH-----HHS---EEEEEECCHHHHHHHHHHHH
T ss_pred             cccceecccccchhhhHHHHhhh-----ccc---eeEEEecCchhHHHHHhhcc
Confidence            2233333322 334444444433     333   25677899999999966554

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=99.46  E-value=2.5e-13  Score=88.53  Aligned_cols=117  Identities=14%  Similarity=0.107  Sum_probs=63.2

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      +++++.|+++|+|||||||+|+.|+++++.    ..+++.+.........   ............  ...........+.
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~----~~~~~~~~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~   72 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDG----FQHLEVGKLVKENHFY---TEYDTELDTHII--EEKDEDRLLDFME   72 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTT----EEEEEHHHHHHHTTCS---CC------CCCC--CHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCC----CcEEeHHHHHHHHhhh---hhHHHhhcccch--HHHHHHHHHHHHH
Confidence            567889999999999999999999999753    2334555544332110   010100000000  0011111222222


Q ss_pred             HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713          83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM  140 (143)
Q Consensus        83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~  140 (143)
                      .... .+..+++|.....          ++.. .....+|++.||.+++.+|..+|..
T Consensus        73 ~~i~-~~~~~~~~~~~~~----------~~~~-~~~~~vI~L~~~~e~l~~Rl~~R~~  118 (174)
T d1y63a_          73 PIMV-SRGNHVVDYHSSE----------LFPE-RWFHMVVVLHTSTEVLFERLTKRQY  118 (174)
T ss_dssp             HHHT-SSSEEEEECSCCT----------TSCG-GGCSEEEEEECCHHHHHHHHHHTTC
T ss_pred             hhhh-hcccccccHHHHH----------HHHH-hcCceEEEEECCHHHHHHHHHhCCC
Confidence            2223 3456777765442          2211 1223456788999999999988864

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=1.5e-13  Score=91.79  Aligned_cols=122  Identities=15%  Similarity=0.171  Sum_probs=70.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQE   79 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~   79 (143)
                      ++.+|+|.|+|||||||+|+.|+++++..++     +.++..+.......  +   ..+.....    .....+....+.
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~g~~~i-----s~g~llr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~   77 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKYGYTHL-----STGDLLRAEVSSGSARGKMLSEIMEKGQ----LVPLETVLDMLR   77 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHTCCEEE-----EHHHHHHHHHHHTCHHHHHHHHHHTTTC----CCCHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeeE-----eccHHHHHHHHHhHhhhhhhHHHHhhcc----CCchheeeeehh
Confidence            5789999999999999999999999876554     55554443222110  0   00000000    000111111111


Q ss_pred             HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713          80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS  139 (143)
Q Consensus        80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~  139 (143)
                      ..+.........+|+|+.+.+..+.+.+.. .+.   .+...+.+.++.+++.+|...+.
T Consensus        78 ~~l~~~~~~~~g~ildg~pr~~~qa~~~~~-~~~---~~~~~~~~~~~~~~~~~r~~~~~  133 (194)
T d3adka_          78 DAMVAKVDTSKGFLIDGYPREVKQGEEFER-KIG---QPTLLLYVDAGPETMTKRLLKRG  133 (194)
T ss_dssp             HHHHTTTTTCSCEEEESCCSSHHHHHHHHH-HTC---CCSEEEEEECCHHHHHHHHHHHH
T ss_pred             hhhhhcccccccceeeeccchhHHHHHHHH-HhC---CccchhccccchhhhHhHhhhhc
Confidence            111111223556999999999887777766 443   33455667789999998876553

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=99.43  E-value=1.8e-13  Score=90.31  Aligned_cols=42  Identities=17%  Similarity=0.304  Sum_probs=36.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ++|+++|+|||||||+++.|+++|+..+.+...++.++....
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~~~d~~~~   43 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLA   43 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCcchH
Confidence            589999999999999999999999999998888887665433

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=99.42  E-value=2.6e-13  Score=90.48  Aligned_cols=121  Identities=15%  Similarity=0.117  Sum_probs=66.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-ccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-IFRVDNTEGYNIRQLSAREAQEDATKW   84 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (143)
                      .+-|+|.|+|||||||+|+.|+++++..+     ++.+++.+.......... .......................... 
T Consensus         6 ~mrIiliG~PGSGKtT~a~~La~~~g~~~-----is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~-   79 (189)
T d2ak3a1           6 LLRAAIMGAPGSGKGTVSSRITKHFELKH-----LSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELK-   79 (189)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHBCCEE-----EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHCCeE-----EcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhh-
Confidence            35677889999999999999999987654     466655544322110000 00000000000001111111221111 


Q ss_pred             HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                       ......+|+|+.+.+..+.+.+.+ .+    -...+|.+.|+++.+.+|...|
T Consensus        80 -~~~~~~~ildGfPr~~~q~~~l~~-~~----~~~~vi~L~v~~~~l~~R~~~r  127 (189)
T d2ak3a1          80 -NLTQYNWLLDGFPRTLPQAEALDR-AY----QIDTVINLNVPFEVIKQRLTDR  127 (189)
T ss_dssp             -HHTTSCEEEESCCCSHHHHHHHHT-TC----CCCEEEEEECCHHHHHHHHTGS
T ss_pred             -hhhhcCcccccccchhhHHHHhhh-cC----cceEEEEEeccchhhhhhcccc
Confidence             223456899999998876555443 21    1235678889999999887655

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=99.35  E-value=1.8e-11  Score=80.61  Aligned_cols=118  Identities=17%  Similarity=0.236  Sum_probs=69.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .|++.|+|||||||+|+.|+++++..++     +.+++.+........     .++++.    +..+.....   ...+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~i-----s~gdllr~~~~~~~~~g~~i~~~~~~----g~~~~d~~~---~~~~~   69 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHI-----STGDMFRAAIQEGTELGVKAKSFMDQ----GALVPDEVT---IGIVR   69 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEE-----EHHHHHHHHHHHTCHHHHHHHHHHHH----TCCCCHHHH---HHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcee-----eHHHHHHHhhhcCCchHHHHHHHHHc----CCcccCcch---hHHHH
Confidence            4889999999999999999999987655     555544332111100     000000    000000000   11111


Q ss_pred             HHH--hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhh
Q psy2713          83 KWL--KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        83 ~~l--~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r  138 (143)
                      ..+  ......+++|+.+.+..+...+.+ .+...+..+ ..+.+.++.+.+.+|...+
T Consensus        70 ~~~~~~~~~~~~vl~g~p~~~~~~~~l~~-~~~~~~~~i~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1s3ga1          70 ERLSKSDCDNGFLLDGFPRTVPQAEALDQ-LLADMGRKIEHVLNIQVEKEELIARLTAD  127 (182)
T ss_dssp             HHHTSSTTSSCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             HhhcccccccceeeeccccchhHHHHHHH-HhhcCCCeeeeccchhhhhhhhhhhhhcc
Confidence            112  122456899999999888888877 666665543 5566778988888885443

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.31  E-value=4.1e-11  Score=78.53  Aligned_cols=118  Identities=15%  Similarity=0.203  Sum_probs=67.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQEDAT   82 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (143)
                      .|++.|+|||||||+|+.|+++++..++     +.+++.+.......  +   .+++....    .+...   .....+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~~~~~i-----~~~~ll~~~~~~~~~~~~~i~~~~~~~~----~~~~~---~~~~~~~   69 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAYGIPHI-----STGDMFRAAMKEGTPLGLQAKQYMDRGD----LVPDE---VTIGIVR   69 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEE-----EHHHHHHHHHHHTCHHHHHHHHHHHHTC----CCCHH---HHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcee-----chhHHHHHhhccCChhhHHHHHHHHcCC----eeccc---hHHHHHH
Confidence            4889999999999999999999987655     55554433211000  0   00000000    00000   0111111


Q ss_pred             HHH--hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhh
Q psy2713          83 KWL--KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        83 ~~l--~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r  138 (143)
                      +..  ......+++++..........+.. .....+... .++.+.++.+.+.+|...|
T Consensus        70 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~e~~~~R~~~~  127 (182)
T d1zina1          70 ERLSKDDCQNGFLLDGFPRTVAQAEALET-MLADIGRKLDYVIHIDVRQDVLMERLTAD  127 (182)
T ss_dssp             HHHTSGGGTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHTT
T ss_pred             HHhhchhhhcCcccccccchhHHHHHHHH-hhhccCCceeeeeccccccchhhhccccc
Confidence            111  222346888888887776666666 555554444 6677889999999986644

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=2.1e-11  Score=82.25  Aligned_cols=92  Identities=20%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccCchhhhhHHHHHHH
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVDNTEGYNIRQLSAR   75 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~   75 (143)
                      ...+|.+|+|+|++||||||.+.+||.++...+.++.++..|.||....+      ...+.+++.....+..       .
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~d~-------~   77 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS-------A   77 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTTCCEECCSTTCCH-------H
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcCCcccccccCCCH-------H
Confidence            35568999999999999999999999999888899999999999887543      2334554432211110       1


Q ss_pred             HHHHHHHHHH-hcCCeEEEEeCCchh
Q psy2713          76 EAQEDATKWL-KNDGEVAIIDGTTAT  100 (143)
Q Consensus        76 ~~~~~~~~~l-~~~~~~vi~d~~~~~  100 (143)
                      ..+.+..+.. ......+++|+....
T Consensus        78 ~~l~~~~~~a~~~~~d~ilIDTaGr~  103 (211)
T d2qy9a2          78 SVIFDAIQAAKARNIDVLIADTAGRL  103 (211)
T ss_dssp             HHHHHHHHHHHHTTCSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHcCCCEEEeccCCCc
Confidence            1222222322 234578999998743

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.28  E-value=1.4e-10  Score=77.95  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=30.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .++|++.|++||||||+++.|+++|...++...++
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~   36 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVF   36 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEE
Confidence            46899999999999999999999998888766554

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=4.1e-12  Score=82.58  Aligned_cols=31  Identities=32%  Similarity=0.543  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      |. |+++|+|||||||+|+.|+++|++.++++
T Consensus         2 p~-IvliG~~G~GKSTig~~La~~l~~~fiD~   32 (165)
T d2iyva1           2 PK-AVLVGLPGSGKSTIGRRLAKALGVGLLDT   32 (165)
T ss_dssp             CS-EEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred             Cc-EEEECCCCCCHHHHHHHHHHHhCCCeEee
Confidence            44 45569999999999999999998776543

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=1.2e-11  Score=83.66  Aligned_cols=50  Identities=22%  Similarity=0.365  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE   51 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~   51 (143)
                      .+.+|.+|+|+|++||||||.+.+||.++...+.++.+++.|.||....+
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~e   56 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIE   56 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhH
Confidence            56789999999999999999999999999888899999999999887543

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=2.4e-11  Score=77.73  Aligned_cols=29  Identities=24%  Similarity=0.295  Sum_probs=25.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ++.|+|+|+|||||||+|+.|+++|+..+
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~~~~   30 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLNMEF   30 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            34688999999999999999999987654

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.24  E-value=3.9e-12  Score=82.51  Aligned_cols=29  Identities=28%  Similarity=0.430  Sum_probs=25.4

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKS   37 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~   37 (143)
                      |+++|+|||||||+|+.|++.|++.++++
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~   31 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDS   31 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEec
Confidence            78889999999999999999998766543

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=99.19  E-value=2.1e-10  Score=77.25  Aligned_cols=90  Identities=20%  Similarity=0.277  Sum_probs=56.5

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccCchhhhhHHHHHHHH
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVDNTEGYNIRQLSARE   76 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~   76 (143)
                      ...|.+|+|+|++||||||.+.+||.++...+.++.++..|.||....+      ...+.+++........       ..
T Consensus         9 ~k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~~~~~~~~~~-------~~   81 (211)
T d1j8yf2           9 DKIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDV-------VG   81 (211)
T ss_dssp             SSSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTCCEECCTTCCCH-------HH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCcceeecccchhh-------hH
Confidence            3458999999999999999999999999888899999999999887543      2224444432211110       11


Q ss_pred             HHHHHHHHH-hcCCeEEEEeCCch
Q psy2713          77 AQEDATKWL-KNDGEVAIIDGTTA   99 (143)
Q Consensus        77 ~~~~~~~~l-~~~~~~vi~d~~~~   99 (143)
                      .+.+++... ......+++|....
T Consensus        82 ~~~~a~~~~~~~~~d~IlIDTaGr  105 (211)
T d1j8yf2          82 IAKRGVEKFLSEKMEIIIVDTAGR  105 (211)
T ss_dssp             HHHHHHHHHHHTTCSEEEEECCCS
T ss_pred             HHHHHHHHhhccCCceEEEecCCc
Confidence            122222222 34467899998864

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.8e-10  Score=77.42  Aligned_cols=42  Identities=19%  Similarity=0.393  Sum_probs=35.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC-----CceeEehhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH-----KSKVFSVSAYR   46 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~-----~~~~~~~d~~~   46 (143)
                      .|.+|.++|++||||||+|+.|++.++...+     ++.+++.|+|.
T Consensus         1 ~P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~yy   47 (213)
T d1uj2a_           1 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   47 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEeccccc
Confidence            4889999999999999999999999876543     46778888874

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=99.17  E-value=7.1e-11  Score=76.33  Aligned_cols=37  Identities=27%  Similarity=0.346  Sum_probs=28.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      ..|+++|+|||||||+|+.|+++++...     ++.|+..+.
T Consensus         5 ~~I~i~G~pGsGKTTia~~La~~l~~~~-----i~~~~~~~~   41 (173)
T d1rkba_           5 PNILLTGTPGVGKTTLGKELASKSGLKY-----INVGDLARE   41 (173)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHCCEE-----EEHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHCCcE-----EechHHHHH
Confidence            4577999999999999999999987543     455655443

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=99.14  E-value=3.1e-10  Score=76.26  Aligned_cols=49  Identities=27%  Similarity=0.262  Sum_probs=43.1

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE   51 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~   51 (143)
                      +.+|.+|+|+|++||||||.+.+|+.++...+.++.+++.|.||....+
T Consensus         3 ~~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~e   51 (207)
T d1okkd2           3 EPKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGT   51 (207)
T ss_dssp             CCSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchh
Confidence            3467899999999999999999999999888899999999999877543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=99.13  E-value=8.1e-10  Score=74.21  Aligned_cols=47  Identities=28%  Similarity=0.299  Sum_probs=42.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE   51 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~   51 (143)
                      .+.+|+|+|++||||||.+.+||.++...+.++.+++.|.||.....
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~e   55 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAARE   55 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHH
Confidence            46789999999999999999999999888999999999999888643

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.12  E-value=4.2e-11  Score=79.05  Aligned_cols=45  Identities=31%  Similarity=0.311  Sum_probs=39.6

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +.+|.+|.++|++||||||+|+.|++.++..++.+..++.+++..
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~~~   63 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV   63 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccccccc
Confidence            456889999999999999999999999999999999988876643

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.2e-09  Score=73.39  Aligned_cols=36  Identities=22%  Similarity=0.388  Sum_probs=31.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      ..+|+|.|+.||||||+++.|++.|...++++..+.
T Consensus         3 G~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           3 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            468999999999999999999999988888776653

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=9.5e-10  Score=73.31  Aligned_cols=36  Identities=22%  Similarity=0.374  Sum_probs=31.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      ++|++.|+.||||||+++.|+++|...|+++.++..
T Consensus         1 mlI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~~~   36 (208)
T d1gsia_           1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAF   36 (208)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEec
Confidence            479999999999999999999999888887776644

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.9e-10  Score=81.67  Aligned_cols=44  Identities=18%  Similarity=0.369  Sum_probs=38.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~~   47 (143)
                      ..|.+|.++|++||||||+|+.|++.|..  .+.++.+++.|+|..
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F~~  123 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH  123 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeeeEC
Confidence            45889999999999999999999999863  467889999999853

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.02  E-value=9e-11  Score=79.19  Aligned_cols=39  Identities=21%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      |++.+|.+.|||||||||+|+.|+++|+..++     +.+++.+
T Consensus         1 Mk~i~IaIdGp~GsGKgT~ak~La~~lg~~~i-----stGdl~R   39 (223)
T d1q3ta_           1 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL-----DTGAMYR   39 (223)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEE-----EHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHhCCcEE-----CHHHHHH
Confidence            67788999999999999999999999987655     5554433

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=99.01  E-value=2.7e-10  Score=75.27  Aligned_cols=38  Identities=21%  Similarity=0.447  Sum_probs=29.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .|++|.++|.+||||||+|+.|.+ ++.     .+++.|.+.+.
T Consensus         2 ~p~IIgitG~~gSGKstva~~l~~-~g~-----~~~~~D~~~~~   39 (191)
T d1uf9a_           2 HPIIIGITGNIGSGKSTVAALLRS-WGY-----PVLDLDALAAR   39 (191)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHH-TTC-----CEEEHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH-CCC-----eEEEccHHHHH
Confidence            589999999999999999999954 443     35666665444

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.97  E-value=7.8e-11  Score=76.74  Aligned_cols=33  Identities=36%  Similarity=0.497  Sum_probs=28.5

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ++..++.|+|+|+|||||||+|+.|+++++..+
T Consensus         3 ~~~~~K~I~i~G~~GsGKTTla~~La~~~~~~~   35 (192)
T d1lw7a2           3 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS   35 (192)
T ss_dssp             GGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             CCccceEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence            455678999999999999999999999987543

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=2.5e-10  Score=76.73  Aligned_cols=37  Identities=24%  Similarity=0.358  Sum_probs=30.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK   48 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~   48 (143)
                      .+|++.|||||||||+|+.|+++|+..++     +.+++.+.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~gl~~i-----StGdLlR~   40 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQWHLL-----DSGAIYRV   40 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTCEEE-----EHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCcEE-----CHHHHHHH
Confidence            38899999999999999999999987654     66655443

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=4.5e-10  Score=72.31  Aligned_cols=37  Identities=22%  Similarity=0.252  Sum_probs=33.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +|+++|+||||||||++.|++++...+.+..++..|.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~   40 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH   40 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEecccc
Confidence            7999999999999999999999988888888876554

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=5.6e-09  Score=69.95  Aligned_cols=39  Identities=26%  Similarity=0.315  Sum_probs=29.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH   49 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~   49 (143)
                      |+.+|.++|.+||||||+|+.|. .++.     .++++|.+.+..
T Consensus         2 mk~iIgitG~igSGKStv~~~l~-~~G~-----~vidaD~i~~~l   40 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFA-DLGI-----NVIDADIIARQV   40 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH-HTTC-----EEEEHHHHHHHT
T ss_pred             CCEEEEEECCCcCCHHHHHHHHH-HCCC-----cEEEchHHHHHH
Confidence            56799999999999999999886 4443     466777765553

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=98.86  E-value=4.3e-09  Score=70.34  Aligned_cols=120  Identities=13%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh----------cCCCCccccCc-hhhhhHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL----------YNSHDIFRVDN-TEGYNIRQLS   73 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~~   73 (143)
                      |..+|.++|.+||||||+|+.|.+ ++.     .++++|.+-+..+..          ..+.+.+..++ .....++...
T Consensus         1 M~~iIgITG~igSGKStv~~~l~~-~G~-----~vidaD~i~~~l~~~~~~~~~~i~~~~~~~~~~~d~~i~r~~l~~~v   74 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFTD-LGV-----PLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERV   74 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHT-TTC-----CEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH-CCC-----eEEEchHHHHHHHhccchhHHHHHHhcccceecCCCcccHHHHhhhh
Confidence            347899999999999999998864 443     456777665443211          11122222211 1111111111


Q ss_pred             -------------HH-HHHHHHHHHH-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713          74 -------------AR-EAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ  138 (143)
Q Consensus        74 -------------~~-~~~~~~~~~l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r  138 (143)
                                   .. .....+..+. ......++++.+......   +..      .+. .++.+.||.+...+|.+.|
T Consensus        75 f~~~~~~~~l~~i~hp~v~~~~~~~~~~~~~~~vv~e~~ll~e~~---~~~------~~d-~ii~v~~~~~~r~~R~~~R  144 (205)
T d1jjva_          75 FNHDEDKLWLNNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENK---LTA------LCD-RILVVDVSPQTQLARSAQR  144 (205)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTT---CGG------GCS-EEEEEECCHHHHHHHHC--
T ss_pred             hhhhhhhhHhhcccCHHHHHHHHHHHhhccCCeEEEEeccccccc---hhh------hhh-heeeecchHHHHHHHHHhc
Confidence                         00 1112222333 233456888877665421   222      122 3456689999999998888


Q ss_pred             hc
Q psy2713         139 SM  140 (143)
Q Consensus       139 ~~  140 (143)
                      ..
T Consensus       145 ~~  146 (205)
T d1jjva_         145 DN  146 (205)
T ss_dssp             --
T ss_pred             CC
Confidence            43

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=5.7e-09  Score=68.33  Aligned_cols=25  Identities=32%  Similarity=0.389  Sum_probs=22.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+|+|+|||||||||+++.|.+.+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5899999999999999999998864

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=1.3e-08  Score=66.86  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=21.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .|+++||||||||||++.|++.+.
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            488999999999999999998864

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=1.4e-08  Score=68.28  Aligned_cols=29  Identities=24%  Similarity=0.258  Sum_probs=26.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +.++|++.|+.||||||+++.|+++|...
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            46799999999999999999999998653

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.72  E-value=1.1e-07  Score=61.23  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=22.2

Q ss_pred             EEEEccCCCChhHHHHHHHHHHcc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      |+++|+|||||||+++.|+..+..
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~   26 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGK   26 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCC
Confidence            899999999999999999998854

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.72  E-value=1.5e-07  Score=61.88  Aligned_cols=24  Identities=33%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             EEEEccCCCChhHHHHHHHHHHcc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      |+|+|||||||||+++.|++.++.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~~   26 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHSS   26 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCCC
Confidence            789999999999999999988753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=8.3e-09  Score=72.30  Aligned_cols=42  Identities=17%  Similarity=0.244  Sum_probs=34.3

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC---CCCceeEehhhh
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT---DHKSKVFSVSAY   45 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~---~~~~~~~~~d~~   45 (143)
                      ..|.+|.++|++||||||+|..|.+.+...   ...+.+++.|++
T Consensus        25 ~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          25 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            358899999999999999999998776432   345677899997

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.69  E-value=6.4e-09  Score=67.02  Aligned_cols=38  Identities=21%  Similarity=0.160  Sum_probs=33.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++|.++|.+||||||++..|..+|...|+++.++..|.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~   39 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG   39 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence            48899999999999999999999998899998885553

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.68  E-value=4.3e-09  Score=73.72  Aligned_cols=41  Identities=12%  Similarity=0.293  Sum_probs=34.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      ..+|.++|.+||||||+++.|.+.++..++++.+++.|+|.
T Consensus         4 ~pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsfy   44 (288)
T d1a7ja_           4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   44 (288)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            34899999999999999999999998888889999999984

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=5.5e-08  Score=65.93  Aligned_cols=30  Identities=20%  Similarity=0.206  Sum_probs=27.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      .|++|++-|+-||||||+++.|+++|...+
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~~~   30 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPEWH   30 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTTSE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhhcC
Confidence            488999999999999999999999986544

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.67  E-value=1.8e-07  Score=62.35  Aligned_cols=25  Identities=16%  Similarity=0.181  Sum_probs=22.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+|+++||||||||||.+.|.+..+
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            5899999999999999999998754

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=7.9e-09  Score=66.82  Aligned_cols=35  Identities=37%  Similarity=0.357  Sum_probs=28.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      +.|+++|+|||||||+++.+++.+...+.....+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~   36 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY   36 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence            46899999999999999999999876666555443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.55  E-value=1.7e-07  Score=64.25  Aligned_cols=37  Identities=35%  Similarity=0.249  Sum_probs=28.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .|.-|+|.|+||+|||++|+.|++.++..   ...++..+
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~~~~---~~~i~~~~   77 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEARVP---FITASGSD   77 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEHHH
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHcCCC---EEEEEhHH
Confidence            35679999999999999999999987543   33444443

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=98.50  E-value=1.1e-06  Score=59.27  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=32.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +..++++.|+||||||+++.+++......+..+..++.+
T Consensus        25 ~gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e   63 (242)
T d1tf7a2          25 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYE   63 (242)
T ss_dssp             SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeecc
Confidence            356999999999999999999998876667777777654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.48  E-value=3.9e-08  Score=66.64  Aligned_cols=27  Identities=41%  Similarity=0.434  Sum_probs=24.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..++|+||||+||||+|+.|++.++..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCC
Confidence            458899999999999999999998754

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.48  E-value=2.9e-08  Score=70.27  Aligned_cols=29  Identities=28%  Similarity=0.449  Sum_probs=25.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +|..++|+||||+|||++|+.|++.+...
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~~~   76 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLANAP   76 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccccc
Confidence            45778899999999999999999988643

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.48  E-value=2.4e-08  Score=65.78  Aligned_cols=30  Identities=23%  Similarity=0.330  Sum_probs=26.5

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..+|.+|++.|+.||||||+++.|++.++.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~   35 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKND   35 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456889999999999999999999988753

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.47  E-value=5.4e-08  Score=66.00  Aligned_cols=29  Identities=34%  Similarity=0.386  Sum_probs=24.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .+.-++|.||||+||||+|+.+++.++..
T Consensus        34 ~~~~~Ll~GPpG~GKTtla~~la~~~~~~   62 (239)
T d1ixsb2          34 PLEHLLLFGPPGLGKTTLAHVIAHELGVN   62 (239)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            34568899999999999999999988643

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.43  E-value=8.1e-07  Score=59.15  Aligned_cols=27  Identities=33%  Similarity=0.471  Sum_probs=24.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      |..++|.|+||+||||+|+.+++.+..
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            567999999999999999999998854

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.43  E-value=6.4e-08  Score=66.37  Aligned_cols=30  Identities=33%  Similarity=0.356  Sum_probs=26.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      +.-|+|+||||||||++|+.|++.++...+
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~   69 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFI   69 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccccccc
Confidence            456999999999999999999999876544

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=7.6e-08  Score=66.40  Aligned_cols=30  Identities=33%  Similarity=0.390  Sum_probs=26.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      .|.-++|.||||+|||++|+.|++.++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~~~~~~   73 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPF   73 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHHcCCCE
Confidence            367899999999999999999999987543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=5.7e-07  Score=61.88  Aligned_cols=28  Identities=29%  Similarity=0.396  Sum_probs=24.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .|.-|++.||||+|||++++.++..++.
T Consensus        37 ~~~giLL~GppGtGKT~l~~ala~~~~~   64 (258)
T d1e32a2          37 PPRGILLYGPPGTGKTLIARAVANETGA   64 (258)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             CCceeEEecCCCCCchHHHHHHHHHhCC
Confidence            4667999999999999999999998754

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.38  E-value=1.3e-07  Score=64.40  Aligned_cols=27  Identities=33%  Similarity=0.402  Sum_probs=24.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..++|+||||+||||+|+.|++.++.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            357999999999999999999998764

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.4e-07  Score=61.60  Aligned_cols=27  Identities=15%  Similarity=0.197  Sum_probs=23.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ++++|+++||+|||||||.+.|.+..+
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~~   28 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKHP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhCC
Confidence            557899999999999999999997753

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=98.35  E-value=2.3e-07  Score=62.58  Aligned_cols=36  Identities=31%  Similarity=0.510  Sum_probs=29.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      .+|+++|++||||||+.+.|.+++.. +.+..+++.|
T Consensus         1 ~vi~v~G~~GsGKTTLl~~ll~~~~~-~~~~~ivn~d   36 (244)
T d1yrba1           1 MIVVFVGTAGSGKTTLTGEFGRYLED-NYKVAYVNLD   36 (244)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHTT-TSCEEEEECC
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHHHhh-CCeEEEEecC
Confidence            47999999999999999999988764 4456666654

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.34  E-value=8.1e-08  Score=64.77  Aligned_cols=26  Identities=35%  Similarity=0.321  Sum_probs=23.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..++|+|+||+||||+|+.+++.+..
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~   71 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFG   71 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHh
Confidence            45889999999999999999998754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=98.31  E-value=1.1e-07  Score=70.33  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=27.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      .|..|+|+||+|||||.||+.||+.++.++.
T Consensus        48 ~ksNILliGPTGvGKTlLAr~LAk~l~VPFv   78 (443)
T d1g41a_          48 TPKNILMIGPTGVGKTEIARRLAKLANAPFI   78 (443)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             ccccEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            3678999999999999999999998866543

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=98.30  E-value=2.9e-07  Score=65.52  Aligned_cols=41  Identities=22%  Similarity=0.341  Sum_probs=35.7

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY   45 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~   45 (143)
                      +...|.++|+||||||||...|.+.+...+.+..++..|..
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDps   93 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS   93 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCc
Confidence            46789999999999999999999999888888888866643

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=98.30  E-value=3e-07  Score=65.33  Aligned_cols=43  Identities=28%  Similarity=0.430  Sum_probs=37.4

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +...|.++|+|||||||+...|.+++...+.+..++..|....
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~   92 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST   92 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGG
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccH
Confidence            4678999999999999999999999888899999997775433

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=1.2e-06  Score=60.54  Aligned_cols=28  Identities=29%  Similarity=0.310  Sum_probs=24.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +.-|++.|+||+|||++++.++..++..
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~~   68 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQAN   68 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTCE
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCCc
Confidence            5679999999999999999999998643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.27  E-value=8e-06  Score=54.47  Aligned_cols=39  Identities=15%  Similarity=0.118  Sum_probs=33.2

Q ss_pred             EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +++.|+||||||+++..++..+...+..+..++..++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~~~   77 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQ   77 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHHHH
Confidence            789999999999999999999887788777777765543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.26  E-value=3.6e-07  Score=62.24  Aligned_cols=28  Identities=32%  Similarity=0.288  Sum_probs=24.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..+++.|+||+||||+++.|++.+..
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            4568999999999999999999999854

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=2.4e-06  Score=58.88  Aligned_cols=38  Identities=16%  Similarity=0.198  Sum_probs=32.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.+.|+|||||||+|.+++......+..+.+++.+
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE   91 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE   91 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence            36899999999999999999998887777777777554

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=4.8e-06  Score=56.30  Aligned_cols=27  Identities=26%  Similarity=0.261  Sum_probs=24.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      |..+++.|+||+||||+|+.+++.+..
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l~~   60 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGLNC   60 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHC
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence            567899999999999999999998854

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=98.20  E-value=2.6e-06  Score=60.59  Aligned_cols=38  Identities=21%  Similarity=0.197  Sum_probs=31.0

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      |+-..|.+-|.-||||||+++.|++.+...+.++.++.
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            44456999999999999999999999887666555553

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.19  E-value=2.3e-07  Score=62.27  Aligned_cols=26  Identities=31%  Similarity=0.395  Sum_probs=22.8

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .++|.||||+||||+|+.+++.+...
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la~~l~~~   63 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLAHELLGR   63 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred             eEEEECCCCCCchhhHHHHHHHHhcc
Confidence            47899999999999999999987643

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=98.18  E-value=4.3e-07  Score=65.47  Aligned_cols=30  Identities=23%  Similarity=0.040  Sum_probs=26.6

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +++..++++||||+|||++|+.|++.++..
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~  181 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCGGK  181 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            456799999999999999999999998754

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.16  E-value=6.7e-07  Score=60.10  Aligned_cols=23  Identities=30%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .++|+|+||+||||+++.+++.+
T Consensus        35 ~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          35 HMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChHHHHHHHHHHH
Confidence            48899999999999999999886

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=8.6e-07  Score=61.40  Aligned_cols=42  Identities=19%  Similarity=0.166  Sum_probs=38.0

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +++|.+|+++|.-|+||||+|..|+..+...|.++-+++.|.
T Consensus         5 ~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~Dp   46 (296)
T d1ihua1           5 QNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP   46 (296)
T ss_dssp             SSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            467889999999999999999999999988899999998883

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.15  E-value=3.1e-07  Score=62.22  Aligned_cols=30  Identities=17%  Similarity=0.180  Sum_probs=25.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHK   36 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~   36 (143)
                      .+|.++|..||||||+|+.|++.++...++
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~g~~~i~   31 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQ   31 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhCCCeEEc
Confidence            589999999999999999999887654443

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=98.13  E-value=1.7e-05  Score=54.39  Aligned_cols=37  Identities=14%  Similarity=0.098  Sum_probs=30.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH-ccCCCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL-TWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l-~~~~~~~~~~~~d   43 (143)
                      .++++.|.||+||||++..++..+ ...+.++.+++.+
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E   73 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE   73 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeec
Confidence            589999999999999999999764 3557778888764

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.12  E-value=6.5e-07  Score=63.34  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=24.8

Q ss_pred             CCCe-EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           4 FTPL-VVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         4 ~~~~-~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+|. .++|+||||+|||.+|+.|++.+..
T Consensus        49 ~~p~~~~lf~Gp~GvGKT~lak~la~~l~~   78 (315)
T d1r6bx3          49 HKPVGSFLFAGPTGVGKTEVTVQLSKALGI   78 (315)
T ss_dssp             TSCSEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CCCceEEEEECCCcchhHHHHHHHHhhccC
Confidence            3443 7899999999999999999999854

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=1.5e-06  Score=52.75  Aligned_cols=43  Identities=12%  Similarity=0.045  Sum_probs=32.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc-CC-CCceeEehhhhhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW-TD-HKSKVFSVSAYRR   47 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~-~~-~~~~~~~~d~~~~   47 (143)
                      .-..|+++|++||||||+|+.|...|.. .| -....+..|+.++
T Consensus         5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~r   49 (122)
T d1g8fa3           5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTE   49 (122)
T ss_dssp             CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHH
T ss_pred             cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHHH
Confidence            4578999999999999999999988866 34 4445555554433

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.11  E-value=6.3e-07  Score=60.76  Aligned_cols=25  Identities=20%  Similarity=0.118  Sum_probs=22.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .++|+|+||+||||+|+.+++.+..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~l~~   59 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLESIFG   59 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHHHSC
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcC
Confidence            5789999999999999999998743

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.08  E-value=9.4e-07  Score=59.16  Aligned_cols=26  Identities=27%  Similarity=0.291  Sum_probs=22.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .++|+|+||+||||+|+.+++.+...
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~~~   62 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIYGK   62 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCChhHHHHHHHHHhhcC
Confidence            37799999999999999999987543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=98.07  E-value=1.8e-05  Score=56.13  Aligned_cols=30  Identities=17%  Similarity=0.132  Sum_probs=25.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      ....|.+-|+-||||||+++.|++.+...+
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHHHhccCC
Confidence            346799999999999999999999986543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.6e-07  Score=62.32  Aligned_cols=29  Identities=17%  Similarity=0.140  Sum_probs=25.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      .++|++-|+.||||||+++.|++.|...+
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~~~   30 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCEDWE   30 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTTEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence            47999999999999999999999875433

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.06  E-value=6.6e-07  Score=61.22  Aligned_cols=24  Identities=25%  Similarity=0.308  Sum_probs=21.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +++++|+||+||||+++.+++.+.
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHH
Confidence            567789999999999999998874

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=98.06  E-value=1.4e-05  Score=56.71  Aligned_cols=25  Identities=24%  Similarity=0.132  Sum_probs=19.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .|.|-|+-||||||+++.|++.+..
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~~   30 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGSR   30 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC----
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhCC
Confidence            4999999999999999999987753

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.05  E-value=6e-06  Score=53.86  Aligned_cols=20  Identities=30%  Similarity=0.421  Sum_probs=18.8

Q ss_pred             EEEEEccCCCChhHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~   27 (143)
                      .|+++|.||||||||.+.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~   44 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLI   44 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHhc
Confidence            59999999999999999996

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=98.01  E-value=1.2e-05  Score=56.72  Aligned_cols=25  Identities=36%  Similarity=0.397  Sum_probs=22.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      -+++++|+||+|||.+|+.|+..++
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            4567799999999999999999876

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=2.2e-06  Score=59.02  Aligned_cols=43  Identities=16%  Similarity=0.154  Sum_probs=37.9

Q ss_pred             CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ++....+|+++|--|+||||++-.|+..+...|.++-++..|.
T Consensus        16 ~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          16 ARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             HTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            3456789999999999999999999999988899998888884

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=3.4e-05  Score=49.06  Aligned_cols=20  Identities=45%  Similarity=0.642  Sum_probs=18.8

Q ss_pred             EEEEEccCCCChhHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~   27 (143)
                      .|+++|.||||||||.+.|.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~   21 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLV   21 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58999999999999999996

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=97.96  E-value=1.6e-06  Score=62.51  Aligned_cols=29  Identities=28%  Similarity=0.447  Sum_probs=25.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ++..++|+||+|+|||.+|+.||+.+...
T Consensus        67 p~~niLfiGPTGvGKTElAk~LA~~~~~~   95 (364)
T d1um8a_          67 SKSNILLIGPTGSGKTLMAQTLAKHLDIP   95 (364)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred             CCcceeeeCCCCccHHHHHHHHHhhcccc
Confidence            45679999999999999999999987544

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=97.89  E-value=7.1e-06  Score=52.19  Aligned_cols=29  Identities=24%  Similarity=0.272  Sum_probs=25.8

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +..+|++.|.-||||||+++.+++.++..
T Consensus        32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          32 KAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            34689999999999999999999999754

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.9e-06  Score=54.86  Aligned_cols=25  Identities=24%  Similarity=0.287  Sum_probs=22.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      -.++++.|+|||||||+|.+++...
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3589999999999999999999764

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.88  E-value=5.5e-06  Score=57.19  Aligned_cols=30  Identities=27%  Similarity=0.203  Sum_probs=25.4

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..+..++++|+||+|||+++..|++++..
T Consensus        36 r~~k~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          36 RRRKNNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             cCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            344567899999999999999999988744

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.86  E-value=5.5e-06  Score=54.52  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=25.5

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      +..+..++++|+||+|||+++..|++++..
T Consensus        40 r~~k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            345567899999999999999999998743

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.83  E-value=5.7e-06  Score=58.39  Aligned_cols=27  Identities=33%  Similarity=0.443  Sum_probs=23.9

Q ss_pred             CCCe-EEEEEccCCCChhHHHHHHHHHH
Q psy2713           4 FTPL-VVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         4 ~~~~-~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .+|. +++++|++|+|||.+|+.|++.+
T Consensus        50 ~kp~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          50 NRPIGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SSCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCcchHHHHHHHHHHHh
Confidence            4454 78999999999999999999987

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.82  E-value=6.1e-06  Score=55.96  Aligned_cols=28  Identities=18%  Similarity=0.222  Sum_probs=24.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      +.++++.|++|+||||+++.+++.++..
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~~   56 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNLP   56 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCCC
Confidence            4578999999999999999999887543

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=97.81  E-value=8.8e-06  Score=53.59  Aligned_cols=37  Identities=16%  Similarity=0.088  Sum_probs=32.2

Q ss_pred             eEEEEEcc-CCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVGL-PARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~-pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      +-++++|- +|+||||++-.|+..|...|+++.++..|
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d   39 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPV   39 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECcc
Confidence            46889999 59999999999999999999998888543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.77  E-value=5.1e-06  Score=55.54  Aligned_cols=24  Identities=29%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      -.+++++|+|||||||+|.+++..
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHH
Confidence            358999999999999999999754

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.76  E-value=8.8e-06  Score=54.73  Aligned_cols=25  Identities=32%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      -.++++.|+|||||||+|.+++...
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~   60 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMV   60 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999998764

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.74  E-value=1.1e-05  Score=54.14  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=25.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~   41 (143)
                      .+++++|..||||||+.+.+.+.  ..+.+..++.
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~--~~~~riaVI~   36 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE--QHGYKIAVIE   36 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS--CCCCCEEEEC
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc--CCCCcEEEEE
Confidence            47899999999999999998875  3355665553

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.74  E-value=8.6e-06  Score=55.74  Aligned_cols=25  Identities=36%  Similarity=0.573  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ...+.++|++||||||+++.|...+
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl~   65 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRFY   65 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3579999999999999999997554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.74  E-value=1.8e-05  Score=54.55  Aligned_cols=38  Identities=16%  Similarity=0.152  Sum_probs=31.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.+.|+|||||||+|.+++......+..+.++..+
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE   94 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE   94 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence            46899999999999999999998877667666666554

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=97.73  E-value=4.8e-06  Score=58.92  Aligned_cols=23  Identities=26%  Similarity=0.316  Sum_probs=21.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      -|+|.|+||+||||+|+.++.-|
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHS
T ss_pred             eEEEECCCCccHHHHHHHHHHhC
Confidence            58999999999999999999876

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=8.7e-06  Score=55.32  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ...+.++|++||||||+++.|...+
T Consensus        29 Ge~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          29 GEVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcC
Confidence            3579999999999999999998665

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.73  E-value=9.8e-06  Score=50.60  Aligned_cols=21  Identities=43%  Similarity=0.518  Sum_probs=18.9

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |+++|.||||||||.+.|...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999743

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.71  E-value=1.1e-05  Score=54.42  Aligned_cols=25  Identities=24%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~Gl~   50 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAGLE   50 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            4589999999999999999997543

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.69  E-value=1.2e-05  Score=54.66  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=22.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ...+.++|++||||||+.+.|...+
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl~   52 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERFY   52 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998655

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.69  E-value=1.1e-05  Score=54.83  Aligned_cols=25  Identities=20%  Similarity=0.194  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        29 Ge~~~liG~sGaGKSTll~~i~gl~   53 (240)
T d1g2912          29 GEFMILLGPSGCGKTTTLRMIAGLE   53 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhcCC
Confidence            3589999999999999999997543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.68  E-value=1e-05  Score=54.57  Aligned_cols=24  Identities=17%  Similarity=0.315  Sum_probs=20.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..++.+.|++||||||+.+.|+-.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          31 GEFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCcchhhHhccCC
Confidence            458999999999999999988744

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.5e-05  Score=53.54  Aligned_cols=25  Identities=28%  Similarity=0.250  Sum_probs=22.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..+++++|+||||||++|.+++...
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3699999999999999999998653

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.2e-05  Score=54.90  Aligned_cols=25  Identities=36%  Similarity=0.396  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+++.|...+
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhccc
Confidence            3589999999999999999997654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.67  E-value=3.1e-05  Score=49.61  Aligned_cols=22  Identities=41%  Similarity=0.523  Sum_probs=19.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ..|+++|.||||||||.+.|..
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~   27 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLG   27 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3699999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.1e-05  Score=54.74  Aligned_cols=25  Identities=16%  Similarity=0.267  Sum_probs=21.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~Gl~   55 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNLLE   55 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCc
Confidence            3589999999999999999997443

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.65  E-value=1.9e-05  Score=54.59  Aligned_cols=25  Identities=24%  Similarity=0.301  Sum_probs=22.3

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..+|.++|++|.||||+|+.+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998763

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.65  E-value=1.3e-05  Score=54.27  Aligned_cols=24  Identities=21%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      -++.+.|++||||||+.+.|+-.+
T Consensus        25 e~~~liGpnGaGKSTll~~i~Gl~   48 (240)
T d2onka1          25 DYCVLLGPTGAGKSVFLELIAGIV   48 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             EEEEEECCCCChHHHHHHHHHcCC
Confidence            467789999999999999998654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.64  E-value=0.00021  Score=46.85  Aligned_cols=27  Identities=11%  Similarity=0.176  Sum_probs=24.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+.-+++.|+||+||||+|..+++.+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999998763

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.64  E-value=2.6e-05  Score=53.75  Aligned_cols=38  Identities=16%  Similarity=0.138  Sum_probs=30.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ..++.+.|+|||||||+|..++......+..+..+..+
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE   97 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE   97 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence            46899999999999999999997776666666666544

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.62  E-value=1.8e-05  Score=54.97  Aligned_cols=25  Identities=28%  Similarity=0.279  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.++|++||||||+.+.|.-.+
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3579999999999999999998554

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=97.61  E-value=1.6e-05  Score=51.43  Aligned_cols=23  Identities=30%  Similarity=0.287  Sum_probs=20.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+|+|.||+||||+|..|.++
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            46899999999999999998876

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.60  E-value=2e-05  Score=53.41  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=21.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|.-.+
T Consensus        32 Ge~~~liGpsGaGKSTLl~~i~Gl~   56 (239)
T d1v43a3          32 GEFLVLLGPSGCGKTTTLRMIAGLE   56 (239)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCC
Confidence            3589999999999999999998554

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.58  E-value=1.2e-05  Score=54.14  Aligned_cols=25  Identities=16%  Similarity=0.307  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCc
Confidence            3589999999999999999998543

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.58  E-value=1.3e-05  Score=52.99  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=21.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+..+
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3578999999999999999998544

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=97.57  E-value=1.4e-05  Score=51.67  Aligned_cols=23  Identities=30%  Similarity=0.247  Sum_probs=20.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+|+|+||+||||+|..|.++
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            46899999999999999998765

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.57  E-value=1.6e-05  Score=54.55  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=21.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      -.++.+.|++||||||+++.|+-.
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            358999999999999999999743

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.57  E-value=3.2e-05  Score=48.45  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..-|+++|.||||||||.+.+...
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCC
Confidence            345899999999999999998753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.55  E-value=2.5e-05  Score=51.98  Aligned_cols=25  Identities=28%  Similarity=0.363  Sum_probs=22.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++++.|.||+||||++.+++..+
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4699999999999999999999765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.54  E-value=0.00042  Score=45.50  Aligned_cols=28  Identities=29%  Similarity=0.362  Sum_probs=23.0

Q ss_pred             CC-eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TP-LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~-~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      || ..|.++|.+++|||||...|....+.
T Consensus         1 k~~ini~iiGhvd~GKSTL~~~Ll~~~g~   29 (204)
T d2c78a3           1 KPHVNVGTIGHVDHGKTTLTAALTYVAAA   29 (204)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCcHHHHHHHHHHHhhh
Confidence            34 56999999999999999999765543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=97.54  E-value=3.3e-05  Score=49.22  Aligned_cols=24  Identities=33%  Similarity=0.470  Sum_probs=20.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .+..-|+++|.||||||||...+.
T Consensus        14 ~~~~kI~vvG~~~vGKSsLi~~l~   37 (176)
T d1fzqa_          14 DQEVRILLLGLDNAGKTTLLKQLA   37 (176)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHh
Confidence            345679999999999999999884

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.53  E-value=4.4e-05  Score=49.10  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      -..|.+.|.|.+|||||.+.|.+
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHH
Confidence            34699999999999999999974

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.53  E-value=3.2e-05  Score=49.17  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=20.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +..-|+++|.||||||||...|..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhc
Confidence            345689999999999999999874

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.52  E-value=2.4e-05  Score=51.77  Aligned_cols=37  Identities=14%  Similarity=0.135  Sum_probs=25.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH-HccCCCCceeEeh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY-LTWTDHKSKVFSV   42 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~-l~~~~~~~~~~~~   42 (143)
                      ..++++.|.||+|||++|.+++.. ....+.....++.
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~   63 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTF   63 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccc
Confidence            468999999999999999887643 2222334444444

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.52  E-value=2.7e-05  Score=48.43  Aligned_cols=21  Identities=38%  Similarity=0.551  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |+++|.||+|||||...|...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999854

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=97.51  E-value=2.6e-05  Score=50.12  Aligned_cols=23  Identities=26%  Similarity=0.255  Sum_probs=20.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-|+|+|.||+||||+|..|.++
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc
Confidence            46999999999999999998876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.51  E-value=3.2e-05  Score=49.25  Aligned_cols=24  Identities=33%  Similarity=0.450  Sum_probs=20.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +..-|+|+|.||||||||...|..
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            445688999999999999999863

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.50  E-value=4.6e-05  Score=50.56  Aligned_cols=39  Identities=18%  Similarity=0.239  Sum_probs=32.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +.+.+..|-.|+||||+|..|+..+...+.++.++..|.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            345566699999999999999999988888888887764

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.50  E-value=1.5e-05  Score=54.51  Aligned_cols=25  Identities=32%  Similarity=0.570  Sum_probs=21.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ...+.++|++||||||+.+.|...+
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhcC
Confidence            3579999999999999999887544

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.49  E-value=5.5e-05  Score=51.55  Aligned_cols=38  Identities=21%  Similarity=0.182  Sum_probs=33.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      +.|.++|-=|+||||+|-.|+..|...|.++.++..|.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID~D~   39 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP   39 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            35667899999999999999999988999999998874

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=97.49  E-value=2.7e-05  Score=49.18  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=19.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .-|+++|.||||||||...|..
T Consensus         3 ~ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           3 LRLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHcC
Confidence            3488999999999999999864

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=97.47  E-value=8.3e-05  Score=53.93  Aligned_cols=31  Identities=13%  Similarity=0.116  Sum_probs=26.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH   35 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~   35 (143)
                      +.-+|+++|+.||||||....+...+.....
T Consensus       157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~  187 (401)
T d1p9ra_         157 PHGIILVTGPTGSGKSTTLYAGLQELNSSER  187 (401)
T ss_dssp             SSEEEEEECSTTSCHHHHHHHHHHHHCCTTS
T ss_pred             hhceEEEEcCCCCCccHHHHHHhhhhcCCCc
Confidence            3468999999999999999999998866544

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.47  E-value=4.5e-05  Score=50.66  Aligned_cols=40  Identities=20%  Similarity=0.150  Sum_probs=32.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .+.+.+..+-.|+||||+|..|+..+...+.++.++..|.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            3344455588999999999999999988888888887663

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.47  E-value=1.5e-05  Score=54.04  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=21.8

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl~   55 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGLD   55 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcCc
Confidence            3589999999999999999998543

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.45  E-value=3.3e-05  Score=49.44  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=18.9

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      -|+|+|.||+|||||.+.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            389999999999999999963

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.40  E-value=4.8e-05  Score=48.05  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=18.9

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+++|.||+|||||...+..
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998874

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=4.6e-05  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=19.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .|+|+|.||||||||...|...
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6788999999999999999754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.39  E-value=4.1e-05  Score=51.87  Aligned_cols=25  Identities=24%  Similarity=0.392  Sum_probs=21.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      -.++.+.|++||||||+.+.|.-.+
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl~   56 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGLV   56 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCC
Confidence            3589999999999999999997443

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.38  E-value=0.00019  Score=49.44  Aligned_cols=27  Identities=15%  Similarity=0.175  Sum_probs=23.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      ..|.++|..|||||||+..|....+..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~   33 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRI   33 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCcc
Confidence            479999999999999999998766543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=97.38  E-value=5.2e-05  Score=49.89  Aligned_cols=28  Identities=11%  Similarity=0.250  Sum_probs=25.2

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +++.++++.|||++|||++|..|.+.++
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            4567999999999999999999998874

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.38  E-value=4.3e-05  Score=52.17  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|.-.+
T Consensus        30 Gei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          30 GDVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHCCC
Confidence            3589999999999999999997443

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=5.2e-05  Score=48.15  Aligned_cols=21  Identities=19%  Similarity=0.376  Sum_probs=19.0

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |+++|.+|||||||...+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            899999999999999998753

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.37  E-value=3e-05  Score=54.82  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..|+++|++||||||+.+.|...++
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             CCEEEEeeccccchHHHHHHhhhcc
Confidence            3589999999999999999987765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=5.1e-05  Score=48.86  Aligned_cols=19  Identities=21%  Similarity=0.314  Sum_probs=17.7

Q ss_pred             EEEEccCCCChhHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~   27 (143)
                      |++.|.||+|||||+..+.
T Consensus         8 i~ivG~~~vGKTsLi~~l~   26 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYT   26 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHh
Confidence            7899999999999999886

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=5.9e-05  Score=48.03  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=18.9

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+|+|.||||||||...+..
T Consensus         7 KI~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999999874

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=6e-05  Score=48.02  Aligned_cols=20  Identities=20%  Similarity=0.370  Sum_probs=18.2

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.||||||||...+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999998864

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=97.33  E-value=6.2e-05  Score=47.48  Aligned_cols=21  Identities=33%  Similarity=0.532  Sum_probs=18.7

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      -|+|.|++|||||||...+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478899999999999999975

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=5.3e-05  Score=47.46  Aligned_cols=20  Identities=35%  Similarity=0.581  Sum_probs=18.4

Q ss_pred             EEEEEccCCCChhHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~   27 (143)
                      -|+++|.|+||||||.++|.
T Consensus         3 kI~lvG~~nvGKSsLin~l~   22 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALA   22 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999999986

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=7.4e-05  Score=47.22  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=21.9

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |+..=|+++|.+|+|||||...+...
T Consensus         1 mk~~Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           1 MREYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHhC
Confidence            34566999999999999999998753

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.33  E-value=4.1e-05  Score=51.58  Aligned_cols=23  Identities=26%  Similarity=0.426  Sum_probs=20.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      -.++.+.|++||||||+.+.|+-
T Consensus        25 Gei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          25 GEILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             TCEEECBCCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHhC
Confidence            35899999999999999999975

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=5.9e-05  Score=48.01  Aligned_cols=22  Identities=41%  Similarity=0.554  Sum_probs=19.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      -.|+|.|.|++|||||.+.|..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            3689999999999999999963

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=6.9e-05  Score=49.03  Aligned_cols=22  Identities=41%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      -|++.|+||||||||...|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.32  E-value=6e-05  Score=50.98  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=21.7

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..++.+.|++||||||+.+.|+-.+
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4589999999999999999997544

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=6.6e-05  Score=47.69  Aligned_cols=20  Identities=30%  Similarity=0.624  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|||||||.+.+..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999985

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=97.31  E-value=6.7e-05  Score=48.10  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .+..=|+++|.||||||||...+.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            344668999999999999999875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.31  E-value=4.7e-05  Score=48.54  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=20.5

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      ....-|+++|.|++|||||.+.|.
T Consensus        14 ~~~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          14 DTGIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SCSEEEEEEECTTSSHHHHHTTTC
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHh
Confidence            345679999999999999999884

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=6.9e-05  Score=47.31  Aligned_cols=20  Identities=25%  Similarity=0.446  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.||+|||||...+..
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999874

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=8.1e-05  Score=50.65  Aligned_cols=24  Identities=38%  Similarity=0.411  Sum_probs=21.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .+.+++|.||+||||++..|+..+
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999765

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00011  Score=46.84  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=20.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ..=|+++|.+|+|||||...+..
T Consensus         6 ~~Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           6 THKLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHHh
Confidence            34689999999999999999874

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.28  E-value=7.6e-05  Score=47.61  Aligned_cols=20  Identities=35%  Similarity=0.579  Sum_probs=18.4

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|||||||...+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999864

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.27  E-value=8.1e-05  Score=47.29  Aligned_cols=20  Identities=35%  Similarity=0.522  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|||||||...+..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999864

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=8.2e-05  Score=47.17  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.0

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+|+|.+|+|||||...+..
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999984

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=8.9e-05  Score=47.19  Aligned_cols=20  Identities=30%  Similarity=0.405  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.||||||||...+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            89999999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.24  E-value=8.8e-05  Score=47.64  Aligned_cols=20  Identities=30%  Similarity=0.423  Sum_probs=18.5

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|||||||...+..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999874

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=9.2e-05  Score=46.79  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=18.9

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+++|.+|+|||||...+..
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999874

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=9.7e-05  Score=46.63  Aligned_cols=20  Identities=25%  Similarity=0.471  Sum_probs=18.4

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.||+|||||.+.+..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999999874

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=9.9e-05  Score=46.42  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=18.7

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|||||||...+..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999999974

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.21  E-value=5.7e-05  Score=54.57  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=23.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..++++|.||+|||+++..|++++..
T Consensus        42 ~k~n~llvG~~GvGKtaiv~~la~~i~~   69 (387)
T d1qvra2          42 TKNNPVLIGEPGVGKTAIVEGLAQRIVK   69 (387)
T ss_dssp             SCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEECCCCCCHHHHHHHHHHHHHh
Confidence            3445788899999999999999988743

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.21  E-value=0.0001  Score=49.32  Aligned_cols=22  Identities=23%  Similarity=0.440  Sum_probs=19.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      ....+|+|.||+|||||.+.|.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHhhc
Confidence            3567899999999999999985

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.20  E-value=6.3e-05  Score=48.33  Aligned_cols=19  Identities=47%  Similarity=0.751  Sum_probs=17.6

Q ss_pred             EEEEccCCCChhHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~   27 (143)
                      |.++|.|+||||||.+.|.
T Consensus         4 VaiiG~~nvGKSSLin~L~   22 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVS   22 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSE
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7899999999999999884

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=9.8e-05  Score=46.66  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=21.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+..=|+++|.+|+|||||.+.+..
T Consensus         2 ~k~~Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           2 LRELKVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceeEEEEECCCCcCHHHHHHHHHh
Confidence            3445688999999999999999874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00011  Score=46.40  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=20.0

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ..=|+++|.+|||||||...+..
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHh
Confidence            34589999999999999999875

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00012  Score=46.45  Aligned_cols=21  Identities=38%  Similarity=0.438  Sum_probs=18.9

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+++|.+|+|||||...+..
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999998875

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00015  Score=45.91  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=20.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +.=|+++|.||||||||...+..
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHh
Confidence            45699999999999999999874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=97.17  E-value=0.0001  Score=46.81  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=19.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      +..-|+++|.|||||||+...+.
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHh
Confidence            34558899999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00011  Score=46.53  Aligned_cols=21  Identities=29%  Similarity=0.428  Sum_probs=18.4

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+++|.+|+|||||...+..
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998864

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.16  E-value=0.00018  Score=49.46  Aligned_cols=37  Identities=19%  Similarity=0.200  Sum_probs=32.1

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .|++.|-=|+||||+|-.|+..|...|.++-++..|.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID~Dp   40 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP   40 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEecCC
Confidence            4456999999999999999999988899998888873

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.15  E-value=0.0011  Score=43.94  Aligned_cols=24  Identities=25%  Similarity=0.372  Sum_probs=20.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .+|.+.|.|.+|||||...|....
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhhc
Confidence            358999999999999999997654

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00014  Score=51.94  Aligned_cols=25  Identities=32%  Similarity=0.369  Sum_probs=20.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      ..+.+++|+||+||||+...+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHH
Confidence            3589999999999999987665444

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=0.00013  Score=45.88  Aligned_cols=20  Identities=25%  Similarity=0.403  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |++.|.+|||||||.+.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999999874

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.00013  Score=47.39  Aligned_cols=20  Identities=30%  Similarity=0.484  Sum_probs=18.4

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|||||||...+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999999874

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.14  E-value=7.5e-05  Score=47.78  Aligned_cols=19  Identities=42%  Similarity=0.716  Sum_probs=17.7

Q ss_pred             EEEEccCCCChhHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~   27 (143)
                      |.|+|.|+||||||.+.|.
T Consensus         4 VaivG~~nvGKSTLin~L~   22 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMT   22 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            7889999999999999985

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00013  Score=46.17  Aligned_cols=20  Identities=40%  Similarity=0.620  Sum_probs=18.0

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|+|||||.+.+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999998863

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00018  Score=45.43  Aligned_cols=24  Identities=17%  Similarity=0.314  Sum_probs=20.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +..=|+++|.+|+|||+|...+..
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHc
Confidence            345589999999999999999874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00015  Score=46.30  Aligned_cols=21  Identities=19%  Similarity=0.412  Sum_probs=19.0

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+|+|.+|+|||||...+..
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999999874

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=97.11  E-value=0.00013  Score=50.15  Aligned_cols=17  Identities=18%  Similarity=0.216  Sum_probs=13.6

Q ss_pred             EEEEccCCCChhHHHHH
Q psy2713           9 VALVGLPARGKTVLAHK   25 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~   25 (143)
                      +++.|+|||||||++-.
T Consensus        17 ~lI~g~aGTGKTt~l~~   33 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVITN   33 (306)
T ss_dssp             EEECCCTTSCHHHHHHH
T ss_pred             EEEEeeCCccHHHHHHH
Confidence            56779999999987544

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.11  E-value=0.00056  Score=46.83  Aligned_cols=39  Identities=10%  Similarity=0.227  Sum_probs=26.3

Q ss_pred             CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecC
Q psy2713          88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ  127 (143)
Q Consensus        88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~  127 (143)
                      .+-++|+|+...-..+-+..++ ++++++.+.+++---++
T Consensus        92 D~avlvvda~~Gv~~~t~~~~~-~~~~~~~p~~i~iNk~D  130 (267)
T d2dy1a2          92 DAALVAVSAEAGVQVGTERAWT-VAERLGLPRMVVVTKLD  130 (267)
T ss_dssp             SEEEEEEETTTCSCHHHHHHHH-HHHHTTCCEEEEEECGG
T ss_pred             CceEEEeeccCCccchhHHHHH-hhhhccccccccccccc
Confidence            4678889998655555555666 88888888865544333

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=97.10  E-value=0.00015  Score=45.91  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+++|.+|+|||||.+.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999999864

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00015  Score=45.85  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|+|||+|...+..
T Consensus         5 i~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999885

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.09  E-value=0.00016  Score=49.18  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=21.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .+.-|++.|.|||||||+.+.|..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg   54 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIG   54 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Confidence            456799999999999999999963

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.07  E-value=0.00015  Score=46.36  Aligned_cols=22  Identities=36%  Similarity=0.570  Sum_probs=19.6

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .-|.++|.+|+|||||...|..
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            5689999999999999999863

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=97.07  E-value=0.00017  Score=49.95  Aligned_cols=17  Identities=18%  Similarity=0.255  Sum_probs=14.1

Q ss_pred             EEEEccCCCChhHHHHH
Q psy2713           9 VALVGLPARGKTVLAHK   25 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~   25 (143)
                      +++.|+|||||||++-.
T Consensus        27 ~lV~g~aGSGKTt~l~~   43 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTH   43 (318)
T ss_dssp             EEEEECTTSCHHHHHHH
T ss_pred             EEEEecCCccHHHHHHH
Confidence            66779999999987654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00017  Score=45.98  Aligned_cols=21  Identities=38%  Similarity=0.313  Sum_probs=18.3

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |+++|.+|+|||||...+...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999988753

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=97.06  E-value=0.00021  Score=48.99  Aligned_cols=29  Identities=21%  Similarity=0.266  Sum_probs=25.4

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ++..++++.|+|++|||+++..|.+.++.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg~  130 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVPF  130 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            45678999999999999999999988753

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00019  Score=45.20  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=19.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ..=|++.|.+|+|||||...+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            34578899999999999999874

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.04  E-value=4.7e-05  Score=47.65  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.1

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      |+++|.|++|||||.+.|...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999744

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.02  E-value=0.00017  Score=46.55  Aligned_cols=20  Identities=20%  Similarity=0.441  Sum_probs=18.2

Q ss_pred             EEEEEccCCCChhHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~   27 (143)
                      =|++.|.+|||||||...+.
T Consensus         4 KivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            38899999999999999993

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00021  Score=45.14  Aligned_cols=22  Identities=23%  Similarity=0.363  Sum_probs=19.0

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      =|+++|.+|+|||||...+...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4788999999999999998743

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0002  Score=45.51  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+++|.+|+|||||...+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            388999999999999998863

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=96.98  E-value=0.0061  Score=40.65  Aligned_cols=38  Identities=18%  Similarity=0.071  Sum_probs=29.1

Q ss_pred             CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ...++..+++|..|||||-++-..+...-..|..+.++
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l  110 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL  110 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEE
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEE
Confidence            35678899999999999999998886654455544444

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.98  E-value=0.0002  Score=47.48  Aligned_cols=22  Identities=18%  Similarity=0.344  Sum_probs=19.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .=|+|.|.+|||||||.+.+..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4589999999999999999863

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00024  Score=45.53  Aligned_cols=23  Identities=30%  Similarity=0.302  Sum_probs=20.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .=|+++|.+|+|||||.+++...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            45999999999999999998753

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.96  E-value=0.00012  Score=46.58  Aligned_cols=20  Identities=30%  Similarity=0.489  Sum_probs=8.4

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+|.|.+|||||||...|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78899999999999998863

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00025  Score=45.52  Aligned_cols=20  Identities=35%  Similarity=0.368  Sum_probs=18.6

Q ss_pred             EEEEccCCCChhHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~   28 (143)
                      |+++|.+|+|||||...+..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            89999999999999999874

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.90  E-value=0.00015  Score=46.01  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=17.7

Q ss_pred             EEEEEccCCCChhHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~   28 (143)
                      =|+++|.+|+|||||...+..
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478899999999999988753

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.00029  Score=45.08  Aligned_cols=22  Identities=32%  Similarity=0.453  Sum_probs=19.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      =|+|+|.+|+|||+|...+...
T Consensus         4 KivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988753

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.90  E-value=0.0003  Score=44.53  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=19.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .=|+++|.+|||||||...+..
T Consensus         5 ~Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           5 YKLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHh
Confidence            4478899999999999999875

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.87  E-value=9e-05  Score=49.80  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=19.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ....+|+|.||+|||||.+.|.-
T Consensus        97 ~~~~vl~G~SGVGKSSLiN~L~~  119 (231)
T d1t9ha2          97 DKTTVFAGQSGVGKSSLLNAISP  119 (231)
T ss_dssp             TSEEEEEESHHHHHHHHHHHHCC
T ss_pred             cceEEEECCCCccHHHHHHhhcc
Confidence            35668999999999999999963

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00032  Score=45.25  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=20.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ..=|+++|.+|+|||+|...+...
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhC
Confidence            345889999999999999988753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.78  E-value=0.0004  Score=44.50  Aligned_cols=23  Identities=22%  Similarity=0.382  Sum_probs=20.1

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .=|+|.|.+|||||||...+...
T Consensus         3 ~Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           3 LKLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            34899999999999999999755

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.68  E-value=0.00094  Score=45.05  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=20.3

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      -|++.|.+|+||+++|+.|-..-.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEECCCCcCHHHHHHHHHHhcC
Confidence            478889999999999999976543

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00075  Score=42.99  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=21.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +-.-|+++|.+|+|||||...+...
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHS
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhC
Confidence            3456999999999999999988753

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=96.67  E-value=0.00056  Score=41.15  Aligned_cols=36  Identities=17%  Similarity=0.088  Sum_probs=24.2

Q ss_pred             CeEEEEEccCCCChhHHHH-HHHHHHccCCCCceeEe
Q psy2713           6 PLVVALVGLPARGKTVLAH-KLSRYLTWTDHKSKVFS   41 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~-~l~~~l~~~~~~~~~~~   41 (143)
                      ...+++++++|||||+.+- .+.+.....+....++.
T Consensus         7 ~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           7 GMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             TCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            3577899999999998774 44455444455455543

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.61  E-value=0.00064  Score=43.34  Aligned_cols=30  Identities=17%  Similarity=0.210  Sum_probs=22.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH-HccCCCC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY-LTWTDHK   36 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~-l~~~~~~   36 (143)
                      .=|+|.|..||||||+.+.+... +...+..
T Consensus         3 ~KivllG~~~vGKTsl~~r~~~~~~~t~~~~   33 (195)
T d1svsa1           3 VKLLLLGAGESGKSTIVKQMKIIHEAGTGIV   33 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence            34899999999999999998743 3333433

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.52  E-value=0.015  Score=39.96  Aligned_cols=27  Identities=22%  Similarity=0.434  Sum_probs=22.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTD   34 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~   34 (143)
                      -+.+.|.+|+||||++..+++.....+
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~~~~~~   71 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQSIAYNH   71 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHHHHHHC
T ss_pred             eeeEeCCCCCCHHHHHHHHHHHHhhcC
Confidence            478889999999999999998764433

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.00098  Score=48.00  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=25.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .-+++.|.+|||||++.+.+...+-..+....++
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iii   84 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIV   84 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence            3489999999999999887776554445544444

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.48  E-value=0.0011  Score=44.51  Aligned_cols=23  Identities=13%  Similarity=0.209  Sum_probs=20.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ..+++++|+.+|||||+.++++-
T Consensus        41 ~~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          41 RRMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEeccCchhhHHHHHHHHH
Confidence            35799999999999999999874

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.45  E-value=0.0027  Score=39.11  Aligned_cols=38  Identities=24%  Similarity=0.182  Sum_probs=32.3

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      ...+-+++||+.|||||-.-..++++...+.++.++..
T Consensus         6 ~G~l~lI~GpMfSGKTteLi~~~~~~~~~g~~vl~i~~   43 (141)
T d1xx6a1           6 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKP   43 (141)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             ceeEEEEEeccccHHHHHHHHHHHHhhhcCCcEEEEEe
Confidence            34788899999999999999999888888888888754

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.36  E-value=0.0014  Score=39.64  Aligned_cols=23  Identities=17%  Similarity=0.055  Sum_probs=19.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      ...++.++.|||||+++-.+...
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~   31 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAA   31 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHT
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHH
Confidence            57899999999999998766543

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.35  E-value=0.012  Score=39.88  Aligned_cols=37  Identities=22%  Similarity=0.106  Sum_probs=27.1

Q ss_pred             CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ..|+.-++.|..|||||-+|-..+...-..|..+.++
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m  138 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFM  138 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             cCcceeeeeccccccccHHHHHHHHHHHhcccceeEE
Confidence            4567889999999999999988875543334444444

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=96.34  E-value=0.0012  Score=45.23  Aligned_cols=23  Identities=35%  Similarity=0.628  Sum_probs=20.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      ..-|.++|+|.|||||+-..|..
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHC
Confidence            45789999999999999999873

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.33  E-value=0.0011  Score=45.37  Aligned_cols=24  Identities=25%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +.+-+++|+.||||||+-.+|.-.
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~   47 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWV   47 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457899999999999999888543

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.0012  Score=47.63  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=20.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .|.-|.++|.||+||||+.+.|.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHh
Confidence            35679999999999999999995

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0039  Score=37.94  Aligned_cols=36  Identities=17%  Similarity=0.156  Sum_probs=29.7

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      .+-+++||+.|||||-.-..+.++...+.++.++..
T Consensus         3 ~L~li~GpMfsGKTt~Li~~~~~~~~~g~~v~~ikp   38 (133)
T d1xbta1           3 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY   38 (133)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEE
T ss_pred             EEEEEEecccCHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            567889999999999888888877777777777754

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.00016  Score=46.32  Aligned_cols=23  Identities=26%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.+|+|+.||||||+..+|.-.+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            56789999999999999998665

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=96.24  E-value=0.002  Score=41.91  Aligned_cols=26  Identities=31%  Similarity=0.542  Sum_probs=21.9

Q ss_pred             CC-eEEEEEccCCCChhHHHHHHHHHH
Q psy2713           5 TP-LVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         5 ~~-~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      || ..|.++|-+.+|||||+..|...+
T Consensus         1 kp~ini~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           1 KPHVNVGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCcHHHHHHHHHHHH
Confidence            45 459999999999999999997654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=96.24  E-value=0.0014  Score=43.59  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=19.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      .+++++|+..+||||+.++++-
T Consensus        36 ~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          36 ELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             CEEEEESCSSSSHHHHHHHHHH
T ss_pred             cEEEEECCCccccchhhhhhHH
Confidence            4789999999999999999873

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=96.22  E-value=0.0019  Score=44.06  Aligned_cols=25  Identities=24%  Similarity=0.594  Sum_probs=21.6

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .+.-|+++|.|.+||||+...|...
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CceEEEEEecCccchhhhhhhhhcc
Confidence            3466999999999999999999853

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=96.18  E-value=0.0018  Score=44.60  Aligned_cols=24  Identities=25%  Similarity=0.577  Sum_probs=20.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHH
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSR   28 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~   28 (143)
                      +..-|.++|.|.|||||+-..|-.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~   32 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITK   32 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHC
Confidence            345699999999999999999974

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.01  E-value=0.0018  Score=41.58  Aligned_cols=22  Identities=23%  Similarity=0.232  Sum_probs=19.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      +|+++|...||||.+|..|+..
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS
T ss_pred             CEEEECCCCccHHHHHHHHHhc
Confidence            4799999999999999998743

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=96.00  E-value=0.0056  Score=37.52  Aligned_cols=37  Identities=24%  Similarity=0.206  Sum_probs=28.8

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      .+-+++||+.|||||-.-..++++...+.++.++...
T Consensus         3 ~L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~   39 (139)
T d2b8ta1           3 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPK   39 (139)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             EEEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEc
Confidence            5678899999999996666677776777777777543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.12  Score=34.99  Aligned_cols=24  Identities=33%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      -+.+.|.+|+|||+++..+++...
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~~~   93 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINNVA   93 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHH
Confidence            477889999999999999987753

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.97  E-value=0.035  Score=35.72  Aligned_cols=25  Identities=12%  Similarity=0.016  Sum_probs=18.9

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      .+..|++.||   ||+|+.+.|.+.++.
T Consensus         8 ~~Rpivi~Gp---~K~ti~~~L~~~~p~   32 (199)
T d1kjwa2           8 YARPIIILGP---TKDRANDDLLSEFPD   32 (199)
T ss_dssp             SCCCEEEEST---THHHHHHHHHHHCTT
T ss_pred             CCCCEEEECc---CHHHHHHHHHHhCcc
Confidence            3456666775   699999999988653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.91  E-value=0.002  Score=44.73  Aligned_cols=19  Identities=26%  Similarity=0.515  Sum_probs=17.8

Q ss_pred             EEEEccCCCChhHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~   27 (143)
                      |.++|.|.||||||-+.|-
T Consensus         3 v~lvG~pn~GKStlfn~lt   21 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAAT   21 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHH
T ss_pred             EeEECCCCCCHHHHHHHHH
Confidence            7899999999999999995

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.68  E-value=0.0034  Score=44.56  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=20.6

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.+-+++|+.||||||+..+|.=.|
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~~l   49 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISFVL   49 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4577899999999999999986433

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=95.67  E-value=0.0026  Score=44.23  Aligned_cols=18  Identities=39%  Similarity=0.558  Sum_probs=15.6

Q ss_pred             eEEEEEccCCCChhHHHH
Q psy2713           7 LVVALVGLPARGKTVLAH   24 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~   24 (143)
                      -+-+|-|++|+|||||+.
T Consensus        15 ~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             CEEEEECSTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            466899999999999884

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.67  E-value=0.0048  Score=39.99  Aligned_cols=25  Identities=28%  Similarity=0.503  Sum_probs=21.2

Q ss_pred             CCCCe-EEEEEccCCCChhHHHHHHH
Q psy2713           3 QFTPL-VVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         3 ~~~~~-~i~l~G~pGsGKSTla~~l~   27 (143)
                      +.+|. .|.++|-..+|||||...|.
T Consensus         4 ~~~p~ini~iiGhVd~GKSTL~~~L~   29 (205)
T d2qn6a3           4 KVQPEVNIGVVGHVDHGKTTLVQAIT   29 (205)
T ss_dssp             CCCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEEccCCcHHHHHHHHH
Confidence            34664 59999999999999999995

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=95.58  E-value=0.0024  Score=44.58  Aligned_cols=18  Identities=39%  Similarity=0.558  Sum_probs=15.8

Q ss_pred             eEEEEEccCCCChhHHHH
Q psy2713           7 LVVALVGLPARGKTVLAH   24 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~   24 (143)
                      -+-+|-|++|+|||||+.
T Consensus        15 ~valffGLSGTGKTTLs~   32 (318)
T d1j3ba1          15 DVAVFFGLSGTGKTTLST   32 (318)
T ss_dssp             CEEEEEECTTSCHHHHTC
T ss_pred             CEEEEEccCCCCcccccc
Confidence            467999999999999874

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.50  E-value=0.0053  Score=39.27  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=17.1

Q ss_pred             EEEEccCCCChhHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .+++++.|||||.++..++..
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~   46 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEY   46 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEeCCCCcHHHHHHHHHHH
Confidence            578899999999987776643

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=95.41  E-value=0.0036  Score=43.67  Aligned_cols=18  Identities=39%  Similarity=0.547  Sum_probs=15.5

Q ss_pred             eEEEEEccCCCChhHHHH
Q psy2713           7 LVVALVGLPARGKTVLAH   24 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~   24 (143)
                      -+-+|-|++|+|||||+.
T Consensus        15 d~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          15 DVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             CEEEEECCTTSSHHHHHC
T ss_pred             CEEEEEccCCCCccccee
Confidence            356799999999999993

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=95.31  E-value=0.0074  Score=46.33  Aligned_cols=27  Identities=30%  Similarity=0.427  Sum_probs=24.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ....|++.|-+|||||+-++.+.++|.
T Consensus        85 ~~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          85 ENQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999998874

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.27  E-value=0.0034  Score=40.51  Aligned_cols=19  Identities=37%  Similarity=0.298  Sum_probs=15.8

Q ss_pred             EEEEEccCCCChhHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKL   26 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l   26 (143)
                      -+++++++|||||+++...
T Consensus        42 ~~il~apTGsGKT~~a~l~   60 (202)
T d2p6ra3          42 NLLLAMPTAAGKTLLAEMA   60 (202)
T ss_dssp             CEEEECSSHHHHHHHHHHH
T ss_pred             CEEEEcCCCCchhHHHHHH
Confidence            4789999999999987543

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=95.21  E-value=0.0078  Score=46.38  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=24.2

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ....|++.|-+|||||+-++.+.++|-
T Consensus        90 ~~Q~IiisGeSGaGKTe~~k~il~yL~  116 (710)
T d1br2a2          90 EDQSILCTGESGAGKTENTKKVIQYLA  116 (710)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            457899999999999999999998873

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.17  E-value=0.0063  Score=40.20  Aligned_cols=33  Identities=21%  Similarity=0.267  Sum_probs=23.9

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      -+++++++|||||+++...+..+...+.++.++
T Consensus        60 ~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv   92 (237)
T d1gkub1          60 SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVI   92 (237)
T ss_dssp             CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEE
T ss_pred             CEEEEecCCChHHHHHHHHHHHHHHhcCeEEEE
Confidence            467889999999998877665554455555555

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.08  E-value=0.007  Score=41.35  Aligned_cols=23  Identities=48%  Similarity=0.635  Sum_probs=20.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .+|-++|+.++||||+...|...
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHcCC
Confidence            48999999999999999998743

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.04  E-value=0.0094  Score=45.94  Aligned_cols=27  Identities=26%  Similarity=0.368  Sum_probs=24.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ....|++.|-+|||||+-++.+.++|.
T Consensus       124 ~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         124 QNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999998874

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=95.01  E-value=0.0097  Score=46.42  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=24.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      +...|++.|-+|||||+-++.+.++|.
T Consensus       122 ~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         122 ENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999998884

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=94.97  E-value=0.008  Score=38.52  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=19.0

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~   27 (143)
                      .-|.+.|-..+|||||...|.
T Consensus         6 inIaiiGhvd~GKSTL~~~L~   26 (195)
T d1kk1a3           6 VNIGMVGHVDHGKTTLTKALT   26 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEEeccCCcHHHHHHHHH
Confidence            458999999999999999995

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=94.94  E-value=0.01  Score=45.82  Aligned_cols=27  Identities=30%  Similarity=0.378  Sum_probs=24.1

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .+..|++.|-+|||||+-++.+.++|.
T Consensus        93 ~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          93 RNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999998873

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.92  E-value=0.015  Score=38.18  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=21.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..|.++|--++|||||+..|....+
T Consensus         4 iNi~viGHVd~GKTTL~~~Ll~~~g   28 (224)
T d1jnya3           4 LNLIVIGHVDHGKSTLVGRLLMDRG   28 (224)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHHB
T ss_pred             cEEEEEecCCCCHHHHHHHHHHHcC
Confidence            4599999999999999999865544

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=94.90  E-value=0.044  Score=37.24  Aligned_cols=22  Identities=23%  Similarity=0.193  Sum_probs=18.0

Q ss_pred             EEEEccCCCChhHHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      +.+.|.+|+|||+++..+....
T Consensus        70 ~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          70 ELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             CBEEESSSSSHHHHHHHHHHTC
T ss_pred             EeeccCCCCChHHHHHHHHhhh
Confidence            5678899999999998876543

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=94.88  E-value=0.011  Score=39.08  Aligned_cols=24  Identities=21%  Similarity=0.145  Sum_probs=20.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      -|+++|-..+||||++..|....+
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~g   34 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDSK   34 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHcC
Confidence            378899999999999999976554

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=94.61  E-value=0.0093  Score=40.43  Aligned_cols=36  Identities=14%  Similarity=0.104  Sum_probs=21.6

Q ss_pred             CCeEEEEEccCCCChhH-HHHHHHHHHccCCCCceeE
Q psy2713           5 TPLVVALVGLPARGKTV-LAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKST-la~~l~~~l~~~~~~~~~~   40 (143)
                      +...+++.+++|||||+ +.-.+.+.....+.++-++
T Consensus         8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi   44 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLIL   44 (305)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEE
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence            45678999999999996 3333333322224444444

>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide synthetase MurE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramyl tripeptide synthetase MurE
species: Escherichia coli [TaxId: 562]

Probab=94.58  E-value=0.011  Score=38.51  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=25.3

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .+|.++|-.  ||||.+..|++-|...+.++..+
T Consensus         6 ~vI~ITGT~--GKTTt~~~l~~iL~~~g~~~~~~   37 (234)
T d1e8ca3           6 RLVGVTGTN--GKTTTTQLLAQWSQLLGEISAVM   37 (234)
T ss_dssp             EEEEEESSS--CHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             eEEEEECCC--cHHHHHHHHHHHHHHCCCCeEEE
Confidence            566666653  99999999999998888777655

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.55  E-value=0.01  Score=40.69  Aligned_cols=20  Identities=20%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             EEEEEccCCCChhHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~   27 (143)
                      -|+++|-.+|||||+...|.
T Consensus        26 ~ivVvG~~ssGKSSliNaLl   45 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIV   45 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHh
Confidence            47888999999999999996

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=94.51  E-value=0.013  Score=45.61  Aligned_cols=27  Identities=26%  Similarity=0.305  Sum_probs=24.0

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ....|++.|-+|||||.-++.+.++|.
T Consensus       120 ~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         120 ENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999998874

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.49  E-value=0.011  Score=40.25  Aligned_cols=20  Identities=25%  Similarity=0.414  Sum_probs=18.2

Q ss_pred             EEEEEccCCCChhHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~   27 (143)
                      -|+++|-.+|||||+.+.|.
T Consensus        28 ~ivvvG~~SsGKSsliNaLl   47 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFV   47 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHh
Confidence            37788999999999999997

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=94.22  E-value=0.24  Score=28.71  Aligned_cols=27  Identities=30%  Similarity=0.340  Sum_probs=24.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWT   33 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~   33 (143)
                      .+|++.||..|=|||+|..|.+.+..+
T Consensus         1 tliilegpdccfkstvaaklskelkyp   27 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELKYP   27 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHTCC
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhcCc
Confidence            378999999999999999999998765

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.18  E-value=0.024  Score=37.73  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      ..|.++|...+||||++..|.-..+
T Consensus         7 iNi~iiGHvD~GKsTl~~~ll~~~g   31 (239)
T d1f60a3           7 INVVVIGHVDSGKSTTTGHLIYKCG   31 (239)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHcC
Confidence            5799999999999999999976654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=94.02  E-value=0.016  Score=38.71  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=20.4

Q ss_pred             EEEEEccCCCChhHHHHHHHHHHc
Q psy2713           8 VVALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .|.++|...+|||||+..|....+
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~~~g   49 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILFLTG   49 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHHHTT
T ss_pred             EEEEEeeCCCCHHHHHHHHHHHcC
Confidence            489999999999999999965443

>d1p3da3 c.72.2.1 (A:107-321) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.94  E-value=0.017  Score=37.29  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=22.9

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCcee
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV   39 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~   39 (143)
                      .+|.++|  -.||||....|+.-|...++++..
T Consensus        13 ~~I~ITG--TnGKTTt~~~l~~iL~~~~~~~~~   43 (215)
T d1p3da3          13 HGIAVAG--THGKTTTTAMISMIYTQAKLDPTF   43 (215)
T ss_dssp             EEEEEES--SSCHHHHHHHHHHHHHHTTCCCEE
T ss_pred             CEEEEEC--CCCHHHHHHHHHHHHHhCCCCceE
Confidence            4666666  349999999999888776666544

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.83  E-value=0.021  Score=36.91  Aligned_cols=23  Identities=26%  Similarity=0.147  Sum_probs=19.2

Q ss_pred             EEEEccCCCChhHHHHHHHHHHc
Q psy2713           9 VALVGLPARGKTVLAHKLSRYLT   31 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l~   31 (143)
                      .++.+++|+|||.++-.++..++
T Consensus        88 ~ll~~~tG~GKT~~a~~~~~~~~  110 (206)
T d2fz4a1          88 GCIVLPTGSGKTHVAMAAINELS  110 (206)
T ss_dssp             EEEEESSSTTHHHHHHHHHHHSC
T ss_pred             cEEEeCCCCCceehHHhHHHHhc
Confidence            45678999999999998887764

>d2jfga3 c.72.2.1 (A:94-297) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=93.52  E-value=0.024  Score=36.16  Aligned_cols=32  Identities=19%  Similarity=0.198  Sum_probs=24.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      .+|.++|-  .||||....|+.-|...+.++...
T Consensus        12 ~vI~VTGT--~GKTTt~~~l~~iL~~~g~~~~~~   43 (204)
T d2jfga3          12 PIVAITGS--NGKSTVTTLVGEMAKAAGVNVGVG   43 (204)
T ss_dssp             CEEEEECS--SSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEECC--CCHHHHHHHHHHHHHhcCCCcccC
Confidence            45655554  389999999999998777766554

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.021  Score=36.53  Aligned_cols=31  Identities=29%  Similarity=0.270  Sum_probs=22.5

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCcee
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV   39 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~   39 (143)
                      ++|.++|-  -||||.+..|+.-|...+..+..
T Consensus         3 kvI~VTGT--nGKTTt~~mi~~iL~~~g~~~~~   33 (214)
T d1gg4a4           3 RVVALTGS--SGKTSVKEMTAAILSQCGNTLYT   33 (214)
T ss_dssp             EEEEEECS--SCHHHHHHHHHHHHTTTSCEEEC
T ss_pred             CEEEEeCC--CcHHHHHHHHHHHHHhCCCCEEE
Confidence            45555554  28999999999999877765443

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.64  E-value=0.041  Score=38.58  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=22.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTW   32 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~   32 (143)
                      ..|.+.|..++|||||+..|....+.
T Consensus        18 RNI~iiGhvd~GKTTL~d~Ll~~~g~   43 (341)
T d1n0ua2          18 RNMSVIAHVDHGKSTLTDSLVQRAGI   43 (341)
T ss_dssp             EEEEEECCGGGTHHHHHHHHHHHHBC
T ss_pred             cEEEEEeCCCCcHHHHHHHHHHHCCC
Confidence            36999999999999999999876653

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.47  E-value=0.97  Score=30.48  Aligned_cols=22  Identities=23%  Similarity=0.154  Sum_probs=18.2

Q ss_pred             EEEEEccCCCChhHHHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      -+.+.|.+|+|||+++..++..
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            3667799999999999888754

>d2gc6a2 c.72.2.2 (A:1-296) Folylpolyglutamate synthetase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: Folylpolyglutamate synthetase
domain: Folylpolyglutamate synthetase
species: Lactobacillus casei [TaxId: 1582]

Probab=91.25  E-value=0.061  Score=36.61  Aligned_cols=34  Identities=15%  Similarity=0.245  Sum_probs=26.4

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV   42 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~   42 (143)
                      ++|.++|-.  ||||.+..|..-|...|+++..+..
T Consensus        40 kvI~VTGTN--GKtST~~~i~~IL~~~G~kvG~~tS   73 (296)
T d2gc6a2          40 RYIHVTGTN--GKGSAANAIAHVLEASGLTVGLYTA   73 (296)
T ss_dssp             CEEEEECSS--SHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEEeccC--cHHHHHHHHHHHHHhcCCceeeeec
Confidence            466666543  8999999999999888888877643

>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V beta chain (RecB), N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.53  E-value=0.097  Score=37.25  Aligned_cols=21  Identities=19%  Similarity=0.028  Sum_probs=16.2

Q ss_pred             eEEEEEccCCCChhHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~   27 (143)
                      ...++.+.+|||||+..-.-.
T Consensus        17 g~~lv~A~AGsGKT~~l~~r~   37 (485)
T d1w36b1          17 GERLIEASAGTGKTFTIAALY   37 (485)
T ss_dssp             SCEEEECCTTSCHHHHHHHHH
T ss_pred             CCeEEEEcCchHHHHHHHHHH
Confidence            467889999999998754443

>d1s1ma2 c.37.1.10 (A:1-266) CTP synthase PyrG, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=90.23  E-value=0.21  Score=33.45  Aligned_cols=44  Identities=18%  Similarity=0.288  Sum_probs=35.6

Q ss_pred             CCCeEEEEEc--cCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           4 FTPLVVALVG--LPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         4 ~~~~~i~l~G--~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      |..+.|+++|  .+|-||.-.|..|...|...|++...+..|.|.-
T Consensus         1 m~tkyifvtGGV~S~lGKGi~~aSig~llk~~g~~V~~~K~DPYlN   46 (266)
T d1s1ma2           1 MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYIN   46 (266)
T ss_dssp             CCCEEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECCSC
T ss_pred             CCceEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEeccccee
Confidence            3456666766  4777999999999999999999999888887643

>d2vo1a1 c.37.1.10 (A:1-273) CTP synthase PyrG, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.76  E-value=0.27  Score=32.99  Aligned_cols=40  Identities=15%  Similarity=0.287  Sum_probs=33.3

Q ss_pred             eEEEEEc--cCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713           7 LVVALVG--LPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR   46 (143)
Q Consensus         7 ~~i~l~G--~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~   46 (143)
                      +.|+++|  .+|-||...|..|...|...|+++..+..|.|.
T Consensus         2 KyifVtGGV~S~lGKGi~~aSig~ll~~~g~~V~~~K~DPYl   43 (273)
T d2vo1a1           2 KYILVTGGVISGIGKGIIASSVGTILKSCGLHVTSIKIDPYI   43 (273)
T ss_dssp             EEEEEEECSSSSSSHHHHHHHHHHHHHHTTCCEEEEEEECSS
T ss_pred             eEEEEeCCcccccchHHHHHHHHHHHHhCCceeEEEecccce
Confidence            3566777  678899999999999999999999888777663

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.63  E-value=0.44  Score=26.65  Aligned_cols=24  Identities=17%  Similarity=0.232  Sum_probs=21.4

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHH
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .+-|.|.|.-|+|-|.+|+.|.+.
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~   31 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNE   31 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHH
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhC
Confidence            467999999999999999998876

>d1vcoa2 c.37.1.10 (A:11-282) CTP synthase PyrG, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: CTP synthase PyrG, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=87.61  E-value=0.38  Score=32.22  Aligned_cols=41  Identities=20%  Similarity=0.322  Sum_probs=33.3

Q ss_pred             eEEEEEc--cCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713           7 LVVALVG--LPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR   47 (143)
Q Consensus         7 ~~i~l~G--~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~   47 (143)
                      +.|+++|  .+|-||...|..|...|...+++...+..|.|.-
T Consensus         3 kyifvtGGV~S~lGKGi~~asig~ll~~~g~~v~~~K~DpYlN   45 (272)
T d1vcoa2           3 KYVFITGGVVSSLGKGILTSSLGALLRARGYRVTAIKIDPYVN   45 (272)
T ss_dssp             EEEEEEECSSSCSCHHHHHHHHHHHHHTTTCCEEEEEEECSSC
T ss_pred             eEEEEeCCcccccccHHHHHHHHHHHHhCCCceeEEeecccee
Confidence            4555555  4677999999999999999999999998887643

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=87.18  E-value=0.32  Score=34.78  Aligned_cols=35  Identities=17%  Similarity=0.162  Sum_probs=26.0

Q ss_pred             eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      .-.++.|++|||||.+...+.+..+.   ++-++..+.
T Consensus        32 ~~q~l~GltGS~ka~~iA~l~~~~~r---p~LVVt~n~   66 (413)
T d1t5la1          32 KHQTLLGATGTGKTFTISNVIAQVNK---PTLVIAHNK   66 (413)
T ss_dssp             SEEEEEECTTSCHHHHHHHHHHHHTC---CEEEECSSH
T ss_pred             CcEEEeCCCCcHHHHHHHHHHHHhCC---CEEEEeCCH
Confidence            45678899999999999999988754   344554443

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=86.48  E-value=0.44  Score=30.07  Aligned_cols=34  Identities=24%  Similarity=0.288  Sum_probs=26.5

Q ss_pred             CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ++.+|.++|-  .||||.+..|+.-|...+.+...+
T Consensus        13 ~~~~iAITGT--nGKTTt~~~l~~iL~~~g~~~~~~   46 (207)
T d1j6ua3          13 KKEEFAVTGT--DGKTTTTAMVAHVLKHLRKSPTVF   46 (207)
T ss_dssp             CCCEEEEECS--SSHHHHHHHHHHHHHHTTCCCEEE
T ss_pred             CCCEEEEECC--CCHHHHHHHHHHHHHhCCCCCeEE
Confidence            4567888874  589999999999988777765554

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.2  Score=34.46  Aligned_cols=18  Identities=22%  Similarity=0.141  Sum_probs=15.7

Q ss_pred             CeEEEEEccCCCChhHHH
Q psy2713           6 PLVVALVGLPARGKTVLA   23 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla   23 (143)
                      -..|+..|..|||||+..
T Consensus        76 n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          76 NGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             CEEEEEECSTTSSHHHHH
T ss_pred             CcceeeecccCCCCceec
Confidence            357999999999999875

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.06  E-value=0.22  Score=34.35  Aligned_cols=17  Identities=24%  Similarity=0.149  Sum_probs=14.8

Q ss_pred             eEEEEEccCCCChhHHH
Q psy2713           7 LVVALVGLPARGKTVLA   23 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla   23 (143)
                      ..|+..|..|||||+.-
T Consensus        86 ~~i~aYGqTGSGKTyTm  102 (330)
T d1ry6a_          86 CSCFAYGQTGSGKTYTM  102 (330)
T ss_dssp             EEEEEECCTTSSHHHHH
T ss_pred             eEEEeeeccccccceee
Confidence            56899999999999874

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=83.97  E-value=0.26  Score=34.30  Aligned_cols=17  Identities=24%  Similarity=0.151  Sum_probs=14.5

Q ss_pred             eEEEEEccCCCChhHHH
Q psy2713           7 LVVALVGLPARGKTVLA   23 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla   23 (143)
                      ..|+..|.+|||||+..
T Consensus        81 ~ti~aYG~tgSGKT~Tm   97 (354)
T d1goja_          81 GTVFAYGQTGAGKSYTM   97 (354)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             eeEEecccCCCCcceee
Confidence            57999999999999653

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.92  E-value=0.12  Score=32.91  Aligned_cols=16  Identities=19%  Similarity=0.021  Sum_probs=13.4

Q ss_pred             EEEEEccCCCChhHHH
Q psy2713           8 VVALVGLPARGKTVLA   23 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla   23 (143)
                      -+++..++|||||.-.
T Consensus        40 dvii~a~TGSGKTlay   55 (209)
T d1q0ua_          40 SMVGQSQTGTGKTHAY   55 (209)
T ss_dssp             CEEEECCSSHHHHHHH
T ss_pred             CeEeecccccccceee
Confidence            4889999999999743

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=83.57  E-value=0.27  Score=34.36  Aligned_cols=17  Identities=24%  Similarity=0.315  Sum_probs=14.9

Q ss_pred             eEEEEEccCCCChhHHH
Q psy2713           7 LVVALVGLPARGKTVLA   23 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla   23 (143)
                      ..|+..|..|||||+.-
T Consensus        76 ~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          76 VCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             eeeeccccCCCCccccc
Confidence            47899999999999873

>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative DEAD box RNA helicase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=83.31  E-value=0.84  Score=28.92  Aligned_cols=23  Identities=13%  Similarity=-0.104  Sum_probs=18.2

Q ss_pred             eEEEEEccCCCChhHHHHHHHHH
Q psy2713           7 LVVALVGLPARGKTVLAHKLSRY   29 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla~~l~~~   29 (143)
                      .-+++..++|||||..+-...-.
T Consensus        43 ~d~iv~a~TGsGKT~~~~l~~~~   65 (208)
T d1hv8a1          43 YNIVAQARTGSGKTASFAIPLIE   65 (208)
T ss_dssp             SEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CCeeeechhcccccceeeccccc
Confidence            46789999999999988665543

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=83.09  E-value=0.12  Score=32.80  Aligned_cols=20  Identities=15%  Similarity=0.039  Sum_probs=15.9

Q ss_pred             EEEEEccCCCChhHHHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHKLS   27 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~l~   27 (143)
                      -++++-++|||||..+....
T Consensus        42 ~vlv~apTGsGKT~~~~~~~   61 (206)
T d1oywa2          42 DCLVVMPTGGGKSLCYQIPA   61 (206)
T ss_dssp             CEEEECSCHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCCCcchhhhhh
Confidence            47888999999998775544

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=82.57  E-value=0.94  Score=33.29  Aligned_cols=36  Identities=17%  Similarity=0.220  Sum_probs=29.9

Q ss_pred             CCeEEEEEcc----CCCChhHHHHHHHHHHccCCCCceeE
Q psy2713           5 TPLVVALVGL----PARGKTVLAHKLSRYLTWTDHKSKVF   40 (143)
Q Consensus         5 ~~~~i~l~G~----pGsGKSTla~~l~~~l~~~~~~~~~~   40 (143)
                      ..++|++++.    .|-||||.+-.|++.|+..+.++.+-
T Consensus        50 ~gklilVTaitPTp~GEGKtTttiGL~~aL~~lgk~~~~~   89 (549)
T d1eg7a_          50 DGKLILVTAITPTPAGEGKTTTSVGLTDALARLGKRVMVC   89 (549)
T ss_dssp             CCEEEEEEESSCCTTCCCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEEEeCCCCCCCCCcceeHHhHHHHHHHhCCceEEE
Confidence            3478999984    68899999999999998888877654

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=82.53  E-value=0.32  Score=33.73  Aligned_cols=17  Identities=18%  Similarity=0.266  Sum_probs=15.3

Q ss_pred             eEEEEEccCCCChhHHH
Q psy2713           7 LVVALVGLPARGKTVLA   23 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla   23 (143)
                      ..|+.+|..|||||+..
T Consensus        88 ~ti~aYGqTgSGKT~Tm  104 (349)
T d2zfia1          88 VCIFAYGQTGAGKSYTM  104 (349)
T ss_dssp             EEEEEECSTTSSHHHHH
T ss_pred             ceeeeeccCCCCCceee
Confidence            57999999999999875

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.47  E-value=0.32  Score=34.04  Aligned_cols=16  Identities=25%  Similarity=0.347  Sum_probs=14.2

Q ss_pred             eEEEEEccCCCChhHH
Q psy2713           7 LVVALVGLPARGKTVL   22 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTl   22 (143)
                      ..|+..|..|||||+.
T Consensus       126 ~ti~aYGqtGSGKT~T  141 (368)
T d2ncda_         126 ICIFAYGQTGSGKTYT  141 (368)
T ss_dssp             EEEEEECSTTSSHHHH
T ss_pred             eeEEeeccCCCccceE
Confidence            4799999999999965

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.00  E-value=0.37  Score=33.65  Aligned_cols=34  Identities=24%  Similarity=0.075  Sum_probs=20.6

Q ss_pred             eEEEEEc--cCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713           7 LVVALVG--LPARGKTVLAHKLSRYLTWTDHKSKVFSVS   43 (143)
Q Consensus         7 ~~i~l~G--~pGsGKSTla~~l~~~l~~~~~~~~~~~~d   43 (143)
                      ....++|  ||+||||.+|...-   ...|.++..+.-|
T Consensus        17 ~~~yvaaAFPSaCGKTnlAMl~p---~~pGwkv~~vGDD   52 (363)
T d1khba1          17 EKKYLAAAFPSACGKTNLAMMNP---SLPGWKVECVGDD   52 (363)
T ss_dssp             CEEEEEEECCTTSCHHHHHTCCC---CSTTCEEEEEESS
T ss_pred             CEEEEEEecCccccchhHHHhCC---CCCCcEEEEecCc
Confidence            4555665  78999999998432   2335544444333

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=81.95  E-value=0.34  Score=33.50  Aligned_cols=17  Identities=24%  Similarity=0.253  Sum_probs=14.5

Q ss_pred             eEEEEEccCCCChhHHH
Q psy2713           7 LVVALVGLPARGKTVLA   23 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla   23 (143)
                      ..|+..|..|||||+.-
T Consensus        82 ~~i~aYGqtgSGKTyTm   98 (345)
T d1x88a1          82 CTIFAYGQTGTGKTFTM   98 (345)
T ss_dssp             EEEEEEECTTSSHHHHH
T ss_pred             ceEEeeeeccccceEEe
Confidence            57999999999999653

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=81.80  E-value=0.35  Score=33.40  Aligned_cols=18  Identities=22%  Similarity=0.283  Sum_probs=15.4

Q ss_pred             CeEEEEEccCCCChhHHH
Q psy2713           6 PLVVALVGLPARGKTVLA   23 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla   23 (143)
                      ...|+..|..|||||+..
T Consensus        83 n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          83 NVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             CEEEEEECCTTSSHHHHH
T ss_pred             ccceeeeeccCCcccccc
Confidence            357999999999999765

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.61  E-value=0.33  Score=30.85  Aligned_cols=16  Identities=19%  Similarity=0.054  Sum_probs=13.2

Q ss_pred             EEEEEccCCCChhHHH
Q psy2713           8 VVALVGLPARGKTVLA   23 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla   23 (143)
                      =+++.+++|||||.-.
T Consensus        40 dvi~~a~tGsGKTlay   55 (206)
T d1s2ma1          40 DILARAKNGTGKTAAF   55 (206)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CEEEecCCcchhhhhh
Confidence            3889999999999543

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=81.43  E-value=0.37  Score=33.67  Aligned_cols=17  Identities=24%  Similarity=0.157  Sum_probs=14.5

Q ss_pred             eEEEEEccCCCChhHHH
Q psy2713           7 LVVALVGLPARGKTVLA   23 (143)
Q Consensus         7 ~~i~l~G~pGsGKSTla   23 (143)
                      ..|+.+|..|||||+..
T Consensus       115 ~tifaYGqTGSGKTyTm  131 (362)
T d1v8ka_         115 ATCFAYGQTGSGKTHTM  131 (362)
T ss_dssp             EEEEEEESTTSSHHHHH
T ss_pred             ceEEeeccCCCCCceee
Confidence            46889999999999664

>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Thermus thermophilus [TaxId: 274]

Probab=81.41  E-value=0.85  Score=32.37  Aligned_cols=36  Identities=28%  Similarity=0.306  Sum_probs=27.1

Q ss_pred             CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713           6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA   44 (143)
Q Consensus         6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~   44 (143)
                      ...+.+.|++||+||.+...|.+.++.+   .-++..+.
T Consensus        28 ~~~~~L~GlsgS~ka~~~A~l~~~~~rp---~LvVt~~~   63 (408)
T d1c4oa1          28 ERFVTLLGATGTGKTVTMAKVIEALGRP---ALVLAPNK   63 (408)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHHHTCC---EEEEESSH
T ss_pred             CCcEEEecCCCCHHHHHHHHHHHHhCCC---EEEEeCCH
Confidence            3467899999999999999999887643   34554443

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.30  E-value=0.34  Score=30.90  Aligned_cols=16  Identities=25%  Similarity=0.123  Sum_probs=13.1

Q ss_pred             EEEEEccCCCChhHHH
Q psy2713           8 VVALVGLPARGKTVLA   23 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla   23 (143)
                      =+++..++|||||.-.
T Consensus        40 dvl~~A~TGsGKTla~   55 (207)
T d1t6na_          40 DVLCQAKSGMGKTAVF   55 (207)
T ss_dssp             CEEEECCTTSCHHHHH
T ss_pred             CeEEEecccccccccc
Confidence            4889999999997543

>d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: DNA helicase UvsW
domain: DNA helicase UvsW
species: Bacteriophage T4 [TaxId: 10665]

Probab=81.28  E-value=0.48  Score=31.80  Aligned_cols=22  Identities=23%  Similarity=0.347  Sum_probs=17.7

Q ss_pred             EEEEccCCCChhHHHHHHHHHH
Q psy2713           9 VALVGLPARGKTVLAHKLSRYL   30 (143)
Q Consensus         9 i~l~G~pGsGKSTla~~l~~~l   30 (143)
                      .++.-+.|+|||-++-.+++.+
T Consensus       131 ~il~~pTGsGKT~i~~~i~~~~  152 (282)
T d1rifa_         131 RILNLPTSAGRSLIQALLARYY  152 (282)
T ss_dssp             EEECCCTTSCHHHHHHHHHHHH
T ss_pred             ceeEEEcccCccHHHHHHHHHh
Confidence            3556699999999998888665

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.75  E-value=0.33  Score=31.32  Aligned_cols=17  Identities=24%  Similarity=0.092  Sum_probs=14.3

Q ss_pred             EEEEEccCCCChhHHHH
Q psy2713           8 VVALVGLPARGKTVLAH   24 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~   24 (143)
                      -+++..++|||||...-
T Consensus        51 dvl~~a~TGsGKTlayl   67 (218)
T d2g9na1          51 DVIAQAQSGTGKTATFA   67 (218)
T ss_dssp             CEEEECCTTSSHHHHHH
T ss_pred             CEEEEcccchhhhhhhh
Confidence            47889999999997664

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.24  E-value=0.38  Score=30.84  Aligned_cols=18  Identities=22%  Similarity=-0.010  Sum_probs=14.7

Q ss_pred             EEEEEccCCCChhHHHHH
Q psy2713           8 VVALVGLPARGKTVLAHK   25 (143)
Q Consensus         8 ~i~l~G~pGsGKSTla~~   25 (143)
                      -+++..++|||||...-.
T Consensus        49 dvl~~a~TGsGKT~a~~l   66 (212)
T d1qdea_          49 DVLAQAQSGTGKTGTFSI   66 (212)
T ss_dssp             CEEEECCTTSSHHHHHHH
T ss_pred             CEEeecccccchhhhhHh
Confidence            488999999999985543