Psyllid ID: psy274

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------
Protein Sequence
MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATIDVV
Secondary Structure (PSIPRED)
ccccHHHHHHccccccccHHHccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccEEEEccEEEccccHHHHHHHHHHcccEEEEEEcccccEEccccEEEcccccccccccEEEEEEEccccccccEEEEEcccccccccccEEEEEccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccEcHHHHHHHcccccHHHcccHHHHHHHHHHccccccHcccccEEccccccccEcccccccEcEEEEEEccccHHHHHHHHHHHccEEEEEcHHHcccccccEEcccHHHHccccccEEEEEEEEEEEccEEEEEEEccEcccccEccEEEEEccccccccccccEEEEEccc
Coil and Loop (DISEMBL)
mlegqyaiktgklveFSKSQLVECAkqcsgcggcdgleqpieythqaglesekdypyrngngekfkcaydkskvklftgkdflyfngSETMKKILYkygplsvglnghlihfyngtpikkndeicspnaIGHAVLLVGygkqddipywlarnswgpigpdegffkiergnnacgietiagyatidvv
Flexible Loop (DISEMBL)
mlegqyaiktgklveFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIEtiagyatidvv
Low Complexity Region (SEG)
MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATIDVV
Disordered region (IsUnstruct)
*****YAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLE**KDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATID**
Disordered Region (DISOPRED)
MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATIDVV
Disordered Region (DISEMBL)
MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATIDVV
Disordered Region (DISPRO)
MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATIDV*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATIDVV
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	187	2.2.26 [Sep-21-2011]
Q9VN93	614	Putative cysteine protein	yes	N/A	0.951	0.289	0.343	2e-26
Q9UBX1	484	Cathepsin F OS=Homo sapie	yes	N/A	0.967	0.373	0.331	3e-23
Q91BH1	337	Viral cathepsin OS=Spodop	N/A	N/A	0.877	0.486	0.348	4e-23
Q8V5U0	367	Viral cathepsin OS=Heliot	N/A	N/A	0.930	0.474	0.317	8e-23
P56203	371	Cathepsin W OS=Mus muscul	yes	N/A	0.973	0.490	0.301	1e-22
Q8QLK1	337	Viral cathepsin OS=Mamest	N/A	N/A	0.925	0.513	0.351	2e-22
O46427	335	Pro-cathepsin H OS=Sus sc	no	N/A	0.914	0.510	0.363	2e-22
Q91GE3	323	Viral cathepsin OS=Epiphy	N/A	N/A	0.941	0.544	0.352	3e-22
O10364	324	Viral cathepsin OS=Orgyia	N/A	N/A	0.882	0.509	0.309	5e-22
Q3T0I2	335	Pro-cathepsin H OS=Bos ta	no	N/A	0.914	0.510	0.363	1e-21

>sp|Q9VN93|CPR1_DROME Putative cysteine proteinase CG12163 OS=Drosophila melanogaster GN=CG12163 PE=2 SV=2

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 66/192 (34%), Positives = 108/192 (56%), Gaps = 14/192 (7%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG--CDGLEQPIEYTHQAGLESEKDYPYRN 59
           +EG YA+KTG+L EFS+ +L++C    S C G   D   + I+     GLE E +YPY+ 
Sbjct: 427 IEGLYAVKTGELKEFSEQELLDCDTTDSACNGGLMDNAYKAIKDI--GGLEYEAEYPYK- 483

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHFYNGTPI 118
              +K +C ++++   +          G+ET M++ L   GP+S+G+N + + FY G   
Sbjct: 484 --AKKNQCHFNRTLSHVQVAGFVDLPKGNETAMQEWLLANGPISIGINANAMQFYRGGVS 541

Query: 119 KKNDEICSPNAIGHAVLLVGYGKQD------DIPYWLARNSWGPIGPDEGFFKIERGNNA 172
                +CS   + H VL+VGYG  D       +PYW+ +NSWGP   ++G++++ RG+N 
Sbjct: 542 HPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGDNT 601

Query: 173 CGIETIAGYATI 184
           CG+  +A  A +
Sbjct: 602 CGVSEMATSAVL 613

May have a role in autophagic cell death.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: -

>sp|Q9UBX1|CATF_HUMAN Cathepsin F OS=Homo sapiens GN=CTSF PE=1 SV=1

 Score =  108 bits (269), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 95/184 (51%), Gaps = 3/184 (1%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EGQ+ +  G L+  S+ +L++C K    C G           +  GLE+E DY Y+   
Sbjct: 304 VEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQ--- 360

Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKN 121
           G    C +   K K++           + +   L K GP+SV +N   + FY     +  
Sbjct: 361 GHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPL 420

Query: 122 DEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181
             +CSP  I HAVLLVGYG + D+P+W  +NSWG    ++G++ + RG+ ACG+ T+A  
Sbjct: 421 RPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 480

Query: 182 ATID 185
           A +D
Sbjct: 481 AVVD 484

Thiol protease which is believed to participate in intracellular degradation and turnover of proteins. Has also been implicated in tumor invasion and metastasis.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 4

EC: 1

>sp|Q91BH1|CATV_NPVST Viral cathepsin OS=Spodoptera litura multicapsid nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score =  107 bits (268), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 62/178 (34%), Positives = 97/178 (54%), Gaps = 14/178 (7%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAGLESEKDYPYRN 59
           +E QYAI    L++ S+ QL++C +   GC G  GL      E     G+E E DYPY+ 
Sbjct: 159 IESQYAIMHDSLIDLSEQQLLDCDRVDQGCDG--GLMHLAFQEIIRIGGVEHEIDYPYQ- 215

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLY-FNGSETMKKILYKYGPLSVGLN-GHLIHFYNGTP 117
             G ++ C    SK+ +     + Y       + ++LYK GP++V ++   +I + +G  
Sbjct: 216 --GIEYACRLAPSKLAVRLSHCYQYDLRDERKLLELLYKNGPIAVAIDCVDIIDYRSGIA 273

Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGI 175
                 +C+ N + HAVLLVGYG ++D PYW+ +NSWG    + G+F+  R  NACG+
Sbjct: 274 -----TVCNDNGLNHAVLLVGYGIENDTPYWIFKNSWGSNWGENGYFRARRNINACGM 326

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q8V5U0|CATV_NPVHZ Viral cathepsin OS=Heliothis zea nuclear polyhedrosis virus GN=VCATH PE=3 SV=1

 Score =  106 bits (265), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 59/186 (31%), Positives = 100/186 (53%), Gaps = 12/186 (6%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAGLESEKDYPYRN 59
           +E QYAI+  KL++ S+ QL++C +   GC G  GL      E     G+E+E DYPY+ 
Sbjct: 189 IESQYAIRHNKLIDLSEQQLLDCDEVDLGCNG--GLMHLAFQELLLMGGVETEADYPYQ- 245

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLY-FNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPI 118
             G +  C  D  K+ +     F Y       +K+++Y  GP+++ ++   I  Y    +
Sbjct: 246 --GSEQMCTLDNRKIAVKLNSCFKYDIRDENKLKELVYTTGPVAIAVDAMDIINYRRGIL 303

Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETI 178
            +    C    + HAVLL+G+G ++++PYW+ +NSWG    + GF ++ R  NACG+   
Sbjct: 304 NQ----CHIYDLNHAVLLIGWGIENNVPYWIIKNSWGEDWGENGFLRVRRNVNACGLLNE 359

Query: 179 AGYATI 184
            G +++
Sbjct: 360 FGASSV 365

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|P56203|CATW_MOUSE Cathepsin W OS=Mus musculus GN=Ctsw PE=2 SV=2

 Score =  105 bits (263), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 61/202 (30%), Positives = 104/202 (51%), Gaps = 20/202 (9%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           ++  + IK  + V+ S  +L++C +  +GC G    +  +   + +GL SEKDYP++ G+
Sbjct: 160 IQALWRIKHQQFVDVSVQELLDCERCGNGCNGGFVWDAYLTVLNNSGLASEKDYPFQ-GD 218

Query: 62  GEKFKCAYDKSKVKLFTGKDF-LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
            +  +C   K K K+   +DF +  N  + +   L  +GP++V +N  L+  Y    IK 
Sbjct: 219 RKPHRCLAKKYK-KVAWIQDFTMLSNNEQAIAHYLAVHGPITVTINMKLLQHYQKGVIKA 277

Query: 121 NDEICSPNAIGHAVLLVGYGKQDD-----------------IPYWLARNSWGPIGPDEGF 163
               C P  + H+VLLVG+GK+ +                  PYW+ +NSWG    ++G+
Sbjct: 278 TPSSCDPRQVDHSVLLVGFGKEKEGMQTGTVLSHSRKRRHSSPYWILKNSWGAHWGEKGY 337

Query: 164 FKIERGNNACGIETIAGYATID 185
           F++ RGNN CG+      A +D
Sbjct: 338 FRLYRGNNTCGVTKYPFTAQVD 359

May have a specific function in the mechanism or regulation of T-cell cytolytic activity.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: -

>sp|Q8QLK1|CATV_NPVMC Viral cathepsin OS=Mamestra configurata nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 66/188 (35%), Positives = 98/188 (52%), Gaps = 15/188 (7%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAGLESEKDYPYRN 59
           LE QYAIK  +L++ ++ QLV+C     GC G  GL      +  H  G+E E DYPY+ 
Sbjct: 159 LESQYAIKYDRLIDLAEQQLVDCDFVDMGCDG--GLIHTAYEQIMHIGGVEQEYDYPYK- 215

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLNG-HLIHFYNGTP 117
               +  CA    K  +     + Y   SE  ++ +L   GP+++ ++   L  +Y G  
Sbjct: 216 --AVRLPCAVKPHKFAVGVRNCYRYVLLSEERLEDLLRHVGPIAIAVDAVDLTDYYGGVI 273

Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACG-IE 176
                  C  N + HAVLLVGYG ++++PYW  +NSWG    + G+ +I RG N+CG I 
Sbjct: 274 -----SFCENNGLNHAVLLVGYGIENNVPYWTIKNSWGSDYGENGYVRIRRGVNSCGMIN 328

Query: 177 TIAGYATI 184
            +A  A I
Sbjct: 329 ELASSAQI 336

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Mamestra configurata (taxid: 174822)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|O46427|CATH_PIG Pro-cathepsin H OS=Sus scrofa GN=CTSH PE=1 SV=1

 Score =  105 bits (262), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 19/190 (10%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYT-HQAGLESEKDYPYRN 59
           LE   AI TGK++  ++ QLV+CA+  +  G   GL  Q  EY  +  G+  E  YPY+ 
Sbjct: 150 LESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK- 208

Query: 60  GNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGL---NGHLIH--- 111
             G+   C +   K   F  KD   +  N  E M + +  Y P+S      N  L++   
Sbjct: 209 --GQDDHCKFQPDKAIAFV-KDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKG 265

Query: 112 FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            Y+ T   K     +P+ + HAVL VGYG+++ IPYW+ +NSWGP     G+F IERG N
Sbjct: 266 IYSSTSCHK-----TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKN 320

Query: 172 ACGIETIAGY 181
            CG+   A Y
Sbjct: 321 MCGLAACASY 330

Important for the overall degradation of proteins in lysosomes.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 6

>sp|Q91GE3|CATV_NPVEP Viral cathepsin OS=Epiphyas postvittana nucleopolyhedrovirus GN=VCATH PE=3 SV=1

 Score =  104 bits (260), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 66/187 (35%), Positives = 99/187 (52%), Gaps = 11/187 (5%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIE-YTHQAGLESEKDYPYRNG 60
           LE Q+AI   +L+  S+ Q+++C     GC G   L    E      G++ E DYPY + 
Sbjct: 145 LESQFAIAHDRLINLSEQQMIDCDSVDVGCEG-GLLHTAFEAIISMGGVQIENDYPYESS 203

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNG-SETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
           N     C  D +K  +   +   Y     E +K +L   GP+ V ++   I  Y    IK
Sbjct: 204 NN---YCRMDPTKFVVGVKQCNRYITIYEEKLKDVLRLAGPIPVAIDASDILNYEQGIIK 260

Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET-I 178
                C+ N + HAVLLVGYG ++++PYW+ +NSWG    ++GFFKI++  NACGI+  +
Sbjct: 261 ----YCANNGLNHAVLLVGYGVENNVPYWILKNSWGTDWGEQGFFKIQQNVNACGIKNEL 316

Query: 179 AGYATID 185
           A  A I+
Sbjct: 317 ASTAEIN 323

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Lepidoptera (taxid: 7088)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|O10364|CATV_NPVOP Viral cathepsin OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=VCATH PE=3 SV=1

 Score =  103 bits (258), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 100/181 (55%), Gaps = 16/181 (8%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYR 58
           LE Q+AIK  +L+  S+ Q ++C +  +GC G       E  +E     G++ E DYPY 
Sbjct: 146 LESQFAIKYNRLINLSEQQFIDCDRVNAGCDGGLLHTAFESAME---MGGVQMESDYPYE 202

Query: 59  NGNGEKFKCAYDKSK--VKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             NG+   C  + ++  V + + + ++     E +K +L   GP+ V ++   I  Y   
Sbjct: 203 TANGQ---CRINPNRFVVGVRSCRRYIVM-FEEKLKDLLRAVGPIPVAIDASDIVNYRRG 258

Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIE 176
            +++    C+ + + HAVLLVGY  +++IPYW+ +N+WG    ++G+F++++  NACGI 
Sbjct: 259 IMRQ----CANHGLNHAVLLVGYAVENNIPYWILKNTWGTDWGEDGYFRVQQNINACGIR 314

Query: 177 T 177
            
Sbjct: 315 N 315

Cysteine protease that plays an essential role in host liquefaction to facilitate horizontal transmission of the virus. May participate in the degradation of foreign protein expressed by the baculovirus system.

Orgyia pseudotsugata (taxid: 33414)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 5

EC: 0

>sp|Q3T0I2|CATH_BOVIN Pro-cathepsin H OS=Bos taurus GN=CTSH PE=2 SV=1

 Score =  102 bits (255), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 19/190 (10%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYT-HQAGLESEKDYPYRN 59
           LE   AI TGKL   ++ QLV+CA+  +  G   GL  Q  EY  +  G+  E  YPYR 
Sbjct: 150 LESAVAIATGKLPFLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYRG 209

Query: 60  GNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVG--LNGHLIHF--- 112
            +G+   C Y  SK   F  KD   +  N  E M + +  + P+S    +    + +   
Sbjct: 210 QDGD---CKYQPSKAIAFV-KDVANITLNDEEAMVEAVALHNPVSFAFEVTADFMMYRKG 265

Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            Y+ T   K     +P+ + HAVL VGYG++  IPYW+ +NSWGP    +G+F IERG N
Sbjct: 266 IYSSTSCHK-----TPDKVNHAVLAVGYGEEKGIPYWIVKNSWGPNWGMKGYFLIERGKN 320

Query: 172 ACGIETIAGY 181
            CG+   A +
Sbjct: 321 MCGLAACASF 330

Important for the overall degradation of proteins in lysosomes.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 2

EC: .

EC: 1

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
156389068	276	predicted protein [Nematostella vectensi	0.967	0.655	0.385	4e-30
156546466	1036	PREDICTED: hypothetical protein LOC10012	0.951	0.171	0.371	1e-29
324522685	308	Cathepsin L, partial [Ascaris suum]	0.967	0.587	0.391	6e-29
260234113	2676	cysteine proteinase inhibitor precursor	0.951	0.066	0.356	7e-29
67773380	322	cysteine protease 9 [Paragonimus westerm	0.951	0.552	0.405	3e-28
244790097	586	cathepsin F isoform 2 precursor [Acyrtho	0.973	0.310	0.366	3e-28
56718881	322	westerpain-1 [Paragonimus westermani]	0.962	0.559	0.387	3e-28
633096	245	prepro NTP [Paragonimus westermani]	0.962	0.734	0.387	1e-27
67773370	321	cysteine protease 3 [Paragonimus westerm	0.962	0.560	0.377	1e-27
67773374	325	cysteine protease 6 [Paragonimus westerm	0.946	0.544	0.365	2e-27

>gi|156389068|ref|XP_001634814.1| predicted protein [Nematostella vectensis] gi|156221901|gb|EDO42751.1| predicted protein [Nematostella vectensis]

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 71/184 (38%), Positives = 105/184 (57%), Gaps = 3/184 (1%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EGQYAIKTGKLV  S+ +LV+C     GC G        +     GLESE DYPY+   
Sbjct: 96  IEGQYAIKTGKLVSLSEQELVDCDTIDKGCEGGLPSNAYKQIEKLGGLESESDYPYK--- 152

Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKN 121
           G   KC ++K++VK+      +     + +   L K GP+S+G+N + + FY G      
Sbjct: 153 GADSKCKFNKAEVKVTINSSVVISKDEKEIAAWLAKNGPISIGINANAMQFYMGGIAHPW 212

Query: 122 DEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181
              C+P+++ H VL+VGYG ++  PYW+ +NSWGP   ++G++ I RG   CG+ T+   
Sbjct: 213 KIFCNPSSLNHGVLIVGYGVKNGTPYWIIKNSWGPSWGEKGYYLIYRGGGCCGLNTMCTS 272

Query: 182 ATID 185
           A ID
Sbjct: 273 AVID 276

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|156546466|ref|XP_001607324.1| PREDICTED: hypothetical protein LOC100123649 [Nasonia vitripennis]

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 71/191 (37%), Positives = 109/191 (57%), Gaps = 13/191 (6%)

Query: 2    LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGC--DGLEQPIEYTHQAGLESEKDYPYRN 59
            +EGQYAIK G+L+  S+ +LV+C K  SGC G   D   + IE     GLE E DYPY  
Sbjct: 850  IEGQYAIKHGELLSLSEQELVDCDKLDSGCNGGLPDTAYRAIE--ELGGLELESDYPY-- 905

Query: 60   GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
             + E  KC ++K+KVK+         +    M + L K GP+S+G+N + + FY G    
Sbjct: 906  -DAEDEKCHFNKNKVKVNIVSGLNITSNETQMAQWLVKNGPMSIGINANAMQFYMGGVSH 964

Query: 120  KNDEICSPNAIGHAVLLVGYGK------QDDIPYWLARNSWGPIGPDEGFFKIERGNNAC 173
                +CSP+++ H VL+VGYG       +  +PYW+ +NSWGP   ++G++++ RG+  C
Sbjct: 965  PFKFLCSPDSLDHGVLIVGYGVKFYPIFKKTMPYWIIKNSWGPRWGEQGYYRVYRGDGTC 1024

Query: 174  GIETIAGYATI 184
            G+  +   A +
Sbjct: 1025 GVNKMVTSAVV 1035

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324522685|gb|ADY48108.1| Cathepsin L, partial [Ascaris suum]

 Score =  132 bits (332), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 72/184 (39%), Positives = 99/184 (53%), Gaps = 3/184 (1%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EG +AIKT KLV  S+ +LV+C     GC G        E     GLE+E DYPY +G 
Sbjct: 128 IEGAWAIKTSKLVSLSEQELVDCDIIDQGCNGGLPSNAYREIIRMGGLEAESDYPY-DGR 186

Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKN 121
           GEK  C   K  + ++        +  E M   L   GP+S+GLN + + FY        
Sbjct: 187 GEK--CHLMKKDIAVYINDSLQLPHDEEKMAAWLVAKGPISIGLNANPLQFYRHGIAHPW 244

Query: 122 DEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181
              CSP  + H VL+VGYG + D PYW+ +NSWG    +EG+F++ RG N CGI+ +A  
Sbjct: 245 RVFCSPKHLDHGVLIVGYGSETDKPYWIIKNSWGTKWGEEGYFRLFRGKNVCGIQEMATT 304

Query: 182 ATID 185
           A I+
Sbjct: 305 AIIE 308

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|260234113|dbj|BAI44279.1| cysteine proteinase inhibitor precursor [Manduca sexta] gi|261336196|dbj|BAH59606.2| cysteine proteinase inhibitor precursor [Manduca sexta]

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 13/191 (6%)

Query: 2    LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGC--DGLEQPIEYTHQAGLESEKDYPYRN 59
            +EGQ+ +KTG LV  S+ +LV+C K   GC G   D   + IE     GLESE DYPY  
Sbjct: 2491 IEGQWKMKTGDLVSLSEQELVDCDKLDQGCNGGLPDNAYRAIE--QLGGLESEDDYPYE- 2547

Query: 60   GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
              G   KC+++K+  ++         +    M K L K+GP+S+G+N + + FY G    
Sbjct: 2548 --GSDDKCSFNKTLARVQISGAVNITSNETDMAKWLVKHGPISIGINANAMQFYMGGISH 2605

Query: 120  KNDEICSPNAIGHAVLLVGYGKQD------DIPYWLARNSWGPIGPDEGFFKIERGNNAC 173
                +C+P+ + H VL+VGYG +D       +PYW+ +NSWG    ++G++++ RG+  C
Sbjct: 2606 PWRMLCNPSNLDHGVLIVGYGAKDYPLFHKHLPYWIIKNSWGTSWGEQGYYRVYRGDGTC 2665

Query: 174  GIETIAGYATI 184
            G+  +A  A +
Sbjct: 2666 GVNQMASSAVV 2676

Source: Manduca sexta

Species: Manduca sexta

Genus: Manduca

Family: Sphingidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|67773380|gb|AAY81947.1| cysteine protease 9 [Paragonimus westermani]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/185 (40%), Positives = 101/185 (54%), Gaps = 7/185 (3%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EGQ+ IKTG+LV  SK QLV+C +   GC G   +   +E  H  GLESE DYPY    
Sbjct: 141 VEGQWFIKTGQLVSLSKQQLVDCDRVAEGCNGGWPVSSYLEIKHMGGLESESDYPYV--- 197

Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGS--ETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
           G +  CA +K K  L    D L   G+  E     L ++GPLS  LN   +  Y    + 
Sbjct: 198 GAEQTCALNKEK--LLAKIDDLIVLGAYEEEHAAYLAEHGPLSTLLNAVALQHYQSGVLN 255

Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIA 179
              E C    + HAVL VGY K+ D+PYW+ +NSWG    ++G+F++ RG+  CGI  +A
Sbjct: 256 PTYEECPDTELNHAVLTVGYDKEGDMPYWIIKNSWGTDWGEKGYFRLFRGDYTCGINRMA 315

Query: 180 GYATI 184
             A I
Sbjct: 316 TSAII 320

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|244790097|ref|NP_001156454.1| cathepsin F isoform 2 precursor [Acyrthosiphon pisum]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 108/191 (56%), Gaps = 9/191 (4%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           +EGQYA+K+ +L+  S+ +L++C    +GCGG   + Q  E      GLE+E DYPY  G
Sbjct: 398 IEGQYALKSKELLSLSEQELIDCDNLDNGCGG-GLMTQAFEAVENLGGLETESDYPYE-G 455

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
           + ++  C   KS VK+   K        E + K L K+GPLSVG+N + + FY G     
Sbjct: 456 HADRKGCQLKKSDVKVSISKAVNVSTDEEDIAKFLVKHGPLSVGVNANAMQFYMGGVSHP 515

Query: 121 NDEICSPNAIGHAVLLVGYG------KQDDIPYWLARNSWGPIGPDEGFFKIERGNNACG 174
              +CSP ++ H V +VGYG         ++PYWL +NSWGP   ++G++ + RG+ +CG
Sbjct: 516 IHALCSPKSLDHGVAIVGYGVHRTKYTHKNLPYWLIKNSWGPGWGEKGYYLLYRGDGSCG 575

Query: 175 IETIAGYATID 185
           +  +   A I+
Sbjct: 576 VNQMVSSAIIE 586

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56718881|gb|AAW28151.1| westerpain-1 [Paragonimus westermani]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 99/183 (54%), Gaps = 3/183 (1%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EGQ+ IKTG+LV  SK QLV+C +   GC G       +E  +  GLESE DYPY    
Sbjct: 141 VEGQWFIKTGQLVSLSKQQLVDCDRAAQGCNGGWPASSYLEIMYMGGLESESDYPYV--- 197

Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKN 121
           G +  CA +K K+        +     E     L ++GPLS  LN   + +Y    +K  
Sbjct: 198 GVEQTCALNKEKLVAKIDDSIVLGPEEEDHAAYLAEHGPLSTLLNAVALQYYQSGVLKPT 257

Query: 122 DEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181
            E C    + HAVL VGY K+ D+PYW+ +NSWG    ++G+F++ RG+  CGI  +A  
Sbjct: 258 FEECPDTELNHAVLTVGYDKEGDMPYWIIKNSWGTDWGEKGYFRLFRGDCTCGINRMATS 317

Query: 182 ATI 184
           A I
Sbjct: 318 AII 320

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|633096|dbj|BAA04664.1| prepro NTP [Paragonimus westermani]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 71/183 (38%), Positives = 98/183 (53%), Gaps = 3/183 (1%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EGQ+ IKTG+LV  SK QLV+C     GC G       +E  +  GLESE DYPY    
Sbjct: 64  VEGQWFIKTGQLVSLSKQQLVDCDMAAEGCNGGWPASSYLEIMYMGGLESESDYPYV--- 120

Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKN 121
           G +  CA +K K+        +     E     L ++GPLS  LN   + +Y    +K  
Sbjct: 121 GVEQTCALNKEKLVAKIDDSIVLGPEEEDHAAYLAEHGPLSTLLNAVALQYYQSGVLKPT 180

Query: 122 DEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181
            E C    + HAVL VGY K+ D+PYW+ +NSWG    ++G+F++ RG+  CGI  +A  
Sbjct: 181 FEECPDTELNHAVLTVGYDKEGDMPYWIIKNSWGTDWGEKGYFRLFRGDCTCGINRMATS 240

Query: 182 ATI 184
           A I
Sbjct: 241 AII 243

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|67773370|gb|AAY81942.1| cysteine protease 3 [Paragonimus westermani]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 69/183 (37%), Positives = 98/183 (53%), Gaps = 3/183 (1%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EGQ+ IKTG+LV  SK QLV+C +   GC G       +E  H  GLES+ DYPY    
Sbjct: 141 VEGQWFIKTGQLVSLSKQQLVDCDRAADGCNGGWPASSYLEIMHMGGLESQDDYPYA--- 197

Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKN 121
           G K +C  +K ++              +     L ++GPLS  LN   + +Y    I  +
Sbjct: 198 GVKEQCFMEKERLLAKIDDSIALGPSEDDNAAYLAEHGPLSTLLNAITLQYYQSGIIHPS 257

Query: 122 DEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181
            E CSP  + HAVL VGY K+ D+PYW+ +NSW     ++G+F++ RG+  CGI  +   
Sbjct: 258 YEECSPVDLNHAVLTVGYDKEGDMPYWIIKNSWNVEWGEKGYFRLYRGDGTCGINRMPTS 317

Query: 182 ATI 184
           A I
Sbjct: 318 AII 320

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

>gi|67773374|gb|AAY81944.1| cysteine protease 6 [Paragonimus westermani]

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 101/186 (54%), Gaps = 9/186 (4%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY---THQAGLESEKDYPYR 58
           +EGQ+ +KTG+LV  SK QLV+C  Q SGC   DG   P  Y       GLE+++DYPY 
Sbjct: 145 VEGQWFLKTGQLVSLSKQQLVDCDVQDSGC---DGGYPPTTYGEIIRMGGLEAQRDYPYV 201

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPI 118
              G +  C  D+SK+        +     +     + ++GP+S G+N   + FY     
Sbjct: 202 ---GREQPCKLDESKLLAKINSSIVLEANEKKQAAYIAEHGPMSSGINAVTLQFYQSGIS 258

Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETI 178
             +   C P+ + H VL VGYG +D +PYW+ +NSWG    ++G+F++ RG+  CGIE +
Sbjct: 259 HPSKSQCQPDWLNHGVLSVGYGTEDGVPYWIIKNSWGTGWGEKGYFRLYRGDGTCGIEKV 318

Query: 179 AGYATI 184
              A I
Sbjct: 319 VSSAII 324

Source: Paragonimus westermani

Species: Paragonimus westermani

Genus: Paragonimus

Family: Paragonimidae

Order: Plagiorchiida

Class: Trematoda

Phylum: Platyhelminthes

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	187
WB|WBGene00007055	477	tag-196 [Caenorhabditis elegan	0.957	0.375	0.354	3e-27
FB|FBgn0260462	614	CG12163 [Drosophila melanogast	0.941	0.286	0.355	1e-26
UNIPROTKB|Q9UBX1	484	CTSF "Cathepsin F" [Homo sapie	0.951	0.367	0.342	1.6e-26
UNIPROTKB|G1M0X4	337	CTSH "Uncharacterized protein"	0.914	0.507	0.368	3.2e-26
UNIPROTKB|E2RR02	460	CTSF "Uncharacterized protein"	0.962	0.391	0.340	7.3e-26
UNIPROTKB|F1MHV4	375	CTSW "Uncharacterized protein"	0.737	0.368	0.352	1.1e-25
UNIPROTKB|Q0VCU3	460	CTSF "Uncharacterized protein"	0.962	0.391	0.345	1.2e-25
UNIPROTKB|F6X9C1	305	CTSH "Uncharacterized protein"	0.909	0.557	0.366	1.4e-25
RGD|1309354	371	Ctsw "cathepsin W" [Rattus nor	0.721	0.363	0.326	1.6e-25
UNIPROTKB|F1RU48	460	CTSF "Uncharacterized protein"	0.962	0.391	0.340	2.1e-25

WB|WBGene00007055 tag-196 [Caenorhabditis elegans (taxid:6239)]

 Score = 308 (113.5 bits), Expect = 3.0e-27, P = 3.0e-27
 Identities = 66/186 (35%), Positives = 95/186 (51%)

Query:     2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAGLESEKDYPYRN 59
             +EG + I   KLV  S+ +LV+C     GC G  GL      E     GLE E  YPY +
Sbjct:   297 VEGAWFIAKNKLVSLSEQELVDCDSMDQGCNG--GLPSNAYKEIIRMGGLEPEDAYPY-D 353

Query:    60 GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
             G GE   C   +  + ++        +    M+K L   GP+S+GLN + + FY    + 
Sbjct:   354 GRGET--CHLVRKDIAVYINGSVELPHDEVEMQKWLVTKGPISIGLNANTLQFYRHGVVH 411

Query:   120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIA 179
                  C P  + H VL+VGYGK    PYW+ +NSWGP   + G+FK+ RG N CG++ +A
Sbjct:   412 PFKIFCEPFMLNHGVLIVGYGKDGRKPYWIVKNSWGPNWGEAGYFKLYRGKNVCGVQEMA 471

Query:   180 GYATID 185
               A ++
Sbjct:   472 TSALVN 477

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

FB|FBgn0260462 CG12163 [Drosophila melanogaster (taxid:7227)]

 Score = 308 (113.5 bits), Expect = 1.0e-26, P = 1.0e-26
 Identities = 69/194 (35%), Positives = 111/194 (57%)

Query:     2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG--CDGLEQPIEYTHQAGLESEKDYPYRN 59
             +EG YA+KTG+L EFS+ +L++C    S C G   D   + I+     GLE E +YPY+ 
Sbjct:   427 IEGLYAVKTGELKEFSEQELLDCDTTDSACNGGLMDNAYKAIKDI--GGLEYEAEYPYK- 483

Query:    60 GNGEKFKCAYDK--SKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHFYNGT 116
                +K +C +++  S V++    D     G+ET M++ L   GP+S+G+N + + FY G 
Sbjct:   484 --AKKNQCHFNRTLSHVQVAGFVDLP--KGNETAMQEWLLANGPISIGINANAMQFYRGG 539

Query:   117 PIKKNDEICSPNAIGHAVLLVGYGKQD------DIPYWLARNSWGPIGPDEGFFKIERGN 170
                    +CS   + H VL+VGYG  D       +PYW+ +NSWGP   ++G++++ RG+
Sbjct:   540 VSHPWKALCSKKNLDHGVLVVGYGVSDYPNFHKTLPYWIVKNSWGPRWGEQGYYRVYRGD 599

Query:   171 NACGIETIAGYATI 184
             N CG+  +A  A +
Sbjct:   600 NTCGVSEMATSAVL 613

GO:0035071 "salivary gland cell autophagic cell death" evidence=IEP

GO:0048102 "autophagic cell death" evidence=IEP

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0004869 "cysteine-type endopeptidase inhibitor activity" evidence=IEA

GO:0045169 "fusome" evidence=IDA

GO:0035220 "wing disc development" evidence=IGI

GO:0022416 "chaeta development" evidence=IGI

UNIPROTKB|Q9UBX1 CTSF "Cathepsin F" [Homo sapiens (taxid:9606)]

 Score = 302 (111.4 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 64/187 (34%), Positives = 99/187 (52%)

Query:     2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT---HQAGLESEKDYPYR 58
             +EGQ+ +  G L+  S+ +L++C K    C G  GL     Y+   +  GLE+E DY Y+
Sbjct:   304 VEGQWFLNQGTLLSLSEQELLDCDKMDKACMG--GLPSNA-YSAIKNLGGLETEDDYSYQ 360

Query:    59 NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPI 118
                G    C +   K K++           + +   L K GP+SV +N   + FY     
Sbjct:   361 ---GHMQSCNFSAEKAKVYINDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGIS 417

Query:   119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETI 178
             +    +CSP  I HAVLLVGYG + D+P+W  +NSWG    ++G++ + RG+ ACG+ T+
Sbjct:   418 RPLRPLCSPWLIDHAVLLVGYGNRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTM 477

Query:   179 AGYATID 185
             A  A +D
Sbjct:   478 ASSAVVD 484

GO:0006508 "proteolysis" evidence=IEA

GO:0004197 "cysteine-type endopeptidase activity" evidence=TAS

GO:0005764 "lysosome" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043202 "lysosomal lumen" evidence=TAS

UNIPROTKB|G1M0X4 CTSH "Uncharacterized protein" [Ailuropoda melanoleuca (taxid:9646)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 70/190 (36%), Positives = 102/190 (53%)

Query:     2 LEGQYAIKTGKLVEFSKSQLVECAKQCS--GCGGCDGL-EQPIEYT-HQAGLESEKDYPY 57
             LE   AIKTGKL+  ++ QLV+CA+  +  GC G  GL  Q  EY  +  G+  E  YPY
Sbjct:   152 LESAIAIKTGKLLSLAEQQLVDCAQDFNNHGCQG--GLPSQAFEYIRYNRGIMGEDSYPY 209

Query:    58 RNGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVG--LNGHLIHFY 113
             +  +G+   C +  SK   F  KD   +  N  + M + +  + P+S    + G  + + 
Sbjct:   210 KGQDGD---CKFQPSKAIAFV-KDVANITINDEQAMVEAVALFNPVSFAFEVTGDFMMYR 265

Query:   114 NGTPIKKNDEIC--SPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
              G     +   C  +P+ + HAVL VGYG+Q+ +PYW+ +NSWGP     G+F IERG N
Sbjct:   266 KGV---YSSTSCHKTPDKVNHAVLAVGYGEQNGVPYWIVKNSWGPQWGMHGYFLIERGKN 322

Query:   172 ACGIETIAGY 181
              CG+   A Y
Sbjct:   323 MCGLAACASY 332

GO:0001656 "metanephros development" evidence=ISS

GO:0001913 "T cell mediated cytotoxicity" evidence=ISS

GO:0002764 "immune response-regulating signaling pathway" evidence=ISS

GO:0004175 "endopeptidase activity" evidence=ISS

GO:0004177 "aminopeptidase activity" evidence=ISS

GO:0004197 "cysteine-type endopeptidase activity" evidence=ISS

GO:0004252 "serine-type endopeptidase activity" evidence=ISS

GO:0005615 "extracellular space" evidence=ISS

GO:0005764 "lysosome" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0006508 "proteolysis" evidence=ISS

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0008284 "positive regulation of cell proliferation" evidence=ISS

GO:0010628 "positive regulation of gene expression" evidence=ISS

GO:0010634 "positive regulation of epithelial cell migration" evidence=ISS

GO:0010813 "neuropeptide catabolic process" evidence=ISS

GO:0010815 "bradykinin catabolic process" evidence=ISS

GO:0010952 "positive regulation of peptidase activity" evidence=ISS

GO:0016505 "apoptotic protease activator activity" evidence=ISS

GO:0030108 "HLA-A specific activating MHC class I receptor activity" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0031638 "zymogen activation" evidence=ISS

GO:0031648 "protein destabilization" evidence=ISS

GO:0032526 "response to retinoic acid" evidence=ISS

GO:0033619 "membrane protein proteolysis" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043129 "surfactant homeostasis" evidence=ISS

GO:0045766 "positive regulation of angiogenesis" evidence=ISS

GO:0060448 "dichotomous subdivision of terminal units involved in lung branching" evidence=ISS

GO:0070324 "thyroid hormone binding" evidence=ISS

GO:0070371 "ERK1 and ERK2 cascade" evidence=ISS

GO:0097208 "alveolar lamellar body" evidence=ISS

UNIPROTKB|E2RR02 CTSF "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 295 (108.9 bits), Expect = 7.3e-26, P = 7.3e-26
 Identities = 63/185 (34%), Positives = 96/185 (51%)

Query:     2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGC-GGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
             +EGQ+ +K G L+  S+ +L++C K    C GG          T   GLE+E DY Y+  
Sbjct:   280 VEGQWFLKEGTLLSLSEQELLDCDKVDKACLGGLPSNAYSAIMT-LGGLETEDDYSYQ-- 336

Query:    61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
              G    C++   K +++           + +   L K GP+SV +N   + FY       
Sbjct:   337 -GHLQACSFSAKKARVYINDSMELSQNEQKLAAWLAKKGPISVAINAFGMQFYRHGISHP 395

Query:   121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAG 180
                +CSP  I HAVLLVGYG +  IP+W  +NSWG    +EG++ + RG+ ACG+ T+A 
Sbjct:   396 LRPLCSPWLIDHAVLLVGYGNRSGIPFWAIKNSWGTDWGEEGYYYLHRGSGACGVNTMAS 455

Query:   181 YATID 185
              A ++
Sbjct:   456 SAVVN 460

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F1MHV4 CTSW "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 200 (75.5 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 50/142 (35%), Positives = 78/142 (54%)

Query:     2 LEGQYAIKTGKLVEFS-KSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
             +E  +AIK    VE S + +L++C +  +GC G    +  +   + +GL SEKDYP+ NG
Sbjct:   160 IEALWAIKFRHFVEVSVQPELLDCDRCGNGCRGGFVWDAFLTVLNNSGLASEKDYPF-NG 218

Query:    61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
             +G+  +C   K K K+   +DF+     E +M + L   GP++V +N  L+  Y    IK
Sbjct:   219 SGKTHRCLAKKYK-KVAWIQDFIILQACEQSMARHLATEGPITVTINMTLLQQYQKGVIK 277

Query:   120 KNDEICSPNAIGHAVLLVGYGK 141
                  C P  + H+VLLVG+GK
Sbjct:   278 ATPTTCDPTQVDHSVLLVGFGK 299

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q0VCU3 CTSF "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 293 (108.2 bits), Expect = 1.2e-25, P = 1.2e-25
 Identities = 64/185 (34%), Positives = 95/185 (51%)

Query:     2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGC-GGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
             +EGQ+ +K G L+  S+ +L++C K    C GG          T   GLE+E DY YR  
Sbjct:   280 VEGQWFLKRGTLLSLSEQELLDCDKTDKACLGGLPSNAYSAIRT-LGGLETEDDYSYR-- 336

Query:    61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
              G    C++   K K++           + +   L K GP+S+ +N   + FY       
Sbjct:   337 -GRLQTCSFSAEKAKVYINDSVELSKNEQKLAAWLAKNGPVSIAINAFGMQFYRHGISHP 395

Query:   121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAG 180
                +CSP  I HAVLLVGYG +  IP+W  +NSWG    +EG++ + RG+ ACG+  +A 
Sbjct:   396 LRPLCSPWLIDHAVLLVGYGNRSAIPFWAIKNSWGTDWGEEGYYYLHRGSGACGVNIMAS 455

Query:   181 YATID 185
              A I+
Sbjct:   456 SAVIN 460

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|F6X9C1 CTSH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 70/191 (36%), Positives = 102/191 (53%)

Query:     2 LEGQYAIKTGKLVEFSKSQLVECAKQCS--GCGGCDGLEQPIEYT-HQAGLESEKDYPYR 58
             LE   AIK+GKL+  ++ QLV+CA+  +  GC G   L Q  EY  +  G+  E  YPY+
Sbjct:   120 LESAIAIKSGKLLSLAEQQLVDCAQNFNNHGCQGGAPL-QAFEYIRYNKGIMGEDSYPYK 178

Query:    59 NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGL---NGHLIH-- 111
               +G+   C Y  SK   F  KD   +  N  + M + +  Y P+S      +  +++  
Sbjct:   179 GQDGD---CKYQPSKAIAFV-KDVANITINDEQAMVEAVALYNPVSFAFEVTSDFMMYRK 234

Query:   112 -FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN 170
               Y+ T   K     +P+ + HAVL VGYG+Q+ IPYW+ +NSWGP     G+F +ERG 
Sbjct:   235 GIYSSTSCHK-----TPDKVNHAVLAVGYGEQNGIPYWIVKNSWGPQWGMNGYFLMERGK 289

Query:   171 NACGIETIAGY 181
             N CG+   A Y
Sbjct:   290 NMCGLAACASY 300

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1309354 Ctsw "cathepsin W" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 1.6e-25, Sum P(2) = 1.6e-25
 Identities = 45/138 (32%), Positives = 79/138 (57%)

Query:     6 YAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKF 65
             + IKT + V+ S  +L++C +  +GC G    +  I   + +GL SE+DYP++ G+ +  
Sbjct:   164 WRIKTQQFVDVSVQELLDCDRCGNGCNGGFVWDAYITVLNNSGLASEEDYPFQ-GHQKPH 222

Query:    66 KCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEI 124
             +C  DK + K+   +DF   + +E  +   L  +GP++V +N  L+ +Y    IK     
Sbjct:   223 RCLADKYR-KVAWIQDFTMLSSNEQVIAGYLAIHGPITVTINMKLLQYYQKGVIKATPST 281

Query:   125 CSPNAIGHAVLLVGYGKQ 142
             C P+ + H+VLLVG+GK+
Sbjct:   282 CDPHLVNHSVLLVGFGKE 299

GO:0006508 "proteolysis" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

UNIPROTKB|F1RU48 CTSF "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 291 (107.5 bits), Expect = 2.1e-25, P = 2.1e-25
 Identities = 63/185 (34%), Positives = 97/185 (52%)

Query:     2 LEGQYAIKTGKLVEFSKSQLVECAKQCSGC-GGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
             +EGQ+ +K G L+  S+ +L++C K   GC GG          T   GLE+E+DY YR  
Sbjct:   280 VEGQWFLKQGTLLSLSEQELLDCDKVDKGCMGGLPSNAYSAIKT-LGGLETEEDYSYR-- 336

Query:    61 NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
              G    C+++  K K++           + +   L + GP+SV +N   + FY       
Sbjct:   337 -GHLQTCSFNAEKAKVYINDSVELSQNEQKLAAWLAEKGPISVAINAFGMQFYRHGISHP 395

Query:   121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAG 180
                +CSP  I HAVLLVGYG +   P+W  +NSWG    +EG++ + RG+ ACG+  +A 
Sbjct:   396 LRPLCSPWLIDHAVLLVGYGNRSATPFWAIKNSWGTDWGEEGYYYLYRGSGACGVNIMAS 455

Query:   181 YATID 185
              A ++
Sbjct:   456 SAVVN 460

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.22	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	187
cd02248	210	cd02248, Peptidase_C1A, Peptidase C1A subfamily (M	6e-50
pfam00112	213	pfam00112, Peptidase_C1, Papain family cysteine pr	5e-49
smart00645	175	smart00645, Pept_C1, Papain family cysteine protea	6e-29
cd02621	243	cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al	2e-23
PTZ00203	348	PTZ00203, PTZ00203, cathepsin L protease; Provisio	8e-23
cd02620	236	cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro	3e-21
PTZ00200	448	PTZ00200, PTZ00200, cysteine proteinase; Provision	3e-20
cd02619	223	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS	2e-18
PTZ00021	489	PTZ00021, PTZ00021, falcipain-2; Provisional	3e-15
cd02698	239	cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th	3e-13
PTZ00049	693	PTZ00049, PTZ00049, cathepsin C-like protein; Prov	2e-09
PTZ00364	548	PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs	2e-07
PTZ00462	1004	PTZ00462, PTZ00462, Serine-repeat antigen protein;	5e-07

>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

 Score =  160 bits (406), Expect = 6e-50
 Identities = 78/186 (41%), Positives = 103/186 (55%), Gaps = 11/186 (5%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYR 58
            LEG YAIKTGKLV  S+ QLV+C+   SG  GC+G   +   EY    GL SE DYPY 
Sbjct: 32  ALEGAYAIKTGKLVSLSEQQLVDCST--SGNNGCNGGNPDNAFEYVKNGGLASESDYPYT 89

Query: 59  NGNGEKFKCAYDKSKVKLF-TGKDFLYFNGSETMKKILYKYGPLSVGLN-GHLIHFYNGT 116
             +G    C Y+ SKV    TG   +     E +K  L  YGP+SV ++      FY G 
Sbjct: 90  GKDG---TCKYNSSKVGAKITGYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGG 146

Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIE 176
               +   CS   + HAVLLVGYG ++ + YW+ +NSWG    ++G+ +I RG+N CGI 
Sbjct: 147 IY--SGPCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIA 204

Query: 177 TIAGYA 182
           + A Y 
Sbjct: 205 SYASYP 210

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to hatch or to evade the host immune system. Mammalian CPs are primarily lysosomal enzymes with the exception of cathepsin W, which is retained in the endoplasmic reticulum. They are responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. In addition to its inhibitory role, the propeptide is required for proper folding of the newly synthesized enzyme and its stabilization in denaturing pH conditions. Residues within the propeptide region also play a role in the transport of the proenzyme to lysosomes or acidified vesicles. Also included in this subfamily are proteins classified as non-peptidase homologs, which lack peptidase activity or have missing active site residues. Length = 210

>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease

 Score =  157 bits (400), Expect = 5e-49
 Identities = 73/194 (37%), Positives = 103/194 (53%), Gaps = 26/194 (13%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQA-GLESEKDYPYR 58
           LEG+Y IKTGKLV  S+ QLV+C    +G  GC+G   +   EY  +  G+ +E DYPY 
Sbjct: 34  LEGRYCIKTGKLVSLSEQQLVDC---DTGNNGCNGGLPDNAFEYIKKNGGIVTESDYPYT 90

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLY--FNGSETMKKILYKYGPLSVGLNGHLIHF---- 112
             +G    C + KS  K    K +    +N  E ++  L K GP+SV ++ +   F    
Sbjct: 91  AHDG---TCKFKKSNSKYAKIKGYGDVPYNDEEALQAALAKNGPVSVAIDAYEDDFQLYK 147

Query: 113 ---YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG 169
              Y  T        CS   + HAVL+VGYG ++ +PYW+ +NSWG    + G+F+I RG
Sbjct: 148 SGVYKHTE-------CSGE-LDHAVLIVGYGTENGVPYWIVKNSWGTDWGENGYFRIARG 199

Query: 170 NNACGIETIAGYAT 183
            N CGI + A Y  
Sbjct: 200 VNECGIASEASYPI 213

Length = 213

>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease

 Score =  104 bits (263), Expect = 6e-29
 Identities = 58/188 (30%), Positives = 78/188 (41%), Gaps = 52/188 (27%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQ-AGLESEKDYPY 57
            LEG+Y IKTGKLV  S+ QLV+C+   +   GC+G   +   EY  +  GLE+E  YPY
Sbjct: 33  ALEGRYCIKTGKLVSLSEQQLVDCSGGGNC--GCNGGLPDNAFEYIKKNGGLETESCYPY 90

Query: 58  RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
                                                       SV ++     FY    
Sbjct: 91  ------------------------------------------TGSVAIDASDFQFYKSGI 108

Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFKIERG-NNACG 174
                  C    + HAVL+VGYG +  +   YW+ +NSWG    + G+F+I RG NN CG
Sbjct: 109 YD--HPGCGSGTLDHAVLIVGYGTEVENGKDYWIVKNSWGTDWGENGYFRIARGKNNECG 166

Query: 175 IETIAGYA 182
           IE      
Sbjct: 167 IEASVASY 174

Length = 175

>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

 Score = 92.8 bits (231), Expect = 2e-23
 Identities = 53/188 (28%), Positives = 85/188 (45%), Gaps = 24/188 (12%)

Query: 16  FSKSQLVECAKQCSGCGGCDGLEQPI-EYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKV 74
            S   ++ C++   GC G  G    + ++    G+ +E  +PY   +     C    S+ 
Sbjct: 58  LSPQHVLSCSQYSQGCDG--GFPFLVGKFAEDFGIVTEDYFPYTADDDRP--CKASPSEC 113

Query: 75  KLFTGKDFLYFNG------SETMKKILYKYGPLSVGLNGH--LIHFYNGT-PIKKNDEIC 125
           + +   D+ Y  G       + MK  +Y+ GP+ V    +     +  G      NDE+ 
Sbjct: 114 RRYYFSDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVS 173

Query: 126 -SPN-------AIGHAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFFKIERGNNACGI 175
              N          HAVLLVG+G+ +     YW+ +NSWG    ++G+FKI RG N CGI
Sbjct: 174 DGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGI 233

Query: 176 ETIAGYAT 183
           E+ A +A 
Sbjct: 234 ESQAVFAY 241

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are associated with Papillon-Lefevre and Haim-Munk syndromes, rare diseases characterized by hyperkeratosis and early-onset periodontitis. Cathepsin C is widely expressed in many tissues with high levels in lung, kidney and placenta. It is also highly expressed in cytotoxic lymphocytes and mature myeloid cells. Length = 243

>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional

 Score = 92.8 bits (230), Expect = 8e-23
 Identities = 58/177 (32%), Positives = 89/177 (50%), Gaps = 11/177 (6%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEY--THQAG-LESEKDYPY 57
           +E Q+A+   KLV  S+ QLV C    +GCGG  GL  Q  E+   +  G + +EK YPY
Sbjct: 159 IESQWAVAGHKLVRLSEQQLVSCDHVDNGCGG--GLMLQAFEWVLRNMNGTVFTEKSYPY 216

Query: 58  RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLNGHLIHFYNGT 116
            +GNG+  +C+             ++    SE  M   L K GP+S+ ++      Y+  
Sbjct: 217 VSGNGDVPECSNSSELAPGARIDGYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSG 276

Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNAC 173
            +      C    + H VLLVGY    ++PYW+ +NSWG    ++G+ ++  G NAC
Sbjct: 277 VLTS----CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNAC 329

Length = 348

>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

 Score = 86.6 bits (215), Expect = 3e-21
 Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 31/188 (16%)

Query: 14  VEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPYRNGNGEKF----- 65
           V  S   L+ C   CSGCG GC+G   +   +Y    G+ +    PY             
Sbjct: 51  VLLSAQDLLSC---CSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPP 107

Query: 66  --------------KCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGH--L 109
                          C     + K      +   +    + K +   GP+      +   
Sbjct: 108 PCCGTPYCTPKCQDGCEKTYEEDKHKGKSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDF 167

Query: 110 IHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG 169
           +++ +G     + +       GHAV ++G+G ++ +PYWLA NSWG    + G+F+I RG
Sbjct: 168 LYYKSGVYQHTSGKQLG----GHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRG 223

Query: 170 NNACGIET 177
           +N CGIE+
Sbjct: 224 SNECGIES 231

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane antibody-mediated interstitial nephritis. It plays a role in renal tubulogenesis and is defective in hereditary tubulointerstitial disorders. TIN-Ag is exclusively expressed in kidney tissues. . Length = 236

>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional

 Score = 86.7 bits (215), Expect = 3e-20
 Identities = 57/188 (30%), Positives = 83/188 (44%), Gaps = 29/188 (15%)

Query: 3   EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNGN 61
           E  Y I   K V+ S+ +LV C  +  GC G  G  +  +EY    GL S  D PY    
Sbjct: 269 ESLYKIYRDKSVDLSEQELVNCDTKSQGCSG--GYPDTALEYVKNKGLSSSSDVPYL--- 323

Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGH--LIHF----YNG 115
            +  KC    +K        +L   G + + K L    P  V +     L+ +    YNG
Sbjct: 324 AKDGKCVVSSTKKVYIDS--YLVAKGKDVLNKSLV-ISPTVVYIAVSRELLKYKSGVYNG 380

Query: 116 TPIKKNDEICSPNAIGHAVLLVG--YGKQDDIPYWLARNSWGPIGPDEGFFKIER---GN 170
                    C  + + HAVLLVG  Y ++    YW+ +NSWG    + G+ ++ER   G 
Sbjct: 381 E--------CGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLERTNEGT 431

Query: 171 NACGIETI 178
           + CGI T+
Sbjct: 432 DKCGILTV 439

Length = 448

>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

 Score = 79.1 bits (195), Expect = 2e-18
 Identities = 48/181 (26%), Positives = 73/181 (40%), Gaps = 15/181 (8%)

Query: 1   MLEGQYAIKTG--KLVEFSKSQLVECAKQ-CSGCG-GCDG---LEQPIEYTHQAGLESEK 53
            LE  Y IK G  + V+ S   L  CA   C G    CDG   L   ++     G+  E+
Sbjct: 29  ALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLKLVALKGIPPEE 88

Query: 54  DYPYRNGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIH 111
           DYPY   +  +   +           KD+  +  N  E +K+ L K GP+  G + +   
Sbjct: 89  DYPYGAESDGEEPKSEAALNAAKVKLKDYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGF 148

Query: 112 FYNGTPIKKN----DEICSPNAIGHAVLLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFK 165
                 I             +  GHAV++VGY     +    ++ +NSWG    D G+ +
Sbjct: 149 DRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGR 208

Query: 166 I 166
           I
Sbjct: 209 I 209

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel structure with the active sites imbedded in the central channel. Some members of the C1 family are proteins classified as non-peptidase homologs which lack peptidase activity or have missing active site residues. Length = 223

>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional

 Score = 72.5 bits (178), Expect = 3e-15
 Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 29/201 (14%)

Query: 3   EGQYAIKTGKLVEFSKSQLVECAKQCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYRN 59
           E QYAI+  +LV  S+ +LV+C+ + +GC G    +  E  IE     GL SE DYPY +
Sbjct: 300 ESQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNAFEDMIEL---GGLCSEDDYPYVS 356

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-GHLIHFYNGTPI 118
              E   C  D+ K K +  K ++     +  K+ +   GP+SV +       FY G  I
Sbjct: 357 DTPE--LCNIDRCKEK-YKIKSYVSIP-EDKFKEAIRFLGPISVSIAVSDDFAFYKGG-I 411

Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIP----------YWLARNSWGPIGPDEGFFKIER 168
              +    PN   HAV+LVGYG ++             Y++ +NSWG    ++GF +IE 
Sbjct: 412 FDGECGEEPN---HAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIET 468

Query: 169 GNNA----CGIETIAGYATID 185
             N     C + T A    I+
Sbjct: 469 DENGLMKTCSLGTEAYVPLIE 489

Length = 489

>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 41/157 (26%), Positives = 69/157 (43%), Gaps = 18/157 (11%)

Query: 28  CSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKS--------KVKLF 77
           C+G G C G +     EY H+ G+  E   PY+  +GE        +         +K +
Sbjct: 65  CAGGGSCHGGDPGGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFGECFAIKNY 124

Query: 78  TG---KDFLYFNGSETMKKILYKYGPLSVGLNGH-LIHFYNGTPIKKNDEICSPNAIGHA 133
           T     D+   +G + M   +Y  GP+S G+     +  Y G   K+  +    N   H 
Sbjct: 125 TLYFVSDYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKEYVQDPLIN---HI 181

Query: 134 VLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERG 169
           + + G+G  ++ + YW+ RNSWG    + G+F+I   
Sbjct: 182 ISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTS 218

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response. Length = 239

>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional

 Score = 55.7 bits (134), Expect = 2e-09
 Identities = 24/52 (46%), Positives = 34/52 (65%), Gaps = 4/52 (7%)

Query: 130 IGHAVLLVGYGKQDD----IPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           + HA++LVG+G+++       YW+ RNSWG     EG+FKI RG N  GIE+
Sbjct: 618 VNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIES 669

Length = 693

>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 42/187 (22%), Positives = 73/187 (39%), Gaps = 31/187 (16%)

Query: 22  VECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDY--PYRNGNGEKFKCAYDKSKVK- 75
                 CS  G GC G   E+  ++    G+ +   Y  PY +G+G +  C   +   + 
Sbjct: 266 ARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRY 325

Query: 76  LFTGKDFL--YF---NGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNA- 129
            FT    L  Y+      + +   +Y++GP+   +  +   +       ++    S +  
Sbjct: 326 YFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDY 385

Query: 130 ----------------IGHAVLLVGYGK-QDDIPYWLARNSWGPIGP--DEGFFKIERGN 170
                           + H VL++G+G  ++   YWL  + WG      D G  KI RG 
Sbjct: 386 STASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGV 445

Query: 171 NACGIET 177
           NA  IE+
Sbjct: 446 NAYNIES 452

Length = 548

>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional

 Score = 48.5 bits (115), Expect = 5e-07
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 119 KKNDEICSPNAIGHAVLLVGYG-----KQDDIPYWLARNSWGPIGPDEGFFKIE 167
           KK   +C  +   HAV +VGYG     + +   YW+ RNSWG    DEG+FK++
Sbjct: 710 KKVQNLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763

Length = 1004

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	187
KOG1542|consensus	372		100.0
cd02621	243	Peptidase_C1A_CathepsinC Cathepsin C; also known a	100.0
cd02620	236	Peptidase_C1A_CathepsinB Cathepsin B group; compos	100.0
PTZ00203	348	cathepsin L protease; Provisional	100.0
cd02698	239	Peptidase_C1A_CathepsinX Cathepsin X; the only pap	100.0
cd02248	210	Peptidase_C1A Peptidase C1A subfamily (MEROPS data	100.0
KOG1543|consensus	325		100.0
PTZ00021	489	falcipain-2; Provisional	100.0
PTZ00200	448	cysteine proteinase; Provisional	100.0
PF00112	219	Peptidase_C1: Papain family cysteine protease This	100.0
PTZ00049	693	cathepsin C-like protein; Provisional	100.0
PTZ00364	548	dipeptidyl-peptidase I precursor; Provisional	100.0
PTZ00462	1004	Serine-repeat antigen protein; Provisional	100.0
cd02619	223	Peptidase_C1 C1 Peptidase family (MEROPS database	100.0
smart00645	174	Pept_C1 Papain family cysteine protease.	100.0
KOG1544|consensus	470		100.0
COG4870	372	Cysteine protease [Posttranslational modification,	99.72
cd00585	437	Peptidase_C1B Peptidase C1B subfamily (MEROPS data	99.72
PF03051	438	Peptidase_C1_2: Peptidase C1-like family This fami	98.97
COG3579	444	PepC Aminopeptidase C [Amino acid transport and me	97.56
PF13529	144	Peptidase_C39_2: Peptidase_C39 like family; PDB: 3	96.3
PF09778	212	Guanylate_cyc_2: Guanylylate cyclase; InterPro: IP	92.91
PF05543	175	Peptidase_C47: Staphopain peptidase C47; InterPro:	91.05
PF14399	317	Transpep_BrtH: NlpC/p60-like transpeptidase	90.89
KOG4128|consensus	457		88.15
COG4990	195	Uncharacterized protein conserved in bacteria [Fun	87.54

>KOG1542|consensus

Probab=100.00  E-value=3.1e-54  Score=349.67  Aligned_cols=180  Identities=42%  Similarity=0.856  Sum_probs=172.3

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHH-HHhCcccccccccccCCCCCcc-cccCCCCcceeee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKF-KCAYDKSKVKLFT   78 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~-~~~~Gi~~e~~yPY~~~~~~~~-~C~~~~~~~~~~i   78 (187)
                      ++|++++|++++.++||||||+||+..++||+||. +.+||+| ++..|+.+|.+|||.   +..+ .|........+.|
T Consensus       189 ~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~GGl-~~nA~~~~~~~gGL~~E~dYPY~---g~~~~~C~~~~~~~~v~I  264 (372)
T KOG1542|consen  189 AVEGAWAIATGKLVSLSEQELVDCDSCDNGCNGGL-MDNAFKYIKKAGGLEKEKDYPYT---GKKGNQCHFDKSKIVVSI  264 (372)
T ss_pred             hhhhHHHhhcCcccccchhhhhcccCcCCcCCCCC-hhHHHHHHHHhCCccccccCCcc---ccCCCccccchhhceEEE
Confidence            58999999999999999999999999899999999 9999999 888999999999999   8877 9999999999999


Q ss_pred             ccceeEeC-ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecC-CccEEEEEccCCC
Q psy274           79 GKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQD-DIPYWLARNSWGP  156 (187)
Q Consensus        79 ~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~  156 (187)
                      . +|..++ ++++|.+.|.+.|||+|+|++..+|.|.+||..+.+..|++..++|+|+|||||.++ .++|||||||||+
T Consensus       265 ~-~f~~l~~nE~~ia~wLv~~GPi~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~  343 (372)
T KOG1542|consen  265 K-DFSMLSNNEDQIAAWLVTFGPLSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGT  343 (372)
T ss_pred             e-ccEecCCCHHHHHHHHHhcCCeEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccc
Confidence            9 999999 999999999999999999999999999999999877889998899999999999888 9999999999999


Q ss_pred             CCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274          157 IGPDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       157 ~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      +||++||+||.||.|.|||++.+..|.++
T Consensus       344 ~WGE~GY~~l~RG~N~CGi~~mvss~~v~  372 (372)
T KOG1542|consen  344 SWGEKGYYKLCRGSNACGIADMVSSAAVN  372 (372)
T ss_pred             cccccceEEEeccccccccccchhhhhcC
Confidence            99999999999999999999999888653

>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access

Probab=100.00  E-value=2.1e-50  Score=324.18  Aligned_cols=176  Identities=29%  Similarity=0.574  Sum_probs=153.2

Q ss_pred             CchhhHHHHhCC------CccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCC-CcccccCCC-C
Q psy274            1 MLEGQYAIKTGK------LVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNG-EKFKCAYDK-S   72 (187)
Q Consensus         1 a~E~~~~i~~~~------~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~-~~~~C~~~~-~   72 (187)
                      +||++++|++++      .+.||+|+|+||+..+.||+||+ +..|++|++++|+++|++|||.   . ..+.|.... .
T Consensus        37 ~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~-~~~a~~~~~~~Gi~~e~~yPY~---~~~~~~C~~~~~~  112 (243)
T cd02621          37 ALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGF-PFLVGKFAEDFGIVTEDYFPYT---ADDDRPCKASPSE  112 (243)
T ss_pred             HHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCC-HHHHHHHHHhcCcCCCceeCCC---CCCCCCCCCCccc
Confidence            589999999887      79999999999997788999999 9999999999999999999999   5 677887654 3


Q ss_pred             cceeeeccceeEe------CChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCC----CCC--------CcccEE
Q psy274           73 KVKLFTGKDFLYF------NGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEI----CSP--------NAIGHA  133 (187)
Q Consensus        73 ~~~~~i~~~~~~i------~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~----~~~--------~~~~Ha  133 (187)
                      ...+++. .|..+      .++++||++|+++|||+++|++ ++|++|++|||+.  +.    |+.        ..++|+
T Consensus       113 ~~~~~~~-~~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F~~Y~~GIy~~--~~~~~~C~~~~~~~~~~~~~~Ha  189 (243)
T cd02621         113 CRRYYFS-DYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHH--TDNDEVSDGDNDNFNPFELTNHA  189 (243)
T ss_pred             ccccccc-ceeEcccccccCCHHHHHHHHHHcCCEEEEEEecccccccCCeEECc--CCcccccccccccccCcccCCeE
Confidence            3444555 55544      3789999999999999999999 8999999999987  32    643        247999


Q ss_pred             EEEEEEeecC--CccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEE
Q psy274          134 VLLVGYGKQD--DIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYAT  183 (187)
Q Consensus       134 v~iVGyg~~~--g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~  183 (187)
                      |+|||||+++  +.+|||||||||++||++|||||+|+.|.|||+++++++.
T Consensus       190 V~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~~~~~~  241 (243)
T cd02621         190 VLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQAVFAY  241 (243)
T ss_pred             EEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccceEeec
Confidence            9999999876  8999999999999999999999999999999999998864

Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc

>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag)

Probab=100.00  E-value=3.3e-50  Score=321.79  Aligned_cols=176  Identities=25%  Similarity=0.458  Sum_probs=150.0

Q ss_pred             CchhhHHHHhC--CCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccccccccccCCCCC--------------
Q psy274            1 MLEGQYAIKTG--KLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGE--------------   63 (187)
Q Consensus         1 a~E~~~~i~~~--~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~--------------   63 (187)
                      +||++++|+++  +.+.||+|+|+||+.. +.||+||+ +..||+|++++|+++|++|||......              
T Consensus        36 ~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~-~~~a~~~i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~  114 (236)
T cd02620          36 AFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGY-PDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPY  114 (236)
T ss_pred             HHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCC-HHHHHHHHHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCC
Confidence            58999999988  7899999999999987 88999999 999999998999999999999832211              


Q ss_pred             -cccccCCCC----cceeeeccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEE
Q psy274           64 -KFKCAYDKS----KVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLL  136 (187)
Q Consensus        64 -~~~C~~~~~----~~~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~i  136 (187)
                       ...|.....    ...+++. .+..+. ++++||++|+++|||+++|.+ ++|+.|++|||+.   .|+...++|||+|
T Consensus       115 ~~~~C~~~~~~~~~~~~~~~~-~~~~~~~~~~~ik~~l~~~GPv~v~i~~~~~f~~Y~~Giy~~---~~~~~~~~HaV~i  190 (236)
T cd02620         115 CTPKCQDGCEKTYEEDKHKGK-SAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQH---TSGKQLGGHAVKI  190 (236)
T ss_pred             CCCCCCcCCccccceeeeeec-ceeeeCCHHHHHHHHHHHCCCeEEEEEechhhhhcCCcEEee---cCCCCcCCeEEEE
Confidence             113432221    2234555 666665 679999999999999999999 8999999999986   4666568999999


Q ss_pred             EEEeecCCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeE
Q psy274          137 VGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY  181 (187)
Q Consensus       137 VGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~  181 (187)
                      ||||++++++|||||||||++||++|||||+|+.|.|||++.++.
T Consensus       191 VGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~  235 (236)
T cd02620         191 IGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA  235 (236)
T ss_pred             EEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence            999998999999999999999999999999999999999999875

Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane

>PTZ00203 cathepsin L protease; Provisional

Probab=100.00  E-value=7e-50  Score=334.53  Aligned_cols=178  Identities=30%  Similarity=0.595  Sum_probs=154.7

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHh---CcccccccccccCCCCCcccccCCCC-ccee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYRNGNGEKFKCAYDKS-KVKL   76 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~---~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~   76 (187)
                      ++|++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++   .|+++|++|||....+..+.|..... ....
T Consensus       158 aiEs~~~i~~~~~~~LSeQqLvdC~~~~~GC~GG~-~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~  236 (348)
T PTZ00203        158 NIESQWAVAGHKLVRLSEQQLVSCDHVDNGCGGGL-MLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGA  236 (348)
T ss_pred             HHHHHHHHhcCCCccCCHHHHHhccCCCCCCCCCC-HHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccce
Confidence            58999999999999999999999998788999999 9999999653   46899999999933233336864332 2346


Q ss_pred             eeccceeEeC-ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           77 FTGKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        77 ~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                      ++. +|..+. +++.|+++|++.|||+++|++++|++|++|||..    |.....+|+|+|||||+++|.+|||||||||
T Consensus       237 ~i~-~~~~i~~~e~~~~~~l~~~GPv~v~i~a~~f~~Y~~GIy~~----c~~~~~nHaVliVGYG~~~g~~YWiikNSWG  311 (348)
T PTZ00203        237 RID-GYVSMESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLTS----CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWG  311 (348)
T ss_pred             Eec-ceeecCcCHHHHHHHHHhCCCEEEEEEhhhhcCccCceeec----cCCCCCCeEEEEEEEecCCCceEEEEEcCCC
Confidence            788 888887 7889999999999999999998899999999964    7655679999999999988999999999999


Q ss_pred             CCCCCCcEEEEEecCCeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGNNACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+|+.|.|||+++++.+.+
T Consensus       312 ~~WGe~GY~ri~rg~n~Cgi~~~~~~~~~  340 (348)
T PTZ00203        312 EDWGEKGYVRVTMGVNACLLTGYPVSVHV  340 (348)
T ss_pred             CCcCcCceEEEEcCCCcccccceEEEEec
Confidence            99999999999999999999999998865

>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity

Probab=100.00  E-value=9.7e-50  Score=319.61  Aligned_cols=174  Identities=27%  Similarity=0.513  Sum_probs=151.3

Q ss_pred             CchhhHHHHhC---CCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCC-------
Q psy274            1 MLEGQYAIKTG---KLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYD-------   70 (187)
Q Consensus         1 a~E~~~~i~~~---~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~-------   70 (187)
                      +||++++|+++   +.+.||+|||+||+. +.||+||+ +..||+|++++|+++|++|||.   +....|...       
T Consensus        39 aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~-~~~a~~~~~~~Gl~~e~~yPY~---~~~~~C~~~~~~~~c~  113 (239)
T cd02698          39 ALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGD-PGGVYEYAHKHGIPDETCNPYQ---AKDGECNPFNRCGTCN  113 (239)
T ss_pred             HHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcC-HHHHHHHHHHcCcCCCCeeCCc---CCCCCCcCCCCCCCcc
Confidence            58999999876   368999999999998 78999999 9999999988999999999998   555555421       


Q ss_pred             --------CCcceeeeccceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEee
Q psy274           71 --------KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK  141 (187)
Q Consensus        71 --------~~~~~~~i~~~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~  141 (187)
                              +....++++ +|..+.+.++||++|+++|||+++|.+ ++|+.|++|||+.  +.|. ..++|+|+|||||+
T Consensus       114 ~~~~c~~~~~~~~~~i~-~~~~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~GIy~~--~~~~-~~~~HaV~IVGyG~  189 (239)
T cd02698         114 PFGECFAIKNYTLYFVS-DYGSVSGRDKMMAEIYARGPISCGIMATEALENYTGGVYKE--YVQD-PLINHIISVAGWGV  189 (239)
T ss_pred             cCcccccccccceEEee-eceecCCHHHHHHHHHHcCCEEEEEEecccccccCCeEEcc--CCCC-CcCCeEEEEEEEEe
Confidence                    112345677 787777788999999999999999999 8999999999987  4454 45899999999998


Q ss_pred             cC-CccEEEEEccCCCCCCCCcEEEEEecC-----CeecccceeeEEE
Q psy274          142 QD-DIPYWLARNSWGPIGPDEGFFKIERGN-----NACGIETIAGYAT  183 (187)
Q Consensus       142 ~~-g~~ywivkNSWG~~WG~~Gy~~i~~~~-----n~cgi~~~~~~~~  183 (187)
                      ++ +++|||||||||++||++|||||+|+.     |+|+||+.++++.
T Consensus       190 ~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~~~~~~  237 (239)
T cd02698         190 DENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAWAD  237 (239)
T ss_pred             cCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccceEEEe
Confidence            76 999999999999999999999999999     9999999999885

It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.

>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W)

Probab=100.00  E-value=1.4e-49  Score=311.89  Aligned_cols=175  Identities=42%  Similarity=0.840  Sum_probs=161.3

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++++++...+||+|+|++|... +.+|+||. +..||+++++.|+++|++|||.   .....|........+++.
T Consensus        32 ~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~-~~~a~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i~  107 (210)
T cd02248          32 ALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGN-PDNAFEYVKNGGLASESDYPYT---GKDGTCKYNSSKVGAKIT  107 (210)
T ss_pred             HHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCC-HHHhHHHHHHCCcCccccCCcc---CCCCCccCCCCcccEEEe
Confidence            589999999999999999999999986 88999999 9999999999999999999999   777889877767889999


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP  156 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~  156 (187)
                       +|..+.  +.++||++|+++|||+++|.+ ++|+.|++|||..  +.|....++|+|+|||||++.+.+|||||||||+
T Consensus       108 -~~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~--~~~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~  184 (210)
T cd02248         108 -GYSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSG--PCCSNTNLNHAVLLVGYGTENGVDYWIVKNSWGT  184 (210)
T ss_pred             -eEEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeC--CCCCCCcCCEEEEEEEEeecCCceEEEEEcCCCC
Confidence             999998  589999999999999999999 8999999999988  5564556899999999999889999999999999


Q ss_pred             CCCCCcEEEEEecCCeecccceeeEE
Q psy274          157 IGPDEGFFKIERGNNACGIETIAGYA  182 (187)
Q Consensus       157 ~WG~~Gy~~i~~~~n~cgi~~~~~~~  182 (187)
                      .||++|||||+|+.|.|||++.+.+|
T Consensus       185 ~WG~~Gy~~i~~~~~~cgi~~~~~~~  210 (210)
T cd02248         185 SWGEKGYIRIARGSNLCGIASYASYP  210 (210)
T ss_pred             ccccCcEEEEEcCCCccCceeeeecC
Confidence            99999999999999999999887764

Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h

>KOG1543|consensus

Probab=100.00  E-value=1.3e-48  Score=324.52  Aligned_cols=175  Identities=34%  Similarity=0.687  Sum_probs=160.8

Q ss_pred             CchhhHHHHhC-CCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccc-cccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTG-KLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLES-EKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~-~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~-e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      |||++++|+++ ..+.||+|||+||+.. ++||+||. +..||+|++++|+++ +.+|||.   +....|........+.
T Consensus       142 aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~-~~~A~~yi~~~G~~t~~~~Ypy~---~~~~~C~~~~~~~~~~  217 (325)
T KOG1543|consen  142 ALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGE-PKNAFKYIKKNGGVTECENYPYI---GKDGTCKSNKKDKTVT  217 (325)
T ss_pred             HHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCC-HHHHHHHHHHhCCCCCCcCCCCc---CCCCCccCCCccceeE
Confidence            68999999999 8999999999999996 89999999 999999988888888 9999999   7788999887777788


Q ss_pred             eccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           78 TGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        78 i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                      +. ++..++ ++++|+++|+.+|||+++|.+ .+|+.|++|||..  +.|....++|||+|||||+.++.+|||||||||
T Consensus       218 ~~-~~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y~~GVy~~--~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG  294 (325)
T KOG1543|consen  218 IK-GFYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLYKGGVYAE--EKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWG  294 (325)
T ss_pred             ee-eeeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhccCceEeC--CCCCCCCCCceEEEEEEcCCCCceeEEEEcCCC
Confidence            88 888777 999999999999999999999 9999999999999  455443589999999999966789999999999


Q ss_pred             CCCCCCcEEEEEecCCeecccceeeEE
Q psy274          156 PIGPDEGFFKIERGNNACGIETIAGYA  182 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~n~cgi~~~~~~~  182 (187)
                      +.||++|||||.|+.|.|+|++.+.++
T Consensus       295 ~~WGe~Gy~ri~r~~~~~~I~~~~~~~  321 (325)
T KOG1543|consen  295 TDWGEKGYFRIARGVNKCGIASEASYG  321 (325)
T ss_pred             CCcccCceEEEecCCCchhhhcccccC
Confidence            999999999999999999999998883

>PTZ00021 falcipain-2; Provisional

Probab=100.00  E-value=3e-48  Score=334.39  Aligned_cols=175  Identities=33%  Similarity=0.594  Sum_probs=156.2

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHH-HhCcccccccccccCCCCC-cccccCCCCcceeee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT-HQAGLESEKDYPYRNGNGE-KFKCAYDKSKVKLFT   78 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~-~~~C~~~~~~~~~~i   78 (187)
                      |+|++++|++++.++||+|+|+||+..+.||+||+ +..||+|+ +..|+++|++|||.   +. ++.|........+++
T Consensus       298 alEs~~~I~~g~~v~LSeQqLVDCs~~n~GC~GG~-~~~Af~yi~~~gGl~tE~~YPY~---~~~~~~C~~~~~~~~~~i  373 (489)
T PTZ00021        298 VVESQYAIRKNELVSLSEQELVDCSFKNNGCYGGL-IPNAFEDMIELGGLCSEDDYPYV---SDTPELCNIDRCKEKYKI  373 (489)
T ss_pred             HHHHHHHHHcCCCcccCHHHHhhhccCCCCCCCcc-hHhhhhhhhhccccCcccccCcc---CCCCCcccccccccccee
Confidence            58999999999999999999999998789999999 99999995 56699999999999   65 478976555566889


Q ss_pred             ccceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCC----------ccE
Q psy274           79 GKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD----------IPY  147 (187)
Q Consensus        79 ~~~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g----------~~y  147 (187)
                      . +|..++ ..+|+++|+..|||+++|.+ ++|++|++|||..   .|+. .++|||+|||||++++          .+|
T Consensus       374 ~-~y~~i~-~~~lk~al~~~GPVsv~i~a~~~f~~YkgGIy~~---~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~Y  447 (489)
T PTZ00021        374 K-SYVSIP-EDKFKEAIRFLGPISVSIAVSDDFAFYKGGIFDG---ECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYY  447 (489)
T ss_pred             e-eEEEec-HHHHHHHHHhcCCeEEEEEeecccccCCCCcCCC---CCCC-ccceEEEEEEecCcCCcccccccCCCCCE
Confidence            8 998885 67899999999999999999 8999999999976   6876 4799999999997642          479


Q ss_pred             EEEEccCCCCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          148 WLARNSWGPIGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       148 wivkNSWG~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      ||||||||++||++|||||+|+.    |.|||.+.+.+|++|
T Consensus       448 WIVKNSWGt~WGE~GY~rI~r~~~g~~n~CGI~t~a~yP~~~  489 (489)
T PTZ00021        448 YIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVPLIE  489 (489)
T ss_pred             EEEECCCCCCcccCeEEEEEcCCCCCCCCCCCcccceeEecC
Confidence            99999999999999999999986    589999999999875

>PTZ00200 cysteine proteinase; Provisional

Probab=100.00  E-value=2e-47  Score=327.73  Aligned_cols=173  Identities=30%  Similarity=0.583  Sum_probs=151.9

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeeecc
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGK   80 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~   80 (187)
                      ++|++++|+++..++||+|||+||+..+.||+||+ +..||+|++++|+++|++|||.   +..+.|..... ...+|. 
T Consensus       267 aiEs~~~i~~~~~~~LSeQqLvDC~~~~~GC~GG~-~~~A~~yi~~~Gi~~e~~YPY~---~~~~~C~~~~~-~~~~i~-  340 (448)
T PTZ00200        267 SVESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGY-PDTALEYVKNKGLSSSSDVPYL---AKDGKCVVSST-KKVYID-  340 (448)
T ss_pred             HHHHHHHHhcCCCeecCHHHHhhccCccCCCCCCc-HHHHHHHHhhcCccccccCCCC---CCCCCCcCCCC-CeeEec-
Confidence            58999999999999999999999997789999999 9999999988999999999999   88889986543 345688 


Q ss_pred             ceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEee--cCCccEEEEEccCCCC
Q psy274           81 DFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK--QDDIPYWLARNSWGPI  157 (187)
Q Consensus        81 ~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~--~~g~~ywivkNSWG~~  157 (187)
                      +|..+...+.++++| ..|||+++|.+ .+|+.|++|||..   +|+.. ++|||+|||||.  ++|.+|||||||||++
T Consensus       341 ~y~~~~~~~~l~~~l-~~GPV~v~i~~~~~f~~Yk~GIy~~---~C~~~-~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~  415 (448)
T PTZ00200        341 SYLVAKGKDVLNKSL-VISPTVVYIAVSRELLKYKSGVYNG---ECGKS-LNHAVLLVGEGYDEKTKKRYWIIKNSWGTD  415 (448)
T ss_pred             ceEecCHHHHHHHHH-hcCCEEEEeecccccccCCCCcccc---ccCCC-CcEEEEEEEecccCCCCCceEEEEcCCCCC
Confidence            887665445555555 57999999999 8999999999976   68764 899999999994  4688999999999999


Q ss_pred             CCCCcEEEEEec---CCeecccceeeEEEE
Q psy274          158 GPDEGFFKIERG---NNACGIETIAGYATI  184 (187)
Q Consensus       158 WG~~Gy~~i~~~---~n~cgi~~~~~~~~~  184 (187)
                      ||++|||||+|+   .|.|||++.+.+|++
T Consensus       416 WGe~GY~ri~r~~~g~n~CGI~~~~~~P~~  445 (448)
T PTZ00200        416 WGENGYMRLERTNEGTDKCGILTVGLTPVF  445 (448)
T ss_pred             cccCeeEEEEeCCCCCCcCCccccceeeEE
Confidence            999999999996   489999999999987

>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification

Probab=100.00  E-value=8.3e-47  Score=296.82  Aligned_cols=176  Identities=34%  Similarity=0.646  Sum_probs=156.4

Q ss_pred             CchhhHHHHh-CCCccCCHHHHhhhcC-CCCCCCCCccchhhHHHHHh-CcccccccccccCCCCCc-ccccCCCCcc-e
Q psy274            1 MLEGQYAIKT-GKLVEFSKSQLVECAK-QCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEK-FKCAYDKSKV-K   75 (187)
Q Consensus         1 a~E~~~~i~~-~~~~~lS~q~l~dc~~-~~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~-~~C~~~~~~~-~   75 (187)
                      ++|++++++. ...++||+|+|++|.. .+.+|+||+ +.+|++++++ .|+++|++|||.   ... +.|....... .
T Consensus        34 ~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~-~~~a~~~~~~~~Gi~~e~~~pY~---~~~~~~c~~~~~~~~~  109 (219)
T PF00112_consen   34 ALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGS-PFDALKYIKNNNGIVTEEDYPYN---GNENPTCKSKKSNSYY  109 (219)
T ss_dssp             HHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBE-HHHHHHHHHHHTSBEBTTTS--S---SSSSCSSCHSGGGEEE
T ss_pred             ceeccccccccccccccccccccccccccccccccCc-ccccceeecccCccccccccccc---cccccccccccccccc
Confidence            4899999999 7899999999999998 578999999 9999999777 999999999999   666 7898765443 4


Q ss_pred             eeeccceeEeC--ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEE
Q psy274           76 LFTGKDFLYFN--GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLAR  151 (187)
Q Consensus        76 ~~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivk  151 (187)
                      .++. .|..+.  ++++||++|+++|||+++|.+ + +|+.|++|||..  +.|+...++|+|+|||||++.+++|||||
T Consensus       110 ~~i~-~~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi~~~--~~~~~~~~~Hav~iVGy~~~~~~~~wiv~  186 (219)
T PF00112_consen  110 VKIK-GYGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGIYDP--PDCSNESGGHAVLIVGYDDENGKGYWIVK  186 (219)
T ss_dssp             BEES-EEEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSEECS--TSSSSSSEEEEEEEEEEEEETTEEEEEEE
T ss_pred             cccc-ccccccccchhHHHHHHhhCceeeeeeeccccccccccceeeec--cccccccccccccccccccccceeeEeee
Confidence            7888 898888  589999999999999999999 7 699999999998  67777789999999999999999999999


Q ss_pred             ccCCCCCCCCcEEEEEecCC-eecccceeeEEE
Q psy274          152 NSWGPIGPDEGFFKIERGNN-ACGIETIAGYAT  183 (187)
Q Consensus       152 NSWG~~WG~~Gy~~i~~~~n-~cgi~~~~~~~~  183 (187)
                      ||||++||++|||||+|+.+ .|||++++++|+
T Consensus       187 NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~  219 (219)
T PF00112_consen  187 NSWGTDWGDNGYFRISYDYNNECGIESQAVYPI  219 (219)
T ss_dssp             -SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred             hhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence            99999999999999999987 999999999985

; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....

>PTZ00049 cathepsin C-like protein; Provisional

Probab=100.00  E-value=1.6e-46  Score=330.79  Aligned_cols=181  Identities=27%  Similarity=0.522  Sum_probs=150.4

Q ss_pred             CchhhHHHHhCC----------CccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCC
Q psy274            1 MLEGQYAIKTGK----------LVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYD   70 (187)
Q Consensus         1 a~E~~~~i~~~~----------~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~   70 (187)
                      +||+|++|++++          ...||+|+|+||+..+.||+||+ +..|++|+++.||++|++|||.   +..+.|...
T Consensus       417 alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC~GG~-~~~A~kya~~~GI~tEscYPY~---a~~g~C~~~  492 (693)
T PTZ00049        417 AFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGCNGGF-PYLVSKMAKLQGIPLDKVFPYT---ATEQTCPYQ  492 (693)
T ss_pred             HHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCcCCCc-HHHHHHHHHHCCCCcCCccCCc---CCCCCCCCC
Confidence            589999999753          13799999999998789999999 9999999988999999999998   666667532


Q ss_pred             CC---------------------------------------cceeeeccceeEeC---------ChHHHHHHHHhCCCEE
Q psy274           71 KS---------------------------------------KVKLFTGKDFLYFN---------GSETMKKILYKYGPLS  102 (187)
Q Consensus        71 ~~---------------------------------------~~~~~i~~~~~~i~---------~~~~ik~~l~~~gPV~  102 (187)
                      ..                                       ..+++++ +|..+.         ++++||++|+.+|||+
T Consensus       493 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~y~k-~y~yI~g~y~~~~~~~E~~Im~eI~~~GPVs  571 (693)
T PTZ00049        493 VDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPARWYAK-DYNYIGGCYGCNQCNGEKIMMNEIYRNGPIV  571 (693)
T ss_pred             CCCccccccccccccccccccccccccccccccccccccccccceeee-eeEEecccccccCCCCHHHHHHHHHhcCCEE
Confidence            11                                       1223455 666552         5789999999999999


Q ss_pred             EEEEC-ccccccCCceeeCCC----CCCCCC--------------cccEEEEEEEEeec--CCc--cEEEEEccCCCCCC
Q psy274          103 VGLNG-HLIHFYNGTPIKKND----EICSPN--------------AIGHAVLLVGYGKQ--DDI--PYWLARNSWGPIGP  159 (187)
Q Consensus       103 v~~~~-~~f~~y~~giy~~~~----~~~~~~--------------~~~Hav~iVGyg~~--~g~--~ywivkNSWG~~WG  159 (187)
                      ++|.+ ++|++|++|||+..+    ..|+..              ..+|||+|||||++  +|+  +|||||||||+.||
T Consensus       572 VsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WG  651 (693)
T PTZ00049        572 ASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITGWEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWG  651 (693)
T ss_pred             EEEEechhhhcCCCccccCcccccccccCCccccccccccccccccCceEEEEEEeccccCCCcccCEEEEECCCCCCcc
Confidence            99999 899999999998621    136421              36999999999964  454  79999999999999


Q ss_pred             CCcEEEEEecCCeecccceeeEEEEEe
Q psy274          160 DEGFFKIERGNNACGIETIAGYATIDV  186 (187)
Q Consensus       160 ~~Gy~~i~~~~n~cgi~~~~~~~~~~~  186 (187)
                      ++|||||+|+.|.||||++++++..|+
T Consensus       652 enGYfKI~RG~N~CGIEs~a~~~~pd~  678 (693)
T PTZ00049        652 KEGYFKIIRGKNFSGIESQSLFIEPDF  678 (693)
T ss_pred             cCceEEEEcCCCccCCccceeEEeeec
Confidence            999999999999999999999999986

>PTZ00364 dipeptidyl-peptidase I precursor; Provisional

Probab=100.00  E-value=4.7e-46  Score=324.10  Aligned_cols=182  Identities=20%  Similarity=0.405  Sum_probs=149.5

Q ss_pred             CchhhHHHHhC------CCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccc--cccCCCCCcccccCCCC
Q psy274            1 MLEGQYAIKTG------KLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDY--PYRNGNGEKFKCAYDKS   72 (187)
Q Consensus         1 a~E~~~~i~~~------~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~y--PY~~~~~~~~~C~~~~~   72 (187)
                      |||++++|+++      +.+.||+|+|+||+..++||+||+ +..|++|++++|+++|++|  ||....+..+.|.....
T Consensus       243 alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdGG~-p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~  321 (548)
T PTZ00364        243 AMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAGGF-PEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRP  321 (548)
T ss_pred             HHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCCCc-HHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCcc
Confidence            58999999984      468999999999997789999999 9999999988999999999  99843233346876544


Q ss_pred             cceeeeccce------eEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeC-----CC-CCCC----------CC
Q psy274           73 KVKLFTGKDF------LYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKK-----ND-EICS----------PN  128 (187)
Q Consensus        73 ~~~~~i~~~~------~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~-----~~-~~~~----------~~  128 (187)
                      ...++++ ++      ..+. ++++||++|+++|||+++|++ ++|+.|++|||..     .. ..|.          ..
T Consensus       322 ~~~y~~~-~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~  400 (548)
T PTZ00364        322 SRRYYFT-NYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFAS  400 (548)
T ss_pred             cceeeee-eeEEecceeecCCcHHHHHHHHHHcCCeEEEEEechHHHhcCCCCccCeeccccccccccccCCcccccccc
Confidence            4444444 44      3333 678899999999999999999 8999999999862     00 1111          13


Q ss_pred             cccEEEEEEEEee-cCCccEEEEEccCCC--CCCCCcEEEEEecCCeecccceeeEEEE
Q psy274          129 AIGHAVLLVGYGK-QDDIPYWLARNSWGP--IGPDEGFFKIERGNNACGIETIAGYATI  184 (187)
Q Consensus       129 ~~~Hav~iVGyg~-~~g~~ywivkNSWG~--~WG~~Gy~~i~~~~n~cgi~~~~~~~~~  184 (187)
                      ..+|||+|||||+ ++|.+|||||||||+  +|||+|||||+|+.|+||||+.++.++.
T Consensus       401 ~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~RG~N~CGIes~~v~~~~  459 (548)
T PTZ00364        401 NVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIARGVNAYNIESEVVVMYW  459 (548)
T ss_pred             cCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEEcCCCcccccceeeeeee
Confidence            5799999999996 578899999999999  9999999999999999999999997764

>PTZ00462 Serine-repeat antigen protein; Provisional

Probab=100.00  E-value=2.4e-41  Score=305.76  Aligned_cols=182  Identities=21%  Similarity=0.385  Sum_probs=146.6

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCC-----
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKS-----   72 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~-----   72 (187)
                      |+|++++|++++.+.||+|+|+||+..  +.||.||+.+..++.|+++. |+++|++|||... ...+.|+....     
T Consensus       564 aLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPYt~k-~~~g~Cp~~~~~w~n~  642 (1004)
T PTZ00462        564 HLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLYNYT-KVGEDCPDEEDHWMNL  642 (1004)
T ss_pred             HHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCCccC-CCCCCCCCCccccccc
Confidence            589999999999999999999999864  68999998344556887665 5899999999731 14557864321     


Q ss_pred             -------------cceeeeccceeEeCC----------hHHHHHHHHhCCCEEEEEECccccccC-CceeeCCCCCCCCC
Q psy274           73 -------------KVKLFTGKDFLYFNG----------SETMKKILYKYGPLSVGLNGHLIHFYN-GTPIKKNDEICSPN  128 (187)
Q Consensus        73 -------------~~~~~i~~~~~~i~~----------~~~ik~~l~~~gPV~v~~~~~~f~~y~-~giy~~~~~~~~~~  128 (187)
                                   ...+.+. +|..+..          ++.||++|+..|||+|+|.+++|+.|. +|||..  ..|+..
T Consensus       643 ~~~~kll~~~~~~~~~i~~k-gY~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdAsdf~~Y~~sGIyv~--~~Cgs~  719 (1004)
T PTZ00462        643 LDHGKILNHNKKEPNSLDGK-AYRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKAENVLGYEFNGKKVQ--NLCGDD  719 (1004)
T ss_pred             ccccccccccccccceeecc-ceEEecccccccchhhHHHHHHHHHHhcCCEEEEEEeehHHhhhcCCcccc--CCCCCC
Confidence                         0123344 5655541          368999999999999999996688884 899876  579876


Q ss_pred             cccEEEEEEEEeec-----CCccEEEEEccCCCCCCCCcEEEEEe-cCCeecccceeeEEEEEe
Q psy274          129 AIGHAVLLVGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNACGIETIAGYATIDV  186 (187)
Q Consensus       129 ~~~Hav~iVGyg~~-----~g~~ywivkNSWG~~WG~~Gy~~i~~-~~n~cgi~~~~~~~~~~~  186 (187)
                      .++|||+|||||++     ++++|||||||||+.||++|||||.| +.|.|||.....+|+++|
T Consensus       720 ~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t~~~fn~  783 (1004)
T PTZ00462        720 TADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHSVVIFNI  783 (1004)
T ss_pred             cCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchheeeeeEee
Confidence            78999999999964     25789999999999999999999998 689999999999999986

>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)

Probab=100.00  E-value=7.3e-40  Score=257.77  Aligned_cols=165  Identities=27%  Similarity=0.359  Sum_probs=141.9

Q ss_pred             CchhhHHHHhC--CCccCCHHHHhhhcCCC-----CCCCCCccchhhHH-HHHhCcccccccccccCCCCCcccccC---
Q psy274            1 MLEGQYAIKTG--KLVEFSKSQLVECAKQC-----SGCGGCDGLEQPIE-YTHQAGLESEKDYPYRNGNGEKFKCAY---   69 (187)
Q Consensus         1 a~E~~~~i~~~--~~~~lS~q~l~dc~~~~-----~gC~gG~~~~~a~~-~~~~~Gi~~e~~yPY~~~~~~~~~C~~---   69 (187)
                      ++|++++++.+  +.++||+|+|++|....     .+|.||. +..++. ++++.|+++|++|||.   .....|..   
T Consensus        29 ~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~-~~~~~~~~~~~~Gi~~e~~~Py~---~~~~~~~~~~~  104 (223)
T cd02619          29 ALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGG-PLSALLKLVALKGIPPEEDYPYG---AESDGEEPKSE  104 (223)
T ss_pred             HHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCc-HHHHHHHHHHHcCCCccccCCCC---CCCCCCCCCCc
Confidence            58999999998  89999999999999763     6999999 999998 7889999999999999   55555542   


Q ss_pred             -CCCcceeeeccceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceee---CCCCCCCCCcccEEEEEEEEeec
Q psy274           70 -DKSKVKLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIK---KNDEICSPNAIGHAVLLVGYGKQ  142 (187)
Q Consensus        70 -~~~~~~~~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~---~~~~~~~~~~~~Hav~iVGyg~~  142 (187)
                       ......+++. .|..+.  ++++||++|+++|||+++|.+ +.|..|++|++.   .....+....++|||+|||||++
T Consensus       105 ~~~~~~~~~~~-~y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~  183 (223)
T cd02619         105 AALNAAKVKLK-DYRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVIVGYDDN  183 (223)
T ss_pred             cchhhcceeec-ceeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccCccccccccccccCCCccCCeEEEEEeecCC
Confidence             2344667888 998887  579999999999999999999 999999999873   11134556678999999999988


Q ss_pred             C--CccEEEEEccCCCCCCCCcEEEEEecC
Q psy274          143 D--DIPYWLARNSWGPIGPDEGFFKIERGN  170 (187)
Q Consensus       143 ~--g~~ywivkNSWG~~WG~~Gy~~i~~~~  170 (187)
                      .  +++|||||||||+.||++||+||+++.
T Consensus       184 ~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~  213 (223)
T cd02619         184 YVEGKGAFIVKNSWGTDWGDNGYGRISYED  213 (223)
T ss_pred             CCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence            6  899999999999999999999999984

Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str

>smart00645 Pept_C1 Papain family cysteine protease

Probab=100.00  E-value=1.1e-39  Score=249.83  Aligned_cols=135  Identities=43%  Similarity=0.870  Sum_probs=120.5

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCCcceeee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFT   78 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i   78 (187)
                      +||+++++++++.++||+|+|++|... +.+|+||+ +..|+++++++ |+++|++|||+   .                
T Consensus        33 ~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~~PY~---~----------------   92 (174)
T smart00645       33 ALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGL-PDNAFEYIKKNGGLETESCYPYT---G----------------   92 (174)
T ss_pred             HHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcC-HHHHHHHHHHcCCcccccccCcc---c----------------
Confidence            589999999999999999999999986 67999999 99999998776 99999999999   3                


Q ss_pred             ccceeEeCChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeec-CCccEEEEEccCCCC
Q psy274           79 GKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ-DDIPYWLARNSWGPI  157 (187)
Q Consensus        79 ~~~~~~i~~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~  157 (187)
                                             ++.+.+.+|+.|++|||+.  +.|....++|+|+|||||.+ ++++|||||||||+.
T Consensus        93 -----------------------~~~~~~~~f~~Y~~Gi~~~--~~~~~~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~  147 (174)
T smart00645       93 -----------------------SVAIDASDFQFYKSGIYDH--PGCGSGTLDHAVLIVGYGTEENGKDYWIVKNSWGTD  147 (174)
T ss_pred             -----------------------EEEEEcccccCCcCeEECC--CCCCCCcccEEEEEEEEeecCCCeeEEEEECCCCCC
Confidence                                   4555556699999999987  56766557999999999987 889999999999999


Q ss_pred             CCCCcEEEEEecC-Ceecccceee
Q psy274          158 GPDEGFFKIERGN-NACGIETIAG  180 (187)
Q Consensus       158 WG~~Gy~~i~~~~-n~cgi~~~~~  180 (187)
                      ||++|||||.|+. |.|+|+....
T Consensus       148 WG~~G~~~i~~~~~~~c~i~~~~~  171 (174)
T smart00645      148 WGENGYFRIARGKNNECGIEASVA  171 (174)
T ss_pred             cccCeEEEEEcCCCCccCceeeee
Confidence            9999999999997 9999977653

>KOG1544|consensus

Probab=100.00  E-value=4.8e-38  Score=253.37  Aligned_cols=177  Identities=25%  Similarity=0.445  Sum_probs=144.1

Q ss_pred             hhHHHHhCC--CccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccccccccccCC-CCCcccccCCCC-------
Q psy274            4 GQYAIKTGK--LVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG-NGEKFKCAYDKS-------   72 (187)
Q Consensus         4 ~~~~i~~~~--~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~-~~~~~~C~~~~~-------   72 (187)
                      .|++|++..  ...||+|+|++|... ..||+||. +..|+=|+++.|++...||||... .+..+.|.....       
T Consensus       246 DRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~-lDRAWWYlRKrGvVsdhCYP~~~dQ~~~~~~C~m~sR~~grgkR  324 (470)
T KOG1544|consen  246 DRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGR-LDRAWWYLRKRGVVSDHCYPFSGDQAGPAPPCMMHSRAMGRGKR  324 (470)
T ss_pred             ceeEEeeccccccccChHHhcchhhhhhccCccCc-ccchheeeecccccccccccccCCCCCCCCCceeeccccCcccc
Confidence            456666543  688999999999876 79999999 999999999999999999999842 234444532221       


Q ss_pred             -------------cceeeeccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCC-----CcccE
Q psy274           73 -------------KVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSP-----NAIGH  132 (187)
Q Consensus        73 -------------~~~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~-----~~~~H  132 (187)
                                   ...++++ .-++|+ ++++||++||++|||-+.|.+ ++|+.|++|||+..+.....     ..+.|
T Consensus       325 qat~~CPn~~~~Sn~iyq~t-PPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~gtH  403 (470)
T KOG1544|consen  325 QATAHCPNSYVNSNDIYQVT-PPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRHGTH  403 (470)
T ss_pred             cccCcCCCcccccCceeeec-CCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhcccc
Confidence                         1456666 444455 999999999999999999999 99999999999884322222     25799


Q ss_pred             EEEEEEEeecC-----CccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEE
Q psy274          133 AVLLVGYGKQD-----DIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYA  182 (187)
Q Consensus       133 av~iVGyg~~~-----g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~  182 (187)
                      +|.|.|||++.     ..+||+..||||+.||++|||||.||.|+|.||++++.|
T Consensus       404 sVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgA  458 (470)
T KOG1544|consen  404 SVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGA  458 (470)
T ss_pred             eEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhh
Confidence            99999999763     257999999999999999999999999999999998765

>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=2.1e-17  Score=136.30  Aligned_cols=132  Identities=23%  Similarity=0.262  Sum_probs=85.4

Q ss_pred             CCccchhhHHH-HHhCcccccccccccCCCCCcccccCCCCcceeeeccceeEeC------ChHHHHHHHHhCCCEEEEE
Q psy274           33 GCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFN------GSETMKKILYKYGPLSVGL  105 (187)
Q Consensus        33 gG~~~~~a~~~-~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~i~------~~~~ik~~l~~~gPV~v~~  105 (187)
                      +|. ...+..| .+..|-+.|.+-||.   ...-.|.... +..-++. .-..++      +...||+++...|-+...|
T Consensus       168 ~g~-~~m~~a~l~e~sgpv~et~d~y~---~~s~~~~~~~-p~~k~~~-~~~~i~~~~~~LdnG~i~~~~~~yg~~s~~~  241 (372)
T COG4870         168 GGN-ADMSAAYLTEWSGPVYETDDPYS---ENSYFSPTNL-PVTKHVQ-EAQIIPSRKKYLDNGNIKAMFGFYGAVSSSM  241 (372)
T ss_pred             CCc-cccccccccccCCcchhhcCccc---cccccCCcCC-chhhccc-cceecccchhhhcccchHHHHhhhcccccee
Confidence            455 5555556 566788888888888   4444443211 1111111 111122      6777999999999888777


Q ss_pred             EC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeec----------CCccEEEEEccCCCCCCCCcEEEEEecCCee
Q psy274          106 NG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ----------DDIPYWLARNSWGPIGPDEGFFKIERGNNAC  173 (187)
Q Consensus       106 ~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~----------~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~c  173 (187)
                      .+  ..+....-+.+..    .+....+|||+||||++.          .|.+.||||||||+.||++|||||++..-.-
T Consensus       242 ~id~~~~~~~~~~~~~~----~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~ya~~  317 (372)
T COG4870         242 YIDATNSLGICIPYPYV----DSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYYALN  317 (372)
T ss_pred             EEecccccccccCCCCC----CccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeeeccc
Confidence            66  3333333333433    121468999999999964          2467999999999999999999999976333


Q ss_pred             c
Q psy274          174 G  174 (187)
Q Consensus       174 g  174 (187)
                      |
T Consensus       318 g  318 (372)
T COG4870         318 G  318 (372)
T ss_pred             c
Confidence            4

>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)

Probab=99.72  E-value=2.2e-17  Score=141.68  Aligned_cols=83  Identities=19%  Similarity=0.268  Sum_probs=66.5

Q ss_pred             ChHHHH----HHHHhCCCEEEEEECccccccCCceeeCCCC------------------CCCCCcccEEEEEEEEeec-C
Q psy274           87 GSETMK----KILYKYGPLSVGLNGHLIHFYNGTPIKKNDE------------------ICSPNAIGHAVLLVGYGKQ-D  143 (187)
Q Consensus        87 ~~~~ik----~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~------------------~~~~~~~~Hav~iVGyg~~-~  143 (187)
                      ..+.++    +.|..++||.++.++..|+.|++||+...--                  .|.....+|||+||||+.+ +
T Consensus       293 p~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~  372 (437)
T cd00585         293 PMDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDED  372 (437)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCC
Confidence            455565    6778888999999997678999999965100                  1333356899999999964 4


Q ss_pred             Cc-cEEEEEccCCCCCCCCcEEEEEec
Q psy274          144 DI-PYWLARNSWGPIGPDEGFFKIERG  169 (187)
Q Consensus       144 g~-~ywivkNSWG~~WG~~Gy~~i~~~  169 (187)
                      |+ .||+|+||||+.||++||++|+++
T Consensus       373 g~p~yw~VkNSWG~~~G~~Gy~~ms~~  399 (437)
T cd00585         373 GKPVKWKVENSWGEKVGKKGYFVMSDD  399 (437)
T ss_pred             CCcceEEEEcccCCCCCCCcceehhHH
Confidence            76 699999999999999999999986

The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w

>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.97  E-value=2.5e-09  Score=92.32  Aligned_cols=79  Identities=20%  Similarity=0.354  Sum_probs=56.2

Q ss_pred             HHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCC--------------------CCcccEEEEEEEEee-cCCc-c
Q psy274           89 ETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICS--------------------PNAIGHAVLLVGYGK-QDDI-P  146 (187)
Q Consensus        89 ~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~--------------------~~~~~Hav~iVGyg~-~~g~-~  146 (187)
                      +.+...|..+-||..+-++..+...+.||.+.  +...                    ....+|||+|+|... ++|+ .
T Consensus       300 ~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~--~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g~p~  377 (438)
T PF03051_consen  300 DAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDT--DLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDGKPV  377 (438)
T ss_dssp             HHHHHHHHTT--EEEEEETTTTEETTTTEE-T--TSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTSSEE
T ss_pred             HHHHHHHHcCCcEEEeccCCccccccchhhcc--chhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCCCee
Confidence            34455677878999999995456667888765  2110                    113589999999995 6776 5


Q ss_pred             EEEEEccCCCCCCCCcEEEEEec
Q psy274          147 YWLARNSWGPIGPDEGFFKIERG  169 (187)
Q Consensus       147 ywivkNSWG~~WG~~Gy~~i~~~  169 (187)
                      +|+|+||||+..|.+||+.++..
T Consensus       378 ~wkVeNSWG~~~g~kGy~~msd~  400 (438)
T PF03051_consen  378 RWKVENSWGTDNGDKGYFYMSDD  400 (438)
T ss_dssp             EEEEE-SBTTTSTBTTEEEEEHH
T ss_pred             EEEEEcCCCCCCCCCcEEEECHH
Confidence            99999999999999999999864

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....

>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]

Probab=97.56  E-value=6.3e-05  Score=62.43  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=56.0

Q ss_pred             ChHHHHHH----HHhCCCEEEEEECccccccCCceeeCCC---C----------CC-----CCCcccEEEEEEEEe-ecC
Q psy274           87 GSETMKKI----LYKYGPLSVGLNGHLIHFYNGTPIKKND---E----------IC-----SPNAIGHAVLLVGYG-KQD  143 (187)
Q Consensus        87 ~~~~ik~~----l~~~gPV~v~~~~~~f~~y~~giy~~~~---~----------~~-----~~~~~~Hav~iVGyg-~~~  143 (187)
                      +.+-+|++    +..+-||-.+-++..++.-+.||...+-   +          ..     +.....||++|.|.+ +++
T Consensus       296 ~me~lkkl~~~q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~  375 (444)
T COG3579         296 DMERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDET  375 (444)
T ss_pred             cHHHHHHHHHHHHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccC
Confidence            44455443    4455688888777777777777664410   0          00     111247999999999 555


Q ss_pred             Cc-cEEEEEccCCCCCCCCcEEEEEe
Q psy274          144 DI-PYWLARNSWGPIGPDEGFFKIER  168 (187)
Q Consensus       144 g~-~ywivkNSWG~~WG~~Gy~~i~~  168 (187)
                      |. --|.|.||||.+=|.+|||-.+-
T Consensus       376 g~p~rwkVENSWG~d~G~~GyfvaSd  401 (444)
T COG3579         376 GNPLRWKVENSWGKDVGKKGYFVASD  401 (444)
T ss_pred             CCceeeEeecccccccCCCceEeehH
Confidence            44 47999999999999999997763

>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A

Probab=96.30  E-value=0.0067  Score=43.46  Aligned_cols=55  Identities=24%  Similarity=0.449  Sum_probs=34.1

Q ss_pred             ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccC
Q psy274           87 GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSW  154 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW  154 (187)
                      +.+.|+++|.++.||++.+..  ...   ....+.       .....|.|+|+||.++.   +++|..+|
T Consensus        88 ~~~~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~-------~~~~~H~vvi~Gy~~~~---~~~v~DP~  144 (144)
T PF13529_consen   88 SFDDIKQEIDAGRPVIVSVNSGWRPP---NGDGYD-------GTYGGHYVVIIGYDEDG---YVYVNDPW  144 (144)
T ss_dssp             -HHHHHHHHHTT--EEEEEETTSS-----TTEEEE-------E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred             cHHHHHHHHHCCCcEEEEEEcccccC---CCCCcC-------CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence            789999999998899999974  122   111121       22479999999999533   78887776

>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate

Probab=92.91  E-value=0.59  Score=36.85  Aligned_cols=64  Identities=23%  Similarity=0.367  Sum_probs=38.4

Q ss_pred             ChHHHHHHHHhCCCEEEEEECcccccc--CCceeeCCCCCC--C-CCcccEEEEEEEEeecCCccEEEEEc
Q psy274           87 GSETMKKILYKYGPLSVGLNGHLIHFY--NGTPIKKNDEIC--S-PNAIGHAVLLVGYGKQDDIPYWLARN  152 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y--~~giy~~~~~~~--~-~~~~~Hav~iVGyg~~~g~~ywivkN  152 (187)
                      +.++|..+|..++|+++-++..-+.-.  +.-......+.|  . ....+|.|+|+||+...++  +.+||
T Consensus       112 s~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~~~~--~~yrd  180 (212)
T PF09778_consen  112 SIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAATKE--FEYRD  180 (212)
T ss_pred             cHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCCCCe--EEEeC
Confidence            799999999999988887776333200  111111100122  1 2356899999999954432  55554

>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=91.05  E-value=1.6  Score=33.33  Aligned_cols=67  Identities=18%  Similarity=0.322  Sum_probs=43.7

Q ss_pred             ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEee-cCCccEEEEEccCCCCCCCCcEEE
Q psy274           87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK-QDDIPYWLARNSWGPIGPDEGFFK  165 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~-~~g~~ywivkNSWG~~WG~~Gy~~  165 (187)
                      +.+++++.+.++.|+.+....          ...    ......+||++||||-. .+|.++.++-|=|     +++++-
T Consensus        90 s~~eV~~~~~~nk~i~i~~~~----------v~~----~~~~~~gHAlavvGya~~~~g~~~y~~WNPW-----~~~~~~  150 (175)
T PF05543_consen   90 SFDEVKKLIDNNKGIAILADR----------VEQ----TNGPHAGHALAVVGYAKPNNGQKTYYFWNPW-----WNDVMI  150 (175)
T ss_dssp             -HHHHHHHHHTT-EEEEEEEE----------TTS----CTTB--EEEEEEEEEEEETTSEEEEEEE-TT------SS-EE
T ss_pred             CHHHHHHHHHcCCCeEEEecc----------ccc----CCCCccceeEEEEeeeecCCCCeEEEEeCCc-----cCCcEE
Confidence            788999999999999887652          111    12335799999999997 4568999999988     566777


Q ss_pred             EEecCCe
Q psy274          166 IERGNNA  172 (187)
Q Consensus       166 i~~~~n~  172 (187)
                      ++...+.
T Consensus       151 ~sa~s~~  157 (175)
T PF05543_consen  151 QSAKSNI  157 (175)
T ss_dssp             EETT--E
T ss_pred             EecCCCc
Confidence            7665443

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.

>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase

Probab=90.89  E-value=0.57  Score=38.60  Aligned_cols=55  Identities=16%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEE
Q psy274           87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLA  150 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywiv  150 (187)
                      ..+.|++.|.++.||.+.++.-.+. |... |      .......|.|+|+||++++ ..+.++
T Consensus        77 ~~~~l~~~l~~g~pv~~~~D~~~lp-y~~~-~------~~~~~~~H~i~v~G~d~~~-~~~~v~  131 (317)
T PF14399_consen   77 AWEELKEALDAGRPVIVWVDMYYLP-YRPN-Y------YKKHHADHYIVVYGYDEEE-DVFYVS  131 (317)
T ss_pred             HHHHHHHHHhCCCceEEEeccccCC-CCcc-c------cccccCCcEEEEEEEeCCC-CEEEEE
Confidence            5678999999977999997752221 1111 1      1233468999999999654 334444

>KOG4128|consensus

Probab=88.15  E-value=0.044  Score=45.84  Aligned_cols=95  Identities=19%  Similarity=0.190  Sum_probs=57.4

Q ss_pred             ChHHHHHHH----HhCCCEEEEEECccccccCCceeeCCC---C--------C---CC-----CCcccEEEEEEEEe-ec
Q psy274           87 GSETMKKIL----YKYGPLSVGLNGHLIHFYNGTPIKKND---E--------I---CS-----PNAIGHAVLLVGYG-KQ  142 (187)
Q Consensus        87 ~~~~ik~~l----~~~gPV~v~~~~~~f~~y~~giy~~~~---~--------~---~~-----~~~~~Hav~iVGyg-~~  142 (187)
                      +.+-|++.+    ..+.||-.+-++..+..-++|+.+-.-   +        .   ..     ...-.||+++.|.+ .+
T Consensus       305 ~~d~l~k~vv~sl~~~kaVwfgcd~~k~~~~K~G~~dl~l~~~~l~fG~~l~~~~KAeRl~y~eSlmthAml~T~v~~kd  384 (457)
T KOG4128|consen  305 SMDILMKIVVTSLEGDKAVWFGCDIRKAISLKSGPLDLRLHQFDLLFGFKLGESTKAERLDYRESLMTHAMLLTSVGLKD  384 (457)
T ss_pred             CHHHHHHHHHHHhcCCcceEEecccHhhhhcccCccchhhccCceeeeeeccccchhhhhhHHHHHHHHHHHhhhccccC
Confidence            455555543    345577777666556666666432200   0        0   00     01247999999999 32


Q ss_pred             ---CCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274          143 ---DDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       143 ---~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                         .+-.-|.|.||||++-|.+|+.++...    -.+.+++-.+||
T Consensus       385 ~~~g~~~~~rVenswgkd~gkkg~~~mt~e----wf~EY~feiVVd  426 (457)
T KOG4128|consen  385 PATGGLNEHRVENSWGKDLGKKGVNKMTAE----WFREYAFEIVVD  426 (457)
T ss_pred             cccCCchhhhhhchhhhhccccchhhhhHH----HHHhhheeEEee
Confidence               344579999999999999999665432    234555555555

>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.54  E-value=1.5  Score=33.70  Aligned_cols=47  Identities=23%  Similarity=0.314  Sum_probs=35.8

Q ss_pred             ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                      ++.+||..|.++.||.+..-.  |..                ..-|+|+|+||+    +.++..-+.||
T Consensus       122 sl~~ik~ql~kg~PV~iw~T~--~~~----------------~s~H~v~itgyD----k~n~yynDpyG  168 (195)
T COG4990         122 SLSDIKGQLLKGRPVVIWVTN--FHS----------------YSIHSVLITGYD----KYNIYYNDPYG  168 (195)
T ss_pred             cHHHHHHHHhcCCcEEEEEec--ccc----------------cceeeeEeeccc----ccceEeccccc
Confidence            889999999999999876653  211                347999999999    44566667774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	187
1m6d_A	214	Crystal Structure Of Human Cathepsin F Length = 214		2e-24
8pch_A	220	Crystal Structure Of Porcine Cathepsin H Determined		1e-23
2f7d_A	215	A Mutant Rabbit Cathepsin K With A Nitrile Inhibito		1e-21
3ovz_A	213	Cathepsin K In Complex With A Covalent Inhibitor Wi		2e-21
1mem_A	215	Crystal Structure Of Cathepsin K Complexed With A P		2e-21
1snk_A	214	Cathepsin K Complexed With Carbamate Derivatized No		2e-21
1u9v_A	217	Crystal Structure Of The Cysteine Protease Human Ca		2e-21
7pck_A	314	Crystal Structure Of Wild Type Human Procathepsin K		3e-21
3h7d_A	215	The Crystal Structure Of The Cathepsin K Variant M5		5e-21
1vsn_A	215	Crystal Structure Of A Potent Small Molecule Inhibi		2e-20
2o6x_A	310	Crystal Structure Of Procathepsin L1 From Fasciola		4e-20
1glo_A	217	Crystal Structure Of Cys25ser Mutant Of Human Cathe		5e-20
3qt4_A	329	Structure Of Digestive Procathepsin L 3 Of Tenebrio		6e-20
2p7u_A	215	The Crystal Structure Of Rhodesain, The Major Cyste		7e-20
2c0y_A	315	The Crystal Structure Of A Cys25ala Mutant Of Human		1e-19
2b1m_A	246	Crystal Structure Of A Papain-Fold Protein Without		1e-19
3ovx_A	218	Cathepsin S In Complex With A Covalent Inhibitor Wi		1e-19
3kwn_A	219	Cathepsin S In Complex With Thioether Acetamide P3		1e-19
3mpe_A	220	Crystal Structure Of Human Cathepsin-S C25s Mutant		1e-19
3iej_A	222	Pyrazole-Based Cathepsin S Inhibitors With Arylalky		1e-19
2f1g_A	220	Cathepsin S In Complex With Non-Covalent 2-(Benzoxa		1e-19
1ms6_A	222	Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L		1e-19
3n3g_A	217	4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri		1e-19
2fq9_A	225	Cathepsin S With Nitrile Inhibitor Length = 225		1e-19
1npz_A	217	Crystal Structures Of Cathepsin S Inhibitor Complex		2e-19
3h6s_A	221	Strucure Of Clitocypin - Cathepsin V Complex Length		2e-19
2g6d_A	217	Human Cathepsin S Mutant With Vinyl Sulfone Inhibit		2e-19
1fh0_A	221	Crystal Structure Of Human Cathepsin V Complexed Wi		2e-19
2fye_A	217	Mutant Human Cathepsin S With Irreversible Inhibito		9e-19
3qj3_A	331	Structure Of Digestive Procathepsin L2 Proteinase F		2e-16
3kse_A	220	Unreduced Cathepsin L In Complex With Stefin A Leng		4e-16
3iv2_A	220	Crystal Structure Of Mature Apo-Cathepsin L C25a Mu		1e-15
3hha_A	220	Crystal Structure Of Cathepsin L In Complex With Az		1e-15
3of8_A	221	Structural Basis For Reversible And Irreversible In		1e-15
3h89_A	220	A Combined Crystallographic And Molecular Dynamics		1e-15
2nqd_B	221	Crystal Structure Of Cysteine Protease Inhibitor, C		1e-15
1cs8_A	316	Crystal Structure Of Procathepsin L Length = 316		1e-15
3bc3_A	220	Exploring Inhibitor Binding At The S Subsites Of Ca		1e-15
3hwn_A	258	Cathepsin L With Az13010160 Length = 258		2e-15
1aim_A	215	Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor		3e-15
3p5u_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		3e-15
1cjl_A	312	Crystal Structure Of A Cysteine Protease Proform Le		4e-15
3p5w_A	220	Actinidin From Actinidia Arguta Planch (Sarusashi)		4e-15
2act_A	220	Crystallographic Refinement Of The Structure Of Act		4e-15
1aec_A	218	Crystal Structure Of Actinidin-E-64 Complex+ Length		7e-15
1ewp_A	215	Cruzain Bound To Mor-Leu-Hpq Length = 215		1e-14
3iut_A	221	The Crystal Structure Of Cruzain In Complex With A		6e-14
3hd3_A	215	High Resolution Crystal Structure Of Cruzain Bound		6e-14
1jqp_A	438	Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric		9e-14
2fo5_A	262	Crystal Structure Of Recombinant Barley Cysteine En		1e-13
2vhs_A	217	Cathsilicatein, A Chimera Length = 217		3e-13
3pdf_A	441	Discovery Of Novel Cyanamide-Based Inhibitors Of Ca		6e-13
1cqd_A	221	The 2.1 Angstrom Structure Of A Cysteine Protease W		2e-12
3d6s_A	223	Crystal Structure Of Mite Allergen Der F 1 Length =		4e-12
3u8e_A	222	Crystal Structure Of Cysteine Protease From Bulbs O		5e-12
1iwd_A	215	Proposed Amino Acid Sequence And The 1.63 Angstrom		7e-12
2bdz_A	214	Mexicain From Jacaratia Mexicana Length = 214		7e-12
1s4v_A	229	The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst		8e-12
2pns_A	208	1.9 Angstrom Resolution Crystal Structure Of A Plan		2e-11
3bcn_A	209	Crystal Structure Of A Papain-Like Cysteine Proteas		2e-11
1yal_A	218	Carica Papaya Chymopapain At 1.7 Angstroms Resoluti		4e-11
1cpj_A	260	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-09
1mir_A	322	Rat Procathepsin B Length = 322		1e-09
1cte_A	254	Crystal Structures Of Recombinant Rat Cathepsin B A		1e-09
3f75_A	224	Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In		1e-09
3qsd_A	254	Structure Of Cathepsin B1 From Schistosoma Mansoni		2e-09
1pbh_A	317	Crystal Structure Of Human Recombinant Procathepsin		3e-09
1gmy_A	261	Cathepsin B Complexed With Dipeptidyl Nitrile Inhib		3e-09
3ai8_B	256	Cathepsin B In Complex With The Nitroxoline Length		3e-09
3k9m_A	254	Cathepsin B In Complex With Stefin A Length = 254		4e-09
3cbj_A	266	Chagasin-cathepsin B Complex Length = 266		4e-09
1qdq_A	253	X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074		4e-09
1huc_B	205	The Refined 2.15 Angstroms X-Ray Crystal Structure		4e-09
3hhi_A	325	Crystal Structure Of Cathepsin B From T. Brucei In		5e-09
4hwy_A	340	Trypanosoma Brucei Procathepsin B Solved From 40 Fs		5e-09
3mor_A	317	Crystal Structure Of Cathepsin B From Trypanosoma B		5e-09
3bpm_A	243	Crystal Structure Of Falcipain-3 With Its Inhibitor		6e-09
1ito_A	256	Crystal Structure Analysis Of Bovine Spleen Catheps		6e-09
1o0e_A	208	1.9 Angstrom Crystal Structure Of A Plant Cysteine		8e-09
1sp4_B	205	Crystal Structure Of Ns-134 In Complex With Bovine		8e-09
1k3b_C	69	Crystal Structure Of Human Dipeptidyl Peptidase I (		2e-08
3pnr_A	240	Structure Of Pbicp-C In Complex With Falcipain-2 Le		2e-08
1yvb_A	241	The Plasmodium Falciparum Cysteine Protease Falcipa		3e-08
1mhw_A	175	Design Of Non-covalent Inhibitors Of Human Cathepsi		4e-08
1icf_A	175	Crystal Structure Of Mhc Class Ii Associated P41 Ii		4e-08
1ef7_A	242	Crystal Structure Of Human Cathepsin X Length = 242		4e-08
1deu_A	277	Crystal Structure Of Human Procathepsin X: A Cystei		6e-08
3f5v_A	222	C2 Crystal Form Of Mite Allergen Der P 1 Length = 2		2e-07
1xkg_A	312	Crystal Structure Of The Major House Dust Mite Alle		2e-07
2as8_A	222	Crystal Structure Of Mature And Fully Active Der P		2e-07
3rvw_A	222	Crystal Structure Of Der P 1 Complexed With Fab 4c1		4e-07
3ima_A	212	Complex Strcuture Of Tarocystatin And Papain Length		9e-07
1khp_A	212	Monoclinic Form Of Papain/zlfg-dam Covalent Complex		9e-07
3tnx_A	363	Structure Of The Precursor Of A Thermostable Varian		1e-06
1ppo_A	216	Determination Of The Structure Of Papaya Protease O		1e-06
1stf_E	212	The Refined 2.4 Angstroms X-Ray Crystal Structure O		1e-06
1pip_A	212	Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al		1e-06
1ppp_A	212	Crystal Structure Of Papain-E64-C Complex. Binding		1e-06
1meg_A	216	Crystal Structure Of A Caricain D158e Mutant In Com		1e-06
3ch2_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		1e-06
2wbf_X	265	Crystal Structure Analysis Of Sera5e From Plasmodiu		2e-06
2cio_A	212	The High Resolution X-Ray Structure Of Papain Compl		2e-06
1gec_E	216	Glycyl Endopeptidase-complex With Benzyloxycarbonyl		4e-06
1pci_A	322	Procaricain Length = 322		2e-05
3ioq_A	213	Crystal Structure Of The Carica Candamarcensis Cyst		1e-04

>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214

Iteration: 1
 Score =  108 bits (270), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 96/184 (52%), Gaps = 3/184 (1%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EGQ+ +  G L+  S+ +L++C K    C G           +  GLE+E DY Y+   
Sbjct: 34  VEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSYQ--- 90
Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKN 121
           G    C +   K K++           + +   L K GP+SV +N   + FY     +  
Sbjct: 91  GHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPL 150
Query: 122 DEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGY 181
             +CSP  I HAVLLVGYG++ D+P+W  +NSWG    ++G++ + RG+ ACG+ T+A  
Sbjct: 151 RPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASS 210
Query: 182 ATID 185
           A +D
Sbjct: 211 AVVD 214

>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220

Iteration: 1
 Score =  105 bits (263), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 69/190 (36%), Positives = 98/190 (51%), Gaps = 19/190 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYT-HQAGLESEKDYPYRN 59
           LE   AI TGK++  ++ QLV+CA+  +  G   GL  Q  EY  +  G+  E  YPY+ 
Sbjct: 35  LESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK- 93
Query: 60  GNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGL---NGHLIH--- 111
             G+   C +   K   F  KD   +  N  E M + +  Y P+S      N  L++   
Sbjct: 94  --GQDDHCKFQPDKAIAFV-KDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKG 150
Query: 112 FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            Y+ T   K     +P+ + HAVL VGYG+++ IPYW+ +NSWGP     G+F IERG N
Sbjct: 151 IYSSTSCHK-----TPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKN 205
Query: 172 ACGIETIAGY 181
            CG+   A Y
Sbjct: 206 MCGLAACASY 215

>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215

Iteration: 1
 Score = 99.4 bits (246), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           LEGQ   KTGKL+  S   LV+C  +  GCGG   +    +Y  +  G++SE  YPY   
Sbjct: 34  LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQRNRGIDSEDAYPYV-- 90
Query: 61  NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
            G+   C Y+ + K     G   +     + +K+ + + GP+SV ++  L  F   +   
Sbjct: 91  -GQDESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
             DE CS + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R  NNACGI  +
Sbjct: 150 YYDENCSSDNLNHAVLAVGYGIQKGNKHWIIKNSWGESWGNKGYILMARNKNNACGIANL 209
Query: 179 AGYATI 184
           A +  +
Sbjct: 210 ASFPKM 215

>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           LEGQ   KTGKL+  S   LV+C  +  GCGG   +    +Y  +  G++SE  YPY   
Sbjct: 32  LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 88
Query: 61  NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
            G++  C Y+ + K     G   +     + +K+ + + GP+SV ++  L  F   +   
Sbjct: 89  -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 147
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
             DE C+ + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R  NNACGI  +
Sbjct: 148 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 207
Query: 179 AGYATI 184
           A +  +
Sbjct: 208 ASFPKM 213

>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           LEGQ   KTGKL+  S   LV+C  +  GCGG   +    +Y  +  G++SE  YPY   
Sbjct: 34  LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 90
Query: 61  NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
            G++  C Y+ + K     G   +     + +K+ + + GP+SV ++  L  F   +   
Sbjct: 91  -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
             DE C+ + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R  NNACGI  +
Sbjct: 150 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 209
Query: 179 AGYATI 184
           A +  +
Sbjct: 210 ASFPKM 215

>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           LEGQ   KTGKL+  S   LV+C  +  GCGG   +    +Y  +  G++SE  YPY   
Sbjct: 33  LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 89
Query: 61  NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
            G++  C Y+ + K     G   +     + +K+ + + GP+SV ++  L  F   +   
Sbjct: 90  -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 148
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
             DE C+ + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R  NNACGI  +
Sbjct: 149 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 208
Query: 179 AGYATI 184
           A +  +
Sbjct: 209 ASFPKM 214

>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           LEGQ   KTGKL+  S   LV+C  +  GCGG   +    +Y  +  G++SE  YPY   
Sbjct: 36  LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 92
Query: 61  NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
            G++  C Y+ + K     G   +     + +K+ + + GP+SV ++  L  F   +   
Sbjct: 93  -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 151
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
             DE C+ + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R  NNACGI  +
Sbjct: 152 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 211
Query: 179 AGYATI 184
           A +  +
Sbjct: 212 ASFPKM 217

>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314

Iteration: 1
 Score = 98.2 bits (243), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 97/186 (52%), Gaps = 7/186 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           LEGQ   KTGKL+  S   LV+C  +  GCGG   +    +Y  +  G++SE  YPY   
Sbjct: 133 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 189
Query: 61  NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
            G++  C Y+ + K     G   +     + +K+ + + GP+SV ++  L  F   +   
Sbjct: 190 -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 248
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
             DE C+ + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R  NNACGI  +
Sbjct: 249 YYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANL 308
Query: 179 AGYATI 184
           A +  +
Sbjct: 309 ASFPKM 314

>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215

Iteration: 1
 Score = 97.1 bits (240), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/186 (33%), Positives = 96/186 (51%), Gaps = 7/186 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           LEGQ   KTGKL+  S   LV+C  +  GCGG   +    +Y  +  G++SE  YPY   
Sbjct: 34  LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG-GYMTNAFQYVQKNRGIDSEDAYPYV-- 90
Query: 61  NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
            G++  C Y+ + K     G   +     + +K+ + + GP+SV ++  L  F   +   
Sbjct: 91  -GQEESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGV 149
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
             DE C+ + + HAVL VGYG+     +W+ +NSWG      G+ K+ R  NNACGI  +
Sbjct: 150 YYDESCNSDNLNHAVLAVGYGESKGNKHWIIKNSWGENWGMGGYIKMARNKNNACGIANL 209
Query: 179 AGYATI 184
           A +  +
Sbjct: 210 ASFPKM 215

>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/183 (33%), Positives = 91/183 (49%), Gaps = 7/183 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNG 60
           LEGQ    TG L+  +   LV+C  +  GCGG   +    +Y  +  G++SE  YPY   
Sbjct: 34  LEGQLKKATGALLNLAPQNLVDCVSENDGCGG-GYMTNAFQYVQRNRGIDSEDAYPYV-- 90
Query: 61  NGEKFKCAYDKS-KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
            G+   C Y+ + K     G   +       +K+ +   GP+SV ++  L  F   +   
Sbjct: 91  -GQDESCMYNPTGKAAKCRGYREIPEGNEAALKRAVAAVGPVSVAIDASLTSFQFYSAGV 149
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETI 178
             DE CS +A+ HAVL VGYG Q    +W+ +NSWG    + G+  + R  NNACGI  +
Sbjct: 150 YYDENCSSDALNHAVLAVGYGIQAGNKHWIIKNSWGESWGNAGYILMARNKNNACGIANL 209
Query: 179 AGY 181
           A +
Sbjct: 210 ASF 212

>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310

Iteration: 1
 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 17/191 (8%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
           +EGQY       + FS+ QLV+C++   G  GC G  +E   +Y  Q GLE+E  YPY  
Sbjct: 125 MEGQYMKNERTSISFSEQQLVDCSRPW-GNNGCGGGLMENAYQYLKQFGLETESSYPYTA 183
Query: 60  GNGEKFKCAYDK----SKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHFYN 114
             G+   C Y+K    +KV  F    +   +GSE  +K ++   GP +V ++        
Sbjct: 184 VEGQ---CRYNKQLGVAKVTGF----YTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMY 236
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NAC 173
            + I ++ + CSP  + HAVL VGYG Q    YW+ +NSWG    + G+ ++ R   N C
Sbjct: 237 RSGIYQS-QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMC 295
Query: 174 GIETIAGYATI 184
           GI ++A    +
Sbjct: 296 GIASLASLPMV 306

>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217

Iteration: 1
 Score = 94.0 bits (232), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 34  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
                  KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 94  ---AMDLKCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 209 ASFPSYPEI 217

>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329

Iteration: 1
 Score = 93.6 bits (231), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 13/189 (6%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
           +EGQ A++ G+L   S+  L++C+    G  GCDG  ++    Y H  G+ SE  YPY  
Sbjct: 148 VEGQLALQRGRLTSLSEQNLIDCSSSY-GNAGCDGGWMDSAFSYIHDYGIMSESAYPYE- 205
Query: 60  GNGEKFKCAYDKSK-VKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTP 117
              +   C +D S+ V   +G   L      ++   + + GP++V ++    + FY+G  
Sbjct: 206 --AQGDYCRFDSSQSVTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGL 263
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGI 175
               D+ C+ + + H VL+VGYG  +   YW+ +NSWG    + G+++  R  GNN CGI
Sbjct: 264 FY--DQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNN-CGI 320
Query: 176 ETIAGYATI 184
            T A Y  +
Sbjct: 321 ATAASYPAL 329

>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215

Iteration: 1
 Score = 93.2 bits (230), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 6/185 (3%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG--CDGLEQPIEYTHQAGLESEKDYPYRN 59
           +EGQ+ +    LV  S+  LV C     GCGG   D     I  ++   + +E  YPY +
Sbjct: 34  IEGQWQVAGNPLVSLSEQMLVSCDTIDFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVS 93
Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
           GNGE+ +C  +  ++              + +   L + GPL++ ++      YNG  + 
Sbjct: 94  GNGEQPQCQMNGHEIGAAITDHVDLPQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILT 153
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIA 179
                C+   + H VLLVGY    + PYW+ +NSW  +  ++G+ +IE+G N C +    
Sbjct: 154 S----CTSEQLDHGVLLVGYNDASNPPYWIIKNSWSNMWGEDGYIRIEKGTNQCLMNQAV 209
Query: 180 GYATI 184
             A +
Sbjct: 210 SSAVV 214

>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 132 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 191
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 192 AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 247
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 248 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 306
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 307 ASFPSYPEI 315

>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246

Iteration: 1
 Score = 92.8 bits (229), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 17/196 (8%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYT-HQAGLESEKDYPYRN 59
           +E  +AI TG LV  S+ +L++C  +  GC   +G   Q  E+     G+ SE DYPY+ 
Sbjct: 35  IEAAHAIATGNLVSLSEQELIDCVDESEGC--YNGWHYQSFEWVVKHGGIASEADYPYKA 92
Query: 60  GNGE------KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFY 113
            +G+      + K   D   V++ + +       S     +L +  P+SV ++    HFY
Sbjct: 93  RDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQ--PISVSIDAKDFHFY 150
Query: 114 NGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GN- 170
           +G  I       SP  I H VL+VGYG +D + YW+A+NSWG     +G+ +I+R  GN 
Sbjct: 151 SGG-IYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNL 209
Query: 171 -NACGIETIAGYATID 185
              CG+   A Y  I+
Sbjct: 210 LGVCGMNYFASYPIIE 225

>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 35  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 95  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 150
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 151 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 210 ASFPSYPEI 218

>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 34  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 94  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 209 ASFPSYPEI 217

>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 35  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 95  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 150
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 151 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 210 ASFPSYPEI 218

>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 36  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 95
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 96  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 151
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 152 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 210
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 211 ASFPSYPEI 219

>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 37  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 96
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 97  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 152
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 153 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 211
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 212 ASFPSYPEI 220

>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 34  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 94  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 209 ASFPSYPEI 217

>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 34  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 94  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 209 ASFPSYPEI 217

>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 35  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 95  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 150
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 151 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 209
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 210 ASFPSYPEI 218

>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/189 (33%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 34  LEAQLKLKTGKLVTLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T   +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 94  AMDQ---KCQYD-SKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 209 ASFPSYPEI 217

>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQ-AGLESEKDYPYR 58
           LEGQ   KTGKLV  S+  LV+C++   G  GC+G  + +  +Y  +  GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGKLVSLSEQNLVDCSRP-QGNQGCNGGFMARAFQYVKENGGLDSEESYPYV 92
Query: 59  NGNGEKFKCAYD-KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-GHL-IHFYNG 115
                   C Y  ++ V   TG   +     + + K +   GP+SV ++ GH    FY  
Sbjct: 93  ---AVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKS 149
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG-N 170
               + D  CS   + H VL+VGYG      D+  YWL +NSWGP     G+ KI +  N
Sbjct: 150 GIYFEPD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
Query: 171 NACGIETIAGYATI 184
           N CGI T A Y  +
Sbjct: 208 NHCGIATAASYPNV 221

>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 34  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD SK +  T + +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 94  AMDQ---KCQYD-SKYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    ++G+ ++ R   N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 209 ASFPSYPEI 217

>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 70/194 (36%), Positives = 98/194 (50%), Gaps = 17/194 (8%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQ-AGLESEKDYPYR 58
           LEGQ   KTGKLV  S+  LV+C++   G  GC+G  + +  +Y  +  GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGKLVSLSEQNLVDCSRP-QGNQGCNGGFMARAFQYVKENGGLDSEESYPYV 92
Query: 59  NGNGEKFKCAYD-KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN-GHL-IHFYNG 115
                   C Y  ++ V   TG   +     + + K +   GP+SV ++ GH    FY  
Sbjct: 93  ---AVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKS 149
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG-N 170
               + D  CS   + H VL+VGYG      D+  YWL +NSWGP     G+ KI +  N
Sbjct: 150 GIYFEPD--CSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKN 207
Query: 171 NACGIETIAGYATI 184
           N CGI T A Y  +
Sbjct: 208 NHCGIATAASYPNV 221

>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217

Iteration: 1
 Score = 89.7 bits (221), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 11/189 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 34  LEAQLKLKTGKLVSLSAQNLVDCSTKKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDF--LYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
             +    KC YD S  +  T + +  L +   + +K+ +   GP+SVG++     F+   
Sbjct: 94  AMDQ---KCQYD-SAYRAATCRKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYR 149
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN-NACGI 175
                +  C+ N + H VL+VGYG  +   YWL +NSWG    ++G+ ++ R   N CGI
Sbjct: 150 SGVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGI 208
Query: 176 ETIAGYATI 184
            +   Y  I
Sbjct: 209 ASFPSYPEI 217

>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 89/195 (45%), Gaps = 24/195 (12%)
Query: 2   LEGQYAIKTGKLVE--FSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYR 58
           +E Q  I  G   +   S+ QLV+C     GC G   +     Y  Q  G++SE  YPY 
Sbjct: 149 IESQMKIANGAGYDSSVSEQQLVDCVPNALGCSG-GWMNDAFTYVAQNGGIDSEGAYPYE 207
Query: 59  NGNGEKFKCAYDKSKVKL-FTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIH------ 111
             +G    C YD ++V    +G  +L       +  ++   GP++V  +           
Sbjct: 208 MADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGG 264
Query: 112 -FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER-G 169
            +YN T        C  N   HAVL+VGYG ++   YWL +NSWG     +G+FKI R  
Sbjct: 265 VYYNPT--------CETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNA 316
Query: 170 NNACGIETIAGYATI 184
           NN CGI  +A   T+
Sbjct: 317 NNHCGIAGVASVPTL 331

>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220

Iteration: 1
 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 93  ---ATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + DD  YWL +NSWG      G+ K+ +  
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDDNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220

>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 93  ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +  
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220

>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 93  ---ATEESCKYNP-KYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +  
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220

>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 35  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 94  ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 149
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +  
Sbjct: 150 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 206
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 207 RNHCGIASAASYPTV 221

>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 93  ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +  
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220

>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 35  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 93
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 94  ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 149
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +  
Sbjct: 150 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 206
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 207 RNHCGIASAASYPTV 221

>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 130 LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 188
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 189 ---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 244
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +  
Sbjct: 245 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 301
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 302 RNHCGIASAASYPTV 316

>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220

Iteration: 1
 Score = 79.0 bits (193), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 93  ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +  
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 205
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 206 RNHCGIASAASYPTV 220

>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 97/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 72  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 130
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 131 ---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 186
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +  
Sbjct: 187 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 243
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 244 RNHCGIASAASYPTV 258

>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 84/187 (44%), Gaps = 10/187 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYR 58
           +E Q+ +    L   S+  LV C K  SGC G   +    E+  Q     + +E  YPY 
Sbjct: 34  VECQWFLAGHPLTNLSEQMLVSCDKTDSGCSG-GLMNNAFEWIVQENNGAVYTEDSYPYA 92
Query: 59  NGNGEKFKCAYDKSKV-KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
           +G G    C      V    TG   L  + ++ +   L   GP++V ++      Y G  
Sbjct: 93  SGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGV 151
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           +      C   A+ H VLLVGY     +PYW+ +NSW     +EG+ +I +G+N C ++ 
Sbjct: 152 MTS----CVSEALDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
Query: 178 IAGYATI 184
            A  A +
Sbjct: 208 EASSAVV 214

>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 31/196 (15%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGG---CDGLEQPIEYTHQAGLESEKDYP 56
           +EG   I TG L+  S+ +LV+C +     GC G    DG +  I   +  G+ +E +YP
Sbjct: 34  VEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFII---NNGGINTEANYP 90
Query: 57  YRNGNGEKFKCAYDKSK---VKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG---HLI 110
           Y     E+ +C  D  +   V + T ++  Y N  E   +    Y P+SV L     +  
Sbjct: 91  Y---TAEEGQCNLDLQQEKYVSIDTYENVPYNN--EWALQTAVAYQPVSVALEAAGYNFQ 145
Query: 111 HFYNGTPIKKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
           H+ +G           P   A+ HAV +VGYG +  I YW+ +NSWG    +EG+ +I+R
Sbjct: 146 HYSSGI-------FTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQR 198
Query: 169 ---GNNACGIETIAGY 181
              G   CGI   A Y
Sbjct: 199 NVGGVGQCGIAKKASY 214

>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312

Iteration: 1
 Score = 77.8 bits (190), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 63/195 (32%), Positives = 96/195 (49%), Gaps = 20/195 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 126 LEGQMFRKTGRLISLSEQNLVDCSGP-EGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 184
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 185 ---ATEESCKYN-PKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 240
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
           G   + +   CS   + H VL+VGYG    + D   YWL +NSWG      G+ K+ +  
Sbjct: 241 GIYFEPD---CSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDR 297
Query: 170 NNACGIETIAGYATI 184
            N CGI + A Y T+
Sbjct: 298 RNHCGIASAASYPTV 312

>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 62/196 (31%), Positives = 93/196 (47%), Gaps = 31/196 (15%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGG---CDGLEQPIEYTHQAGLESEKDYP 56
           +EG   I TG L+  S+ +LV+C +     GC G    DG +  I   +  G+ +E +YP
Sbjct: 34  VEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFII---NNGGINTEANYP 90
Query: 57  YRNGNGEKFKCAYDKSK---VKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG---HLI 110
           Y     E+ +C  D  +   V + T ++  Y N  E   +    Y P+SV L     +  
Sbjct: 91  Y---TAEEGQCNLDLQQEKYVSIDTYENVPYNN--EWALQTAVAYQPVSVALEAAGYNFQ 145
Query: 111 HFYNGTPIKKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
           H+ +G           P   A+ HAV +VGYG +  I YW+ +NSWG    +EG+ +I+R
Sbjct: 146 HYSSGI-------FTGPCGTAVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQR 198
Query: 169 ---GNNACGIETIAGY 181
              G   CGI   A Y
Sbjct: 199 NVGGVGQCGIAKKASY 214

>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220

Iteration: 1
 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/191 (28%), Positives = 91/191 (47%), Gaps = 19/191 (9%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGG---CDGLEQPIEYTHQAGLESEKDY 55
            +EG   I +G L+  S+ +L++C +     GC G    DG +  I   +  G+ +E++Y
Sbjct: 33  TVEGINKITSGSLISLSEQELIDCGRTQNTRGCDGGYITDGFQFII---NDGGINTEENY 89
Query: 56  PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNG 115
           PY   +G+      D+  V + T ++  Y N  E   +    Y P+SV L+     F   
Sbjct: 90  PYTAQDGDCDVALQDQKYVTIDTYENVPYNN--EWALQTAVTYQPVSVALDAAGDAFKQ- 146
Query: 116 TPIKKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER---GN 170
                +     P   A+ HA+++VGYG +  + YW+ +NSW     +EG+ +I R   G 
Sbjct: 147 ---YASGIFTGPCGTAVDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGA 203
Query: 171 NACGIETIAGY 181
             CGI T+  Y
Sbjct: 204 GTCGIATMPSY 214

>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218

Iteration: 1
 Score = 76.6 bits (187), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 23/193 (11%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGG---CDGLEQPIEYTHQAGLESEKDY 55
            +EG   I TG L+  S+ +L++C +     GC G    DG +  I   +  G+ +E++Y
Sbjct: 33  TVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFII---NNGGINTEENY 89
Query: 56  PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNG 115
           PY   +GE      ++  V + T ++  Y N  E   +    Y P+SV L+        G
Sbjct: 90  PYTAQDGECNVDLQNEKYVTIDTYENVPYNN--EWALQTAVTYQPVSVALDAA------G 141
Query: 116 TPIKKNDE--ICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--- 168
              K+        P   AI HAV +VGYG +  I YW+ +NSW     +EG+ +I R   
Sbjct: 142 DAFKQYSSGIFTGPCGTAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVG 201
Query: 169 GNNACGIETIAGY 181
           G   CGI T+  Y
Sbjct: 202 GAGTCGIATMPSY 214

>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 10/187 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYR 58
           +E Q+ +    L   S+  LV C K  SGC G   +    E+  Q     + +E  YPY 
Sbjct: 34  VECQWFLAGHPLTNLSEQMLVSCDKTDSGCSG-GLMNNAFEWIVQENNGAVYTEDSYPYA 92
Query: 59  NGNGEKFKCAYDKSKV-KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
           +G G    C      V    TG   L  + ++ +   L   GP++V ++      Y G  
Sbjct: 93  SGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGV 151
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           +      C    + H VLLVGY     +PYW+ +NSW     +EG+ +I +G+N C ++ 
Sbjct: 152 MTS----CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
Query: 178 IAGYATI 184
            A  A +
Sbjct: 208 EASSAVV 214

>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 10/187 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYR 58
           +E Q+ +    L   ++  LV C K  SGC G   +    E+  Q     + +E  YPY 
Sbjct: 34  VECQWFLAGHPLTNLAEQMLVSCDKTDSGCSG-GLMNNAFEWIVQENNGAVYTEDSYPYA 92
Query: 59  NGNGEKFKCAYDKSKV-KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
           +G G    C      V    TG   L  + ++ +   L   GP++V ++      Y G  
Sbjct: 93  SGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGV 151
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           +      C    + H VLLVGY     +PYW+ +NSW     +EG+ +I +G+N C ++ 
Sbjct: 152 MTS----CVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
Query: 178 IAGYATI 184
            A  A +
Sbjct: 208 EASSAVV 214

>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 83/187 (44%), Gaps = 10/187 (5%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ---AGLESEKDYPYR 58
           +E Q+ +    L   ++  LV C K  SGC G   +    E+  Q     + +E  YPY 
Sbjct: 34  VECQWFLAGHPLTNLAEQMLVSCDKTDSGCSG-GLMNNAFEWIVQENNGAVYTEDSYPYA 92
Query: 59  NGNGEKFKCAYDKSKV-KLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
           +G G    C      V    TG   L  + ++ +   L   GP++V ++      Y G  
Sbjct: 93  SGEGISPPCTTSGHTVGATITGHVELPQDEAQ-IAAWLAVNGPVAVAVDASSWMTYTGGV 151
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           +      C    + H VLLVGY     +PYW+ +NSW     +EG+ +I +G+N C ++ 
Sbjct: 152 MTS----CVSEQLDHGVLLVGYNDGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKE 207
Query: 178 IAGYATI 184
            A  A +
Sbjct: 208 EASSAVV 214

>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438

Iteration: 1
 Score = 73.2 bits (178), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/197 (28%), Positives = 90/197 (45%), Gaps = 20/197 (10%)
Query: 1   MLEGQYAIKT--GKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
           MLE +  I T   +    S  ++V C+    GC G        +Y    G+  E  +PY 
Sbjct: 241 MLEARIRILTNNSQTPILSPQEVVSCSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYT 300
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFN-----GSETMKKILYKYGPLSVGLNGH--LIH 111
             +     C   ++ ++ ++ + +             MK  L K+GP++V    H   +H
Sbjct: 301 ATDA---PCKPKENCLRYYSSEYYYVGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLH 357
Query: 112 FYNGTPIKKNDEICSP----NAIGHAVLLVGYGKQ--DDIPYWLARNSWGPIGPDEGFFK 165
           +++G  I  +  +  P        HAVLLVGYGK     + YW+ +NSWG    + G+F+
Sbjct: 358 YHSG--IYHHTGLSDPFNPFELTNHAVLLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFR 415
Query: 166 IERGNNACGIETIAGYA 182
           I RG + C IE+IA  A
Sbjct: 416 IRRGTDECAIESIAMAA 432

>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/192 (30%), Positives = 90/192 (46%), Gaps = 19/192 (9%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYT-HQAGLESEKDYPYR 58
           +EG  AI+TG LV  S+ +L++C    +   GC G  ++   EY  +  GL +E  YPYR
Sbjct: 37  VEGINAIRTGSLVSLSEQELIDC--DTADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYR 94
Query: 59  NGNG--EKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL--NGHLIHFYN 114
              G     + A +   V    G   +  N  E + + +    P+SV +  +G    FY+
Sbjct: 95  AARGTCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQ-PVSVAVEASGKAFMFYS 153
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG-KQDDIPYWLARNSWGPIGPDEGFFKIERGNNA- 172
                     C    + H V +VGYG  +D   YW  +NSWGP   ++G+ ++E+ + A 
Sbjct: 154 EGVFTGE---CG-TELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGAS 209
Query: 173 ---CGIETIAGY 181
              CGI   A Y
Sbjct: 210 GGLCGIAMEASY 221

>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217

Iteration: 1
 Score = 71.2 bits (173), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 17/192 (8%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 93  ---ATEESCKYNP-KYSVANDVGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG-KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNA 172
           G     +    S N   HA+L+VGYG   ++  YWL +NSWG      G+ K+ +   N 
Sbjct: 149 GIYFSSDCSSSSLN---HAMLVVGYGFISNNQKYWLVKNSWGEEWGMGGYVKMAKDRRNH 205
Query: 173 CGIETIAGYATI 184
           CGI + A Y T+
Sbjct: 206 CGIASAASYPTV 217

>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441

Iteration: 1
 Score = 70.5 bits (171), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/199 (29%), Positives = 89/199 (44%), Gaps = 22/199 (11%)
Query: 1   MLEGQYAIKT--GKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
           MLE +  I T   +    S  ++V C++   GC G        +Y    GL  E  +PY 
Sbjct: 242 MLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPY- 300
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNG------SETMKKILYKYGPLSVGLNGH--LI 110
              G    C   +   + ++  ++ Y  G         MK  L  +GP++V    +   +
Sbjct: 301 --TGTDSPCKMKEDCFRYYS-SEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFL 357
Query: 111 HF----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFF 164
           H+    Y+ T ++  D         HAVLLVGYG      + YW+ +NSWG    + G+F
Sbjct: 358 HYKKGIYHHTGLR--DPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYF 415
Query: 165 KIERGNNACGIETIAGYAT 183
           +I RG + C IE+IA  AT
Sbjct: 416 RIRRGTDECAIESIAVAAT 434

>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/188 (28%), Positives = 84/188 (44%), Gaps = 17/188 (9%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIE--YTHQAGLESEKDYPYRN 59
           +EG   I TG L+  S+ QLV+C     GC G  G   P      +  G+ SE+ YPYR 
Sbjct: 36  VEGINQIVTGDLISLSEQQLVDCTTANHGCRG--GWMNPAFQFIVNNGGINSEETYPYRG 93
Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNGTP 117
            +G       +   V + + ++    N     K +  +  P+SV ++  G     Y    
Sbjct: 94  QDG-ICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQ--PVSVTMDAAGRDFQLYRSGI 150
Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG----NNAC 173
              +  I    +  HA+ +VGYG ++D  +W+ +NSWG    + G+ + ER     +  C
Sbjct: 151 FTGSCNI----SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKC 206
Query: 174 GIETIAGY 181
           GI   A Y
Sbjct: 207 GITRFASY 214

>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 79/178 (44%), Gaps = 11/178 (6%)
Query: 3   EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNG 62
           E  Y       ++ S+ +LV+CA Q  GC G D + + IEY  Q G+  E+ YPY     
Sbjct: 45  ESAYLAYRNTSLDLSEQELVDCASQ-HGCHG-DTIPRGIEYIQQNGVVEERSYPYV---A 99
Query: 63  EKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG----HLIHFYNGTPI 118
            + +C    S+    +    +Y    + +++ L +       + G         Y+G  I
Sbjct: 100 REQRCRRPNSQHYGISNYCQIYPPDVKQIREALTQTHTAIAVIIGIKDLRAFQHYDGRTI 159
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIE 176
            ++D    PN   HAV +VGYG      YW+ RNSW     D G+   + GNN   IE
Sbjct: 160 IQHDNGYQPNY--HAVNIVGYGSTQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIE 215

>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222

Iteration: 1
 Score = 67.4 bits (163), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 15/191 (7%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EG  AI TG+L+  S+ Q+V+C        G D  +         G+ S+ +YPY   +
Sbjct: 34  IEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITNGGIASDANYPYTGVD 93
Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHF--YNGTPIK 119
           G    C  +K       G   +  + S  +  +  +  P+SV +      F  Y G  I 
Sbjct: 94  G---TCDLNKPIAARIDGYTNVPNSSSALLDAVAKQ--PVSVNIYTSSTSFQLYTGPGIF 148
Query: 120 KNDEICS--PNAIGHAVLLVGYGKQ-DDIPYWLARNSWGPIGPDEGFFKIERGNN----A 172
                CS  P  + H VL+VGYG    +  YW+ +NSWG     +G+  I R  N     
Sbjct: 149 AGSS-CSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGV 207
Query: 173 CGIETIAGYAT 183
           C I+    Y T
Sbjct: 208 CAIDAWGSYPT 218

>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 50/185 (27%), Positives = 82/185 (44%), Gaps = 20/185 (10%)
Query: 8   IKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT-HQAGLESEKDYPYRNGNGEKFK 66
           I+TG+L+  S+ +LV+C     GC G   +    +Y     G++++++YPY    G    
Sbjct: 40  IRTGQLISLSEQELVDCDTASHGCNG-GWMNNAFQYIITNGGIDTQQNYPYSAVQGS--- 95
Query: 67  CAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDE--I 124
           C   + +V    G   +  N    ++  +    P+SV +         G P +       
Sbjct: 96  CKPYRLRVVSINGFQRVTRNNESALQSAVASQ-PVSVTVEAA------GAPFQHYSSGIF 148
Query: 125 CSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIETI 178
             P   A  H V++VGYG Q    YW+ RNSWG    ++G+  +ER   +    CGI  +
Sbjct: 149 TGPCGTAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQL 208
Query: 179 AGYAT 183
             Y T
Sbjct: 209 PSYPT 213

>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214

Iteration: 1
 Score = 66.6 bits (161), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/186 (31%), Positives = 94/186 (50%), Gaps = 23/186 (12%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE-QPIEYTHQAGLESEKDYPYRN 59
            +EG   I TG+L+  S+ +L++C ++  GC G  G +   ++Y    G+ +E++YPY  
Sbjct: 33  TIEGINKIITGQLISLSEQELLDCERRSHGCDG--GYQTTSLQYVVDNGVHTEREYPYEK 90
Query: 60  GNGEKFKC-AYDKSKVKLF-TGKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNG 115
             G   +C A DK   K++ TG  ++  N   ++ + +    P+SV  +  G    FY G
Sbjct: 91  KQG---RCRAKDKKGPKVYITGYKYVPANDEISLIQAIANQ-PVSVVTDSRGRGFQFYKG 146
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----N 171
                 +  C  N   HAV  VGYGK     Y L +NSWGP   ++G+ +I+R +     
Sbjct: 147 GIY---EGPCGTNT-DHAVTAVGYGKT----YLLLKNSWGPNWGEKGYIRIKRASGRSKG 198
Query: 172 ACGIET 177
            CG+ T
Sbjct: 199 TCGVYT 204

>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229

Iteration: 1
 Score = 66.6 bits (161), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 88/191 (46%), Gaps = 20/191 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVEC-AKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRN 59
           +EG   IKT KLV  S+ +LV+C   Q  GC G   ++   E+  Q  G+ +E +YPY  
Sbjct: 35  VEGINQIKTNKLVSLSEQELVDCDTDQNQGCNG-GLMDYAFEFIKQRGGITTEANYPYEA 93
Query: 60  GNGEKFKCAYDKSKVKLFT--GKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNG 115
            +G    C   K      +  G + +  N    + K +    P+SV ++  G    FY+ 
Sbjct: 94  YDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVANQ-PVSVAIDAGGSDFQFYSE 149
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYGKQ-DDIPYWLARNSWGPIGPDEGFFKIERG----N 170
                +   C    + H V +VGYG   D   YW  +NSWGP   ++G+ ++ERG     
Sbjct: 150 GVFTGS---CG-TELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKE 205
Query: 171 NACGIETIAGY 181
             CGI   A Y
Sbjct: 206 GLCGIAMEASY 216

>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 17/187 (9%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +E    I+TG L+  S+ QLV+C K+  GC G   +          G+++E +YPY+  
Sbjct: 33  TVESINQIRTGNLISLSEQQLVDCNKKNHGCKGGAFVYAYQYIIDNGGIDTEANYPYKAV 92
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
            G    C   K  V++   K   + N +   K +  +   +++  +      Y      K
Sbjct: 93  QGP---CRAAKKVVRIDGYKGVPHCNENALKKAVASQPSVVAIDASSKQFQHY------K 143
Query: 121 NDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGIE 176
           +     P    + H V++VGY K     YW+ RNSWG    ++G+ +++R  G   CGI 
Sbjct: 144 SGIFSGPCGTKLNHGVVIVGYWKD----YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIA 199
Query: 177 TIAGYAT 183
            +  Y T
Sbjct: 200 RLPYYPT 206

>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 15/186 (8%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY-THQAGLESEKDYPYRN 59
            +E    I+TG L+  S+ QLV+C+K+  GC G    ++  +Y     G+++E +YPY+ 
Sbjct: 33  TVESINQIRTGNLISLSEQQLVDCSKKNHGCKG-GYFDRAYQYIIANGGIDTEANYPYKA 91
Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIK 119
             G    C   K  V++   K     N +     +  +   +++  +      Y G    
Sbjct: 92  FQGP---CRAAKKVVRIDGCKGVPQCNENALKNAVASQPSVVAIDASSKQFQHYKGGIFT 148
Query: 120 KNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGIET 177
                     + H V++VGYGK     YW+ RNSWG    ++G+ +++R  G   CGI  
Sbjct: 149 GP----CGTKLNHGVVIVGYGKD----YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIAR 200
Query: 178 IAGYAT 183
           +  Y T
Sbjct: 201 LPFYPT 206

>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218

Iteration: 1
 Score = 64.3 bits (155), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 60/184 (32%), Positives = 89/184 (48%), Gaps = 19/184 (10%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQ-PIEYTHQAGLESEKDYPYRN 59
            +EG   I TG L+E S+ +LV+C K   GC G  G +   ++Y    G+ + K YPY+ 
Sbjct: 33  TVEGINKIVTGNLLELSEQELVDCDKHSYGCKG--GYQTTSLQYVANNGVHTSKVYPYQ- 89
Query: 60  GNGEKFKC-AYDKSKVKL-FTGKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNG 115
              +++KC A DK   K+  TG   +  N   +    L    PLSV +   G     Y  
Sbjct: 90  --AKQYKCRATDKPGPKVKITGYKRVPSNXETSFLGALANQ-PLSVLVEAGGKPFQLYKS 146
Query: 116 TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN-- 171
                 D  C    + HAV  VGYG  D   Y + +NSWGP   ++G+ +++R  GN+  
Sbjct: 147 GVF---DGPCG-TKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQG 202
Query: 172 ACGI 175
            CG+
Sbjct: 203 TCGV 206

>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           GHA+ ++G+G ++ +PYWL  NSW     D GFFKI RG N CGIE+
Sbjct: 204 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 250

>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           GHA+ ++G+G ++ +PYWL  NSW     D GFFKI RG N CGIE+
Sbjct: 260 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 306

>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254

Iteration: 1
 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           GHA+ ++G+G ++ +PYWL  NSW     D GFFKI RG N CGIE+
Sbjct: 198 GHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKILRGENHCGIES 244

>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 50/161 (31%), Positives = 75/161 (46%), Gaps = 15/161 (9%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTH---QAGLESEKDYPYR 58
           LEG +  KTGKLV  S+ +L++C++   G   C G E    + +     G+ SE  YPY 
Sbjct: 40  LEGAHCAKTGKLVSLSEQELMDCSRA-EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL 98
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLI--HFYNGT 116
               E+ +    +  VK+   KD      SE   K      P+S+ +    +   FY+  
Sbjct: 99  -ARDEECRAQSCEKVVKILGFKDVP--RRSEAAMKAALAKSPVSIAIEADQMPFQFYHEG 155
Query: 117 PIKKNDEICSPNAIGHAVLLVGYG--KQDDIPYWLARNSWG 155
                D  C  + + H VLLVGYG  K+    +W+ +NSWG
Sbjct: 156 VF---DASCGTD-LDHGVLLVGYGTDKESKKDFWIMKNSWG 192

>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 2/92 (2%)
Query: 86  NGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDI 145
           N  + ++K + KYGP+  G   +       + I K+  I      GHA+ ++G+G ++  
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKH--ITGETLGGHAIRIIGWGVENKA 214
Query: 146 PYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           PYWL  NSW     + G+F+I RG + C IE+
Sbjct: 215 PYWLIANSWNEDWGENGYFRIVRGRDECSIES 246

>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
           GHA+ ++G+G ++  PYWL  NSW     D GFFKI RG + CGIE+  +AG    D
Sbjct: 261 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 317

>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
           GHA+ ++G+G ++  PYWL  NSW     D GFFKI RG + CGIE+  +AG    D
Sbjct: 199 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 255

>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
           GHA+ ++G+G ++  PYWL  NSW     D GFFKI RG + CGIE+  +AG    D
Sbjct: 200 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 256

>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
           GHA+ ++G+G ++  PYWL  NSW     D GFFKI RG + CGIE+  +AG    D
Sbjct: 198 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 254

>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
           GHA+ ++G+G ++  PYWL  NSW     D GFFKI RG + CGIE+  +AG    D
Sbjct: 204 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 260

>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 56  PYRNGNGEKFKCA------YDKS--KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGL 105
           P   G G+  KC+      Y  S  + K F    +   N  + +   +YK GP+  +  +
Sbjct: 117 PPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV 176
Query: 106 NGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFK 165
               + + +G     + EI      GHA+ ++G+G ++  PYWL  NSW     D GFFK
Sbjct: 177 YSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFK 232
Query: 166 IERGNNACGIET 177
           I RG + CGIE+
Sbjct: 233 ILRGQDHCGIES 244

>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 27/57 (47%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 131 GHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET--IAGYATID 185
           GHA+ ++G+G ++  PYWL  NSW     D GFFKI RG + CGIE+  +AG    D
Sbjct: 149 GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRTD 205

>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 14  VEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RN 59
           V  S   L+ C   CS CG GC+G   ++   Y    GL S+   PY           +N
Sbjct: 122 VHISAGDLLAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKN 178
Query: 60  G-------NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNGH 108
           G       N +  KC Y  D   + +   + +  +   G +   + L+  GP  V  + +
Sbjct: 179 GYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 238
Query: 109 --LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
              I + +G     + +       GHAV LVG+G  + +PYW   NSW      +G+F I
Sbjct: 239 EDFIAYNSGVYHHVSGQYLG----GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 294
Query: 167 ERGNNACGIE 176
            RG++ CGIE
Sbjct: 295 RRGSSECGIE 304

>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 14  VEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RN 59
           V  S   L+ C   CS CG GC+G   ++   Y    GL S+   PY           +N
Sbjct: 144 VHISAGDLLAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKN 200
Query: 60  G-------NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNGH 108
           G       N +  KC Y  D   + +   + +  +   G +   + L+  GP  V  + +
Sbjct: 201 GYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 260
Query: 109 --LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
              I + +G     + +       GHAV LVG+G  + +PYW   NSW      +G+F I
Sbjct: 261 EDFIAYNSGVYHHVSGQYLG----GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 316
Query: 167 ERGNNACGIE 176
            RG++ CGIE
Sbjct: 317 RRGSSECGIE 326

>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 82/190 (43%), Gaps = 34/190 (17%)
Query: 14  VEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYPY-----------RN 59
           V  S   L+ C   CS CG GC+G   ++   Y    GL S+   PY           +N
Sbjct: 121 VHISAGDLLAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKN 177
Query: 60  G-------NGEKFKCAY--DKSKVKLFTGKDFLYF--NGSETMKKILYKYGPLSVGLNGH 108
           G       N +  KC Y  D   + +   + +  +   G +   + L+  GP  V  + +
Sbjct: 178 GYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYALQGEDDYMRELFFRGPFEVAFDVY 237
Query: 109 --LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
              I + +G     + +       GHAV LVG+G  + +PYW   NSW      +G+F I
Sbjct: 238 EDFIAYNSGVYHHVSGQYLG----GHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLI 293
Query: 167 ERGNNACGIE 176
            RG++ CGIE
Sbjct: 294 RRGSSECGIE 303

>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 56/193 (29%), Positives = 87/193 (45%), Gaps = 23/193 (11%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +E QYAI+   L  FS+ +LV+C+ + +GC G        +     GL S+ DYPY +  
Sbjct: 53  VESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDMIDLGGLCSQDDYPYVSNL 112
Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGH-LIHFYNGTPIKK 120
            E   C   +   + +T K ++     +  K+ L   GP+S+ +       FY G     
Sbjct: 113 PE--TCNLKRCNER-YTIKSYVSI-PDDKFKEALRYLGPISISIAASDDFAFYRGG-FYD 167
Query: 121 NDEICSPNAIGHAVLLVGYGKQD----------DIPYWLARNSWGPIGPDEGFFKIERGN 170
            +   +PN   HAV+LVGYG +D             Y++ +NSWG    + G+  +E   
Sbjct: 168 GECGAAPN---HAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDE 224
Query: 171 N----ACGIETIA 179
           N     C I T A
Sbjct: 225 NGYKKTCSIGTEA 237

>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256

Iteration: 1
 Score = 57.0 bits (136), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 14/132 (10%)
Query: 56  PYRNGNGEKFKCA------YDKS--KVKLFTGKDFLYFNGSETMKKILYKYGPL--SVGL 105
           P   G G+  KC+      Y  S  + K F    +   N  + +   +YK GP+  +  +
Sbjct: 117 PPCTGEGDTPKCSKTCEPGYSPSYKEDKHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSV 176
Query: 106 NGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFK 165
               + + +G     + EI      GHA+ ++G+G ++  PYWL  NSW     D GFFK
Sbjct: 177 YSDFLLYKSGVYQHVSGEIMG----GHAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFK 232
Query: 166 IERGNNACGIET 177
           I RG + CGIE+
Sbjct: 233 ILRGQDHCGIES 244

>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 79/180 (43%), Gaps = 17/180 (9%)
Query: 8   IKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKC 67
           I+TG L+  S+ +LV+C K+  GC G   +       +  G++++ +YPY+   G     
Sbjct: 40  IRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGP---- 95
Query: 68  AYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSP 127
               SKV    G + + F     +K+ +    P +V ++     F        +     P
Sbjct: 96  CQAASKVVSIDGYNGVPFCNEXALKQAV-AVQPSTVAIDASSAQFQQ----YSSGIFSGP 150
Query: 128 --NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGIETIAGYAT 183
               + H V +VGY       YW+ RNSWG    ++G+ ++ R  G   CGI  +  Y T
Sbjct: 151 CGTKLNHGVTIVGYQAN----YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPT 206

>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 6/105 (5%)
Query: 75  KLFTGKDFLYFNGSETMKKILYKYGPL--SVGLNGHLIHFYNGTPIKKNDEICSPNAIGH 132
           K F    +   N  + +   +YK GP+  +  +    + + +G     + EI      GH
Sbjct: 96  KHFGCSSYSVANNEKEIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQHVSGEIMG----GH 151
Query: 133 AVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIET 177
           A+ ++G+G ++  PYWL  NSW     D GFFKI RG + CGIE+
Sbjct: 152 AIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196

>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 132 HAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYAT 183
           HAVLLVGYG      + YW+ +NSWG    + G+F+I RG + C IE+IA  AT
Sbjct: 11  HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 64

>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYR 58
           +E QYAI+  KL+  S+ +LV+C+ +  GC G    +  E  IE     G+  + DYPY 
Sbjct: 50  VESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIEL---GGICPDGDYPYV 106
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGP--LSVGLNGHLIHFYNGT 116
           +       C  D+   K +  K++L    ++ +K+ L   GP  +SV ++     +  G 
Sbjct: 107 SDAPN--LCNIDRCTEK-YGIKNYLSVPDNK-LKEALRFLGPISISVAVSDDFAFYKEGI 162
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIP----------YWLARNSWGPIGPDEGFFKI 166
                D  C  + + HAV+LVG+G ++ +           Y++ +NSWG    + GF  I
Sbjct: 163 F----DGECG-DQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 217
Query: 167 ERGNNA----CGIETIAGYATID 185
           E   +     CG+ T A    I+
Sbjct: 218 ETDESGLMRKCGLGTDAFIPLIE 240

>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 57/203 (28%), Positives = 95/203 (46%), Gaps = 31/203 (15%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGG---CDGLEQPIEYTHQAGLESEKDYPYR 58
           +E QYAI+  KL+  S+ +LV+C+ +  GC G    +  E  IE     G+  + DYPY 
Sbjct: 51  VESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIEL---GGICPDGDYPYV 107
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGP--LSVGLNGHLIHFYNGT 116
           +       C  D+   K +  K++L    ++ +K+ L   GP  +SV ++     +  G 
Sbjct: 108 SDAPN--LCNIDRCTEK-YGIKNYLSVPDNK-LKEALRFLGPISISVAVSDDFAFYKEGI 163
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIP----------YWLARNSWGPIGPDEGFFKI 166
                D  C  + + HAV+LVG+G ++ +           Y++ +NSWG    + GF  I
Sbjct: 164 F----DGECG-DQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINI 218
Query: 167 ERGNNA----CGIETIAGYATID 185
           E   +     CG+ T A    I+
Sbjct: 219 ETDESGLMRKCGLGTDAFIPLIE 241

>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 93  ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG 140
           G   + +   CS   + H VL+VGYG
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYG 171

>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/146 (31%), Positives = 72/146 (49%), Gaps = 15/146 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTH-QAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGP-QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92
Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSE-TMKKILYKYGPLSVGLN-GH--LIHFYN 114
                +  C Y+  K  +     F+     E  + K +   GP+SV ++ GH   + +  
Sbjct: 93  ---ATEESCKYNP-KYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148
Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYG 140
           G   + +   CS   + H VL+VGYG
Sbjct: 149 GIYFEPD---CSSEDMDHGVLVVGYG 171

>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 19/160 (11%)
Query: 22  VECAKQCSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRNGNGE-----------KFKCA 68
           V+    C   G C+G       +Y HQ G+  E    Y+  + E           +FK  
Sbjct: 59  VQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKEC 118
Query: 69  YDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICS 126
           +      L+   D+   +G E M   +Y  GP+S G+     L ++  G   +  D    
Sbjct: 119 HAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQD---- 174
Query: 127 PNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
              I H V + G+G  D   YW+ RNSWG    + G+ +I
Sbjct: 175 TTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214

>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277

Iteration: 1
 Score = 53.5 bits (127), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 65/160 (40%), Gaps = 19/160 (11%)
Query: 22  VECAKQCSGCGGCDGLE--QPIEYTHQAGLESEKDYPYRNGNGE-----------KFKCA 68
           V+    C   G C+G       +Y HQ G+  E    Y+  + E           +FK  
Sbjct: 94  VQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKEC 153
Query: 69  YDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICS 126
           +      L+   D+   +G E M   +Y  GP+S G+     L ++  G   +  D    
Sbjct: 154 HAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQDTT-- 211
Query: 127 PNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI 166
              I H V + G+G  D   YW+ RNSWG    + G+ +I
Sbjct: 212 --YINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249

>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 3   EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY----- 57
           E  Y     + ++ ++ +LV+CA Q  GC G D + + IEY    G+  E  Y Y     
Sbjct: 44  ESAYLAYRQQSLDLAEQELVDCASQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQ 101
Query: 58  --RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL---NGHLIHF 112
             R  N ++F  +   +  +++        N ++  + +   +  ++V +   +      
Sbjct: 102 SCRRPNAQRFGIS---NYCQIYPP------NANKIREALAQTHSAIAVIIGIKDLDAFRH 152
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 163
           Y+G  I + D    PN   HAV +VGY     + YW+ RNSW     D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 3   EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY----- 57
           E  Y     + ++ ++ +LV+CA Q  GC G D + + IEY    G+  E  Y Y     
Sbjct: 124 ESAYLAYRDQSLDLAEQELVDCASQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQ 181
Query: 58  --RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL---NGHLIHF 112
             R  N ++F  +   +  +++        N ++  + +   +  ++V +   +      
Sbjct: 182 SCRRPNAQRFGIS---NYCQIYPP------NANKIREALAQTHSAIAVIIGIKDLDAFRH 232
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 163
           Y+G  I + D    PN   HAV +VGY     + YW+ RNSW     D G+
Sbjct: 233 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 281

>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 3   EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY----- 57
           E  Y     + ++ ++ +LV+CA Q  GC G D + + IEY    G+  E  Y Y     
Sbjct: 44  ESAYLAYRQQSLDLAEQELVDCASQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQ 101
Query: 58  --RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL---NGHLIHF 112
             R  N ++F  +   +  +++        N ++  + +   +  ++V +   +      
Sbjct: 102 SCRRPNAQRFGIS---NYCQIYPP------NANKIREALAQTHSAIAVIIGIKDLDAFRH 152
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 163
           Y+G  I + D    PN   HAV +VGY     + YW+ RNSW     D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 3   EGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY----- 57
           E  Y     + ++ ++ +LV+CA Q  GC G D + + IEY    G+  E  Y Y     
Sbjct: 44  ESAYLAYRNQSLDLAEQELVDCASQ-HGCHG-DTIPRGIEYIQHNGVVQESYYRYVAREQ 101
Query: 58  --RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL---NGHLIHF 112
             R  N ++F  +   +  +++        N ++  + +   +  ++V +   +      
Sbjct: 102 SCRRPNAQRFGIS---NYCQIYPP------NVNKIREALAQTHSAIAVIIGIKDLDAFRH 152
Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGF 163
           Y+G  I + D    PN   HAV +VGY     + YW+ RNSW     D G+
Sbjct: 153 YDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGY 201

>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TG L E+S+ +L++C ++  GC G       ++   Q G+     YPY   
Sbjct: 33  TIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSA-LQLVAQYGIHYRNTYPYE-- 89
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
            G +  C   + K       D +          +LY     P+SV L      F     +
Sbjct: 90  -GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
            +      P  N + HAV  VGYG      Y L +NSWG    + G+ +I+RG       
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
           CG+ T + Y
Sbjct: 200 CGLYTSSFY 208

>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TG L E+S+ +L++C ++  GC G       ++   Q G+     YPY   
Sbjct: 33  TIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSA-LQLVAQYGIHYRNTYPYE-- 89
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
            G +  C   + K       D +          +LY     P+SV L      F     +
Sbjct: 90  -GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
            +      P  N + HAV  VGYG      Y L +NSWG    + G+ +I+RG       
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
           CG+ T + Y
Sbjct: 200 CGLYTSSFY 208

>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/190 (28%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +E    I+TG L E+S+ +L++C ++  GC G       ++   Q G+     YPY    
Sbjct: 185 IESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPW-SALQLVAQYGIHYRNTYPYE--- 240
Query: 62  GEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLN--GHLIHFYNGTP 117
           G +  C   + K       D +          +LY     P+SV L   G     Y G  
Sbjct: 241 GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI 299
Query: 118 IKKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----N 171
                    P  N + HAV  VGYG      Y L RNSWG    + G+ +I+RG      
Sbjct: 300 F------VGPCGNKVDHAVAAVGYGPN----YILIRNSWGTGWGENGYIRIKRGTGNSYG 349
Query: 172 ACGIETIAGY 181
            CG+ T + Y
Sbjct: 350 VCGLYTSSFY 359

>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 80/187 (42%), Gaps = 9/187 (4%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TGKLVE S+ +LV+C ++  GC G       +EY  + G+     YPY+  
Sbjct: 33  TVEGINKIRTGKLVELSEQELVDCERRSHGCKG-GYPPYALEYVAKNGIHLRSKYPYKAK 91
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
            G           VK          N    +  I  +   + V   G     Y G     
Sbjct: 92  QGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF-- 149
Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN--ACGIE 176
            +  C    + HAV  VGYGK     Y L +NSWG    ++G+ +I+R  GN+   CG+ 
Sbjct: 150 -EGPCG-TKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLY 207
Query: 177 TIAGYAT 183
             + Y T
Sbjct: 208 KSSYYPT 214

>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TG L ++S+ +L++C ++  GC G       ++   Q G+     YPY   
Sbjct: 33  TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWS-ALQLVAQYGIHYRNTYPYE-- 89
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
            G +  C   + K       D +          +LY     P+SV L      F     +
Sbjct: 90  -GVQRYCR-SREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
            +      P  N + HAV  VGYG      Y L +NSWG    + G+ +I+RG       
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
           CG+ T + Y
Sbjct: 200 CGLYTSSFY 208

>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212

Iteration: 1
 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TG L ++S+ +L++C ++  GC G       ++   Q G+     YPY   
Sbjct: 33  TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWS-ALQLVAQYGIHYRNTYPYE-- 89
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
            G +  C   + K       D +          +LY     P+SV L      F     +
Sbjct: 90  -GVQRYCR-SREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
            +      P  N + HAV  VGYG      Y L +NSWG    + G+ +I+RG       
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
           CG+ T + Y
Sbjct: 200 CGLYTSSFY 208

>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TG L ++S+ +L++C ++  GC G       ++   Q G+     YPY   
Sbjct: 33  TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWS-ALQLVAQYGIHYRNTYPYE-- 89
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
            G +  C   + K       D +          +LY     P+SV L      F     +
Sbjct: 90  -GVQRYCR-SREKGPYAAKTDGVRQVQPYNQGALLYSIANQPVSVVLQAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
            +      P  N + HAV  VGYG      Y L +NSWG    + G+ +I+RG       
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
           CG+ T + Y
Sbjct: 200 CGLYTSSFY 208

>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 86/189 (45%), Gaps = 13/189 (6%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TGKLVE S+ +LV+C ++  GC G       +EY  + G+     YPY+  
Sbjct: 33  TVEGINKIRTGKLVELSEQELVDCERRSHGCKG-GYPPYALEYVAKNGIHLRSKYPYKAK 91
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGL--NGHLIHFYNGTPI 118
            G           VK  +G   +  N    +   + K  P+SV +   G     Y G   
Sbjct: 92  QGTCRAKQVGGPIVKT-SGVGRVQPNNEGNLLNAIAKQ-PVSVVVESKGRPFQLYKGGIF 149
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN--ACG 174
              +  C    + HAV  VGYGK     Y L +NSWG    ++G+ +I+R  GN+   CG
Sbjct: 150 ---EGPCG-TKVEHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCG 205
Query: 175 IETIAGYAT 183
           +   + Y T
Sbjct: 206 LYKSSYYPT 214

>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNA 172
           KK   +C  +   HAV +VGYG       +   YW+ RNSWGP   DEG+FK++  G   
Sbjct: 186 KKVQNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 245
Query: 173 CGIETIAGYATIDV 186
           C    I      +V
Sbjct: 246 CHFNFIHSVVIFNV 259

>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 36/74 (48%), Gaps = 6/74 (8%)
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQ-----DDIPYWLARNSWGPIGPDEGFFKIER-GNNA 172
           KK   +C  +   HAV +VGYG       +   YW+ RNSWGP   DEG+FK++  G   
Sbjct: 187 KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTH 246
Query: 173 CGIETIAGYATIDV 186
           C    I      +V
Sbjct: 247 CHFNFIHSVVIFNV 260

>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/189 (26%), Positives = 79/189 (41%), Gaps = 21/189 (11%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TG L ++S+ +L++C ++  GC G       ++   Q G+     YPY   
Sbjct: 33  TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSA-LQLVAQYGIHYRNTYPYE-- 89
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYG--PLSVGLNGHLIHFYNGTPI 118
            G +  C   + K       D +          +LY     P+SV L      F     +
Sbjct: 90  -GVQRYCR-SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDF----QL 143
Query: 119 KKNDEICSP--NAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NA 172
            +      P  N + HAV  VGYG      Y L +NSWG    + G+ +I+RG       
Sbjct: 144 YRGGIFVGPCGNKVDHAVAAVGYGPN----YILIKNSWGTGWGENGYIRIKRGTGNSYGV 199
Query: 173 CGIETIAGY 181
           CG+ T + Y
Sbjct: 200 CGLYTSSFY 208

>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/183 (30%), Positives = 79/183 (43%), Gaps = 17/183 (9%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQ-PIEYTHQAGLESEKDYPYRN 59
            +EG   IKTG LVE S+ +LV+C  Q  GC    G +   ++Y  Q G+     YPY  
Sbjct: 33  TVEGINKIKTGNLVELSEQELVDCDLQSYGCN--RGYQSTSLQYVAQNGIHLRAKYPYI- 89
Query: 60  GNGEKFKCAYDK---SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGT 116
              ++  C  ++    KVK          N    +  I ++   + V   G     Y G 
Sbjct: 90  --AKQQTCRANQVGGPKVKTNGVGRVQSNNEGSLLNAIAHQPVSVVVESAGRDFQNYKGG 147
Query: 117 PIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN--A 172
                 E      + HAV  VGYGK     Y L +NSWGP   + G+ +I R  GN+   
Sbjct: 148 IF----EGSCGTKVDHAVTAVGYGKSGGKGYILIKNSWGPGWGENGYIRIRRASGNSPGV 203
Query: 173 CGI 175
           CG+
Sbjct: 204 CGV 206

>pdb|1PCI|A Chain A, Procaricain Length = 322

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/187 (29%), Positives = 79/187 (42%), Gaps = 9/187 (4%)
Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TGKLVE S+ +LV+C ++  GC G       +EY  + G+     YPY+  
Sbjct: 139 TVEGINKIRTGKLVELSEQELVDCERRSHGCKG-GYPPYALEYVAKNGIHLRSKYPYKAK 197
Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
            G           VK          N    +  I  +   + V   G     Y G     
Sbjct: 198 QGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF-- 255
Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNN--ACGIE 176
            +  C     G AV  VGYGK     Y L +NSWG    ++G+ +I+R  GN+   CG+ 
Sbjct: 256 -EGPCGTKVDG-AVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLY 313
Query: 177 TIAGYAT 183
             + Y T
Sbjct: 314 KSSYYPT 320

>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 19/189 (10%)
Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN 61
           +EG   I TG+L+  S+ +L++C ++  GC G   L   ++Y   +G+   + YPY    
Sbjct: 34  VEGINKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYA-LQYVANSGIHLRQYYPY---E 89
Query: 62  GEKFKCAYDKS---KVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPI 118
           G + +C   ++   KVK          N    +++I  +   + V   G     Y G   
Sbjct: 90  GVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIF 149
Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN----NACG 174
                 C   +I HAV  VGYG      Y L +NSWG    + G+ +I+RG+     ACG
Sbjct: 150 AGP---CG-TSIDHAVAAVGYGND----YILIKNSWGTGWGEGGYIRIKRGSGNPQGACG 201
Query: 175 IETIAGYAT 183
           + + + + T
Sbjct: 202 VLSDSVFPT 210

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	187
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	5e-54
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	1e-50
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	7e-45
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	2e-44
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	2e-44
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	5e-44
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	7e-44
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	7e-44
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	9e-44
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	1e-43
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	3e-43
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	2e-42
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	8e-42
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	1e-41
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	1e-40
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	1e-40
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	2e-40
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	3e-40
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	4e-40
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	6e-40
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	2e-39
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	3e-39
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	7e-39
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	8e-39
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	2e-38
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	3e-38
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	9e-38
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	9e-38
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	2e-37
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	5e-37
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	1e-36
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	3e-35
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	9e-35
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	1e-34
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	1e-34
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	2e-33
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	4e-33
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	1e-32
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	2e-32
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	9e-04

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214

 Score =  169 bits (432), Expect = 5e-54
 Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 9/187 (4%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
           +EGQ+ +  G L+  S+ +L++C K    C G  GL            GLE+E DY Y+ 
Sbjct: 34  VEGQWFLNQGTLLSLSEQELLDCDKMDKACMG--GLPSNAYSAIKNLGGLETEDDYSYQG 91

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHFYNGTPI 118
                  C +   K K+   +D +  + +E  +   L K GP+SV +N   + FY     
Sbjct: 92  HMQ---SCQFSAEKAKV-YIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGIS 147

Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETI 178
           +    +CSP  I HAVLLVGYG++ D+P+W  +NSWG    ++G++ + RG+ ACG+ T+
Sbjct: 148 RPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTM 207

Query: 179 AGYATID 185
           A  A +D
Sbjct: 208 ASSAVVD 214

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215

 Score =  161 bits (409), Expect = 1e-50
 Identities = 54/191 (28%), Positives = 81/191 (42%), Gaps = 18/191 (9%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLE----QPIEYTHQAGLESEKDYPY 57
           +E Q+ +    L   S+  LV C K  SGC G  GL     + I   +   + +E  YPY
Sbjct: 34  VECQWFLAGHPLTNLSEQMLVSCDKTDSGCSG--GLMNNAFEWIVQENNGAVYTEDSYPY 91

Query: 58  RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHFYNG- 115
            +G G    C      V   T    +     E  +   L   GP++V ++      Y G 
Sbjct: 92  ASGEGISPPCTTSGHTVGA-TITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGG 150

Query: 116 --TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNAC 173
             T        C    + H VLLVGY     +PYW+ +NSW     +EG+ +I +G+N C
Sbjct: 151 VMTS-------CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQC 203

Query: 174 GIETIAGYATI 184
            ++  A  A +
Sbjct: 204 LVKEEASSAVV 214

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A* Length = 222

 Score =  146 bits (372), Expect = 7e-45
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 23/193 (11%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
            E  Y     + ++ ++ +LV+C    +   GC G  + + IEY    G+  E  Y Y  
Sbjct: 43  TESAYLAYRQQSLDLAEQELVDC----ASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVA 98

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET--MKKILYKYGPLSVGLNGHLI---H 111
                  C    ++    +     Y      +     + +   +  ++V +    +    
Sbjct: 99  REQ---SCRRPNAQRFGISN----YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFR 151

Query: 112 FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            Y+G  I             HAV +VGY     + YW+ RNSW     D G+       +
Sbjct: 152 HYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANID 209

Query: 172 ACGIETIAGYATI 184
              IE       +
Sbjct: 210 LMMIEEYPYVVIL 222

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312

 Score =  148 bits (375), Expect = 2e-44
 Identities = 37/193 (19%), Positives = 66/193 (34%), Gaps = 23/193 (11%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
            E  Y     + ++ ++ +LV+C    +   GC G  + + IEY    G+  E  Y Y  
Sbjct: 123 TESAYLAYRDQSLDLAEQELVDC----ASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVA 178

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET--MKKILYKYGPLSVGLNGHLI---H 111
                  C    ++    +     Y      +     + +   +  ++V +    +    
Sbjct: 179 REQ---SCRRPNAQRFGISN----YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFR 231

Query: 112 FYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            Y+G  I             HAV +VGY     + YW+ RNSW     D G+       +
Sbjct: 232 HYDGRTI--IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANID 289

Query: 172 ACGIETIAGYATI 184
              IE       +
Sbjct: 290 LMMIEEYPYVVIL 302

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329

 Score =  148 bits (376), Expect = 2e-44
 Identities = 57/194 (29%), Positives = 94/194 (48%), Gaps = 23/194 (11%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
           +EGQ A++ G+L   S+  L++C+    G  GCDG  ++    Y H  G+ SE  YPY  
Sbjct: 148 VEGQLALQRGRLTSLSEQNLIDCSSSY-GNAGCDGGWMDSAFSYIHDYGIMSESAYPYE- 205

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLN-GHLIHFYN 114
              +   C +D S+          Y++   G E  +   + + GP++V ++    + FY 
Sbjct: 206 --AQGDYCRFDSSQS---VTTLSGYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFY- 259

Query: 115 GTPIKK---NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-N 170
                     D+ C+ + + H VL+VGYG  +   YW+ +NSWG    + G+++  R   
Sbjct: 260 ----SGGLFYDQTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYG 315

Query: 171 NACGIETIAGYATI 184
           N CGI T A Y  +
Sbjct: 316 NNCGIATAASYPAL 329

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310

 Score =  147 bits (373), Expect = 5e-44
 Identities = 61/194 (31%), Positives = 93/194 (47%), Gaps = 23/194 (11%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYPYRN 59
           +EGQY       + FS+ QLV+C++   G  GC G  +E   +Y  Q GLE+E  YPY  
Sbjct: 125 MEGQYMKNERTSISFSEQQLVDCSRPW-GNNGCGGGLMENAYQYLKQFGLETESSYPYT- 182

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLN-GHLIHFYN 114
               + +C Y+K        K   ++    GSE  +K ++   GP +V ++       Y 
Sbjct: 183 --AVEGQCRYNKQLG---VAKVTGFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMY- 236

Query: 115 GTPIKK---NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-N 170
               +      + CSP  + HAVL VGYG Q    YW+ +NSWG    + G+ ++ R   
Sbjct: 237 ----RSGIYQSQTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRG 292

Query: 171 NACGIETIAGYATI 184
           N CGI ++A    +
Sbjct: 293 NMCGIASLASLPMV 306

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331

 Score =  147 bits (373), Expect = 7e-44
 Identities = 61/196 (31%), Positives = 84/196 (42%), Gaps = 26/196 (13%)

Query: 2   LEGQYAIKTGKLVEFSKS--QLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPY 57
           +E Q  I  G   + S S  QLV+C     GC G  G       Y  Q  G++SE  YPY
Sbjct: 149 IESQMKIANGAGYDSSVSEQQLVDCVPNALGCSG--GWMNDAFTYVAQNGGIDSEGAYPY 206

Query: 58  RNGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLN-GHLIHF 112
                    C YD ++V     +   Y       E  +  ++   GP++V  +       
Sbjct: 207 E---MADGNCHYDPNQV---AARLSGYVYLSGPDENMLADMVATKGPVAVAFDADDPFGS 260

Query: 113 YNGTPIKK---NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG 169
           Y           +  C  N   HAVL+VGYG ++   YWL +NSWG     +G+FKI R 
Sbjct: 261 Y-----SGGVYYNPTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARN 315

Query: 170 -NNACGIETIAGYATI 184
            NN CGI  +A   T+
Sbjct: 316 ANNHCGIAGVASVPTL 331

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246

 Score =  145 bits (367), Expect = 7e-44
 Identities = 61/194 (31%), Positives = 96/194 (49%), Gaps = 13/194 (6%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
           +E  +AI TG LV  S+ +L++C  +  GC    G   Q  E+  +  G+ SE DYPY+ 
Sbjct: 35  IEAAHAIATGNLVSLSEQELIDCVDESEGCYN--GWHYQSFEWVVKHGGIASEADYPYKA 92

Query: 60  GNGE-KFKCAYDKSKVKLFTGKDFLYFN---GSETMKKILYKYGPLSVGLNGHLIHFYNG 115
            +G+ K     DK  +  +  +     +    +E+  +      P+SV ++    HFY+G
Sbjct: 93  RDGKCKANEIQDKVTIDNYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSG 152

Query: 116 TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA--- 172
             I       SP  I H VL+VGYG +D + YW+A+NSWG     +G+ +I+R       
Sbjct: 153 G-IYDGGNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLG 211

Query: 173 -CGIETIAGYATID 185
            CG+   A Y  I+
Sbjct: 212 VCGMNYFASYPIIE 225

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441

 Score =  149 bits (379), Expect = 9e-44
 Identities = 58/195 (29%), Positives = 81/195 (41%), Gaps = 14/195 (7%)

Query: 1   MLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCGGCDGLEQPI--EYTHQAGLESEKDYP 56
           MLE +  I T        S  ++V C++   GC G  G    I  +Y    GL  E  +P
Sbjct: 242 MLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEG--GFPYLIAGKYAQDFGLVEEACFP 299

Query: 57  YRNGNGE-KFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHL-IHFY 113
           Y   +   K K    +     +      Y   +E  MK  L  +GP++V    +     Y
Sbjct: 300 YTGTDSPCKMKEDCFRYYSSEYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHY 359

Query: 114 NG---TPIKKNDEICSPNAIGHAVLLVGYG--KQDDIPYWLARNSWGPIGPDEGFFKIER 168
                      D         HAVLLVGYG      + YW+ +NSWG    + G+F+I R
Sbjct: 360 KKGIYHHTGLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRR 419

Query: 169 GNNACGIETIAGYAT 183
           G + C IE+IA  AT
Sbjct: 420 GTDECAIESIAVAAT 434

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220

 Score =  143 bits (363), Expect = 1e-43
 Identities = 61/188 (32%), Positives = 85/188 (45%), Gaps = 15/188 (7%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQA-GLESEKDYPYR 58
           LE   AI TGK++  ++ QLV+CA+      GC G    Q  EY     G+  E  YPY+
Sbjct: 35  LESAVAIATGKMLSLAEQQLVDCAQNF-NNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYK 93

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLN-GHLIHFY 113
             +     C +   K            N     E  M + +  Y P+S      +    Y
Sbjct: 94  GQDD---HCKFQPDKA---IAFVKDVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMY 147

Query: 114 NGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNAC 173
                       +P+ + HAVL VGYG+++ IPYW+ +NSWGP     G+F IERG N C
Sbjct: 148 RKGIYSSTSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMC 207

Query: 174 GIETIAGY 181
           G+   A Y
Sbjct: 208 GLAACASY 215

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215

 Score =  142 bits (360), Expect = 3e-43
 Identities = 65/197 (32%), Positives = 94/197 (47%), Gaps = 29/197 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEY-THQAGLESEKDYPYRN 59
           LEGQ   KTGKL+  S   LV+C  +  GCGG  G      +Y     G++SE  YPY  
Sbjct: 34  LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG--GYMTNAFQYVQKNRGIDSEDAYPYVG 91

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLNGHLIHF--- 112
                  C Y+ +       K   Y     G+E  +K+ + + GP+SV ++  L  F   
Sbjct: 92  QEE---SCMYNPTGK---AAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 145

Query: 113 ----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
               Y        DE C+ + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R
Sbjct: 146 SKGVYY-------DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMAR 198

Query: 169 G-NNACGIETIAGYATI 184
             NNACGI  +A +  +
Sbjct: 199 NKNNACGIANLASFPKM 215

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314

 Score =  143 bits (363), Expect = 2e-42
 Identities = 66/197 (33%), Positives = 97/197 (49%), Gaps = 29/197 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEY-THQAGLESEKDYPYRN 59
           LEGQ   KTGKL+  S   LV+C  +  GCGG  G      +Y     G++SE  YPY  
Sbjct: 133 LEGQLKKKTGKLLNLSPQNLVDCVSENDGCGG--GYMTNAFQYVQKNRGIDSEDAYPYV- 189

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLNGHLIHF--- 112
             G++  C Y+ +       K   Y     G+E  +K+ + + GP+SV ++  L  F   
Sbjct: 190 --GQEESCMYNPTGK---AAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFY 244

Query: 113 ----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
               Y        DE C+ + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R
Sbjct: 245 SKGVYY-------DESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMAR 297

Query: 169 G-NNACGIETIAGYATI 184
             NNACGI  +A +  +
Sbjct: 298 NKNNACGIANLASFPKM 314

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218

 Score =  138 bits (351), Expect = 8e-42
 Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 29/198 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 35  LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 94

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLNGHLIHF-- 112
             +    KC YD             Y     G E  +K+ +   GP+SVG++     F  
Sbjct: 95  AMDQ---KCQYDSKYR---AATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL 148

Query: 113 -----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE 167
                Y        +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ 
Sbjct: 149 YRSGVYY-------EPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMA 200

Query: 168 RG-NNACGIETIAGYATI 184
           R   N CGI +   Y  I
Sbjct: 201 RNKGNHCGIASFPSYPEI 218

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315

 Score =  141 bits (357), Expect = 1e-41
 Identities = 63/198 (31%), Positives = 92/198 (46%), Gaps = 29/198 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
           LE Q  +KTGKLV  S   LV+C+ +  G  GC+G  +    +Y     G++S+  YPY+
Sbjct: 132 LEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYK 191

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSET-MKKILYKYGPLSVGLNGHLIHF-- 112
             +    KC YD             Y     G E  +K+ +   GP+SVG++     F  
Sbjct: 192 AMDQ---KCQYDSKYR---AATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFL 245

Query: 113 -----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIE 167
                Y        +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ 
Sbjct: 246 YRSGVYY-------EPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMA 297

Query: 168 RG-NNACGIETIAGYATI 184
           R   N CGI +   Y  I
Sbjct: 298 RNKGNHCGIASFPSYPEI 315

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216

 Score =  136 bits (344), Expect = 1e-40
 Identities = 53/198 (26%), Positives = 84/198 (42%), Gaps = 29/198 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
           +EG   I+TGKLVE S+ +LV+C ++  GC G  G     +EY  + G+     YPY+  
Sbjct: 34  VEGINKIRTGKLVELSEQELVDCERRSHGCKG--GYPPYALEYVAKNGIHLRSKYPYK-- 89

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFN-GSET-MKKILYKYGPLSVGLNGHLIHF------ 112
             ++  C   +    +            +E  +   + K  P+SV +      F      
Sbjct: 90  -AKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGG 147

Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            + G         C    + HAV  VGYGK     Y L +NSWG    ++G+ +I+R   
Sbjct: 148 IFEGP--------CGTK-VDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPG 198

Query: 172 A----CGIETIAGYATID 185
                CG+   + Y T +
Sbjct: 199 NSPGVCGLYKSSYYPTKN 216

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265

 Score =  137 bits (347), Expect = 1e-40
 Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 41/222 (18%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT----HQAGLESEKDYPY 57
           LE    +K  +  + S   +  C K       CD    P+E+         L +E +YPY
Sbjct: 43  LETIRCMKGYEPTKISALYVANCYKG-EHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPY 101

Query: 58  R---------------NGNGEKFKCAYDKSKVKLFTGKDFLYFNGS----------ETMK 92
                               +  K  ++K++     GK +  +             + +K
Sbjct: 102 NYVKVGEQCPKVEDHWMNLWDNGKILHNKNEPNSLDGKGYTAYESERFHDNMDAFVKIIK 161

Query: 93  KILYKYGPLSVGLN--GHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDI----- 145
             +   G +   +     + + ++G   KK   +C  +   HAV +VGYG   +      
Sbjct: 162 TEVMNKGSVIAYIKAENVMGYEFSG---KKVKNLCGDDTADHAVNIVGYGNYVNSEGEKK 218

Query: 146 PYWLARNSWGPIGPDEGFFKIER-GNNACGIETIAGYATIDV 186
            YW+ RNSWGP   DEG+FK++  G   C    I      +V
Sbjct: 219 SYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV 260

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220

 Score =  135 bits (342), Expect = 2e-40
 Identities = 61/199 (30%), Positives = 90/199 (45%), Gaps = 28/199 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 34  LEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 92

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHF----- 112
                   C Y+           F+     E  + K +   GP+SV ++     F     
Sbjct: 93  ATEE---SCKYNPKYSVA-NDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 148

Query: 113 --YNGTPIKKNDEICSPNAIGHAVLLVGYGKQ----DDIPYWLARNSWGPIGPDEGFFKI 166
             Y        +  CS   + H VL+VGYG +    D+  YWL +NSWG      G+ K+
Sbjct: 149 GIY-------FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 201

Query: 167 ERG-NNACGIETIAGYATI 184
            +   N CGI + A Y T+
Sbjct: 202 AKDRRNHCGIASAASYPTV 220

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243

 Score =  135 bits (343), Expect = 3e-40
 Identities = 54/205 (26%), Positives = 84/205 (40%), Gaps = 35/205 (17%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
           +E QYAI+   L  FS+ +LV+C+ + +GC G  G      +      GL S+ DYPY +
Sbjct: 53  VESQYAIRKKALFLFSEQELVDCSVKNNGCYG--GYITNAFDDMIDLGGLCSQDDYPYVS 110

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLN-GHLIHFYNG-- 115
              E   C   +   +        Y +  +   K+ L   GP+S+ +       FY G  
Sbjct: 111 NLPE--TCNLKRCNER---YTIKSYVSIPDDKFKEALRYLGPISISIAASDDFAFYRGGF 165

Query: 116 -TPIKKNDEICSPNAIGHAVLLVGYG----------KQDDIPYWLARNSWGPIGPDEGFF 164
                     C      HAV+LVGYG          + +   Y++ +NSWG    + G+ 
Sbjct: 166 YDG------ECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYI 218

Query: 165 KIERGNNA----CGIETIAGYATID 185
            +E   N     C I T A    ++
Sbjct: 219 NLETDENGYKKTCSIGTEAYVPLLE 243

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325

 Score =  137 bits (347), Expect = 4e-40
 Identities = 51/216 (23%), Positives = 77/216 (35%), Gaps = 45/216 (20%)

Query: 1   MLEGQYAIKTG-KLVEFSKSQLVECAKQCSGCG-GCDG--LEQPIEYTHQAGLESEKDYP 56
            +  ++    G + V  S   L+ C   CS CG GC+G   ++   Y    GL S+   P
Sbjct: 108 AMSDRFCTMGGVQDVHISAGDLLAC---CSDCGDGCNGGDPDRAWAYFSSTGLVSDYCQP 164

Query: 57  YRNGNGE----------------------KFKCAYDKSKVKLFTGKDFLYFNGSETMKKI 94
           Y   +                         + C      V  +         G +   + 
Sbjct: 165 YPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSYALQGEDDYMRE 224

Query: 95  LYKYGPLSVGLNGH--LIHF----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYW 148
           L+  GP  V  + +   I +    Y+                GHAV LVG+G  + +PYW
Sbjct: 225 LFFRGPFEVAFDVYEDFIAYNSGVYHHV--------SGQYLGGHAVRLVGWGTSNGVPYW 276

Query: 149 LARNSWGPI-GPDEGFFKIERGNNACGIETIAGYAT 183
              NSW    G  +G+F I RG++ CGIE       
Sbjct: 277 KIANSWNTEWG-MDGYFLIRRGSSECGIEDGGSAGI 311

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316

 Score =  136 bits (346), Expect = 6e-40
 Identities = 61/199 (30%), Positives = 91/199 (45%), Gaps = 28/199 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
           LEGQ   KTG+L+  S+  LV+C+    G  GC+G  ++   +Y     GL+SE+ YPY 
Sbjct: 130 LEGQMFRKTGRLISLSEQNLVDCSGPQ-GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYE 188

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLNGHLIHF----- 112
                +  C Y+           F+     E  + K +   GP+SV ++     F     
Sbjct: 189 ---ATEESCKYNPKYSVA-NDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 244

Query: 113 --YNGTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKI 166
             Y        +  CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+
Sbjct: 245 GIY-------FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKM 297

Query: 167 ERG-NNACGIETIAGYATI 184
            +   N CGI + A Y T+
Sbjct: 298 AKDRRNHCGIASAASYPTV 316

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322

 Score =  135 bits (343), Expect = 2e-39
 Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 29/198 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
           +EG   I+TGKLVE S+ +LV+C ++  GC G  G     +EY  + G+     YPY+  
Sbjct: 140 VEGINKIRTGKLVELSEQELVDCERRSHGCKG--GYPPYALEYVAKNGIHLRSKYPYK-- 195

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYF-NGSET-MKKILYKYGPLSVGLNGHLIHF------ 112
             ++  C   +    +            +E  +   + K  P+SV +      F      
Sbjct: 196 -AKQGTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGG 253

Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            + G         C    +  AV  VGYGK     Y L +NSWG    ++G+ +I+R   
Sbjct: 254 IFEGP--------CGTK-VDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPG 304

Query: 172 A----CGIETIAGYATID 185
                CG+   + Y T +
Sbjct: 305 NSPGVCGLYKSSYYPTKN 322

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241

 Score =  133 bits (336), Expect = 3e-39
 Identities = 56/205 (27%), Positives = 87/205 (42%), Gaps = 35/205 (17%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
           +E QYAI+  KL+  S+ +LV+C+ +  GC G  GL     E   +  G+  + DYPY +
Sbjct: 51  VESQYAIRKNKLITLSEQELVDCSFKNYGCNG--GLINNAFEDMIELGGICPDGDYPYVS 108

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSET-MKKILYKYGPLSVGLN-GHLIHFYNG-- 115
                  C  D+   K        Y +  +  +K+ L   GP+S+ +       FY    
Sbjct: 109 DAPN--LCNIDRCTEK---YGIKNYLSVPDNKLKEALRFLGPISISVAVSDDFAFYKEGI 163

Query: 116 -TPIKKNDEICSPNAIGHAVLLVGYG----------KQDDIPYWLARNSWGPIGPDEGFF 164
                     C    + HAV+LVG+G          K +   Y++ +NSWG    + GF 
Sbjct: 164 FDG------ECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFI 216

Query: 165 KIERGNNA----CGIETIAGYATID 185
            IE   +     CG+ T A    I+
Sbjct: 217 NIETDESGLMRKCGLGTDAFIPLIE 241

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213

 Score =  131 bits (332), Expect = 7e-39
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 31/197 (15%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
           +EG   I TG+L+  S+ +L++C ++  GC G  G     ++Y   +G+   + YPY   
Sbjct: 34  VEGINKIVTGQLLSLSEQELLDCERRSYGCRG--GFPLYALQYVANSGIHLRQYYPYE-- 89

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHF------- 112
            G + +C   ++K               +E          P+S+ +      F       
Sbjct: 90  -GVQRQCRASQAKGPKVKTDGVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGI 148

Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA 172
           + G         C  + I HAV  VGYG      Y L +NSWG    + G+ +I+RG+  
Sbjct: 149 FAGP--------CGTS-IDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGN 195

Query: 173 ----CGIETIAGYATID 185
               CG+ + + + T +
Sbjct: 196 PQGACGVLSDSVFPTKN 212

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215

 Score =  131 bits (331), Expect = 8e-39
 Identities = 51/195 (26%), Positives = 84/195 (43%), Gaps = 28/195 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEY-THQAGLESEKDYPYRN 59
           +E    I+TG+L+  S+ +LV+C     GC G  G      +Y     G++++++YPY  
Sbjct: 34  VESINKIRTGQLISLSEQELVDCDTASHGCNG--GWMNNAFQYIITNGGIDTQQNYPYS- 90

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHF------- 112
               +  C   + +V    G   +  N    ++  +    P+SV +      F       
Sbjct: 91  --AVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGI 147

Query: 113 YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA 172
           + G         C   A  H V++VGYG Q    YW+ RNSWG    ++G+  +ER   +
Sbjct: 148 FTGP--------CG-TAQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVAS 198

Query: 173 ----CGIETIAGYAT 183
               CGI  +  Y T
Sbjct: 199 SAGLCGIAQLPSYPT 213

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218

 Score =  130 bits (329), Expect = 2e-38
 Identities = 53/196 (27%), Positives = 82/196 (41%), Gaps = 29/196 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
           +EG   I TG L+E S+ +LV+C K   GC G  G     ++Y    G+ + K YPY+  
Sbjct: 34  VEGINKIVTGNLLELSEQELVDCDKHSYGCKG--GYQTTSLQYVANNGVHTSKVYPYQ-- 89

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFN-GSET-MKKILYKYGPLSVGLNGHLIHF------ 112
             +++KC              +       ET     L    PLSV +      F      
Sbjct: 90  -AKQYKCRATDKPGPKVKITGYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSG 147

Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            ++G         C    + HAV  VGYG  D   Y + +NSWGP   ++G+ +++R + 
Sbjct: 148 VFDGP--------CGTK-LDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSG 198

Query: 172 A----CGIETIAGYAT 183
                CG+   + Y  
Sbjct: 199 NSQGTCGVYKSSYYPF 214

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221

 Score =  129 bits (328), Expect = 3e-38
 Identities = 53/198 (26%), Positives = 82/198 (41%), Gaps = 33/198 (16%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQ-AGLESEKDYPYRN 59
           +EG   I TG L+  S+ QLV+C     GC G  G      ++     G+ SE+ YPYR 
Sbjct: 36  VEGINQIVTGDLISLSEQQLVDCTTANHGCRG--GWMNPAFQFIVNNGGINSEETYPYRG 93

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSETMKKILYKYGPLSVGLNGHLIHF---- 112
            +G    C    +           Y N    +E   +      P+SV ++     F    
Sbjct: 94  QDG---ICNSTVNAPV---VSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYR 147

Query: 113 ---YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG 169
              + G+        C+ +   HA+ +VGYG ++D  +W+ +NSWG    + G+ + ER 
Sbjct: 148 SGIFTGS--------CNIS-ANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERN 198

Query: 170 NNA----CGIETIAGYAT 183
                  CGI   A Y  
Sbjct: 199 IENPDGKCGITRFASYPV 216

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214

 Score =  128 bits (324), Expect = 9e-38
 Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 33/194 (17%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
           +EG   I TG+L+  S+ +L++C ++  GC G  G     ++Y    G+ +E++YPY   
Sbjct: 34  IEGINKIITGQLISLSEQELLDCERRSHGCDG--GYQTTSLQYVVDNGVHTEREYPYE-- 89

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFN-GSET-MKKILYKYGPLSVGLNGHLIHF------ 112
             ++ +C     K        + Y     E  + + +    P+SV  +     F      
Sbjct: 90  -KKQGRCRAKDKKGPKVYITGYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGG 147

Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-- 169
            Y G         C  N   HAV  VGYGK     Y L +NSWGP   ++G+ +I+R   
Sbjct: 148 IYEGP--------CGTN-TDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASG 194

Query: 170 --NNACGIETIAGY 181
                CG+ T + +
Sbjct: 195 RSKGTCGVYTSSFF 208

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212

 Score =  128 bits (324), Expect = 9e-38
 Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 33/198 (16%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPYRNG 60
           +EG   I+TG L ++S+ +L++C ++  GC G  G     ++   Q G+     YPY   
Sbjct: 34  IEGIIKIRTGNLNQYSEQELLDCDRRSYGCNG--GYPWSALQLVAQYGIHYRNTYPYE-- 89

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFN-GSET-MKKILYKYGPLSVGLNGHLIHF------ 112
            G +  C   +                 +E  +   +    P+SV L      F      
Sbjct: 90  -GVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGG 147

Query: 113 -YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNN 171
            + G         C  N + HAV  VGYG      Y L +NSWG    + G+ +I+RG  
Sbjct: 148 IFVGP--------CG-NKVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTG 194

Query: 172 A----CGIETIAGYATID 185
                CG+ T + Y   +
Sbjct: 195 NSYGVCGLYTSSFYPVKN 212

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277

 Score =  129 bits (326), Expect = 2e-37
 Identities = 47/211 (22%), Positives = 73/211 (34%), Gaps = 38/211 (18%)

Query: 1   MLEGQYAIKTG---KLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDY 55
            +  +  IK          S   +++C       G C+G       +Y HQ G+  E   
Sbjct: 74  AMADRINIKRKGAWPSTLLSVQNVIDC----GNAGSCEGGNDLSVWDYAHQHGIPDETCN 129

Query: 56  PYRNGNGE-----------KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVG 104
            Y+  + E           +FK  +      L+   D+   +G E M   +Y  GP+S G
Sbjct: 130 NYQAKDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCG 189

Query: 105 LN-GHLIHFYNG---TPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPD 160
           +     +  Y G          E      I H V + G+G  D   YW+ RNSWG    +
Sbjct: 190 IMATERLANYTGGIYA------EYQDTTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGE 243

Query: 161 EGFFKIERGNNACG--------IETIAGYAT 183
            G+ +I       G        IE    +  
Sbjct: 244 RGWLRIVTSTYKDGKGARYNLAIEEHCTFGD 274

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229

 Score =  126 bits (320), Expect = 5e-37
 Identities = 56/198 (28%), Positives = 82/198 (41%), Gaps = 30/198 (15%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCS-GCGGCDGL-EQPIEY-THQAGLESEKDYPYR 58
           +EG   IKT KLV  S+ +LV+C    + GC G  GL +   E+   + G+ +E +YPY 
Sbjct: 35  VEGINQIKTNKLVSLSEQELVDCDTDQNQGCNG--GLMDYAFEFIKQRGGITTEANYPYE 92

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYF-NGSETMKKILYKYGPLSVGLNGHLIHF----- 112
             +G    C   K      +           E          P+SV ++     F     
Sbjct: 93  AYDG---TCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSE 149

Query: 113 --YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERG 169
             + G+        C    + H V +VGYG   D   YW  +NSWGP   ++G+ ++ERG
Sbjct: 150 GVFTGS--------CGTE-LDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERG 200

Query: 170 ----NNACGIETIAGYAT 183
                  CGI   A Y  
Sbjct: 201 ISDKEGLCGIAMEASYPI 218

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A Length = 220

 Score =  126 bits (318), Expect = 1e-36
 Identities = 55/196 (28%), Positives = 87/196 (44%), Gaps = 27/196 (13%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
           +EG   I TG L+  S+ +LV+C +      GCDG  +    ++  +  G+ +E +YPY 
Sbjct: 34  VEGINKIATGDLISLSEQELVDCGRTQ-NTRGCDGGFMTDGFQFIINNGGINTEANYPYT 92

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHF----- 112
               E+ +C  D  + K  +   +      +E   +    Y P+SV L     +F     
Sbjct: 93  ---AEEGQCNLDLQQEKYVSIDTYENVPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSS 149

Query: 113 --YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG- 169
             + G         C    + HAV +VGYG +  I YW+ +NSWG    +EG+ +I+R  
Sbjct: 150 GIFTGP--------CGTA-VDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNV 200

Query: 170 --NNACGIETIAGYAT 183
                CGI   A Y  
Sbjct: 201 GGVGQCGIAKKASYPV 216

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208

 Score =  121 bits (307), Expect = 3e-35
 Identities = 49/191 (25%), Positives = 78/191 (40%), Gaps = 27/191 (14%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQA-GLESEKDYPYRN 59
           +E    I+TG L+  S+ +LV+C K+  GC G  G      +Y     G++++ +YPY+ 
Sbjct: 34  VESINQIRTGNLISLSEQELVDCDKKNHGCLG--GAFVFAYQYIINNGGIDTQANYPYKA 91

Query: 60  GNGEKFKCAYDKSKVKLFTGKDFLYFN---GSETMKKILYKYGPLSVGLN--GHLIHFYN 114
             G    C      V +  G    Y      +E   K      P +V ++        Y+
Sbjct: 92  VQG---PCQAASKVVSI-DG----YNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYS 143

Query: 115 GTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNA 172
                          + H V +VGY       YW+ RNSWG    ++G+ ++ R  G   
Sbjct: 144 SGIFSG----PCGTKLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGL 195

Query: 173 CGIETIAGYAT 183
           CGI  +  Y T
Sbjct: 196 CGIARLPYYPT 206

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254

 Score =  121 bits (307), Expect = 9e-35
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 53/227 (23%)

Query: 1   MLEGQYAIKTG--KLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYP 56
            +  +  I++G  + VE S   L+ C + C    GC+G  L    +Y  + G+ +     
Sbjct: 39  AMSDRSCIQSGGKQNVELSAVDLLSCCESCGL--GCEGGILGPAWDYWVKEGIVTGSSKE 96

Query: 57  YRNG-------------NGEKFKCAYDK------------------SKVKLFTGKDFLYF 85
              G              G+   C                      ++ K      +   
Sbjct: 97  NHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVK 156

Query: 86  NGSETMKKILYKYGPLSVGLNGH--LIHF----YNGTPIKKNDEICSPNAIGHAVLLVGY 139
           N  + ++K + KYGP+  G   +   +++    Y                 GHA+ ++G+
Sbjct: 157 NDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKHI--------TGETLGGHAIRIIGW 208

Query: 140 GKQDDIPYWLARNSWGPI-GPDEGFFKIERGNNACGIETIAGYATID 185
           G ++  PYWL  NSW    G + G+F+I RG + C IE+      I+
Sbjct: 209 GVENKAPYWLIANSWNEDWG-ENGYFRIVRGRDECSIESEVTAGRIN 254

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224

 Score =  120 bits (304), Expect = 1e-34
 Identities = 48/201 (23%), Positives = 82/201 (40%), Gaps = 34/201 (16%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
           LEG +  KTGKLV  S+ +L++C++   G   C G  +    +Y     G+ SE  YPY 
Sbjct: 40  LEGAHCAKTGKLVSLSEQELMDCSRA-EGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYL 98

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFN---GSETMKKILYKYGPLSVGLNGHLIHF--- 112
             +    +C     +      K   + +    SE   K      P+S+ +    + F   
Sbjct: 99  ARDE---ECRAQSCEK---VVKILGFKDVPRRSEAAMKAALAKSPVSIAIEADQMPFQFY 152

Query: 113 ----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD--IPYWLARNSWGPIGPDEGFFKI 166
               ++ +        C  + + H VLLVGYG   +    +W+ +NSWG     +G+  +
Sbjct: 153 HEGVFDAS--------CGTD-LDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYM 203

Query: 167 ERG---NNACGIETIAGYATI 184
                    CG+   A +  +
Sbjct: 204 AMHKGEEGQCGLLLDASFPVM 224

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262

 Score =  121 bits (306), Expect = 1e-34
 Identities = 55/201 (27%), Positives = 84/201 (41%), Gaps = 33/201 (16%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDG--LEQPIEY-THQAGLESEKDYPYR 58
           +EG  AI+TG LV  S+ +L++C    +   GC G  ++   EY  +  GL +E  YPYR
Sbjct: 37  VEGINAIRTGSLVSLSEQELIDCDT--ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYR 94

Query: 59  NGNGEKFKCAYDKSKVKLFTG-KDFLYFN---GSETMKKILYKYGPLSVGLNGHLIHF-- 112
              G    C   ++            + +    SE          P+SV +      F  
Sbjct: 95  AARG---TCNVARAAQNSPVVVHIDGHQDVPANSEEDLARAVANQPVSVAVEASGKAFMF 151

Query: 113 -----YNGTPIKKNDEICSPNAIGHAVLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKI 166
                + G         C    + H V +VGYG  +D   YW  +NSWGP   ++G+ ++
Sbjct: 152 YSEGVFTGE--------CGTE-LDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRV 202

Query: 167 ERGNNA----CGIETIAGYAT 183
           E+ + A    CGI   A Y  
Sbjct: 203 EKDSGASGGLCGIAMEASYPV 223

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266

 Score =  118 bits (299), Expect = 2e-33
 Identities = 52/224 (23%), Positives = 79/224 (35%), Gaps = 45/224 (20%)

Query: 1   MLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYP 56
            +  +  I T     VE S   L+ C     G  GC+G    +   +  + GL S   Y 
Sbjct: 43  AISDRICIHTNAHVSVEVSAEDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYE 101

Query: 57  YRNG-------------NGEKFKCAYDK-----------------SKVKLFTGKDFLYFN 86
              G             NG +  C  +                   + K +    +   N
Sbjct: 102 SHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN 161

Query: 87  GSETMKKILYKYGPLSVGLNGHL-IHFYNGTPIKK--NDEICSPNAIGHAVLLVGYGKQD 143
             + +   +YK GP+    + +     Y     K      +      GHA+ ++G+G ++
Sbjct: 162 SEKDIMAEIYKNGPVEGAFSVYSDFLLY-----KSGVYQHVTGEMMGGHAIRILGWGVEN 216

Query: 144 DIPYWLARNSWGPI-GPDEGFFKIERGNNACGIETIAGYATIDV 186
             PYWL  NSW    G D GFFKI RG + CGIE+         
Sbjct: 217 GTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVVAGIPRT 259

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317

 Score =  119 bits (299), Expect = 4e-33
 Identities = 55/226 (24%), Positives = 84/226 (37%), Gaps = 49/226 (21%)

Query: 1   MLEGQYAIKTGKL--VEFSKSQLVECAKQCSGCGGCDG--LEQPIEYTHQAGLESEKDYP 56
            +  +  I T     VE S   L+ C     G  GC+G    +   +  + GL S   Y 
Sbjct: 100 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCG-DGCNGGYPAEAWNFWTRKGLVSGGLYE 158

Query: 57  YRNG-------------NGEKFKCAYDK-----------------SKVKLFTGKDFLYFN 86
              G             NG +  C  +                   + K +    +   N
Sbjct: 159 SHVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSN 218

Query: 87  GSETMKKILYKYGPLSVGLNGHL-IHFYNGTPIKKN---DEICSPNAIGHAVLLVGYGKQ 142
             + +   +YK GP+    + +     Y      K+     +      GHA+ ++G+G +
Sbjct: 219 SEKDIMAEIYKNGPVEGAFSVYSDFLLY------KSGVYQHVTGEMMGGHAIRILGWGVE 272

Query: 143 DDIPYWLARNSWGPI-GPDEGFFKIERGNNACGIET--IAGYATID 185
           +  PYWL  NSW    G D GFFKI RG + CGIE+  +AG    D
Sbjct: 273 NGTPYWLVANSWNTDWG-DNGFFKILRGQDHCGIESEVVAGIPRTD 317

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222

 Score =  115 bits (290), Expect = 1e-32
 Identities = 51/191 (26%), Positives = 75/191 (39%), Gaps = 15/191 (7%)

Query: 2   LEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY-THQAGLESEKDYPYRNG 60
           +EG  AI TG+L+  S+ Q+V+C        G D  +    +     G+ S+ +YPY   
Sbjct: 34  IEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGD-ADDAFRWVITNGGIASDANYPYTGV 92

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLN--GHLIHFYNGTPI 118
           +G    C  +K       G  +     S +         P+SV +         Y G  I
Sbjct: 93  DG---TCDLNKPIAARIDG--YTNVPNSSSALLDAVAKQPVSVNIYTSSTSFQLYTGPGI 147

Query: 119 KKNDE-ICSPNAIGHAVLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERGNNA---- 172
                    P  + H VL+VGYG       YW+ +NSWG     +G+  I R  N     
Sbjct: 148 FAGSSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGV 207

Query: 173 CGIETIAGYAT 183
           C I+    Y T
Sbjct: 208 CAIDAWGSYPT 218

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291

 Score =  116 bits (292), Expect = 2e-32
 Identities = 37/199 (18%), Positives = 69/199 (34%), Gaps = 25/199 (12%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVEC--AKQCSGCGGCDG---LEQPIEYTHQAGLESEKDY 55
            ++ +  I   +  EF  S+L      ++  G    D    +   I+  H+ G+  EK++
Sbjct: 86  AIQFER-IHDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEW 144

Query: 56  PYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGS--------------ETMKKILYKYGPL 101
           PY +   +     +           D  Y +                + +K  L    P 
Sbjct: 145 PYGDTPADPRTEEFPPGAPASKKPSDQCYKDAQNYKITEYSRVAQDIDHLKACLAVGSPF 204

Query: 102 SVGLNGH--LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGP 159
             G + +   +   +                GHAVL VGY   D+I ++  RNSWG    
Sbjct: 205 VFGFSVYNSWVGNNSLPVRIPLPTKNDTLEGGHAVLCVGYD--DEIRHFRIRNSWGNNVG 262

Query: 160 DEGFFKIERG-NNACGIET 177
           ++G+F +     +   +  
Sbjct: 263 EDGYFWMPYEYISNTQLAD 281

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Length = 383

 Score = 38.3 bits (88), Expect = 9e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 132 HAVLLVGYGK-QDDIPYWLARNSWGPIGPDEGFFKI 166
           H + + G  K Q+   Y++ +NSWG      G +  
Sbjct: 318 HGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYA 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	187
1m6d_A	214	Cathepsin F, catsf; papain family cysteine proteas	100.0
3i06_A	215	Cruzipain; autocatalytic cleavage, glycoprotein, p	100.0
3kwz_A	215	Cathepsin K; enzyme inhibitor, covalent reversible	100.0
8pch_A	220	Cathepsin H; hydrolase, protease, cysteine protein	100.0
3qt4_A	329	Cathepsin-L-like midgut cysteine proteinase; hydro	100.0
2xu3_A	220	Cathepsin L1; hydrolase, drug design, thiol protea	100.0
3qj3_A	331	Cathepsin L-like protein; hydrolase, proteinase, l	100.0
2o6x_A	310	Procathepsin L1, secreted cathepsin L 1; hydrolase	100.0
3ovx_A	218	Cathepsin S; hydrolase, covalent inhibitor, aldehy	100.0
3f5v_A	222	DER P 1 allergen; allergy, asthma, DUST mites, gly	100.0
2b1m_A	246	SPE31; papain-like, sugar binding protein; HET: NA	100.0
1xkg_A	312	DER P I, major mite fecal allergen DER P 1; major	100.0
1by8_A	314	Protein (procathepsin K); hydrolase(sulfhydryl pro	100.0
1iwd_A	215	Ervatamin B; cysteine protease, alpha-beta protein	100.0
1cqd_A	221	Protein (protease II); cysteine protease, glycopro	100.0
1ppo_A	216	Protease omega; hydrolase(thiol protease); 1.80A {	100.0
3u8e_A	222	Papain-like cysteine protease; papain-like cystein	100.0
2c0y_A	315	Procathepsin S; proenzyme, proteinase, hydrolase,	100.0
1yal_A	218	Chymopapain; hydrolase, thiol protease; 1.70A {Car	100.0
1cs8_A	316	Human procathepsin L; prosegment, propeptide, inhi	100.0
2oul_A	241	Falcipain 2; cysteine protease, inhibitor, macromo	100.0
3p5u_A	220	Actinidin; SAD, cysteine proteinases, hydrolase; 1	100.0
3hhi_A	325	Cathepsin B-like cysteine protease; occluding loop	100.0
3bwk_A	243	Cysteine protease falcipain-3; malaria, hydrolase;	100.0
2cio_A	212	Papain; hydrolase/inhibitor, complex hydrolase/inh	100.0
3f75_A	224	Toxopain-2, cathepsin L protease; medical structur	100.0
1pci_A	322	Procaricain; zymogen, hydrolase, thiol protease; 3	100.0
2bdz_A	214	Mexicain; cysteine protease, peptidase_C1, papain-	100.0
1o0e_A	208	Ervatamin C; plant cysteine protease, two domain,	100.0
1s4v_A	229	Cysteine endopeptidase; KDEL ER retention signal,	100.0
1deu_A	277	Procathepsin X; cysteine protease, proregion, pros	100.0
2fo5_A	262	Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst	100.0
3ioq_A	213	CMS1MS2; caricaceae, cysteine protease, papain fam	100.0
3pdf_A	441	Cathepsin C, dipeptidyl peptidase 1; two domains,	100.0
3cbj_A	266	Cathepsin B; cathepsin B, occluding loop, chagas d	100.0
3pbh_A	317	Procathepsin B; thiol protease, cysteine protease,	100.0
3qsd_A	254	Cathepsin B-like peptidase (C01 family); cysteine	100.0
3tnx_A	363	Papain; hydrolase, cytoplasm for recombinant expre	100.0
2wbf_X	265	Serine-repeat antigen protein; SERA, malaria, vacu	100.0
3ois_A	291	Cysteine protease; alpha and beta, hydrolase; HET:	100.0
2cb5_A	453	Protein (bleomycin hydrolase); aminopeptidase, cys	99.98
2e01_A	457	Cysteine proteinase 1; bleomycin hydrolase, thiol	99.97
3pw3_A	383	Aminopeptidase C; bleomycin, cysteine proteinase f	99.93
1pxv_A	183	Cysteine protease; hydrolase; 1.80A {Staphylococcu	96.98
1cv8_A	174	Staphopain; cysteine protease, thiol protease, pap	96.02
1x9y_A	367	Cysteine proteinase; half-barrel, barrel-sandwich-	93.2
3erv_A	236	Putative C39-like peptidase; structural genomics,	91.16

>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1

Probab=100.00  E-value=2e-55  Score=346.05  Aligned_cols=180  Identities=34%  Similarity=0.706  Sum_probs=163.8

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHh-CcccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++ .|+++|++|||.   +....|.....+..+++.
T Consensus        33 ~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~~i~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i~  108 (214)
T 1m6d_A           33 NVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGL-PSNAYSAIKNLGGLETEDDYSYQ---GHMQSCQFSAEKAKVYIQ  108 (214)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCCCGGGCCBCCS
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCC-HHHHHHHHHHhcCcccccCcCcC---CCCCcCCCCcccceEEec
Confidence            58999999999999999999999997788999999 9999999765 599999999999   888899876665667888


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCCCC
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIG  158 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~W  158 (187)
                       ++..++ ++++||++|+++|||+++|++..|++|++|||....+.|+...++|||+|||||+++|.+|||||||||++|
T Consensus       109 -~~~~i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~W  187 (214)
T 1m6d_A          109 -DSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDW  187 (214)
T ss_dssp             -EEEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTS
T ss_pred             -CEEEeChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcCCCCcCCEEEEEEEEeecCCcEEEEEEeCCCCCc
Confidence             888887 899999999999999999999559999999998632358776789999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCeecccceeeEEEEE
Q psy274          159 PDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       159 G~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      |++|||||+|+.|.|||++.+++|++|
T Consensus       188 Ge~Gy~~i~r~~n~Cgi~~~~~~~~~~  214 (214)
T 1m6d_A          188 GEKGYYYLHRGSGACGVNTMASSAVVD  214 (214)
T ss_dssp             TBTTEEEEESSSCGGGTTTTCEEEECC
T ss_pred             ccCcEEEEEcCCCccccCceeEEEEeC
Confidence            999999999999999999999999975

>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...

Probab=100.00  E-value=1.6e-54  Score=341.20  Aligned_cols=178  Identities=28%  Similarity=0.557  Sum_probs=161.0

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhC---cccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQA---GLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~---Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|++++   |+++|++|||....+..+.|........++
T Consensus        33 ale~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~y~~~~~~gGi~~e~~yPY~~~~~~~~~C~~~~~~~~~~  111 (215)
T 3i06_A           33 NVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGL-MNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGAT  111 (215)
T ss_dssp             HHHHHHHHTTSCCCCCCHHHHHHHCSSSCGGGCCC-HHHHHHHHHHHSTTEEEC-CCSCCCCTTSCCCCCCCSSCCEEEE
T ss_pred             HHHHHHHHhCCCCCccCHHHHhccCCCCCCCCCCC-HHHHHHHHHHhccccccccCccCCcCCCCCCCccccCCcccceE
Confidence            58999999999999999999999998789999999 99999997653   799999999995444556898776667788


Q ss_pred             eccceeEeC-ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274           78 TGKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP  156 (187)
Q Consensus        78 i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~  156 (187)
                      +. +|..++ ++++||++|+++|||+++|++++|+.|++|||..    |.....+|||+|||||++++++|||||||||+
T Consensus       112 i~-~~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~~----~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~  186 (215)
T 3i06_A          112 IT-GHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTT  186 (215)
T ss_dssp             EE-EEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECS----CCCSCCCEEEEEEEEESSSSSCEEEEECSBCT
T ss_pred             ec-ceEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCcccC----CCCCccCcEEEEEEEeccCCcEEEEEECCCCC
Confidence            99 999998 8999999999999999999998899999999964    65556799999999999999999999999999


Q ss_pred             CCCCCcEEEEEecCCeecccceeeEEEE
Q psy274          157 IGPDEGFFKIERGNNACGIETIAGYATI  184 (187)
Q Consensus       157 ~WG~~Gy~~i~~~~n~cgi~~~~~~~~~  184 (187)
                      +||++|||||+|+.|.|||++++++|++
T Consensus       187 ~WGe~Gy~~i~rg~n~cgi~~~~~~~~~  214 (215)
T 3i06_A          187 QWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             TSTBTTEEEEESSSCGGGTTSSEEEEEE
T ss_pred             CcccCceEEEecCCCeecCCCceeEEec
Confidence            9999999999999999999999999986

>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...

Probab=100.00  E-value=1.1e-54  Score=341.89  Aligned_cols=177  Identities=33%  Similarity=0.692  Sum_probs=164.4

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHh-CcccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||+++++++++.++||+|+|+||+..+.||+||+ +..||+|+++ .|+++|++|||.   +..+.|...+.....+++
T Consensus        33 ~~e~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i~  108 (215)
T 3kwz_A           33 ALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGY-MTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCR  108 (215)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEECCC
T ss_pred             HHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCC-HHHHHHHHHHhCCccccccCCCc---cCCCccccCCCCceeEec
Confidence            58999999999999999999999997789999999 9999999755 499999999999   788899977777778899


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|+++|||+++|++  ++|+.|++|||..  +.|+...++|||+|||||++++++|||||||||
T Consensus       109 -~~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~--~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG  185 (215)
T 3kwz_A          109 -GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWG  185 (215)
T ss_dssp             -CEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCTTCCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             -ceEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECC--CCCCCChhhCEEEEEEEeccCCceEEEEECCcC
Confidence             999997  889999999999999999999  4899999999988  678776789999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+|+. |.|||++.+++|+|
T Consensus       186 ~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p~~  215 (215)
T 3kwz_A          186 ENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             TTSTBTTEEEEESSSSSGGGTTSSCEEECC
T ss_pred             cccccCCEEEEecCCCCccCcCCceeeeeC
Confidence            999999999999997 99999999999974

>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*

Probab=100.00  E-value=2.4e-54  Score=341.16  Aligned_cols=178  Identities=35%  Similarity=0.690  Sum_probs=164.4

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      +||++++|++++.++||+|+|+||+..  +.||+||+ +..||+|+++. |+++|++|||.   +..+.|...+.....+
T Consensus        34 ~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~  109 (220)
T 8pch_A           34 ALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGL-PSQAFEYIRYNKGIMGEDTYPYK---GQDDHCKFQPDKAIAF  109 (220)
T ss_dssp             HHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEEC
T ss_pred             HHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCC-HHHHHHHHHHcCCcCcccccCcc---CCCCCCCCCCCcceEE
Confidence            589999999999999999999999864  78999999 99999997655 99999999999   7888999877777788


Q ss_pred             eccceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCC--cccEEEEEEEEeecCCccEEEEEc
Q psy274           78 TGKDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPN--AIGHAVLLVGYGKQDDIPYWLARN  152 (187)
Q Consensus        78 i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~--~~~Hav~iVGyg~~~g~~ywivkN  152 (187)
                      +. +|..++  ++++||++|+++|||+++|.+ ++|+.|++|||..  +.|...  .++|||+|||||++++++||||||
T Consensus       110 i~-~~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~--~~~~~~~~~~~HaV~iVGyg~~~g~~yWivkN  186 (220)
T 8pch_A          110 VK-DVANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS--TSCHKTPDKVNHAVLAVGYGEENGIPYWIVKN  186 (220)
T ss_dssp             EE-EEEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECC--SSCCCSTTTCCEEEEEEEEEEETTEEEEEEEC
T ss_pred             eC-CEEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccC--CcCCCCCCcCCcEEEEEEEEccCCeeEEEEEC
Confidence            89 999887  889999999999999999999 7999999999988  677654  689999999999999999999999


Q ss_pred             cCCCCCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274          153 SWGPIGPDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      |||++||++|||||+|+.|.|||++.+++|+..
T Consensus       187 SWG~~WGe~Gy~~i~r~~n~cgi~~~~~~~~p~  219 (220)
T 8pch_A          187 SWGPQWGMNGYFLIERGKNMCGLAACASYPIPL  219 (220)
T ss_dssp             SBCTTSTBTTEEEEECSSCGGGTTTSCEEEEEC
T ss_pred             CCCcCcccCCEEEEEcCCCccccCCCceeEeec
Confidence            999999999999999999999999999999874

>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}

Probab=100.00  E-value=3e-54  Score=358.17  Aligned_cols=177  Identities=29%  Similarity=0.684  Sum_probs=166.1

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFT   78 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i   78 (187)
                      |||++++|++++.++||+|+|+||+..  +.||+||+ +..||+|+++.|+++|++|||.   +..+.|.........++
T Consensus       147 alE~~~~i~~g~~~~LSeQ~LvdC~~~~g~~GC~GG~-~~~a~~yi~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i  222 (329)
T 3qt4_A          147 AVEGQLALQRGRLTSLSEQNLIDCSSSYGNAGCDGGW-MDSAFSYIHDYGIMSESAYPYE---AQGDYCRFDSSQSVTTL  222 (329)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCTTBCCC-HHHHHHHHHHSCBCBTTTSCCC---SSCCCCCCCGGGCCBCC
T ss_pred             HHHHHHHHHcCCcccCCHHHHHHhccccCCCCCCCCC-hhHHHHHHHHcCCCcHHHeeee---cCCCCCCCCcccceEEe
Confidence            589999999999999999999999975  78999999 9999999877799999999999   88889998777777889


Q ss_pred             ccceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           79 GKDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        79 ~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                      + +|..++  ++++||++|+++|||+++|++ ++|+.|++|||..  +.|+...++|||+|||||+++|++|||||||||
T Consensus       223 ~-~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~GVy~~--~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG  299 (329)
T 3qt4_A          223 S-GYYDLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFYD--QTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWG  299 (329)
T ss_dssp             S-EEEECCTTCHHHHHHHHHHTCCEEEEECCCGGGTTEEEEEECC--SSCCSSCCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             c-eEEEecCCCHHHHHHHHHhCCCEEEEEecChhhhhccCceeec--CCCCCCcCCEEEEEEEEEeeCCccEEEEEeCCC
Confidence            9 999997  789999999999999999999 7999999999998  789766789999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+|+. |.|||++.+++|+|
T Consensus       300 ~~WGe~GY~~i~r~~~n~CgI~~~~~yp~v  329 (329)
T 3qt4_A          300 SGWGESGYWRQVRNYGNNCGIATAASYPAL  329 (329)
T ss_dssp             TTSTBTTEEEEESSSSSGGGTTTTCEEEEC
T ss_pred             CcccCCcEEEEEeCCCCccCCCCceeEeeC
Confidence            999999999999998 99999999999985

>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...

Probab=100.00  E-value=1.5e-53  Score=336.70  Aligned_cols=177  Identities=34%  Similarity=0.680  Sum_probs=162.6

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHH-HhCcccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYT-HQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      +||++++|++++.++||+|+|+||+..  +.||+||+ +..||+|+ ++.|+++|++|||.   +..+.|...+....++
T Consensus        33 ~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~-~~~a~~y~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~  108 (220)
T 2xu3_A           33 ALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGL-MDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNPKYSVAN  108 (220)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEEC
T ss_pred             HHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCC-HHHHHHHHHHhCCcccccccCCc---ccCcCccCCCCCccee
Confidence            589999999999999999999999864  78999999 99999997 58999999999999   7788998766666788


Q ss_pred             eccceeEeC-ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEe----ecCCccEEEE
Q psy274           78 TGKDFLYFN-GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLA  150 (187)
Q Consensus        78 i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg----~~~g~~ywiv  150 (187)
                      ++ +|..++ ++++||++|+++|||+++|.+ . +|+.|++|||..  +.|+...++|||+|||||    ++++++||||
T Consensus       109 i~-~~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGygd~~~~~~g~~yWiv  185 (220)
T 2xu3_A          109 DT-GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE--PDCSSEDMDHGVLVVGYGFESTESDNNKYWLV  185 (220)
T ss_dssp             CS-EEEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCSSCCCEEEEEEEEEECCCSSSCCEEEEE
T ss_pred             ee-eEEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcC--CCCCCCCCCeEEEEEEcCCccccCCCCcEEEE
Confidence            99 999998 899999999999999999999 4 899999999987  568776789999999999    6789999999


Q ss_pred             EccCCCCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          151 RNSWGPIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       151 kNSWG~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      |||||++||++|||||+|+. |.|||++++++|++
T Consensus       186 kNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p~~  220 (220)
T 2xu3_A          186 KNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  220 (220)
T ss_dssp             ECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             EeCCCCCcccCcEEEEecCCCCcCCccccceeeeC
Confidence            99999999999999999997 89999999999974

>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0

Probab=100.00  E-value=9.4e-54  Score=355.75  Aligned_cols=177  Identities=33%  Similarity=0.657  Sum_probs=165.9

Q ss_pred             CchhhHHHHhCC--CccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGK--LVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~--~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      +||++++|++++  .++||+|+|+||+..+.||+||+ +..||+|+++. |+++|++|||.   +..+.|.........+
T Consensus       148 alE~~~~i~~g~~~~~~LSeQ~LvdC~~~~~GC~GG~-~~~a~~yi~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~  223 (331)
T 3qj3_A          148 AIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGW-MNDAFTYVAQNGGIDSEGAYPYE---MADGNCHYDPNQVAAR  223 (331)
T ss_dssp             HHHHHHHHHHCTTSCCCBCHHHHHHHCTTSCGGGCCC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCTTSEEEC
T ss_pred             HHHHHHHHHhCCCcccCcCHHHHhhhccCCCCCCCCC-HHHHHHHHHHcCCcCcccccCcc---CCCCCCCCCcccceeE
Confidence            589999999999  99999999999998889999999 99999997655 99999999999   8888999887778889


Q ss_pred             eccceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccC
Q psy274           78 TGKDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSW  154 (187)
Q Consensus        78 i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW  154 (187)
                      +. +|..++  ++++||++|+++|||+++|++ .+|+.|++|||..  +.|+...++|||+|||||+++|++||||||||
T Consensus       224 i~-~~~~v~~~~e~~lk~al~~~GPV~v~i~a~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSW  300 (331)
T 3qj3_A          224 LS-GYVYLSGPDENMLADMVATKGPVAVAFDADDPFGSYSGGVYYN--PTCETNKFTHAVLIVGYGNENGQDYWLVKNSW  300 (331)
T ss_dssp             CS-EEEEESSCCHHHHHHHHHHHCCEEEEECCCTTGGGEEEEEECC--TTCCSSCCCEEEEEEEEEEETTEEEEEEECSB
T ss_pred             ee-EEEEeCCCCHHHHHHHHHhCCCEEEEEEcccccccccCceEeC--CCCCCCcCCEEEEEEEEeccCCceEEEEEcCC
Confidence            99 999997  899999999999999999999 6699999999998  78977779999999999999999999999999


Q ss_pred             CCCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          155 GPIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       155 G~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      |++||++|||||+|+. |.|||++.+.+|+|
T Consensus       301 G~~WGe~GY~~i~r~~~n~CgI~~~~~~p~v  331 (331)
T 3qj3_A          301 GDGWGLDGYFKIARNANNHCGIAGVASVPTL  331 (331)
T ss_dssp             CTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCcCCCCEEEEEcCCCCccCcCCceeeeeC
Confidence            9999999999999998 99999999999985

>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}

Probab=100.00  E-value=8.9e-54  Score=353.27  Aligned_cols=178  Identities=33%  Similarity=0.653  Sum_probs=165.3

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFT   78 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i   78 (187)
                      +||++++|++++.++||+|+|+||+..  +.||+||+ +..||+|+++.|+++|++|||.   +..+.|.........++
T Consensus       124 alE~~~~i~~g~~~~LS~q~lvdC~~~~~~~gC~GG~-~~~a~~yi~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i  199 (310)
T 2o6x_A          124 TMEGQYMKNERTSISFSEQQLVDCSRPWGNNGCGGGL-MENAYQYLKQFGLETESSYPYT---AVEGQCRYNKQLGVAKV  199 (310)
T ss_dssp             HHHHHHHHHHSSCCCBCHHHHHHHCGGGTCCGGGCCC-HHHHHHHHTTSCBCBTTTSCCC---SSCCCCCCCGGGCCEEE
T ss_pred             HHHHHHHHHhCCCcCcCHHHHHHhhhccCCCCCCCCC-HHHHHHHHHHCCcCchhcCCCC---CCCCCccCCCCCCceEe
Confidence            589999999999999999999999863  78999999 9999999889999999999999   88889987665667889


Q ss_pred             ccceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           79 GKDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        79 ~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                      . +|..++  ++++||++|+++|||+++|.+ ++|+.|++|||..  +.|+...++|||+|||||+++|++|||||||||
T Consensus       200 ~-~~~~v~~~~~~~i~~~l~~~GPV~v~i~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG  276 (310)
T 2o6x_A          200 T-GFYTVHSGSEVELKNLVGAEGPAAVAVDVESDFMMYRSGIYQS--QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWG  276 (310)
T ss_dssp             E-EEEEECSCCHHHHHHHHHHHCCEEEEECCCHHHHTEEEEEECC--SSCCTTCCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             C-eEEEeCCCCHHHHHHHHHhcCCeEEEEecchhhhhCCCceecC--CCCCCCCCCEEEEEEEEeccCCceEEEEEeCCC
Confidence            9 999997  889999999999999999999 7999999999987  678866789999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC-CeecccceeeEEEEE
Q psy274          156 PIGPDEGFFKIERGN-NACGIETIAGYATID  185 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~~  185 (187)
                      ++||++|||||+|+. |.|||++.+++|++.
T Consensus       277 ~~WGe~GY~~i~r~~~n~Cgi~~~~~~p~~~  307 (310)
T 2o6x_A          277 LSWGERGYIRMVRNRGNMCGIASLASLPMVA  307 (310)
T ss_dssp             TTSTBTTEEEEECSSSSGGGTTTSEEEEEEE
T ss_pred             CccCCCcEEEEEcCCCCcCCccceeeEEEee
Confidence            999999999999997 899999999999974

>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...

Probab=100.00  E-value=2.1e-53  Score=335.36  Aligned_cols=176  Identities=33%  Similarity=0.705  Sum_probs=162.2

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhc-C--CCCCCCCCccchhhHHHH-HhCcccccccccccCCCCCcccccCCCCccee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECA-K--QCSGCGGCDGLEQPIEYT-HQAGLESEKDYPYRNGNGEKFKCAYDKSKVKL   76 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~-~--~~~gC~gG~~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~   76 (187)
                      +||++++|++++.++||+|+|+||+ .  .+.||+||+ +..|++|+ ++.|+++|++|||.   +..+.|.........
T Consensus        34 ~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~  109 (218)
T 3ovx_A           34 ALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGF-MTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYDSKYRAA  109 (218)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEE
T ss_pred             HHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCC-HHHHHHHHHHhCCcCcccccCcc---CCCCcccCCCcccee
Confidence            5899999999999999999999998 3  278999999 99999996 56899999999999   888899987777778


Q ss_pred             eeccceeEeC--ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEc
Q psy274           77 FTGKDFLYFN--GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARN  152 (187)
Q Consensus        77 ~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN  152 (187)
                      ++. +|..++  ++++||++|+++|||+++|++ . +|+.|++|||..  +.| ...++|||+|||||+++|++||||||
T Consensus       110 ~i~-~~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~--~~~-~~~~~HaV~iVGyg~~~g~~ywivkN  185 (218)
T 3ovx_A          110 TCS-KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYE--PSC-TQNVNHGVLVVGYGDLNGKEYWLVKN  185 (218)
T ss_dssp             CCC-EEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEECC--TTC-CSCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred             eec-cEEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceecC--CCC-CcccCcEEEEEEEeccCCceEEEEEC
Confidence            899 999987  789999999999999999999 4 899999999988  677 44689999999999999999999999


Q ss_pred             cCCCCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          153 SWGPIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      |||++||++|||||+|+. |.|||++++++|+|
T Consensus       186 SWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  218 (218)
T 3ovx_A          186 SWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  218 (218)
T ss_dssp             SBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCCccccCCEEEEecCCCCcccccCceeeeeC
Confidence            999999999999999997 99999999999985

>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*

Probab=100.00  E-value=2.6e-53  Score=335.65  Aligned_cols=175  Identities=22%  Similarity=0.400  Sum_probs=161.3

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeeecc
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGK   80 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~   80 (187)
                      +||+++++++++.++||+|+|+||+. +.||+||+ +..||+|++++|+++|++|||.   +..+.|. .+....+++. 
T Consensus        42 ~lE~~~~~~~~~~~~lS~q~l~dc~~-~~gC~GG~-~~~a~~~~~~~Gi~~e~~yPY~---~~~~~C~-~~~~~~~~i~-  114 (222)
T 3f5v_A           42 ATESAYLAYRQQSLDLAEQELVDCAS-QHGCHGDT-IPRGIEYIQHNGVVQESYYRYV---AREQSCR-RPNAQRFGIS-  114 (222)
T ss_dssp             HHHHHHHHHHCCCCCBCHHHHHHHTC-SSTTBCCC-HHHHHHHHHHHCEEBGGGSCCC---SSCCCCC-CCSSCEECCS-
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHhCcC-CCCCCCCC-HHHHHHHHHHcCCCchhhCCCc---ccCCCcc-CCcCcceeec-
Confidence            58999999999999999999999998 89999999 9999999888899999999999   7888998 5566778999 


Q ss_pred             ceeEeC--ChHHHHHHHHh-CCCEEEEEEC---ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccC
Q psy274           81 DFLYFN--GSETMKKILYK-YGPLSVGLNG---HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSW  154 (187)
Q Consensus        81 ~~~~i~--~~~~ik~~l~~-~gPV~v~~~~---~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW  154 (187)
                      +|..+.  ++++||++|++ +|||+++|.+   ++|+.|++|++..  +.+....++|||+|||||+++|++||||||||
T Consensus       115 ~~~~v~~~~~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~~--~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSW  192 (222)
T 3f5v_A          115 NYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ--RDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSW  192 (222)
T ss_dssp             EEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBC--CCCSSSCEEEEEEEEEEEEETTEEEEEEECSB
T ss_pred             cEEEeCCCCHHHHHHHHHhcCCCEEEEEEeccchhhhccCCCceec--CCCCCCccCcEEEEEEEeccCCCEEEEEEcCC
Confidence            999995  89999999999 9999999987   3799999998876  45666679999999999999999999999999


Q ss_pred             CCCCCCCcEEEEEecCCeecccceeeEEEE
Q psy274          155 GPIGPDEGFFKIERGNNACGIETIAGYATI  184 (187)
Q Consensus       155 G~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~  184 (187)
                      |++||++|||||+|+.|.|||++++++|++
T Consensus       193 G~~WGe~Gy~~i~r~~n~cgi~~~~~~p~~  222 (222)
T 3f5v_A          193 DTNWGDNGYGYFAANIDLMMIEEYPYVVIL  222 (222)
T ss_dssp             CTTSTBTTEEEEECSSCGGGTTTSCEEEEC
T ss_pred             CCCcccCCEEEEEcCCCeecCCCceeEEeC
Confidence            999999999999999999999999999974

>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*

Probab=100.00  E-value=5.8e-53  Score=338.35  Aligned_cols=178  Identities=33%  Similarity=0.652  Sum_probs=162.3

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++. |+++|++|||.   +..+.|........++++
T Consensus        34 ~lE~~~~i~~g~~~~LS~q~lvdC~~~~~gC~GG~-~~~a~~y~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i~  109 (246)
T 2b1m_A           34 AIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGW-HYQSFEWVVKHGGIASEADYPYK---ARDGKCKANEIQDKVTID  109 (246)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSBTTTBCC-HHHHHHHHHHTTCBCBTTTSCCC---SSCCCCCGGGCCCCBCCS
T ss_pred             HHHHHHHHHcCCCcccCHHHHHhhcCCCCCCCCCC-HHHHHHHHHHhCCcCcccccccc---CCCCcCcCCCCCCceeEc
Confidence            48999999999999999999999986688999999 99999997765 99999999999   778899876556677888


Q ss_pred             cce---eEeC--ChHHHHHHHHh---CCCEEEEEECccccccCCceeeCCCCCCCCCc-ccEEEEEEEEeecCCccEEEE
Q psy274           80 KDF---LYFN--GSETMKKILYK---YGPLSVGLNGHLIHFYNGTPIKKNDEICSPNA-IGHAVLLVGYGKQDDIPYWLA  150 (187)
Q Consensus        80 ~~~---~~i~--~~~~ik~~l~~---~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~-~~Hav~iVGyg~~~g~~ywiv  150 (187)
                       +|   ..++  ++++||++|++   +|||+++|.+++|+.|++|||..  +.|+... ++|||+|||||+++|++||||
T Consensus       110 -~y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Giy~~--~~c~~~~~~~HaV~iVGyg~~~g~~yWiv  186 (246)
T 2b1m_A          110 -NYGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGIYDG--GNCSSPYGINHFVLIVGYGSEDGVDYWIA  186 (246)
T ss_dssp             -EEEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSEECC--TTCCSSCCCCEEEEEEEEEEETTEEEEEE
T ss_pred             -CcceeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhcccceeecC--CCCCCCCcCceEEEEEEEeccCCceEEEE
Confidence             88   7776  78899999998   69999999998899999999987  5787754 899999999999999999999


Q ss_pred             EccCCCCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          151 RNSWGPIGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       151 kNSWG~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      |||||++||++|||||+|+.    |.|||++.+++|+++
T Consensus       187 kNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~~~  225 (246)
T 2b1m_A          187 KNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE  225 (246)
T ss_dssp             ECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEECC
T ss_pred             EeCCCCcccCCcEEEEEcCCCCCCccccccceeeEEEec
Confidence            99999999999999999997    899999999999874

>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1

Probab=100.00  E-value=5.3e-53  Score=348.56  Aligned_cols=175  Identities=22%  Similarity=0.409  Sum_probs=161.7

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeeecc
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGK   80 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~   80 (187)
                      +||++++|++++.++||+|+|+||+. ..||+||+ +..||+|+++.|+++|++|||.   +..+.|. ......++++ 
T Consensus       122 alE~~~~i~~g~~~~LSeq~lvdC~~-~~GC~GG~-~~~a~~yi~~~Gi~~e~~yPY~---~~~~~C~-~~~~~~~~i~-  194 (312)
T 1xkg_A          122 ATESAYLAYRDQSLDLAEQELVDCAS-QHGCHGDT-IPRGIEYIQHNGVVQESYYRYV---AREQSCR-RPNAQRFGIS-  194 (312)
T ss_dssp             HHHHHHHHHHCCCCCBCHHHHHHHTC-SSTTBCCC-HHHHHHHHHHHCEEBGGGSCCC---SSCCCCC-CCSSCEECCS-
T ss_pred             HHHHHHHHHhCCCCCcCHHHHHhccC-CCCCCCCC-HHHHHHHHHHcCCCccccCCcc---CCCCCCC-CCCCceEEEe-
Confidence            58999999999999999999999992 28999999 9999999877999999999999   7888998 5555678899 


Q ss_pred             ceeEeC--ChHHHHHHHHh-CCCEEEEEEC-c--cccccCCceeeCCCCCCC-CCcccEEEEEEEEeecCCccEEEEEcc
Q psy274           81 DFLYFN--GSETMKKILYK-YGPLSVGLNG-H--LIHFYNGTPIKKNDEICS-PNAIGHAVLLVGYGKQDDIPYWLARNS  153 (187)
Q Consensus        81 ~~~~i~--~~~~ik~~l~~-~gPV~v~~~~-~--~f~~y~~giy~~~~~~~~-~~~~~Hav~iVGyg~~~g~~ywivkNS  153 (187)
                      +|..++  ++++||++|++ +|||+++|.+ +  +|+.|++|||..  +.|+ ... +|||+|||||+++|++|||||||
T Consensus       195 ~y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~~Y~~GVy~~--~~c~~~~~-~HaV~iVGyg~~~g~~yWivkNS  271 (312)
T 1xkg_A          195 NYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ--RDNGYQPN-YHAVNIVGYSNAQGVDYWIVRNS  271 (312)
T ss_dssp             EEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBC--CCCSSCCE-EEEEEEEEEEEETTEEEEEEECS
T ss_pred             eEEEeCCCCHHHHHHHHHhcCCCEEEEEEecccccccccCCcEEcC--CCCCCCcC-ceEEEEEEEeccCCceEEEEEeC
Confidence            999997  89999999999 9999999999 6  899999999988  6787 556 99999999999999999999999


Q ss_pred             CCCCCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274          154 WGPIGPDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       154 WG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      ||++||++|||||+|+.|.|||++.+++|+++
T Consensus       272 WG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~~  303 (312)
T 1xkg_A          272 WDTNWGDNGYGYFAANIDLMMIEEYPYVVILG  303 (312)
T ss_dssp             BCTTSTBTTEEEEECSSCGGGTTTCCEEEECT
T ss_pred             CCCcccCCcEEEEEcCCCcccccceeEEeecc
Confidence            99999999999999999999999999999864

>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A

Probab=100.00  E-value=2.4e-53  Score=351.29  Aligned_cols=177  Identities=33%  Similarity=0.691  Sum_probs=163.2

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHH-hCcccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|++ +.|+++|++|||.   +..+.|...+.....++.
T Consensus       132 alE~~~~i~~g~~~~LSeq~lvdC~~~~~gC~GG~-~~~a~~yi~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i~  207 (314)
T 1by8_A          132 ALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGY-MTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCR  207 (314)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHTTCTTSCGGGCCC-SHHHHHHHHHTTCBCBTTTSCCC---SSCCCCCCCGGGCCBCCS
T ss_pred             HHHHHHHHhcCCCcccCHHHHHHhcCCCCCCcCCC-HHHHHHHHHHcCCcCcHhhCCCC---CCCCCcCCCCccceeEEC
Confidence            58999999999999999999999997689999999 999999976 7899999999999   788899876655678889


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|+++|||+++|++  ++|+.|++|||..  +.|+...++|||+|||||+++|++|||||||||
T Consensus       208 -~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG  284 (314)
T 1by8_A          208 -GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWG  284 (314)
T ss_dssp             -CEEECCSSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEECBCC--TTCCSSCCCEEEEEEEEEEETTEEEEEEECSBT
T ss_pred             -cEEEecCCCHHHHHHHHHHcCCEEEEEEeChHHhhhccCceecC--CCCCCCCCCeEEEEEEEeccCCceEEEEEcCCC
Confidence             999997  899999999999999999999  4899999999988  568876789999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+|+. |.|||++.+++|++
T Consensus       285 ~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  314 (314)
T 1by8_A          285 ENWGNKGYILMARNKNNACGIANLASFPKM  314 (314)
T ss_dssp             TTSTBTTEEEECCSSSCGGGTTSSCEEECC
T ss_pred             CCcCcCCEEEEEcCCCCcCCccCeeEEeeC
Confidence            999999999999995 99999999999974

>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1

Probab=100.00  E-value=1.3e-52  Score=330.26  Aligned_cols=173  Identities=27%  Similarity=0.588  Sum_probs=157.8

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHh-CcccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++ .|+++|++|||.   +..+.|.... +..+++.
T Consensus        33 ~~e~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~-~~~~~i~  107 (215)
T 1iwd_A           33 AVESINKIRTGQLISLSEQELVDCDTASHGCNGGW-MNNAFQYIITNGGIDTQQNYPYS---AVQGSCKPYR-LRVVSIN  107 (215)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCTTC-CCCBCCC
T ss_pred             HHHHHHHHhcCCccccChhHeEECcCCCCCCCCCC-HHHHHHHHHHhCCcccccccCcc---CCCCCCCCCC-CceEEeC
Confidence            58999999999999999999999997688999999 9999999765 599999999999   7788998654 3567888


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|++ |||+++|.+ + +|+.|++|||..   +|+. .++|||+|||||+++|++|||||||||
T Consensus       108 -~~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~---~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG  181 (215)
T 1iwd_A          108 -GFQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTG---PCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWG  181 (215)
T ss_dssp             -EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC---CCCC-CCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             -cEEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceECC---CCCC-cCCEEEEEEEEeccCCccEEEEEeCCC
Confidence             998887  78899999987 999999999 5 799999999987   5775 579999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+|+.    |.|||++++++|++
T Consensus       182 ~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  214 (215)
T 1iwd_A          182 QNWGNQGYIWMERNVASSAGLCGIAQLPSYPTK  214 (215)
T ss_dssp             TTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             CCcCCCcEEEEEcCCCCCCCCCCccccceeeee
Confidence            999999999999986    89999999999985

>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1

Probab=100.00  E-value=9.8e-53  Score=332.21  Aligned_cols=175  Identities=28%  Similarity=0.601  Sum_probs=159.6

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHh-CcccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++ .|+++|++|||.   +..+.|........++++
T Consensus        35 ~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~y~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~i~  110 (221)
T 1cqd_A           35 AVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGW-MNPAFQFIVNNGGINSEETYPYR---GQDGICNSTVNAPVVSID  110 (221)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHTSBCBTTTSCCC---SSCCCCCSSSCCCSBCCS
T ss_pred             HHHHHHHHhcCCeeeeccceeEECCCCCCCCCCCC-HHHHHHHHHHhCCccccccCCcc---CCCCCcCCCCCCceEEec
Confidence            58999999999999999999999997789999999 9999999765 599999999999   788899876666778899


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|++ |||+++|.+  ++|+.|++|||..   +|+. .++|||+|||||+++|++|||||||||
T Consensus       111 -~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~---~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG  184 (221)
T 1cqd_A          111 -SYENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTG---SCNI-SANHALTVVGYGTENDKDFWIVKNSWG  184 (221)
T ss_dssp             -EEEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECC---CCCC-CCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             -cEEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCccccC---CCCC-cCCeEEEEEEEcccCCCcEEEEEeCCC
Confidence             999887  78999999986 999999999  4899999999987   5776 589999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      ++||++|||||+|+.    |.|||++.+++|+++
T Consensus       185 ~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~~  218 (221)
T 1cqd_A          185 KNWGESGYIRAERNIENPDGKCGITRFASYPVKK  218 (221)
T ss_dssp             TTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             CCcccCCEEEEEcCCCCCCcccceeeeeeEEEec
Confidence            999999999999983    889999999999864

>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*

Probab=100.00  E-value=9.3e-53  Score=331.29  Aligned_cols=175  Identities=30%  Similarity=0.572  Sum_probs=159.1

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCC-cceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++.|+++|++|||.   +..+.|+.... ...+++.
T Consensus        33 ~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~yi~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~~i~  108 (216)
T 1ppo_A           33 TVEGINKIRTGKLVELSEQELVDCERRSHGCKGGY-PPYALEYVAKNGIHLRSKYPYK---AKQGTCRAKQVGGPIVKTS  108 (216)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCC-HHHHHHHHHHHCBCBTTTSCCC---SSCCCCCGGGCCSCCBCCC
T ss_pred             HHHHHHHHccCCceecCHHHHHhccCCCCCCCCCC-HHHHHHHHHHhCcCccccCCcc---CCCCCcCCCCCCCceEEec
Confidence            58999999999999999999999996688999999 9999999888899999999999   77888986543 4667888


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|++ |||+++|.+  ++|+.|++|||..   +|+.. .+|||+|||||+++|.+|||||||||
T Consensus       109 -~y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~---~~~~~-~~HaV~iVGyg~~~g~~ywivkNSWG  182 (216)
T 1ppo_A          109 -GVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG---PCGTK-VDHAVTAVGYGKSGGKGYILIKNSWG  182 (216)
T ss_dssp             -EEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECC---SCCSC-CCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             -cEEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceECC---CCCCC-CCEEEEEEEeeccCCccEEEEEeCCC
Confidence             998887  78999999998 999999999  4899999999976   67764 79999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      ++||++|||||+|+.    |.|||++++++|+++
T Consensus       183 ~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p~~~  216 (216)
T 1ppo_A          183 TAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN  216 (216)
T ss_dssp             SSSTBTTEEEEECCCSSSSCGGGTTSCCEEEECC
T ss_pred             CCcccCcEEEEEcCCCCCCCcCccccceeeEeeC
Confidence            999999999999985    899999999999863

>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0

Probab=100.00  E-value=1.4e-52  Score=331.60  Aligned_cols=175  Identities=29%  Similarity=0.595  Sum_probs=154.6

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|++++ |+++|++|||.   +..+.|...... .+++.
T Consensus        33 ~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~-~~~i~  107 (222)
T 3u8e_A           33 AIEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGD-ADDAFRWVITNGGIASDANYPYT---GVDGTCDLNKPI-AARID  107 (222)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCC------CCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCCCSCC-CBCCC
T ss_pred             HHHHHHHHHcCCCcccCHHHHHhccCcccccCCCC-HHHHHHHHHHcCCccchhcCCCc---ccCCccccCCCC-eEEEc
Confidence            58999999999999999999999998789999999 99999997666 99999999999   888899876554 78888


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEEC-c-cccccCC-ceeeCCCCCCCC--CcccEEEEEEEEeecC-CccEEEEEc
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNG-H-LIHFYNG-TPIKKNDEICSP--NAIGHAVLLVGYGKQD-DIPYWLARN  152 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~-giy~~~~~~~~~--~~~~Hav~iVGyg~~~-g~~ywivkN  152 (187)
                       +|..++ ++++||++|.+ |||+++|++ + +|+.|++ |||..  ++|+.  ..++|||+|||||+++ +++||||||
T Consensus       108 -~~~~v~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~~Giy~~--~~~~~~~~~~~HaV~iVGyg~~~~g~~yWivkN  183 (222)
T 3u8e_A          108 -GYTNVPNSSSALLDAVAK-QPVSVNIYTSSTSFQLYTGPGIFAG--SSCSDDPATVDHTVLIVGYGSNGTNADYWIVKN  183 (222)
T ss_dssp             -EEEECCSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCCSSCBCC--TTCCCCGGGCCEEEEEEEEEESSTTCEEEEEEC
T ss_pred             -cEEEeCCcHHHHHHHHhC-CCEEEEEEecChhhhcEeCCceECC--CcccCCCCcCCEEEEEEEEeecCCCCcEEEEEC
Confidence             999996 89999999965 999999999 5 8999999 99987  67765  3579999999999988 999999999


Q ss_pred             cCCCCCCCCcEEEEEecCC----eecccceeeEEEE
Q psy274          153 SWGPIGPDEGFFKIERGNN----ACGIETIAGYATI  184 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~n----~cgi~~~~~~~~~  184 (187)
                      |||++||++|||||+|+.|    .|||++.+++|++
T Consensus       184 SWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~  219 (222)
T 3u8e_A          184 SWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK  219 (222)
T ss_dssp             SBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred             CCCCCcccCCEEEEEcCCCCCCCcCCccccceEEEE
Confidence            9999999999999999987    9999999999985

>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}

Probab=100.00  E-value=1e-52  Score=347.66  Aligned_cols=176  Identities=32%  Similarity=0.688  Sum_probs=162.0

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhc-C--CCCCCCCCccchhhHHHHH-hCcccccccccccCCCCCcccccCCCCccee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECA-K--QCSGCGGCDGLEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKL   76 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~-~--~~~gC~gG~~~~~a~~~~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~   76 (187)
                      +||++++|++++.++||+|+|+||+ .  .+.||+||+ +..||+|++ +.|+++|++|||.   +..+.|...+.....
T Consensus       131 alE~~~~i~~g~~~~LSeq~lvdC~~~~~~~~gC~GG~-~~~a~~yi~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~  206 (315)
T 2c0y_A          131 ALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGF-MTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYDSKYRAA  206 (315)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCBC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEE
T ss_pred             HHHHHHHHHhCCCcCcCHHHHHhhcccccCCCCCCCCC-HHHHHHHHHHhCCcCchhcCCCc---cCCCCcccCCccccc
Confidence            5899999999999999999999998 3  289999999 999999976 6899999999999   888899876656678


Q ss_pred             eeccceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEc
Q psy274           77 FTGKDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARN  152 (187)
Q Consensus        77 ~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN  152 (187)
                      ++. +|..++  ++++||++|+++|||+++|++  ++|+.|++|||..  +.|+. .++|||+|||||+++|++||||||
T Consensus       207 ~i~-~~~~v~~~~~~~i~~al~~~GPV~v~i~~~~~~f~~Y~~Gvy~~--~~c~~-~~~HaV~iVGyg~~~g~~yWivkN  282 (315)
T 2c0y_A          207 TCS-KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYE--PSCTQ-NVNHGVLVVGYGDLNGKEYWLVKN  282 (315)
T ss_dssp             CCC-EEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTEEEEEECC--TTCCS-CCCEEEEEEEEEEETTEEEEEEEC
T ss_pred             ccC-CeEEeCCCCHHHHHHHHHHcCCEEEEEecCchhhhccCCCcccC--CCCCC-cCCEEEEEEEEeecCCCcEEEEEc
Confidence            889 999987  899999999999999999999  3899999999988  56887 789999999999999999999999


Q ss_pred             cCCCCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          153 SWGPIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      |||++||++|||||+|+. |.|||++.+++|++
T Consensus       283 SWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  315 (315)
T 2c0y_A          283 SWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  315 (315)
T ss_dssp             SBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCCCcCCCcEEEEEcCCCCccCcCceeEEeeC
Confidence            999999999999999995 99999999999974

>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*

Probab=100.00  E-value=1.8e-52  Score=330.12  Aligned_cols=175  Identities=29%  Similarity=0.573  Sum_probs=159.0

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCC-cceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|++++|+++|++|||.   +..+.|..... ...+++.
T Consensus        33 ~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~~i~  108 (218)
T 1yal_A           33 TVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGY-QTTSLQYVANNGVHTSKVYPYQ---AKQYKCRATDKPGPKVKIT  108 (218)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHCBCBTTTSCCC---SSCCCCCGGGCCSCCBCCS
T ss_pred             HHHHHHHHhcCCccccCHHHHHHhcCCCCCCCCCC-HHHHHHHHHHcCCCcccccccc---CCCCCcccCcCCCceEEEe
Confidence            48999999999999999999999996589999999 9999999888899999999999   77888986533 4567888


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|++ |||+++|.+  ++|+.|++|||..   +|+.. .+|||+|||||+++|++|||||||||
T Consensus       109 -~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~---~~~~~-~~HaV~iVGyg~~~g~~yWivkNSWG  182 (218)
T 1yal_A          109 -GYKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDG---PCGTK-LDHAVTAVGYGTSDGKNYIIIKNSWG  182 (218)
T ss_dssp             -EEEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECC---SCCSC-CCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             -eEEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCceECC---CCCCC-CCEEEEEEEeeccCCccEEEEEeCCC
Confidence             999887  78899999987 999999999  4899999999976   67764 79999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      ++||++|||||+|+.    |.|||++++++|+++
T Consensus       183 ~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  216 (218)
T 1yal_A          183 PNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKG  216 (218)
T ss_dssp             TTSTBTTEEEEECCCSBSCCGGGTTSSCEEEECC
T ss_pred             CCcccCcEEEEECCCCCCCCccccccceeeEEEe
Confidence            999999999999985    899999999999875

>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*

Probab=100.00  E-value=1.3e-52  Score=347.21  Aligned_cols=177  Identities=34%  Similarity=0.684  Sum_probs=162.9

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHH-HhCcccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYT-HQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      +||++++|++++.++||+|+|+||+..  +.||+||+ +..||+|+ ++.|+++|++|||.   +..+.|...+....++
T Consensus       129 alE~~~~i~~g~~~~LSeq~lvdC~~~~g~~gC~GG~-~~~a~~yi~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~  204 (316)
T 1cs8_A          129 ALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGL-MDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNPKYSVAN  204 (316)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEEC
T ss_pred             HHHHHHHHHcCCCcCcCHHHHHHhccccCCCCCCCCC-HHHHHHHHHHhCCcCchhccCCC---CCCCCcCCCCccceeE
Confidence            589999999999999999999999863  78999999 99999997 48999999999999   7888998766667788


Q ss_pred             eccceeEeC-ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEe---ec-CCccEEEE
Q psy274           78 TGKDFLYFN-GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYG---KQ-DDIPYWLA  150 (187)
Q Consensus        78 i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg---~~-~g~~ywiv  150 (187)
                      +. +|..++ ++++||++|+++|||+++|.+ . +|+.|++|||..  +.|+...++|||+|||||   ++ +|++||||
T Consensus       205 i~-~~~~v~~~~~~ik~~l~~~GPV~v~i~~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGygd~~~~~~g~~yWiv  281 (316)
T 1cs8_A          205 DA-GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE--PDCSSEDMDHGVLVVGYGFESTESDNNKYWLV  281 (316)
T ss_dssp             CC-CEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECC--TTCCSSCCCEEEEEEEEEEECCSSCCEEEEEE
T ss_pred             ec-cEEEeCCCHHHHHHHHHhcCCEEEEEecCChhhccccCceECC--CCCCCCCCCEEEEEEEecCCcccCCCCcEEEE
Confidence            99 999998 899999999999999999999 4 899999999987  568876789999999999   77 79999999


Q ss_pred             EccCCCCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          151 RNSWGPIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       151 kNSWG~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      |||||++||++|||||+|+. |.|||++.+++|++
T Consensus       282 kNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~~p~~  316 (316)
T 1cs8_A          282 KNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             ECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             EcCCCCCcccCCEEEEECCCCCccCccceeeEeeC
Confidence            99999999999999999997 89999999999974

>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A

Probab=100.00  E-value=2.6e-52  Score=333.67  Aligned_cols=173  Identities=30%  Similarity=0.592  Sum_probs=158.5

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHh-CcccccccccccCCCCCccc-ccCCCCcceeee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFK-CAYDKSKVKLFT   78 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~i   78 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++ .|+++|++|||.   +..+. |........+++
T Consensus        50 alE~~~~i~~~~~~~lSeq~l~dC~~~~~gC~GG~-~~~a~~yi~~~~Gi~~e~~yPY~---~~~~~~C~~~~~~~~~~i  125 (241)
T 2oul_A           50 SVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGL-INNAFEDMIELGGICPDGDYPYV---SDAPNLCNIDRCTEKYGI  125 (241)
T ss_dssp             HHHHHHHHHHCCCCCBCHHHHHHHCTTSCTTBCBC-HHHHHHHHHHTTSBCBTTSSCCC---TTSCCCCCTTSSSCCBCC
T ss_pred             HHHHHHHHhcCCCcccCHHHHHhhcCCCCCCCCCC-HHHHHHHHHHhCCcCccccCCCc---CCCCCcCCCCCCccceee
Confidence            58999999999999999999999997789999999 9999999765 799999999999   77777 987666677889


Q ss_pred             ccceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecC----------Cc
Q psy274           79 GKDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQD----------DI  145 (187)
Q Consensus        79 ~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~----------g~  145 (187)
                      + +|..++  ++++||++|   |||+++|.+ ++|+.|++|||..   .|+.. ++|||+|||||+++          +.
T Consensus       126 ~-~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~---~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~  197 (241)
T 2oul_A          126 K-NYLSVPDNKLKEALRFL---GPISISVAVSDDFAFYKEGIFDG---ECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKH  197 (241)
T ss_dssp             S-EEEECCTTCHHHHHHHT---CCEEEEECBCHHHHTCCSSBCCS---CBCSS-CCEEEEEEEEEEEEEECTTTCSEEEE
T ss_pred             e-eEEEeCCCCHHHHHHhh---CCEEEEEecCcchhhcCCcEEcC---cCCCC-CCEEEEEEEeccccccccccccCCCC
Confidence            9 998887  788999999   999999999 7999999999986   68765 89999999999875          78


Q ss_pred             cEEEEEccCCCCCCCCcEEEEEecCCe----ecccceeeEEEEE
Q psy274          146 PYWLARNSWGPIGPDEGFFKIERGNNA----CGIETIAGYATID  185 (187)
Q Consensus       146 ~ywivkNSWG~~WG~~Gy~~i~~~~n~----cgi~~~~~~~~~~  185 (187)
                      +|||||||||++||++|||||+|+.|.    |||++++++|++|
T Consensus       198 ~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~~  241 (241)
T 2oul_A          198 YYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE  241 (241)
T ss_dssp             EEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEECC
T ss_pred             CEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEeeC
Confidence            999999999999999999999999877    9999999999875

>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A

Probab=100.00  E-value=2.1e-52  Score=330.12  Aligned_cols=176  Identities=29%  Similarity=0.624  Sum_probs=157.5

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHh-CcccccccccccCCCCCcccccCCCC-ccee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKS-KVKL   76 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~   76 (187)
                      +||++++|++++.++||+|+|+||+..  +.||+||+ +..||+|+++ .|+++|++|||.   +..+.|..... ...+
T Consensus        33 ~lE~~~~i~~~~~~~LS~q~l~dC~~~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~  108 (220)
T 3p5u_A           33 AVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGF-MTDGFQFIINNGGINTEANYPYT---AEEGQCNLDLQQEKYV  108 (220)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCCCSSCCTTBCCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCHHHHTCCSB
T ss_pred             HHHHHHHHHcCCCCCcCHhHcEECCCCCCCCCCCCCC-HHHHHHHHHHhCCcCcccccccc---cCCCCcCcCCCCCceE
Confidence            589999999999999999999999987  78999999 9999999655 599999999999   77888975432 3357


Q ss_pred             eeccceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEc
Q psy274           77 FTGKDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARN  152 (187)
Q Consensus        77 ~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN  152 (187)
                      ++. +|..++  +++.||++| .+|||+++|.+  ++|+.|++|||..   +|+.. .+|||+|||||+++|++||||||
T Consensus       109 ~i~-~~~~v~~~~~~~l~~~l-~~GPV~v~~~~~~~~f~~Y~~Giy~~---~~~~~-~~HaV~iVGyg~~~g~~yWivkN  182 (220)
T 3p5u_A          109 SID-TYENVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFTG---PCGTA-VDHAVTIVGYGTEGGIDYWIVKN  182 (220)
T ss_dssp             CCC-EEEECCTTCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEECC---CCCCS-CCEEEEEEEEEEETTEEEEEEEC
T ss_pred             EEc-cEEEeCCCcHHHHHHHH-hcCCEEEEEecCchhhccccCceECC---CCCCc-cceEEEEEEEecCCCceEEEEEC
Confidence            888 999886  788899988 57999999999  4899999999976   67664 79999999999999999999999


Q ss_pred             cCCCCCCCCcEEEEEecCC---eecccceeeEEEEEe
Q psy274          153 SWGPIGPDEGFFKIERGNN---ACGIETIAGYATIDV  186 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~n---~cgi~~~~~~~~~~~  186 (187)
                      |||++||++|||||+|+.|   .|||++.+++|++++
T Consensus       183 SWG~~WGe~Gy~~i~r~~~~~~~Cgi~~~~~~p~~~~  219 (220)
T 3p5u_A          183 SWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPVKYY  219 (220)
T ss_dssp             SBCTTSTBTTEEEEECCCCTTCGGGTTSSCEEEECSC
T ss_pred             CCCCCcccCCEEEEECCCCCCCccCcccccceEEEec
Confidence            9999999999999999986   999999999999764

>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*

Probab=100.00  E-value=6.2e-52  Score=344.05  Aligned_cols=180  Identities=26%  Similarity=0.464  Sum_probs=153.3

Q ss_pred             CchhhHHHHhCC-CccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccccccccccCCC--------CCccccc--
Q psy274            1 MLEGQYAIKTGK-LVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN--------GEKFKCA--   68 (187)
Q Consensus         1 a~E~~~~i~~~~-~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~--------~~~~~C~--   68 (187)
                      |||++++|++++ .++||+|+|+||+.. +.||+||+ +..||+|+++.|+++|++|||....        +..+.|.  
T Consensus       108 alE~~~~i~~~~~~~~LSeQ~LvdC~~~~~~GC~GG~-~~~A~~yi~~~Gi~~e~~yPY~~~~c~~~~~~~~~~~~C~~~  186 (325)
T 3hhi_A          108 AMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGD-PDRAWAYFSSTGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQF  186 (325)
T ss_dssp             HHHHHHHHTSSCSSCCBCHHHHHHHCGGGBCTTBCBC-HHHHHHHHHHTCBCBTTTSCCSSCCCBSSSCCTTCCCBGGGC
T ss_pred             HHHHHHHHHhCCCccccCHHHHHHhccCCCCCCCCCC-HHHHHHHHHHhCCCcccccCCccccccccccccccCCCCCCc
Confidence            589999999998 999999999999875 78999999 9999999888899999999998221        1124555  


Q ss_pred             --------CCC------CcceeeeccceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEE
Q psy274           69 --------YDK------SKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHA  133 (187)
Q Consensus        69 --------~~~------~~~~~~i~~~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Ha  133 (187)
                              ..+      ......+. .|. +.++++||++|+++|||+++|++ ++|+.|++|||..   ++....++||
T Consensus       187 ~~~~~~c~~~c~~~~~~~~~~~~~~-~y~-v~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~---~~~~~~~~Ha  261 (325)
T 3hhi_A          187 NFDTPKCDYTCDDPTIPVVNYRSWT-SYA-LQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHH---VSGQYLGGHA  261 (325)
T ss_dssp             CCCCCCCCSSCSSTTSCCCCBCEEE-EEE-ECSHHHHHHHHHHHCCEEEEEEEEHHHHTCCSSEECC---CSCCEEEEEE
T ss_pred             ccCCcchhhcccccccccceEEeec-ceE-eCCHHHHHHHHHHCCCEEEEEEeccccccccCceecC---CCCCCCCCEE
Confidence                    110      01223455 666 46899999999999999999999 8999999999987   4555567999


Q ss_pred             EEEEEEeecCCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEEEe
Q psy274          134 VLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATIDV  186 (187)
Q Consensus       134 v~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~~  186 (187)
                      |+|||||+++|.+|||||||||++||++|||||+|+.|.|||++.+++++..+
T Consensus       262 V~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~g~p~~  314 (325)
T 3hhi_A          262 VRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGIPLA  314 (325)
T ss_dssp             EEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEEEEEC-
T ss_pred             EEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEEeecCC
Confidence            99999999999999999999999999999999999999999999999998764

>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*

Probab=100.00  E-value=4e-52  Score=332.99  Aligned_cols=173  Identities=29%  Similarity=0.576  Sum_probs=157.6

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHh-CcccccccccccCCCCCccc-ccCCCCcceeee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFK-CAYDKSKVKLFT   78 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~i   78 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++ .|+++|++|||.   +..+. |........+++
T Consensus        52 alE~~~~i~~~~~~~lSeq~lvdC~~~~~gC~GG~-~~~a~~y~~~~~Gi~~e~~yPY~---~~~~~~C~~~~~~~~~~i  127 (243)
T 3bwk_A           52 SVESQYAIRKKALFLFSEQELVDCSVKNNGCYGGY-ITNAFDDMIDLGGLCSQDDYPYV---SNLPETCNLKRCNERYTI  127 (243)
T ss_dssp             HHHHHHHHHHCSCCCBCHHHHHHHCTTSCGGGCCC-HHHHHHHHHHTTSBCBTTTSCCC---TTSCCCCCGGGCSSCBCC
T ss_pred             HHHHHHHHhcCCCcccCHHHHHHhcCCCCCCCCCC-HHHHHHHHHHhCCcccccccCCc---CCCCCcCCCCCCccceee
Confidence            58999999999999999999999997788999999 9999999765 799999999999   77777 987655667889


Q ss_pred             ccceeEeC--ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecC----------Cc
Q psy274           79 GKDFLYFN--GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQD----------DI  145 (187)
Q Consensus        79 ~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~----------g~  145 (187)
                      + +|..++  ++++||++|   |||+++|.+ ++|+.|++|||..   .|+.. ++|||+|||||+++          |.
T Consensus       128 ~-~~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~---~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~  199 (243)
T 3bwk_A          128 K-SYVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGGFYDG---ECGAA-PNHAVILVGYGMKDIYNEDTGRMEKF  199 (243)
T ss_dssp             C-EEEECCTTCHHHHHHHT---CCEEEEECCCHHHHTCCSSSCCC---CCCSS-CCEEEEEEEEEEEEEECTTTCSEEEE
T ss_pred             e-eEEEeCCCCHHHHHHhh---CCEEEEEecChhHHhcCCceecC---CCCCc-CCeEEEEEEecCccccccccccCCCC
Confidence            9 998887  788999999   999999999 7999999999986   68765 89999999999875          78


Q ss_pred             cEEEEEccCCCCCCCCcEEEEEecCCe----ecccceeeEEEEE
Q psy274          146 PYWLARNSWGPIGPDEGFFKIERGNNA----CGIETIAGYATID  185 (187)
Q Consensus       146 ~ywivkNSWG~~WG~~Gy~~i~~~~n~----cgi~~~~~~~~~~  185 (187)
                      +|||||||||++||++|||||+|+.|.    |||++++++|++|
T Consensus       200 ~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~~  243 (243)
T 3bwk_A          200 YYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE  243 (243)
T ss_dssp             EEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEEC-
T ss_pred             CEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEecC
Confidence            999999999999999999999999877    9999999999975

>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...

Probab=100.00  E-value=1.4e-51  Score=323.68  Aligned_cols=170  Identities=28%  Similarity=0.529  Sum_probs=155.4

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCC-Ccceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDK-SKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|++++|+++|++|||.   +..+.|.... ....++++
T Consensus        33 ~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~yi~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~~i~  108 (212)
T 2cio_A           33 TIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGY-PWSALQLVAQYGIHYRNTYPYE---GVQRYCRSREKGPYAAKTD  108 (212)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHTCBCBTTTSCCC---SSCCCCCTTTTCSCSBCCS
T ss_pred             HHHHHHHHhcCCccccCHHHHHHhCCCCCCCCCCC-HHHHHHHHHHhCcCcccccCCc---CCCCCcCCCCCCCceEEEe
Confidence            58999999999999999999999996688999999 9999999888899999999999   7788998765 35668888


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|++ |||+++|++ + +|+.|++|||..   +|+. .++|||+|||||+    +|||||||||
T Consensus       109 -~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~---~~~~-~~~HaV~iVGyg~----~yWivkNSWG  178 (212)
T 2cio_A          109 -GVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVG---PCGN-KVDHAVAAVGYGP----NYILIKNSWG  178 (212)
T ss_dssp             -EEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC---CCCS-CCCEEEEEEEEET----TEEEEECSBC
T ss_pred             -eEEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceecC---CCCC-CCCEEEEEEEecC----CeEEEEeCCC
Confidence             998887  78899999987 999999999 5 899999999986   5776 5799999999996    8999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+|+.    |.|||++++++|++
T Consensus       179 ~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~  211 (212)
T 2cio_A          179 TGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  211 (212)
T ss_dssp             TTSTBTTEEEEECSSSCTTCGGGTTSCCEEEEC
T ss_pred             CCcccCcEEEEEcCCCCCCCccCcccceeEEEe
Confidence            999999999999986    89999999999986

>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0

Probab=100.00  E-value=1e-51  Score=326.88  Aligned_cols=174  Identities=28%  Similarity=0.588  Sum_probs=159.4

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHh-CcccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQ-AGLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      +||+++++++++.++||+|+|+||+..  +.||+||+ +..|++|+++ .|+++|++|||.   +..+.|.........+
T Consensus        39 ~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~-~~~a~~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~  114 (224)
T 3f75_A           39 ALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGE-MNDAFQYVLDSGGICSEDAYPYL---ARDEECRAQSCEKVVK  114 (224)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCGGGSCCCBC
T ss_pred             HHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCC-HHHHHHHHHHhCCccccccCCCc---CCCCCCCcCCCCceEE
Confidence            589999999999999999999999876  89999999 9999999765 899999999999   7888998776667778


Q ss_pred             eccceeEeC--ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEeec--CCccEEEEE
Q psy274           78 TGKDFLYFN--GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ--DDIPYWLAR  151 (187)
Q Consensus        78 i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~--~g~~ywivk  151 (187)
                      +. +|..+.  ++++||++|+ +|||+++|.+ . +|+.|++|||..   .|+. .++|||+|||||++  ++++|||||
T Consensus       115 i~-~~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~~---~~~~-~~~Hav~iVGyg~~~~~g~~ywivk  188 (224)
T 3f75_A          115 IL-GFKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFDA---SCGT-DLDHGVLLVGYGTDKESKKDFWIMK  188 (224)
T ss_dssp             CS-EEEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEECC---CCCC-CCCEEEEEEEEEEETTTTEEEEEEE
T ss_pred             ec-cEEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceECC---CCCC-ccCeEEEEEEEecccCCCCCEEEEE
Confidence            88 999886  8899999999 7999999999 4 899999999975   6754 68999999999987  899999999


Q ss_pred             ccCCCCCCCCcEEEEEecC---CeecccceeeEEEE
Q psy274          152 NSWGPIGPDEGFFKIERGN---NACGIETIAGYATI  184 (187)
Q Consensus       152 NSWG~~WG~~Gy~~i~~~~---n~cgi~~~~~~~~~  184 (187)
                      ||||++||++|||||+|+.   |.|||++++++|++
T Consensus       189 NSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p~~  224 (224)
T 3f75_A          189 NSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM  224 (224)
T ss_dssp             CSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEEEC
T ss_pred             CCcCcchhhCCEEEEEcCCCCCCcCcccCceeeeeC
Confidence            9999999999999999998   99999999999985

>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1

Probab=100.00  E-value=1.3e-51  Score=341.76  Aligned_cols=174  Identities=29%  Similarity=0.558  Sum_probs=159.1

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCC-Ccceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDK-SKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++.|+++|++|||.   +..+.|.... ....+++.
T Consensus       139 alE~~~~i~~g~~~~lSeq~lvdC~~~~~gC~GG~-~~~a~~yi~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~~i~  214 (322)
T 1pci_A          139 TVEGINKIRTGKLVELSEQELVDCERRSHGCKGGY-PPYALEYVAKNGIHLRSKYPYK---AKQGTCRAKQVGGPIVKTS  214 (322)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHSCTTSCGGGCBC-HHHHHHHHHHHCBCBTTTSCCC---SSCCCCTTTTCCSCCBCCC
T ss_pred             HHHHHHHHHcCCccccCHHHHHhhcCCCCCCCCCC-HHHHHHHHHHhCCCchhhCCCC---CCCCCCCCCCCCCceEEEe
Confidence            58999999999999999999999996688999999 9999999888899999999999   8888998764 33567889


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  +++.||++|++ |||+++|.+  ++|+.|++|||..   +|+. ..+|||+|||||+++|.+|||||||||
T Consensus       215 -~~~~v~~~~e~~l~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~---~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG  288 (322)
T 1pci_A          215 -GVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG---PCGT-KVDGAVTAVGYGKSGGKGYILIKNSWG  288 (322)
T ss_dssp             -CEEECCSSBHHHHHHHHHH-SCEEEEECTTCHHHHTEEEEEECC---SCCS-CCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             -eEEEeCCCcHHHHHHHHHH-CCEEEEEecccccccccCCeEeCC---CCCC-CCCEEEEEEEEeccCCccEEEEEeCCC
Confidence             999887  78899999997 999999999  4899999999976   6876 479999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+|+.    |.|||++.+++|++
T Consensus       289 ~~WGe~GY~~i~r~~~~~~n~CgI~~~~~yp~~  321 (322)
T 1pci_A          289 TAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTK  321 (322)
T ss_dssp             SSSTBTTEEEEECCCSBSSCGGGGGGCCEEECC
T ss_pred             CcccCCeEEEEEcCCCCCCCcCCcccceeEEEe
Confidence            999999999999996    89999999999976

>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}

Probab=100.00  E-value=3.7e-51  Score=321.73  Aligned_cols=171  Identities=29%  Similarity=0.626  Sum_probs=155.6

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCC-cceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKS-KVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|++++|+++|++|||.   +..+.|..... ...++++
T Consensus        33 ~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~y~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~~i~  108 (214)
T 2bdz_A           33 TIEGINKIITGQLISLSEQELLDCERRSHGCDGGY-QTTSLQYVVDNGVHTEREYPYE---KKQGRCRAKDKKGPKVYIT  108 (214)
T ss_dssp             HHHHHHHHHHSCBCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHCEEBTTTSCCC---SSCCCCCTTTCCSCEECCC
T ss_pred             HHHHHHHHhcCCccccCHHHHHhhcCCCCCCCCCC-HHHHHHHHHHhCCCccccCCCC---CCCCCCCCCCCCCceeeec
Confidence            58999999999999999999999997688999999 9999999777799999999999   77888987654 4578899


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|++ |||+++|.+  ++|+.|++|||..   +|+. .++|||+|||||+    +|||||||||
T Consensus       109 -~y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~---~~~~-~~~HaV~iVGyg~----~yWivkNSWG  178 (214)
T 2bdz_A          109 -GYKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEG---PCGT-NTDHAVTAVGYGK----TYLLLKNSWG  178 (214)
T ss_dssp             -EEEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC---SCCS-CCCEEEEEEEECS----SEEEEECSBC
T ss_pred             -CEEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceecC---CCCC-CCCeEEEEEEcCC----CeEEEEeCCC
Confidence             999887  78899999998 999999999  3899999999987   5766 5899999999996    8999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      ++||++|||||+|+.    |.|||++.+++|+++
T Consensus       179 ~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  212 (214)
T 2bdz_A          179 PNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIKG  212 (214)
T ss_dssp             TTSTBTTEEEEECCCSBSSCGGGTTSCEEEEECC
T ss_pred             CCcccCCEEEEEcCCCCCCCcccccccceEEEec
Confidence            999999999999986    899999999999874

>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*

Probab=100.00  E-value=4.9e-51  Score=319.76  Aligned_cols=168  Identities=26%  Similarity=0.560  Sum_probs=152.8

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|+++. |+++|++|||.   +..+.|+.  ....+++.
T Consensus        33 ~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~y~~~~~Gi~~e~~yPY~---~~~~~C~~--~~~~~~i~  106 (208)
T 1o0e_A           33 TVESINQIRTGNLISLSEQELVDCDKKNHGCLGGA-FVFAYQYIINNGGIDTQANYPYK---AVQGPCQA--ASKVVSID  106 (208)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCC--CCCCBCCC
T ss_pred             HHHHHHHHhcCCceecCHHHhhhhcCCCCCCCCCC-HHHHHHHHHHhCCcCcccccCcc---CCCCcCCC--CCceEEeC
Confidence            48999999999999999999999996689999999 99999997665 99999999999   77889986  34567888


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       +|..++  ++++||++|++ |||+++|++ + +|+.|++|||..   +|+. ..+|||+|||||+    +|||||||||
T Consensus       107 -~~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~---~c~~-~~~HaV~iVGyg~----~yWivkNSWG  176 (208)
T 1o0e_A          107 -GYNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFSG---PCGT-KLNHGVTIVGYQA----NYWIVRNSWG  176 (208)
T ss_dssp             -EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC---CCCS-CCCEEEEEEEECS----SEEEEECSBC
T ss_pred             -eEEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceECC---CCCC-cCCEEEEEEEeCC----CeEEEEcCCC
Confidence             998887  78899999987 999999999 5 899999999986   5776 4799999999996    8999999999


Q ss_pred             CCCCCCcEEEEEecC--CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN--NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~--n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+|+.  |.|||++++++|++
T Consensus       177 ~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p~~  207 (208)
T 1o0e_A          177 RYWGEKGYIRMLRVGGCGLCGIARLPYYPTK  207 (208)
T ss_dssp             TTSTBTTEEEEECCSTTCGGGTTSSCEEEEC
T ss_pred             CcccCCcEEEEEcCCCCCcCCCcccceeeec
Confidence            999999999999996  89999999999985

>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1

Probab=100.00  E-value=4.2e-51  Score=324.45  Aligned_cols=175  Identities=30%  Similarity=0.610  Sum_probs=156.5

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCC-Ccceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDK-SKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~   77 (187)
                      +||++++|++++.++||+|+|+||+.. +.||+||+ +..||+|+++. |+++|++|||.   +..+.|.... ....++
T Consensus        34 ~le~~~~i~~g~~~~lS~q~l~dC~~~~~~gC~GG~-~~~a~~y~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~~  109 (229)
T 1s4v_A           34 AVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGL-MDYAFEFIKQRGGITTEANYPYE---AYDGTCDVSKENAPAVS  109 (229)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCHHHHTCCCBC
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHhhCCCCCCCCCCCC-HHHHHHHHHHhCCccccccCCcc---CCCCCCCCCCCCCcEEE
Confidence            489999999999999999999999963 88999999 99999997665 99999999999   7788897542 345678


Q ss_pred             eccceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecC-CccEEEEEc
Q psy274           78 TGKDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQD-DIPYWLARN  152 (187)
Q Consensus        78 i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkN  152 (187)
                      +. +|..++  +++.||++|++ |||+++|.+  ++|+.|++|||..   +|+. ..+|||+|||||+++ |++||||||
T Consensus       110 i~-~y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~---~c~~-~~~HaV~iVGyg~~~~g~~yWivkN  183 (229)
T 1s4v_A          110 ID-GHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTG---SCGT-ELDHGVAIVGYGTTIDGTKYWTVKN  183 (229)
T ss_dssp             CC-EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC---CCCC-CCCEEEEEEEEEECTTSCEEEEEEC
T ss_pred             ee-eEEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEECC---CCCC-CCCeEEEEEEeccccCCCCEEEEEe
Confidence            88 998887  78899999987 999999999  4899999999976   5776 479999999999887 999999999


Q ss_pred             cCCCCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          153 SWGPIGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      |||++||++|||||+|+.    |.|||++++.+|+++
T Consensus       184 SWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~~  220 (229)
T 1s4v_A          184 SWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK  220 (229)
T ss_dssp             SBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred             CCCCCccCCcEEEEEcCCCCCCCcCcccccceeeEec
Confidence            999999999999999985    899999999999864

>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A

Probab=100.00  E-value=4.5e-51  Score=332.46  Aligned_cols=177  Identities=24%  Similarity=0.458  Sum_probs=155.6

Q ss_pred             CchhhHHHHhC-C--CccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccC-C------
Q psy274            1 MLEGQYAIKTG-K--LVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAY-D------   70 (187)
Q Consensus         1 a~E~~~~i~~~-~--~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~-~------   70 (187)
                      +||++++|+++ +  .++||+|+|+||+. ..||+||+ +..||+|++++|+++|++|||.   +....|.. .      
T Consensus        74 alE~~~~i~~~g~~~~~~LS~Q~lvdC~~-~~gC~GG~-~~~a~~yi~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~  148 (277)
T 1deu_A           74 AMADRINIKRKGAWPSTLLSVQNVIDCGN-AGSCEGGN-DLSVWDYAHQHGIPDETCNNYQ---AKDQECDKFNQCGTCN  148 (277)
T ss_dssp             HHHHHHHHHTTTCSSCCCBCHHHHHHHSS-SEETBEEC-HHHHHHHHHHTCBCBGGGSCCC---SSCCCCCHHHHSEEEE
T ss_pred             HHHHHHHHHhCCCCCCcccCHHHHHhCcC-CCCCCCCC-HHHHHHHHHHcCCCcCccCCCc---CCCCCccccccccccc
Confidence            58999999986 3  48999999999997 48999999 9999999888999999999999   66666752 1      


Q ss_pred             --------CCcceeeeccceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEee
Q psy274           71 --------KSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK  141 (187)
Q Consensus        71 --------~~~~~~~i~~~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~  141 (187)
                              .....+++. +|..+.++++||++|+++|||+++|.+ ++|+.|++|||..  +.+ ...++|||+|||||+
T Consensus       149 ~~~~c~~~~~~~~~~i~-~y~~v~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GIy~~--~~~-~~~~~HaV~iVGyg~  224 (277)
T 1deu_A          149 EFKECHAIRNYTLWRVG-DYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAE--YQD-TTYINHVVSVAGWGI  224 (277)
T ss_dssp             ETTEEEECSSCCCBCEE-EEEEECSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECB--CCS-CCCCCEEEEEEEEEE
T ss_pred             cCcccccccCcceEEec-eeEecCCHHHHHHHHHHcCCEEEEEecccccccCcCcEECC--CCC-CCcCCeEEEEEEecc
Confidence                    112456777 888888889999999999999999999 8999999999987  334 346899999999999


Q ss_pred             cCCccEEEEEccCCCCCCCCcEEEEEecCC--------eecccceeeEEEEEe
Q psy274          142 QDDIPYWLARNSWGPIGPDEGFFKIERGNN--------ACGIETIAGYATIDV  186 (187)
Q Consensus       142 ~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n--------~cgi~~~~~~~~~~~  186 (187)
                      ++|++|||||||||++||++|||||+|+.|        .||||+.+++++.+|
T Consensus       225 ~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~cgIe~~~~~~~p~~  277 (277)
T 1deu_A          225 SDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGDPIV  277 (277)
T ss_dssp             ETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEEECC
T ss_pred             cCCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccceeccccEeecccC
Confidence            999999999999999999999999999998        999999999998864

>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}

Probab=100.00  E-value=5.4e-51  Score=329.34  Aligned_cols=175  Identities=30%  Similarity=0.642  Sum_probs=156.8

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcC-CCCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCC---Ccc-
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAK-QCSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDK---SKV-   74 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~-~~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~---~~~-   74 (187)
                      +||++++|++++.++||+|+|+||+. .+.||+||+ +..||+|+++. |+++|++|||.   +..+.|....   ... 
T Consensus        36 alE~~~~i~~g~~~~LSeQ~lvdC~~~~~~GC~GG~-~~~a~~yi~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~~  111 (262)
T 2fo5_A           36 SVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGL-MDNAFEYIKNNGGLITEAAYPYR---AARGTCNVARAAQNSPV  111 (262)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCCSSCCGGGCBC-HHHHHHHHHHTTCEEBTTTSCCC---SSCCCCCHHHHHHHCCC
T ss_pred             HHHHHHHHHcCCCCCcCHHHHHhhcCCCCCCCCCCC-HHHHHHHHHHcCCcCchhcCCCc---CccCccCCcccccCCce
Confidence            58999999999999999999999997 489999999 99999997665 99999999999   7788998653   345 


Q ss_pred             eeeeccceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeec-CCccEEE
Q psy274           75 KLFTGKDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ-DDIPYWL  149 (187)
Q Consensus        75 ~~~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~-~g~~ywi  149 (187)
                      .+++. +|..++  +++.||++|++ |||+++|.+  ++|+.|++|||..   +|+.. .+|||+|||||++ +|++|||
T Consensus       112 ~~~i~-~y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sGVy~~---~c~~~-~~HaV~IVGyg~~~~G~~YWi  185 (262)
T 2fo5_A          112 VVHID-GHQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEGVFTG---ECGTE-LDHGVAVVGYGVAEDGKAYWT  185 (262)
T ss_dssp             EECCC-EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC---CCCCC-CCEEEEEEEEEECTTSCEEEE
T ss_pred             eEEec-eEEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCCceECC---CCCCc-CCEEEEEEEEcccCCCceEEE
Confidence            67888 999887  78899999998 999999999  4899999999976   68764 7999999999987 5999999


Q ss_pred             EEccCCCCCCCCcEEEEEecCC----eecccceeeEEEEE
Q psy274          150 ARNSWGPIGPDEGFFKIERGNN----ACGIETIAGYATID  185 (187)
Q Consensus       150 vkNSWG~~WG~~Gy~~i~~~~n----~cgi~~~~~~~~~~  185 (187)
                      ||||||++||++|||||+|+.|    .|||++.+++|+++
T Consensus       186 vkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p~~~  225 (262)
T 2fo5_A          186 VKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKT  225 (262)
T ss_dssp             EECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEEECC
T ss_pred             EEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEEEec
Confidence            9999999999999999999864    49999999999864

>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1

Probab=100.00  E-value=1.2e-50  Score=318.59  Aligned_cols=171  Identities=29%  Similarity=0.530  Sum_probs=151.7

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCC-Ccceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDK-SKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~   79 (187)
                      +||++++|++++.++||+|+|+||+..+.||+||+ +..||+|++++|+++|++|||.   +..+.|.... ....+++.
T Consensus        33 ~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~-~~~a~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~~~~~~~i~  108 (213)
T 3ioq_A           33 AVEGINKIVTGQLLSLSEQELLDCERRSYGCRGGF-PLYALQYVANSGIHLRQYYPYE---GVQRQCRASQAKGPKVKTD  108 (213)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHCEEBGGGSCCC---SSCCCCCGGGCCSCEECCC
T ss_pred             HHHHHHHHHcCCCcccCHHHhhhhcCCCCCCCCCC-HHHHHHHHHHcCCCchhccCcC---CCCCCCCCCccCCceEEec
Confidence            58999999999999999999999998789999999 9999999877799999999999   8888998643 45678888


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP  156 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~  156 (187)
                       +|..++ +.++++++++.+|||+++|++  ++|+.|++|||..   .|+. .++|||+|||||+    +|||||||||+
T Consensus       109 -~~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~---~~~~-~~~HaV~iVGyg~----~yWivkNSWG~  179 (213)
T 3ioq_A          109 -GVGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAG---PCGT-SIDHAVAAVGYGN----DYILIKNSWGT  179 (213)
T ss_dssp             -EEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC---SCCS-CCCEEEEEEEEET----TEEEEECSBCT
T ss_pred             -cEEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcC---CCCC-ccCceEEEEecCC----CeEEEECCCCC
Confidence             999997 445555555556999999999  5899999999987   5654 5799999999995    89999999999


Q ss_pred             CCCCCcEEEEEecC----CeecccceeeEEEE
Q psy274          157 IGPDEGFFKIERGN----NACGIETIAGYATI  184 (187)
Q Consensus       157 ~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~  184 (187)
                      +||++|||||+|+.    |.|||++.+++|++
T Consensus       180 ~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~  211 (213)
T 3ioq_A          180 GWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK  211 (213)
T ss_dssp             TSTBTTEEEEESSCSSTTCGGGTTSCCEEEEC
T ss_pred             CcccCCeEEEEcCCCCCCCcccccCcceEeEe
Confidence            99999999999987    89999999999986

>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*

Probab=100.00  E-value=3.2e-50  Score=344.72  Aligned_cols=177  Identities=31%  Similarity=0.552  Sum_probs=156.4

Q ss_pred             CchhhHHHHhCCCc--cCCHHHHhhhcCCCCCCCCCccchhh-HHHHHhCcccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLV--EFSKSQLVECAKQCSGCGGCDGLEQP-IEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~--~lS~q~l~dc~~~~~gC~gG~~~~~a-~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      |||++++|++++.+  .||+|+|+||+..+.||+||+ +..| ++|+++.|+++|++|||.   +..+.|.........+
T Consensus       242 alE~~~~i~tg~~~~~~LSeQ~LvdC~~~~~GC~GG~-~~~aa~~yi~~~Gi~tE~~yPY~---~~~~~C~~~~~~~~~~  317 (441)
T 3pdf_A          242 MLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGF-PYLIAGKYAQDFGLVEEACFPYT---GTDSPCKMKEDCFRYY  317 (441)
T ss_dssp             HHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHTTHHHHHTCBCBGGGSCCC---SSCCCSCCCSSCCCBC
T ss_pred             HHHHHHHHhccCCCccccCHHHHHhhccCCCCCCCCc-hhHHHHHHHHhcCCCcHHHeeec---ccCCCCCCccccceee
Confidence            58999999999864  599999999998789999999 8887 899888999999999999   8888998766556667


Q ss_pred             eccceeEeC------ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCC-----CcccEEEEEEEEeec--C
Q psy274           78 TGKDFLYFN------GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSP-----NAIGHAVLLVGYGKQ--D  143 (187)
Q Consensus        78 i~~~~~~i~------~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~-----~~~~Hav~iVGyg~~--~  143 (187)
                      +. +|..+.      ++++||++|+++|||+++|.+ ++|++|++|||..  +.|..     ..++|||+|||||++  +
T Consensus       318 ~~-~y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sGVy~~--~~~~~~~~~~~~~~HaV~iVGyG~~~~~  394 (441)
T 3pdf_A          318 SS-EYHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHH--TGLRDPFNPFELTNHAVLLVGYGTDSAS  394 (441)
T ss_dssp             EE-EEEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSSEECC--C---CCCCCCCCCCEEEEEEEEEECTTT
T ss_pred             ec-cEEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCceEec--CCCCcccCCCCcCCeEEEEEEecccCCC
Confidence            77 777763      788999999999999999999 8999999999987  44432     358999999999975  7


Q ss_pred             CccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEE
Q psy274          144 DIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATI  184 (187)
Q Consensus       144 g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~  184 (187)
                      |.+|||||||||++||++|||||+|+.|.|||++.++++..
T Consensus       395 G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~~P  435 (441)
T 3pdf_A          395 GMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAATP  435 (441)
T ss_dssp             CCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEEEE
T ss_pred             CceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEeec
Confidence            89999999999999999999999999999999999998875

>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...

Probab=100.00  E-value=1.5e-50  Score=327.80  Aligned_cols=181  Identities=26%  Similarity=0.436  Sum_probs=150.6

Q ss_pred             CchhhHHHHhC--CCccCCHHHHhhhcC--CCCCCCCCccchhhHHHHHhCcccc-------cccccccCCC------CC
Q psy274            1 MLEGQYAIKTG--KLVEFSKSQLVECAK--QCSGCGGCDGLEQPIEYTHQAGLES-------EKDYPYRNGN------GE   63 (187)
Q Consensus         1 a~E~~~~i~~~--~~~~lS~q~l~dc~~--~~~gC~gG~~~~~a~~~~~~~Gi~~-------e~~yPY~~~~------~~   63 (187)
                      +||++++|+++  ..++||+|+|+||+.  .+.||+||+ +..||+|++++|+++       |++|||...+      +.
T Consensus        43 ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~-~~~a~~y~~~~Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~  121 (266)
T 3cbj_A           43 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGY-PAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGA  121 (266)
T ss_dssp             HHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBC-HHHHHHHHHHTCBCBCCSTTCCCSSSCCCSCCCSCCCSCS
T ss_pred             HHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCC-HHHHHHHHHHhCcCcCccccccccccCcccccccccccCC
Confidence            58999999986  379999999999986  378999999 999999988899999       9999998321      23


Q ss_pred             cccccC---------CCCc--------ceeeeccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCC
Q psy274           64 KFKCAY---------DKSK--------VKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEI  124 (187)
Q Consensus        64 ~~~C~~---------~~~~--------~~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~  124 (187)
                      .+.|..         .+..        ...... .+..++ ++++||++|+++|||+++|.+ ++|+.|++|||..   +
T Consensus       122 ~~~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~-~~~~v~~~~~~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~---~  197 (266)
T 3cbj_A          122 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGY-NSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQH---V  197 (266)
T ss_dssp             SCCCCSCCCCCCCCCSCCTTCCSCTGGGCBCBS-CCEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECC---C
T ss_pred             CCCCccccCCCccccccCCCCcceeeeeeeeee-eeEEeCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCeEEec---C
Confidence            344532         1100        011222 334455 899999999999999999999 8999999999987   4


Q ss_pred             CCCCcccEEEEEEEEeecCCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEEEe
Q psy274          125 CSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATIDV  186 (187)
Q Consensus       125 ~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~~  186 (187)
                      |....++|||+|||||+++|++|||||||||++||++|||||+|+.|.|||++.++++++++
T Consensus       198 ~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgI~~~~~~~~p~~  259 (266)
T 3cbj_A          198 TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPRT  259 (266)
T ss_dssp             SSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBCC
T ss_pred             CCCccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCEEEEEcCCCcccccCceEEEEeec
Confidence            55556799999999999999999999999999999999999999999999999999988754

>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A

Probab=100.00  E-value=2.3e-50  Score=333.74  Aligned_cols=180  Identities=27%  Similarity=0.464  Sum_probs=150.5

Q ss_pred             CchhhHHHHhCC--CccCCHHHHhhhcC-C-CCCCCCCccchhhHHHHHhCcccccccc-------cccCCC------CC
Q psy274            1 MLEGQYAIKTGK--LVEFSKSQLVECAK-Q-CSGCGGCDGLEQPIEYTHQAGLESEKDY-------PYRNGN------GE   63 (187)
Q Consensus         1 a~E~~~~i~~~~--~~~lS~q~l~dc~~-~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~y-------PY~~~~------~~   63 (187)
                      |||++++|+++.  .+.||+|+|+||+. . +.||+||+ +..||+|++++|+++|++|       ||...+      +.
T Consensus       100 ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~-~~~A~~yi~~~Gi~te~~Y~~~~~c~PY~~~~c~~~~~~~  178 (317)
T 3pbh_A          100 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGY-PAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS  178 (317)
T ss_dssp             HHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBC-HHHHHHHHHHTCEEBBCSTTCCCBSSCCCSCCCCCCCTTC
T ss_pred             HHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCC-HHHHHHHHHHhCCCcchhccCCCCCcCcccCcccccccCc
Confidence            589999999875  89999999999987 3 78999999 9999999888899999888       998421      23


Q ss_pred             cccccC---------CCCc---c-----eeeeccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCC
Q psy274           64 KFKCAY---------DKSK---V-----KLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEI  124 (187)
Q Consensus        64 ~~~C~~---------~~~~---~-----~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~  124 (187)
                      .+.|..         .+..   .     ..... ....++ ++++||++|+++|||+++|.+ ++|++|++|||..   +
T Consensus       179 ~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~-~~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~GVy~~---~  254 (317)
T 3pbh_A          179 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGY-NSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQH---V  254 (317)
T ss_dssp             CSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBC-CCEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEEEECC---C
T ss_pred             CCCCCCcCCCCcccccccCCCccceeeeeeeee-ecccCCcHHHHHHHHHHHCCCEEEEEEecccccCCCCcEEcc---C
Confidence            344532         1110   0     11122 234555 899999999999999999999 9999999999987   5


Q ss_pred             CCCCcccEEEEEEEEeecCCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274          125 CSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       125 ~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      |+...++|||+|||||+++|.+|||||||||++||++|||||+|+.|.|||++.+++++..
T Consensus       255 ~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~p~  315 (317)
T 3pbh_A          255 TGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR  315 (317)
T ss_dssp             SCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBC
T ss_pred             CCCCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEeeecC
Confidence            7666679999999999999999999999999999999999999999999999999987654

>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*

Probab=100.00  E-value=3.7e-49  Score=317.66  Aligned_cols=179  Identities=27%  Similarity=0.509  Sum_probs=147.8

Q ss_pred             CchhhHHHHhC--CCccCCHHHHhhhcCC-CCCCCCCccchhhHHHHHhCcccccccc-------cccCC------CCCc
Q psy274            1 MLEGQYAIKTG--KLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYTHQAGLESEKDY-------PYRNG------NGEK   64 (187)
Q Consensus         1 a~E~~~~i~~~--~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~~~~Gi~~e~~y-------PY~~~------~~~~   64 (187)
                      |||++++|+++  ..++||+|+|+||+.. +.||+||+ +..||+|++++|+++|++|       ||...      .+..
T Consensus        39 ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~GG~-~~~a~~yi~~~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~  117 (254)
T 3qsd_A           39 AMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGI-LGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKY  117 (254)
T ss_dssp             HHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBCBC-HHHHHHHHHHTCBCBCCCTTTCCSSSCCSSCCCBCSSCSSS
T ss_pred             HHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCCCC-HHHHHHHHHHcCCCcccccccCcCcCCcccccccccccCcC
Confidence            58999999987  6899999999999865 78999999 9999999888899999888       99731      1233


Q ss_pred             ccccC----------CCCc----c----eeeeccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCC
Q psy274           65 FKCAY----------DKSK----V----KLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEI  124 (187)
Q Consensus        65 ~~C~~----------~~~~----~----~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~  124 (187)
                      +.|..          .+..    .    ..... ....+. ++++||++|+++|||+++|.+ ++|+.|++|||..   +
T Consensus       118 ~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~---~  193 (254)
T 3qsd_A          118 PPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGK-SSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKH---I  193 (254)
T ss_dssp             CBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCS-EEEECCSCHHHHHHHHHHHCCEEEEEEEEGGGGGCCSSEECC---C
T ss_pred             CCCcccccCCccccccccCCccceeeeeeeeee-eeEecCCcHHHHHHHHHHcCCEEEEEEeccccccccCCeecc---C
Confidence            34431          1111    0    01111 223444 899999999999999999999 8999999999987   4


Q ss_pred             CCCCcccEEEEEEEEeecCCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEE
Q psy274          125 CSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATI  184 (187)
Q Consensus       125 ~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~  184 (187)
                      +....++|||+|||||++++++|||||||||++||++|||||+|+.|.|||++.+++++.
T Consensus       194 ~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~rg~n~CgI~~~~~~~~p  253 (254)
T 3qsd_A          194 TGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVRGRDECSIESEVTAGRI  253 (254)
T ss_dssp             SSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSSEEEEEC
T ss_pred             CCCCCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEEEEcCCCeecCCCceEeecc
Confidence            545567999999999999999999999999999999999999999999999999998864

>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}

Probab=100.00  E-value=7.7e-48  Score=322.62  Aligned_cols=170  Identities=29%  Similarity=0.529  Sum_probs=148.4

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCC-Ccceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDK-SKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~   79 (187)
                      |||++++|++++.+.||+|+|+||+..+.||+||. +..||+|+++.|+++|++|||.   +..+.|.... .....++.
T Consensus       184 alE~~~~i~tg~~~~LSeQ~LvdC~~~~~GC~GG~-~~~a~~yi~~~Gi~~e~~yPY~---~~~~~c~~~~~~~~~~~~~  259 (363)
T 3tnx_A          184 TIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGY-PWSALQLVAQYGIHYRNTYPYE---GVQRYCRSREKGPYAAKTD  259 (363)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHTCBCBTTTSCCC---SSCCCCCGGGGCSCSBCCC
T ss_pred             cHHHHHHHHcCCCCCcCHHHHhcccCCCCCCCCCC-hHHHHhHHHhcCccccccCCCc---CcCCCcccCCCCCceeecc
Confidence            58999999999999999999999998899999999 9999999989999999999999   7777776433 33455666


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       .+..+.  ++..++.+|++ |||+|++++  ++|++|++|||..   +|+. ..+|||+|||||+    +|||||||||
T Consensus       260 -~~~~~~~~~e~~l~~~v~~-gPvsvai~a~~~~F~~Y~sGVy~~---~~~~-~lnHaV~iVGyG~----~YWIVKNSWG  329 (363)
T 3tnx_A          260 -GVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVG---PCGN-KVDHAVAAVGYGP----NYILIRNSWG  329 (363)
T ss_dssp             -EEEEECSSCHHHHHHHHTT-SCEEEEECCCSHHHHTEEEEEECC---CCCS-CCCEEEEEEEEET----TEEEEECSBC
T ss_pred             -ceEEcchhhHHHHHHHHHc-CCcEEEEEecchhhhCCCCCEECC---CCCC-CCCeEEEEEEcCC----CcEEEEeCCC
Confidence             777776  66677777765 999999987  6899999999987   5765 4799999999994    5999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~  184 (187)
                      ++||++|||||+||.    |.|||++.++||+-
T Consensus       330 t~WGe~GY~rI~Rg~~~~~~~CGI~~~a~yPik  362 (363)
T 3tnx_A          330 TGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK  362 (363)
T ss_dssp             TTSTBTTEEEEECCSCCSSCGGGTTSCEEEEEC
T ss_pred             CccccCcEEEEEcCCCCCCCcCCccceeeeccc
Confidence            999999999999987    45999999999984

>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X

Probab=100.00  E-value=1.6e-47  Score=309.80  Aligned_cols=182  Identities=24%  Similarity=0.439  Sum_probs=144.2

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHhCc-ccccccccccCCCCCcccccCCCC-----
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQAG-LESEKDYPYRNGNGEKFKCAYDKS-----   72 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~~G-i~~e~~yPY~~~~~~~~~C~~~~~-----   72 (187)
                      +||++++|++++.++||+|+|+||+..  +.||+||..+..++.+++++| +++|++|||... ...+.|+....     
T Consensus        42 alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~i~~~Ggi~~e~~yPY~~~-~~~~~C~~~~~~~~~~  120 (265)
T 2wbf_X           42 HLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQIIEDYGFLPAESNYPYNYV-KVGEQCPKVEDHWMNL  120 (265)
T ss_dssp             HHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHHHHHHCCCCBTTTSCCCGG-GTTSCCCCCCTTCCCT
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHHHHHcCCCCCccccCCcCC-CCCCCCCCcccccccc
Confidence            589999999999999999999999864  789999972445557776656 999999999821 12456764321     


Q ss_pred             ------------cceeeeccceeEeC------C----hHHHHHHHHhCCCEEEEEECccccccC-CceeeCCCCCCCCCc
Q psy274           73 ------------KVKLFTGKDFLYFN------G----SETMKKILYKYGPLSVGLNGHLIHFYN-GTPIKKNDEICSPNA  129 (187)
Q Consensus        73 ------------~~~~~i~~~~~~i~------~----~~~ik~~l~~~gPV~v~~~~~~f~~y~-~giy~~~~~~~~~~~  129 (187)
                                  +...++. +|..+.      +    +++||++|+++|||+++|.+++|+.|+ +|++..  +.|+...
T Consensus       121 ~~~~~~~~~~~~~~~~~~~-~y~~~~~~~~~~~~~~~~~~ik~~i~~~GPV~v~i~~~~f~~y~~~g~~~~--~~c~~~~  197 (265)
T 2wbf_X          121 WDNGKILHNKNEPNSLDGK-GYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVK--NLCGDDT  197 (265)
T ss_dssp             TTTCEECCCCCSSSTTCCS-SEEEEEGGGGTTCHHHHHHHHHHHHHHHSCEEEEECGGGGCSGGGGSSSEE--CCCCCSC
T ss_pred             ccccccccccCCCceeecC-CceEeeccccccchhhHHHHHHHHHHhcCCEEEEEEcccccccccCCcEEc--CCCCCCc
Confidence                        2234667 777665      1    378999999999999999996677774 555444  3587767


Q ss_pred             ccEEEEEEEEeec---CC--ccEEEEEccCCCCCCCCcEEEEEe-cCCeecccceeeEEEEEe
Q psy274          130 IGHAVLLVGYGKQ---DD--IPYWLARNSWGPIGPDEGFFKIER-GNNACGIETIAGYATIDV  186 (187)
Q Consensus       130 ~~Hav~iVGyg~~---~g--~~ywivkNSWG~~WG~~Gy~~i~~-~~n~cgi~~~~~~~~~~~  186 (187)
                      ++|||+|||||++   +|  ++|||||||||++||++|||||+| +.|.||||..+.++..++
T Consensus       198 ~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~~~g~n~Cgi~~~~~~~~~~~  260 (265)
T 2wbf_X          198 ADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVDMYGPTHCHFNFIHSVVIFNV  260 (265)
T ss_dssp             CCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEESSCCTTCSSCSCCEEEEECE
T ss_pred             CCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEEecCCCccCcceeEEEEeccc
Confidence            8999999999985   66  589999999999999999999997 568999999888887764

>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}

Probab=100.00  E-value=5.1e-40  Score=269.09  Aligned_cols=163  Identities=22%  Similarity=0.304  Sum_probs=134.1

Q ss_pred             CchhhHHHHhCCCccCCHHHHh--hhcCC----CCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCC----
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLV--ECAKQ----CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYD----   70 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~--dc~~~----~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~----   70 (187)
                      |||++++ ++++.++||+|+|+  +|...    ..+|+||+ +..||+|+++.|+++|++|||.......+.|...    
T Consensus        86 alE~~~~-~~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~-~~~A~~yi~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~  163 (291)
T 3ois_A           86 AIQFERI-HDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAM-IRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAP  163 (291)
T ss_dssp             HHHHHHH-HTTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEE-HHHHHHHHHHTCCCBGGGSCCCCCCCCTTTCSCCTTCG
T ss_pred             HHHHHHH-HhCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcC-HHHHHHHHHHhCCCCHhhCCCCCCcccccccccccccc
Confidence            4788875 56778899999999  68642    34678999 9999999888899999999999321112445431    


Q ss_pred             ----------CCcceeeeccceeEeC-ChHHHHHHHHhCCCEEEEEEC-ccccccCC--ceeeCCCCCCCCC-cccEEEE
Q psy274           71 ----------KSKVKLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNG-HLIHFYNG--TPIKKNDEICSPN-AIGHAVL  135 (187)
Q Consensus        71 ----------~~~~~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~--giy~~~~~~~~~~-~~~Hav~  135 (187)
                                .....+++. +|..|+ ++++||++|+++|||+++|.+ ++|+.|++  |||..  +.|... .++|||+
T Consensus       164 ~~~~p~~~C~~~~~~~~i~-~y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~~--~~~~~~~~~~Hav~  240 (291)
T 3ois_A          164 ASKKPSDQCYKDAQNYKIT-EYSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPL--PTKNDTLEGGHAVL  240 (291)
T ss_dssp             GGSCCCHHHHHHHGGGCCC-EEEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCCC--CCTTSCEEEEEEEE
T ss_pred             ccCCCCHHHHhhcccceec-cEEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEeC--CCCCCCCcCCeEEE
Confidence                      012457888 999998 899999999999999999999 89999998  99987  566543 4699999


Q ss_pred             EEEEeecCCccEEEEEccCCCCCCCCcEEEEEecC
Q psy274          136 LVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGN  170 (187)
Q Consensus       136 iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~  170 (187)
                      |||||  ++++|||||||||++||++|||||+|+.
T Consensus       241 iVGy~--~~~~ywivkNSWG~~WG~~Gy~~i~~~~  273 (291)
T 3ois_A          241 CVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEY  273 (291)
T ss_dssp             EEEEE--TTTTEEEEECSBCTTSTBTTEEEEEHHH
T ss_pred             EEEEe--CCCCEEEEEeCCCCCCCCCcEEEEEHHH
Confidence            99998  6789999999999999999999999984

>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A

Probab=99.98  E-value=1.8e-32  Score=234.14  Aligned_cols=177  Identities=16%  Similarity=0.209  Sum_probs=133.9

Q ss_pred             CchhhHHHH-hCCCccCCH----------------HHHhhhcCC--------------CCCCCCCccchhhHHHHHhCcc
Q psy274            1 MLEGQYAIK-TGKLVEFSK----------------SQLVECAKQ--------------CSGCGGCDGLEQPIEYTHQAGL   49 (187)
Q Consensus         1 a~E~~~~i~-~~~~~~lS~----------------q~l~dc~~~--------------~~gC~gG~~~~~a~~~~~~~Gi   49 (187)
                      ++|+.++++ +++.++||+                |+|+||+..              +.+|+||. ...|++++++.|+
T Consensus        80 ~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~~~d~R~v~~l~~~~gcdGG~-~~~a~~~i~kyGl  158 (453)
T 2cb5_A           80 VMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKEPEDGRLVQFLLMNPANDGGQ-WDMLVNIVEKYGV  158 (453)
T ss_dssp             HHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHCTTCSCBC-HHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccCCcchhhHHHhcCCCCCCCCC-hHHHHHHHHHcCc
Confidence            478999999 568999999                999999743              78999999 9999999888999


Q ss_pred             cccccccccCCCC--------------C----------cc------c----------------c----------cCC-C-
Q psy274           50 ESEKDYPYRNGNG--------------E----------KF------K----------------C----------AYD-K-   71 (187)
Q Consensus        50 ~~e~~yPY~~~~~--------------~----------~~------~----------------C----------~~~-~-   71 (187)
                      +++++|||.....              .          .+      .                |          ... . 
T Consensus       159 ~p~~~yP~~~~s~ns~~mn~~L~~kLr~~a~~LR~~~~~g~~~~~l~~~k~~~l~~iy~il~~clG~pP~~F~~~~~dkd  238 (453)
T 2cb5_A          159 IPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEISATQDVMMEEIFRVVCICLGNPPETFTWEYRDKD  238 (453)
T ss_dssp             CBGGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSSEEEEEECTT
T ss_pred             cchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHcCCCCceeeEEEEccC
Confidence            9999999984200              0          01      1                4          110 0 


Q ss_pred             ---------Cc-------cee--eeccceeEeC--------------------------------Ch----HHHHHHHHh
Q psy274           72 ---------SK-------VKL--FTGKDFLYFN--------------------------------GS----ETMKKILYK   97 (187)
Q Consensus        72 ---------~~-------~~~--~i~~~~~~i~--------------------------------~~----~~ik~~l~~   97 (187)
                               .+       ...  .+. +|..+.                                ..    +.++.+|.+
T Consensus       239 ~~~~~~~~~TP~~F~~~~~~~~~~~~-~yv~l~n~p~~~~py~~~y~v~~~~Nv~~g~~~~y~Nvp~~~l~~~~~~al~~  317 (453)
T 2cb5_A          239 KNYEKIGPITPLEFYREHVKPLFNME-DKICLVNDPRPQHKHNKLYTVEYLSNMVGGRKTLYNNQPIDFLKKMVAASIKD  317 (453)
T ss_dssp             SCEEEEEEECHHHHHHHHTTTTSCGG-GEEEEECCCCTTSCSSEEEEETTCCSSTTCCCCCEEECCHHHHHHHHHHHHHT
T ss_pred             CcccccCCCCHHHHHHHhcCCcCCCC-CeEEEecCCCCcCcccceeEEeecCcccccccccccccCHHHHHHHHHHHHHc
Confidence                     00       011  334 444331                                12    344578899


Q ss_pred             CCCEEEEEECccccccCCceeeCCCCCC---------------------CCCcccEEEEEEEEe--ec-CCc-cEEEEEc
Q psy274           98 YGPLSVGLNGHLIHFYNGTPIKKNDEIC---------------------SPNAIGHAVLLVGYG--KQ-DDI-PYWLARN  152 (187)
Q Consensus        98 ~gPV~v~~~~~~f~~y~~giy~~~~~~~---------------------~~~~~~Hav~iVGyg--~~-~g~-~ywivkN  152 (187)
                      ++||.+++++..+.++++|||..  +.|                     .....+|||+|||||  .+ +|+ +||+|||
T Consensus       318 g~PV~~~~Dv~~~~~~k~GI~~~--~~~~~~~~fg~~~~~m~KaeRl~~~~s~~~HAmlivGyg~~~d~~G~~~yWiVkN  395 (453)
T 2cb5_A          318 GEAVWFGCDVGKHFNSKLGLSDM--NLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAFTKWRVEN  395 (453)
T ss_dssp             TCCEEEEECTTTTEETTTTEECT--TSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEECTTSCSCEEEEEEEC
T ss_pred             CCCEEEEEEeChhhccCCcEEcC--ccccchhhcCccccccCHHHHhhccCCCCCeEEEEEEeccccccCCCccEEEEEc
Confidence            99999999995455669999986  444                     123579999999999  65 787 9999999


Q ss_pred             cCCCCCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274          153 SWGPIGPDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      |||++||++||++|+|+    .++.+++.++|+
T Consensus       396 SWG~~wG~~GY~~ms~~----wf~ey~~~vvV~  424 (453)
T 2cb5_A          396 SWGEDHGHKGYLCMTDE----WFSEYVYEVVVD  424 (453)
T ss_dssp             SBCTTSTBTTEEEEEHH----HHHHHEEEEEEE
T ss_pred             CcCCCcCcCceEEechh----hHhhceEEEEec
Confidence            99999999999999997    788888888876

>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A

Probab=99.97  E-value=1.4e-30  Score=222.71  Aligned_cols=91  Identities=15%  Similarity=0.181  Sum_probs=77.3

Q ss_pred             HHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCC-------------------CCCcccEEEEEEEEeec-CCc--c
Q psy274           89 ETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEIC-------------------SPNAIGHAVLLVGYGKQ-DDI--P  146 (187)
Q Consensus        89 ~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~-------------------~~~~~~Hav~iVGyg~~-~g~--~  146 (187)
                      +.++.+|.+++||.+++++..|++|++||+..  +.|                   .....+|||+|||||.+ +|+  +
T Consensus       313 ~~~~~aL~~g~PV~~~~Dv~~~~~~~~GI~~~--~~~~~~~fg~~~~m~KaeRl~~~~s~~~HAmlivGyg~d~~G~~p~  390 (457)
T 2e01_A          313 KLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDI--ELWNYPAIGYNLPQQKASRIRYHESLMTAAMLITGCHVDETSKLPL  390 (457)
T ss_dssp             HHHHHHHHTTCCEEEEECTTTTEETTTTEECT--TSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECTTTCCEE
T ss_pred             HHHHHHHHhCCCEEEEEEcCHhHcccCceecc--cccchhhcCcccccCHHHhhccCCCCCCeEEEEEEEEeccCCCccC
Confidence            45567888999999999996688889999965  332                   33357999999999975 788  8


Q ss_pred             EEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274          147 YWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       147 ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      ||+||||||++||++||++|+|+    .++.+++.++|+
T Consensus       391 yW~VkNSWG~~wG~~GY~~ms~~----wf~ey~~~ivV~  425 (457)
T 2e01_A          391 RYRVENSWGKDSGKDGLYVMTQK----YFEEYCFQIVVD  425 (457)
T ss_dssp             EEEEECSSCTTSTBTTEEEEEHH----HHHHHEEEEEEE
T ss_pred             EEEEEeCccCCcCCCceEEeehh----hHhhccEEEEec
Confidence            99999999999999999999996    688888888876

>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}

Probab=99.93  E-value=3.2e-25  Score=185.98  Aligned_cols=177  Identities=12%  Similarity=0.077  Sum_probs=119.7

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC------------CCCCCCCccchhhHHHHHhCccccccccc------ccCCC-
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ------------CSGCGGCDGLEQPIEYTHQAGLESEKDYP------YRNGN-   61 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~------------~~gC~gG~~~~~a~~~~~~~Gi~~e~~yP------Y~~~~-   61 (187)
                      ++|+++++++++.++||+|+|+||+..            +.+|+||. ...|++++++.|+++|++||      +...+ 
T Consensus        42 ~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~-~~~a~~~i~k~Givpe~~YP~~~~~~~~s~n~  120 (383)
T 3pw3_A           42 FLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGS-FYDALYGMETFGLVPEEEMRPGMMYADTLSNH  120 (383)
T ss_dssp             HHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCC-HHHHHHHHHHTCCCBGGGSCTTGGGTCSSCBC
T ss_pred             HHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCC-HHHHHHHHHHcCcCcHHhCCCCCCCCccchhH
Confidence            479999999999999999999999741            57999999 99999999889999999999      22111 


Q ss_pred             --------------CCccccc------------------------CCCC----------c--------------------
Q psy274           62 --------------GEKFKCA------------------------YDKS----------K--------------------   73 (187)
Q Consensus        62 --------------~~~~~C~------------------------~~~~----------~--------------------   73 (187)
                                    +....-.                        .++.          +                    
T Consensus       121 ~~m~~~L~~~Lr~~a~~~~r~l~~~~~~~~~~~~~i~~il~~~LG~pP~~F~~~gk~~TP~~F~~~v~~~~~dyV~l~n~  200 (383)
T 3pw3_A          121 TELSALTDAMVAAIAKGKLRKLQSDENNAMLWKKAVAAVHQIYLGVPPEKFTYKGKEYTPKSFFESTGLKASDYVSLTSY  200 (383)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCCBCTTCCBHHHHHHHHHHHHHHCCCCSSEEETTEEECHHHHHHHHTCCGGGEEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceEEecCCCcCHHHHHHHhCCCccceEEEeeC
Confidence                          0000000                        0000          0                    


Q ss_pred             ------ceeeec-------cceeEeCChHHH----HHHHHhCCCEEEEEEC-c-cccccCCceeeCCCCC----------
Q psy274           74 ------VKLFTG-------KDFLYFNGSETM----KKILYKYGPLSVGLNG-H-LIHFYNGTPIKKNDEI----------  124 (187)
Q Consensus        74 ------~~~~i~-------~~~~~i~~~~~i----k~~l~~~gPV~v~~~~-~-~f~~y~~giy~~~~~~----------  124 (187)
                            +.+.+.       +.|.-+ .++.|    ...|.++-||..+-++ + .|.  +.||.......          
T Consensus       201 p~~py~~~y~ve~~~N~~~g~~~Nv-p~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~--~~Gi~~~~~~~~~~~~~g~~~  277 (383)
T 3pw3_A          201 THHPFYTQFPLEIQDNWRHGMSYNL-PLDEFMEVFDNAINTGYTIAWGSDVSESGFT--RDGVAVMPDDEKVQELSGSDM  277 (383)
T ss_dssp             SSSCTTCEEECCCTTCTTCCEEEEC-CHHHHHHHHHHHHHTTCCEEEEEECCSTTBC--TTSEECCBCHHHHHHHSSCCH
T ss_pred             CCCccCceEEEecCCCccCCccCCc-CHHHHHHHHHHHHHcCCcEEEEcccCccccC--CCceeeCcchhhHHHhcCcch
Confidence                  011110       011112 33444    4567787899999999 4 444  78877431000          


Q ss_pred             -------------------------------C--CCCcccEEEEEEEEee-cCCccEEEEEccCCCCCCCCcEEEEEecC
Q psy274          125 -------------------------------C--SPNAIGHAVLLVGYGK-QDDIPYWLARNSWGPIGPDEGFFKIERGN  170 (187)
Q Consensus       125 -------------------------------~--~~~~~~Hav~iVGyg~-~~g~~ywivkNSWG~~WG~~Gy~~i~~~~  170 (187)
                                                     -  .....+|||+|||||. ++|++||+|+||||++||++||++|+++ 
T Consensus       278 ~~~~~~~kaer~~~~~~~~e~~~tk~~R~~~~d~~~t~~~Ha~~ivG~~~d~~g~~yw~vkNSWg~~~g~~Gy~~m~~~-  356 (383)
T 3pw3_A          278 AHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYDNYETTDDHGMQIYGIAKDQEGNEYYMVKNSWGTNSKYNGIWYASKA-  356 (383)
T ss_dssp             HHHHTSCHHHHCTTTSCCCBCCCCHHHHHHHHHTTSSCCEEEEEEEEEEECTTCCEEEEEECSBCSCSTTTTEEEEEHH-
T ss_pred             hhhccCCHHHhhhccCCCcccCCCHHHHHHHhhhccCcCCeEEEEEEEEEcCCCceEEEEEeCCCCCCCcCCeEEecHH-
Confidence                                           0  0113479999999996 6789999999999999999999999985 


Q ss_pred             CeecccceeeEEEEE
Q psy274          171 NACGIETIAGYATID  185 (187)
Q Consensus       171 n~cgi~~~~~~~~~~  185 (187)
                         =+..+.+.++|+
T Consensus       357 ---wf~e~~~~ivV~  368 (383)
T 3pw3_A          357 ---FVRYKTMNIVVH  368 (383)
T ss_dssp             ---HHHHHEEEEEEE
T ss_pred             ---HHHhhcEEEEec
Confidence               345555555543

>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A

Probab=96.98  E-value=0.019  Score=42.71  Aligned_cols=68  Identities=15%  Similarity=0.214  Sum_probs=53.7

Q ss_pred             ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCCCCCCCcEEEE
Q psy274           87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI  166 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i  166 (187)
                      +.+++++.|.++.||.+...         +++..    -.....+||++|+||-..++.++.++-|=|     ++|++-+
T Consensus        98 s~neV~~~i~~Nk~I~v~~~---------~v~e~----~~~~~~gHA~av~Gya~~~~~~~y~~WNPW-----~~~~~~~  159 (183)
T 1pxv_A           98 SYNQVDQLTKDNVGIMILAQ---------SVSQN----PNDPHLGHALAVVGNAKINDQEKLIYWNPW-----DTELSIQ  159 (183)
T ss_dssp             CHHHHHHHHHTTCCEEEEEE---------CCCSS----TTSCCCEEEEEEEEEEEETTEEEEEEECTT-----CSSCEEE
T ss_pred             CHHHHHHHHhcCCcEEEEcc---------ccccC----CCCccCceeEEEEeeeecCCCeEEEEeCCc-----cCCcEee
Confidence            78899999999999998876         33322    122257999999999988888999999988     4588888


Q ss_pred             EecCCe
Q psy274          167 ERGNNA  172 (187)
Q Consensus       167 ~~~~n~  172 (187)
                      +.+.+.
T Consensus       160 ~a~S~~  165 (183)
T 1pxv_A          160 DADSSL  165 (183)
T ss_dssp             ETTCCE
T ss_pred             cCCCCe
Confidence            876553

>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1

Probab=96.02  E-value=0.11  Score=38.39  Aligned_cols=104  Identities=16%  Similarity=0.226  Sum_probs=70.4

Q ss_pred             CccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeeeccceeEeCChHHHH
Q psy274           13 LVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMK   92 (187)
Q Consensus        13 ~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~~~~i~~~~~ik   92 (187)
                      ...+|+++|..+..        . +...++|+++.|-.                       ..+..+     ..+.++++
T Consensus        52 yPn~S~~~l~~~~~--------t-~~e~iky~~s~g~~-----------------------~~~~n~-----~ls~~eV~   94 (174)
T 1cv8_A           52 HPNLQGQQFQFTGL--------T-PREMIYFGQTQGRS-----------------------PQLLNR-----MTTYNEVD   94 (174)
T ss_dssp             CSSCCHHHHHHCCC--------C-HHHHHHHHHHTTCC-----------------------CEEESS-----CCCHHHHH
T ss_pred             CCCCCHHHHhhcCC--------C-HHHHHHHHHHcCCC-----------------------hhhhcC-----CCCHHHHH
Confidence            46788888885543        2 77788887664431                       011111     11688999


Q ss_pred             HHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEee-cCCccEEEEEccCCCCCCCCcEEEEEecCC
Q psy274           93 KILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK-QDDIPYWLARNSWGPIGPDEGFFKIERGNN  171 (187)
Q Consensus        93 ~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~-~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n  171 (187)
                      +++.++.|+.+..+-         + ..   +. ....+||++||||-. .+|.+|..+-|=|     +++++-++...+
T Consensus        95 ~~~~~nk~i~i~~~~---------v-e~---~~-~~~~gHAlav~Gy~~~~ng~~~y~~WNPW-----~~~~~~~s~~s~  155 (174)
T 1cv8_A           95 NLTKNNKGIAILGSR---------V-ES---RN-GMHAGHAMAVVGNAKLNNGQEVIIIWNPW-----DNGFMTQDAKNN  155 (174)
T ss_dssp             HHHHTTCCEEEEEEE---------S-SC---BT-TBCCEEEEEEEEEEEETTSCEEEEEECTT-----CSSCEEEETTCC
T ss_pred             HHHhcCCceEEEccc---------c-cC---CC-CCCCceeEEEEeeeeecCCceEEEEeCCc-----cCCcEEecCCCC
Confidence            999999999888762         2 11   11 125799999999997 4788999999988     566776666544


Q ss_pred             e
Q psy274          172 A  172 (187)
Q Consensus       172 ~  172 (187)
                      .
T Consensus       156 ~  156 (174)
T 1cv8_A          156 V  156 (174)
T ss_dssp             E
T ss_pred             e
Confidence            3

>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4

Probab=93.20  E-value=0.33  Score=39.81  Aligned_cols=69  Identities=14%  Similarity=0.199  Sum_probs=51.9

Q ss_pred             ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCCCCCCCcEEEE
Q psy274           87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI  166 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i  166 (187)
                      +.+++++.+-.+.||.+.+..         +...    ......+||++||||-..++.+|..+-|=|     +++++-+
T Consensus       274 s~deVk~~id~Nk~I~v~~~~---------v~~~----~n~~~~gHAlavvGyA~~~~~~~y~~WNPW-----~~~~~~~  335 (367)
T 1x9y_A          274 SYNQVDQLTKDNVGIMILAQS---------VSQN----PNDPHLGHALAVVGNAKINDQEKLIYWNPW-----DTELSIQ  335 (367)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEE---------TTSC----SSSCCCSEEEEEEEEEEETTEEEEEEECTT-----CSSCEEE
T ss_pred             CHHHHHHHHhcCCcEEEEccc---------cccC----CCCccCceeEEEEeccccCCCcEEEEecCc-----cCCceee
Confidence            789999999999999998872         1111    122257999999999877788999998988     4557777


Q ss_pred             EecCCee
Q psy274          167 ERGNNAC  173 (187)
Q Consensus       167 ~~~~n~c  173 (187)
                      +...+.-
T Consensus       336 sa~S~~i  342 (367)
T 1x9y_A          336 DADSSLL  342 (367)
T ss_dssp             ETTCCEE
T ss_pred             cCCCCeE
Confidence            7655543

>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}

Probab=91.16  E-value=0.79  Score=35.67  Aligned_cols=57  Identities=19%  Similarity=0.243  Sum_probs=36.4

Q ss_pred             ChHHHHHHHHhCCCEEEEEEC--c-----ccccc--CCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccC
Q psy274           87 GSETMKKILYKYGPLSVGLNG--H-----LIHFY--NGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSW  154 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~--~-----~f~~y--~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW  154 (187)
                      +.++|+++|.++.||++....  .     .|+.+  .+|-...       ....|+|+|+||+.    +...+...+
T Consensus       131 sl~~L~~~I~~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~-------~~~~H~VVl~GYd~----~~vyi~DP~  196 (236)
T 3erv_A          131 SIEELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVSI-------TYNEHCVVLIGYDQ----ESVYIRDPL  196 (236)
T ss_dssp             CHHHHHHHHHTTCCEEEEEETTSSCCCGGGCEEEEETTEEEEE-------CTTEEEEEEEEECS----SEEEEECTT
T ss_pred             CHHHHHHHHHCCCeEEEEEeCCcccccccccceeecCCCceee-------ccCCeEEEEEEEeC----CEEEEECCC
Confidence            899999999998899997754  1     12211  1222211       13589999999984    234454544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	187
d1m6da_	214	d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta	4e-34
d2r6na1	215	d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa	2e-31
g8pch.1	228	d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax	8e-28
d1me4a_	215	d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56	1e-27
d2h7ja1	217	d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa	1e-27
d1cs8a_	316	d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens	3e-27
g1k3b.1	233	d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase	2e-26
d1xkga1	302	d.3.1.1 (A:4-305) Major mite fecal allergen der p	2e-25
d2oula1	241	d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip	4e-25
d1cqda_	216	d.3.1.1 (A:) Proline-specific cysteine protease {G	1e-24
d1gmya_	254	d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens	4e-24
d1aeca_	218	d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi	2e-23
d1deua_	275	d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens	8e-23
d1yala_	218	d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [	1e-22
d1ppoa_	216	d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca	3e-22
d1o0ea_	208	d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv	4e-22
d1iwda_	215	d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia	7e-22
d1fh0a_	221	d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens	2e-21
d1s4va_	224	d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor	2e-19
d1khqa_	212	d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId	2e-19
d3gcba_	458	d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S	5e-05
d2cb5a_	453	d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi	3e-04

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (295), Expect = 4e-34
 Identities = 61/185 (32%), Positives = 95/185 (51%), Gaps = 3/185 (1%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EGQ+ +  G L+  S+ +L++C K    C G           +  GLE+E DY Y   
Sbjct: 33  NVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNLGGLETEDDYSY--- 89

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
            G    C +   K K++           + +   L K GP+SV +N   + FY     + 
Sbjct: 90  QGHMQSCQFSAEKAKVYIQDSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRP 149

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAG 180
              +CSP  I HAVLLVGYG++ D+P+W  +NSWG    ++G++ + RG+ ACG+ T+A 
Sbjct: 150 LRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMAS 209

Query: 181 YATID 185
            A +D
Sbjct: 210 SAVVD 214

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  110 bits (276), Expect = 2e-31
 Identities = 58/185 (31%), Positives = 87/185 (47%), Gaps = 3/185 (1%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            LEGQ   KTGKL+  S   LV+C  +  GCGG              G++SE  YPY   
Sbjct: 33  ALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQ 92

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
              +        K     G   +     + +K+ + + GP+SV ++  L  F   +    
Sbjct: 93  E--ESCMYNPTGKAAKCRGYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVY 150

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIETIA 179
            DE C+ + + HAVL VGYG Q    +W+ +NSWG    ++G+  + R  NNACGI  +A
Sbjct: 151 YDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA 210

Query: 180 GYATI 184
            +  +
Sbjct: 211 SFPKM 215

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

 Score =  101 bits (252), Expect = 1e-27
 Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 6/186 (3%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAK--QCSGCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
            +E Q+ +    L   S+  LV C K       G  +   + I   +   + +E  YPY 
Sbjct: 33  NVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYA 92

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPI 118
           +G G    C      V                +   L   GP++V ++      Y G  +
Sbjct: 93  SGEGISPPCTTSGHTVGATITGHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVM 152

Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETI 178
                 C    + H VLLVGY     +PYW+ +NSW     +EG+ +I +G+N C ++  
Sbjct: 153 TS----CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEE 208

Query: 179 AGYATI 184
           A  A +
Sbjct: 209 ASSAVV 214

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (252), Expect = 1e-27
 Identities = 56/188 (29%), Positives = 89/188 (47%), Gaps = 7/188 (3%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQP---IEYTHQAGLESEKDYPY 57
            LE Q  +KTGKLV  S   LV+C+ +  G  GC+G              G++S+  YPY
Sbjct: 33  ALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPY 92

Query: 58  RNGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTP 117
           +  +  +      K +    +    L +   + +K+ +   GP+SVG++     F+    
Sbjct: 93  KAMD--QKCQYDSKYRAATCSKYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRS 150

Query: 118 IKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGIE 176
               +  C+ N + H VL+VGYG  +   YWL +NSWG    +EG+ ++ R   N CGI 
Sbjct: 151 GVYYEPSCTQN-VNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIA 209

Query: 177 TIAGYATI 184
           +   Y  I
Sbjct: 210 SFPSYPEI 217

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 3e-27
 Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 10/191 (5%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCS--GCGGCDGLEQPIEYTHQAGLESEKDYPYR 58
            LEGQ   KTG+L+  S+  LV+C+      GC G              GL+SE+ YPY 
Sbjct: 129 ALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPY- 187

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPI 118
                +  C Y+                  + + K +   GP+SV ++     F      
Sbjct: 188 --EATEESCKYNPKYSVANDAGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEG 245

Query: 119 KKNDEICSPNAIGHAVLLVGYG----KQDDIPYWLARNSWGPIGPDEGFFKIERG-NNAC 173
              +  CS   + H VL+VGYG    + D+  YWL +NSWG      G+ K+ +   N C
Sbjct: 246 IYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHC 305

Query: 174 GIETIAGYATI 184
           GI + A Y T+
Sbjct: 306 GIASAASYPTV 316

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score = 97.8 bits (242), Expect = 2e-25
 Identities = 33/184 (17%), Positives = 57/184 (30%), Gaps = 3/184 (1%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
             E  Y     + ++ ++ +LV+CA Q    G      + IEY    G+  E  Y Y   
Sbjct: 119 ATESAYLAYRDQSLDLAEQELVDCASQHGCHGDTI--PRGIEYIQHNGVVQESYYRYVAR 176

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
                +    +  +  +        N         +    + +G+       +       
Sbjct: 177 EQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYD-GRTI 235

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAG 180
                      HAV +VGY     + YW+ RNSW     D G+       +   IE    
Sbjct: 236 IQRDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPY 295

Query: 181 YATI 184
              +
Sbjct: 296 VVIL 299

>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Falcipain 2
species: Plasmodium falciparum [TaxId: 5833]

 Score = 95.4 bits (236), Expect = 4e-25
 Identities = 48/199 (24%), Positives = 79/199 (39%), Gaps = 21/199 (10%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +E QYAI+  KL+  S+ +LV+C+ +  GC G        +     G+  + DYPY + 
Sbjct: 50  SVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMIELGGICPDGDYPYVSD 109

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
                       K  +              +K+ L   GP+S+ +       +    I  
Sbjct: 110 APNLCNIDRCTEKYGIKNYLSVPD----NKLKEALRFLGPISISVAVSDDFAFYKEGIFD 165

Query: 121 NDEICSPNAIGHAVLLVGYG----------KQDDIPYWLARNSWGPIGPDEGFFKIERGN 170
                  + + HAV+LVG+G          K +   Y++ +NSWG    + GF  IE   
Sbjct: 166 G---ECGDQLNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDE 222

Query: 171 NA----CGIETIAGYATID 185
           +     CG+ T A    I+
Sbjct: 223 SGLMRKCGLGTDAFIPLIE 241

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

 Score = 93.5 bits (231), Expect = 1e-24
 Identities = 48/187 (25%), Positives = 76/187 (40%), Gaps = 9/187 (4%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I TG L+  S+ QLV+C     GC G           +  G+ SE+ YPYR  
Sbjct: 33  AVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVNNGGINSEETYPYR-- 90

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
            G+   C    +   +         + +E   +      P+SV ++     F        
Sbjct: 91  -GQDGICNSTVNAPVVSIDSYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIF 149

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG----NNACGIE 176
                   +  HA+ +VGYG ++D  +W+ +NSWG    + G+ + ER     +  CGI 
Sbjct: 150 TG--SCNISANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGIT 207

Query: 177 TIAGYAT 183
             A Y  
Sbjct: 208 RFASYPV 214

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.1 bits (230), Expect = 4e-24
 Identities = 48/216 (22%), Positives = 74/216 (34%), Gaps = 35/216 (16%)

Query: 1   MLEGQYAIKTGKLV--EFSKSQLVECAKQCSGCGGCDGL-EQPIEYTHQAGLESEKDYPY 57
            +  +  I T   V  E S   L+ C     G G   G   +   +  + GL S   Y  
Sbjct: 38  AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYES 97

Query: 58  RNG-------------NGEKFKCAYDK-----------------SKVKLFTGKDFLYFNG 87
             G             NG +  C  +                   + K +    +   N 
Sbjct: 98  HVGCRPYSIPPCEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNS 157

Query: 88  SETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPY 147
            + +   +YK GP+    + +               +      GHA+ ++G+G ++  PY
Sbjct: 158 EKDIMAEIYKNGPVEGAFSVYSDFLLYK--SGVYQHVTGEMMGGHAIRILGWGVENGTPY 215

Query: 148 WLARNSWGPIGPDEGFFKIERGNNACGIETIAGYAT 183
           WL  NSW     D GFFKI RG + CGIE+      
Sbjct: 216 WLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGI 251

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

 Score = 90.1 bits (222), Expect = 2e-23
 Identities = 53/188 (28%), Positives = 86/188 (45%), Gaps = 9/188 (4%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSG--CGGCDGLEQPIEYTHQAGLESEKDYPYR 58
            +EG   I TG L+  S+ +L++C +  +   C G    +      +  G+ +E++YPY 
Sbjct: 33  TVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFIINNGGINTEENYPYT 92

Query: 59  NGNGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPI 118
             +GE      ++  V + T ++  Y   +E   +    Y P+SV L+     F   +  
Sbjct: 93  AQDGECNVDLQNEKYVTIDTYENVPY--NNEWALQTAVTYQPVSVALDAAGDAFKQYSSG 150

Query: 119 KKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER---GNNACGI 175
                     AI HAV +VGYG +  I YW+ +NSW     +EG+ +I R   G   CGI
Sbjct: 151 IFTGPCG--TAIDHAVTIVGYGTEGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGI 208

Query: 176 ETIAGYAT 183
            T+  Y  
Sbjct: 209 ATMPSYPV 216

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.1 bits (222), Expect = 8e-23
 Identities = 40/202 (19%), Positives = 68/202 (33%), Gaps = 22/202 (10%)

Query: 1   MLEGQYAIKTGKL---VEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPY 57
            +  +  IK          S   +++C    S  GG D       + H    E+  +Y  
Sbjct: 72  AMADRINIKRKGAWPSTLLSVQNVIDCGNAGSCEGGNDLSVWDYAHQHGIPDETCNNYQA 131

Query: 58  RNGNGE---------KFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGH 108
           ++   +         +FK  +      L+   D+   +G E M   +Y  GP+S G+   
Sbjct: 132 KDQECDKFNQCGTCNEFKECHAIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMAT 191

Query: 109 LIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER 168
                    I    +  +     H V + G+G  D   YW+ RNSWG    + G+ +I  
Sbjct: 192 ERLANYTGGIYAEYQDTTYI--NHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVT 249

Query: 169 G--------NNACGIETIAGYA 182
                         IE    + 
Sbjct: 250 STYKDGKGARYNLAIEEHCTFG 271

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 88.5 bits (218), Expect = 1e-22
 Identities = 50/185 (27%), Positives = 76/185 (41%), Gaps = 9/185 (4%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I TG L+E S+ +LV+C K   GC         ++Y    G+ + K YPY+  
Sbjct: 33  TVEGINKIVTGNLLELSEQELVDCDKHSYGCK-GGYQTTSLQYVANNGVHTSKVYPYQAK 91

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
             +         KVK+   K     +  ET         PLSV +      F        
Sbjct: 92  QYKCRATDKPGPKVKITGYKR--VPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVF 149

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG----NNACGIE 176
           +        + HAV  VGYG  D   Y + +NSWGP   ++G+ +++R        CG+ 
Sbjct: 150 DGPCG--TKLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVY 207

Query: 177 TIAGY 181
             + Y
Sbjct: 208 KSSYY 212

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 87.4 bits (215), Expect = 3e-22
 Identities = 48/189 (25%), Positives = 73/189 (38%), Gaps = 9/189 (4%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TGKLVE S+ +LV+C ++ S           +EY  + G+     YPY+  
Sbjct: 33  TVEGINKIRTGKLVELSEQELVDC-ERRSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAK 91

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
                  A       + T         +E          P+SV +      F        
Sbjct: 92  Q--GTCRAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF 149

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG----NNACGIE 176
                    + HAV  VGYGK     Y L +NSWG    ++G+ +I+R        CG+ 
Sbjct: 150 EGPCG--TKVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLY 207

Query: 177 TIAGYATID 185
             + Y T +
Sbjct: 208 KSSYYPTKN 216

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

 Score = 87.0 bits (214), Expect = 4e-22
 Identities = 46/185 (24%), Positives = 75/185 (40%), Gaps = 13/185 (7%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +E    I+TG L+  S+ +LV+C K+  GC G   +       +  G++++ +YPY+  
Sbjct: 33  TVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAV 92

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
            G    C     KV    G + + F     +K+ +                    + I  
Sbjct: 93  QG---PCQAAS-KVVSIDGYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFS 148

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIER--GNNACGIETI 178
                  N   H V +VGY       YW+ RNSWG    ++G+ ++ R  G   CGI  +
Sbjct: 149 GPCGTKLN---HGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARL 201

Query: 179 AGYAT 183
             Y T
Sbjct: 202 PYYPT 206

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

 Score = 86.2 bits (212), Expect = 7e-22
 Identities = 44/187 (23%), Positives = 76/187 (40%), Gaps = 10/187 (5%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +E    I+TG+L+  S+ +LV+C     GC G              G++++++YPY   
Sbjct: 33  AVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITNGGIDTQQNYPY--- 89

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
           +  +  C   + +V    G   +  N    ++  +                 +  + I  
Sbjct: 90  SAVQGSCKPYRLRVVSINGFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFT 149

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERG----NNACGIE 176
                + N   H V++VGYG Q    YW+ RNSWG    ++G+  +ER        CGI 
Sbjct: 150 GPCGTAQN---HGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIA 206

Query: 177 TIAGYAT 183
            +  Y T
Sbjct: 207 QLPSYPT 213

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.1 bits (209), Expect = 2e-21
 Identities = 54/189 (28%), Positives = 80/189 (42%), Gaps = 5/189 (2%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            LEGQ   KTGKLV  S+  LV+C++     G   G         +     + +  Y   
Sbjct: 33  ALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGFMARAFQYVKENGGLDSEESYPYV 92

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
             ++      ++ V   TG   +     + + K +   GP+SV ++     F        
Sbjct: 93  AVDEICKYRPENSVAQDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIY 152

Query: 121 NDEICSPNAIGHAVLLVGY----GKQDDIPYWLARNSWGPIGPDEGFFKIERG-NNACGI 175
            +  CS   + H VL+VGY       D+  YWL +NSWGP     G+ KI +  NN CGI
Sbjct: 153 FEPDCSSKNLDHGVLVVGYGFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGI 212

Query: 176 ETIAGYATI 184
            T A Y  +
Sbjct: 213 ATAASYPNV 221

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

 Score = 80.4 bits (197), Expect = 2e-19
 Identities = 42/188 (22%), Positives = 69/188 (36%), Gaps = 8/188 (4%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   IKT KLV  S+ +LV+C    +       ++   E+  Q G  + +       
Sbjct: 34  AVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIKQRGGITTEANYPYEA 93

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
                  + + +      G + +  N    + K +           G     +    +  
Sbjct: 94  YDGTCDVSKENAPAVSIDGHENVPENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFT 153

Query: 121 NDEICSPNAIGHAVLLVGYGKQDD-IPYWLARNSWGPIGPDEGFFKIERG----NNACGI 175
                    + H V +VGYG   D   YW  +NSWGP   ++G+ ++ERG       CGI
Sbjct: 154 G---SCGTELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210

Query: 176 ETIAGYAT 183
              A Y  
Sbjct: 211 AMEASYPI 218

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

 Score = 80.1 bits (196), Expect = 2e-19
 Identities = 45/189 (23%), Positives = 70/189 (37%), Gaps = 13/189 (6%)

Query: 1   MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNG 60
            +EG   I+TG L E+S+ +L++C ++  GC         ++   Q G+     YPY   
Sbjct: 33  TIEGIIKIRTGNLNEYSEQELLDCDRRSYGCN-GGYPWSALQLVAQYGIHYRNTYPYEGV 91

Query: 61  NGEKFKCAYDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKK 120
                         K    +    +N    +        P+SV L      F        
Sbjct: 92  QRYCRSREKGPYAAKTDGVRQVQPYNEGALLY--SIANQPVSVVLEAAGKDFQLYRGGIF 149

Query: 121 NDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNA----CGIE 176
                +     HAV  VGYG      Y L +NSWG    + G+ +I+RG       CG+ 
Sbjct: 150 VGPCGNKV--DHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLY 203

Query: 177 TIAGYATID 185
           T + Y   +
Sbjct: 204 TSSFYPVKN 212

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

 Score = 40.3 bits (94), Expect = 5e-05
 Identities = 9/38 (23%), Positives = 16/38 (42%), Gaps = 3/38 (7%)

Query: 132 HAVLLVGYGKQDD---IPYWLARNSWGPIGPDEGFFKI 166
           HA+L+ G    +       +   NSWG     +G + +
Sbjct: 374 HAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVM 411

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 132 HAVLLVGYGKQDD----IPYWLARNSWGPIGPDEGFF 164
           HA+      ++DD       W   NSWG     +G+ 
Sbjct: 371 HAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYL 407

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	187
d1m6da_	214	Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1cs8a_	316	(Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960	100.0
d1xkga1	302	Major mite fecal allergen der p 1 {House-dust mite	100.0
g8pch.1	228	Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]}	100.0
d2r6na1	215	(Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960	100.0
d2h7ja1	217	(Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960	100.0
g1k3b.1	233	Cathepsin C (dipeptidyl peptidase I), catalytic do	100.0
d2oula1	241	Falcipain 2 {Plasmodium falciparum [TaxId: 5833]}	100.0
d1me4a_	215	Cruzain {Trypanosoma cruzi [TaxId: 5693]}	100.0
d1ppoa_	216	Caricain (protease omega) {Papaya (Carica papaya)	100.0
d1yala_	218	Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1cqda_	216	Proline-specific cysteine protease {Ginger rhizome	100.0
d1deua_	275	(Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960	100.0
d1gmya_	254	(Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960	100.0
d1fh0a_	221	(Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960	100.0
d1aeca_	218	Actinidin {Chinese gooseberry or kiwifruit (Actini	100.0
d1khqa_	212	Papain {Papaya (Carica papaya) [TaxId: 3649]}	100.0
d1iwda_	215	Ervatamin B {Adam's apple (Ervatamia coronaria) [T	100.0
d1s4va_	224	Vignain (bean endopeptidase) {Castor bean (Ricinus	100.0
d1o0ea_	208	Ervatamin C {East indian rosebay (Ervatamia corona	100.0
d3gcba_	458	Bleomycin hydrolase {Baker's yeast (Saccharomyces	99.15
d2cb5a_	453	Bleomycin hydrolase {Human (Homo sapiens) [TaxId:	98.79
d1pxva_	183	Staphopain SspB {Staphylococcus aureus [TaxId: 128	86.0
d1cv8a_	173	Staphopain StpA {Staphylococcus aureus [TaxId: 128	83.21

>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cathepsin F
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-47  Score=298.80  Aligned_cols=180  Identities=34%  Similarity=0.703  Sum_probs=153.1

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCc-ccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAG-LESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~G-i~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||+++++++++.++||+|+|+||...+.+|.|+. +..+++++++.| ++.|.++||.   +....|.........++.
T Consensus        33 ~le~~~~~~~~~~~~~S~q~~~~c~~~~~gc~G~~-~~~~~~~~~~~g~~~~e~~~py~---~~~~~~~~~~~~~~~~~~  108 (214)
T d1m6da_          33 NVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGL-PSNAYSAIKNLGGLETEDDYSYQ---GHMQSCQFSAEKAKVYIQ  108 (214)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCCCGGGCCBCCS
T ss_pred             HHHHHHHHHcCCCcccCHHHhccccccCCccCCCc-chhhHHHHHhCCccccccccccc---CccCcccccccccceeee
Confidence            47999999999999999999999999899999999 999999966554 8899999999   777777655555555555


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCCCC
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIG  158 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~W  158 (187)
                       .+.... +..+||++|++.|||+++|.+..|+++..|++....+.++...++|||+|||||++++++|||||||||++|
T Consensus       109 -~~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~HaV~iVGyg~~~~~~ywivkNSWG~~W  187 (214)
T d1m6da_         109 -DSVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDW  187 (214)
T ss_dssp             -EEEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGSCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTS
T ss_pred             -cccccccCHHHHHHHHHhcCCeEEEEEEEehhhccCCccccccCCCCCcccceeEEEEcccccCCceEEEEECCCCCcc
Confidence             555444 899999999999999999999555555555544322556666799999999999999999999999999999


Q ss_pred             CCCcEEEEEecCCeecccceeeEEEEE
Q psy274          159 PDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       159 G~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      ||+|||||+|+.|.|||++++++|+||
T Consensus       188 Gd~Gy~~i~~g~n~cgI~~~~~~~~~~  214 (214)
T d1m6da_         188 GEKGYYYLHRGSGACGVNTMASSAVVD  214 (214)
T ss_dssp             TBTTEEEEESSSCGGGTTTTCEEEECC
T ss_pred             ccCCEEEEEcCCCcccccceeeEEecC
Confidence            999999999999999999999999986

>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.4e-48  Score=316.53  Aligned_cols=177  Identities=33%  Similarity=0.667  Sum_probs=157.0

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHhC-cccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQA-GLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      ++|+++++++++.+.||+|+|+||+..  +.+|.||+ +..||+|++.. ++++|..+||.   +....|.........+
T Consensus       129 ~~E~~~~i~~~~~~~lS~Q~lvdC~~~~~~~~c~gg~-~~~a~~y~~~~g~~~~e~~~~~~---~~~~~~~~~~~~~~~~  204 (316)
T d1cs8a_         129 ALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGL-MDYAFQYVQDNGGLDSEESYPYE---ATEESCKYNPKYSVAN  204 (316)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEEC
T ss_pred             HHHHHHHhhcCCcccchhhhhhhccccccCCCCCCCc-hHHHHHHHHhcCccccccccccc---cccccccccccccccc
Confidence            489999999999999999999999865  78899999 99999996555 57889999999   7778887666666666


Q ss_pred             eccceeEeC-ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeec----CCccEEEE
Q psy274           78 TGKDFLYFN-GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ----DDIPYWLA  150 (187)
Q Consensus        78 i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~----~g~~ywiv  150 (187)
                      +. .+.... +.+.|+++|+..|||++++++  +.|+.|++|||..  +.|+...++|||+|||||++    ++.+||||
T Consensus       205 ~~-~~~~~~~~~~~l~~~l~~~gpv~v~i~~~~~~f~~y~~Gi~~~--~~c~~~~~nHaV~iVGyG~d~~~~~g~~YWIi  281 (316)
T d1cs8a_         205 DA-GFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE--PDCSSEDMDHGVLVVGYGFESTESDNNKYWLV  281 (316)
T ss_dssp             CC-CEEECCSCHHHHHHHHHHHCCEEEEECCCSHHHHTEEEEEECC--TTCCSSCCCEEEEEEEEEEECCSSCCEEEEEE
T ss_pred             cc-ccccccCcHHHHHHHHHHhCCeEEEEEeccchhccccCCcccC--CCCCCCcCCEEEEEEEEcccccCCCCCeEEEE
Confidence            66 776666 899999999999999999988  5899999999988  78887778999999999964    68899999


Q ss_pred             EccCCCCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          151 RNSWGPIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       151 kNSWG~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      |||||++|||+|||||+|+. |.|||++.++||+|
T Consensus       282 kNSWG~~WGe~GY~ri~r~~~n~CGI~~~~~yP~v  316 (316)
T d1cs8a_         282 KNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV  316 (316)
T ss_dssp             ECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             EeCCCCCcccCCEEEEeeCCCCcCccCCeeeeeeC
Confidence            99999999999999999985 89999999999985

>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

Probab=100.00  E-value=1.5e-47  Score=313.36  Aligned_cols=176  Identities=22%  Similarity=0.406  Sum_probs=154.1

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCcceeeecc
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTGK   80 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~   80 (187)
                      ++|+++++++++.++||+|+|+||+. +.+|.||+ +..|++|+++.|+++|++|||.   ...+.|..... ..+++. 
T Consensus       119 ~lE~~~~i~~~~~~~lS~q~lvdC~~-~~~C~gG~-~~~a~~~~~~~Gi~~e~~yPY~---~~~~~C~~~~~-~~~~~~-  191 (302)
T d1xkga1         119 ATESAYLAYRDQSLDLAEQELVDCAS-QHGCHGDT-IPRGIEYIQHNGVVQESYYRYV---AREQSCRRPNA-QRFGIS-  191 (302)
T ss_dssp             HHHHHHHHHHCCCCCBCHHHHHHHTC-SSTTBCCC-HHHHHHHHHHHCEEBGGGSCCC---SSCCCCCCCSS-CEECCS-
T ss_pred             hHHHHHHHhcCCcccchhHHHHhccc-cCccCCCc-cchhhhhhccCcccchhhcccc---ccccccccccc-ccceee-
Confidence            58999999999999999999999986 78999999 9999999888999999999999   88889986443 456677 


Q ss_pred             ceeEeC--ChHHHHHHHHhCC-CEEEEEE--C-ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccC
Q psy274           81 DFLYFN--GSETMKKILYKYG-PLSVGLN--G-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSW  154 (187)
Q Consensus        81 ~~~~i~--~~~~ik~~l~~~g-PV~v~~~--~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW  154 (187)
                      +|..+.  +.++|+++|+..+ |+++.+.  . +.|+.|++|++..  +.|+...++|||+|||||+++|.+||||||||
T Consensus       192 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~y~~gi~~~--~~~~~~~~~HaV~iVGyg~~~g~~YWivkNSW  269 (302)
T d1xkga1         192 NYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQ--RDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSW  269 (302)
T ss_dssp             EEEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCBC--CCCSSCCEEEEEEEEEEEEETTEEEEEEECSB
T ss_pred             eeeeecCchHHHHHHhhhhcccccceeecccccchhhccccceeec--CCCCCCcCCEEEEEEEEeccCCeEEEEEEcCC
Confidence            777765  8889999998644 4444443  3 5788999999887  67877778899999999999999999999999


Q ss_pred             CCCCCCCcEEEEEecCCeecccceeeEEEEE
Q psy274          155 GPIGPDEGFFKIERGNNACGIETIAGYATID  185 (187)
Q Consensus       155 G~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~~  185 (187)
                      |++||++|||||+|+.|.|||++++++|+|+
T Consensus       270 G~~WGe~GY~~i~~~~n~cgi~~~~~~~~~~  300 (302)
T d1xkga1         270 DTNWGDNGYGYFAANIDLMMIEEYPYVVILG  300 (302)
T ss_dssp             CTTSTBTTEEEEECSSCGGGTTTCCEEEECT
T ss_pred             CCchhcCCEEEEECCCCeeccCCCcEEEEec
Confidence            9999999999999999999999999999874

>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin K
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.8e-46  Score=289.89  Aligned_cols=177  Identities=32%  Similarity=0.679  Sum_probs=157.7

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCc-ccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAG-LESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~G-i~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      |+|+++++++++.++||+|+|++|.....+|.|+. ...|+++++..| +.+|..|||.   .....|...+.....++.
T Consensus        33 ~~e~~~~~~~~~~~~lS~q~l~~c~~~~~~c~G~~-~~~a~~~~~~~g~~~~~~~y~~~---~~~~~~~~~~~~~~~~~~  108 (215)
T d2r6na1          33 ALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGY-MTNAFQYVQKNRGIDSEDAYPYV---GQEESCMYNPTGKAAKCR  108 (215)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCGGGCCC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEECCC
T ss_pred             HHHHHHHHHhCCCccchhhhhhhcccccCccCCcc-hhhHHHHHHhcCccccccCCCcc---cccccccccccccceeec
Confidence            57999999999999999999999998888999999 999999965545 8999999998   666666665566666777


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       .+....  +.++||++|...|||++.+..  ++|+.|++||+..  ..|+...++|+|+|||||++.+++|||||||||
T Consensus       109 -~~~~~~~~~~~~ik~~~~~~g~v~~~~~~~~~~f~~y~~gi~~~--~~~~~~~~~Hav~iVGy~~~~~~~ywivrNSWG  185 (215)
T d2r6na1         109 -GYREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWG  185 (215)
T ss_dssp             -EEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCTTCCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             -ceeeccccHHHHHHHhhcccccEEEEEEeeechhcccCCCcccC--CCCCCCCCCeeEEEEEeeccCCCcEEEEEcCCC
Confidence             777766  899999999999999998866  7899999999987  677777899999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          156 PIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      ++|||+|||||+|+. |.|||++++.||.|
T Consensus       186 ~~WGe~Gy~~i~~~~~n~Cgi~~~~~~p~~  215 (215)
T d2r6na1         186 ENWGNKGYILMARNKNNACGIANLASFPKM  215 (215)
T ss_dssp             TTSTBTTEEEEESSSSSGGGTTSSCEEEEC
T ss_pred             CCcccCCeEEEEeCCCCcCcccCccccccC
Confidence            999999999999996 89999999999975

>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin S
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-45  Score=287.23  Aligned_cols=176  Identities=32%  Similarity=0.677  Sum_probs=156.7

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC---CCCCCCCccchhhHHH-HHhCcccccccccccCCCCCcccccCCCCccee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ---CSGCGGCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKL   76 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~---~~gC~gG~~~~~a~~~-~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~   76 (187)
                      |||++++|+++..+.||+|+|++|...   +.+|+||+ +..|+.+ ++..|++++.+|||.   .....|.........
T Consensus        33 ~~e~~~~i~~~~~~~~S~~~~~~~~~~~~~~~gc~gg~-~~~a~~~~~~~~g~~~~~~~p~~---~~~~~~~~~~~~~~~  108 (217)
T d2h7ja1          33 ALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGF-MTTAFQYIIDNKGIDSDASYPYK---AMDQKCQYDSKYRAA  108 (217)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCTTBCCC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEE
T ss_pred             HHHHHHHHHhCCCCcccHHHhhhhhcccccCCCCCCCc-ccceeeehhhcccccccccCCCc---ccccccccccccccc
Confidence            479999999999999999999999865   78999999 9999988 778899999999999   666667666666777


Q ss_pred             eeccceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEc
Q psy274           77 FTGKDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARN  152 (187)
Q Consensus        77 ~i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN  152 (187)
                      ++. .+....  .+..||++|+..|||++++..  .+|..|++|||..  + +....++|||+|||||++.+++||||||
T Consensus       109 ~~~-~~~~~~~~~~~~~~~~l~~~g~v~~~~~~~~~~f~~~~~gi~~~--~-~~~~~~~Hav~iVGy~~~~~~~ywivrN  184 (217)
T d2h7ja1         109 TCS-KYTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYE--P-SCTQNVNHGVLVVGYGDLNGKEYWLVKN  184 (217)
T ss_dssp             CCC-EEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSCBCC--T-TCCSCCCEEEEEEEEEEETTEEEEEEEC
T ss_pred             eee-eeeccCccHHHHHHHHhhcCceEEEEEeeehhhhcccCCcceeC--C-CCCCCCCeEEEEEecccCCCceEEEEEc
Confidence            777 787776  788999999999999999876  6899999999987  3 3344689999999999999999999999


Q ss_pred             cCCCCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          153 SWGPIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      |||+.||++|||||+|+. |.||||++++||+|
T Consensus       185 SWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~  217 (217)
T d2h7ja1         185 SWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI  217 (217)
T ss_dssp             SBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred             CCCCCcccCCEEEEecCCCCcCCccccccceeC
Confidence            999999999999999987 99999999999986

>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Cruzain
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=4.7e-45  Score=284.08  Aligned_cols=175  Identities=26%  Similarity=0.518  Sum_probs=151.6

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHH-H--hCcccccccccccCCCCCcccccC---CCCcc
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYT-H--QAGLESEKDYPYRNGNGEKFKCAY---DKSKV   74 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~-~--~~Gi~~e~~yPY~~~~~~~~~C~~---~~~~~   74 (187)
                      +||++++|+++...+||+|+|++|...+.+|.++. ...++.++ .  ..+++++.+|||.   .....|..   .....
T Consensus        33 ~le~~~~i~~~~~~~ls~q~l~~c~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~ypy~---~~~~~~~~~~~~~~~~  108 (215)
T d1me4a_          33 NVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGL-MNNAFEWIVQENNGAVYTEDSYPYA---SGEGISPPCTTSGHTV  108 (215)
T ss_dssp             HHHHHHHHTTSCCCCBCHHHHHHHCTTSCGGGCCC-HHHHHHHHHHHSTTEEEBTTTSCCC---CTTSCCCCCCCSSCCE
T ss_pred             HHHHHHHHhcCCCcccchhhhhhhhcCCCCCCCCc-ccccceeeeeccCCccccCcccCcc---cccccccccccccccc
Confidence            47999999999999999999999998888899888 88888883 2  3478999999999   44444443   33345


Q ss_pred             eeeeccceeEeC-ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEcc
Q psy274           75 KLFTGKDFLYFN-GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNS  153 (187)
Q Consensus        75 ~~~i~~~~~~i~-~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNS  153 (187)
                      ..++. .+..+. +.+.||++|+++|||++.+.+..|+.|+++++..    |....++|||+|||||++++.+|||||||
T Consensus       109 ~~~~~-~~~~~~~~~~~ik~~i~~~gpv~~~~~~~~~~~~~~~~~~~----~~~~~~~Hav~IVGyg~~~~~~ywivrNS  183 (215)
T d1me4a_         109 GATIT-GHVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS----CVSEQLDHGVLLVGYNDSAAVPYWIIKNS  183 (215)
T ss_dssp             EEECC-EEEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECS----CCCSCCCEEEEEEEEESSSSSCEEEEECS
T ss_pred             ceEee-eeeeccccHHHHHHHHHhcCceeEEEEeeeecccccccccC----CccccceeEEEEEEccccCCceEEEEEcC
Confidence            56777 777777 8999999999999999999997799999999866    44456899999999999999999999999


Q ss_pred             CCCCCCCCcEEEEEecCCeecccceeeEEEE
Q psy274          154 WGPIGPDEGFFKIERGNNACGIETIAGYATI  184 (187)
Q Consensus       154 WG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~  184 (187)
                      ||++||++|||||+|+.|.||||+++.+|+|
T Consensus       184 WG~~WGd~Gy~~i~~g~n~cgI~~~~~~~~~  214 (215)
T d1me4a_         184 WTTQWGEEGYIRIAKGSNQCLVKEEASSAVV  214 (215)
T ss_dssp             BCTTSTBTTEEEEESSSCGGGTTSSEEEEEC
T ss_pred             CCCCcccCCEEEEECCCCccccCCceeeEec
Confidence            9999999999999999999999999999985

>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Caricain (protease omega)
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=2.5e-45  Score=285.85  Aligned_cols=175  Identities=30%  Similarity=0.570  Sum_probs=148.8

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCCCCc-ceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYDKSK-VKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~-~~~~i~   79 (187)
                      ++|+++++++++.++||+|+|+||.....+|.|+. +..+++++++.|+++|++|||.   .....|...... ....+.
T Consensus        33 ~~e~~~~~~~~~~~~lS~q~l~~~~~~~~~~~G~~-~~~~~~~~~~~G~~~e~~yPy~---~~~~~~~~~~~~~~~~~~~  108 (216)
T d1ppoa_          33 TVEGINKIRTGKLVELSEQELVDCERRSHGCKGGY-PPYALEYVAKNGIHLRSKYPYK---AKQGTCRAKQVGGPIVKTS  108 (216)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCC-HHHHHHHHHHHCBCBTTTSCCC---SSCCCCCGGGCCSCCBCCC
T ss_pred             HHHHHHHHHhCCCCCccHHHHhhhhhccCcccccc-cccccccccccCccccccCCcc---ccccccccccccccceeec
Confidence            47999999999999999999999998899999999 9999999999999999999999   777777654432 333334


Q ss_pred             cceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCC
Q psy274           80 KDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWG  155 (187)
Q Consensus        80 ~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG  155 (187)
                       .+..+.  .++.||++|.+ |||++.+.+  +.|+.|++|+|..   ++.. .++|||+|||||++++++|||||||||
T Consensus       109 -~~~~~~~~~~~~~~~~l~~-gpv~~~~~~~~~~~~~y~~g~~~~---~~~~-~~~Hav~iVGyg~~~~~~ywivrNSWG  182 (216)
T d1ppoa_         109 -GVGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG---PCGT-KVDHAVTAVGYGKSGGKGYILIKNSWG  182 (216)
T ss_dssp             -EEEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECC---SCCS-CCCEEEEEEEEEEETTEEEEEEECSBC
T ss_pred             -cceeecccHHHHHHHHHhh-CCCceeeeeccccceecCCccccc---cccc-cCCcEEEEEeccccCCCceEEEECCCC
Confidence             444444  66777777765 999999988  5678999999977   3333 479999999999999999999999999


Q ss_pred             CCCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          156 PIGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       156 ~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      ++||++|||||+|+.    |.|||++.++||+.+
T Consensus       183 ~~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  216 (216)
T d1ppoa_         183 TAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN  216 (216)
T ss_dssp             SSSTBTTEEEEECCCSSSSCGGGTTSCCEEEECC
T ss_pred             CCcccCCEEEEEcCCCCCCCcCccccEeeeeecC
Confidence            999999999999986    569999999999863

>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Chymopapain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=3.9e-45  Score=285.24  Aligned_cols=176  Identities=30%  Similarity=0.548  Sum_probs=151.3

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCccc-ccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFK-CAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~i~   79 (187)
                      +||++++++++..+.||+|+|+||...+.+|.++. +..++.++++.|+++|+++||.   ..... |.........++.
T Consensus        33 ~~e~~~~~~~~~~~~lS~q~l~~c~~~~~g~~g~~-~~~~~~~~~~~g~~~e~~~py~---~~~~~~~~~~~~~~~~~~~  108 (218)
T d1yala_          33 TVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGY-QTTSLQYVANNGVHTSKVYPYQ---AKQYKCRATDKPGPKVKIT  108 (218)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHCBCBTTTSCCC---SSCCCCCGGGCCSCCBCCS
T ss_pred             HHHHHHHHHcCCCcccchhhhhccccccCCCcccc-cchhhhhhhhhcccccccCCcc---cccCccccccccccceeec
Confidence            47999999999999999999999999899999999 9999999889999999999999   54443 3333344556677


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP  156 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~  156 (187)
                       .+..+. +.++++++|+..+||++++.+  +.|+.|++|||..   ++.. .++|||+|||||++++++|||||||||+
T Consensus       109 -~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~Giy~~---~~~~-~~~Hav~IVGyg~~~g~~ywivkNSWG~  183 (218)
T d1yala_         109 -GYKRVPSNCETSFLGALANQPLSVLVEAGGKPFQLYKSGVFDG---PCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGP  183 (218)
T ss_dssp             -EEEECCSSBHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC---SCCS-CCCEEEEEEEEEEETTEEEEEEECSBCT
T ss_pred             -cceEeCCccHHHHHHHHHhCCceEEEEecccchhhcccceeee---cccc-cCCcEEEEEEeeccCCceEEEEECCCCC
Confidence             777777 666777777788999999998  5788999999987   3433 4799999999999999999999999999


Q ss_pred             CCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          157 IGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       157 ~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      +||++|||||+|+.    |.|||++.++||+..
T Consensus       184 ~WGd~Gy~~I~~~~~~~~~~CGI~~~~~~p~~~  216 (218)
T d1yala_         184 NWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKG  216 (218)
T ss_dssp             TSTBTTEEEEECCCSBSCCGGGTTSSCEEEECC
T ss_pred             CcccCCEEEEEccCCCCCCcCCccceeeeccCC
Confidence            99999999999986    679999999999853

>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Proline-specific cysteine protease
species: Ginger rhizome (Zingiber officinale) [TaxId: 94328]

Probab=100.00  E-value=2.4e-44  Score=279.84  Aligned_cols=174  Identities=28%  Similarity=0.554  Sum_probs=152.8

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCc-ccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAG-LESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~G-i~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++++++..++||+|+|++|+....||.||+ +..|++|+++.| +..|++|||.   +....|.........++.
T Consensus        33 ~le~~~~~~~~~~~~lS~q~l~~c~~~~~gc~Gg~-~~~a~~y~~~~g~~~~e~~~p~~---~~~~~~~~~~~~~~~~~~  108 (216)
T d1cqda_          33 AVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGW-MNPAFQFIVNNGGINSEETYPYR---GQDGICNSTVNAPVVSID  108 (216)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHTSBCBTTTSCCC---SSCCCCCSSSCCCSBCCS
T ss_pred             HHHHHHHHHhCCCccccHHHhhhcccccCCCCCcc-hHHHHHHHHhcCCccccccCCcc---ccccccccccCCceeEee
Confidence            48999999999999999999999998889999999 999999965555 6678999999   777777766666777778


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP  156 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~  156 (187)
                       .|..+. +.++++..|...+|+++++.+  +.|..|++|||..    +....++|||+|||||++++++|||||||||+
T Consensus       109 -~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~gi~~~----~~~~~~~Hav~iVGyg~~~~~~~wiv~NSWG~  183 (216)
T d1cqda_         109 -SYENVPSHNEQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG----SCNISANHALTVVGYGTENDKDFWIVKNSWGK  183 (216)
T ss_dssp             -EEEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC----CCCCCCCEEEEEEEEEEETTEEEEEEECSBCT
T ss_pred             -eEEecCCcchhhHHHHhhcCCcceeeeeecccccccccCcccc----cccccCCcceeeeccccccCCceEEEECCCCC
Confidence             888877 667777778888999999988  6899999999976    34446899999999999999999999999999


Q ss_pred             CCCCCcEEEEEecC----CeecccceeeEEE
Q psy274          157 IGPDEGFFKIERGN----NACGIETIAGYAT  183 (187)
Q Consensus       157 ~WG~~Gy~~i~~~~----n~cgi~~~~~~~~  183 (187)
                      +||++|||||+|+.    |.|||++++++|+
T Consensus       184 ~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~  214 (216)
T d1cqda_         184 NWGESGYIRAERNIENPDGKCGITRFASYPV  214 (216)
T ss_dssp             TSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             ccccCCEEEEEcCCCCCCCCCCccceeeeee
Confidence            99999999999985    6799999999996

>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin X
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-45  Score=295.47  Aligned_cols=174  Identities=25%  Similarity=0.477  Sum_probs=148.5

Q ss_pred             CchhhHHHHhCC---CccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCccccc---------
Q psy274            1 MLEGQYAIKTGK---LVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCA---------   68 (187)
Q Consensus         1 a~E~~~~i~~~~---~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~---------   68 (187)
                      +||++++|+++.   ...||+|+|++|.. ..+|.||+ +..|++++++.|+++|++|||.   .....|.         
T Consensus        72 ~lE~~~~i~~~~~~~~~~lS~q~l~~~~~-~~~c~GG~-~~~a~~~~~~~G~~~e~~~PY~---~~~~~~~~~~~~~~~~  146 (275)
T d1deua_          72 AMADRINIKRKGAWPSTLLSVQNVIDCGN-AGSCEGGN-DLSVWDYAHQHGIPDETCNNYQ---AKDQECDKFNQCGTCN  146 (275)
T ss_dssp             HHHHHHHHHTTTCSSCCCBCHHHHHHHSS-SEETBEEC-HHHHHHHHHHTCBCBGGGSCCC---SSCCCCCHHHHSEEEE
T ss_pred             HHHHHHHHHcCCcccccccchhheecccc-ccccCCcc-cccccchhhccccccccccccc---ccCCCcccccccCccc
Confidence            489999998774   46699999999987 56999999 9999999999999999999998   4333321         


Q ss_pred             ------CCCCcceeeeccceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCCCCCcccEEEEEEEEee
Q psy274           69 ------YDKSKVKLFTGKDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK  141 (187)
Q Consensus        69 ------~~~~~~~~~i~~~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~  141 (187)
                            .......+++. +|..+.+.+.||++|+++|||+++|++ ++|++|++|||..   .++...++|||+|||||+
T Consensus       147 ~~~~~~~~~~~~~~~i~-~~~~~~~~e~ik~~l~~~GPv~v~~~~~~~f~~y~~Gi~~~---~~~~~~~~HAV~IVGyg~  222 (275)
T d1deua_         147 EFKECHAIRNYTLWRVG-DYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAE---YQDTTYINHVVSVAGWGI  222 (275)
T ss_dssp             ETTEEEECSSCCCBCEE-EEEEECSHHHHHHHHHHHCCEEEEECCCHHHHTCCSSEECB---CCSCCCCCEEEEEEEEEE
T ss_pred             ccceeeeccceeEEEeC-ceeecCcHHHHHHHHHhCCCcEEEEEeccchhccCCCcccC---ccccccCCeEEEEEEEec
Confidence                  12223445666 777777889999999999999999999 8999999999987   465667899999999999


Q ss_pred             cCCccEEEEEccCCCCCCCCcEEEEEecCCeec--------ccceeeEEE
Q psy274          142 QDDIPYWLARNSWGPIGPDEGFFKIERGNNACG--------IETIAGYAT  183 (187)
Q Consensus       142 ~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cg--------i~~~~~~~~  183 (187)
                      +++++|||||||||++||++|||||+|+.|.||        ||++++++.
T Consensus       223 ~~g~~ywivrNSWG~~WGd~Gyf~I~~~~~~~~~~~~~~~~ie~~~~~~~  272 (275)
T d1deua_         223 SDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTFGD  272 (275)
T ss_dssp             ETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTTTTSCEEEEE
T ss_pred             cCCcEEEEEECCCCCCcccCCEEEEECCCCCCCccccccccccCccEecC
Confidence            999999999999999999999999999986665        999999954

>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-44  Score=287.59  Aligned_cols=180  Identities=26%  Similarity=0.456  Sum_probs=144.3

Q ss_pred             CchhhHHHHhCC--CccCCHHHHhhhcCC--CCCCCCCccchhhHHHHHhCcccccccccccCCC-------------CC
Q psy274            1 MLEGQYAIKTGK--LVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGN-------------GE   63 (187)
Q Consensus         1 a~E~~~~i~~~~--~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~-------------~~   63 (187)
                      +||++++|+++.  ..+||+|+|++|...  +.+|+||+ +..|++++.+.|+++|+.||+....             +.
T Consensus        38 ~lEs~~~i~~~~~~~~~lS~~~l~~~~~~~~~~gc~gg~-~~~a~~~~~~~G~~~e~~~~~~~~~~~~~~~~~~~~~~~~  116 (254)
T d1gmya_          38 AISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGY-PAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGS  116 (254)
T ss_dssp             HHHHHHHHHTTTSSCCCBCHHHHHHHSGGGGBCGGGCBC-HHHHHHHHHHTCBCBCCSTTCCCSSSCCCSCCCBSSSCCS
T ss_pred             HHHHHHHHHHCCCCccccchHHHHhhccccCCCCCCCCc-HHHHHHHHHHcCccccccccccccccccccccccccccCc
Confidence            589999999886  578999999999754  78999999 9999999889999999999876311             11


Q ss_pred             cccccCCCC------------cc---eeeec--cceeEeCChHHHHHHHHhCCCEEEEEEC-ccccccCCceeeCCCCCC
Q psy274           64 KFKCAYDKS------------KV---KLFTG--KDFLYFNGSETMKKILYKYGPLSVGLNG-HLIHFYNGTPIKKNDEIC  125 (187)
Q Consensus        64 ~~~C~~~~~------------~~---~~~i~--~~~~~i~~~~~ik~~l~~~gPV~v~~~~-~~f~~y~~giy~~~~~~~  125 (187)
                      ...|.....            ..   ..+..  ..+....+++.||++|+.+|||+++|.+ ++|+.|++|++..   .+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~l~~~gpv~~~~~~~~~f~~y~~gi~~~---~~  193 (254)
T d1gmya_         117 RPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQH---VT  193 (254)
T ss_dssp             SCBCCSCCCCCCCCCSCCTTCCSCHHHHCBCBSCCEECCSCHHHHHHHHHHHCCEEEEEEEEGGGTTCCSSEECC---CS
T ss_pred             cCccccccCCccccccccCCcccceeeeeeeeeeeeccccHHHHHHHHHHHcCCEEEEEEeechhhhccCCcccc---cc
Confidence            111211100            00   00111  0111112788999999999999999999 9999999999977   56


Q ss_pred             CCCcccEEEEEEEEeecCCccEEEEEccCCCCCCCCcEEEEEecCCeecccceeeEEEE
Q psy274          126 SPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKIERGNNACGIETIAGYATI  184 (187)
Q Consensus       126 ~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~n~cgi~~~~~~~~~  184 (187)
                      ....++|||+|||||++++.+|||||||||++||++|||||+|+.|.||||++++++..
T Consensus       194 ~~~~~~Hav~IVGyg~~~g~~ywIvkNSWG~~WGd~GYf~i~~~~n~cgi~~~~~~~~p  252 (254)
T d1gmya_         194 GEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIP  252 (254)
T ss_dssp             CCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCB
T ss_pred             ccccccEEEEEEEEeccCCceEEEEEcCCCCCcCCCceEEEEcCCCccCcCCceEeccC
Confidence            66678999999999999999999999999999999999999999999999999999864

>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin V
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-44  Score=278.42  Aligned_cols=177  Identities=36%  Similarity=0.691  Sum_probs=153.2

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHH-hCcccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      +||++++++++..+.||+|+|++|...  +.+|+||+ +..|++++. ..+++++.+|||.   .....|.........+
T Consensus        33 ~~e~~~~~~~~~~~~lS~~~~~~~~~~~~~~~~~gg~-~~~a~~~~~~~g~~~~~~~~p~~---~~~~~~~~~~~~~~~~  108 (221)
T d1fh0a_          33 ALEGQMFRKTGKLVSLSEQNLVDCSRPQGNQGCNGGF-MARAFQYVKENGGLDSEESYPYV---AVDEICKYRPENSVAQ  108 (221)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCCC-HHHHHHHHHHHTCEEBTTTSCCC---SSCCCCCCCGGGEEEC
T ss_pred             HHHHHHHHHcCCCcccccceeEEeccccCCcccCCCc-hhhhhhhhhhcCccccccCcCcc---cccccccccccccccc
Confidence            479999999999999999999999765  78899999 999999954 5558999999999   6666666555555666


Q ss_pred             eccceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEee----cCCccEEE
Q psy274           78 TGKDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGK----QDDIPYWL  149 (187)
Q Consensus        78 i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~----~~g~~ywi  149 (187)
                      +. .+....  ...++|++|+.++||++++.+  +.|+.|++|++..  +.+....++|+++|||||.    +++.+|||
T Consensus       109 ~~-~~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~y~~g~~~~--~~~~~~~~~ha~~ivG~g~~~~~~~~~~ywi  185 (221)
T d1fh0a_         109 DT-GFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFE--PDCSSKNLDHGVLVVGYGFEGANSDNSKYWL  185 (221)
T ss_dssp             CS-CEEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--TTCCSSCCCEEEEEEEEEESSSCTTSSEEEE
T ss_pred             ce-eeeecCCcHHHHHHHHHHhcCCceEEEEeccccccccCCCcccc--ccccccCCcccEEEeeEeccCcCCCCceEEE
Confidence            66 666655  778899999999999999988  5799999999987  6677767899999999995    36788999


Q ss_pred             EEccCCCCCCCCcEEEEEecC-CeecccceeeEEEE
Q psy274          150 ARNSWGPIGPDEGFFKIERGN-NACGIETIAGYATI  184 (187)
Q Consensus       150 vkNSWG~~WG~~Gy~~i~~~~-n~cgi~~~~~~~~~  184 (187)
                      ||||||++|||+|||||+|+. |.|||+++++||+|
T Consensus       186 vrNSWG~~WGd~Gy~~i~~~~~n~CgI~~~~~yp~~  221 (221)
T d1fh0a_         186 VKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV  221 (221)
T ss_dssp             EECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEECC
T ss_pred             EEeCCCCCcccCCEEEEEeCCCCccccCCCcccccC
Confidence            999999999999999999985 89999999999975

>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Actinidin
species: Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]

Probab=100.00  E-value=2.5e-43  Score=274.62  Aligned_cols=175  Identities=31%  Similarity=0.610  Sum_probs=142.1

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC--CCCCCCCccchhhHHHHH-hCcccccccccccCCCCCcccccCCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ--CSGCGGCDGLEQPIEYTH-QAGLESEKDYPYRNGNGEKFKCAYDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~--~~gC~gG~~~~~a~~~~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~   77 (187)
                      +||++++++++..+.||+|+|++|...  +.+|.|+. ...++.+++ ..++++|.+|||.   .....|..........
T Consensus        33 ~~e~~~~~~~~~~~~lS~q~~~~c~~~~~~~~~~G~~-~~~~~~~~~~~g~v~~e~~yp~~---~~~~~~~~~~~~~~~~  108 (218)
T d1aeca_          33 TVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGY-ITDGFQFIINNGGINTEENYPYT---AQDGECNVDLQNEKYV  108 (218)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCCBTTBCTTBCCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCHHHHHCCCB
T ss_pred             HHHHHHHHhcCCCcchhhhhhhhhccccCCcccCCCc-ccccceeehhCceecCccccCcc---cccCccceeccccccc
Confidence            479999999999999999999999875  66788888 999999954 4459999999999   6566555433322233


Q ss_pred             eccceeEeC--ChHHHHHHHHhCCCEEEEEEC-cc-ccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEcc
Q psy274           78 TGKDFLYFN--GSETMKKILYKYGPLSVGLNG-HL-IHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNS  153 (187)
Q Consensus        78 i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~-~~-f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNS  153 (187)
                      .. .+....  +.+.||++|+..|||++++.+ .+ |..+++|++..   ++ ...++|||+|||||++++++|||||||
T Consensus       109 ~~-~~~~~~~~~~~~~~~~~~~~gpv~v~~~~~~~~~~~~~~g~~~~---~~-~~~~~Hav~iVGyg~~~~~~ywivrNS  183 (218)
T d1aeca_         109 TI-DTYENVPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTG---PC-GTAIDHAVTIVGYGTEGGIDYWIVKNS  183 (218)
T ss_dssp             CC-CEEEECCSSCHHHHHHHHHHSCEEEEECCCSHHHHHCCSSEECC---SC-CSSCCEEEEEEEEEEETTEEEEEEECS
T ss_pred             ee-cccccccccHHHHHHHHhhcCCceeEEEecchhhhcCCCCcccc---cc-cccCCceeEEEEEeccCCeEEEEEEcC
Confidence            33 333333  889999999999999999998 54 55666777765   33 335799999999999999999999999


Q ss_pred             CCCCCCCCcEEEEEec---CCeecccceeeEEEE
Q psy274          154 WGPIGPDEGFFKIERG---NNACGIETIAGYATI  184 (187)
Q Consensus       154 WG~~WG~~Gy~~i~~~---~n~cgi~~~~~~~~~  184 (187)
                      ||+.||++|||||+|+   .|+|||++.++||+.
T Consensus       184 WG~~WGd~Gy~~i~~~~~~~~~Cgi~~~~~~~~~  217 (218)
T d1aeca_         184 WDTTWGEEGYMRILRNVGGAGTCGIATMPSYPVK  217 (218)
T ss_dssp             BCTTSTBTTEEEEECCCSTTCGGGTTSSCEEEEC
T ss_pred             CCCCcccCCEEEEEeCCCCCcccccCCcceeccc
Confidence            9999999999999995   589999999999973

>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Papain
species: Papaya (Carica papaya) [TaxId: 3649]

Probab=100.00  E-value=6.1e-42  Score=265.12  Aligned_cols=172  Identities=30%  Similarity=0.517  Sum_probs=141.9

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCcccccccccccCCCCCcccccCC-CCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAGLESEKDYPYRNGNGEKFKCAYD-KSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~-~~~~~~~i~   79 (187)
                      ++|++++++++....||+|+++||.....+|+++. +..|++++++.|+++|+.+||.   +..+.|... ..+....+.
T Consensus        33 ~~e~~~~i~~~~~~~~S~q~~~~c~~~~~g~~g~~-~~~a~~~~~~~g~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~  108 (212)
T d1khqa_          33 TIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGY-PWSALQLVAQYGIHYRNTYPYE---GVQRYCRSREKGPYAAKTD  108 (212)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCBC-HHHHHHHHHHTCBCBTTTSCCC---SSCCCCCTTTTCSCSBCCC
T ss_pred             HHHHHHHHHcCCCcccCHHHhhccccccCcccccc-ccccccccccccccccccCCcc---cccCcccccccccceeeee
Confidence            47999999999999999999999998888999999 9999999999999999999999   655554433 333444455


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP  156 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~  156 (187)
                       .+.... ....++.++...+||++++.+  +.|..|++|+|..   ++.. .++|||+|||||    .+|||||||||+
T Consensus       109 -~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~g~~~~---~~~~-~~~Hav~iVGyg----~~ywivrNSWG~  179 (212)
T d1khqa_         109 -GVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG---PCGN-KVDHAVAAVGYG----PNYILIKNSWGT  179 (212)
T ss_dssp             -EEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECC---SCCS-CCCEEEEEEEEE----TTEEEEECSBCT
T ss_pred             -eeeeeccccHHHHHHHHhcCCcEEEEEeecchhcccccCcccc---cccc-ccCeEEEecccC----CcEEEEEcCCCC
Confidence             555555 445555555566999988877  6899999999976   3333 579999999998    359999999999


Q ss_pred             CCCCCcEEEEEecC----CeecccceeeEEEEE
Q psy274          157 IGPDEGFFKIERGN----NACGIETIAGYATID  185 (187)
Q Consensus       157 ~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~~  185 (187)
                      +||++|||||+|+.    |.|||++.++||+-|
T Consensus       180 ~WGd~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~  212 (212)
T d1khqa_         180 GWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN  212 (212)
T ss_dssp             TSTBTTEEEEECCSCCTTCGGGTTSCCEEEECC
T ss_pred             CcccCCEEEEEcCCCCCCCcCCcccEeeeeccC
Confidence            99999999999986    579999999999854

>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin B
species: Adam's apple (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=1.1e-41  Score=264.83  Aligned_cols=173  Identities=28%  Similarity=0.574  Sum_probs=143.8

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHHHHhCc-ccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEYTHQAG-LESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~~~~~G-i~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      +||++++++++..+.||+|+|+||.....+|.|+. ...|++++++.| +..+.++||.   .....|... .....++.
T Consensus        33 ~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~G~~-~~~a~~~~~~~g~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~  107 (215)
T d1iwda_          33 AVESINKIRTGQLISLSEQELVDCDTASHGCNGGW-MNNAFQYIITNGGIDTQQNYPYS---AVQGSCKPY-RLRVVSIN  107 (215)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCTT-CCCCBCCC
T ss_pred             HHHHHHHHhcCCCcccChhhheecccCCCCCCCcc-hhhHHHHHHhcCeeccccCCCcc---ccccccccc-ccceeEec
Confidence            48999999999999999999999998888999999 999999955444 6677778888   555555533 33556777


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP  156 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~  156 (187)
                       +|..+. +.++++++|...+||++.+.+  +.|..+++|+|..   +++. .++|||+|||||++++++|||||||||+
T Consensus       108 -~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~~~~~~~g~~~~---~~~~-~~~Hav~iVGyg~~~~~~ywiirNSWG~  182 (215)
T d1iwda_         108 -GFQRVTRNNESALQSAVASQPVSVTVEAAGAPFQHYSSGIFTG---PCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQ  182 (215)
T ss_dssp             -EEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECC---CCCC-CCCEEEEEEEEEEETTEEEEEEECSBCT
T ss_pred             -cccccCccHHHHHHHHHhcCCccceeeecchhhhccccCcccc---cccc-cccceEEEEEeecCCCceEEEEECCCCc
Confidence             888877 555666666666999999988  4666778888876   3433 4799999999999999999999999999


Q ss_pred             CCCCCcEEEEEecC----CeecccceeeEEE
Q psy274          157 IGPDEGFFKIERGN----NACGIETIAGYAT  183 (187)
Q Consensus       157 ~WG~~Gy~~i~~~~----n~cgi~~~~~~~~  183 (187)
                      +|||+|||||+|+.    |.|||++.+.+|+
T Consensus       183 ~WGd~Gy~~I~~~~~~~~~~CGi~~~~~~p~  213 (215)
T d1iwda_         183 NWGNQGYIWMERNVASSAGLCGIAQLPSYPT  213 (215)
T ss_dssp             TSTBTTEEEEECSCSSTTCGGGTTSSCEEEE
T ss_pred             ccccCCEEEEECCCCCCCCcCCccccceeec
Confidence            99999999999986    6799999999997

>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Vignain (bean endopeptidase)
species: Castor bean (Ricinus communis) [TaxId: 3988]

Probab=100.00  E-value=1.7e-41  Score=265.07  Aligned_cols=174  Identities=29%  Similarity=0.603  Sum_probs=142.4

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCC-CCCCCCCccchhhHHHH-HhCcccccccccccCCCCCccccc-CCCCcceee
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQ-CSGCGGCDGLEQPIEYT-HQAGLESEKDYPYRNGNGEKFKCA-YDKSKVKLF   77 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~-~~gC~gG~~~~~a~~~~-~~~Gi~~e~~yPY~~~~~~~~~C~-~~~~~~~~~   77 (187)
                      ++|+++++++++.+.||+|+|++|... ..+|.|++ ...|+.++ +..+++.|.++||.   ...+.|. ........+
T Consensus        34 ~~e~~~~~~~~~~~~~S~q~l~~c~~~~~~~~~G~~-~~~a~~~~~~~g~~~~e~~~~~~---~~~~~~~~~~~~~~~~~  109 (224)
T d1s4va_          34 AVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGL-MDYAFEFIKQRGGITTEANYPYE---AYDGTCDVSKENAPAVS  109 (224)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCHHHHTCCCBC
T ss_pred             HHHHHHHHhcCCCCccchhhhhhccccccccCCCCc-hhhHhhhHhhcCceeeccccccc---CcCCcccccccccccee
Confidence            479999999999999999999999876 56677777 99999994 56678888888888   5444443 223334455


Q ss_pred             eccceeEeC--ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeec-CCccEEEEEc
Q psy274           78 TGKDFLYFN--GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ-DDIPYWLARN  152 (187)
Q Consensus        78 i~~~~~~i~--~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~-~g~~ywivkN  152 (187)
                      +. .+..+.  +.+.||++|.+ +||++.+.+  ++|+.|.+|+|..    +....++|||+|||||++ ++++||||||
T Consensus       110 ~~-~~~~~~~~~~~~~k~~l~~-~pv~~~~~~~~~~~~~y~~g~~~~----~~~~~~~Hav~iVGy~~~~~g~~ywiikN  183 (224)
T d1s4va_         110 ID-GHENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFTG----SCGTELDHGVAIVGYGTTIDGTKYWTVKN  183 (224)
T ss_dssp             CC-EEEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC----CCCCCCCEEEEEEEEEECTTSCEEEEEEC
T ss_pred             ec-ccccccCccHHHHHHHHhc-CCceEEEEecchhhhhccCCCccC----cccccCCcceEEEecccccCCceEEEEEc
Confidence            55 666555  88899999987 788877776  6899999999976    334457999999999966 7899999999


Q ss_pred             cCCCCCCCCcEEEEEecC----CeecccceeeEEEE
Q psy274          153 SWGPIGPDEGFFKIERGN----NACGIETIAGYATI  184 (187)
Q Consensus       153 SWG~~WG~~Gy~~i~~~~----n~cgi~~~~~~~~~  184 (187)
                      |||+.||++|||||+|+.    |.|||+++++||+.
T Consensus       184 SWG~~WG~~Gy~~i~~g~~~~~n~CgI~~~~~yp~~  219 (224)
T d1s4va_         184 SWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIK  219 (224)
T ss_dssp             SBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEEC
T ss_pred             CCCCccccCceEEEECCCCCCCCcCCccceeeeeec
Confidence            999999999999999974    78999999999985

>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Ervatamin C
species: East indian rosebay (Ervatamia coronaria) [TaxId: 52861]

Probab=100.00  E-value=3.2e-41  Score=260.89  Aligned_cols=168  Identities=26%  Similarity=0.538  Sum_probs=140.0

Q ss_pred             CchhhHHHHhCCCccCCHHHHhhhcCCCCCCCCCccchhhHHH-HHhCcccccccccccCCCCCcccccCCCCcceeeec
Q psy274            1 MLEGQYAIKTGKLVEFSKSQLVECAKQCSGCGGCDGLEQPIEY-THQAGLESEKDYPYRNGNGEKFKCAYDKSKVKLFTG   79 (187)
Q Consensus         1 a~E~~~~i~~~~~~~lS~q~l~dc~~~~~gC~gG~~~~~a~~~-~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~   79 (187)
                      ++|++++++++..++||+|+|++|...+.+|.|+. +..++.+ +.+.++.++.++||.   .....|....  ...++.
T Consensus        33 ~le~~~~~~~~~~~~lS~q~l~~c~~~~~~~~g~~-~~~~~~~~~~~g~~~~~~~~p~~---~~~~~~~~~~--~~~~~~  106 (208)
T d1o0ea_          33 TVESINQIRTGNLISLSEQELVDCDKKNHGCLGGA-FVFAYQYIINNGGIDTQANYPYK---AVQGPCQAAS--KVVSID  106 (208)
T ss_dssp             HHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCC-HHHHHHHHHHHTCBCBTTTSCCC---SSCCCCCCCC--CCBCCC
T ss_pred             HHHHHHHHHhCCCCCcCHHHhhhhccCCCCCCCcc-chhhhhhhhhcCccccccCCCCc---ccCCCccCcc--cccccc
Confidence            47999999999999999999999998899999999 9999999 566678899999999   7777776543  345566


Q ss_pred             cceeEeC-ChHHHHHHHHhCCCEEEEEEC--ccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCC
Q psy274           80 KDFLYFN-GSETMKKILYKYGPLSVGLNG--HLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGP  156 (187)
Q Consensus        80 ~~~~~i~-~~~~ik~~l~~~gPV~v~~~~--~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~  156 (187)
                       .|..+. ..+.++..+...+||++.+..  +.|..|++|||..   +++. ..+|||+||||+    .+|||||||||+
T Consensus       107 -~~~~~~~~~~~~~~~~~~~~pv~~~~~~~~~~f~~~~~gi~~~---~~~~-~~~Hav~iVGy~----~~ywiirNSWG~  177 (208)
T d1o0ea_         107 -GYNGVPFCNEXALKQAVAVQPSTVAIDASSAQFQQYSSGIFSG---PCGT-KLNHGVTIVGYQ----ANYWIVRNSWGR  177 (208)
T ss_dssp             -EEEECCTTCHHHHHHHHHHSCEEEEECCCSHHHHTCCSSEECC---CCCS-CCCEEEEEEEEC----SSEEEEECSBCT
T ss_pred             -cccccccchhhHHHHHhhcCCceEEEEecchhhcccccCcccc---cccc-cCCcEEEEEeee----cceEEEECCCCC
Confidence             777777 444444555555888888876  7999999999976   3333 479999999997    459999999999


Q ss_pred             CCCCCcEEEEEec--CCeecccceeeEEE
Q psy274          157 IGPDEGFFKIERG--NNACGIETIAGYAT  183 (187)
Q Consensus       157 ~WG~~Gy~~i~~~--~n~cgi~~~~~~~~  183 (187)
                      +||++|||||+|+  .|.|||++.++||+
T Consensus       178 ~WGd~Gy~~I~~~~~~~~Cgi~~~~~~p~  206 (208)
T d1o0ea_         178 YWGEKGYIRMLRVGGCGLCGIARLPYYPT  206 (208)
T ss_dssp             TSTBTTEEEEECCSTTCGGGTTSSCEEEE
T ss_pred             CcccCCeEEEEccCCCCccCccccceecc
Confidence            9999999999994  47899999999997

>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]

Probab=99.15  E-value=9.4e-11  Score=98.46  Aligned_cols=80  Identities=15%  Similarity=0.185  Sum_probs=59.0

Q ss_pred             HHHHHHHhCCCEEEEEECccccccCCceeeCCC---CCC--------------CCCcccEEEEEEEEee-cCCc--cEEE
Q psy274           90 TMKKILYKYGPLSVGLNGHLIHFYNGTPIKKND---EIC--------------SPNAIGHAVLLVGYGK-QDDI--PYWL  149 (187)
Q Consensus        90 ~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~---~~~--------------~~~~~~Hav~iVGyg~-~~g~--~ywi  149 (187)
                      .++..|..+.||..+-++..+...+.||....-   +..              .....+|||+|+|++. ++|+  .+|+
T Consensus       315 ~~~~sL~~g~pVwfgcDV~k~f~~k~Gi~d~~~~~~~~~~~~~~~~K~~Rl~~~es~~tHAM~ltGv~~D~~g~~~~~w~  394 (458)
T d3gcba_         315 LVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESLMTHAMLITGCHVDETSKLPLRYR  394 (458)
T ss_dssp             HHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCCCCEEEEEEEEEECTTTCSEEEEE
T ss_pred             HHHHHHhcCCcEEEEecccccccccccccccccccccccCCCcccCHHHHHHhCCCCCCeeEEEEEEEEcCCCCccceEE
Confidence            345567788899999999556777777765410   000              1114689999999994 4554  5999


Q ss_pred             EEccCCCCCCCCcEEEEEec
Q psy274          150 ARNSWGPIGPDEGFFKIERG  169 (187)
Q Consensus       150 vkNSWG~~WG~~Gy~~i~~~  169 (187)
                      |+||||+.+|++||+.++-.
T Consensus       395 VeNSWG~~~g~~Gy~~msd~  414 (458)
T d3gcba_         395 VENSWGKDSGKDGLYVMTQK  414 (458)
T ss_dssp             EECSBCTTSTBTTEEEEEHH
T ss_pred             EEeccCCCCCCCceEEecHH
Confidence            99999999999999998754

>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Bleomycin hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1e-08  Score=85.55  Aligned_cols=81  Identities=15%  Similarity=0.181  Sum_probs=57.7

Q ss_pred             HHHHHHHHhCCCEEEEEECccccccCCceeeCCC---------CC--C--------CCCcccEEEEEEEEee---cCCc-
Q psy274           89 ETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKND---------EI--C--------SPNAIGHAVLLVGYGK---QDDI-  145 (187)
Q Consensus        89 ~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~---------~~--~--------~~~~~~Hav~iVGyg~---~~g~-  145 (187)
                      +.+...|.++-||..+-++..+..-+.||.+..-         +.  -        .....+||++|+|++.   ++|+ 
T Consensus       309 ~~~~~sL~~g~~VwfgcDV~k~~~~k~Gv~d~~~~d~~~~fg~~~~~m~K~~Rl~y~es~~tHAM~ltGv~l~dd~~G~~  388 (453)
T d2cb5a_         309 KMVAASIKDGEAVWFGCDVGKHFNSKLGLSDMNLYDHELVFGVSLKNMNKAERLTFGESLMTHAMTFTAVSEKDDQDGAF  388 (453)
T ss_dssp             HHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCHHHHHSCCSCSSCHHHHHHTTSCCCCEEEEEEEEEECTTSCSCE
T ss_pred             HHHHHHHhcCCcEEEEcccchhcchhccccccccccccccccCCcccCCHHHHHHhcCcCCCceEEEEEEecccccCCCE
Confidence            3445677788899999999444555556542200         10  0        1124689999999984   4566 


Q ss_pred             cEEEEEccCCCCCCCCcEEEEEec
Q psy274          146 PYWLARNSWGPIGPDEGFFKIERG  169 (187)
Q Consensus       146 ~ywivkNSWG~~WG~~Gy~~i~~~  169 (187)
                      .+|+|+||||+.-|++||+.++..
T Consensus       389 ~~w~VENSWG~~~g~kGy~~Msd~  412 (453)
T d2cb5a_         389 TKWRVENSWGEDHGHKGYLCMTDE  412 (453)
T ss_dssp             EEEEEECSBCTTSTBTTEEEEEHH
T ss_pred             eEEEEEccccCcCCCCceEEecHH
Confidence            699999999999999999999754

>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain SspB
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.00  E-value=3.9  Score=28.19  Aligned_cols=71  Identities=14%  Similarity=0.215  Sum_probs=52.8

Q ss_pred             ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeecCCccEEEEEccCCCCCCCCcEEEE
Q psy274           87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQDDIPYWLARNSWGPIGPDEGFFKI  166 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i  166 (187)
                      +.+++++.+..+.|+.+.-.-          .+.   .......+||++|+|+-+.++.+--++-|=|     |+||.-.
T Consensus        98 sy~~Vd~lt~~Nkgi~il~~~----------v~~---~~n~~hagHAmaV~GnA~~nn~~~ii~WNPW-----D~g~~~q  159 (183)
T d1pxva_          98 SYNQVDQLTKDNVGIMILAQS----------VSQ---NPNDPHLGHALAVVGNAKINDQEKLIYWNPW-----DTELSIQ  159 (183)
T ss_dssp             CHHHHHHHHHTTCCEEEEEEC----------CCS---STTSCCCEEEEEEEEEEEETTEEEEEEECTT-----CSSCEEE
T ss_pred             cHHHHHHHhhcCCcEEEEeee----------ecc---CCCCcccceeEEEeeeeeEcCceEEEEeCCC-----cCCcccc
Confidence            788999999999998764320          101   1123357999999999998888878887877     5699888


Q ss_pred             EecCCeecc
Q psy274          167 ERGNNACGI  175 (187)
Q Consensus       167 ~~~~n~cgi  175 (187)
                      ....|...+
T Consensus       160 da~Sn~I~v  168 (183)
T d1pxva_         160 DADSSLLHL  168 (183)
T ss_dssp             ETTCCEEEE
T ss_pred             CCccCeEee
Confidence            887776555

>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Staphopain StpA
species: Staphylococcus aureus [TaxId: 1280]

Probab=83.21  E-value=2.4  Score=29.03  Aligned_cols=70  Identities=20%  Similarity=0.305  Sum_probs=50.0

Q ss_pred             ChHHHHHHHHhCCCEEEEEECccccccCCceeeCCCCCCCCCcccEEEEEEEEeec-CCccEEEEEccCCCCCCCCcEEE
Q psy274           87 GSETMKKILYKYGPLSVGLNGHLIHFYNGTPIKKNDEICSPNAIGHAVLLVGYGKQ-DDIPYWLARNSWGPIGPDEGFFK  165 (187)
Q Consensus        87 ~~~~ik~~l~~~gPV~v~~~~~~f~~y~~giy~~~~~~~~~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WG~~Gy~~  165 (187)
                      +.+++.+.+..+.-+.+-..            ..  +.|.....+||+.|+|+-+- ++.+--++-|=|     |+||.-
T Consensus        88 sy~~vd~lt~~Nkgi~il~~------------~v--es~~g~h~~hAmaV~GnA~~nn~q~vi~~WNPW-----d~~~~~  148 (173)
T d1cv8a_          88 TYNEVDNLTKNNKGIAILGS------------RV--ESRNGMHAGHAMAVVGNAKLNNGQEVIIIWNPW-----DNGFMT  148 (173)
T ss_dssp             CHHHHHHHHHTTCCEEEEEE------------ES--SCBTTBCCEEEEEEEEEEEETTSCEEEEEECTT-----CSSCEE
T ss_pred             chhhHHHHhhccCCcEeeee------------cc--cCCCCCccceeEEEeecceecCCceEEEEeCCC-----cCCccc
Confidence            67788888887665554332            11  23444468999999999976 568888888998     458988


Q ss_pred             EEecCCeecc
Q psy274          166 IERGNNACGI  175 (187)
Q Consensus       166 i~~~~n~cgi  175 (187)
                      .....|...+
T Consensus       149 qda~Sn~I~v  158 (173)
T d1cv8a_         149 QDAKNNVIPV  158 (173)
T ss_dssp             EETTCCEEEC
T ss_pred             cCCccCeeee
Confidence            8887766554