Psyllid ID: psy2751

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100--
Protein Sequence
MEFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNFT
Secondary Structure (PSIPRED)
cEEEEEEEccEEEEEEccccccccEEEEcccccccccEEEEEEccEEEEEccccccccEEEccccccccccccccEEEEEccEEEEEEEEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccEEEEcHHHEccccEEEEEccccccccEEEEEEcccEEccccccccccccccccccccccccccccEEEEEcEEEEccEEEEEEEccccccc
Coil and Loop (DISEMBL)
MEFATVIRQGEKLTVraedivlgdvvdvkfgdripadIRIIECrgfkvdnssltgesepqsrgvdftndnpletknlgffstnavegnAFSSFVLLLANNFT
Flexible Loop (DISEMBL)
mefatvirqgekltvraedivlgdvvdvkfgdripadiriiecrgfkvdnssltgesepqsrgvdftndNPLETKNLGFFSTNAVEGNAFSSFVLLLANNFT
Low Complexity Region (SEG)
MEFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNFT
Disordered region (IsUnstruct)
****TVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKV**************************KNLGFFSTNAVEGNAFSSFVLLLA****
Disordered Region (DISOPRED)
*EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFSTNAVEGNAFSSFVLLLAN***
Disordered Region (DISEMBL)
MEFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSS***********VDFTNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNFT
Disordered Region (DISPRO)
*EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDN******************DNPLETKNLGFFSTNAVEGNAFSSFVLLL*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNFT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	102	2.2.26 [Sep-21-2011]
P13607	1041	Sodium/potassium-transpor	yes	N/A	0.862	0.084	0.852	1e-38
P35317	1031	Sodium/potassium-transpor	N/A	N/A	0.843	0.083	0.767	6e-34
P28774	1004	Sodium/potassium-transpor	N/A	N/A	0.843	0.085	0.674	3e-32
P17326	996	Sodium/potassium-transpor	N/A	N/A	0.862	0.088	0.670	1e-30
Q92123	1025	Sodium/potassium-transpor	N/A	N/A	0.843	0.083	0.709	2e-30
Q9N0Z6	1023	Sodium/potassium-transpor	yes	N/A	0.843	0.084	0.709	2e-30
Q8VDN2	1023	Sodium/potassium-transpor	yes	N/A	0.843	0.084	0.709	2e-30
P06685	1023	Sodium/potassium-transpor	yes	N/A	0.843	0.084	0.709	2e-30
Q6RWA9	1014	Sodium/potassium-transpor	N/A	N/A	0.862	0.086	0.647	4e-30
P05023	1023	Sodium/potassium-transpor	yes	N/A	0.843	0.084	0.697	6e-30

>sp|P13607|ATNA_DROME Sodium/potassium-transporting ATPase subunit alpha OS=Drosophila melanogaster GN=Atpalpha PE=1 SV=3

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/88 (85%), Positives = 83/88 (94%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIR+GEKLT+RAED+VLGDVV+VKFGDRIPADIRIIE R FKVDNSSLTGESEPQS
Sbjct: 185 QFATVIREGEKLTLRAEDLVLGDVVEVKFGDRIPADIRIIEARNFKVDNSSLTGESEPQS 244

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG +FT++NPLETKNL FFSTNAVEG A
Sbjct: 245 RGAEFTHENPLETKNLAFFSTNAVEGTA 272

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 6EC: .EC: 3EC: .EC: 9

>sp|P35317|AT1A_HYDVU Sodium/potassium-transporting ATPase subunit alpha OS=Hydra vulgaris PE=2 SV=1

 Score =  142 bits (358), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 66/86 (76%), Positives = 76/86 (88%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A V+R G+K+T+ AE  V+GDVV VKFGDRIPADIRI+EC+G KVDNSSLTGESEPQSR 
Sbjct: 175 ALVLRDGKKITINAEQCVVGDVVFVKFGDRIPADIRIVECKGLKVDNSSLTGESEPQSRA 234

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
           VDFT++NP+ETKNL FFSTNAVEG A
Sbjct: 235 VDFTHENPIETKNLAFFSTNAVEGTA 260

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Hydra vulgaris (taxid: 6087)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P28774|AT1B_ARTSF Sodium/potassium-transporting ATPase subunit alpha-B OS=Artemia franciscana PE=2 SV=1

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 78/86 (90%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           ++A  +R+G+++T++AE++ +GD+V+VKFGDR+PAD+R++E R FKVDNSSLTGESEPQ+
Sbjct: 148 QYALALREGQRVTLKAEELTMGDIVEVKFGDRVPADLRVLEARSFKVDNSSLTGESEPQA 207

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEG 87
           R  +FTNDNPLETKNL FFSTNAVEG
Sbjct: 208 RSPEFTNDNPLETKNLAFFSTNAVEG 233

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Artemia franciscana (taxid: 6661)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P17326|AT1A_ARTSF Sodium/potassium-transporting ATPase subunit alpha-A OS=Artemia franciscana PE=2 SV=1

 Score =  131 bits (329), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 59/88 (67%), Positives = 72/88 (81%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FA VIR G+K+ ++AE++ +GD+V+VKFGDRIPADIRI  C+  KVDNSSLTGESEPQS
Sbjct: 144 QFAFVIRDGKKIQLKAEEVTVGDLVEVKFGDRIPADIRITSCQSMKVDNSSLTGESEPQS 203

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           R  + TNDNPLETKNL FF TN +EG  
Sbjct: 204 RSTECTNDNPLETKNLAFFFTNTLEGTG 231

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Artemia franciscana (taxid: 6661)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q92123|AT1A1_XENLA Sodium/potassium-transporting ATPase subunit alpha-1 OS=Xenopus laevis GN=atp1a1 PE=2 SV=1

 Score =  130 bits (328), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEKL++ AE++VLGD+V+VK GDRIPAD+R+I   G KVDNSSLTGESEPQ+R 
Sbjct: 171 ALVIRSGEKLSINAEEVVLGDLVEVKGGDRIPADLRVISSHGCKVDNSSLTGESEPQTRS 230

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 231 PDFTNENPLETRNIAFFSTNCVEGTA 256

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q9N0Z6|AT1A1_RABIT Sodium/potassium-transporting ATPase subunit alpha-1 OS=Oryctolagus cuniculus GN=ATP1A1 PE=2 SV=2

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK+++ AED+V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 169 ALVIRNGEKMSINAEDVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 228

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 229 PDFTNENPLETRNIAFFSTNCVEGTA 254

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients (By similarity). May contribute to blood-heart barrier properties of endocardial endothelium and may control cardiac performance via endothelial Na(+)/H(+) exchange.

Oryctolagus cuniculus (taxid: 9986)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q8VDN2|AT1A1_MOUSE Sodium/potassium-transporting ATPase subunit alpha-1 OS=Mus musculus GN=Atp1a1 PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK+++ AED+V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 169 ALVIRNGEKMSINAEDVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 228

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 229 PDFTNENPLETRNIAFFSTNCVEGTA 254

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P06685|AT1A1_RAT Sodium/potassium-transporting ATPase subunit alpha-1 OS=Rattus norvegicus GN=Atp1a1 PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK+++ AED+V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 169 ALVIRNGEKMSINAEDVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 228

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 229 PDFTNENPLETRNIAFFSTNCVEGTA 254

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|Q6RWA9|AT1A_TAESO Sodium/potassium-transporting ATPase subunit alpha OS=Taenia solium PE=2 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 74/88 (84%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           ++A VIR G+++   AE +V+GD++DVKFGDR+PADIR+I+   FKVDNS+LTGESEPQ+
Sbjct: 159 QYAVVIRGGQRIDAPAEALVVGDIIDVKFGDRVPADIRVIKASSFKVDNSALTGESEPQT 218

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           R  ++TN+NPLETKNL FFSTNAVEG  
Sbjct: 219 RTAEYTNENPLETKNLAFFSTNAVEGTC 246

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Taenia solium (taxid: 6204)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

>sp|P05023|AT1A1_HUMAN Sodium/potassium-transporting ATPase subunit alpha-1 OS=Homo sapiens GN=ATP1A1 PE=1 SV=1

 Score =  129 bits (323), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK+++ AE++V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 169 ALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 228

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 229 PDFTNENPLETRNIAFFSTNCVEGTA 254

This is the catalytic component of the active enzyme, which catalyzes the hydrolysis of ATP coupled with the exchange of sodium and potassium ions across the plasma membrane. This action creates the electrochemical gradient of sodium and potassium ions, providing the energy for active transport of various nutrients.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
407731564	1037	Na+,K+ ATPase alpha-subunit 1 [Boisea tr	0.862	0.084	0.909	3e-39
399114489	715	Na+/K+ ATPase alpha subunit, partial [Py	0.862	0.123	0.897	4e-39
399114509	717	Na+/K+ ATPase alpha subunit, partial [Sa	0.862	0.122	0.875	2e-38
407731586	1041	Na+,K+ ATPase alpha-subunit 1 [Lophocamp	0.862	0.084	0.875	2e-38
399114487	719	Na+/K+ ATPase alpha subunit, partial [La	0.862	0.122	0.875	4e-38
399114515	785	Na+/K+ ATPase alpha subunit, partial [Eu	0.862	0.112	0.863	5e-38
399114511	716	Na+/K+ ATPase alpha subunit, partial [Cy	0.862	0.122	0.863	6e-38
357622224	1193	putative sodium pump alpha subunit [Dana	0.862	0.073	0.875	6e-38
407731580	1009	Na+,K+ ATPase alpha-subunit 1 [Danaus pl	0.862	0.087	0.875	6e-38
407731582	1036	Na+,K+ ATPase alpha-subunit 1 [Euchaetes	0.862	0.084	0.863	7e-38

>gi|407731564|gb|AFU25668.1| Na+,K+ ATPase alpha-subunit 1 [Boisea trivittata]

 Score =  165 bits (418), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 80/88 (90%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIRQGEKLT+RAEDIVLGDVV+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 181 QFATVIRQGEKLTLRAEDIVLGDVVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 240

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RGV+ TNDNPLETKNL FFSTNAVEG A
Sbjct: 241 RGVELTNDNPLETKNLAFFSTNAVEGTA 268

Source: Boisea trivittata

Species: Boisea trivittata

Genus: Boisea

Family: Rhopalidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399114489|emb|CCJ05434.1| Na+/K+ ATPase alpha subunit, partial [Pyrrhocoris apterus]

 Score =  165 bits (417), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/88 (89%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIRQGEKLT+RAEDIVLGDVV+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 66  QFATVIRQGEKLTLRAEDIVLGDVVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 125

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG++ TNDNPLETKNL FFSTNAVEG A
Sbjct: 126 RGIELTNDNPLETKNLAFFSTNAVEGTA 153

Source: Pyrrhocoris apterus

Species: Pyrrhocoris apterus

Genus: Pyrrhocoris

Family: Pyrrhocoridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399114509|emb|CCJ05444.1| Na+/K+ ATPase alpha subunit, partial [Saucrobotys futilalis]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/88 (87%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIR+GEKLT+RAED+VLGD+V+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 72  QFATVIREGEKLTLRAEDLVLGDIVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 131

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG DFTN+NPLETKNL FFSTNAVEG A
Sbjct: 132 RGADFTNENPLETKNLAFFSTNAVEGTA 159

Source: Saucrobotys futilalis

Species: Saucrobotys futilalis

Genus: Saucrobotys

Family: Crambidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|407731586|gb|AFU25679.1| Na+,K+ ATPase alpha-subunit 1 [Lophocampa caryae]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 77/88 (87%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIR+GEKLT+RAED+VLGD+V+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 185 QFATVIREGEKLTLRAEDLVLGDIVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 244

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG DFTN+NPLETKNL FFSTNAVEG A
Sbjct: 245 RGADFTNENPLETKNLAFFSTNAVEGTA 272

Source: Lophocampa caryae

Species: Lophocampa caryae

Genus: Lophocampa

Family: Arctiidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399114487|emb|CCJ05433.1| Na+/K+ ATPase alpha subunit, partial [Largus sp. SD-2012]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 77/88 (87%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIRQGEKLT+RAEDIV+GDVV+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 74  QFATVIRQGEKLTLRAEDIVVGDVVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 133

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG++ TN+NPLETKNL FFSTNAVEG A
Sbjct: 134 RGIELTNENPLETKNLAFFSTNAVEGTA 161

Source: Largus sp. SD-2012

Species: Largus sp. SD-2012

Genus: Largus

Family: Largidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399114515|emb|CCJ05447.1| Na+/K+ ATPase alpha subunit, partial [Euchaetes egle]

 Score =  161 bits (407), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIR+GEKLT+RAED+VLGD+V+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 63  QFATVIREGEKLTLRAEDLVLGDIVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 122

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG +FTN+NPLETKNL FFSTNAVEG A
Sbjct: 123 RGAEFTNENPLETKNLAFFSTNAVEGTA 150

Source: Euchaetes egle

Species: Euchaetes egle

Genus: Euchaetes

Family: Arctiidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|399114511|emb|CCJ05445.1| Na+/K+ ATPase alpha subunit, partial [Cycnia oregonensis]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIR+GEKLT+RAED+VLGD+V+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 71  QFATVIREGEKLTLRAEDLVLGDIVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 130

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG +FTN+NPLETKNL FFSTNAVEG A
Sbjct: 131 RGAEFTNENPLETKNLAFFSTNAVEGTA 158

Source: Cycnia oregonensis

Species: Cycnia oregonensis

Genus: Cycnia

Family: Arctiidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622224|gb|EHJ73788.1| putative sodium pump alpha subunit [Danaus plexippus]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/88 (87%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIR+GEKLT+RAED+VLGDVV+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 231 QFATVIREGEKLTLRAEDLVLGDVVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 290

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG +FTN+NPLETKNL FFSTNAVEG A
Sbjct: 291 RGPEFTNENPLETKNLAFFSTNAVEGTA 318

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|407731580|gb|AFU25676.1| Na+,K+ ATPase alpha-subunit 1 [Danaus plexippus]

 Score =  160 bits (406), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 77/88 (87%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIR+GEKLT+RAED+VLGDVV+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 153 QFATVIREGEKLTLRAEDLVLGDVVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 212

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG +FTN+NPLETKNL FFSTNAVEG A
Sbjct: 213 RGPEFTNENPLETKNLAFFSTNAVEGTA 240

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|407731582|gb|AFU25677.1| Na+,K+ ATPase alpha-subunit 1 [Euchaetes egle]

 Score =  160 bits (406), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 76/88 (86%), Positives = 84/88 (95%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           +FATVIR+GEKLT+RAED+VLGD+V+VKFGDRIPADIRIIE RGFKVDNSSLTGESEPQS
Sbjct: 180 QFATVIREGEKLTLRAEDLVLGDIVEVKFGDRIPADIRIIEARGFKVDNSSLTGESEPQS 239

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           RG +FTN+NPLETKNL FFSTNAVEG A
Sbjct: 240 RGAEFTNENPLETKNLAFFSTNAVEGTA 267

Source: Euchaetes egle

Species: Euchaetes egle

Genus: Euchaetes

Family: Arctiidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	102
FB|FBgn0002921	1041	Atpalpha "Na pump alpha subuni	0.862	0.084	0.852	6.8e-35
UNIPROTKB|Q6P1S7	1023	atp1a1 "ATPase, Na+/K+ transpo	0.843	0.084	0.732	1.5e-29
UNIPROTKB|Q7ZSX5	1023	atp1a1 "MGC53886 protein" [Xen	0.843	0.084	0.720	3.2e-29
UNIPROTKB|Q9N0Z6	1023	ATP1A1 "Sodium/potassium-trans	0.843	0.084	0.709	6.6e-29
MGI|MGI:88105	1023	Atp1a1 "ATPase, Na+/K+ transpo	0.843	0.084	0.709	6.6e-29
RGD|2167	1023	Atp1a1 "ATPase, Na+/K+ transpo	0.843	0.084	0.709	6.6e-29
UNIPROTKB|Q6IP41	1025	atp1a1a.1 "Atp1a1a.1 protein"	0.843	0.083	0.709	8.5e-29
UNIPROTKB|Q92123	1025	atp1a1 "Sodium/potassium-trans	0.843	0.083	0.709	8.5e-29
UNIPROTKB|F1SAX3	1020	ATP1A1 "Sodium/potassium-trans	0.843	0.084	0.697	1.7e-28
UNIPROTKB|F1PBA1	1021	ATP1A1 "Sodium/potassium-trans	0.843	0.084	0.697	1.8e-28

FB|FBgn0002921 Atpalpha "Na pump alpha subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 389 (142.0 bits), Expect = 6.8e-35, P = 6.8e-35
 Identities = 75/88 (85%), Positives = 83/88 (94%)

Query:     2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
             +FATVIR+GEKLT+RAED+VLGDVV+VKFGDRIPADIRIIE R FKVDNSSLTGESEPQS
Sbjct:   185 QFATVIREGEKLTLRAEDLVLGDVVEVKFGDRIPADIRIIEARNFKVDNSSLTGESEPQS 244

Query:    62 RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
             RG +FT++NPLETKNL FFSTNAVEG A
Sbjct:   245 RGAEFTHENPLETKNLAFFSTNAVEGTA 272

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISS;NAS;IMP

GO:0009612 "response to mechanical stimulus" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0001700 "embryonic development via the syncytial blastoderm" evidence=IMP

GO:0006812 "cation transport" evidence=NAS;IDA

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IC;ISS;NAS

GO:0008324 "cation transmembrane transporter activity" evidence=IDA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0035158 "regulation of tube diameter, open tracheal system" evidence=IMP

GO:0008360 "regulation of cell shape" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0050905 "neuromuscular process" evidence=IMP

GO:0001894 "tissue homeostasis" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0005918 "septate junction" evidence=IDA

GO:0019991 "septate junction assembly" evidence=IMP

GO:0035152 "regulation of tube architecture, open tracheal system" evidence=TAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IDA

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

UNIPROTKB|Q6P1S7 atp1a1 "ATPase, Na+/K+ transporting, alpha 1 polypeptide" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 331 (121.6 bits), Expect = 1.5e-29, Sum P(2) = 1.5e-29
 Identities = 63/86 (73%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEKL++ AED+VLGD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct:   169 ALVIRNGEKLSINAEDVVLGDLVEVKGGDRIPADVRIISAHGCKVDNSSLTGESEPQTRS 228

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTN+NPLET+N+ FFSTN VEG A
Sbjct:   229 PDFTNENPLETRNIAFFSTNCVEGTA 254

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q7ZSX5 atp1a1 "MGC53886 protein" [Xenopus laevis (taxid:8355)]

 Score = 328 (120.5 bits), Expect = 3.2e-29, Sum P(2) = 3.2e-29
 Identities = 62/86 (72%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEKL++ AE++VLGD+V+VK GDRIPAD+R+I   G KVDNSSLTGESEPQ+R 
Sbjct:   169 ALVIRSGEKLSINAEEVVLGDLVEVKGGDRIPADLRVISSHGCKVDNSSLTGESEPQTRS 228

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTNDNPLET+N+ FFSTN VEG A
Sbjct:   229 PDFTNDNPLETRNIAFFSTNCVEGTA 254

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q9N0Z6 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Oryctolagus cuniculus (taxid:9986)]

 Score = 325 (119.5 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEK+++ AED+V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct:   169 ALVIRNGEKMSINAEDVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 228

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTN+NPLET+N+ FFSTN VEG A
Sbjct:   229 PDFTNENPLETRNIAFFSTNCVEGTA 254

GO:0002028 "regulation of sodium ion transport" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

MGI|MGI:88105 Atp1a1 "ATPase, Na+/K+ transporting, alpha 1 polypeptide" [Mus musculus (taxid:10090)]

 Score = 325 (119.5 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEK+++ AED+V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct:   169 ALVIRNGEKMSINAEDVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 228

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTN+NPLET+N+ FFSTN VEG A
Sbjct:   229 PDFTNENPLETRNIAFFSTNCVEGTA 254

GO:0000166 "nucleotide binding" evidence=IEA

GO:0002026 "regulation of the force of heart contraction" evidence=IMP

GO:0002028 "regulation of sodium ion transport" evidence=ISO

GO:0003869 "4-nitrophenylphosphatase activity" evidence=IMP

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO

GO:0005768 "endosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=ISO

GO:0005901 "caveola" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=IMP

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006812 "cation transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=ISO

GO:0006814 "sodium ion transport" evidence=ISO

GO:0008217 "regulation of blood pressure" evidence=IGI

GO:0010107 "potassium ion import" evidence=ISO

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016311 "dephosphorylation" evidence=IMP

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0016820 "hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030315 "T-tubule" evidence=IDA

GO:0030506 "ankyrin binding" evidence=ISO

GO:0030955 "potassium ion binding" evidence=ISO

GO:0031402 "sodium ion binding" evidence=ISO

GO:0031947 "negative regulation of glucocorticoid biosynthetic process" evidence=IMP

GO:0035725 "sodium ion transmembrane transport" evidence=IMP

GO:0042383 "sarcolemma" evidence=IDA

GO:0042493 "response to drug" evidence=IMP

GO:0043531 "ADP binding" evidence=ISO

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0045822 "negative regulation of heart contraction" evidence=IMP

GO:0045823 "positive regulation of heart contraction" evidence=IMP

GO:0045989 "positive regulation of striated muscle contraction" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051087 "chaperone binding" evidence=ISO

GO:0060081 "membrane hyperpolarization" evidence=ISO

GO:0071260 "cellular response to mechanical stimulus" evidence=ISO

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=ISO

RGD|2167 Atp1a1 "ATPase, Na+/K+ transporting, alpha 1 polypeptide" [Rattus norvegicus (taxid:10116)]

 Score = 325 (119.5 bits), Expect = 6.6e-29, Sum P(2) = 6.6e-29
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEK+++ AED+V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct:   169 ALVIRNGEKMSINAEDVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 228

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTN+NPLET+N+ FFSTN VEG A
Sbjct:   229 PDFTNENPLETRNIAFFSTNCVEGTA 254

GO:0002026 "regulation of the force of heart contraction" evidence=IEA;ISO

GO:0002028 "regulation of sodium ion transport" evidence=IDA

GO:0003869 "4-nitrophenylphosphatase activity" evidence=IEA;ISO

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0005890 "sodium:potassium-exchanging ATPase complex" evidence=IDA

GO:0005901 "caveola" evidence=IDA

GO:0006200 "ATP catabolic process" evidence=ISO;TAS

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IDA

GO:0006814 "sodium ion transport" evidence=IDA

GO:0008217 "regulation of blood pressure" evidence=IEA;ISO

GO:0010107 "potassium ion import" evidence=IDA

GO:0015988 "energy coupled proton transmembrane transport, against electrochemical gradient" evidence=TAS

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISS

GO:0016311 "dephosphorylation" evidence=ISO

GO:0016323 "basolateral plasma membrane" evidence=IEA;ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0030315 "T-tubule" evidence=IEA;ISO

GO:0030506 "ankyrin binding" evidence=IPI

GO:0030955 "potassium ion binding" evidence=IDA

GO:0031402 "sodium ion binding" evidence=IDA

GO:0031947 "negative regulation of glucocorticoid biosynthetic process" evidence=IEA;ISO

GO:0035725 "sodium ion transmembrane transport" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0042470 "melanosome" evidence=IEA

GO:0042493 "response to drug" evidence=IEA;ISO

GO:0043531 "ADP binding" evidence=IDA

GO:0043548 "phosphatidylinositol 3-kinase binding" evidence=IPI

GO:0045121 "membrane raft" evidence=IDA

GO:0045822 "negative regulation of heart contraction" evidence=IEA;ISO

GO:0045823 "positive regulation of heart contraction" evidence=IEA;ISO

GO:0045989 "positive regulation of striated muscle contraction" evidence=IEA;ISO

GO:0051087 "chaperone binding" evidence=IDA

GO:0060081 "membrane hyperpolarization" evidence=IMP

GO:0071260 "cellular response to mechanical stimulus" evidence=IDA

GO:0086004 "regulation of cardiac muscle cell contraction" evidence=IMP

UNIPROTKB|Q6IP41 atp1a1a.1 "Atp1a1a.1 protein" [Xenopus laevis (taxid:8355)]

 Score = 324 (119.1 bits), Expect = 8.5e-29, Sum P(2) = 8.5e-29
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEKL++ AE++VLGD+V+VK GDRIPAD+R+I   G KVDNSSLTGESEPQ+R 
Sbjct:   171 ALVIRSGEKLSINAEEVVLGDLVEVKGGDRIPADLRVISSHGCKVDNSSLTGESEPQTRS 230

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTN+NPLET+N+ FFSTN VEG A
Sbjct:   231 PDFTNENPLETRNIAFFSTNCVEGTA 256

GO:0016021 "integral to membrane" evidence=ISS

UNIPROTKB|Q92123 atp1a1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Xenopus laevis (taxid:8355)]

 Score = 324 (119.1 bits), Expect = 8.5e-29, Sum P(2) = 8.5e-29
 Identities = 61/86 (70%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEKL++ AE++VLGD+V+VK GDRIPAD+R+I   G KVDNSSLTGESEPQ+R 
Sbjct:   171 ALVIRSGEKLSINAEEVVLGDLVEVKGGDRIPADLRVISSHGCKVDNSSLTGESEPQTRS 230

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTN+NPLET+N+ FFSTN VEG A
Sbjct:   231 PDFTNENPLETRNIAFFSTNCVEGTA 256

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|F1SAX3 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Sus scrofa (taxid:9823)]

 Score = 321 (118.1 bits), Expect = 1.7e-28, Sum P(2) = 1.7e-28
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEK+++ AE++V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct:   166 ALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 225

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTN+NPLET+N+ FFSTN VEG A
Sbjct:   226 PDFTNENPLETRNIAFFSTNCVEGTA 251

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0015077 "monovalent inorganic cation transmembrane transporter activity" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0019829 "cation-transporting ATPase activity" evidence=IEA

UNIPROTKB|F1PBA1 ATP1A1 "Sodium/potassium-transporting ATPase subunit alpha-1" [Canis lupus familiaris (taxid:9615)]

 Score = 321 (118.1 bits), Expect = 1.8e-28, Sum P(2) = 1.8e-28
 Identities = 60/86 (69%), Positives = 73/86 (84%)

Query:     4 ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             A VIR GEK+++ AE++V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct:   167 ALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 226

Query:    64 VDFTNDNPLETKNLGFFSTNAVEGNA 89
              DFTN+NPLET+N+ FFSTN VEG A
Sbjct:   227 PDFTNENPLETRNIAFFSTNCVEGTA 252

GO:0045989 "positive regulation of striated muscle contraction" evidence=IEA

GO:0045823 "positive regulation of heart contraction" evidence=IEA

GO:0045822 "negative regulation of heart contraction" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0031947 "negative regulation of glucocorticoid biosynthetic process" evidence=IEA

GO:0030315 "T-tubule" evidence=IEA

GO:0016323 "basolateral plasma membrane" evidence=IEA

GO:0008217 "regulation of blood pressure" evidence=IEA

GO:0005391 "sodium:potassium-exchanging ATPase activity" evidence=IEA

GO:0003869 "4-nitrophenylphosphatase activity" evidence=IEA

GO:0002026 "regulation of the force of heart contraction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P05023	AT1A1_HUMAN	3, ., 6, ., 3, ., 9	0.6976	0.8431	0.0840	yes	N/A
P18907	AT1A1_HORSE	3, ., 6, ., 3, ., 9	0.6860	0.8431	0.0842	yes	N/A
P05024	AT1A1_PIG	3, ., 6, ., 3, ., 9	0.6976	0.8431	0.0842	yes	N/A
Q8VDN2	AT1A1_MOUSE	3, ., 6, ., 3, ., 9	0.7093	0.8431	0.0840	yes	N/A
P50997	AT1A1_CANFA	3, ., 6, ., 3, ., 9	0.6860	0.8431	0.0842	yes	N/A
Q5RDR3	AT1A1_PONAB	3, ., 6, ., 3, ., 9	0.6976	0.8431	0.0840	yes	N/A
P09572	AT1A1_CHICK	3, ., 6, ., 3, ., 9	0.6744	0.8431	0.0842	yes	N/A
Q08DA1	AT1A1_BOVIN	3, ., 6, ., 3, ., 9	0.6976	0.8431	0.0842	yes	N/A
P13607	ATNA_DROME	3, ., 6, ., 3, ., 9	0.8522	0.8627	0.0845	yes	N/A
Q9N0Z6	AT1A1_RABIT	3, ., 6, ., 3, ., 9	0.7093	0.8431	0.0840	yes	N/A
P06685	AT1A1_RAT	3, ., 6, ., 3, ., 9	0.7093	0.8431	0.0840	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	102
TIGR01106	997	TIGR01106, ATPase-IIC_X-K, sodium or proton efflux	1e-47
COG0474	917	COG0474, MgtA, Cation transport ATPase [Inorganic	4e-22
TIGR01494	543	TIGR01494, ATPase_P-type, ATPase, P-type (transpor	4e-18
TIGR01116	917	TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic retic	6e-18
pfam00122	222	pfam00122, E1-E2_ATPase, E1-E2 ATPase	2e-17
TIGR01647	754	TIGR01647, ATPase-IIIA_H, plasma-membrane proton-e	1e-14
TIGR01523	1053	TIGR01523, ATPase-IID_K-Na, potassium and/or sodiu	2e-14
TIGR01522	884	TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-	5e-14
PRK10517	902	PRK10517, PRK10517, magnesium-transporting ATPase	8e-14
TIGR01524	867	TIGR01524, ATPase-IIIB_Mg, magnesium-translocating	1e-13
PRK15122	903	PRK15122, PRK15122, magnesium-transporting ATPase;	5e-12
TIGR01517	944	TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-	1e-11
COG2217	713	COG2217, ZntA, Cation transport ATPase [Inorganic	1e-11
TIGR01525	556	TIGR01525, ATPase-IB_hvy, heavy metal translocatin	1e-10
TIGR01512	536	TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb	6e-10
PRK11033	741	PRK11033, zntA, zinc/cadmium/mercury/lead-transpor	8e-10
TIGR01511	572	TIGR01511, ATPase-IB1_Cu, copper-(or silver)-trans	3e-09
PRK01122	679	PRK01122, PRK01122, potassium-transporting ATPase	2e-06
COG2216	681	COG2216, KdpB, High-affinity K+ transport system,	2e-06
TIGR01657	1054	TIGR01657, P-ATPase-V, P-type ATPase of unknown pu	1e-05
TIGR01497	675	TIGR01497, kdpB, K+-transporting ATPase, B subunit	3e-05
PRK14010	673	PRK14010, PRK14010, potassium-transporting ATPase	0.001
PRK10671	834	PRK10671, copA, copper exporting ATPase; Provision	0.003

>gnl|CDD|130176 TIGR01106, ATPase-IIC_X-K, sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

 Score =  161 bits (410), Expect = 1e-47
 Identities = 58/88 (65%), Positives = 74/88 (84%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           + A VIR GEK+++ AE +V+GD+V+VK GDRIPAD+RII  +G KVDNSSLTGESEPQ+
Sbjct: 141 QQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQGCKVDNSSLTGESEPQT 200

Query: 62  RGVDFTNDNPLETKNLGFFSTNAVEGNA 89
           R  +FT++NPLET+N+ FFSTN VEG A
Sbjct: 201 RSPEFTHENPLETRNIAFFSTNCVEGTA 228

This model describes the P-type ATPases responsible for the exchange of either protons or sodium ions for potassium ions across the plasma membranes of eukaryotes. Unlike most other P-type ATPases, members of this subfamily require a beta subunit for activity. This model encompasses eukaryotes and consists of two functional types, a Na/K antiporter found widely distributed in eukaryotes and a H/K antiporter found only in vertebrates. The Na+ or H+/K+ antiporter P-type ATPases have been characterized as Type IIC based on a published phylogenetic analysis. Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps [Energy metabolism, ATP-proton motive force interconversion]. Length = 997

>gnl|CDD|223550 COG0474, MgtA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 88.9 bits (221), Expect = 4e-22
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 4/92 (4%)

Query: 3   FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSR 62
            A V+R G+ + + A ++V GD+V ++ GD +PAD+R++E    +VD S+LTGES P  +
Sbjct: 141 KAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPVEK 200

Query: 63  GVDFTNDNP----LETKNLGFFSTNAVEGNAF 90
                  +     L+  N+ F  T  V G A 
Sbjct: 201 QALPLTKSDAPLGLDRDNMLFSGTTVVSGRAK 232

Length = 917

>gnl|CDD|233438 TIGR01494, ATPase_P-type, ATPase, P-type (transporting), HAD superfamily, subfamily IC

 Score = 77.4 bits (191), Expect = 4e-18
 Identities = 34/101 (33%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 1   MEFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQ 60
              ATV+R G K  + A+D+V GDVV VK G+ +PAD  ++    F VD S+LTGES P 
Sbjct: 34  TRPATVLRNGWK-EIPAKDLVPGDVVLVKSGETVPADGVLLSGSCF-VDESNLTGESNPV 91

Query: 61  SRGVDFTNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNF 101
            +       +   T +L F  T    G              
Sbjct: 92  LKTALKETQSGTITGDLVFAGTYVFGGTLIVVVTPTGILTT 132

The P-type ATPases are a large family of trans-membrane transporters acting on charged substances. The distinguishing feature of the family is the formation of a phosphorylated intermediate (aspartyl-phosphate) during the course of the reaction. Another common name for these enzymes is the E1-E2 ATPases based on the two isolable conformations: E1 (unphosphorylated) and E2 (phosphorylated). Generally, P-type ATPases consist of only a single subunit encompassing the ATPase and ion translocation pathway, however, in the case of the potassium (TIGR01497) and sodium/potassium (TIGR01106) varieties, these functions are split between two subunits. Additional small regulatory or stabilizing subunits may also exist in some forms. P-type ATPases are nearly ubiquitous in life and are found in numerous copies in higher organisms (at least 45 in Arabidopsis thaliana, for instance ). Phylogenetic analyses have revealed that the P-type ATPase subfamily is divided up into groups based on substrate specificities and this is represented in the various subfamily and equivalog models that have been made: IA (K+) TIGR01497, IB (heavy metals) TIGR01525, IIA1 (SERCA-type Ca++) TIGR01116, IIA2 (PMR1-type Ca++) TIGR01522, IIB (PMCA-type Ca++) TIGR01517, IIC (Na+/K+, H+/K+ antiporters) TIGR01106, IID (fungal-type Na+ and K+) TIGR01523, IIIA (H+) TIGR01647, IIIB (Mg++) TIGR01524, IV (phospholipid, flippase) TIGR01652 and V (unknown specificity) TIGR01657. The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily. Length = 543

>gnl|CDD|233277 TIGR01116, ATPase-IIA1_Ca, sarco/endoplasmic reticulum calcium-translocating P-type ATPase

 Score = 76.7 bits (189), Expect = 6e-18
 Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 3/91 (3%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           E A V+R G    ++A+D+V GD+V++  GD++PADIR++  +  +VD S LTGES   +
Sbjct: 73  EHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGESVSVN 132

Query: 62  RGVDFTNDNPL---ETKNLGFFSTNAVEGNA 89
           +  +   D      + KN+ F  T  V G A
Sbjct: 133 KHTESVPDERAVNQDKKNMLFSGTLVVAGKA 163

This model describes the P-type ATPase responsible for translocating calcium ions across the endoplasmic reticulum membrane of eukaryotes , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. These pumps transfer Ca2+ from the cytoplasm to the lumen of the endoplasmic reticulum. In humans and mice, at least, there are multiple isoforms of the SERCA pump with overlapping but not redundant functions. Defects in SERCA isoforms are associated with diseases in humans. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the latter of which is modelled by TIGR01522 [Transport and binding proteins, Cations and iron carrying compounds]. Length = 917

>gnl|CDD|215733 pfam00122, E1-E2_ATPase, E1-E2 ATPase

 Score = 73.0 bits (180), Expect = 2e-17
 Identities = 31/62 (50%), Positives = 44/62 (70%), Gaps = 1/62 (1%)

Query: 4  ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
          ATVIR G++  + A+++V+GD+V +K GDR+PAD RIIE    +VD S+LTGES P  + 
Sbjct: 36 ATVIRDGKEEEIPADELVVGDIVLLKPGDRVPADGRIIE-GSLEVDESALTGESLPVEKS 94

Query: 64 VD 65
            
Sbjct: 95 RG 96

Length = 222

>gnl|CDD|233506 TIGR01647, ATPase-IIIA_H, plasma-membrane proton-efflux P-type ATPase

 Score = 67.4 bits (165), Expect = 1e-14
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A V+R G+   + A ++V GDVV +K GD +PAD R+ E    +VD ++LTGES P ++ 
Sbjct: 94  ARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKK 153

Query: 64  VD 65
             
Sbjct: 154 TG 155

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast. Length = 754

>gnl|CDD|130586 TIGR01523, ATPase-IID_K-Na, potassium and/or sodium efflux P-type ATPase, fungal-type

 Score = 67.0 bits (163), Expect = 2e-14
 Identities = 36/91 (39%), Positives = 51/91 (56%), Gaps = 5/91 (5%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR G+   + + D+V GD+  +K GD IPAD+R+IE + F  D + LTGES P  + 
Sbjct: 120 AHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVIKD 179

Query: 64  VDFT----NDNPLETK-NLGFFSTNAVEGNA 89
              T     D P+  + NL F S+   +G A
Sbjct: 180 AHATFGKEEDTPIGDRINLAFSSSAVTKGRA 210

Initially described as a calcium efflux ATPase , more recent work has shown that the S. pombe CTA3 gene is in fact a potassium ion efflux pump. This model describes the clade of fungal P-type ATPases responsible for potassium and sodium efflux. The degree to which these pumps show preference for sodium or potassium varies. This group of ATPases has been classified by phylogentic analysis as type IID. The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump. Length = 1053

>gnl|CDD|130585 TIGR01522, ATPase-IIA2_Ca, golgi membrane calcium-translocating P-type ATPase

 Score = 65.6 bits (160), Expect = 5e-14
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             +IR+G+   V A  +V GD+V +  GDR+PAD+RI+E     +D S+LTGE+ P S+ 
Sbjct: 119 CHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGETTPVSKV 178

Query: 64  VDFTNDNPL----ETKNLGFFSTNAVEGNA 89
                        E  N+ F  T    G+ 
Sbjct: 179 TAPIPAATNGDLAERSNIAFMGTLVRCGHG 208

This model describes the P-type ATPase responsible for translocating calcium ions across the golgi membrane of fungi and animals , and is of particular importance in the sarcoplasmic reticulum of skeletal and cardiac muscle in vertebrates. The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116. Length = 884

>gnl|CDD|236705 PRK10517, PRK10517, magnesium-transporting ATPase MgtA; Provisional

 Score = 65.1 bits (159), Expect = 8e-14
 Identities = 37/97 (38%), Positives = 51/97 (52%), Gaps = 13/97 (13%)

Query: 4   ATVIRQG------EKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGES 57
           ATV+R          L +  + +V GD++ +  GD IPAD+RI++ R   V  +SLTGES
Sbjct: 161 ATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGES 220

Query: 58  EP-----QSRGVDFTNDNPLETKNLGFFSTNAVEGNA 89
            P      +R  +  + NPLE   L F  TN V G A
Sbjct: 221 LPVEKFATTRQPE--HSNPLECDTLCFMGTNVVSGTA 255

Length = 902

>gnl|CDD|130587 TIGR01524, ATPase-IIIB_Mg, magnesium-translocating P-type ATPase

 Score = 64.5 bits (157), Expect = 1e-13
 Identities = 34/95 (35%), Positives = 51/95 (53%), Gaps = 9/95 (9%)

Query: 4   ATVIRQGEK------LTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGES 57
           ATV+R   +        V  + +V GD++++  GD IPAD R+I  R   ++ S+LTGES
Sbjct: 127 ATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARDLFINQSALTGES 186

Query: 58  EPQSRGV---DFTNDNPLETKNLGFFSTNAVEGNA 89
            P  + V      +   LE +NL F  TN + G+A
Sbjct: 187 LPVEKFVEDKRARDPEILERENLCFMGTNVLSGHA 221

This model describes the magnesium translocating P-type ATPase found in a limited number of bacterial species and best described in Salmonella typhimurium, which contains two isoforms. These transporters are active in low external Mg2+ concentrations and pump the ion into the cytoplasm. The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis [Transport and binding proteins, Cations and iron carrying compounds]. Length = 867

>gnl|CDD|237914 PRK15122, PRK15122, magnesium-transporting ATPase; Provisional

 Score = 60.0 bits (146), Expect = 5e-12
 Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 19/105 (18%)

Query: 4   ATVIR------QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGES 57
           ATV+R      +  +  +   ++V GD+V +  GD IPAD+R+IE R   +  + LTGE+
Sbjct: 150 ATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTGEA 209

Query: 58  EP-------------QSRGVDFTNDNPLETKNLGFFSTNAVEGNA 89
            P              +  +     + L+  N+ F  TN V G A
Sbjct: 210 LPVEKYDTLGAVAGKSADALADDEGSLLDLPNICFMGTNVVSGTA 254

Length = 903

>gnl|CDD|188151 TIGR01517, ATPase-IIB_Ca, plasma-membrane calcium-translocating P-type ATPase

 Score = 59.0 bits (143), Expect = 1e-11
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query: 5   TVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGV 64
            VIR G++  +   DIV+GD+V +  GD +PAD   I     ++D SS+TGES+P  +G 
Sbjct: 170 AVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGP 229

Query: 65  D 65
            
Sbjct: 230 V 230

This model describes the P-type ATPase responsible for translocating calcium ions across the plasma membrane of eukaryotes , out of the cell. In some organisms, this type of pump may also be found in vacuolar membranes. In humans and mice, at least, there are multiple isoforms of the PMCA pump with overlapping but not redundant functions. Accordingly, there are no human diseases linked to PMCA defects, although alterations of PMCA function do elicit physiological effects. The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1) which are modelled by TIGR01116 and TIGR01522. This model is well separated from those. Length = 944

>gnl|CDD|225127 COG2217, ZntA, Cation transport ATPase [Inorganic ion transport and metabolism]

 Score = 59.1 bits (144), Expect = 1e-11
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 2/65 (3%)

Query: 2   EFATVIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQ 60
           + ATV+R  GE+  V  E++ +GD+V V+ G+RIP D  ++      VD S LTGES P 
Sbjct: 211 KTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSSS-VDESMLTGESLPV 269

Query: 61  SRGVD 65
            +   
Sbjct: 270 EKKPG 274

Length = 713

>gnl|CDD|233447 TIGR01525, ATPase-IB_hvy, heavy metal translocating P-type ATPase

 Score = 56.1 bits (136), Expect = 1e-10
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 4   ATVIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSR 62
           A V++  G +  V  E++ +GD+V V+ G+RIP D  +I      VD S+LTGES P  +
Sbjct: 57  ARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISGESE-VDESALTGESMPVEK 115

Query: 63  GVDFT 67
                
Sbjct: 116 KEGDE 120

This model encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512. Length = 556

>gnl|CDD|211664 TIGR01512, ATPase-IB2_Cd, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

 Score = 54.2 bits (131), Expect = 6e-10
 Identities = 25/60 (41%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A V+R G    V  E++ +GDVV VK G+R+P D  ++      VD S+LTGES P  + 
Sbjct: 57  ARVLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTS-TVDESALTGESVPVEKA 115

This model describes the P-type ATPase primarily responsible for translocating cadmium ions (and other closely-related divalent heavy metals such as cobalt, mercury, lead and zinc) across biological membranes. These transporters are found in prokaryotes and plants. Experimentally characterized members of the seed alignment include: SP|P37617 from E. coli, SP|Q10866 from Mycobacterium tuberculosis and SP|Q59998 from Synechocystis PCC6803. The cadmium P-type ATPases have been characterized as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species. This model and that describing the copper-ATPases (TIGR01511) are well separated, and thus we further type the copper-ATPases as IB1 and the cadmium-ATPases as IB2. Several sequences which have not been characterized experimentally fall just below trusted cutoff for both of these models (SP|Q9CCL1 from Mycobacterium leprae, GP|13816263 from Sulfolobus solfataricus, OMNI|NTL01CJ01098 from Campylobacter jejuni, OMNI|NTL01HS01687 from Halobacterium sp., GP|6899169 from Ureaplasma urealyticum and OMNI|HP1503 from Helicobacter pylori) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 536

>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional

 Score = 53.8 bits (130), Expect = 8e-10
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 2   EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRII-ECRGFKVDNSSLTGESEPQ 60
           E AT +R GE+  V   D+  GDV++V  G R+PAD +++     F  D S+LTGES P 
Sbjct: 243 ETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFASF--DESALTGESIPV 300

Query: 61  SR 62
            R
Sbjct: 301 ER 302

Length = 741

>gnl|CDD|233445 TIGR01511, ATPase-IB1_Cu, copper-(or silver)-translocating P-type ATPase

 Score = 52.3 bits (126), Expect = 3e-09
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 2/65 (3%)

Query: 4   ATVIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSR 62
           AT++   GE   V  E +  GD+V V  G++IP D  +IE     VD S +TGES P  +
Sbjct: 93  ATLLTDDGEIEEVPVELLQPGDIVRVLPGEKIPVDGTVIEGESE-VDESLVTGESLPVPK 151

Query: 63  GVDFT 67
            V   
Sbjct: 152 KVGDP 156

This model describes the P-type ATPase primarily responsible for translocating copper ions accross biological membranes. These transporters are found in prokaryotes and eukaryotes. This model encompasses those species which pump copper ions out of cells or organelles (efflux pumps such as CopA of Escherichia coli ) as well as those which pump the ion into cells or organelles either for the purpose of supporting life in extremely low-copper environments (for example CopA of Enterococcus hirae ) or for the specific delivery of copper to a biological complex for which it is a necessary component (for example FixI of Bradyrhizobium japonicum, or CtaA and PacS of Synechocystis). The substrate specificity of these transporters may, to a varying degree, include silver ions (for example, CopA from Archaeoglobus fulgidus). Copper transporters from this family are well known as the genes which are mutated in two human disorders of copper metabolism, Wilson's and Menkes' diseases. The sequences contributing to the seed of this model are all experimentally characterized. The copper P-type ATPases have been characterized as Type IB based on a phylogenetic analysis which combines the copper-translocating ATPases with the cadmium-translocating species. This model and that describing the cadmium-ATPases (TIGR01512) are well separated, and thus we further type the copper-ATPases as IB1 (and the cadmium-ATPases as IB2). Several sequences which have not been characterized experimentally fall just below the cutoffs for both of these models. A sequence from Enterococcus faecalis scores very high against this model, but yet is annotated as an "H+/K+ exchanging ATPase". BLAST of this sequence does not hit anything else annotated in this way. This error may come from the characterization paper published in 1987. Accession GP|7415611 from Saccharomyces cerevisiae appears to be mis-annotated as a cadmium resistance protein. Accession OMNI|NTL01HS00542 from Halobacterium which scores above trusted for this model is annotated as "molybdenum-binding protein" although no evidence can be found for this classification [Cellular processes, Detoxification, Transport and binding proteins, Cations and iron carrying compounds]. Length = 572

>gnl|CDD|234905 PRK01122, PRK01122, potassium-transporting ATPase subunit B; Provisional

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 23/51 (45%), Positives = 31/51 (60%), Gaps = 3/51 (5%)

Query: 10  GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGF-KVDNSSLTGESEP 59
           G    V A ++  GD+V V+ G+ IPAD  +IE  G   VD S++TGES P
Sbjct: 113 GAAEEVPATELRKGDIVLVEAGEIIPADGEVIE--GVASVDESAITGESAP 161

Length = 679

>gnl|CDD|225126 COG2216, KdpB, High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 27/69 (39%), Positives = 40/69 (57%), Gaps = 4/69 (5%)

Query: 3   FATVIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
            A ++R  G    V A ++  GD+V V+ G+ IP+D  +IE     VD S++TGES P  
Sbjct: 105 IARLLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAPVI 163

Query: 62  R--GVDFTN 68
           R  G DF++
Sbjct: 164 RESGGDFSS 172

Length = 681

>gnl|CDD|233513 TIGR01657, P-ATPase-V, P-type ATPase of unknown pump specificity (type V)

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)

Query: 5   TVIRQGEKLTVRAEDIVLGDVVDVKF--GDRIPADIRIIECRGFKVDNSSLTGESEPQSR 62
            VIR G+ +T+ ++++V GD+V +       +P D  ++      V+ S LTGES P  +
Sbjct: 232 IVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGSCI-VNESMLTGESVPVLK 290

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in. Length = 1054

>gnl|CDD|130561 TIGR01497, kdpB, K+-transporting ATPase, B subunit

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 27/67 (40%), Positives = 38/67 (56%), Gaps = 4/67 (5%)

Query: 3   FATVIRQGEKL-TVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQS 61
           FA ++R    +  V A+ +  GD+V V+ GD IP D  +IE     VD S++TGES P  
Sbjct: 106 FAKLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIE-GVASVDESAITGESAPVI 164

Query: 62  R--GVDF 66
           +  G DF
Sbjct: 165 KESGGDF 171

This model describes the P-type ATPase subunit of the complex responsible for translocating potassium ions across biological membranes in microbes. In E. coli and other species, this complex consists of the proteins KdpA, KdpB, KdpC and KdpF. KdpB is the ATPase subunit, while KdpA is the potassium-ion translocating subunit. The function of KdpC is unclear, although cit has been suggested to couple the ATPase subunit to the ion-translocating subunit , while KdpF serves to stabilize the complex. The potassium P-type ATPases have been characterized as Type IA based on a phylogenetic analysis which places this clade closest to the heavy-metal translocating ATPases (Type IB). Others place this clade closer to the Na+/K+ antiporter type (Type IIC) based on physical characteristics. This model is very clear-cut, with a strong break between trusted hits and noise. All members of the seed alignment, from Clostridium, Anabaena and E. coli are in the characterized table. One sequence above trusted, OMNI|NTL01TA01282, is apparently mis-annotated in the primary literature, but properly annotated by TIGR [Transport and binding proteins, Cations and iron carrying compounds]. Length = 675

>gnl|CDD|184448 PRK14010, PRK14010, potassium-transporting ATPase subunit B; Provisional

 Score = 36.2 bits (83), Expect = 0.001
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 3/61 (4%)

Query: 10  GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP--QSRGVDFT 67
           G    + A D+  G +V V  G++IP D ++I+     VD S++TGES P  +  G DF 
Sbjct: 113 GSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESAITGESAPVIKESGGDFD 171

Query: 68  N 68
           N
Sbjct: 172 N 172

Length = 673

>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 2/59 (3%)

Query: 6   VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGV 64
           V  +GEK +V   D+  G ++ +  GDR+P D  I +   + +D + LTGE  PQ +G 
Sbjct: 328 VTDEGEK-SVPLADVQPGMLLRLTTGDRVPVDGEITQGEAW-LDEAMLTGEPIPQQKGE 384

Length = 834

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	102
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	99.95
PF00122	230	E1-E2_ATPase: E1-E2 ATPase p-type cation-transport	99.95
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	99.94
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	99.94
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	99.94
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	99.94
KOG0205|consensus	942		99.94
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	99.94
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	99.94
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	99.94
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	99.93
PRK15122	903	magnesium-transporting ATPase; Provisional	99.93
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	99.93
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	99.92
KOG0202|consensus	972		99.92
PRK14010	673	potassium-transporting ATPase subunit B; Provision	99.91
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	99.91
PRK01122	679	potassium-transporting ATPase subunit B; Provision	99.91
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	99.91
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	99.9
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	99.9
PRK10671	834	copA copper exporting ATPase; Provisional	99.9
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	99.88
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	99.88
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	99.88
KOG0204|consensus	1034		99.87
KOG0208|consensus	1140		99.86
KOG0203|consensus	1019		99.85
PLN03190	1178	aminophospholipid translocase; Provisional	99.82
KOG0207|consensus	951		99.79
KOG0209|consensus	1160		99.71
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	99.63
KOG0210|consensus	1051		99.48
KOG0206|consensus	1151		99.31
KOG4383|consensus	1354		88.66
PF03120	82	DNA_ligase_OB: NAD-dependent DNA ligase OB-fold do	83.41
PF01455	68	HupF_HypC: HupF/HypC family; InterPro: IPR001109 T	81.23
cd00081	136	Hint Hedgehog/Intein domain, found in Hedgehog pro	81.06

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=99.95  E-value=1.4e-27  Score=192.86  Aligned_cols=100  Identities=36%  Similarity=0.509  Sum_probs=90.0

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC----CCC-CCCccc
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT----NDN-PLETKN   76 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~----~~~-~~~~~~   76 (102)
                      .+++|+|+|+++.|++++|+|||+|.+++||+||||++|+++.+|.||||+|||||.|+.|.+...    ... ..+..|
T Consensus       118 ~~~~ViRdg~~~~I~a~eLVpGDIv~L~~Gd~VPAD~rLi~~~~L~VDES~LTGES~pV~K~~~~~~~~~~~~~~~d~~n  197 (1053)
T TIGR01523       118 PMAHVIRNGKSDAIDSHDLVPGDICLLKTGDTIPADLRLIETKNFDTDEALLTGESLPVIKDAHATFGKEEDTPIGDRIN  197 (1053)
T ss_pred             CceEEEeCCeeeecCHhhCCCCCEEEECCCCEeeccEEEEEeCceEEEchhhcCCCCceeccccccccccccCCcccCCC
Confidence            368999999999999999999999999999999999999999889999999999999999986532    112 235679


Q ss_pred             EEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          77 LGFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        77 ~v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      ++|+||.|.+|++.++|++||.+|.
T Consensus       198 ~lf~GT~V~~G~g~~vVvatG~~T~  222 (1053)
T TIGR01523       198 LAFSSSAVTKGRAKGICIATALNSE  222 (1053)
T ss_pred             ccccCceEEeeeEEEEEEEecCccH
Confidence            9999999999999999999999985

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>PF00122 E1-E2_ATPase: E1-E2 ATPase p-type cation-transporting ATPase superfamily signature H+-transporting ATPase (proton pump) signature sodium/potassium-transporting ATPase signature; InterPro: IPR008250 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.95  E-value=2.2e-27  Score=163.43  Aligned_cols=93  Identities=33%  Similarity=0.438  Sum_probs=82.6

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEe-eCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIE-CRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~-~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .+.|+|+|+++.+++++|+|||+|.+++||.+||||++++ +. +.+|||++|||+.|+.|.+.     +++.+|.+|+|
T Consensus        35 ~~~v~r~~~~~~i~~~~L~~GDiI~l~~g~~vPaD~~ll~~g~-~~vd~s~ltGes~pv~k~~~-----~~~~~~~i~~G  108 (230)
T PF00122_consen   35 KVTVIRDGRWQKIPSSELVPGDIIILKAGDIVPADGILLESGS-AYVDESALTGESEPVKKTPL-----PLNPGNIIFAG  108 (230)
T ss_dssp             EEEEEETTEEEEEEGGGT-TTSEEEEETTEBESSEEEEEESSE-EEEECHHHHSBSSEEEESSS-----CCCTTTEE-TT
T ss_pred             cEEEEeccccccchHhhccceeeeecccccccccCccceeccc-cccccccccccccccccccc-----cccccchhhcc
Confidence            3889999999999999999999999999999999999999 76 79999999999999999943     33344999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|+++++|++||.+|+
T Consensus       109 s~v~~g~~~~~Vi~tG~~t~  128 (230)
T PF00122_consen  109 SIVVSGWGIGVVIATGSDTK  128 (230)
T ss_dssp             EEEEEEEEEEEEEE-GGGSH
T ss_pred             ccccccccccccceeeeccc
Confidence            99999999999999999984

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the actuator (A) domain, and some transmembrane helices found in P-type ATPases []. It contains the TGES-loop which is essential for the metal ion binding which results in tight association between the A and P (phosphorylation) domains []. It does not contain the phosphorylation site. It is thought that the large movement of the actuator domain, which is transmitted to the transmembrane helices, is essential to the long distance coupling between formation/decomposition of the acyl phosphate in the cytoplasmic P-domain and the changes in the ion-binding sites buried deep in the membranous region []. This domain has a modulatory effect on the phosphoenzyme processing steps through its nucleotide binding [],[]. P-type (or E1-E2-type) ATPases that form an aspartyl phosphate intermediate in the course of ATP hydrolysis, can be divided into 4 major groups []: (1) Ca2+-transporting ATPases; (2) Na+/K+- and gastric H+/K+-transporting ATPases; (3) plasma membrane H+-transporting ATPases (proton pumps) of plants, fungi and lower eukaryotes; and (4) all bacterial P-type ATPases, except the g2+-ATPase of Salmonella typhimurium, which is more similar to the eukaryotic sequences. However, great variety of sequence analysis methods results in diversity of classification. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0000166 nucleotide binding, 0046872 metal ion binding; PDB: 2XZB_A 1MHS_B 3TLM_A 3A3Y_A 2ZXE_A 3NAL_A 3NAM_A 3NAN_A 2YJ6_B 2IYE_A ....

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=99.94  E-value=5.9e-27  Score=184.41  Aligned_cols=90  Identities=33%  Similarity=0.514  Sum_probs=86.7

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .+++|+|+|+++.+++++|+|||+|.+++||+|||||++++++++.+|||+|||||.|+.|.++          |.+|+|
T Consensus        92 ~~~~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~vi~g~~~~VDeS~LTGES~PV~K~~~----------~~v~aG  161 (755)
T TIGR01647        92 PKARVLRDGKWQEIPASELVPGDVVRLKIGDIVPADCRLFEGDYIQVDQAALTGESLPVTKKTG----------DIAYSG  161 (755)
T ss_pred             CeEEEEECCEEEEEEhhhCcCCCEEEECCCCEEeceEEEEecCceEEEcccccCCccceEeccC----------Ceeecc
Confidence            4688999999999999999999999999999999999999998679999999999999999998          999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|++.++|++||.+|+
T Consensus       162 T~v~~G~~~~~V~~tG~~T~  181 (755)
T TIGR01647       162 STVKQGEAEAVVTATGMNTF  181 (755)
T ss_pred             CEEEccEEEEEEEEcCCccH
Confidence            99999999999999999986

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=99.94  E-value=6.1e-27  Score=188.50  Aligned_cols=100  Identities=59%  Similarity=0.877  Sum_probs=94.0

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .+++|+|+|+++.+++++|+|||+|.+++|++|||||+++++++|.||||+|||||.|+.|.++.....+++..|++|+|
T Consensus       141 ~~~~ViRdg~~~~I~~~~lv~GDiv~l~~Gd~IPaD~~il~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~l~~G  220 (997)
T TIGR01106       141 QQALVIRDGEKMSINAEQVVVGDLVEVKGGDRIPADLRIISAQGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFS  220 (997)
T ss_pred             CeeEEEECCEEEEeeHHHCCCCCEEEECCCCEEeeeEEEEEccCcEEEccccCCCCCceeccCCCcccCccccCCeEEec
Confidence            36899999999999999999999999999999999999999987899999999999999998876556678889999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.+.++|++||.+|+
T Consensus       221 t~v~~G~~~~~V~~tG~~T~  240 (997)
T TIGR01106       221 TNCVEGTARGIVVNTGDRTV  240 (997)
T ss_pred             cEeeeeeEEEEEEEccccch
Confidence            99999999999999999986

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=99.94  E-value=1.3e-26  Score=184.62  Aligned_cols=100  Identities=35%  Similarity=0.523  Sum_probs=91.1

Q ss_pred             cEEEEEe------CCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC---CCCCC
Q psy2751           2 EFATVIR------QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT---NDNPL   72 (102)
Q Consensus         2 ~~~~v~r------~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~---~~~~~   72 (102)
                      .+++|+|      +|+++.+++++|+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.++..   .....
T Consensus       125 ~~~~V~R~~~~~~dg~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~  204 (867)
T TIGR01524       125 NTATVLRVINENGNGSMDEVPIDALVPGDLIELAAGDIIPADARVISARDLFINQSALTGESLPVEKFVEDKRARDPEIL  204 (867)
T ss_pred             CeeEEEEecccCCCCeEEEEEhhcCCCCCEEEECCCCEEcccEEEEecCceEEEcccccCCCCcccccCCcccccccccc
Confidence            3578999      89999999999999999999999999999999999878999999999999999998742   22345


Q ss_pred             CcccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          73 ETKNLGFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        73 ~~~~~v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      +..|.+|+||.+.+|.+.++|++||.+|+
T Consensus       205 ~~~n~vfaGT~v~~G~~~~~V~~tG~~T~  233 (867)
T TIGR01524       205 ERENLCFMGTNVLSGHAQAVVLATGSSTW  233 (867)
T ss_pred             ccccceecCCeEEEeEEEEEEEEEcCccH
Confidence            67899999999999999999999999985

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=99.94  E-value=1.1e-26  Score=185.40  Aligned_cols=100  Identities=38%  Similarity=0.560  Sum_probs=91.1

Q ss_pred             cEEEEEeC------CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC---CCCCC
Q psy2751           2 EFATVIRQ------GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT---NDNPL   72 (102)
Q Consensus         2 ~~~~v~r~------g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~---~~~~~   72 (102)
                      .+++|+|+      |+++.|++++|+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.++..   .....
T Consensus       159 ~~a~ViR~g~~~~~g~~~~I~~~eLvpGDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~  238 (902)
T PRK10517        159 NTATVLRVINDKGENGWLEIPIDQLVPGDIIKLAAGDMIPADLRILQARDLFVAQASLTGESLPVEKFATTRQPEHSNPL  238 (902)
T ss_pred             CeEEEEECCccCCCCeEEEEEHHhCCCCCEEEECCCCEEeeeEEEEEcCceEEEecCcCCCCCceecccccccccccCcc
Confidence            46889999      6899999999999999999999999999999999878999999999999999998752   22356


Q ss_pred             CcccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          73 ETKNLGFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        73 ~~~~~v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      +..|.+|+||.+.+|++.++|++||.+|+
T Consensus       239 ~~~n~vfaGT~V~~G~~~~vV~atG~~T~  267 (902)
T PRK10517        239 ECDTLCFMGTNVVSGTAQAVVIATGANTW  267 (902)
T ss_pred             ccccceeeCceEeeeeEEEEEEEeccccH
Confidence            77899999999999999999999999985

>KOG0205|consensus

Probab=99.94  E-value=2e-27  Score=181.69  Aligned_cols=90  Identities=32%  Similarity=0.473  Sum_probs=87.7

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .++.|+|||+|.+++++.|+||||+.++.|+++|||++|++++.++||+|+|||||.|+.|+++          +.+|+|
T Consensus       134 ~KakVlRDGkw~E~eAs~lVPGDIlsik~GdIiPaDaRLl~gD~LkiDQSAlTGESLpvtKh~g----------d~vfSg  203 (942)
T KOG0205|consen  134 PKAKVLRDGKWSEQEASILVPGDILSIKLGDIIPADARLLEGDPLKIDQSALTGESLPVTKHPG----------DEVFSG  203 (942)
T ss_pred             cccEEeecCeeeeeeccccccCceeeeccCCEecCccceecCCccccchhhhcCCccccccCCC----------Cceecc
Confidence            3678999999999999999999999999999999999999999999999999999999999999          899999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.|.+|++.++|++||.+||
T Consensus       204 STcKqGE~eaVViATg~~TF  223 (942)
T KOG0205|consen  204 STCKQGEIEAVVIATGVHTF  223 (942)
T ss_pred             cccccceEEEEEEEecccee
Confidence            99999999999999999998

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=99.94  E-value=1.5e-26  Score=184.47  Aligned_cols=100  Identities=33%  Similarity=0.434  Sum_probs=90.5

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCC----CCCCCcccE
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTN----DNPLETKNL   77 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~----~~~~~~~~~   77 (102)
                      .+++|+|+|+++.|++++|+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.++...    ....+..|.
T Consensus       117 ~~~~ViRdg~~~~I~~~eLv~GDiv~l~~Gd~IPaDg~ii~g~~l~VDES~LTGES~pv~K~~~~~~~~~~~~~~~~~n~  196 (884)
T TIGR01522       117 PECHLIREGKLEHVLASTLVPGDLVCLSVGDRVPADLRIVEAVDLSIDESNLTGETTPVSKVTAPIPAATNGDLAERSNI  196 (884)
T ss_pred             CeeEEEECCEEEEEEHHHCccCCEEEecCCCEEeeeEEEEEcCceEEEcccccCCCcceecccccccccccccccccCce
Confidence            4688999999999999999999999999999999999999997689999999999999999887422    123466799


Q ss_pred             EEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          78 GFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        78 v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      +|+||.+.+|.+.++|++||.+|+
T Consensus       197 v~~GT~v~~G~~~~~V~~tG~~T~  220 (884)
T TIGR01522       197 AFMGTLVRCGHGKGIVVGTGSNTE  220 (884)
T ss_pred             EEeCCEEEeeeEEEEEEEecCccH
Confidence            999999999999999999999985

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.94  E-value=7.8e-27  Score=186.60  Aligned_cols=100  Identities=35%  Similarity=0.489  Sum_probs=91.0

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCC--CCC--CCcccE
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTN--DNP--LETKNL   77 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~--~~~--~~~~~~   77 (102)
                      .+++|+|+|+++.+++++|+|||+|.+++||+||||++|+++++++||||+|||||.|+.|.+....  +.+  ++..|+
T Consensus       140 ~~~~V~R~g~~~~i~a~eLVpGDiV~l~~gd~vPAD~rLl~~~~l~VdEs~LTGES~pv~K~~~~~~~~~~~~~~d~~n~  219 (917)
T COG0474         140 PKAKVLRDGKFVEIPASELVPGDIVLLEAGDVVPADLRLLESSDLEVDESALTGESLPVEKQALPLTKSDAPLGLDRDNM  219 (917)
T ss_pred             CceEEEeCCcEEEecHHHCCCCcEEEECCCCccccceEEEEecCceEEcccccCCCcchhccccccccccccccCCccce
Confidence            3688999999999999999999999999999999999999999889999999999999999876432  222  367899


Q ss_pred             EEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          78 GFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        78 v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      +|+||.+.+|++.++|++||.+|.
T Consensus       220 l~sGt~V~~G~~~giVvaTG~~T~  243 (917)
T COG0474         220 LFSGTTVVSGRAKGIVVATGFETE  243 (917)
T ss_pred             EEeCCEEEcceEEEEEEEEcCccH
Confidence            999999999999999999999985

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=99.94  E-value=1.5e-26  Score=185.07  Aligned_cols=100  Identities=34%  Similarity=0.488  Sum_probs=90.5

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCC---CCCCCcccEE
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTN---DNPLETKNLG   78 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~---~~~~~~~~~v   78 (102)
                      .+++|+|+|+++.+++++|+|||+|.+++||.|||||++++++.|.+|||+|||||.|+.|.++...   ..+.+.+|++
T Consensus        73 ~~~~ViRdg~~~~I~~~~Lv~GDiv~l~~Gd~IPaD~~ll~~~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~~n~l  152 (917)
T TIGR01116        73 EHAKVLRDGRWSVIKAKDLVPGDIVELAVGDKVPADIRVLSLKTLRVDQSILTGESVSVNKHTESVPDERAVNQDKKNML  152 (917)
T ss_pred             CceEEEECCEEEEEEHHHCCCCCEEEECCCCEeeccEEEEEecceEEEcccccCCCCcccccccccCccccCccccccee
Confidence            4689999999999999999999999999999999999999997789999999999999999876321   2244667999


Q ss_pred             EeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          79 FFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        79 ~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      |+||.+.+|++.++|++||.+|.
T Consensus       153 ~~GT~v~~G~~~~~V~~tG~~T~  175 (917)
T TIGR01116       153 FSGTLVVAGKARGVVVRTGMSTE  175 (917)
T ss_pred             eeCCEEecceEEEEEEEeCCCCH
Confidence            99999999999999999999985

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=99.93  E-value=4.7e-26  Score=182.56  Aligned_cols=92  Identities=33%  Similarity=0.477  Sum_probs=86.1

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .+++|+|+|+++.+++++|+|||+|.+++||+|||||++++|+.+.||||+|||||.|+.|.++.        .|++|+|
T Consensus       166 ~~~~ViRdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~li~g~~l~VdES~LTGES~pv~K~~~~--------~n~v~~G  237 (941)
T TIGR01517       166 QKIAVIRGGQEQQISIHDIVVGDIVSLSTGDVVPADGVFISGLSLEIDESSITGESDPIKKGAPK--------DSFLLSG  237 (941)
T ss_pred             CceEEEECCEEEEEeHHHCCCCCEEEECCCCEecccEEEEEcCcEEEEecccCCCCCcccccCCC--------CceEEeC
Confidence            36889999999999999999999999999999999999999955899999999999999998752        3789999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|++.++|++||.+|+
T Consensus       238 T~v~~G~~~~iV~~tG~~T~  257 (941)
T TIGR01517       238 TVVNEGSGRMLVTAVGVNSF  257 (941)
T ss_pred             CeEEeeEEEEEEEEeCCCcH
Confidence            99999999999999999985

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=99.93  E-value=2.1e-25  Score=178.27  Aligned_cols=100  Identities=32%  Similarity=0.504  Sum_probs=87.9

Q ss_pred             cEEEEEeC------CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccC---------
Q psy2751           2 EFATVIRQ------GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDF---------   66 (102)
Q Consensus         2 ~~~~v~r~------g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~---------   66 (102)
                      .+++|+|+      |+++.|++++|+|||+|.+++||+|||||++++++++.||||+|||||.|+.|.+..         
T Consensus       148 ~~~~V~Rdg~~~~~g~~~~I~~~eLv~GDiV~l~~Gd~IPaDg~li~g~~l~VDES~LTGES~PV~K~~~~~~~~~~~~~  227 (903)
T PRK15122        148 TTATVLRRGHAGAEPVRREIPMRELVPGDIVHLSAGDMIPADVRLIESRDLFISQAVLTGEALPVEKYDTLGAVAGKSAD  227 (903)
T ss_pred             CceEEEECCccCCCCeEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcCceEEEccccCCCCcceeeecccccccccccc
Confidence            35789999      478999999999999999999999999999999988899999999999999998620         


Q ss_pred             ----CCCCCCCcccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          67 ----TNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        67 ----~~~~~~~~~~~v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                          ......+..|.+|+||.+.+|++.++|++||.+|+
T Consensus       228 ~~~~~~~~~~~~~n~vfaGT~V~~G~~~~~V~atG~~T~  266 (903)
T PRK15122        228 ALADDEGSLLDLPNICFMGTNVVSGTATAVVVATGSRTY  266 (903)
T ss_pred             ccccccCCcccccceEEeCCEEEeeeEEEEEEEeccccH
Confidence                11123456799999999999999999999999985

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=99.93  E-value=2.6e-25  Score=179.83  Aligned_cols=98  Identities=24%  Similarity=0.284  Sum_probs=87.7

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEc--CCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC---CC-----CCC
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVK--FGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT---ND-----NPL   72 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~--~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~---~~-----~~~   72 (102)
                      .++|+|+|+|+.+++++|+|||+|.++  +|+++|||++|++|+ |.||||+|||||.|+.|.+...   .+     ...
T Consensus       230 ~v~V~Rdg~~~~I~s~eLvpGDiv~l~~~~g~~iPaD~~ll~g~-~~VdES~LTGES~Pv~K~~~~~~~~~~~~~~~~~~  308 (1054)
T TIGR01657       230 SVIVIRNGKWVTIASDELVPGDIVSIPRPEEKTMPCDSVLLSGS-CIVNESMLTGESVPVLKFPIPDNGDDDEDLFLYET  308 (1054)
T ss_pred             eEEEEECCEEEEEEcccCCCCCEEEEecCCCCEecceEEEEeCc-EEEecccccCCccceecccCCcccccccccccccc
Confidence            689999999999999999999999999  999999999999997 7999999999999999987532   11     123


Q ss_pred             CcccEEEeeCEEee-------eeEEEEEEEeCCCcc
Q psy2751          73 ETKNLGFFSTNAVE-------GNAFSSFVLLLANNF  101 (102)
Q Consensus        73 ~~~~~v~~Gt~v~~-------g~~~~~V~~tG~~t~  101 (102)
                      +..|++|+||.+.+       |.+.++|++||.+|+
T Consensus       309 ~~~~~lf~GT~v~~~~~~~g~g~~~~vV~~TG~~T~  344 (1054)
T TIGR01657       309 SKKHVLFGGTKILQIRPYPGDTGCLAIVVRTGFSTS  344 (1054)
T ss_pred             ccceEEEcCCEEEEEecCCCCCcEEEEEEeCCcccc
Confidence            56899999999985       789999999999996

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=99.92  E-value=1e-24  Score=166.43  Aligned_cols=89  Identities=33%  Similarity=0.426  Sum_probs=85.6

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ++++|+|+|+++.+++++|++||++.+++|+++||||++++|+. .||||+||||+.|+.|.++          +.+|+|
T Consensus        55 ~~~~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~ii~g~~-~vdes~lTGEs~pv~k~~g----------~~v~aG  123 (536)
T TIGR01512        55 DTARVLRGGSLEEVAVEELKVGDVVVVKPGERVPVDGVVLSGTS-TVDESALTGESVPVEKAPG----------DEVFAG  123 (536)
T ss_pred             CEEEEEECCEEEEEEHHHCCCCCEEEEcCCCEeecceEEEeCcE-EEEecccCCCCCcEEeCCC----------CEEEee
Confidence            46899999999999999999999999999999999999999984 9999999999999999998          899999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.++++|+++|.+|+
T Consensus       124 t~v~~G~~~~~V~~~g~~t~  143 (536)
T TIGR01512       124 AINLDGVLTIVVTKLPADST  143 (536)
T ss_pred             eEECCceEEEEEEEeccccH
Confidence            99999999999999999985

.

>KOG0202|consensus

Probab=99.92  E-value=6.8e-25  Score=171.01  Aligned_cols=98  Identities=40%  Similarity=0.633  Sum_probs=89.6

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCC---CC-CCCCcccEE
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFT---ND-NPLETKNLG   78 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~---~~-~~~~~~~~v   78 (102)
                      .++|+|+|+.+++++++|+||||+.++.||+||||.|+++..++.+|||+|||||.|+.|.....   +. ...++.|++
T Consensus       116 ~~~V~R~gk~~~i~A~eLVPGDiV~l~vGDkVPADlRl~e~~sl~iDeS~LTGEs~pv~K~t~~v~~~~~~~~~dk~Nia  195 (972)
T KOG0202|consen  116 MAHVLRSGKLQHILARELVPGDIVELKVGDKIPADLRLIEAKSLRIDESSLTGESEPVSKDTDAVPKDENADVQDKKNIA  195 (972)
T ss_pred             cceEEecCcccceehhccCCCCEEEEecCCccccceeEEeeeeeeeecccccCCcccccccCccccCCCCCccccceeeE
Confidence            57899999999999999999999999999999999999998889999999999999999976542   22 234779999


Q ss_pred             EeeCEEeeeeEEEEEEEeCCCc
Q psy2751          79 FFSTNAVEGNAFSSFVLLLANN  100 (102)
Q Consensus        79 ~~Gt~v~~g~~~~~V~~tG~~t  100 (102)
                      |+||.+..|+++++|+.||.+|
T Consensus       196 FsGT~V~~G~a~GIVi~TG~nT  217 (972)
T KOG0202|consen  196 FSGTLVVAGRAKGIVIGTGLNT  217 (972)
T ss_pred             eecceeecCceeEEEEeccccc
Confidence            9999999999999999999987

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=99.91  E-value=2e-24  Score=168.05  Aligned_cols=91  Identities=24%  Similarity=0.269  Sum_probs=83.1

Q ss_pred             EEE-EEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           3 FAT-VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         3 ~~~-v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      +++ |.|+|+++.+++++|++||+|.+++||+|||||++++|.. .+|||+|||||.|+.|.++.       ..+.+|+|
T Consensus       105 ~a~~v~rdg~~~~I~a~eLv~GDiV~v~~Gd~IPaDG~vieG~~-~VDESaLTGES~PV~K~~g~-------d~~~V~aG  176 (673)
T PRK14010        105 KARRIKQDGSYEMIDASDLKKGHIVRVATGEQIPNDGKVIKGLA-TVDESAITGESAPVIKESGG-------DFDNVIGG  176 (673)
T ss_pred             eEEEEEeCCEEEEEEHHHcCCCCEEEECCCCcccCCeEEEEcce-EEecchhcCCCCceeccCCC-------ccCeeecC
Confidence            354 6799999999999999999999999999999999999985 99999999999999998871       12349999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|++.++|+++|.+|+
T Consensus       177 T~v~~G~~~i~Vta~g~~T~  196 (673)
T PRK14010        177 TSVASDWLEVEITSEPGHSF  196 (673)
T ss_pred             ceeecceEEEEEEEecccCH
Confidence            99999999999999999986

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=99.91  E-value=3.1e-24  Score=164.32  Aligned_cols=89  Identities=30%  Similarity=0.367  Sum_probs=85.1

Q ss_pred             cEEEEEeCC-eEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751           2 EFATVIRQG-EKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF   80 (102)
Q Consensus         2 ~~~~v~r~g-~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~   80 (102)
                      ++++++|+| +++.+++++|++||+|.+++|+.|||||++++|+ +.+|||+||||+.|+.|.++          +.+|+
T Consensus        55 ~~~~v~r~~g~~~~i~~~~l~~GDiv~v~~G~~iP~Dg~vi~g~-~~vdes~lTGEs~pv~k~~g----------~~v~a  123 (556)
T TIGR01525        55 STARVLQGDGSEEEVPVEELQVGDIVIVRPGERIPVDGVVISGE-SEVDESALTGESMPVEKKEG----------DEVFA  123 (556)
T ss_pred             CEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEeccceEEEecc-eEEeehhccCCCCCEecCCc----------CEEee
Confidence            368899996 9999999999999999999999999999999998 49999999999999999998          89999


Q ss_pred             eCEEeeeeEEEEEEEeCCCcc
Q psy2751          81 STNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        81 Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      ||.+.+|.++++|+++|.+|+
T Consensus       124 Gt~v~~g~~~~~v~~~g~~t~  144 (556)
T TIGR01525       124 GTINGDGSLTIRVTKLGEDST  144 (556)
T ss_pred             ceEECCceEEEEEEEecccCH
Confidence            999999999999999999985

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=99.91  E-value=4.3e-24  Score=166.34  Aligned_cols=91  Identities=30%  Similarity=0.302  Sum_probs=83.7

Q ss_pred             EEEEEeCCe-EEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           3 FATVIRQGE-KLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         3 ~~~v~r~g~-~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      +++|+|+|+ ++.+++++|++||+|.+++||+|||||++++|.. .+|||+|||||.|+.|.++..       .+.+|+|
T Consensus       105 ~a~vir~g~~~~~V~~~eL~~GDiV~v~~Gd~IPaDG~vieG~a-~VDESaLTGES~PV~K~~G~~-------~~~V~aG  176 (679)
T PRK01122        105 FARKLREPGAAEEVPATELRKGDIVLVEAGEIIPADGEVIEGVA-SVDESAITGESAPVIRESGGD-------FSSVTGG  176 (679)
T ss_pred             eEEEEECCCEEEEEEHHHcCCCCEEEEcCCCEEEEEEEEEEccE-EEEcccccCCCCceEeCCCCc-------cCeEEec
Confidence            588999987 8999999999999999999999999999999985 999999999999999998721       1239999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|++.++|+++|.+|+
T Consensus       177 T~v~~G~~~i~Vta~g~~S~  196 (679)
T PRK01122        177 TRVLSDWIVIRITANPGESF  196 (679)
T ss_pred             eEEEeeeEEEEEEEecccCH
Confidence            99999999999999999986

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=99.91  E-value=7.4e-24  Score=162.56  Aligned_cols=89  Identities=28%  Similarity=0.308  Sum_probs=83.9

Q ss_pred             cEEEEEeC-CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751           2 EFATVIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF   80 (102)
Q Consensus         2 ~~~~v~r~-g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~   80 (102)
                      ++++++|+ |+++.+++++|++||+|.+++|++|||||++++|+. .+|||+|||||.|+.|.++          +.+|+
T Consensus        91 ~~a~~~~~~~~~~~v~~~~l~~GDii~v~~Ge~iP~Dg~v~~g~~-~vdes~lTGEs~pv~k~~g----------d~V~a  159 (562)
T TIGR01511        91 STATLLTKDGSIEEVPVALLQPGDIVKVLPGEKIPVDGTVIEGES-EVDESLVTGESLPVPKKVG----------DPVIA  159 (562)
T ss_pred             CEEEEEECCCeEEEEEHHHCCCCCEEEECCCCEecCceEEEECce-EEehHhhcCCCCcEEcCCC----------CEEEe
Confidence            46778875 677999999999999999999999999999999995 9999999999999999999          89999


Q ss_pred             eCEEeeeeEEEEEEEeCCCcc
Q psy2751          81 STNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        81 Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      ||.+.+|.+.++|+++|.+|+
T Consensus       160 Gt~~~~g~~~~~v~~~g~~t~  180 (562)
T TIGR01511       160 GTVNGTGSLVVRATATGEDTT  180 (562)
T ss_pred             eeEECCceEEEEEEEecCCCh
Confidence            999999999999999999985

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=99.90  E-value=1.1e-23  Score=165.75  Aligned_cols=89  Identities=30%  Similarity=0.364  Sum_probs=85.4

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ++++++|+|+++.+++++|++||+|.+++|++||+||++++|+. .+|||+|||||.|+.|.++          +.+|+|
T Consensus       243 ~~a~vir~g~~~~v~~~~l~~GDiv~v~~G~~IP~Dg~vi~g~~-~vdes~lTGEs~Pv~k~~G----------d~V~aG  311 (741)
T PRK11033        243 ETATRLRDGEREEVAIADLRPGDVIEVAAGGRLPADGKLLSPFA-SFDESALTGESIPVERATG----------EKVPAG  311 (741)
T ss_pred             CEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEecceEEEECcE-EeecccccCCCCCEecCCC----------CeeccC
Confidence            46889999999999999999999999999999999999999985 9999999999999999999          899999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.+.+.|+++|.+|+
T Consensus       312 t~~~~G~~~i~V~~~g~~s~  331 (741)
T PRK11033        312 ATSVDRLVTLEVLSEPGASA  331 (741)
T ss_pred             CEEcCceEEEEEEeccccCH
Confidence            99999999999999999985

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=99.90  E-value=1.4e-23  Score=163.31  Aligned_cols=91  Identities=30%  Similarity=0.313  Sum_probs=82.7

Q ss_pred             EEEEEe-CCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           3 FATVIR-QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         3 ~~~v~r-~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .++++| +|+++.+++++|++||+|.+++||+||+||++++|. +.+|||+|||||.|+.|.++...       ..+|+|
T Consensus       106 ~a~vlr~dg~~~~V~~~~L~~GDiV~V~~Gd~IPaDG~vieG~-~~VDESaLTGES~PV~K~~g~~~-------~~V~aG  177 (675)
T TIGR01497       106 FAKLLRDDGAIDKVPADQLKKGDIVLVEAGDVIPCDGEVIEGV-ASVDESAITGESAPVIKESGGDF-------ASVTGG  177 (675)
T ss_pred             eEEEEeeCCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEcc-EEEEcccccCCCCceeecCCCCc-------ceeecC
Confidence            367775 899999999999999999999999999999999998 59999999999999999987311       139999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|++.++|+++|.+|+
T Consensus       178 T~v~~G~~~i~Vt~~g~~S~  197 (675)
T TIGR01497       178 TRILSDWLVVECTANPGETF  197 (675)
T ss_pred             cEEEeeEEEEEEEEecccCH
Confidence            99999999999999999986

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>PRK10671 copA copper exporting ATPase; Provisional

Probab=99.90  E-value=1.3e-23  Score=166.88  Aligned_cols=89  Identities=24%  Similarity=0.296  Sum_probs=85.3

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ++++++|+|+++.++.++|++||+|.+++|++||+||++++|+ +.+|||+|||||.|+.|.++          +.+|+|
T Consensus       323 ~~a~~~~~~~~~~v~~~~l~~GD~v~v~~G~~iP~Dg~v~~g~-~~vdeS~lTGEs~pv~k~~g----------d~V~aG  391 (834)
T PRK10671        323 PTARVVTDEGEKSVPLADVQPGMLLRLTTGDRVPVDGEITQGE-AWLDEAMLTGEPIPQQKGEG----------DSVHAG  391 (834)
T ss_pred             CEEEEEeCCcEEEEEHHHcCCCCEEEEcCCCEeeeeEEEEEce-EEEeehhhcCCCCCEecCCC----------CEEEec
Confidence            4678899999999999999999999999999999999999998 59999999999999999999          899999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.+.+.|+++|.+|+
T Consensus       392 t~~~~G~~~~~v~~~g~~t~  411 (834)
T PRK10671        392 TVVQDGSVLFRASAVGSHTT  411 (834)
T ss_pred             ceecceeEEEEEEEEcCcCh
Confidence            99999999999999999985

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=99.88  E-value=1.2e-22  Score=153.67  Aligned_cols=88  Identities=35%  Similarity=0.432  Sum_probs=83.7

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ++++|+|+| ++.+++++|++||+|.+++||++||||++++|+ +.||||+|||||.|+.|.++          +.+|+|
T Consensus        35 ~~~~v~r~g-~~~V~~~~l~~GDiv~v~~G~~iP~Dg~vl~g~-~~vdes~LTGEs~pv~k~~g----------~~v~~g  102 (499)
T TIGR01494        35 ETVTVLRNG-WKEIPASDLVPGDIVLVKSGEIVPADGVLLSGS-CFVDESNLTGESVPVLKTAG----------DAVFAG  102 (499)
T ss_pred             CeEEEEECC-eEEEEHHHCCCCCEEEECCCCEeeeeEEEEEcc-EEEEcccccCCCCCeeeccC----------CccccC
Confidence            478999999 999999999999999999999999999999997 69999999999999999998          889999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      +.+.+|...+.|.++|.+|+
T Consensus       103 s~~~~G~~~~~v~~~~~~s~  122 (499)
T TIGR01494       103 TYVFNGTLIVVVSATGPNTF  122 (499)
T ss_pred             cEEeccEEEEEEEEeccccH
Confidence            99999999999999998874

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=99.88  E-value=1.2e-22  Score=158.66  Aligned_cols=89  Identities=34%  Similarity=0.449  Sum_probs=83.4

Q ss_pred             cEEEEEe-CCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751           2 EFATVIR-QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF   80 (102)
Q Consensus         2 ~~~~v~r-~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~   80 (102)
                      +++++++ ||+++.+++++|++||++.++|||+||+||++++|++ .+|||+|||||.|+.|.++          +.+|+
T Consensus       211 ~~A~~~~~~~~~~~v~v~~v~~GD~v~VrpGE~IPvDG~V~~G~s-~vDeS~iTGEs~PV~k~~G----------d~V~a  279 (713)
T COG2217         211 KTATVVRGDGEEEEVPVEEVQVGDIVLVRPGERIPVDGVVVSGSS-SVDESMLTGESLPVEKKPG----------DEVFA  279 (713)
T ss_pred             CEEEEEecCCcEEEEEHHHCCCCCEEEECCCCEecCCeEEEeCcE-EeecchhhCCCCCEecCCC----------CEEee
Confidence            4566666 4558999999999999999999999999999999997 9999999999999999999          99999


Q ss_pred             eCEEeeeeEEEEEEEeCCCcc
Q psy2751          81 STNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        81 Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      ||.+.+|.....|+++|.+|+
T Consensus       280 GtiN~~G~l~i~vt~~~~dt~  300 (713)
T COG2217         280 GTVNLDGSLTIRVTRVGADTT  300 (713)
T ss_pred             eEEECCccEEEEEEecCccCH
Confidence            999999999999999999985

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=99.88  E-value=7.2e-23  Score=165.80  Aligned_cols=100  Identities=22%  Similarity=0.320  Sum_probs=88.2

Q ss_pred             cEEEEEeC-CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEecccCC---------
Q psy2751           2 EFATVIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGVDFT---------   67 (102)
Q Consensus         2 ~~~~v~r~-g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~~~~---------   67 (102)
                      ++++|+|+ |+++.+++++|+|||+|.+++||.+|||++++++++    |.+|+|+||||+.|+.|.+...         
T Consensus        85 ~~~~v~~~~~~~~~i~~~~l~~GDiv~l~~g~~iPaD~~ll~ss~~~g~~~v~~s~l~GEs~~~~k~~~~~~~~~~~~~~  164 (1057)
T TIGR01652        85 RLTEVLEGHGQFVEIPWKDLRVGDIVKVKKDERIPADLLLLSSSEPDGVCYVETANLDGETNLKLRQALEETQKMLDEDD  164 (1057)
T ss_pred             cEEEEECCCCcEEEeeeecccCCCEEEEcCCCcccceEEEEeccCCCceEEEEeeccCCeecceEeecchhhhccCChhh
Confidence            46889997 799999999999999999999999999999999654    8999999999999999975310         


Q ss_pred             -----------------------------CCCCCCcccEEEeeCEEee-eeEEEEEEEeCCCcc
Q psy2751          68 -----------------------------NDNPLETKNLGFFSTNAVE-GNAFSSFVLLLANNF  101 (102)
Q Consensus        68 -----------------------------~~~~~~~~~~v~~Gt~v~~-g~~~~~V~~tG~~t~  101 (102)
                                                   ...+++.+|++|+||.+.+ |+++|+|++||++|.
T Consensus       165 ~~~~~~~i~~~~p~~~l~~F~G~~~~~~~~~~~l~~~N~l~rGs~l~nt~~~~gvVvyTG~~Tk  228 (1057)
T TIGR01652       165 IKNFSGEIECEQPNASLYSFQGNMTINGDRQYPLSPDNILLRGCTLRNTDWVIGVVVYTGHDTK  228 (1057)
T ss_pred             HhhceEEEEEcCCCCcceEEEEEEEECCCCcccCCHHHhHhcCCEecCCCeEEEEEEEEchhhh
Confidence                                         1135678899999999988 999999999999983

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>KOG0204|consensus

Probab=99.87  E-value=3.9e-22  Score=155.91  Aligned_cols=92  Identities=33%  Similarity=0.460  Sum_probs=85.8

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .++.|+|+|+.++++..+|++||++.++-||.+||||++++|.+|.+|||++||||.++.|.+..        .-++++|
T Consensus       220 ~k~~ViR~G~r~~isI~diVVGDIv~lk~GDqvPADGvli~gn~L~iDESSlTGESd~v~k~~~~--------dPfLlSG  291 (1034)
T KOG0204|consen  220 IKFQVIRGGRRQQISIYDLVVGDIVQLKIGDQVPADGVLIQGNSLKIDESSLTGESDHVQKSLDK--------DPFLLSG  291 (1034)
T ss_pred             eEEEEEECCEEEEEEEeeeeeccEEEeecCCccccceEEEeccceeEecccccCCCcceeccCCC--------CCeEeec
Confidence            36789999999999999999999999999999999999999988999999999999999997641        2589999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |++++|.+.++|+++|.+|.
T Consensus       292 Tkv~eGsgkMlVTaVGmnt~  311 (1034)
T KOG0204|consen  292 TKVMEGSGKMLVTAVGMNTQ  311 (1034)
T ss_pred             ceeecCcceEEEEEeeecch
Confidence            99999999999999999985

>KOG0208|consensus

Probab=99.86  E-value=3.5e-21  Score=152.12  Aligned_cols=99  Identities=25%  Similarity=0.290  Sum_probs=87.0

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEcC-CCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCC---------CCC
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVKF-GDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTND---------NPL   72 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~-g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~---------~~~   72 (102)
                      +|+|+|+|.|+.+.+++|+|||++.+.+ +-..|||++|++|+ |.+|||+|||||.|+.|.+.+...         ...
T Consensus       251 ~V~V~R~g~~~ti~S~eLVPGDil~i~~~~~~~PcDa~Li~g~-civNEsmLTGESVPv~K~~l~~~~~~~~~~~~~~~~  329 (1140)
T KOG0208|consen  251 PVTVIRDGFWETVDSSELVPGDILYIPPPGKIMPCDALLISGD-CIVNESMLTGESVPVTKTPLPMGTDSLDSITISMST  329 (1140)
T ss_pred             eEEEEECCEEEEEeccccccccEEEECCCCeEeecceEEEeCc-EEeecccccCCcccccccCCccccccCcCeeechhh
Confidence            6899999999999999999999999987 88899999999999 899999999999999999874111         123


Q ss_pred             CcccEEEeeCEEee------eeEEEEEEEeCCCccC
Q psy2751          73 ETKNLGFFSTNAVE------GNAFSSFVLLLANNFT  102 (102)
Q Consensus        73 ~~~~~v~~Gt~v~~------g~~~~~V~~tG~~t~~  102 (102)
                      ..+|.+|+||.+++      +.+.++|++||.+|.+
T Consensus       330 ~~rh~lfcGT~vlq~r~~~g~~v~a~V~RTGF~T~K  365 (1140)
T KOG0208|consen  330 NSRHTLFCGTKVLQARAYLGGPVLAMVLRTGFSTTK  365 (1140)
T ss_pred             cCcceeeccceEEEeecCCCCceEEEEEeccccccc
Confidence            67899999999976      4489999999999864

>KOG0203|consensus

Probab=99.85  E-value=1.5e-21  Score=152.48  Aligned_cols=100  Identities=58%  Similarity=0.879  Sum_probs=96.5

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ..++|+|+|....+..++|++||++.++.|+++|||.+++++..|++|+|+|||||+|..+.+...+.++++..|+-|.+
T Consensus       163 ~~~~ViRdg~k~~i~~eelVvGD~v~vk~GdrVPADiRiis~~g~~vdnsslTGesEP~~~~~~~t~~~~~Et~Ni~f~s  242 (1019)
T KOG0203|consen  163 QQALVIRDGEKMTINAEELVVGDLVEVKGGDRVPADIRIISATGCKVDNSSLTGESEPQTRSPEFTHENPLETRNIAFFS  242 (1019)
T ss_pred             hhheeeecceeEEechhhcccccceeeccCCcccceeEEEEecceeEeccccccccCCccCCccccccCchhheeeeeee
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.++++|++||.+|.
T Consensus       243 t~~veG~~~givi~tGd~Tv  262 (1019)
T KOG0203|consen  243 TNCVEGTGRGIVIATGDRTV  262 (1019)
T ss_pred             eEEecceEEEEEEecCCceE
Confidence            99999999999999999984

>PLN03190 aminophospholipid translocase; Provisional

Probab=99.82  E-value=5.5e-20  Score=150.08  Aligned_cols=100  Identities=18%  Similarity=0.211  Sum_probs=86.7

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEecccCC----------
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGVDFT----------   67 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~~~~----------   67 (102)
                      ++++|+|+|+++.+++++|++||+|.+++||++|||+++++++.    |+||+|+||||+.|+.|.+...          
T Consensus       171 ~~~~v~~~~~~~~i~~~~i~vGDiv~v~~ge~iPaD~~ll~Ss~~~G~~~Vdts~LdGEt~~k~k~~~~~~~~~~~~~~~  250 (1178)
T PLN03190        171 RLAWVLVDDQFQEKKWKDIRVGEIIKIQANDTLPCDMVLLSTSDPTGVAYVQTINLDGESNLKTRYAKQETLSKIPEKEK  250 (1178)
T ss_pred             cEEEEEECCeEEEEeHHHCCCCCEEEECCCCEeeeeEEEEeccCCCceEEEEccccCCeeeeeEecccchhhhcchhhhh
Confidence            46889999999999999999999999999999999999999443    7999999999999999976411          


Q ss_pred             -------------------------CCCCCCcccEEEeeCEEeee-eEEEEEEEeCCCcc
Q psy2751          68 -------------------------NDNPLETKNLGFFSTNAVEG-NAFSSFVLLLANNF  101 (102)
Q Consensus        68 -------------------------~~~~~~~~~~v~~Gt~v~~g-~~~~~V~~tG~~t~  101 (102)
                                               ...+++.+|++++||.+.+. +++|+|++||++|-
T Consensus       251 ~~~~i~~e~Pn~~l~~F~G~i~~~~~~~~l~~~n~llRG~~LrnT~~i~GvVVYTG~dTK  310 (1178)
T PLN03190        251 INGLIKCEKPNRNIYGFQANMEVDGKRLSLGPSNIILRGCELKNTAWAIGVAVYCGRETK  310 (1178)
T ss_pred             ceEEEEEeCCCccceeEEEEEEECCCcccCCccceeeccceecCCceEEEEEEEechhhh
Confidence                                     01256778999999999665 69999999999983

>KOG0207|consensus

Probab=99.79  E-value=1.9e-19  Score=141.65  Aligned_cols=88  Identities=25%  Similarity=0.381  Sum_probs=83.0

Q ss_pred             EEEEEeCCe-EEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           3 FATVIRQGE-KLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         3 ~~~v~r~g~-~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ++.++.+|+ +++|+.+.|++||++.+.||++||+||++++|+. .||||.+|||++|+.|+++          +.+.+|
T Consensus       379 ~a~ii~~g~~e~eI~v~lvq~gdivkV~pG~kiPvDG~Vv~Gss-~VDEs~iTGEs~PV~Kk~g----------s~ViaG  447 (951)
T KOG0207|consen  379 KATIIEDGSEEKEIPVDLVQVGDIVKVKPGEKIPVDGVVVDGSS-EVDESLITGESMPVPKKKG----------STVIAG  447 (951)
T ss_pred             cceEeecCCcceEeeeeeeccCCEEEECCCCccccccEEEeCce-eechhhccCCceecccCCC----------Ceeeee
Confidence            566777775 7899999999999999999999999999999995 9999999999999999999          999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.....++++|.+|.
T Consensus       448 siN~nG~l~VkaT~~g~dtt  467 (951)
T KOG0207|consen  448 SINLNGTLLVKATKVGGDTT  467 (951)
T ss_pred             eecCCceEEEEEEeccccch
Confidence            99999999999999999974

>KOG0209|consensus

Probab=99.71  E-value=5.2e-17  Score=127.41  Aligned_cols=99  Identities=21%  Similarity=0.265  Sum_probs=83.9

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEcC---CCEeCCceEEEeeCceEEEccccCCCCccEEecccCCC--C-----CCC
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVKF---GDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTN--D-----NPL   72 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~---g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~--~-----~~~   72 (102)
                      .+.|+|+++|+.+..++|.|||++.+..   ...+|||..|+.|+ |.||||+|||||.|.-|.+....  +     ...
T Consensus       254 ~I~v~R~kKW~~l~seeLlPgDvVSI~r~~ed~~vPCDllLL~Gs-ciVnEaMLtGESvPl~KE~Ie~~~~d~~ld~~~d  332 (1160)
T KOG0209|consen  254 TINVYRNKKWVKLMSEELLPGDVVSIGRGAEDSHVPCDLLLLRGS-CIVNEAMLTGESVPLMKESIELRDSDDILDIDRD  332 (1160)
T ss_pred             EEEEEecCcceeccccccCCCceEEeccCcccCcCCceEEEEecc-eeechhhhcCCCccccccccccCChhhhcccccc
Confidence            4678999999999999999999999965   34699999999999 79999999999999999885321  1     123


Q ss_pred             CcccEEEeeCEEee-------------eeEEEEEEEeCCCccC
Q psy2751          73 ETKNLGFFSTNAVE-------------GNAFSSFVLLLANNFT  102 (102)
Q Consensus        73 ~~~~~v~~Gt~v~~-------------g~~~~~V~~tG~~t~~  102 (102)
                      ++.+++|.||++.+             |-+.+.|++||.+|-|
T Consensus       333 ~k~hVlfGGTkivQht~p~~~slk~pDggc~a~VlrTGFeTSQ  375 (1160)
T KOG0209|consen  333 DKLHVLFGGTKIVQHTPPKKASLKTPDGGCVAYVLRTGFETSQ  375 (1160)
T ss_pred             cceEEEEcCceEEEecCCccccccCCCCCeEEEEEeccccccC
Confidence            46679999999964             5689999999999964

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=99.63  E-value=3.8e-16  Score=117.94  Aligned_cols=88  Identities=28%  Similarity=0.290  Sum_probs=78.9

Q ss_pred             EEeC-CeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEeeCEE
Q psy2751           6 VIRQ-GEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFSTNA   84 (102)
Q Consensus         6 v~r~-g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~Gt~v   84 (102)
                      .+++ |+++.+++.+|..||+|++..||.||+||.+++|.+ .||||++||||.|+-|.++-.       ..-+-.||.+
T Consensus       108 ~l~~~g~~~~v~st~Lk~gdiV~V~age~IP~DGeVIeG~a-sVdESAITGESaPViresGgD-------~ssVtGgT~v  179 (681)
T COG2216         108 LLRADGSIEMVPATELKKGDIVLVEAGEIIPSDGEVIEGVA-SVDESAITGESAPVIRESGGD-------FSSVTGGTRV  179 (681)
T ss_pred             HhcCCCCeeeccccccccCCEEEEecCCCccCCCeEEeeee-ecchhhccCCCcceeeccCCC-------cccccCCcEE
Confidence            4444 899999999999999999999999999999999997 999999999999999998732       2347789999


Q ss_pred             eeeeEEEEEEEeCCCcc
Q psy2751          85 VEGNAFSSFVLLLANNF  101 (102)
Q Consensus        85 ~~g~~~~~V~~tG~~t~  101 (102)
                      .+.+.+..+++...+||
T Consensus       180 ~SD~l~irita~pG~sF  196 (681)
T COG2216         180 LSDWLKIRITANPGETF  196 (681)
T ss_pred             eeeeEEEEEEcCCCccH
Confidence            99999999999888877

>KOG0210|consensus

Probab=99.48  E-value=1.7e-13  Score=106.62  Aligned_cols=96  Identities=24%  Similarity=0.316  Sum_probs=79.8

Q ss_pred             EEE-eCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEeccc--------------
Q psy2751           5 TVI-RQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGVD--------------   65 (102)
Q Consensus         5 ~v~-r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~~--------------   65 (102)
                      +++ |+|.... +++++++||+|.++.+++||||.++|..++    |++-+--|+||+.++.|-+-              
T Consensus       166 ~~ltr~~~~~~-~Ss~i~vGDvi~v~K~~RVPADmilLrTsd~sg~~FiRTDQLDGETDWKLrl~vp~tQ~l~~~~el~~  244 (1051)
T KOG0210|consen  166 TKLTRDGTRRE-PSSDIKVGDVIIVHKDERVPADMILLRTSDKSGSCFIRTDQLDGETDWKLRLPVPRTQHLTEDSELME  244 (1051)
T ss_pred             eeeccCCcccc-cccccccccEEEEecCCcCCcceEEEEccCCCCceEEeccccCCcccceeeccchhhccCCcccchhe
Confidence            344 4554433 899999999999999999999999999654    89999999999999888653              


Q ss_pred             -----------------------CCCCCCCCcccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          66 -----------------------FTNDNPLETKNLGFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        66 -----------------------~~~~~~~~~~~~v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                                             .+...+++-+|.+.++|.+.+|.++++|++||.+|-
T Consensus       245 i~v~Ae~P~kdIh~F~Gt~~~~d~~~~~~LsventLWanTVvAs~t~~gvVvYTG~dtR  303 (1051)
T KOG0210|consen  245 ISVYAEKPQKDIHSFVGTFTITDSDKPESLSVENTLWANTVVASGTAIGVVVYTGRDTR  303 (1051)
T ss_pred             EEEeccCcchhhHhhEEEEEEecCCCCCcccccceeeeeeeEecCcEEEEEEEecccHH
Confidence                                   011236788999999999999999999999999874

>KOG0206|consensus

Probab=99.31  E-value=5.8e-12  Score=102.66  Aligned_cols=100  Identities=19%  Similarity=0.279  Sum_probs=85.1

Q ss_pred             cEEEEEeCCe-EEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc----eEEEccccCCCCccEEecccCC---------
Q psy2751           2 EFATVIRQGE-KLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG----FKVDNSSLTGESEPQSRGVDFT---------   67 (102)
Q Consensus         2 ~~~~v~r~g~-~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~----~~vd~s~ltGEs~pv~k~~~~~---------   67 (102)
                      .+++|.|++. +....|+++.+||+|.+..++.+|||.++|.++.    |++++++|+||+..+.|+....         
T Consensus       115 ~~~~v~~~~~~~~~~~wk~~~vGd~v~v~~~~~~paD~llLsss~~~~~cyveT~nLDGEtnLK~k~~l~~~~~~~~~~~  194 (1151)
T KOG0206|consen  115 RKVEVLRGDGCFVEKKWKDVRVGDIVRVEKDEFVPADLLLLSSSDEDGICYVETANLDGETNLKVKQALECTSKLDSEDS  194 (1151)
T ss_pred             ceeEEecCCceeeeeccceeeeeeEEEeccCCccccceEEecCCCCCceeEEEEeecCCccccceeeehhhhhccccccc
Confidence            4678888643 8999999999999999999999999999999875    9999999999999998865310         


Q ss_pred             ---------------------------CCC-CCCcccEEEeeCEEeeee-EEEEEEEeCCCcc
Q psy2751          68 ---------------------------NDN-PLETKNLGFFSTNAVEGN-AFSSFVLLLANNF  101 (102)
Q Consensus        68 ---------------------------~~~-~~~~~~~v~~Gt~v~~g~-~~~~V~~tG~~t~  101 (102)
                                                 ... |+..+|++++|+.+.+.+ ++++|+.+|++|.
T Consensus       195 ~~~~~~~i~cE~p~~~ly~f~g~l~~~~~~~pl~~~~~Llrg~~lrNT~~v~G~vv~tG~dtK  257 (1151)
T KOG0206|consen  195 LKNFKGWIECEDPNANLYTFVGNLELQGQIYPLSPDNLLLRGSRLRNTEWVYGVVVFTGHDTK  257 (1151)
T ss_pred             ccccCCceEEcCCcccHhhhhhheeeccCCCCCcHHHcccCCceeccCcEEEEEEEEcCCcch
Confidence                                       011 778899999999997665 8899999999984

>KOG4383|consensus

Probab=88.66  E-value=0.24  Score=40.31  Aligned_cols=38  Identities=18%  Similarity=0.271  Sum_probs=34.1

Q ss_pred             EEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEee
Q psy2751           6 VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIEC   43 (102)
Q Consensus         6 v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~   43 (102)
                      -+|||+..++|..-|+.||||-++||+.-||.++=+++
T Consensus       160 afRDGhlm~lP~~LLVeGDiIa~RPGQeafan~~g~~d  197 (1354)
T KOG4383|consen  160 AFRDGHLMELPRILLVEGDIIAFRPGQEAFANCEGFDD  197 (1354)
T ss_pred             HhccCeeeecceeEEEeccEEEecCCccccccccccCC
Confidence            46999999999999999999999999999998765554

>PF03120 DNA_ligase_OB: NAD-dependent DNA ligase OB-fold domain; InterPro: IPR004150 DNA ligases catalyse the crucial step of joining the breaks in duplex DNA during DNA replication, repair and recombination, utilizing either ATP or NAD(+) as a cofactor []

Probab=83.41  E-value=0.5  Score=28.01  Aligned_cols=19  Identities=53%  Similarity=0.739  Sum_probs=15.2

Q ss_pred             ccCCCCCCEEEE-cCCCEeC
Q psy2751          17 AEDIVLGDVVDV-KFGDRIP   35 (102)
Q Consensus        17 ~~~l~~GDii~l-~~g~~vP   35 (102)
                      -.+|.+||.|.+ ++||.||
T Consensus        47 ~~~i~~Gd~V~V~raGdVIP   66 (82)
T PF03120_consen   47 ELDIRIGDTVLVTRAGDVIP   66 (82)
T ss_dssp             HTT-BBT-EEEEEEETTTEE
T ss_pred             HcCCCCCCEEEEEECCCccc
Confidence            468999999999 7999999

This family is a small domain found after the adenylation domain DNA_ligase_N in NAD+-dependent ligases (IPR001679 from INTERPRO). OB-fold domains generally are involved in nucleic acid binding.; GO: 0003911 DNA ligase (NAD+) activity, 0006260 DNA replication, 0006281 DNA repair; PDB: 2OWO_A 1TAE_A 3UQ8_A 1DGS_A 1V9P_B 3SGI_A.

>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site

Probab=81.23  E-value=7.3  Score=22.10  Aligned_cols=31  Identities=32%  Similarity=0.289  Sum_probs=21.8

Q ss_pred             EEEEEeCCeEEEEEc---cCCCCCCEEEEcCCCE
Q psy2751           3 FATVIRQGEKLTVRA---EDIVLGDVVDVKFGDR   33 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~---~~l~~GDii~l~~g~~   33 (102)
                      .+.|-..|..+++..   .++.+||.+++..|--
T Consensus        18 ~A~v~~~G~~~~V~~~lv~~v~~Gd~VLVHaG~A   51 (68)
T PF01455_consen   18 MAVVDFGGVRREVSLALVPDVKVGDYVLVHAGFA   51 (68)
T ss_dssp             EEEEEETTEEEEEEGTTCTSB-TT-EEEEETTEE
T ss_pred             EEEEEcCCcEEEEEEEEeCCCCCCCEEEEecChh
Confidence            455667788888764   5688999999999843

This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.

>cd00081 Hint Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e

Probab=81.06  E-value=3.1  Score=25.75  Aligned_cols=27  Identities=37%  Similarity=0.338  Sum_probs=22.4

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEc
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVK   29 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~   29 (102)
                      +.++.+++++.++++++|.+||.+.+.
T Consensus        73 ~~~~~~~~~~~~~~a~~l~~gd~l~~~   99 (136)
T cd00081          73 LLFVLEDGELKWVFASDLKPGDYVLVP   99 (136)
T ss_pred             EEEEEeCCeEEEEEHHHCCCCCEEEEc
Confidence            455666667889999999999999997

g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, and the flanking polypeptide sequences - the exteins - are joined by a peptide bond. In addition to the autocatalytic splicing domain, many inteins contain an inserted endonuclease domain, which plays a role in spreading inteins. Hedgehog proteins are a major class of intercellular signaling molecules, which control inductive interactions during animal development. The mature signaling forms of hedgehog proteins are the N-terminal fragments, which are covalently linked to cholesterol at their C-termini. This modification is the result of an autoprocessing step catalyzed by the C-terminal fragments, which are aligned here.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	102
3n23_A	992	Crystal Structure Of The High Affinity Complex Betw		4e-31
3b8e_A	998	Crystal Structure Of The Sodium-Potassium Pump Leng		5e-31
2zxe_A	1028	Crystal Structure Of The Sodium - Potassium Pump In		1e-28
3ixz_A	1034	Pig Gastric H+K+-Atpase Complexed With Aluminium Fl		1e-26
3ba6_A	994	Structure Of The Ca2e1p Phosphoenzyme Intermediate		1e-08
2dqs_A	995	Crystal Structure Of The Calcium Pump With Amppcp I		2e-08
1kju_A	994	Ca2+-Atpase In The E2 State Length = 994		2e-08
3tlm_A	992	Crystal Structure Of Endoplasmic Reticulum Ca2+-Atp		2e-08
3b8c_A	885	Crystal Structure Of A Plasma Membrane Proton Pump		2e-08
3j08_A	645	High Resolution Helical Reconstruction Of The Bacte		5e-06
3j09_A	723	High Resolution Helical Reconstruction Of The Bacte		5e-06
2hc8_A	113	Structure Of The A. Fulgidus Copa A-Domain Length =		7e-06
1mhs_A	920	Model Of Neurospora Crassa Proton Atpase Length = 9		1e-05

>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between Ouabain And The E2p Form Of The Sodium-Potassium Pump Length = 992

Iteration: 1
 Score =  129 bits (324), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)
Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK+++ AE++V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 138 ALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 197
Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 198 PDFTNENPLETRNIAFFSTNCVEGTA 223

>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump Length = 998

Iteration: 1
 Score =  129 bits (323), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/86 (69%), Positives = 73/86 (84%)
Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK+++ AE++V+GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 144 ALVIRNGEKMSINAEEVVVGDLVEVKGGDRIPADLRIISANGCKVDNSSLTGESEPQTRS 203
Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            DFTN+NPLET+N+ FFSTN VEG A
Sbjct: 204 PDFTNENPLETRNIAFFSTNCVEGTA 229

>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The E2.2k+.Pi State Length = 1028

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 58/86 (67%), Positives = 70/86 (81%)
Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK T+ AE +V GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 174 ALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRS 233
Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            +F+++NPLET+N+ FFSTN VEG A
Sbjct: 234 PEFSSENPLETRNIAFFSTNCVEGTA 259

>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride Length = 1034

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/86 (59%), Positives = 71/86 (82%)
Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           ATVIR G+K  + A+ +V+GD+V++K GDR+PADIRI++ +G KVDNSSLTGESEPQ+R 
Sbjct: 179 ATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRS 238
Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            + T+++PLET+N+ FFST  +EG A
Sbjct: 239 PECTHESPLETRNIAFFSTMCLEGTA 264

>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The Serca Ca2+-Atpase Length = 994

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 15  VRAEDIVLGDVVDVKFGDRIPADIRIIECRG--FKVDNSSLTGES---------EPQSRG 63
           ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES          P  R 
Sbjct: 140 IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRA 199
Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNAF 90
           V+       + KN+ F  TN   G A 
Sbjct: 200 VN------QDKKNMLFSGTNIAAGKAL 220

>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The Absence Of Calcium Length = 995

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 15  VRAEDIVLGDVVDVKFGDRIPADIRIIECRG--FKVDNSSLTGES---------EPQSRG 63
           ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES          P  R 
Sbjct: 141 IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRA 200
Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNAF 90
           V+       + KN+ F  TN   G A 
Sbjct: 201 VN------QDKKNMLFSGTNIAAGKAL 221

>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State Length = 994

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 15  VRAEDIVLGDVVDVKFGDRIPADIRIIECRG--FKVDNSSLTGES---------EPQSRG 63
           ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES          P  R 
Sbjct: 140 IKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRA 199
Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNAF 90
           V+       + KN+ F  TN   G A 
Sbjct: 200 VN------QDKKNMLFSGTNIAAGKAL 220

>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase (Serca) From Bovine Muscle Length = 992

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 34/87 (39%), Positives = 46/87 (52%), Gaps = 17/87 (19%)
Query: 15  VRAEDIVLGDVVDVKFGDRIPADIRIIECRG--FKVDNSSLTGES---------EPQSRG 63
           ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES          P  R 
Sbjct: 140 IKARDIVPGDIVEVAVGDKVPADIRILTIKSTTLRVDQSILTGESVSVIKHTEPVPDPRA 199
Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNAF 90
           V+       + KN+ F  TN   G A 
Sbjct: 200 VN------QDKKNMLFSGTNIAAGKAI 220

>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump Length = 885

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 6   VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSR 62
           V+R G+     A  +V GD+V +K GD IPAD R++E    KVD S+LTGES P ++
Sbjct: 134 VLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK 190

>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 645

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP--QS 61
           A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P  +S
Sbjct: 135 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKS 193
Query: 62  RG 63
           +G
Sbjct: 194 KG 195

>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial P-Type Atpase Copper Transporter Copa Length = 723

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP--QS 61
           A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P  +S
Sbjct: 213 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKS 271
Query: 62  RG 63
           +G
Sbjct: 272 KG 273

>pdb|2HC8|A Chain A, Structure Of The A. Fulgidus Copa A-Domain Length = 113

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Query: 4  ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP--QS 61
          A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P  +S
Sbjct: 14 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVPVLKS 72
Query: 62 RG 63
          +G
Sbjct: 73 KG 74

>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase Length = 920

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGF-KVDNSSLTGES 57
           A V+R G    + A ++V GD++ V+ G  IPAD RI+    F +VD S+LTGES
Sbjct: 180 AVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGES 234

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	102
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	2e-42
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	5e-42
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	1e-21
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	3e-21
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	1e-19
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	7e-12
2hc8_A	113	PACS, cation-transporting ATPase, P-type; copper,	8e-12
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	2e-11
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	5e-10
2kij_A	124	Copper-transporting ATPase 1; actuator, menkes dis	3e-09

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A 1iwc_A 1iwf_A Length = 1034

 Score =  145 bits (369), Expect = 2e-42
 Identities = 51/86 (59%), Positives = 71/86 (82%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           ATVIR G+K  + A+ +V+GD+V++K GDR+PADIRI++ +G KVDNSSLTGESEPQ+R 
Sbjct: 179 ATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRS 238

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            + T+++PLET+N+ FFST  +EG A
Sbjct: 239 PECTHESPLETRNIAFFSTMCLEGTA 264

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A Length = 1028

 Score =  145 bits (367), Expect = 5e-42
 Identities = 58/86 (67%), Positives = 70/86 (81%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
           A VIR GEK T+ AE +V GD+V+VK GDRIPAD+RII   G KVDNSSLTGESEPQ+R 
Sbjct: 174 ALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRS 233

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
            +F+++NPLET+N+ FFSTN VEG A
Sbjct: 234 PEFSSENPLETRNIAFFSTNCVEGTA 259

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ... Length = 995

 Score = 86.5 bits (215), Expect = 1e-21
 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 7/93 (7%)

Query: 4   ATVIRQGEKLT--VRAEDIVLGDVVDVKFGDRIPADIRI--IECRGFKVDNSSLTGESEP 59
             V R   K    ++A DIV GD+V+V  GD++PADIRI  I+    +VD S LTGES  
Sbjct: 128 GKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVS 187

Query: 60  QSRGVDFTNDN--PL-ETKNLGFFSTNAVEGNA 89
             +  +   D      + KN+ F  TN   G A
Sbjct: 188 VIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKA 220

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana} Length = 885

 Score = 85.8 bits (213), Expect = 3e-21
 Identities = 29/86 (33%), Positives = 41/86 (47%), Gaps = 10/86 (11%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRG 63
             V+R G+     A  +V GD+V +K GD IPAD R++E    KVD S+LTGES P ++ 
Sbjct: 132 TKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTK- 190

Query: 64  VDFTNDNPLETKNLGFFSTNAVEGNA 89
                          F  +   +G  
Sbjct: 191 ---------HPGQEVFSGSTCKQGEI 207

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1 Length = 920

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 11/88 (12%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGF-KVDNSSLTGESEPQSR 62
           A V+R G    + A ++V GD++ V+ G  IPAD RI+    F +VD S+LTGES    +
Sbjct: 180 AVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDK 239

Query: 63  GVDFTNDNPLETKNLGFFSTNAVEGNAF 90
                        +  F S+    G AF
Sbjct: 240 ----------HKGDQVFASSAVKRGEAF 257

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723

 Score = 59.1 bits (144), Expect = 7e-12
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP 59
           A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P
Sbjct: 213 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVP 267

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F Length = 113

 Score = 55.9 bits (136), Expect = 8e-12
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 4  ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP 59
          A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P
Sbjct: 14 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVP 68

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 645

 Score = 57.5 bits (140), Expect = 2e-11
 Identities = 22/56 (39%), Positives = 37/56 (66%), Gaps = 1/56 (1%)

Query: 4   ATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEP 59
           A VIR G+++ V  E++ +GD+V V+ G++IP D  ++E   + VD S ++GE  P
Sbjct: 135 AVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGESY-VDESMISGEPVP 189

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp} Length = 736

 Score = 53.7 bits (130), Expect = 5e-10
 Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 6   VIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVD 65
           +   G +  V  +++ +GD++ V+ G++IP D  + E R F VD S +TGE  P ++   
Sbjct: 230 IKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRSF-VDESMVTGEPIPVAKEAS 288

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens} Length = 124

 Score = 49.4 bits (119), Expect = 3e-09
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 7/62 (11%)

Query: 4  ATVIRQGEKLTVRAE------DIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGES 57
          AT++       + +E       +  GD++ V  G + P D R+IE     VD S +TGE+
Sbjct: 20 ATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHSM-VDESLITGEA 78

Query: 58 EP 59
           P
Sbjct: 79 MP 80

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	102
2hc8_A	113	PACS, cation-transporting ATPase, P-type; copper,	99.97
2kij_A	124	Copper-transporting ATPase 1; actuator, menkes dis	99.96
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	99.95
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	99.95
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	99.93
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	99.93
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	99.92
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	99.92
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	99.91
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	99.91
2jmz_A	186	Hypothetical protein MJ0781; unknown function; NMR	94.31
2lcj_A	185	PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi	93.43
1at0_A	145	17-hedgehog; developmental signaling molecule, cho	85.95
4e2u_A	168	PHO RADA intein; HINT-fold, unknown function; 1.58	81.58

>2hc8_A PACS, cation-transporting ATPase, P-type; copper, COPA, COPB, actuator, transport protein; 1.65A {Archaeoglobus fulgidus} PDB: 2voy_F

Probab=99.97  E-value=4.8e-32  Score=169.53  Aligned_cols=89  Identities=28%  Similarity=0.381  Sum_probs=85.9

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ++++|+|+|+++.+++++|+|||+|.+++|++|||||+++++. +.+|||+|||||.|+.|.++          +.+|+|
T Consensus        12 ~~a~v~r~g~~~~i~~~~l~~GDiv~v~~G~~iPaDg~v~~g~-~~vdeS~LTGEs~pv~k~~g----------~~v~aG   80 (113)
T 2hc8_A           12 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGE-SYVDESMISGEPVPVLKSKG----------DEVFGA   80 (113)
T ss_dssp             SEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECC-EEEECHHHHCCSSCEEECTT----------CEECTT
T ss_pred             CEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeeEEEEEce-EEEEccccCCCCccEEECCC----------CEEEeC
Confidence            4688999999999999999999999999999999999999999 59999999999999999999          899999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.+.++|+++|.+|+
T Consensus        81 t~~~~G~~~~~V~~~g~~T~  100 (113)
T 2hc8_A           81 TINNTGVLKIRATRVGGETL  100 (113)
T ss_dssp             CEECSSCEEEEEEECGGGSH
T ss_pred             CEEeeceEEEEEEEecCcCH
Confidence            99999999999999999985

>2kij_A Copper-transporting ATPase 1; actuator, menkes disease, alternative splicing, ATP-binding, cell membrane, cytoplasm, disease mutation; NMR {Homo sapiens}

Probab=99.96  E-value=2e-30  Score=164.44  Aligned_cols=89  Identities=25%  Similarity=0.302  Sum_probs=84.1

Q ss_pred             cEEEEEeCCe------EEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcc
Q psy2751           2 EFATVIRQGE------KLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETK   75 (102)
Q Consensus         2 ~~~~v~r~g~------~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~   75 (102)
                      ++++|+|+|+      ++.+++++|+|||+|.+++|++|||||+++++++ .+|||+|||||.|+.|.++          
T Consensus        18 ~~a~v~r~g~~~~~~~~~~v~~~~l~~GDiv~v~~G~~iPaDg~vi~g~~-~vdeS~LTGEs~pv~k~~g----------   86 (124)
T 2kij_A           18 TEATIVTLDSDNILLSEEQVDVELVQRGDIIKVVPGGKFPVDGRVIEGHS-MVDESLITGEAMPVAKKPG----------   86 (124)
T ss_dssp             SEEEEEECSSSTTCCEEEEEETTTCCTTCEEECCTTCBCSSCEEECSCCC-EEECTTTTCCSSCEECCTT----------
T ss_pred             CEEEEEECCCCCceeEEEEEeHHHCCCCCEEEECCCCEEEeeEEEEEccE-EEEeccccCCCccEEeCCC----------
Confidence            4688999764      6889999999999999999999999999999996 9999999999999999998          


Q ss_pred             cEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          76 NLGFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        76 ~~v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      +.+|+||.+.+|.+.++|+++|.+|+
T Consensus        87 ~~v~aGt~~~~G~~~~~v~~~g~~T~  112 (124)
T 2kij_A           87 STVIAGSINQNGSLLICATHVGADTT  112 (124)
T ss_dssp             EEECTTCEEESSCCEEEECSCTTTCH
T ss_pred             CEEEcCCEEeeeEEEEEEEEecccCH
Confidence            99999999999999999999999985

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=99.95  E-value=4.4e-28  Score=194.32  Aligned_cols=100  Identities=59%  Similarity=0.841  Sum_probs=94.8

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .+++|+|+|+++.|++++|+|||+|.+++||+|||||+|+++++|.||||+|||||.|+.|.+++...++++..|++|+|
T Consensus       172 ~~a~V~Rdg~~~~I~~~~Lv~GDiV~l~~Gd~IPaD~~ll~g~~~~VdeS~LTGES~pv~K~~~~~~~~~~~~~n~v~~G  251 (1028)
T 2zxe_A          172 QQALVIRDGEKSTINAEFVVAGDLVEVKGGDRIPADLRIISAHGCKVDNSSLTGESEPQTRSPEFSSENPLETRNIAFFS  251 (1028)
T ss_dssp             SEEEEEETTEEEEEEGGGCCTTCEEEEETTCBCCSEEEEEEEEEEEEECHHHHSCCSCEECCSSCCCSSTTTCSSEECTT
T ss_pred             CeeEEEECCEEEEEEHHHCCcCCEEEECCCCEeeceEEEEeeCcEEEEcCccCCCCcceecccCCCCCCcccccceEEeC
Confidence            46899999999999999999999999999999999999999987899999999999999999987666788899999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.+.++|++||.+|.
T Consensus       252 T~v~~G~~~~~V~~tG~~T~  271 (1028)
T 2zxe_A          252 TNCVEGTARGVVVYTGDRTV  271 (1028)
T ss_dssp             CEEEEEEEEEEEEECGGGSH
T ss_pred             ceEEcceEEEEEEEeccccH
Confidence            99999999999999999984

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=99.95  E-value=4.8e-28  Score=194.13  Aligned_cols=100  Identities=52%  Similarity=0.806  Sum_probs=94.8

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      .+++|+|+|+++.+++++|+|||+|.+++||+||||++|++++++.||||+|||||.|+.|.++.....++...|++|+|
T Consensus       177 ~~a~ViRdG~~~~I~~~eLv~GDiV~l~~Gd~VPAD~~ll~~~~l~VdES~LTGES~pv~K~~~~~~~~~~~~~n~~f~G  256 (1034)
T 3ixz_A          177 QQATVIRDGDKFQINADQLVVGDLVEMKGGDRVPADIRILQAQGRKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFS  256 (1034)
T ss_pred             CeeEEEECCEEEEEEHHHCCCCcEEEEcCCceecCCeEEEEeCCceEEecccCCCCCCeeccCCCccccccccccceecc
Confidence            46899999999999999999999999999999999999999988899999999999999999887667788889999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|++.++|++||.+|.
T Consensus       257 T~v~~G~~~~vVv~tG~~T~  276 (1034)
T 3ixz_A          257 TMCLEGTAQGLVVNTGDRTI  276 (1034)
T ss_pred             eeEEeecceEEEEeehhhhH
Confidence            99999999999999999985

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=99.93  E-value=1.3e-26  Score=184.15  Aligned_cols=89  Identities=35%  Similarity=0.470  Sum_probs=86.0

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCc-eEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRG-FKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~-~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      +++|+|+|+++.+++++|+|||+|.+++||+|||||+|+++++ +.||||+|||||.|+.|.++          |.+|+|
T Consensus       179 ~a~V~RdG~~~~I~~~eLv~GDiV~l~~Gd~VPaDg~ll~g~~~l~VDES~LTGES~PV~K~~g----------d~v~sG  248 (920)
T 1mhs_A          179 KAVVLRDGTLKEIEAPEVVPGDILQVEEGTIIPADGRIVTDDAFLQVDQSALTGESLAVDKHKG----------DQVFAS  248 (920)
T ss_dssp             SCEEECSSSEEECCTTTSCTTSEEEECTTCBCSSEEEEEEESSCCEEBCTTTSSCCCCEECCSS----------CEECSC
T ss_pred             EEEEEECCEEEEEEHHHcCCCCEEEeCCCCccccceEEEecCceeeeeccccCCCCcceEecCC----------CeeecC
Confidence            5789999999999999999999999999999999999999985 89999999999999999998          899999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.+.++|++||.+|+
T Consensus       249 T~v~~G~~~~~V~~tG~~T~  268 (920)
T 1mhs_A          249 SAVKRGEAFVVITATGDNTF  268 (920)
T ss_dssp             BCCSCCCEEEEEEECSTTCS
T ss_pred             ceEecceEEEEEEEeCCcCH
Confidence            99999999999999999996

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.93  E-value=6.8e-26  Score=174.79  Aligned_cols=89  Identities=28%  Similarity=0.393  Sum_probs=85.7

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ++++|+|+|+++.+++++|+|||+|.+++||+|||||++++|+. .+|||+|||||.|+.|.++          +.+|+|
T Consensus       133 ~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VdeS~LTGES~Pv~K~~g----------~~v~~G  201 (645)
T 3j08_A          133 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKG----------DEVFGA  201 (645)
T ss_dssp             SEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTT----------CEECTT
T ss_pred             CEEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEECcE-EEEcccccCCCCceecCCC----------CEeecc
Confidence            46889999999999999999999999999999999999999994 9999999999999999998          999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.+.++|+++|.+|.
T Consensus       202 t~~~~g~~~~~v~~~G~~T~  221 (645)
T 3j08_A          202 TINNTGVLKIRATRVGGETL  221 (645)
T ss_dssp             CEECSSCEEEEEEECGGGSH
T ss_pred             EEEecCcEEEEEEEcCCccH
Confidence            99999999999999999984

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=99.92  E-value=1.7e-25  Score=178.85  Aligned_cols=100  Identities=34%  Similarity=0.464  Sum_probs=88.3

Q ss_pred             cEEEEEeCCe--EEEEEccCCCCCCEEEEcCCCEeCCceEEEee--CceEEEccccCCCCccEEecccCCC---CCCCCc
Q psy2751           2 EFATVIRQGE--KLTVRAEDIVLGDVVDVKFGDRIPADIRIIEC--RGFKVDNSSLTGESEPQSRGVDFTN---DNPLET   74 (102)
Q Consensus         2 ~~~~v~r~g~--~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~--~~~~vd~s~ltGEs~pv~k~~~~~~---~~~~~~   74 (102)
                      ++++|+|+|+  ++.+++++|+|||+|.+++||+|||||+|+++  ..|.||||+|||||.|+.|.++...   ....+.
T Consensus       126 ~~a~V~R~g~~~~~~I~~~~lv~GDiV~l~~Gd~IPaD~~ll~~~s~~l~VdeS~LTGES~pv~K~~~~~~~~~~~~~~~  205 (995)
T 3ar4_A          126 EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK  205 (995)
T ss_dssp             SEEEEEBTTCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCEEEECHHHHCCCSCEEECCSCCCCTTCCGGGC
T ss_pred             CeEEEEeCCCceEEEEEHHHCCCCCEEEECCCCcccccEEEEEEeeceEEEEcccccCCCcceeccccccCCcccCcccc
Confidence            4688999887  69999999999999999999999999999754  4489999999999999999987421   234567


Q ss_pred             ccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          75 KNLGFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        75 ~~~v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      .|.+|+||.+.+|.+.++|++||++|.
T Consensus       206 ~~~v~~GT~v~~G~~~~~V~~tG~~T~  232 (995)
T 3ar4_A          206 KNMLFSGTNIAAGKALGIVATTGVSTE  232 (995)
T ss_dssp             TTEECTTCEEEECEEEEEEEECGGGSH
T ss_pred             cceEecCCEEEcceEEEEEEEcCcchH
Confidence            899999999999999999999999985

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=99.92  E-value=1.6e-25  Score=174.41  Aligned_cols=89  Identities=28%  Similarity=0.393  Sum_probs=85.6

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEee
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFS   81 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~G   81 (102)
                      ++++|+|+|+++.+++++|+|||+|.+++||+|||||++++|+. .+|||+|||||.|+.|.++          +.+|+|
T Consensus       211 ~~a~v~r~g~~~~i~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VdeS~LTGES~pv~K~~g----------~~v~~G  279 (723)
T 3j09_A          211 KTAVVIRDGKEIAVPVEEVAVGDIVIVRPGEKIPVDGVVVEGES-YVDESMISGEPVPVLKSKG----------DEVFGA  279 (723)
T ss_dssp             SEEEEEETTEEEEEEGGGCCTTCEEEECTTCBCCSEEEEEECCE-EEECHHHHCCSSCEEECTT----------CEECTT
T ss_pred             CeeEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeEEEEEECCe-EEecccccCCCcceeecCC----------Ceeccc
Confidence            46889999999999999999999999999999999999999995 9999999999999999998          999999


Q ss_pred             CEEeeeeEEEEEEEeCCCcc
Q psy2751          82 TNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        82 t~v~~g~~~~~V~~tG~~t~  101 (102)
                      |.+.+|.+.++|+++|.+|.
T Consensus       280 t~~~~g~~~~~v~~~g~~T~  299 (723)
T 3j09_A          280 TINNTGVLKIRATRVGGETL  299 (723)
T ss_dssp             CEECSSCEEEEEEECGGGSH
T ss_pred             eEEecCcEEEEEEEecCccH
Confidence            99999999999999999984

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=99.91  E-value=7.5e-25  Score=171.07  Aligned_cols=89  Identities=26%  Similarity=0.362  Sum_probs=84.4

Q ss_pred             cEEEEEe-CCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEe
Q psy2751           2 EFATVIR-QGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFF   80 (102)
Q Consensus         2 ~~~~v~r-~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~   80 (102)
                      ++++++| +|+++.+++++|+|||+|.+++||+|||||++++|+. .||||+|||||.|+.|.++          +.+|+
T Consensus       225 ~~a~vv~~dg~~~~v~~~~l~~GDiv~v~~Ge~IPaDg~vl~G~~-~VDES~LTGES~Pv~K~~g----------d~v~~  293 (736)
T 3rfu_A          225 ESAHRIKEDGSEEEVSLDNVAVGDLLRVRPGEKIPVDGEVQEGRS-FVDESMVTGEPIPVAKEAS----------AKVIG  293 (736)
T ss_dssp             CEEEEEETTEEEEEEETTTCCTTCEECCCSSEECCSCEEECSSCE-EEECSSSTTCSSCEEECTT----------CEECT
T ss_pred             CEEEEEecCCEEEEEEHhhCCCCCEEEECCCCcccccEEEEECce-EeeecccCCccccEEeccC----------CcCCC
Confidence            3567777 8999999999999999999999999999999999995 9999999999999999999          89999


Q ss_pred             eCEEeeeeEEEEEEEeCCCcc
Q psy2751          81 STNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        81 Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      ||.+.+|.+.++|+++|.+|+
T Consensus       294 Gt~~~~G~~~~~v~~~G~~T~  314 (736)
T 3rfu_A          294 ATINQTGSFVMKALHVGSDTM  314 (736)
T ss_dssp             TCEEESCCCCEEECCCSTTSH
T ss_pred             ceEeccceEEEEEEEechhhH
Confidence            999999999999999999984

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=99.91  E-value=3.1e-27  Score=187.27  Aligned_cols=89  Identities=34%  Similarity=0.474  Sum_probs=85.7

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeCCceEEEeeCceEEEccccCCCCccEEecccCCCCCCCCcccEEEeeC
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIPADIRIIECRGFKVDNSSLTGESEPQSRGVDFTNDNPLETKNLGFFST   82 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~~~~vd~s~ltGEs~pv~k~~~~~~~~~~~~~~~v~~Gt   82 (102)
                      +++|+|+|+++.+++++|+|||+|.+++||+|||||+|++|++|.||||+|||||.|+.|.++          |.+|+||
T Consensus       131 ~a~V~RdG~~~~I~~~~Lv~GDiV~l~~Gd~IPaDg~ll~g~~l~VdES~LTGES~Pv~K~~g----------~~v~~GT  200 (885)
T 3b8c_A          131 KTKVLRDGKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPG----------QEVFSGS  200 (885)
T ss_dssp             CCCCCCSSCSCCCCTTTTCTTSBCCCCSSCCCSSCCCCCCSSCBCCCCCSTTCCSSCCCBSSC----------CCCCSCC
T ss_pred             eEEEEECCEEEEEEHHHCCCCCEEEECCCCEEeeceEEEEcCcccccccccCCCCcceEecCC----------CccccCe
Confidence            567899999999999999999999999999999999999998778999999999999999998          8999999


Q ss_pred             EEeeeeEEEEEEEeCCCcc
Q psy2751          83 NAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        83 ~v~~g~~~~~V~~tG~~t~  101 (102)
                      .+.+|.+.++|++||.+|+
T Consensus       201 ~v~~G~~~~~V~~tG~~T~  219 (885)
T 3b8c_A          201 TCKQGEIEAVVIATGVHTF  219 (885)
T ss_dssp             CCCSCCCCCBCCSCTTTTT
T ss_pred             EEeeeEEEEEEEEcCcccH
Confidence            9999999999999999996

>2jmz_A Hypothetical protein MJ0781; unknown function; NMR {Methanocaldococcus jannaschii} PDB: 2jnq_A

Probab=94.31  E-value=0.06  Score=35.22  Aligned_cols=34  Identities=24%  Similarity=0.354  Sum_probs=27.9

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeC
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIP   35 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vP   35 (102)
                      ++.++.++|+..++++++|.+||.|.+..+..++
T Consensus       103 Hp~~v~~~g~~~w~~A~eLk~GD~v~~~~~~~~~  136 (186)
T 2jmz_A          103 HPVYISKTGEVLEINAEMVKVGDYIYIPKNNTIN  136 (186)
T ss_dssp             CEEEEEETTEEEEEEGGGCCTTSEEEEECSSSEE
T ss_pred             CEEEEeCCCeEEEEEhhcCCCCCEEEecccCCcc
Confidence            3567888899999999999999999997654444

>2lcj_A PAB POLC intein; hydrolase; NMR {Pyrococcus abyssi}

Probab=93.43  E-value=0.15  Score=33.22  Aligned_cols=34  Identities=24%  Similarity=0.156  Sum_probs=28.2

Q ss_pred             cEEEEEeCCeEEEEEccCCCCCCEEEEcCCCEeC
Q psy2751           2 EFATVIRQGEKLTVRAEDIVLGDVVDVKFGDRIP   35 (102)
Q Consensus         2 ~~~~v~r~g~~~~i~~~~l~~GDii~l~~g~~vP   35 (102)
                      ++.++.++|+..++.+++|.+||.|.+..++..|
T Consensus        93 H~~~v~~~g~~~~~~A~eLk~GD~v~v~~~~~~~  126 (185)
T 2lcj_A           93 HPVLVYENGRFIEKRAFEVKEGDKVLVSELELVE  126 (185)
T ss_dssp             SEEEEEETTEEEEEEGGGCCTTCEEEECCCCCSC
T ss_pred             CEEEEecCCeEEEEEHHHCCCCCEEEEccccccc
Confidence            4567788899999999999999999998766443

>1at0_A 17-hedgehog; developmental signaling molecule, cholesterol transfer, signaling protein; 1.90A {Drosophila melanogaster} SCOP: b.86.1.1

Probab=85.95  E-value=1.7  Score=27.18  Aligned_cols=29  Identities=21%  Similarity=0.033  Sum_probs=23.0

Q ss_pred             EEEEEeC--CeEEEEEccCCCCCCEEEEcCC
Q psy2751           3 FATVIRQ--GEKLTVRAEDIVLGDVVDVKFG   31 (102)
Q Consensus         3 ~~~v~r~--g~~~~i~~~~l~~GDii~l~~g   31 (102)
                      .+++...  ++..++.+++|++||.|.+..|
T Consensus        73 ~i~v~~~~~~~~~~v~A~~l~~GD~v~~~~~  103 (145)
T 1at0_A           73 LVSVWQPESQKLTFVFADRIEEKNQVLVRDV  103 (145)
T ss_dssp             EEEEEETTTTEEEEEEGGGCCTTCEEEEECT
T ss_pred             EEEEecCCCCcEEEEEHHHCcCCCEEEEecC
Confidence            4455554  4578899999999999999876

>4e2u_A PHO RADA intein; HINT-fold, unknown function; 1.58A {Pyrococcus horikoshii} PDB: 2lqm_A 4e2t_A*

Probab=81.58  E-value=1.7  Score=27.69  Aligned_cols=28  Identities=29%  Similarity=0.195  Sum_probs=21.8

Q ss_pred             EEEEEeCCeEEEEEccCCCCCCEEEEcCC
Q psy2751           3 FATVIRQGEKLTVRAEDIVLGDVVDVKFG   31 (102)
Q Consensus         3 ~~~v~r~g~~~~i~~~~l~~GDii~l~~g   31 (102)
                      +.++.++++ .++.+++|.+||.|.+..|
T Consensus        98 p~~~~~~~~-~w~~a~~L~~Gd~l~~~~g  125 (168)
T 4e2u_A           98 PVLLFRDGL-QWVPAAEVKPGDVVVGVRN  125 (168)
T ss_dssp             EEEEESSSE-EEEEGGGCCTTCEEEEEET
T ss_pred             cEEEEcCCC-EEEEHHHCCCCCEEEeccC
Confidence            445555554 7789999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	102
d1wpga1	115	b.82.7.1 (A:125-239) Calcium ATPase, transduction	1e-12

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 115

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 57.0 bits (137), Expect = 1e-12
 Identities = 36/95 (37%), Positives = 49/95 (51%), Gaps = 7/95 (7%)

Query: 2  EFATVIRQGEKLT--VRAEDIVLGDVVDVKFGDRIPADIRIIECR--GFKVDNSSLTGES 57
          E   V R   K    ++A DIV GD+V+V  GD++PADIRI+  +    +VD S LTGES
Sbjct: 1  EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGES 60

Query: 58 EPQSRGVDFTND---NPLETKNLGFFSTNAVEGNA 89
              +  +   D      + KN+ F  TN   G A
Sbjct: 61 VSVIKHTEPVPDPRAVNQDKKNMLFSGTNIAAGKA 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	102
d1wpga1	115	Calcium ATPase, transduction domain A {Rabbit (Ory	99.98
d1dq3a1	168	PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxI	85.93
d1at0a_	145	Hedgehog {Fruit fly (Drosophila melanogaster) [Tax	84.8
d1dgsa2	86	NAD+-dependent DNA ligase {Thermus filiformis [Tax	82.17

>d1wpga1 b.82.7.1 (A:125-239) Calcium ATPase, transduction domain A {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Calcium ATPase, transduction domain A
family: Calcium ATPase, transduction domain A
domain: Calcium ATPase, transduction domain A
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.98  E-value=1.3e-32  Score=171.08  Aligned_cols=100  Identities=36%  Similarity=0.507  Sum_probs=87.5

Q ss_pred             cEEEEEeCCeE--EEEEccCCCCCCEEEEcCCCEeCCceEEEeeC--ceEEEccccCCCCccEEecccCCCC---CCCCc
Q psy2751           2 EFATVIRQGEK--LTVRAEDIVLGDVVDVKFGDRIPADIRIIECR--GFKVDNSSLTGESEPQSRGVDFTND---NPLET   74 (102)
Q Consensus         2 ~~~~v~r~g~~--~~i~~~~l~~GDii~l~~g~~vPaD~~ll~~~--~~~vd~s~ltGEs~pv~k~~~~~~~---~~~~~   74 (102)
                      +.++|+|+|++  ++|++++|+|||+|.+++|+++||||+|++++  .+.+|||+||||+.|+.|.+.....   .....
T Consensus         1 e~~kV~R~g~~~v~~I~~~eLv~GDiv~l~~G~~vPaD~~ll~~~~~~l~vdes~lTGEs~pv~K~~~~~~~~~~~~~~~   80 (115)
T d1wpga1           1 EMGKVYRADRKSVQRIKARDIVPGDIVEVAVGDKVPADIRILSIKSTTLRVDQSILTGESVSVIKHTEPVPDPRAVNQDK   80 (115)
T ss_dssp             SEEEEEBSSCSSCEEEEGGGCCTTCEEEEETTCBCCSEEEEEEECSSCCEEECHHHHSCCSCEECCCSCCCCTTCCGGGC
T ss_pred             CceEEEECCCceEEEEeHHHCCCCCEEEECCCCEEeeceEEEEeeccceEEEEeecccceEEEEeecccccccccccccc
Confidence            35789999975  78999999999999999999999999998744  3799999999999999998764322   23356


Q ss_pred             ccEEEeeCEEeeeeEEEEEEEeCCCcc
Q psy2751          75 KNLGFFSTNAVEGNAFSSFVLLLANNF  101 (102)
Q Consensus        75 ~~~v~~Gt~v~~g~~~~~V~~tG~~t~  101 (102)
                      .|++|+||.+.+|+++++|++||.+|+
T Consensus        81 ~n~lf~GT~V~~G~~~~~V~~tG~~T~  107 (115)
T d1wpga1          81 KNMLFSGTNIAAGKALGIVATTGVSTE  107 (115)
T ss_dssp             TTEECTTCEEEECEEEEEEEECGGGSH
T ss_pred             cceEEeccEEEeeeEEEEEEEEccccH
Confidence            899999999999999999999999986

>d1dq3a1 b.86.1.2 (A:1-128,A:415-454) PI-Pfui intein {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: Hedgehog/intein (Hint) domain
superfamily: Hedgehog/intein (Hint) domain
family: Intein (protein splicing domain)
domain: PI-Pfui intein
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.93  E-value=0.51  Score=28.79  Aligned_cols=32  Identities=19%  Similarity=0.172  Sum_probs=24.2

Q ss_pred             cEEEEEe-CCeEEEEEccCCCCCCEEEEcCCCE
Q psy2751           2 EFATVIR-QGEKLTVRAEDIVLGDVVDVKFGDR   33 (102)
Q Consensus         2 ~~~~v~r-~g~~~~i~~~~l~~GDii~l~~g~~   33 (102)
                      ++.++.+ +++++++++++|.+||.+....+..
T Consensus        99 Hp~~v~~~~~~~~~~~a~~L~~GD~l~~~~~~~  131 (168)
T d1dq3a1          99 HPFFVLTPDFKIVEKRADELKEGDILIGGMGLE  131 (168)
T ss_dssp             CEEEEECTTSCEEEEETTTCCTTCEECBCCHCE
T ss_pred             ceEEEecCCCeEEEEEcccCCCCCEEEecCcce
Confidence            3566776 4688999999999999887554443

>d1at0a_ b.86.1.1 (A:) Hedgehog {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: Hedgehog/intein (Hint) domain
superfamily: Hedgehog/intein (Hint) domain
family: Hedgehog C-terminal (Hog) autoprocessing domain
domain: Hedgehog
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=84.80  E-value=1  Score=26.01  Aligned_cols=30  Identities=20%  Similarity=0.067  Sum_probs=23.0

Q ss_pred             EEEEEe--CCeEEEEEccCCCCCCEEEEcCCC
Q psy2751           3 FATVIR--QGEKLTVRAEDIVLGDVVDVKFGD   32 (102)
Q Consensus         3 ~~~v~r--~g~~~~i~~~~l~~GDii~l~~g~   32 (102)
                      ..++.+  ++..+.+.+++|.+||.+.+..++
T Consensus        73 ~~~v~~~~~~~~~~v~a~~l~~GD~l~~~~~~  104 (145)
T d1at0a_          73 LVSVWQPESQKLTFVFADRIEEKNQVLVRDVE  104 (145)
T ss_dssp             EEEEEETTTTEEEEEEGGGCCTTCEEEEECTT
T ss_pred             eEEEEcCCCCceeEEEeeeecCCCEEEEEcCC
Confidence            445554  357788999999999999987654

>d1dgsa2 b.40.4.6 (A:315-400) NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: DNA ligase/mRNA capping enzyme postcatalytic domain
domain: NAD+-dependent DNA ligase
species: Thermus filiformis [TaxId: 276]

Probab=82.17  E-value=0.21  Score=27.64  Aligned_cols=20  Identities=50%  Similarity=0.597  Sum_probs=17.5

Q ss_pred             EccCCCCCCEEEE-cCCCEeC
Q psy2751          16 RAEDIVLGDVVDV-KFGDRIP   35 (102)
Q Consensus        16 ~~~~l~~GDii~l-~~g~~vP   35 (102)
                      .-.+|.+||.|.+ ++||.||
T Consensus        49 ~~~~i~~Gd~V~i~raGdVIP   69 (86)
T d1dgsa2          49 EELDIRIGDWVLVHKAGGVIP   69 (86)
T ss_dssp             HHTTCBSSCEEEEEEETTTEE
T ss_pred             hhcCCCcCceEEEEECCCCcc
Confidence            3568999999999 6999999