Psyllid ID: psy2772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740------
Protein Sequence
SELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAGKSAQGSTSPSGRSTAAETGTERTGQTADGEIQLFESADQARTHWSSGPGSTGVAGKSAQGSTSPSGRSTAAETGTERTGQTADGEIQLFESADQARTHWSNPGLMCILSSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNLTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPTGVAGKVSKSGLDPTGVAVDTRIPNPCSLSLGLYPWDDTEDSSDGAGPVGAKRKTSHGWLETDLDMNSTLDVAIESPCISYPSSPQHMTSSPLPSSPTSTSIPLYVNTDSGTDVKLNGKTGRFGNTETNGTSAEIGRAEATSSGA
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccEEEEEEcccEEEEEEEEEEEcccccccccHHHcccEEccccccccEEEEccccccccccccccccccccHHHHHHHHHHccccccccccccccccccHHccccHHHHHHccHHHHHHHHHHHcccccccccccccccccccccccccccccEEEEccccccccHHHHHHHHHccccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEHHHHHHcHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHcccccccccccccEEEEEccHcHccccccccccccccccccccccccccccccHHccccccccccccccEEEEccHHHHcHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccEcccccEEEEEEcccccccccccccccccccccHHHHHHHHccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHccccEcccccccccccccHHHccccEEEEEccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHcHHHHEEEEEcccccEHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccEEEccccccccEEEEccccccccEEccccccccccccccccccccccEcccccccEccccccccccEEEEcccccccccccccccccccccccccccEEEEEccccccEEEcccccccccccccccccEEcccEcccccc
Coil and Loop (DISEMBL)
SELVVLRQKLQwsrrevcngtaslsngpsVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNslsqqirpgptgvagksaqgstspsgrstaaetgtertgqtadgeIQLFESAdqarthwssgpgstgvagksaqgstspsgrstaaetgtertgqtadgeIQLFESAdqarthwsnpglmCILSSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNlternekiplkfvndgDYIQAVLDRNLAENisrvlypndnnfggkelRLKQEYFMCAATLQVIslpfkdqgrallgyshssgrevSKSVVRhtkhmpspaivattgsgpflgypksdniilprkqhlFLDSVIWYISLLEVYrlggplacgpwkvhaelpirvrpvspirIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLrhkmhgvhaspaEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWsrrevcngtaslsngpsVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNslsqqirpgptgvavagksvnrpgptgvagkvsksgldptgvavdtripnpcslslglypwddtedssdgagpvgakrktshgwletdldmnstldvaiespcisypsspqhmtssplpssptstsiplyvntdsgtdvklngktgrfgntetngtsaeigraeatssga
Flexible Loop (DISEMBL)
selvvlrqklqwsrrevcngtaslsngpSVAALEAELRRVQALVGDLQRQRQELSAQVKQLteksnslsqqirpgptgvagksaqgstspsgrstaaetgtertgqtadGEIQLFESADQARTHWSsgpgstgvagksaqgstspsgrstaaetgtertgqtadGEIQLFESADQARTHWSNPGLMCILSSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVsitfnlternekiplkfvndGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGRALLGYSHSSGREVSKSVVrhtkhmpspaiVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHaelpirvrpvspIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKmhgvhaspaeveRYRRQQRLLERELSRvrsilahnskklEETVAANARLESELVVLRQKLQWSRRevcngtaslsngpSVAALEAELRRVQALVGDLQRQRQELSAQVKQLteksnslsqqirpgPTGVAVAGKSVNRPGPtgvagkvsksgldPTGVAVDTRIPNPCSLSLGLYPWDDTEDSSDGAGPVGAKRKTSHGWLETDLDMNSTLDVAIESPCISYPSSPQHMTSSPLPSSPTSTSIPLYvntdsgtdvklngktgrfgntetngtsaeigraeatssga
Low Complexity Region (SEG)
SELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAGKSAQGSTSPSGRSTAAETGTERTGQTADGEIQLFESADQARTHWSSGPGSTGVAGKSAQGSTSPSGRSTAAETGTERTGQTADGEIQLFESADQARTHWSNPGLMCILSSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNLTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELpirvrpvspiririgvMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAeveryrrqqrllerelsrvrsILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPTGVAGKVSKSGLDPTGVAVDTRIPNPCSLSLGLYPWDDTEDSSDGAGPVGAKRKTSHGWLETDLDMNSTLDVAIESPCISYPSSPQHMtssplpssptstsIPLYVNTDSGTDVKLNGKTGRFGNTETNGTSAEIGRAEATSSGA
Disordered region (IsUnstruct)
****VLRQKLQWSRREVCN************************************************************************************************************************************************************ARTHWSNPGLMCILSSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNLTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGRALLGY***********************IVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSV************************************************************VAANARLESELVVLRQKLQWSRREVCNGTA**********L***LRRVQAL****************************************************************VAVDTRIPNPCSLSLGLYPW**********************WLETDLDMNSTLDVAIE**********************************************************************
Disordered Region (DISOPRED)
*ELVVLRQKL********************AALEAELRRVQALVGD*****************************************************GTERTGQ*****************************************************************************GLMCILSSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNLTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSV*******L**ALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPG*********************KVSKSGLDPTG**************************************************************************************PLYVNTDSGTDVKLNGK**************************
Disordered Region (DISEMBL)
SELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQ*********************************************************QTADGEIQLFESADQ****************************************QTADGEIQLFESADQARTHWSNPGLMCILSSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNLTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGRALLGYSHS***********HTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQ****************************TGVAVAGKSVNRPGPTGVAGKVSKSGLDPTGVAVDTRIPNPCSLSLGLYPWDDT***************TSHGWLETDLDMNSTLDVAIESPCISYP*****************TSIPLYVNTDSGTDVKLNGKTGRFGNTETNGTSA************
Disordered Region (DISPRO)
*ELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQ************************************************DGE****ES***********************************************GEIQLFESADQARTHWSNPGLMCILSSYVYYCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVELEKQVSITFNLTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGR***********EVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPTGVAGKVSKSGLDPTGVAVDTRIPNPCSLSLGLYPWDDT******************GWLETDLDMNSTLDVAIESPCISYP*****************TSIPLYVNTDSGTDVKLNGKT*RF**********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SELVVLRQKLQWSRREVCNGTASLSNGPSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRPGPTGVAGKSAQGSTSPSGRSTAAETGTERTGQTADGEIQLFESADQARTHWSSGPGSTGVAGKSAQGSTSPSGRSTAAETGTERTGQTADGEIQLFESADQARTHWSNPGLMCILSSYVYYCVLSAYIRYVSARLADLETPKxxxxxxxxxxxxxxxxxxxxxxxxxxxxTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAExxxxxxxxxxxxxxxxxxxxxLAHNSKKxxxxxxxxxxxxxxxxxxxxxxxxxxxxVCNGTASLSNGPSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIRPGPTGVAVAGKSVNRPGPTGVAGKVSKSGLDPTGVAVDTRIPNPCSLSLGLYPWDDTEDSSDGAGPVGAKRKTSHGWLETDLDMNSTLDVAIESPCISYPSSPQHMTSSPLPSSPTSTSIPLYVNTDSGTDVKLNGKTGRFGNTETNGTSAEIGRAEATSSGA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	746	2.2.26 [Sep-21-2011]
Q9XTL9	844	Glycogen phosphorylase OS	no	N/A	0.140	0.124	0.529	6e-24
P06737	847	Glycogen phosphorylase, l	yes	N/A	0.079	0.069	0.796	3e-18
Q8CI94	843	Glycogen phosphorylase, b	yes	N/A	0.079	0.069	0.796	3e-18
P53534	838	Glycogen phosphorylase, b	yes	N/A	0.079	0.070	0.796	4e-18
Q0VCM4	851	Glycogen phosphorylase, l	yes	N/A	0.079	0.069	0.779	4e-18
Q5MIB5	851	Glycogen phosphorylase, l	N/A	N/A	0.079	0.069	0.779	4e-18
Q9ET01	850	Glycogen phosphorylase, l	no	N/A	0.079	0.069	0.779	5e-18
P09811	850	Glycogen phosphorylase, l	no	N/A	0.079	0.069	0.779	5e-18
P11216	843	Glycogen phosphorylase, b	no	N/A	0.079	0.069	0.779	1e-17
Q5R5M6	843	Glycogen phosphorylase, b	no	N/A	0.079	0.069	0.779	1e-17

>sp|Q9XTL9|PYG_DROME Glycogen phosphorylase OS=Drosophila melanogaster GN=GlyP PE=2 SV=2

 Score =  113 bits (283), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 63/119 (52%), Positives = 75/119 (63%), Gaps = 14/119 (11%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
           LKF NDGDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYFMCAATLQ I   +K 
Sbjct: 255 LKFFNDGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFMCAATLQDIIRRYK- 313

Query: 313 QGRALLGYSHSSGREVSKSVVRHT-KHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHL 370
                      + +  S+  VR+T  H P    +    + P L  P+   I++  ++HL
Sbjct: 314 -----------ASKFGSREAVRNTFDHFPDKVAIQLNDTHPSLAIPELMRILVD-EEHL 360

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 1

>sp|P06737|PYGL_HUMAN Glycogen phosphorylase, liver form OS=Homo sapiens GN=PYGL PE=1 SV=4

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q8CI94|PYGB_MOUSE Glycogen phosphorylase, brain form OS=Mus musculus GN=Pygb PE=1 SV=3

 Score = 94.4 bits (233), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N GDYI+AVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LKDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P53534|PYGB_RAT Glycogen phosphorylase, brain form (Fragment) OS=Rattus norvegicus GN=Pygb PE=1 SV=3

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N GDYI+AVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LKDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q0VCM4|PYGL_BOVIN Glycogen phosphorylase, liver form OS=Bos taurus GN=PYGL PE=2 SV=1

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ +   FK
Sbjct: 255 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDVIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q5MIB5|PYGL_SHEEP Glycogen phosphorylase, liver form OS=Ovis aries GN=PYGL PE=2 SV=3

 Score = 94.0 bits (232), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ +   FK
Sbjct: 255 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDVIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Ovis aries (taxid: 9940)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q9ET01|PYGL_MOUSE Glycogen phosphorylase, liver form OS=Mus musculus GN=Pygl PE=1 SV=4

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ +   FK
Sbjct: 255 LQDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDVIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P09811|PYGL_RAT Glycogen phosphorylase, liver form OS=Rattus norvegicus GN=Pygl PE=1 SV=5

 Score = 93.6 bits (231), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ +   FK
Sbjct: 255 LQDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDVIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|P11216|PYGB_HUMAN Glycogen phosphorylase, brain form OS=Homo sapiens GN=PYGB PE=1 SV=5

 Score = 92.8 bits (229), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYI+AVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LQDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

>sp|Q5R5M6|PYGB_PONAB Glycogen phosphorylase, brain form OS=Pongo abelii GN=PYGB PE=2 SV=3

 Score = 92.4 bits (228), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYI+AVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LQDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

Phosphorylase is an important allosteric enzyme in carbohydrate metabolism. Enzymes from different sources differ in their regulatory mechanisms and in their natural substrates. However, all known phosphorylases share catalytic and structural properties.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	746
242011731	1008	conserved hypothetical protein [Pediculu	0.273	0.202	0.483	7e-51
328719140	1876	PREDICTED: hypothetical protein LOC10015	0.178	0.070	0.753	1e-46
328719138	1955	PREDICTED: hypothetical protein LOC10015	0.178	0.068	0.753	1e-46
328719136	1931	PREDICTED: hypothetical protein LOC10015	0.178	0.068	0.753	1e-46
328719134	1950	PREDICTED: hypothetical protein LOC10015	0.178	0.068	0.753	1e-46
328719132	1925	PREDICTED: hypothetical protein LOC10015	0.178	0.069	0.753	2e-46
345492007	1204	PREDICTED: hypothetical protein LOC10011	0.226	0.140	0.627	7e-45
307206702	1490	Dihydrolipoyllysine-residue acetyltransf	0.184	0.092	0.721	5e-44
383855508	1176	PREDICTED: uncharacterized protein LOC10	0.186	0.118	0.703	3e-43
340729380	2148	PREDICTED: hypothetical protein LOC10064	0.186	0.064	0.703	3e-43

>gi|242011731|ref|XP_002426600.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212510749|gb|EEB13862.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 132/273 (48%), Positives = 162/273 (59%), Gaps = 69/273 (25%)

Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
           Q KE+LE ALG LRHK+    ++P EV+RYR+QQ+L+E+ELSRVR +LAHNSKKLEETVA
Sbjct: 214 QDKELLEKALGGLRHKLQVNRSNPVEVDRYRKQQKLIEKELSRVRLLLAHNSKKLEETVA 273

Query: 505 ANARLESELVVLRQKLQWSRREVCNG------TASLSNGPSVAALEAELRRVQALVGDLQ 558
            NARLE ELV+LRQKLQ SR    N       +A+LS   + AALEAELRRVQ LVGDLQ
Sbjct: 274 ENARLEQELVILRQKLQASRVNSRNSVPLLPESATLS---TTAALEAELRRVQQLVGDLQ 330

Query: 559 RQRQELSAQVKQLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPTGVAGKVSKSGLDPTGV 618
           RQR ELSAQVKQLTEK+++L QQIRPGPTGVA AG     P P                 
Sbjct: 331 RQRHELSAQVKQLTEKNDTLVQQIRPGPTGVAGAG-----PIP----------------- 368

Query: 619 AVDTRIPNPCSLSLGLYPWDDTEDSSDGAGPVGAKRKTSHGWLETDLDMNSTLDVAIESP 678
                                           G K+ +S  WLETDLD+  T DV +E+ 
Sbjct: 369 --------------------------------GKKK-SSATWLETDLDLLITQDVGVENQ 395

Query: 679 CISYPSSPQHMTSSPLPSSPTSTSIPLYVNTDS 711
             +  S  Q     P  S+ + ++ P+Y+NT+S
Sbjct: 396 VTNRQSRQQ-----PANSASSRSTTPMYINTES 423

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719140|ref|XP_003246674.1| PREDICTED: hypothetical protein LOC100159827 isoform 5 [Acyrthosiphon pisum]

 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 116/138 (84%), Gaps = 5/138 (3%)

Query: 445  QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
            Q KE+LE ALG LRHKM G+H SPAE ERYRRQQ +LERELS VRS+LA+NSKKLEETVA
Sbjct: 1408 QDKELLEKALGGLRHKMQGIH-SPAEEERYRRQQHVLERELSSVRSVLANNSKKLEETVA 1466

Query: 505  ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
            +NARLESELVVLRQKLQ SRR    G      GP+VAALEAELRRVQ LVGDLQRQR++L
Sbjct: 1467 SNARLESELVVLRQKLQSSRRVPDTGAG----GPTVAALEAELRRVQLLVGDLQRQREDL 1522

Query: 565  SAQVKQLTEKSNSLSQQI 582
            S QV+QLTEKSN+LS Q+
Sbjct: 1523 SVQVRQLTEKSNTLSMQM 1540

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719138|ref|XP_001942884.2| PREDICTED: hypothetical protein LOC100159827 isoform 1 [Acyrthosiphon pisum]

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 116/138 (84%), Gaps = 5/138 (3%)

Query: 445  QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
            Q KE+LE ALG LRHKM G+H SPAE ERYRRQQ +LERELS VRS+LA+NSKKLEETVA
Sbjct: 1457 QDKELLEKALGGLRHKMQGIH-SPAEEERYRRQQHVLERELSSVRSVLANNSKKLEETVA 1515

Query: 505  ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
            +NARLESELVVLRQKLQ SRR    G      GP+VAALEAELRRVQ LVGDLQRQR++L
Sbjct: 1516 SNARLESELVVLRQKLQSSRRVPDTGAG----GPTVAALEAELRRVQLLVGDLQRQREDL 1571

Query: 565  SAQVKQLTEKSNSLSQQI 582
            S QV+QLTEKSN+LS Q+
Sbjct: 1572 SVQVRQLTEKSNTLSMQM 1589

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719136|ref|XP_003246673.1| PREDICTED: hypothetical protein LOC100159827 isoform 4 [Acyrthosiphon pisum]

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 116/138 (84%), Gaps = 5/138 (3%)

Query: 445  QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
            Q KE+LE ALG LRHKM G+H SPAE ERYRRQQ +LERELS VRS+LA+NSKKLEETVA
Sbjct: 1457 QDKELLEKALGGLRHKMQGIH-SPAEEERYRRQQHVLERELSSVRSVLANNSKKLEETVA 1515

Query: 505  ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
            +NARLESELVVLRQKLQ SRR    G      GP+VAALEAELRRVQ LVGDLQRQR++L
Sbjct: 1516 SNARLESELVVLRQKLQSSRRVPDTGAG----GPTVAALEAELRRVQLLVGDLQRQREDL 1571

Query: 565  SAQVKQLTEKSNSLSQQI 582
            S QV+QLTEKSN+LS Q+
Sbjct: 1572 SVQVRQLTEKSNTLSMQM 1589

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719134|ref|XP_003246672.1| PREDICTED: hypothetical protein LOC100159827 isoform 3 [Acyrthosiphon pisum]

 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 116/138 (84%), Gaps = 5/138 (3%)

Query: 445  QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
            Q KE+LE ALG LRHKM G+H SPAE ERYRRQQ +LERELS VRS+LA+NSKKLEETVA
Sbjct: 1482 QDKELLEKALGGLRHKMQGIH-SPAEEERYRRQQHVLERELSSVRSVLANNSKKLEETVA 1540

Query: 505  ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
            +NARLESELVVLRQKLQ SRR    G      GP+VAALEAELRRVQ LVGDLQRQR++L
Sbjct: 1541 SNARLESELVVLRQKLQSSRRVPDTGAG----GPTVAALEAELRRVQLLVGDLQRQREDL 1596

Query: 565  SAQVKQLTEKSNSLSQQI 582
            S QV+QLTEKSN+LS Q+
Sbjct: 1597 SVQVRQLTEKSNTLSMQM 1614

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719132|ref|XP_003246671.1| PREDICTED: hypothetical protein LOC100159827 isoform 2 [Acyrthosiphon pisum]

 Score =  194 bits (493), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 104/138 (75%), Positives = 116/138 (84%), Gaps = 5/138 (3%)

Query: 445  QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
            Q KE+LE ALG LRHKM G+H SPAE ERYRRQQ +LERELS VRS+LA+NSKKLEETVA
Sbjct: 1457 QDKELLEKALGGLRHKMQGIH-SPAEEERYRRQQHVLERELSSVRSVLANNSKKLEETVA 1515

Query: 505  ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
            +NARLESELVVLRQKLQ SRR    G      GP+VAALEAELRRVQ LVGDLQRQR++L
Sbjct: 1516 SNARLESELVVLRQKLQSSRRVPDTGAG----GPTVAALEAELRRVQLLVGDLQRQREDL 1571

Query: 565  SAQVKQLTEKSNSLSQQI 582
            S QV+QLTEKSN+LS Q+
Sbjct: 1572 SVQVRQLTEKSNTLSMQM 1589

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492007|ref|XP_001601711.2| PREDICTED: hypothetical protein LOC100117488 [Nasonia vitripennis]

 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 111/177 (62%), Positives = 123/177 (69%), Gaps = 8/177 (4%)

Query: 445 QAKEMLENALGSLRHKMHGV-HASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETV 503
           Q KE+LE ALG LRHKM G   ++PAE ERYR QQ LLERELSRVR +LAHNSKKLEETV
Sbjct: 372 QNKELLEKALGGLRHKMQGCSRSNPAEAERYREQQMLLERELSRVRLLLAHNSKKLEETV 431

Query: 504 AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQE 563
           A NARLE +LVVLRQKLQ SRR   N     S G + AALE ELRRVQ LVGDLQRQRQE
Sbjct: 432 AENARLEQDLVVLRQKLQASRRYAGNVQTRDSTG-TTAALEKELRRVQQLVGDLQRQRQE 490

Query: 564 LSAQVKQLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPTG------VAGKVSKSGLD 614
           LS QV+QLTEKS+SL QQIRP  T      +S  +  P         +G   + GLD
Sbjct: 491 LSIQVRQLTEKSHSLVQQIRPQATSTPQVHQSTKKRTPNSWLETDLDSGVTQEHGLD 547

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206702|gb|EFN84657.1| Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex, mitochondrial [Harpegnathos saltator]

 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 101/140 (72%), Positives = 113/140 (80%), Gaps = 2/140 (1%)

Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
           Q KE+LE ALG LRHK+ G  ++ AE ERYR+QQ LLERELSRVR +LAHNSKKLEETVA
Sbjct: 148 QDKEILEKALGGLRHKLQGSRSNLAEAERYRKQQLLLERELSRVRVLLAHNSKKLEETVA 207

Query: 505 ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL 564
            NARLE +LVVLRQKLQ SRR   N T   S+  + A LEAELRRVQ LVGDLQRQR+EL
Sbjct: 208 ENARLEQDLVVLRQKLQASRRYAGNITRDTSS--TTAPLEAELRRVQQLVGDLQRQRKEL 265

Query: 565 SAQVKQLTEKSNSLSQQIRP 584
           S QV+QLTEKS+SL QQIRP
Sbjct: 266 SIQVRQLTEKSHSLVQQIRP 285

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855508|ref|XP_003703252.1| PREDICTED: uncharacterized protein LOC100876690 [Megachile rotundata]

 Score =  183 bits (465), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 114/145 (78%), Gaps = 6/145 (4%)

Query: 445 QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
           Q KE+LE ALG LRHK+ G  ++ AE ERYR+QQ LLERELSRVR +LAHNSKKLEETVA
Sbjct: 371 QDKEILEKALGGLRHKLQGSRSNLAEAERYRKQQLLLERELSRVRVLLAHNSKKLEETVA 430

Query: 505 ANARLESELVVLRQKLQWSRREVCNGT--ASLSNGPSVAALEAELRRVQALVGDLQRQRQ 562
            NARLE +LVVLRQKLQ SRR   N T   S + GP    LE ELRRVQ LVGDLQRQR+
Sbjct: 431 ENARLEQDLVVLRQKLQASRRYAGNMTRDTSATTGP----LEVELRRVQQLVGDLQRQRK 486

Query: 563 ELSAQVKQLTEKSNSLSQQIRPGPT 587
           ELS QV+QLTEKS+SL QQIRP P+
Sbjct: 487 ELSVQVRQLTEKSHSLVQQIRPQPS 511

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729380|ref|XP_003402982.1| PREDICTED: hypothetical protein LOC100645228 [Bombus terrestris]

 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 114/145 (78%), Gaps = 6/145 (4%)

Query: 445  QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
            Q KE+LE ALG LRHK+ G  ++  E ERYR+QQ LLE+ELSRVR +LAHNSKKLEETVA
Sbjct: 1379 QDKEILEKALGGLRHKLQGSRSNLVEAERYRKQQLLLEKELSRVRVLLAHNSKKLEETVA 1438

Query: 505  ANARLESELVVLRQKLQWSRREVCNGT--ASLSNGPSVAALEAELRRVQALVGDLQRQRQ 562
             NARLE +LVVLRQKLQ SRR   N T   S + GP    LEAELRRVQ LVGDLQRQR+
Sbjct: 1439 ENARLEQDLVVLRQKLQASRRYAGNMTRDTSATTGP----LEAELRRVQQLVGDLQRQRK 1494

Query: 563  ELSAQVKQLTEKSNSLSQQIRPGPT 587
            ELS QV+QLTEKS+SL QQIRP PT
Sbjct: 1495 ELSIQVRQLTEKSHSLVQQIRPQPT 1519

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	746
FB|FBgn0085412	3022	CG34383 [Drosophila melanogast	0.207	0.051	0.456	4.2e-23
FB|FBgn0004507	844	GlyP "Glycogen phosphorylase"	0.154	0.136	0.5	1.8e-19
UNIPROTKB|E9PMM6	306	PYGL "Glycogen phosphorylase,	0.079	0.192	0.796	3e-16
WB|WBGene00020696	882	T22F3.3 [Caenorhabditis elegan	0.079	0.066	0.762	2.6e-15
UNIPROTKB|F1SFF8	854	PYGL "Phosphorylase" [Sus scro	0.093	0.081	0.684	1.4e-14
ZFIN|ZDB-GENE-041205-1	967	pygl "phosphorylase, glycogen;	0.089	0.069	0.716	1.7e-14
UNIPROTKB|F1NAD9	856	PYGL "Phosphorylase" [Gallus g	0.136	0.119	0.522	1.9e-14
UNIPROTKB|E9PK47	819	PYGL "Phosphorylase" [Homo sap	0.079	0.072	0.796	2.2e-14
RGD|3460	838	Pygb "phosphorylase, glycogen;	0.079	0.070	0.796	2.3e-14
UNIPROTKB|P53534	838	Pygb "Glycogen phosphorylase,	0.079	0.070	0.796	2.3e-14

FB|FBgn0085412 CG34383 [Drosophila melanogaster (taxid:7227)]

 Score = 286 (105.7 bits), Expect = 4.2e-23, Sum P(3) = 4.2e-23
 Identities = 73/160 (45%), Positives = 92/160 (57%)

Query:   427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAXXXXXXXXXXXXXXXXX 486
             Q+   L      + S+Q + KE LE ALG LR ++H  +A+P                  
Sbjct:  2376 QLDQLLQEESGTLQSLQ-RDKEDLERALGGLRARIHDSNATPMALEAAKKQQHILERELS 2434

Query:   487 XXXXILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGT---ASLSNGPSVAA- 542
                 +LA NSKKLE+TVA NARLE EL++LRQK+Q  R    NG     S  NG   AA 
Sbjct:  2435 RVHQLLAENSKKLEQTVAGNARLEQELLLLRQKVQAVRGSTTNGMNGDGSHINGDQTAAV 2494

Query:   543 LEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
             L +EL RVQ+LVGD+QRQR ELS+ V+QLTE S  L Q+I
Sbjct:  2495 LASELERVQSLVGDMQRQRHELSSAVRQLTENSTRLYQEI 2534

GO:0005543 "phospholipid binding" evidence=IEA

FB|FBgn0004507 GlyP "Glycogen phosphorylase" [Drosophila melanogaster (taxid:7227)]

 Score = 267 (99.0 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 65/130 (50%), Positives = 80/130 (61%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
             LKF NDGDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYFMCAATLQ I   +K 
Sbjct:   255 LKFFNDGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFMCAATLQDIIRRYK- 313

Query:   313 QGRALLGYSHSSGREVSKSVVRHT-KHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLF 371
                        + +  S+  VR+T  H P    +    + P L  P+   I++  ++HL 
Sbjct:   314 -----------ASKFGSREAVRNTFDHFPDKVAIQLNDTHPSLAIPELMRILVD-EEHLT 361

Query:   372 LDSVIWYISL 381
              +   W I++
Sbjct:   362 WEKA-WDITV 370

GO:0008184 "glycogen phosphorylase activity" evidence=IMP;IDA

GO:0043234 "protein complex" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IDA

GO:0005980 "glycogen catabolic process" evidence=IMP

GO:0060361 "flight" evidence=IMP

UNIPROTKB|E9PMM6 PYGL "Glycogen phosphorylase, liver form" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 3.0e-16, P = 3.0e-16
 Identities = 47/59 (79%), Positives = 49/59 (83%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
             L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct:   221 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 279

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0008184 "glycogen phosphorylase activity" evidence=IEA

WB|WBGene00020696 T22F3.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 229 (85.7 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 45/59 (76%), Positives = 51/59 (86%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
             LKF NDGDY+QAV+DRNL+ENI+RVLYPNDN F GKELRLKQ+YF+ AATLQ I   FK
Sbjct:   289 LKFFNDGDYVQAVMDRNLSENITRVLYPNDNMFLGKELRLKQQYFLVAATLQDIIRRFK 347

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0008184 "glycogen phosphorylase activity" evidence=IEA

GO:0004645 "phosphorylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0051301 "cell division" evidence=IMP

GO:0000910 "cytokinesis" evidence=IMP

UNIPROTKB|F1SFF8 PYGL "Phosphorylase" [Sus scrofa (taxid:9823)]

 Score = 222 (83.2 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 50/73 (68%), Positives = 55/73 (75%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
             L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ +   FK 
Sbjct:   255 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDVIRRFK- 313

Query:   313 QGRALLGYSHSSG 325
                +  G S S+G
Sbjct:   314 --ASKFGSSDSAG 324

GO:0042593 "glucose homeostasis" evidence=IEA

GO:0032052 "bile acid binding" evidence=IEA

GO:0019842 "vitamin binding" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0008184 "glycogen phosphorylase activity" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0002060 "purine nucleobase binding" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ZFIN|ZDB-GENE-041205-1 pygl "phosphorylase, glycogen; liver (Hers disease, glycogen storage disease type VI)" [Danio rerio (taxid:7955)]

 Score = 222 (83.2 bits), Expect = 1.7e-14, P = 1.7e-14
 Identities = 48/67 (71%), Positives = 51/67 (76%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
             L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ +   FK 
Sbjct:   570 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDVIRRFKT 629

Query:   313 QGRALLG 319
               R   G
Sbjct:   630 SKRNTSG 636

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0004645 "phosphorylase activity" evidence=IEA

GO:0008184 "glycogen phosphorylase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1NAD9 PYGL "Phosphorylase" [Gallus gallus (taxid:9031)]

 Score = 221 (82.9 bits), Expect = 1.9e-14, P = 1.9e-14
 Identities = 59/113 (52%), Positives = 66/113 (58%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
             L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK 
Sbjct:   254 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK- 312

Query:   313 QGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILP 365
                +  G S  S R V  S        P    +    + P +  P+   I LP
Sbjct:   313 --ASKFG-STESVRTVFDS-------FPDQVAIQLNDTHPAMAIPELMRIFLP 355

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0002060 "purine nucleobase binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0008184 "glycogen phosphorylase activity" evidence=IEA

GO:0016208 "AMP binding" evidence=IEA

GO:0019842 "vitamin binding" evidence=IEA

GO:0032052 "bile acid binding" evidence=IEA

GO:0042593 "glucose homeostasis" evidence=IEA

UNIPROTKB|E9PK47 PYGL "Phosphorylase" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 2.2e-14, P = 2.2e-14
 Identities = 47/59 (79%), Positives = 49/59 (83%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
             L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct:   255 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

GO:0008184 "glycogen phosphorylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

RGD|3460 Pygb "phosphorylase, glycogen; brain" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 47/59 (79%), Positives = 49/59 (83%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
             LK  N GDYI+AVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct:   255 LKDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0005977 "glycogen metabolic process" evidence=IDA

GO:0005980 "glycogen catabolic process" evidence=IDA

GO:0008144 "drug binding" evidence=IDA

GO:0008184 "glycogen phosphorylase activity" evidence=IEA;IDA;TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0030246 "carbohydrate binding" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IC;IDA

UNIPROTKB|P53534 Pygb "Glycogen phosphorylase, brain form" [Rattus norvegicus (taxid:10116)]

 Score = 220 (82.5 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 47/59 (79%), Positives = 49/59 (83%)

Query:   253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
             LK  N GDYI+AVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct:   255 LKDFNVGDYIEAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.4.1	LOW CONFIDENCE prediction!
4th Layer	2.4.1.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	746
cd04300	797	cd04300, GT1_Glycogen_Phosphorylase, This is a fam	3e-24
pfam00343	712	pfam00343, Phosphorylase, Carbohydrate phosphoryla	3e-22
TIGR02093	794	TIGR02093, P_ylase, glycogen/starch/alpha-glucan p	1e-20
PRK14986	815	PRK14986, PRK14986, glycogen phosphorylase; Provis	6e-15
COG0058	750	COG0058, GlgP, Glucan phosphorylase [Carbohydrate	7e-10
PRK14985	798	PRK14985, PRK14985, maltodextrin phosphorylase; Pr	7e-10
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-05
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	1e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
pfam01576	859	pfam01576, Myosin_tail_1, Myosin tail	4e-04
pfam04156	186	pfam04156, IncA, IncA protein	5e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	6e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.001
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.003
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.004

>gnl|CDD|99996 cd04300, GT1_Glycogen_Phosphorylase, This is a family of oligosaccharide phosphorylases

 Score =  108 bits (272), Expect = 3e-24
 Identities = 37/65 (56%), Positives = 45/65 (69%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
           L   N GDYI+AV ++N AENIS+VLYPND+   GKELRLKQ+YF  +A+LQ I   FK 
Sbjct: 231 LDAFNRGDYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQDIIRRFKK 290

Query: 313 QGRAL 317
               L
Sbjct: 291 THGPL 295

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. Length = 797

>gnl|CDD|215868 pfam00343, Phosphorylase, Carbohydrate phosphorylase

 Score =  101 bits (254), Expect = 3e-22
 Identities = 43/69 (62%), Positives = 51/69 (73%)

Query: 249 EKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISL 308
           E+  L   NDGDY+ AV D+N AENISRVLYPNDN F GKELRLKQ+YF+ +ATLQ I  
Sbjct: 141 EEFNLADFNDGDYLAAVEDKNRAENISRVLYPNDNTFEGKELRLKQQYFLVSATLQDIIR 200

Query: 309 PFKDQGRAL 317
            FK   ++L
Sbjct: 201 RFKKSHKSL 209

The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. Length = 712

>gnl|CDD|233722 TIGR02093, P_ylase, glycogen/starch/alpha-glucan phosphorylases

 Score = 96.6 bits (241), Expect = 1e-20
 Identities = 36/69 (52%), Positives = 46/69 (66%)

Query: 249 EKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISL 308
           E+  L   N GDY +AV ++N AENISRVLYPND+ + GKELRLKQ+YF  +A+LQ I  
Sbjct: 224 EEFDLDAFNAGDYYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQDIIR 283

Query: 309 PFKDQGRAL 317
              +    L
Sbjct: 284 RHLETHPDL 292

This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. Length = 794

>gnl|CDD|184948 PRK14986, PRK14986, glycogen phosphorylase; Provisional

 Score = 78.3 bits (193), Expect = 6e-15
 Identities = 32/53 (60%), Positives = 43/53 (81%), Gaps = 1/53 (1%)

Query: 254 KFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVI 306
           KF N GDY  AV D+N +EN+SRVLYP+D+ + G+ELRL+QEYF+ +AT+Q I
Sbjct: 246 KF-NQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDI 297

Length = 815

>gnl|CDD|223136 COG0058, GlgP, Glucan phosphorylase [Carbohydrate transport and metabolism]

 Score = 62.3 bits (152), Expect = 7e-10
 Identities = 27/54 (50%), Positives = 35/54 (64%), Gaps = 11/54 (20%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVI 306
           L F N G+      ++N A NI+RVLYP D+    KELRLKQEYF+ +A +Q I
Sbjct: 210 LDF-NVGE------NKNDARNITRVLYPGDS----KELRLKQEYFLGSAGVQDI 252

Length = 750

>gnl|CDD|237881 PRK14985, PRK14985, maltodextrin phosphorylase; Provisional

 Score = 62.0 bits (151), Expect = 7e-10
 Identities = 29/59 (49%), Positives = 39/59 (66%), Gaps = 9/59 (15%)

Query: 242 FNLTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCA 300
           F+LT        KF NDGD+++A      AE +++VLYPNDN+  GK+LRL Q+YF CA
Sbjct: 231 FDLT--------KF-NDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCA 280

Length = 798

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 46.2 bits (110), Expect = 7e-05
 Identities = 25/115 (21%), Positives = 51/115 (44%), Gaps = 6/115 (5%)

Query: 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC 528
           AEVE+   +   L +EL+ + + +    ++LEE     A  E+E+  L  +++  + E+ 
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELK 799

Query: 529 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
               +L        L AEL  +     +L+ + + L  ++     +   L +QI 
Sbjct: 800 ALREALD------ELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIE 848

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 45.8 bits (109), Expect = 9e-05
 Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 14/148 (9%)

Query: 447 KEMLENALGSLRHKMHGVHASPAE--VERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
            E LE  L  L   ++ + A  +   +   + +   LE E+SR+ + L    +KL     
Sbjct: 767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826

Query: 505 ANARLESE---LVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALV------- 554
               LE E   L   R  L+   + +     +L NG     LE EL  ++A +       
Sbjct: 827 EKEYLEKEIQELQEQRIDLKEQIKSIEKEIENL-NG-KKEELEEELEELEAALRDLESRL 884

Query: 555 GDLQRQRQELSAQVKQLTEKSNSLSQQI 582
           GDL+++R EL AQ+++L  K   L  QI
Sbjct: 885 GDLKKERDELEAQLRELERKIEELEAQI 912

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 22/107 (20%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 480 LLERELSR---VRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSN 536
           +L R LS     R  L    ++L E     A L+ +L  L+Q+ Q  ++E+   +   + 
Sbjct: 53  VLSRYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQEL---STLEAE 109

Query: 537 GPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
              +    A ++++ A   +L  + +EL  ++ +L +++ +L  +  
Sbjct: 110 LERLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENE 156

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 30/114 (26%), Positives = 61/114 (53%), Gaps = 6/114 (5%)

Query: 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC 528
           A+++  R++   LE ELSR+   L    ++LEE       L+SEL  LR++L+  + E+ 
Sbjct: 232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELL 291

Query: 529 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
                +        LE E+  ++  + +L+ + +EL  ++++L EK  +L +++
Sbjct: 292 ELKEEI------EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEEL 339

Length = 1163

>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 7/133 (5%)

Query: 451 ENALGSLRHKMHGVHASPAE-VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL 509
           E AL +LR K        +E +E+ ++Q+   E+E S++++ +     +L++   A A+L
Sbjct: 119 EEALATLRKKHQDAINELSEQIEQLQKQKAKAEKEKSQLQAEVDDLLAQLDQ--IAKAKL 176

Query: 510 ESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK 569
            +E     ++L+    E+      L     +  L ++  R+Q+   DL RQ +E  AQV 
Sbjct: 177 NAEKK--AKQLESQLSELQVKLDELQR--QLNDLTSQKSRLQSENSDLTRQLEEAEAQVS 232

Query: 570 QLTEKSNSLSQQI 582
            L++  + L  Q+
Sbjct: 233 NLSKLKSQLESQL 245

The myosin molecule is a multi-subunit complex made up of two heavy chains and four light chains it is a fundamental contractile protein found in all eukaryote cell types. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament. The coiled-coil region provides the structural backbone the thick filament. Length = 859

>gnl|CDD|217933 pfam04156, IncA, IncA protein

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 22/127 (17%), Positives = 46/127 (36%), Gaps = 6/127 (4%)

Query: 456 SLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVV 515
               +   +     E+   ++Q   L+ EL  +   +A    +LE+       L   L  
Sbjct: 66  VQSVRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKS 125

Query: 516 LRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKS 575
           L ++L+     +      L         +     V+ L  +L+R ++ L    + + E  
Sbjct: 126 LEERLESLEESIKELAKELREL-----RQDLREEVEELREELERLQENLQRLQEAIQE-L 179

Query: 576 NSLSQQI 582
            SL +Q+
Sbjct: 180 QSLLEQL 186

Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is non-fusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA, is functionally associated with the homotypic fusion of inclusions. This family probably includes members of the wider Inc family rather than just IncA. Length = 186

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.1 bits (102), Expect = 6e-04
 Identities = 29/123 (23%), Positives = 48/123 (39%), Gaps = 6/123 (4%)

Query: 466 ASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR 525
                +E        LE+E+  V+S L     ++EE      +LE  L  L  +L  SR 
Sbjct: 734 KLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRI 793

Query: 526 EVCNGTAS------LSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS 579
                  S            +  +E +L R+      L+++ QEL  Q   L E+  S+ 
Sbjct: 794 PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853

Query: 580 QQI 582
           ++I
Sbjct: 854 KEI 856

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 43.2 bits (102), Expect = 6e-04
 Identities = 28/114 (24%), Positives = 53/114 (46%), Gaps = 13/114 (11%)

Query: 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529
            +E  RRQ   LER+L  ++  LA   ++LE+  +    LE EL  L ++L+  +     
Sbjct: 703 LLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQER--- 759

Query: 530 GTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
                     +  LE EL  ++  +  L+ + +EL  + + L E+   L +++ 
Sbjct: 760 ----------LEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELE 803

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.4 bits (100), Expect = 0.001
 Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 1/115 (0%)

Query: 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC 528
            + +  R +   LER+L  + + L     KL+E     A LE +L  L+++L+    E+ 
Sbjct: 302 QQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELE 361

Query: 529 NGTASLSNGPS-VAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
              A L    S +  LE +L  +++ V  L+ Q   L+ ++++L  +   L  + 
Sbjct: 362 ELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRR 416

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.8 bits (96), Expect = 0.003
 Identities = 26/122 (21%), Positives = 54/122 (44%), Gaps = 8/122 (6%)

Query: 470 EVERYRRQQRLLERELSRVRSI-------LAHNSKKLEETVAANARLESELVVLRQKLQW 522
           E+E    + + LE +L  +R         +    K+L       +RLE +  +LR++L  
Sbjct: 254 ELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLAN 313

Query: 523 SRREVCNGTASLSNGPSVA-ALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQ 581
             R++    A L    S    L  EL  ++  + +L+ + + L A++++L  +   L  +
Sbjct: 314 LERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESR 373

Query: 582 IR 583
           + 
Sbjct: 374 LE 375

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 24/102 (23%), Positives = 51/102 (50%), Gaps = 3/102 (2%)

Query: 475 RRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASL 534
           R +   L++EL+ ++  LA   ++L E    N  L+ EL  L  +L+  ++E+       
Sbjct: 65  RERLPELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKELARIKQLS 124

Query: 535 SNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSN 576
           +N      L+ E R ++  + +L+++ + L A+ ++L E   
Sbjct: 125 AN---AIELDEENRELREELAELKQENEALEAENERLQENEQ 163

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.003
 Identities = 28/123 (22%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 461 MHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKL 520
           + G   +       +R+ + LE EL+ + + L    ++L+        LE  L  LR++L
Sbjct: 652 ITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL 711

Query: 521 QWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQ 580
           +   R++            +AALE EL ++Q+ + +L+ + +EL  ++++L E+   L +
Sbjct: 712 EELERQL------EELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEE 765

Query: 581 QIR 583
           ++ 
Sbjct: 766 ELE 768

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.004
 Identities = 27/109 (24%), Positives = 54/109 (49%), Gaps = 8/109 (7%)

Query: 476 RQQRL--LERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTAS 533
           R++ +  LE ++  +   +A   K L E       LE EL  LR++L+   R++      
Sbjct: 675 RRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKD 734

Query: 534 LSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
           L      A LEAE+ +++  +  L ++  EL A++++L E+     +++
Sbjct: 735 L------ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEEL 777

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.5 bits (95), Expect = 0.004
 Identities = 25/116 (21%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC 528
            E+E+ + +   LE EL  +   L    ++LEE       LE  L  L+++++    +  
Sbjct: 730 EELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQ 789

Query: 529 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP 584
                L        LE EL   +  +  L+R+ + L  + ++L ++   L ++I  
Sbjct: 790 ALQEEL------EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEE 839

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 29/168 (17%), Positives = 65/168 (38%), Gaps = 12/168 (7%)

Query: 426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLEREL 485
           +++  +L    + I  ++ + +E L   L  L+ ++  +     E+E      R    EL
Sbjct: 256 EELQEELEEAEKEIEELKSELEE-LREELEELQEELLELKEEIEELEGEISLLRERLEEL 314

Query: 486 SRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN----------GTASLS 535
                 L    ++L+E + A      E   L ++L+                        
Sbjct: 315 ENELEELEERLEELKEKIEALKEELEERETLLEELE-QLLAELEEAKEELEEKLSALLEE 373

Query: 536 NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
                 AL  EL  ++A + +++ + +EL  +++ L E+   LS+++ 
Sbjct: 374 LEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLE 421

Length = 1163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	746
KOG2099|consensus	843		100.0
PF00343	713	Phosphorylase: Carbohydrate phosphorylase; InterPr	100.0
TIGR02093	794	P_ylase glycogen/starch/alpha-glucan phosphorylase	100.0
PRK14985	798	maltodextrin phosphorylase; Provisional	100.0
cd04300	797	GT1_Glycogen_Phosphorylase This is a family of oli	100.0
PRK14986	815	glycogen phosphorylase; Provisional	100.0
COG0058	750	GlgP Glucan phosphorylase [Carbohydrate transport	100.0
TIGR02094	601	more_P_ylases alpha-glucan phosphorylases. This fa	99.79
cd04299	778	GT1_Glycogen_Phosphorylase_like This family is mos	99.69
PRK11637	428	AmiB activator; Provisional	96.53
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	95.88
PRK11637	428	AmiB activator; Provisional	95.87
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	95.67
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	95.47
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	94.99
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	94.82
PHA02562	562	46 endonuclease subunit; Provisional	94.81
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	94.68
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	94.56
PF10186	302	Atg14: UV radiation resistance protein and autopha	94.54
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.5
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.49
KOG0161|consensus	1930		94.37
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	94.26
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.17
PHA02562	562	46 endonuclease subunit; Provisional	94.12
PRK02224	880	chromosome segregation protein; Provisional	94.08
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	94.04
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	93.87
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	93.86
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	93.74
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.55
PRK02224	880	chromosome segregation protein; Provisional	93.54
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.52
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	93.51
KOG1853|consensus	333		93.48
PRK03918	880	chromosome segregation protein; Provisional	93.39
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.38
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	93.2
PRK09039	343	hypothetical protein; Validated	93.1
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	92.97
KOG0971|consensus	1243		92.82
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	92.77
PRK04863	1486	mukB cell division protein MukB; Provisional	92.31
PF14644	208	DUF4456: Domain of unknown function (DUF4456)	92.26
PRK09841	726	cryptic autophosphorylating protein tyrosine kinas	91.96
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	91.95
KOG0971|consensus	1243		91.9
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	91.82
PRK11519	719	tyrosine kinase; Provisional	91.69
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	91.63
PRK04863	1486	mukB cell division protein MukB; Provisional	91.41
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	91.3
KOG3156|consensus	220		91.28
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	91.24
KOG0161|consensus	1930		91.22
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	90.91
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	90.77
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	90.71
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.47
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	90.37
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	90.22
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	90.15
KOG0240|consensus	607		89.61
PRK09039	343	hypothetical protein; Validated	89.3
PRK11281	1113	hypothetical protein; Provisional	89.2
COG5185	622	HEC1 Protein involved in chromosome segregation, i	88.75
TIGR01010	362	BexC_CtrB_KpsE polysaccharide export inner-membran	88.75
PRK10361	475	DNA recombination protein RmuC; Provisional	88.63
TIGR02971	327	heterocyst_DevB ABC exporter membrane fusion prote	88.45
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	88.36
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	88.16
TIGR03017	444	EpsF chain length determinant protein EpsF. Sequen	88.04
TIGR01000	457	bacteriocin_acc bacteriocin secretion accessory pr	87.43
TIGR01005	754	eps_transp_fam exopolysaccharide transport protein	87.43
COG2433	652	Uncharacterized conserved protein [Function unknow	87.42
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	87.38
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	87.23
TIGR02231	525	conserved hypothetical protein. This family consis	87.16
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	87.11
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.07
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	86.99
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	86.77
PRK10929	1109	putative mechanosensitive channel protein; Provisi	86.73
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	86.52
PF10498	359	IFT57: Intra-flagellar transport protein 57 ; Inte	86.48
PF14988	206	DUF4515: Domain of unknown function (DUF4515)	86.29
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	86.15
TIGR03007	498	pepcterm_ChnLen polysaccharide chain length determ	86.15
KOG0995|consensus	581		85.85
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	85.65
KOG0933|consensus	1174		85.64
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	85.23
PRK10929	1109	putative mechanosensitive channel protein; Provisi	84.8
cd09237	356	V_ScBro1_like Protein-interacting V-domain of Sacc	84.53
PF01544	292	CorA: CorA-like Mg2+ transporter protein; InterPro	84.12
TIGR00998	334	8a0101 efflux pump membrane protein (multidrug res	84.08
PRK10476	346	multidrug resistance protein MdtN; Provisional	83.83
PF10186	302	Atg14: UV radiation resistance protein and autopha	83.38
TIGR02680	1353	conserved hypothetical protein TIGR02680. Members	83.12
COG3206	458	GumC Uncharacterized protein involved in exopolysa	82.25
COG4372	499	Uncharacterized protein conserved in bacteria with	82.08
KOG0962|consensus	1294		81.35
KOG1853|consensus	333		80.75
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	80.59
PRK11281	1113	hypothetical protein; Provisional	80.4
KOG0976|consensus	1265		80.27
COG4942	420	Membrane-bound metallopeptidase [Cell division and	80.01

>KOG2099|consensus

Probab=100.00  E-value=2.2e-56  Score=481.49  Aligned_cols=165  Identities=38%  Similarity=0.508  Sum_probs=153.4

Q ss_pred             hcccccccCCcceeEEeecc--CCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHH
Q psy2772         227 LKRHLVELEKQVSITFNLTE--RNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ  304 (746)
Q Consensus       227 ~~~~v~Gye~~~vNtLRLwe--sseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQ  304 (746)
                      ...||.||++.++||||||.  +..+|||..||.|+|+.|+..++.||+||+||||||++.+||+||||||||+|||+||
T Consensus       227 YD~PvPGyk~n~vntlRLWsaka~~df~l~~fN~Gdy~~av~~~~~AenI~~VLYPnDnf~eGKeLRLKQqyf~caAtLq  306 (843)
T KOG2099|consen  227 YDTPVPGYKNNTVNTLRLWSAKAPNDFDLKDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQQYFLCAATLQ  306 (843)
T ss_pred             cCCCCCCcccCcceeeeeeccCCCCCCCHHhccCchHHHHHHHHHhhhhceEEecCCCccccchhhhhhhhhhhhHHHHH
Confidence            45789999999999999994  5778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---E
Q psy2772         305 VISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---L  381 (746)
Q Consensus       305 DIIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~  381 (746)
                      |||||||.+..   ++        -+.+...|++||+|||||+|||||+||||||||||+|.+|++|++|  |+||   |
T Consensus       307 DIirRFk~sk~---~~--------r~~~~~~~~~FPdkVAiQlNDTHPtLaIpELmRiLvD~e~l~W~~A--Wdit~kT~  373 (843)
T KOG2099|consen  307 DIIRRFKSSKF---GC--------REPVRTNFEEFPDKVAIQLNDTHPTLAIPELMRILVDLEGLDWDKA--WDITQKTC  373 (843)
T ss_pred             HHHHHHhhccc---Cc--------ccccccchhhCcHhheeeccCCCccccHHHHHHHHHhcccCCHHHH--HHHhhhhe
Confidence            99999998763   21        2457788999999999999999999999999999999999999999  9998   9


Q ss_pred             eeecccccccccccccccccccc
Q psy2772         382 LEVYRLGGPLACGPWKVHAELPI  404 (746)
Q Consensus       382 aYTNHTILpEALEkWpv~~~l~i  404 (746)
                      ||||||+||||||+||+++.--+
T Consensus       374 AYTNHTVlpEALErWp~~L~e~L  396 (843)
T KOG2099|consen  374 AYTNHTVLPEALERWPVSLMEKL  396 (843)
T ss_pred             eeccccccHHHHHHhhHHHHHHh
Confidence            99999999999999999886443

>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases

Probab=100.00  E-value=5.7e-53  Score=465.82  Aligned_cols=155  Identities=32%  Similarity=0.469  Sum_probs=139.1

Q ss_pred             hcccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHH
Q psy2772         227 LKRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ  304 (746)
Q Consensus       227 ~~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQ  304 (746)
                      ..++|+||+++++||||||  +++++||++.||.|+|.+|+++++.+|+||+||||||++++||+|||||||||||||||
T Consensus       117 yD~pi~Gy~~~~vn~LRLw~a~~~~~fd~~~fn~gdy~~a~~~~~~~e~is~vLYP~d~~~~Gk~LRLkQqyf~vsa~lq  196 (713)
T PF00343_consen  117 YDMPIPGYRTKTVNTLRLWSAEPSEEFDLESFNRGDYIKAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQ  196 (713)
T ss_dssp             EEEEEE-SSSS-EEEEEEEEEEESSSTTHHHHHTTCHHHHHHHHHHHHGGGTBSS-SSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCceeecCCCCceEEEEEeccCCCcccChhhcCCCcHHHHHHHHHHhhceeeecCCCCccccchhhhhhhHhhhhhhHHH
Confidence            4689999999999999999  57999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---E
Q psy2772         305 VISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---L  381 (746)
Q Consensus       305 DIIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~  381 (746)
                      |||++|++.+.+                   |++||++++||||||||+|+|||+||+|||++|++|++|  |+||   |
T Consensus       197 diir~~~~~~~~-------------------~~~~~~~~~ihlNdtHpa~ai~ElmR~L~de~gl~~~eA--~eiv~~~~  255 (713)
T PF00343_consen  197 DIIRRFKKSHGD-------------------LREFPDKVVIHLNDTHPAFAIPELMRILMDEEGLSWDEA--WEIVRKTF  255 (713)
T ss_dssp             HHHHHHHHTTCC-------------------GGGHHHHEEEEEESSTTTTHHHHHHHHHHHTT---HHHH--HHHHHHHE
T ss_pred             HHHHHHHHhCCC-------------------hHHCCcceEEeecCCccHHHHHHHHHHHHHHcCCCHHHH--HHHHHhce
Confidence            999999999964                   455699999999999999999999999999999999999  9999   9


Q ss_pred             eeecccccccccccccccccc
Q psy2772         382 LEVYRLGGPLACGPWKVHAEL  402 (746)
Q Consensus       382 aYTNHTILpEALEkWpv~~~l  402 (746)
                      +|||||++|||||+||+++..
T Consensus       256 ~fTnHT~vpealE~wp~~l~~  276 (713)
T PF00343_consen  256 AFTNHTPVPEALEKWPVDLFE  276 (713)
T ss_dssp             EEEE--SSGGGS-EEEHHHHH
T ss_pred             eeeccccccccccccCHHHHH
Confidence            999999999999999998864

These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....

>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases

Probab=100.00  E-value=3.2e-49  Score=439.89  Aligned_cols=156  Identities=31%  Similarity=0.442  Sum_probs=147.9

Q ss_pred             cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772         228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV  305 (746)
Q Consensus       228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD  305 (746)
                      .++|+||+++++|+||||  ++.+.||++.||.|+|.+|++++..+|+||+||||+|++++||+|||||||||||||+||
T Consensus       201 D~pi~Gy~~~~vn~LRLW~a~~~~~f~l~~fn~gdy~~a~~~~~~~e~It~vLYp~D~~~~Gk~lRLkQeyfl~~aglqd  280 (794)
T TIGR02093       201 DVPVPGYRTDTVNTLRLWSAEAPEEFDLDAFNAGDYYEAVEEKNRAENISRVLYPNDSTYEGKELRLKQQYFFVSASLQD  280 (794)
T ss_pred             ceeecCCCCCceEEEEEEEecCccccCHhhccCccHhhhhhChhhcCccccCCcCCCCccchHHHHHHHHHHhhhhHHHH
Confidence            688999999999999999  567889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772         306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL  382 (746)
Q Consensus       306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a  382 (746)
                      |||+|++.+.+                   |+.||++++||||||||+|+||||||+|+|++|++|++|  |+||   |+
T Consensus       281 iir~~~~~~~~-------------------l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~A--w~iv~~~~~  339 (794)
T TIGR02093       281 IIRRHLETHPD-------------------LSDFPKKVAIQLNDTHPALAIPELMRLLIDEEGMDWDEA--WDITTKTFA  339 (794)
T ss_pred             HHHHHHHhCCC-------------------hhhCCcceEEEecCCchHHHHHHHHHHHHHhcCCCHHHH--HHHHHhhee
Confidence            99999998853                   556699999999999999999999999999999999999  9998   99


Q ss_pred             eecccccccccccccccccccc
Q psy2772         383 EVYRLGGPLACGPWKVHAELPI  404 (746)
Q Consensus       383 YTNHTILpEALEkWpv~~~l~i  404 (746)
                      |||||++|||||+||+++...+
T Consensus       340 yTnHT~lpealE~wp~~l~~~~  361 (794)
T TIGR02093       340 YTNHTLLPEALEKWPVDLFQKL  361 (794)
T ss_pred             cccCCCChHHhCCcCHHHHHHH
Confidence            9999999999999999887543

This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.

>PRK14985 maltodextrin phosphorylase; Provisional

Probab=100.00  E-value=1.8e-48  Score=433.78  Aligned_cols=156  Identities=27%  Similarity=0.420  Sum_probs=147.7

Q ss_pred             cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772         228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV  305 (746)
Q Consensus       228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD  305 (746)
                      .++|+||+++++|+||||  ++.++||+..||.|||.+|++++..+|+||+||||+|++++||+|||||||||||||+||
T Consensus       206 Dvpi~Gy~~~~~n~LRLW~a~~~~~~~l~~fn~gdy~~a~en~~~~e~It~~LYp~D~~~~Gk~lRLkQEyfl~sa~vqd  285 (798)
T PRK14985        206 DLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVAD  285 (798)
T ss_pred             cccccCCCCCceEEEEEeEcCCCCccCHHHcCCcchhhccccchhhcchhceecCCCCCcchHHHHHHHHHHHHHHHHHH
Confidence            689999999999999999  467799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772         306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL  382 (746)
Q Consensus       306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a  382 (746)
                      |||+|++.+.+                   |+.||++++||||||||+|+||||||+|+|++|++|++|  |+||   |+
T Consensus       286 ilr~~~~~~~~-------------------l~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~wd~A--w~iv~~~~~  344 (798)
T PRK14985        286 ILRRHHLAGRK-------------------LHELPDYEVIQLNDTHPTIAIPELLRVLLDEHQLSWDDA--WAITSKTFA  344 (798)
T ss_pred             HHHHHHhcCCC-------------------hhhCCCCcEEEecCCcHHHHHHHHHHHHHHhcCCCHHHH--HHHHHHhee
Confidence            99999997753                   456699999999999999999999999999999999999  9999   99


Q ss_pred             eecccccccccccccccccccc
Q psy2772         383 EVYRLGGPLACGPWKVHAELPI  404 (746)
Q Consensus       383 YTNHTILpEALEkWpv~~~l~i  404 (746)
                      |||||++|||||+||+++...+
T Consensus       345 yTnHT~lpealE~w~~~l~~~~  366 (798)
T PRK14985        345 YTNHTLMPEALECWDEKLVKSL  366 (798)
T ss_pred             eecCCCChhhhCCCCHHHHHHH
Confidence            9999999999999999887644

>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases

Probab=100.00  E-value=9.7e-48  Score=428.56  Aligned_cols=156  Identities=33%  Similarity=0.455  Sum_probs=148.2

Q ss_pred             cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772         228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV  305 (746)
Q Consensus       228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD  305 (746)
                      .++|+||+++++|+||||  ++.+.||+..||+|+|.++++++..+|+||+||||+||+++||+|||||||||||||+||
T Consensus       204 Dvpi~Gy~~~~~n~LRLW~a~~~~~~dl~~fn~gdy~~a~~~~~~~~~It~~LYp~Ds~~~Gk~lRL~Qeyfl~sag~qd  283 (797)
T cd04300         204 DTPIPGYGTNTVNTLRLWSAEASEEFDLDAFNRGDYIRAVEEKNRAENISKVLYPNDSTEEGKELRLKQQYFFVSASLQD  283 (797)
T ss_pred             ceeecCCCCCceEEEEEEEeeCCCCcCHHHhcCCchhhHHhhHHHhhhhhcccCCCCCchhHHHHHHHHHHHHhhhHHHH
Confidence            489999999999999999  578889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772         306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL  382 (746)
Q Consensus       306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a  382 (746)
                      ||++|++.+.+                   ++.||++++||||||||+|+||||||+|+|++|++|++|  |+||   |+
T Consensus       284 ilr~~~~~~~~-------------------~~~l~~~~~ihlNDtHpalai~ElmR~L~d~~gl~w~~A--w~i~~~~~~  342 (797)
T cd04300         284 IIRRFKKTHGP-------------------LSEFPDKVAIQLNDTHPALAIPELMRILVDEEGLDWDEA--WDITTKTFA  342 (797)
T ss_pred             HHHHHHHhCCC-------------------hhhCCCceEEEecCCcHHHHHHHHHHHHHHhcCCCHHHH--HHHHHhhee
Confidence            99999999864                   456799999999999999999999999999999999999  9998   99


Q ss_pred             eecccccccccccccccccccc
Q psy2772         383 EVYRLGGPLACGPWKVHAELPI  404 (746)
Q Consensus       383 YTNHTILpEALEkWpv~~~l~i  404 (746)
                      |||||++|||||+||+++...+
T Consensus       343 yTnHT~lpealE~wp~~l~~~~  364 (797)
T cd04300         343 YTNHTLLPEALEKWPVDLFERL  364 (797)
T ss_pred             eecCCCchHHhCccCHHHHHHH
Confidence            9999999999999999887544

It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.

>PRK14986 glycogen phosphorylase; Provisional

Probab=100.00  E-value=2.2e-46  Score=418.01  Aligned_cols=155  Identities=27%  Similarity=0.425  Sum_probs=147.1

Q ss_pred             ccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHHH
Q psy2772         229 RHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVI  306 (746)
Q Consensus       229 ~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQDI  306 (746)
                      ++|+||+++++|+||||  ++.++||++.||.|+|..++.+++.+|+||+||||+|++|+||+|||||||||||||+|||
T Consensus       218 ~pipgy~t~~vn~lRLW~a~~~~~fd~~~fn~g~y~~a~~~~n~~e~Is~~LYp~D~~y~Gk~lRLkQEyfl~~agv~di  297 (815)
T PRK14986        218 QIIPGYDTDATNTLRLWSAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTYSGRELRLRQEYFLVSATVQDI  297 (815)
T ss_pred             ccccCCCCCceEEEEEEEeecCcccCHhhcccccHHHHhhccchhhccccccCCCCCCcccHHHHHHHHHHhhhHHHHHH
Confidence            47999999999999999  5788999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Eee
Q psy2772         307 SLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LLE  383 (746)
Q Consensus       307 IRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~aY  383 (746)
                      ||+|++.+.+                   ++.||++++||||||||+++||||||+|+|++|++|++|  |+||   |+|
T Consensus       298 ~r~~~~~~~~-------------------l~~l~~~v~ihlNDtHpa~~i~ElmR~L~d~~gl~~~eA--~~iv~~~~~f  356 (815)
T PRK14986        298 LSRHYQLHKT-------------------YDNLADKIAIHLNDTHPVLSIPELMRLLIDEHKFSWDDA--FEVCCQVFSY  356 (815)
T ss_pred             HHHHHHhCCC-------------------HhhCCcccEEEecCCcHHHHHHHHHHHHHHhcCCCHHHH--HHHHHhhEEe
Confidence            9999998863                   456699999999999999999999999999999999999  9999   999


Q ss_pred             ecccccccccccccccccccc
Q psy2772         384 VYRLGGPLACGPWKVHAELPI  404 (746)
Q Consensus       384 TNHTILpEALEkWpv~~~l~i  404 (746)
                      ||||++|||+|+||+++...+
T Consensus       357 TnHT~lpealE~w~~~l~~~~  377 (815)
T PRK14986        357 TNHTLMSEALETWPVDMLGKI  377 (815)
T ss_pred             ecccCChHHhCcCCHHHHHHH
Confidence            999999999999999887544

>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]

Probab=100.00  E-value=2.7e-37  Score=342.88  Aligned_cols=142  Identities=26%  Similarity=0.320  Sum_probs=128.3

Q ss_pred             HHhcccccccCCcceeEEeec--cCCC-CCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhh
Q psy2772         225 EELKRHLVELEKQVSITFNLT--ERNE-KIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAA  301 (746)
Q Consensus       225 ~~~~~~v~Gye~~~vNtLRLw--esse-eFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSA  301 (746)
                      ..++++|+||++ .+|+||||  ++.. +|+|..||.|      ++...+++||+||||+||    ++|||+||||||||
T Consensus       179 ~~~d~~V~g~~~-~~~~lrlW~a~~~~~~~~l~~~n~~------e~~~~~~~iT~~LYp~Ds----~elRl~Qeyfl~~a  247 (750)
T COG0058         179 VPYDVPVPGYDN-RVVTLRLWQAQVGRVPLYLLDFNVG------ENKNDARNITRVLYPGDS----KELRLKQEYFLGSA  247 (750)
T ss_pred             ceeeeeEEeccC-cEEEEEEEEEecCccceEeecCCCc------ccchhhhhHHhhcCCCCc----HHHHHhhhheeeeH
Confidence            467899999999 88999999  5666 8999999999      788899999999999999    99999999999999


Q ss_pred             hHHHHHHHH-HHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE
Q psy2772         302 TLQVISLPF-KDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS  380 (746)
Q Consensus       302 SLQDIIRrf-Kkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt  380 (746)
                      |+|+|++++ ++.+ +        ++.+           ++|    ||||||+++||||||+|+|++|++|++|  |+|+
T Consensus       248 gvq~I~~~~~~~~~-~--------~~~~-----------~~~----lNdtHpa~~i~ElmRll~d~~g~~~~~A--~~~~  301 (750)
T COG0058         248 GVQDILARGHLEHH-D--------LDVL-----------ADH----LNDTHPALAIPELMRLLIDEEGLSWDEA--WEIV  301 (750)
T ss_pred             HHHHHHHHhhhccc-c--------ccch-----------hhh----hcCCChhHhHHHHHHHHHHHhcCCHHHH--HHHH
Confidence            999999995 5555 4        3334           555    9999999999999999999999999999  9998


Q ss_pred             ---Eeeeccccccccccccccccccc
Q psy2772         381 ---LLEVYRLGGPLACGPWKVHAELP  403 (746)
Q Consensus       381 ---~aYTNHTILpEALEkWpv~~~l~  403 (746)
                         |+|||||++|||+|+||+++..-
T Consensus       302 ~~~~~yTnHTplpeale~wp~~l~~~  327 (750)
T COG0058         302 RKTFVYTNHTPLPEALETWPVELFKK  327 (750)
T ss_pred             hheeeeecCCCchhhhccCCHHHHHH
Confidence               99999999999999999998654

>TIGR02094 more_P_ylases alpha-glucan phosphorylases

Probab=99.79  E-value=2e-20  Score=205.17  Aligned_cols=131  Identities=13%  Similarity=0.137  Sum_probs=110.8

Q ss_pred             hcccccccCCcceeEEeeccC-CCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772         227 LKRHLVELEKQVSITFNLTER-NEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV  305 (746)
Q Consensus       227 ~~~~v~Gye~~~vNtLRLwes-seeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD  305 (746)
                      ..+++.|    .++++|||.. .+.|++-.|+.++    .++....++||.+|||+|     +.+|++|||||++|++++
T Consensus        88 ~~v~i~g----~~~~~rlw~~~~~~v~lylld~~~----~~n~~~~R~it~~LY~~D-----~~~R~~Qe~fl~~a~l~~  154 (601)
T TIGR02094        88 ISVRIRG----RDVYAKVWRVQVGRVPLYLLDTNI----PENSEDDRWITGRLYGGD-----KEMRIAQEIVLGIGGVRA  154 (601)
T ss_pred             EEEecCC----cEEEEEEEEEEeCCCCEEEecCCC----cccchhhcCccCCCCCCC-----HHHHHHHHHHHHHHHHHH
Confidence            3466666    4699999954 3568888888776    556677899999999988     789999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772         306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL  382 (746)
Q Consensus       306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a  382 (746)
                      |-    +-+                         -++.+||+||+||+|+++||||+|+ ++++.|++|  |+|+   |.
T Consensus       155 l~----~l~-------------------------~~pdviH~ND~Htal~~~el~r~l~-~~~~~~~~a--~~~~~~~~v  202 (601)
T TIGR02094       155 LR----ALG-------------------------IDPDVYHLNEGHAAFVTLERIRELI-AQGLSFEEA--WEAVRKSSL  202 (601)
T ss_pred             HH----HcC-------------------------CCceEEEeCCchHHHHHHHHHHHHH-HcCCCHHHH--HHhcCCeEE
Confidence            82    111                         1568999999999999999999999 789999999  8875   99


Q ss_pred             eecccccccccccccccccc
Q psy2772         383 EVYRLGGPLACGPWKVHAEL  402 (746)
Q Consensus       383 YTNHTILpEALEkWpv~~~l  402 (746)
                      ||+||+.++++|+||+++..
T Consensus       203 fTiHt~~~qG~e~f~~~~~~  222 (601)
T TIGR02094       203 FTTHTPVPAGHDVFPEDLMR  222 (601)
T ss_pred             EeCCCchHHHhhhcCHHHHH
Confidence            99999999999999987764

This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.

>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences

Probab=99.69  E-value=5.1e-18  Score=191.26  Aligned_cols=129  Identities=12%  Similarity=0.101  Sum_probs=108.1

Q ss_pred             ccccccCCcceeEEeeccC-CCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHHHH
Q psy2772         229 RHLVELEKQVSITFNLTER-NEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVIS  307 (746)
Q Consensus       229 ~~v~Gye~~~vNtLRLwes-seeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQDII  307 (746)
                      +++.|+.    .++|+|.+ ...+++-.|+.+.|    ++....+.||.+|||+|     +.+||+|||||+.|+++.| 
T Consensus       177 v~l~g~~----v~~rvw~~~vg~v~lylLDtd~~----~n~~~~R~iT~~LYg~D-----~~~Rl~Qe~~Lg~agl~~L-  242 (778)
T cd04299         177 VELPGRT----VYARVWKAQVGRVPLYLLDTDIP----ENSPDDRGITDRLYGGD-----QETRIQQEILLGIGGVRAL-  242 (778)
T ss_pred             EeeCCCc----eEEEEEEEEcCCCCEEEecCCcc----ccchhhcccccCCCCCc-----HHHHHHHHHHHHHHHHHHH-
Confidence            6666643    57999954 34588888888876    44556689999999987     7899999999999999987 


Q ss_pred             HHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Eeee
Q psy2772         308 LPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LLEV  384 (746)
Q Consensus       308 RrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~aYT  384 (746)
                      +.+   +                     +    ++.+||+||+||+|+++|+||+|++++|++|++|  |+++   |.||
T Consensus       243 r~l---g---------------------~----~pdViH~ND~Haal~~lE~~R~ll~~~g~~~~~A--~e~vr~~tvFT  292 (778)
T cd04299         243 RAL---G---------------------I----KPTVYHMNEGHAAFLGLERIRELMAEGGLSFDEA--LEAVRASTVFT  292 (778)
T ss_pred             HHh---C---------------------C----CCeEEEeCCCcHHHHHHHHHHHHHHHcCCCHHHH--HHhhCCeEEEe
Confidence            432   2                     1    3579999999999999999999998889999999  8865   9999


Q ss_pred             ccccccccccccccccc
Q psy2772         385 YRLGGPLACGPWKVHAE  401 (746)
Q Consensus       385 NHTILpEALEkWpv~~~  401 (746)
                      +||+.++++|.||.++.
T Consensus       293 tHTpvpqG~d~Fp~~l~  309 (778)
T cd04299         293 THTPVPAGHDRFPPDLV  309 (778)
T ss_pred             cCCchHHHhhhCCHHHH
Confidence            99999999999998877

Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.

>PRK11637 AmiB activator; Provisional

Probab=96.53  E-value=0.075  Score=56.96  Aligned_cols=116  Identities=20%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             cCCCCcceeeecchhhhhhhhhhhhhh------hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHH
Q psy2772         406 VRPVSPIRIRIGVMIHAISRDQIASKL------HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQR  479 (746)
Q Consensus       406 vrp~~p~ri~e~d~d~klSr~ce~dKi------lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQr  479 (746)
                      .|.+||-|.++.-+... +.+|-.-=+      -.+++.++++++++++++++-+..+..++....   ..++.+..|-.
T Consensus        10 ~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~---~~l~~l~~qi~   85 (428)
T PRK11637         10 TRAVKPRRFAIRPILYA-SVLSAGVLLCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLL---AQLKKQEEAIS   85 (428)
T ss_pred             cccccchhhhhhhHHHH-HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence            35677777776654433 223311111      134566666666666666666666665554322   22444444445


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772         480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR  525 (746)
Q Consensus       480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~  525 (746)
                      .++++|..+..+|+..-++++.+=.+...+|.++..++..|..+++
T Consensus        86 ~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlr  131 (428)
T PRK11637         86 QASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLD  131 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555555555555555555554443

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=95.88  E-value=0.3  Score=55.91  Aligned_cols=25  Identities=12%  Similarity=0.222  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         544 EAELRRVQALVGDLQRQRQELSAQV  568 (746)
Q Consensus       544 ekELwRIQdVvggLsrQRqeLs~qV  568 (746)
                      +.++..++.-+..|.++.+++..++
T Consensus       816 ~~~l~~~~~~~~~l~~~~~~l~~~~  840 (1179)
T TIGR02168       816 NEEAANLRERLESLERRIAATERRL  840 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444433333344333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PRK11637 AmiB activator; Provisional

Probab=95.87  E-value=0.62  Score=50.12  Aligned_cols=91  Identities=23%  Similarity=0.280  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy2772         472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQ  551 (746)
Q Consensus       472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQ  551 (746)
                      ..+...+..+=+++...+.+|...-++||+..++...+..++..-+..|+.+......         ..+.|++++...+
T Consensus       162 ~~i~~~d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~---------~l~~L~~~~~~~~  232 (428)
T PRK11637        162 GYLNQARQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKK---------TLTGLESSLQKDQ  232 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH
Confidence            3444455556667777777777777777777777777777777777777766643221         3445555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy2772         552 ALVGDLQRQRQELSAQVKQL  571 (746)
Q Consensus       552 dVvggLsrQRqeLs~qVrqL  571 (746)
                      ..+..|+++.+.|......|
T Consensus       233 ~~l~~l~~~~~~L~~~I~~l  252 (428)
T PRK11637        233 QQLSELRANESRLRDSIARA  252 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            55555655555555555544

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=95.67  E-value=0.21  Score=52.68  Aligned_cols=128  Identities=20%  Similarity=0.159  Sum_probs=54.4

Q ss_pred             hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772         429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANAR  508 (746)
Q Consensus       429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR  508 (746)
                      .|.++..++..+..++.|++.....|..+.    ...+.+...+.+...-..|++|-.....+|...-++-++..+|-..
T Consensus         7 ~~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~----~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~   82 (314)
T PF04111_consen    7 TDLLLEQLDKQLEQAEKERDTYQEFLKKLE----EESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEE   82 (314)
T ss_dssp             ---------------------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999998887    2223345555555555556666666666665555555555555555


Q ss_pred             hHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772         509 LESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTE  573 (746)
Q Consensus       509 LE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~  573 (746)
                      ||.+...|.+.-..-.             .+...++.++-+.++-...|..|.+-.+++++.|..
T Consensus        83 le~e~~~l~~eE~~~~-------------~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k  134 (314)
T PF04111_consen   83 LEEELEELDEEEEEYW-------------REYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK  134 (314)
T ss_dssp             HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred             HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555543322111             144557777777777777777777777777777753

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=95.47  E-value=0.48  Score=49.72  Aligned_cols=120  Identities=20%  Similarity=0.232  Sum_probs=68.7

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHH----HHHHHHHHHHH----HHHHHHHHHHHHhhh
Q psy2772         425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAE----VERYRRQQRLL----ERELSRVRSILAHNS  496 (746)
Q Consensus       425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~----~EKi~~QQrlL----E~eLsrVRaeLSrnS  496 (746)
                      |+.-.+-|...++..+..|+.|+..|...+..+..-+....+--+.    +..++.....+    +.+|...|.+|+...
T Consensus       143 R~~ll~gl~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~  222 (325)
T PF08317_consen  143 RMQLLEGLKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQK  222 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHH
Confidence            4455666777778888888888888877776665543333222111    11111112212    245666666666666


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHH
Q psy2772         497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDL  557 (746)
Q Consensus       497 kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggL  557 (746)
                      .+++.-=.+.+.|+.++..+++++.+--.             ++..++.|+...+.+.+..
T Consensus       223 ~~i~~~k~~l~el~~el~~l~~~i~~~~~-------------~k~~l~~eI~e~~~~~~~~  270 (325)
T PF08317_consen  223 EEIEAKKKELAELQEELEELEEKIEELEE-------------QKQELLAEIAEAEKIREEC  270 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHh
Confidence            66666666666666666666666653321             5555666666666655543

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=94.99  E-value=0.62  Score=53.90  Aligned_cols=22  Identities=9%  Similarity=0.312  Sum_probs=10.1

Q ss_pred             HHHHHHHHHHhhhccccccccc
Q psy2772         562 QELSAQVKQLTEKSNSLSQQIR  583 (746)
Q Consensus       562 qeLs~qVrqLt~~s~~l~~qi~  583 (746)
                      .++..+...+.+....+..++.
T Consensus       465 ~~~~~~l~~~~~~l~~l~~~l~  486 (1164)
T TIGR02169       465 SKYEQELYDLKEEYDRVEKELS  486 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333344444444555555554

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=94.82  E-value=1.3  Score=45.81  Aligned_cols=83  Identities=20%  Similarity=0.247  Sum_probs=45.6

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhhHHH
Q psy2772         436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN---SKKLEETVAANARLESE  512 (746)
Q Consensus       436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn---SkELE~twaEyaRLE~E  512 (746)
                      .+..+..++..++.|+..+..+..++++...   .++.+..|...+++++.+....+.+.   ..+++.+-.++..++.+
T Consensus       135 ~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~---~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~~~~~~~~~~~~~  211 (423)
T TIGR01843       135 FESRKSTLRAQLELILAQIKQLEAELAGLQA---QLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERERAEAQGE  211 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhH
Confidence            3344445555566666666666666555442   34455556666666666665555542   34555555555555555


Q ss_pred             HHHHHHHHH
Q psy2772         513 LVVLRQKLQ  521 (746)
Q Consensus       513 V~~LRqkLQ  521 (746)
                      +..++..+.
T Consensus       212 l~~~~~~l~  220 (423)
T TIGR01843       212 LGRLEAELE  220 (423)
T ss_pred             HHHHHHHHH
Confidence            555555544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.81  E-value=0.91  Score=49.27  Aligned_cols=91  Identities=9%  Similarity=0.168  Sum_probs=51.5

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhH--h----hhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHH
Q psy2772         431 KLHSRGRNICSVQGQAKEMLENALGSLRH--K----MHGVHASPAEVERYRRQQRLLERELSRVRSILAHN---SKKLEE  501 (746)
Q Consensus       431 KilqelE~kLq~Lk~DKD~LEsAL~~L~q--q----ME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn---SkELE~  501 (746)
                      ..|++++..+..++.+.+.++..+.-.+.  .    -....+.|..++.+..|..-|+.+|..+...++..   -.++.+
T Consensus       255 ~~L~~l~~~~~~~~~~l~~~~~~~~~~~~~~~Cp~C~~~~~~~~~~~~~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~  334 (562)
T PHA02562        255 AALNKLNTAAAKIKSKIEQFQKVIKMYEKGGVCPTCTQQISEGPDRITKIKDKLKELQHSLEKLDTAIDELEEIMDEFNE  334 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33555555555555555555555555521  0    01112238888888888888888888888877733   333444


Q ss_pred             HHHHHhhhHHHHHHHHHHHH
Q psy2772         502 TVAANARLESELVVLRQKLQ  521 (746)
Q Consensus       502 twaEyaRLE~EV~~LRqkLQ  521 (746)
                      .-....+|++.+..+|..+.
T Consensus       335 ~~~~i~el~~~i~~~~~~i~  354 (562)
T PHA02562        335 QSKKLLELKNKISTNKQSLI  354 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444445545544444443

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=94.68  E-value=1  Score=48.42  Aligned_cols=100  Identities=19%  Similarity=0.165  Sum_probs=59.5

Q ss_pred             hhhhhhhhhhhhhhhhhhhhHHHH--------HHHHHHHhHhhhccCCChHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q psy2772         427 QIASKLHSRGRNICSVQGQAKEML--------ENALGSLRHKMHGVHASPAEVERYRRQ-----QRLLERELSRVRSILA  493 (746)
Q Consensus       427 ce~dKilqelE~kLq~Lk~DKD~L--------EsAL~~L~qqME~~~dqPa~~EKi~~Q-----QrlLE~eLsrVRaeLS  493 (746)
                      +|--.|-..|=.+|++|+.+|+.|        |..-..|..+|.+-++-...+|..-.|     =..|+..|.+.+.+..
T Consensus        73 qEEE~isN~LlKkl~~l~keKe~L~~~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~  152 (310)
T PF09755_consen   73 QEEEFISNTLLKKLQQLKKEKETLALKYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS  152 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            333445555556777888888877        444455666777776666666555443     2356666666666666


Q ss_pred             hhhHHHHHHHHHHhhh----HHHHHHHHHHHHHHHhh
Q psy2772         494 HNSKKLEETVAANARL----ESELVVLRQKLQWSRRE  526 (746)
Q Consensus       494 rnSkELE~twaEyaRL----E~EV~~LRqkLQaQr~~  526 (746)
                      ...++||+--+|--.|    |+|=+.|=++||-||..
T Consensus       153 ~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~  189 (310)
T PF09755_consen  153 AKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDK  189 (310)
T ss_pred             HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666665555444    44444555555555543

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=94.56  E-value=1.5  Score=51.15  Aligned_cols=145  Identities=22%  Similarity=0.249  Sum_probs=107.6

Q ss_pred             hhhhhhhhhhhh-hhhhhhhhhhhhhhhHHHHHHHHHHHhHh--hhc-cCCCh---------HHHHHHHHHHHHHHHHHH
Q psy2772         420 IHAISRDQIASK-LHSRGRNICSVQGQAKEMLENALGSLRHK--MHG-VHASP---------AEVERYRRQQRLLERELS  486 (746)
Q Consensus       420 d~klSr~ce~dK-ilqelE~kLq~Lk~DKD~LEsAL~~L~qq--ME~-~~dqP---------a~~EKi~~QQrlLE~eLs  486 (746)
                      .+.|.+-+.+|| -|+.+|.+|...++-|-.||+=|.--+..  .+. -...|         ...|..+.-.+.||.|+.
T Consensus       476 l~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r~e~~e~~r~r~~~lE~E~~  555 (697)
T PF09726_consen  476 LQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATRQECAESCRQRRRQLESELK  555 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhccchhHHHHHHHHHHHHHHHH
Confidence            356788888998 57899999999999999999999887754  222 22334         566777888899999999


Q ss_pred             HHHHHHHhh---hHHHHHHHHHHhhh----HHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHH----HHHHHHHHHHH
Q psy2772         487 RVRSILAHN---SKKLEETVAANARL----ESELVVLRQKLQWSRREVCNGTASLSNGPSVAALE----AELRRVQALVG  555 (746)
Q Consensus       487 rVRaeLSrn---SkELE~twaEyaRL----E~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLe----kELwRIQdVvg  555 (746)
                      +.|.+|-.-   .-+||.-..++-..    +.|.+.|..+|++-.+.             ++.||    .|=|==+||..
T Consensus       556 ~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk-------------~~~LE~sLsaEtriKldLfs  622 (697)
T PF09726_consen  556 KLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDK-------------NQHLENSLSAETRIKLDLFS  622 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHH
Confidence            999999754   45677766666665    66889999988876552             33344    45455578888


Q ss_pred             HHHHHHHHHHHHHHHHhhhccc
Q psy2772         556 DLQRQRQELSAQVKQLTEKSNS  577 (746)
Q Consensus       556 gLsrQRqeLs~qVrqLt~~s~~  577 (746)
                      .|-.-|.+|..+-.+|..+-..
T Consensus       623 aLg~akrq~ei~~~~~~~~d~e  644 (697)
T PF09726_consen  623 ALGDAKRQLEIAQGQLRKKDKE  644 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888877777755443

; GO: 0016021 integral to membrane

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=94.54  E-value=2.6  Score=41.76  Aligned_cols=92  Identities=17%  Similarity=0.247  Sum_probs=64.9

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhH-hhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2772         426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRH-KMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA  504 (746)
Q Consensus       426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~q-qME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twa  504 (746)
                      -|...+ +-++...|+.++.+++.|..-++.+=. .+..   +....+..+.+...++..+..+|..+.+.-+++++.=+
T Consensus        16 ~C~~~~-L~~~~~~l~~~~~~~~~l~~~i~~~l~~~~~~---~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~   91 (302)
T PF10186_consen   16 NCVNNR-LLELRSELQQLKEENEELRRRIEEILESDSNG---QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRE   91 (302)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666 666777777777777776654333221 1212   56677777778888888888888888888888888887


Q ss_pred             HHhhhHHHHHHHHHHHH
Q psy2772         505 ANARLESELVVLRQKLQ  521 (746)
Q Consensus       505 EyaRLE~EV~~LRqkLQ  521 (746)
                      ....+-..+...++.|.
T Consensus        92 ~l~~~~~~l~~~~~~l~  108 (302)
T PF10186_consen   92 RLEELRESLEQRRSRLS  108 (302)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777777776

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.50  E-value=2.4  Score=48.71  Aligned_cols=140  Identities=17%  Similarity=0.115  Sum_probs=77.9

Q ss_pred             cccCcccccceeEEEEEeeeccccccccccccccccccccccCCCCccee--------eecchhh----------hhhhh
Q psy2772         365 PRKQHLFLDSVIWYISLLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRI--------RIGVMIH----------AISRD  426 (746)
Q Consensus       365 de~gl~wdeAv~wdIt~aYTNHTILpEALEkWpv~~~l~irvrp~~p~ri--------~e~d~d~----------klSr~  426 (746)
                      ..+-|+=+++  =+.-|-|++|.+.-       +-+--|...++-+|+-+        ..+||-+          +|...
T Consensus        78 ~ayyLPk~~~--e~YqfcYv~~~g~V-------~G~S~pFqf~~~~p~eeLvtle~e~~~~DmLvV~~ka~~lQ~qlE~~  148 (546)
T PF07888_consen   78 QAYYLPKDDD--EFYQFCYVDQKGEV-------RGASTPFQFRAPKPLEELVTLEDEDGNSDMLVVTTKAQLLQNQLEEC  148 (546)
T ss_pred             CcccCCCCCC--CeEEEEEECCCccE-------EEecCCcccCCCCccccceeecccCCCcceEEEehhHHHHHHHHHHH
Confidence            3556666556  24558999998652       33556777777677543        1234322          22211


Q ss_pred             -hh---hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772         427 -QI---ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEET  502 (746)
Q Consensus       427 -ce---~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t  502 (746)
                       .+   +-+....++..+..|+...+.|+..|...+.+          .+++..|..-|....-.+..+......++++.
T Consensus       149 qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee----------~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~  218 (546)
T PF07888_consen  149 QKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEE----------MEQLKQQQKELTESSEELKEERESLKEQLAEA  218 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             01   11222233333444444444444444444443          44555556666666666666666667777777


Q ss_pred             HHHHhhhHHHHHHHHHHHHHH
Q psy2772         503 VAANARLESELVVLRQKLQWS  523 (746)
Q Consensus       503 waEyaRLE~EV~~LRqkLQaQ  523 (746)
                      ......||.++..|.+++.++
T Consensus       219 ~~ri~~LEedi~~l~qk~~E~  239 (546)
T PF07888_consen  219 RQRIRELEEDIKTLTQKEKEQ  239 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            777788888888888777543

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.49  E-value=0.72  Score=55.74  Aligned_cols=41  Identities=22%  Similarity=0.445  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy2772         541 AALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQ  581 (746)
Q Consensus       541 AqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~q  581 (746)
                      ..++++++.+.+-++.+...+.+|..+++.+...-+.+.++
T Consensus       866 ~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~  906 (1163)
T COG1196         866 EELEAEKEELEDELKELEEEKEELEEELRELESELAELKEE  906 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567777777777777777777777777766554444433

>KOG0161|consensus

Probab=94.37  E-value=0.83  Score=58.44  Aligned_cols=92  Identities=18%  Similarity=0.236  Sum_probs=56.6

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHH
Q psy2772         432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLES  511 (746)
Q Consensus       432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~  511 (746)
                      .+.++|..++.++.+|..+|.-|.-|.-+|..-.   ....|+-+-.+.||+-+-..=..|..--.+....-...++||+
T Consensus       944 ~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~---e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~ 1020 (1930)
T KOG0161|consen  944 QLEELELTLQKLELEKNAAENKLKNLEEEINSLD---ENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQ 1020 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444555555555555555555555522   3355555556666666655555566566666777777889999


Q ss_pred             HHHHHHHHHHHHHhh
Q psy2772         512 ELVVLRQKLQWSRRE  526 (746)
Q Consensus       512 EV~~LRqkLQaQr~~  526 (746)
                      .|..|...|..+...
T Consensus      1021 ~l~~le~~le~e~~~ 1035 (1930)
T KOG0161|consen 1021 QLDDLEVTLEREKRI 1035 (1930)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999988888766543

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=94.26  E-value=0.64  Score=56.14  Aligned_cols=97  Identities=23%  Similarity=0.167  Sum_probs=56.4

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772         425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVH--ASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEET  502 (746)
Q Consensus       425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~--dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t  502 (746)
                      .+...+.++.+++..|..|++++++.+..+.-.... ....  ---.....+..|...++++|...+.++.....+|+++
T Consensus       187 nl~~~~~~~~el~~~l~~L~~q~~~a~~y~~l~~e~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~  265 (1163)
T COG1196         187 NLERLEDLLEELEKQLEKLERQAEKAERYQELKAEL-RELELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEA  265 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344467778888888888888887777655433322 2111  1123344455556666666666666666666666666


Q ss_pred             HHHHhhhHHHHHHHHHHHHH
Q psy2772         503 VAANARLESELVVLRQKLQW  522 (746)
Q Consensus       503 waEyaRLE~EV~~LRqkLQa  522 (746)
                      -.+...|+.++..++..+..
T Consensus       266 ~~~i~~~~~~~~e~~~~~~~  285 (1163)
T COG1196         266 EKEIEELKSELEELREELEE  285 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666665555555554443

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=94.17  E-value=2.2  Score=44.98  Aligned_cols=43  Identities=26%  Similarity=0.350  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772         479 RLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ  521 (746)
Q Consensus       479 rlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ  521 (746)
                      ..|++|+..+...++.+..-+....+.++.|+.++..||+...
T Consensus       159 ~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~  201 (325)
T PF08317_consen  159 ELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLVE  201 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444445555555555555555555555555555555554433

>PHA02562 46 endonuclease subunit; Provisional

Probab=94.12  E-value=1.4  Score=47.85  Aligned_cols=113  Identities=14%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHH
Q psy2772         435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELV  514 (746)
Q Consensus       435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~  514 (746)
                      .+.+.+..|+.+++.|+..+..+...++.+...-..+++++..-..+..+|......+.....++|+.-+++..+|.++.
T Consensus       303 ~l~d~i~~l~~~l~~l~~~i~~~~~~~~~~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~  382 (562)
T PHA02562        303 KIKDKLKELQHSLEKLDTAIDELEEIMDEFNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELA  382 (562)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHH
Confidence            35557777888888888888877777776555555556666666666666666666666666777777777777777777


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy2772         515 VLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQ  560 (746)
Q Consensus       515 ~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQ  560 (746)
                      .|.++|.+=..             +.+.+++|..+.+.+-.-|...
T Consensus       383 ~l~~~l~~~~~-------------~~~~~~ke~~~~~~i~~~~~~~  415 (562)
T PHA02562        383 KLQDELDKIVK-------------TKSELVKEKYHRGIVTDLLKDS  415 (562)
T ss_pred             HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHhh
Confidence            76666664332             5556677766655443333443

>PRK02224 chromosome segregation protein; Provisional

Probab=94.08  E-value=2.7  Score=48.54  Aligned_cols=97  Identities=14%  Similarity=0.012  Sum_probs=52.5

Q ss_pred             chhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2772         418 VMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK  497 (746)
Q Consensus       418 d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk  497 (746)
                      +....-.+..+.-+-+..++.+|..+++.++.|+.-+..+...+....+   ...++..++..|+..+..++.+|+...+
T Consensus       259 ~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~l~~~l~~~~~---~~~~l~~~~~~l~~k~~el~~~l~~~~~  335 (880)
T PRK02224        259 EIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA---DAEAVEARREELEDRDEELRDRLEECRV  335 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444445666677777777777777777777777666632   2344444555555555555555544444


Q ss_pred             HHHH-------HHHHHhhhHHHHHHHH
Q psy2772         498 KLEE-------TVAANARLESELVVLR  517 (746)
Q Consensus       498 ELE~-------twaEyaRLE~EV~~LR  517 (746)
                      ++.+       .=..+..||.++..++
T Consensus       336 ~l~~~~~~~e~~~~~~~~le~~~~~l~  362 (880)
T PRK02224        336 AAQAHNEEAESLREDADDLEERAEELR  362 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443       3344444444444433

>TIGR00606 rad50 rad50

Probab=94.04  E-value=1.1  Score=54.84  Aligned_cols=146  Identities=12%  Similarity=0.135  Sum_probs=70.7

Q ss_pred             hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh-----------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2772         429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASP-----------AEVERYRRQQRLLERELSRVRSILAHNSK  497 (746)
Q Consensus       429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP-----------a~~EKi~~QQrlLE~eLsrVRaeLSrnSk  497 (746)
                      .+.++.+++.++..+...++.++..+.......+....--           ..+..+..+...|+.+|.....+|...-.
T Consensus       693 ~~~f~~~L~~~~~~~p~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~l~~~eip~l~~~l~~le~~l~~~~~~le~~~~  772 (1311)
T TIGR00606       693 LQEFISDLQSKLRLAPDKLKSTESELKKKEKRRDEMLGLAPGRQSIIDLKEKEIPELRNKLQKVNRDIQRLKNDIEEQET  772 (1311)
T ss_pred             HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666666666665555555555554444433333221           12222333334444444444444444433


Q ss_pred             HHHHHHHH-------------HhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         498 KLEETVAA-------------NARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQEL  564 (746)
Q Consensus       498 ELE~twaE-------------yaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeL  564 (746)
                      +|+..-.+             ..|+..++.-|+..|.........    .....+...|+.|+..++.-+..|.+....+
T Consensus       773 ~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~----~~~~~s~~ele~ei~~~~~el~~l~~~~e~l  848 (1311)
T TIGR00606       773 LLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQG----SDLDRTVQQVNQEKQEKQHELDTVVSKIELN  848 (1311)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33332222             244455555555555543322111    1112355778888888888888874444444


Q ss_pred             HHHHHHHhhhcccc
Q psy2772         565 SAQVKQLTEKSNSL  578 (746)
Q Consensus       565 s~qVrqLt~~s~~l  578 (746)
                      .....++.+.-+.|
T Consensus       849 ~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       849 RKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHH
Confidence            44444444444444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00787 Spc7 Spc7 kinetochore protein

Probab=93.87  E-value=1.2  Score=47.49  Aligned_cols=148  Identities=18%  Similarity=0.150  Sum_probs=90.0

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHh---HhhhccCCC-hHHHHHHHHHHHHH----HHHHHHHHHHHHhhh
Q psy2772         425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLR---HKMHGVHAS-PAEVERYRRQQRLL----ERELSRVRSILAHNS  496 (746)
Q Consensus       425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~---qqME~~~dq-Pa~~EKi~~QQrlL----E~eLsrVRaeLSrnS  496 (746)
                      |+.-.+-|...|+..+..|+.|+..|.+.+..+.   .++....+. -..+..++..+..+    +++|.++|..|+..-
T Consensus       138 R~kllegLk~~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~  217 (312)
T smart00787      138 RMKLLEGLKEGLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLL  217 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHH
Confidence            3444555666667777777777776665444333   223222222 23333444444444    347888888888888


Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy2772         497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSN  576 (746)
Q Consensus       497 kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~  576 (746)
                      .+++...++..-++.++..++.++.+--+             .++.++.++.-.+.+....   |.==..-|..|.++.+
T Consensus       218 ~ei~~~~~~l~e~~~~l~~l~~~I~~~~~-------------~k~e~~~~I~~ae~~~~~~---r~~t~~Ei~~Lk~~~~  281 (312)
T smart00787      218 QEIMIKVKKLEELEEELQELESKIEDLTN-------------KKSELNTEIAEAEKKLEQC---RGFTFKEIEKLKEQLK  281 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHH
Confidence            88888888888888888888888875432             5666777766666654432   3223345666777777


Q ss_pred             cccccccCCCcc
Q psy2772         577 SLSQQIRPGPTG  588 (746)
Q Consensus       577 ~l~~qi~~~~~~  588 (746)
                      .|+.+.+=..++
T Consensus       282 ~Le~l~g~~~~~  293 (312)
T smart00787      282 LLQSLTGWKITK  293 (312)
T ss_pred             HHHHHhCCeeEe
Confidence            777655444443

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=93.86  E-value=1.4  Score=45.55  Aligned_cols=86  Identities=21%  Similarity=0.264  Sum_probs=39.3

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHH
Q psy2772         435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASP-AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESEL  513 (746)
Q Consensus       435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP-a~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV  513 (746)
                      .+...+..|+.+.+.++.-+..+.++++....+- .+-+.+...+.+++++++.-+..+ ..-.++.++-.++.+++.++
T Consensus       141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~~g~is~~~~~-~~~~~~~~~~~~l~~~~~~l  219 (423)
T TIGR01843       141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELL-ELERERAEAQGELGRLEAEL  219 (423)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence            3344444444445444444444444444444332 222345556666654443322222 22334444445555555555


Q ss_pred             HHHHHHHH
Q psy2772         514 VVLRQKLQ  521 (746)
Q Consensus       514 ~~LRqkLQ  521 (746)
                      ..++..+.
T Consensus       220 ~~~~~~l~  227 (423)
T TIGR01843       220 EVLKRQID  227 (423)
T ss_pred             HHHHHHHH
Confidence            55554444

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=93.74  E-value=2.6  Score=47.89  Aligned_cols=139  Identities=15%  Similarity=0.128  Sum_probs=96.1

Q ss_pred             hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772         429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANAR  508 (746)
Q Consensus       429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR  508 (746)
                      .+.+.......+..|..+...||.-|+.+.++|....+ +..++++...-..+++++..+.+++.....++++...+..+
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~~~~~-~e~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~  460 (650)
T TIGR03185       382 IQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPS-EEQIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEA  460 (650)
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455455567888889999999999999999988774 36888888888889999999999999999999988888888


Q ss_pred             hHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhcccccccccCC
Q psy2772         509 LESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQ-VKQLTEKSNSLSQQIRPG  585 (746)
Q Consensus       509 LE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~q-VrqLt~~s~~l~~qi~~~  585 (746)
                      ++.++..++.+......                 +++-+...+.+..-|..-+..|... +.+|...-+...+++-++
T Consensus       461 ~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~l~~~~~~l~~~~~~~le~~~~~~f~~l~~k  521 (650)
T TIGR03185       461 LRKTLDEKTKQKINAFE-----------------LERAITIADKAKKTLKEFREKLLERKLQQLEEEITKSFKKLMRK  521 (650)
T ss_pred             HHHHHHHHHHHHHhhhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            88888766655553321                 3333333444444444545555554 344555545555555443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.55  E-value=3  Score=42.44  Aligned_cols=115  Identities=26%  Similarity=0.296  Sum_probs=78.8

Q ss_pred             hhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHH
Q psy2772         438 NICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLR  517 (746)
Q Consensus       438 ~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LR  517 (746)
                      ++++.|.+.-..|+.=+..++...      ...+..   -...++.+|...|.+|...+++-.+.-.+.+.|..++..+|
T Consensus        18 ekVr~LE~~N~~Le~~i~~~~~~~------~~~~~~---~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r   88 (312)
T PF00038_consen   18 EKVRFLEQENKRLESEIEELREKK------GEEVSR---IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLR   88 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHH---------------HH---HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhcc------cccCcc---cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHH
Confidence            456677777766666555544432      111111   25567788888888888888888888888888888888888


Q ss_pred             HHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772         518 QKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEK  574 (746)
Q Consensus       518 qkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~  574 (746)
                      .++.+...             ....|+.|+..+...+......|.+|.+++..|.+.
T Consensus        89 ~k~e~e~~-------------~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eE  132 (312)
T PF00038_consen   89 RKYEEELA-------------ERKDLEEELESLRKDLDEETLARVDLENQIQSLKEE  132 (312)
T ss_dssp             HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-------------HHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHH
Confidence            88886654             344578888888888888888888888888877753

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK02224 chromosome segregation protein; Provisional

Probab=93.54  E-value=2.2  Score=49.35  Aligned_cols=83  Identities=10%  Similarity=0.019  Sum_probs=38.1

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHH
Q psy2772         436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVV  515 (746)
Q Consensus       436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~  515 (746)
                      ++..+..+++.++.|++-+..+...+..+...-..++.+..+-..+++.+......+.....++.+.-..+.+|+.++..
T Consensus       218 l~~~i~~~~~~~~~l~~~l~~l~~~~~el~~~~~~l~~l~~~~~~l~~~i~~~e~~~~~l~~~i~~~~~~~~~le~e~~~  297 (880)
T PRK02224        218 LDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDD  297 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444334333333334444445555555555555555544455555555555555544444


Q ss_pred             HHH
Q psy2772         516 LRQ  518 (746)
Q Consensus       516 LRq  518 (746)
                      |..
T Consensus       298 l~~  300 (880)
T PRK02224        298 LLA  300 (880)
T ss_pred             HHH
Confidence            333

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.52  E-value=2.1  Score=40.98  Aligned_cols=41  Identities=29%  Similarity=0.407  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772         484 ELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR  524 (746)
Q Consensus       484 eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr  524 (746)
                      ++...+.++...-.+|...+..|..++.++..|++.++..+
T Consensus       117 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~  157 (191)
T PF04156_consen  117 DLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSR  157 (191)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333455666667777888888888888888886666554

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=93.51  E-value=2.1  Score=44.64  Aligned_cols=78  Identities=22%  Similarity=0.330  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772         480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR  559 (746)
Q Consensus       480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr  559 (746)
                      -|+.|+.-.-..+.....+|.+.-.++.+|+.+...|+..+..+..+-.         -..+.++.|+.-|.+.+-+++.
T Consensus        93 aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~---------e~~~~~e~e~~~i~e~~~~~~~  163 (239)
T COG1579          93 ALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLA---------EAEARLEEEVAEIREEGQELSS  163 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333344444444455555555566666666666666665553211         1333345555555555555555


Q ss_pred             HHHHHHH
Q psy2772         560 QRQELSA  566 (746)
Q Consensus       560 QRqeLs~  566 (746)
                      +|.+|..
T Consensus       164 ~~~~L~~  170 (239)
T COG1579         164 KREELKE  170 (239)
T ss_pred             HHHHHHH
Confidence            5555543

>KOG1853|consensus

Probab=93.48  E-value=7.5  Score=41.79  Aligned_cols=122  Identities=19%  Similarity=0.184  Sum_probs=77.3

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCCh--HHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHH
Q psy2772         432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASP--AEVERYRRQQRLLERELSRVRSI---LAHNSKKLEETVAAN  506 (746)
Q Consensus       432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqP--a~~EKi~~QQrlLE~eLsrVRae---LSrnSkELE~twaEy  506 (746)
                      |-.++|..|++|+..--+||+--..|+-+.+..++--  ++++- .+|-..|+.||++.|+.   |-+-..|||++-...
T Consensus        46 ~EaelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~-y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdL  124 (333)
T KOG1853|consen   46 IEAELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQF-YQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDL  124 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence            3456677777777777777776666666655544332  22332 24557899999998875   444567888886666


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         507 ARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQE  563 (746)
Q Consensus       507 aRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqe  563 (746)
                      .|-++--..+-..+...+ |++-        -..|+||+||--=|-+++-+||-|.|
T Consensus       125 ErakRati~sleDfeqrL-nqAI--------ErnAfLESELdEke~llesvqRLkdE  172 (333)
T KOG1853|consen  125 ERAKRATIYSLEDFEQRL-NQAI--------ERNAFLESELDEKEVLLESVQRLKDE  172 (333)
T ss_pred             HHhhhhhhhhHHHHHHHH-HHHH--------HHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            655554333333333222 2221        24678999999999999999887766

>PRK03918 chromosome segregation protein; Provisional

Probab=93.39  E-value=4.5  Score=46.54  Aligned_cols=76  Identities=26%  Similarity=0.250  Sum_probs=33.9

Q ss_pred             hhhhhhHHHHHHHHHHHhHhhhccC--CChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHH
Q psy2772         441 SVQGQAKEMLENALGSLRHKMHGVH--ASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVL  516 (746)
Q Consensus       441 q~Lk~DKD~LEsAL~~L~qqME~~~--dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~L  516 (746)
                      ..++.+.+.|+.-+..+..+++...  -++...+.++..-.-|++++..++..+...-+++++...+...++.++..+
T Consensus       629 ~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~~~~~~~l  706 (880)
T PRK03918        629 DKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEER  706 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333334444444444444332  334444444444445555555444444444444444444444444444433

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.38  E-value=5.3  Score=40.73  Aligned_cols=83  Identities=30%  Similarity=0.324  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHH
Q psy2772         474 YRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQAL  553 (746)
Q Consensus       474 i~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdV  553 (746)
                      -.....-+..|+...|..|....++|+..=+.++.||..|..|...+...+....         ..-..++.||..++.-
T Consensus       207 ~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~---------~~i~~le~el~~l~~~  277 (312)
T PF00038_consen  207 SSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQ---------AEIAELEEELAELREE  277 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred             cccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHH---------HhhhccchhHHHHHHH
Confidence            3444566788888888888888999998889999999999999988887775422         2556678888777777


Q ss_pred             HHHHHHHHHHHH
Q psy2772         554 VGDLQRQRQELS  565 (746)
Q Consensus       554 vggLsrQRqeLs  565 (746)
                      |....+.-++|-
T Consensus       278 ~~~~~~ey~~Ll  289 (312)
T PF00038_consen  278 MARQLREYQELL  289 (312)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            766666666654

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=93.20  E-value=5.5  Score=38.13  Aligned_cols=42  Identities=24%  Similarity=0.190  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772         483 RELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR  524 (746)
Q Consensus       483 ~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr  524 (746)
                      .++......+...-...++.-.+...|.+++..++..++..+
T Consensus       123 ~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~  164 (191)
T PF04156_consen  123 ELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR  164 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444444455555555555443

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PRK09039 hypothetical protein; Validated

Probab=93.10  E-value=2.7  Score=45.04  Aligned_cols=34  Identities=24%  Similarity=0.391  Sum_probs=16.4

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772         539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLT  572 (746)
Q Consensus       539 ekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt  572 (746)
                      +-+.|++-|-++|..+....++-.+...++..|.
T Consensus       145 qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~  178 (343)
T PRK09039        145 QIAALRRQLAALEAALDASEKRDRESQAKIADLG  178 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444455555555555555444444444444

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=92.97  E-value=5.2  Score=42.60  Aligned_cols=69  Identities=10%  Similarity=0.014  Sum_probs=43.0

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772         426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN  495 (746)
Q Consensus       426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn  495 (746)
                      .....+...-++..|..++++-+..|.+|...+++-.-..-+ ...+-...|-..|+.+|..+++++...
T Consensus       166 ~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~-~~~~~~~~~l~~l~~~l~~~~~~~~~~  234 (444)
T TIGR03017       166 VEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD-ERLDVERARLNELSAQLVAAQAQVMDA  234 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC-cccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            444556677888889999999999999999988883222110 111222234455666666666665443

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>KOG0971|consensus

Probab=92.82  E-value=1.9  Score=52.19  Aligned_cols=144  Identities=17%  Similarity=0.256  Sum_probs=85.7

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q psy2772         430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL  509 (746)
Q Consensus       430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRL  509 (746)
                      .|||+.+-..-..|++.+...+.|++.-.+-++--.|-...+|-     -.|+.|+.--|++==+  -|+|-.-..++.|
T Consensus       272 Skim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEm-----aTldKEmAEERaesLQ--~eve~lkEr~del  344 (1243)
T KOG0971|consen  272 SKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEM-----ATLDKEMAEERAESLQ--QEVEALKERVDEL  344 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence            45555555555556666666666655544433322222222222     1344444444444322  3556666677777


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCC------------------------C---CcchHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         510 ESELVVLRQKLQWSRREVCNGTASLS------------------------N---GPSVAALEAELRRVQALVGDLQRQRQ  562 (746)
Q Consensus       510 E~EV~~LRqkLQaQr~~~~~~~~~~~------------------------~---~qekAqLekELwRIQdVvggLsrQRq  562 (746)
                      |-||+.||..++++.-    +.....                        +   -+...-+.+||.+-..=+.-|.++|.
T Consensus       345 etdlEILKaEmeekG~----~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE  420 (1243)
T KOG0971|consen  345 ETDLEILKAEMEEKGS----DGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKE  420 (1243)
T ss_pred             HHHHHHHHHHHHhcCC----CCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            7788887777775531    110000                        0   13444567888888888899999999


Q ss_pred             HHHHHHHHHhhhcccccccccC
Q psy2772         563 ELSAQVKQLTEKSNSLSQQIRP  584 (746)
Q Consensus       563 eLs~qVrqLt~~s~~l~~qi~~  584 (746)
                      -|+.+++++-..-..|++|++.
T Consensus       421 ~Lsr~~d~aEs~iadlkEQVDA  442 (1243)
T KOG0971|consen  421 RLSRELDQAESTIADLKEQVDA  442 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888888888764

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=92.77  E-value=5.3  Score=48.86  Aligned_cols=92  Identities=21%  Similarity=0.252  Sum_probs=67.2

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHH-
Q psy2772         430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS---KKLEETVAA-  505 (746)
Q Consensus       430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~twaE-  505 (746)
                      +.|-+.++..-+..++++..||.++.   +++..-+-+|..+.+++.+-..|+.+|.+|...=+.+.   +-|+..|.. 
T Consensus       735 ~~i~~~i~~~~~~~~~~~~~le~~~~---~eL~~~GvD~~~I~~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~  811 (1201)
T PF12128_consen  735 EQIKQEIAAAKQEAKEQLKELEQQYN---QELAGKGVDPERIQQLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKV  811 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Confidence            34444455555555566666666543   66777889999999999999999999999987776665   778888986 


Q ss_pred             ------HhhhHHHHHHHHHHHHHHH
Q psy2772         506 ------NARLESELVVLRQKLQWSR  524 (746)
Q Consensus       506 ------yaRLE~EV~~LRqkLQaQr  524 (746)
                            ...|+.++..++++++.-.
T Consensus       812 ~~~~~~~~~l~~~~~~~~~~~~~l~  836 (1201)
T PF12128_consen  812 DELREEKPELEEQLRDLEQELQELE  836 (1201)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHH
Confidence                  6677777777766655433

>PRK04863 mukB cell division protein MukB; Provisional

Probab=92.31  E-value=2.3  Score=53.43  Aligned_cols=31  Identities=10%  Similarity=-0.090  Sum_probs=19.7

Q ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHH
Q psy2772         427 QIASKLHSRGRNICSVQGQAKEMLENALGSL  457 (746)
Q Consensus       427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L  457 (746)
                      -+.+.++.+++.++..|++++++.+.-+...
T Consensus       310 ~rI~diL~ELe~rL~kLEkQaEkA~kyleL~  340 (1486)
T PRK04863        310 VEMARELAELNEAESDLEQDYQAASDHLNLV  340 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345566777777777777777766655443

>PF14644 DUF4456: Domain of unknown function (DUF4456)

Probab=92.26  E-value=4.5  Score=40.38  Aligned_cols=114  Identities=16%  Similarity=0.184  Sum_probs=79.8

Q ss_pred             HHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh---------HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772         451 ENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS---------KKLEETVAANARLESELVVLRQKLQ  521 (746)
Q Consensus       451 EsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS---------kELE~twaEyaRLE~EV~~LRqkLQ  521 (746)
                      ...|...++|++.|.  -.+...++.|=..|++.|..|...+-...         ..|.+.+.++.+..+.+..+|++=.
T Consensus        35 ~~~l~~~~~qa~~y~--~~~~~elR~qv~~l~~~l~~v~~lv~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~k~~h~  112 (208)
T PF14644_consen   35 VQKLQSYQEQADEYH--NSCLQELRNQVERLEELLPKVPELVFESLLKRHWQKLCEAMKAIQEEFEQQQKQWEQQKDQHE  112 (208)
T ss_pred             HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444445554  24677788888888999998888776643         4566667777777777777777766


Q ss_pred             HHHhhhccCCCCCCCCcchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772         522 WSRREVCNGTASLSNGPSVAAL----EAELRRVQALVGDLQRQRQELSAQVKQLT  572 (746)
Q Consensus       522 aQr~~~~~~~~~~~~~qekAqL----ekELwRIQdVvggLsrQRqeLs~qVrqLt  572 (746)
                      -+++      +.+..++-..+|    ++|=.|..+.+.+++..++.|-..+++-.
T Consensus       113 ~~Lr------P~LghP~~~~eL~~L~~~E~~R~~~~~~~I~~~~~~l~~~~~~~a  161 (208)
T PF14644_consen  113 QQLR------PNLGHPDNRQELESLCEREEKRQKEHQEAIQNFWEKLLEEVRKEA  161 (208)
T ss_pred             HhCC------CcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5553      334455555555    78999999999999999999887776544

>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional

Probab=91.96  E-value=5.7  Score=46.04  Aligned_cols=133  Identities=17%  Similarity=0.092  Sum_probs=81.1

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------H
Q psy2772         426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK-------K  498 (746)
Q Consensus       426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk-------E  498 (746)
                      .....+-+.-++++|..|+++-++.|.+|...+++=.-.. --...+.+..|-..|+.+|...+.+++..+.       +
T Consensus       262 ~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d-~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~~~~~hP~  340 (726)
T PRK09841        262 AAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVD-LNLEAKAVLEQIVNVDNQLNELTFREAEISQLYKKDHPT  340 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCch
Confidence            4456677788888899999999999999988888722221 1123333334444455555555544433332       2


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         499 LEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK  569 (746)
Q Consensus       499 LE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVr  569 (746)
                      +.+.=+..+.|++++..+++.+...-.          ...+-..|++|..--+++-..|-.+++|++.+..
T Consensus       341 v~~l~~~~~~L~~~~~~l~~~~~~~p~----------~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a  401 (726)
T PRK09841        341 YRALLEKRQTLEQERKRLNKRVSAMPS----------TQQEVLRLSRDVEAGRAVYLQLLNRQQELSISKS  401 (726)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            222333345566666555555442211          2245567888888889999999999999866643

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=91.95  E-value=8.6  Score=35.86  Aligned_cols=121  Identities=23%  Similarity=0.225  Sum_probs=72.9

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHhhhH
Q psy2772         434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRV---RSILAHNSKKLEETVAANARLE  510 (746)
Q Consensus       434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrV---RaeLSrnSkELE~twaEyaRLE  510 (746)
                      ..++..++.++...+..+..+..++..|+.      ..+.+..=|.-.|+||+.-   -..|+.+-+++...=.+...|.
T Consensus         6 ~~l~~e~~~~~~~~~~~~~~~~~~~~dl~~------q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~   79 (132)
T PF07926_consen    6 SSLQSELQRLKEQEEDAEEQLQSLREDLES------QAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELK   79 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666777777777777777776666653      3344555566678887642   2233333344444445555555


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         511 SELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK  569 (746)
Q Consensus       511 ~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVr  569 (746)
                      .++...+..|......         -..++..|++|+.-++.=+.+|..|-.=|=.|+.
T Consensus        80 ~~~~~a~~~l~~~e~s---------w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE  129 (132)
T PF07926_consen   80 AEAESAKAELEESEAS---------WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLE  129 (132)
T ss_pred             HHHHHHHHHHHHHHHh---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555444321         1247788888888888777777777777666654

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>KOG0971|consensus

Probab=91.90  E-value=3.8  Score=49.78  Aligned_cols=80  Identities=20%  Similarity=0.236  Sum_probs=59.2

Q ss_pred             hhhhhhhhhHHHHHHHHHHHhHhhhccCCC-----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHH
Q psy2772         438 NICSVQGQAKEMLENALGSLRHKMHGVHAS-----PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESE  512 (746)
Q Consensus       438 ~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq-----Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~E  512 (746)
                      ..+-.||+--|.||.=|+-|+.+|+--++.     --..-.+.+|-.-|-+-|+|.|-..|+....--++..|..++-.|
T Consensus       332 ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE  411 (1243)
T KOG0971|consen  332 QEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSE  411 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhH
Confidence            446678888999999999999999866543     245667888888899999999999887765555555555555555


Q ss_pred             HHHHH
Q psy2772         513 LVVLR  517 (746)
Q Consensus       513 V~~LR  517 (746)
                      +..||
T Consensus       412 ~~eL~  416 (1243)
T KOG0971|consen  412 LEELR  416 (1243)
T ss_pred             HHHHH
Confidence            55544

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=91.82  E-value=5.9  Score=43.01  Aligned_cols=69  Identities=17%  Similarity=0.122  Sum_probs=44.3

Q ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2772         427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK  497 (746)
Q Consensus       427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk  497 (746)
                      .......+-++..+..++++-++.|.+|...+++=.-  ..|.....+..+-..|+.+|..++++++....
T Consensus       157 ~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~--~~~~~~~~~~~~l~~l~~~l~~~~~~l~~~~a  225 (498)
T TIGR03007       157 QDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGG--ILPDQEGDYYSEISEAQEELEAARLELNEAIA  225 (498)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcc--cCccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445567777888888888888888888888766221  13444444555566666666666666555443

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>PRK11519 tyrosine kinase; Provisional

Probab=91.69  E-value=6.7  Score=45.39  Aligned_cols=133  Identities=17%  Similarity=0.124  Sum_probs=83.2

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------H
Q psy2772         426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK-------K  498 (746)
Q Consensus       426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk-------E  498 (746)
                      .....+.+.-++.++..|+++-+..|.+|...+++ +..-+-....+....|-..|+.+|..+..+++..++       .
T Consensus       262 ~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~-~~~vd~~~ea~~~l~~~~~l~~ql~~l~~~~~~l~~~y~~~hP~  340 (719)
T PRK11519        262 SEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQD-KDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLYTKEHPA  340 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcH
Confidence            34455677888889999999999999999888877 222222344555555556666666666555554432       2


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         499 LEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVK  569 (746)
Q Consensus       499 LE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVr  569 (746)
                      |...-+..+.|++++..++..+..--          ...++-..|++|..--+.+-..|-.+++|++.+..
T Consensus       341 v~~l~~~~~~L~~~~~~l~~~~~~lp----------~~e~~~~~L~Re~~~~~~lY~~lL~r~~e~~i~~a  401 (719)
T PRK11519        341 YRTLLEKRKALEDEKAKLNGRVTAMP----------KTQQEIVRLTRDVESGQQVYMQLLNKQQELKITEA  401 (719)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcc----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            33333334445555555554443211          01235567899999999999999999999865543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=91.63  E-value=7.3  Score=36.51  Aligned_cols=113  Identities=23%  Similarity=0.244  Sum_probs=70.3

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772         431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE  510 (746)
Q Consensus       431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE  510 (746)
                      .|+.-+-+.|+.-.+|.+..|...+.++.--......-..++++..|-..+|+++........+..+++......+..+-
T Consensus        35 ~vin~i~~Ll~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~k  114 (151)
T PF11559_consen   35 RVINCIYDLLQQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEK  114 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555566666666666665555554433333334456666666777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772         511 SELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR  559 (746)
Q Consensus       511 ~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr  559 (746)
                      .||.-|+..+|.                .+++.+-|++|-+-=+..|+.
T Consensus       115 ee~~klk~~~~~----------------~~tq~~~e~rkke~E~~kLk~  147 (151)
T PF11559_consen  115 EELQKLKNQLQQ----------------RKTQYEHELRKKEREIEKLKE  147 (151)
T ss_pred             HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHH
Confidence            777666666662                334466666666666655544

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PRK04863 mukB cell division protein MukB; Provisional

Probab=91.41  E-value=4.2  Score=51.34  Aligned_cols=86  Identities=10%  Similarity=0.072  Sum_probs=48.5

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2772         424 SRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVE---RYRRQQRLLERELSRVRSILAHNSKKLE  500 (746)
Q Consensus       424 Sr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~E---Ki~~QQrlLE~eLsrVRaeLSrnSkELE  500 (746)
                      .+..+.-|.|.+-+.++..+.+.-+.|+.-|..|..+.+.+..--...+   ++.++...++.+|.....++.....+++
T Consensus       293 ~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLe  372 (1486)
T PRK04863        293 RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVE  372 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5556666667777777777777777777777777777655553322222   2334444455555555555555555555


Q ss_pred             HHHHHHhhh
Q psy2772         501 ETVAANARL  509 (746)
Q Consensus       501 ~twaEyaRL  509 (746)
                      +...+...+
T Consensus       373 eleeeleel  381 (1486)
T PRK04863        373 EADEQQEEN  381 (1486)
T ss_pred             HHHHHHHHH
Confidence            544443333

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=91.30  E-value=3.5  Score=47.29  Aligned_cols=62  Identities=6%  Similarity=0.032  Sum_probs=39.0

Q ss_pred             HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         504 AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQV  568 (746)
Q Consensus       504 aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qV  568 (746)
                      ++|+.+.+.+..|+..+.........   ......+-..|++|..-.+++-..|-.+++|...+.
T Consensus       345 ~~~~~a~~~~~~L~~~l~~~~~~~~~---~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~  406 (754)
T TIGR01005       345 MQADAAQARESQLVSDVNQLKAASAQ---AGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ  406 (754)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh---CcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45555555555555555543322111   001235677889999999999999999999987665

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>KOG3156|consensus

Probab=91.28  E-value=1.5  Score=45.41  Aligned_cols=99  Identities=19%  Similarity=0.255  Sum_probs=72.9

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hH
Q psy2772         419 MIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN-SK  497 (746)
Q Consensus       419 ~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn-Sk  497 (746)
                      --+.+.|.-|+-.+=..+-+.|=.+      +-.++.+....+.+.--..+..+++.|||+   .+|.++|.+|--. =.
T Consensus        46 dt~alvr~LE~~Gf~~kQAETIt~a------iT~v~ndsl~~vsk~~vtkaqq~~v~~QQ~---~~f~kiRsel~S~e~s  116 (220)
T KOG3156|consen   46 DTHALVRSLEAAGFDSKQAETITSA------ITTVLNDSLETVSKELVTKAQQEKVSYQQK---VDFAKIRSELVSIERS  116 (220)
T ss_pred             hHHHHHHHHHHcCCChhhHHHHHHH------HHHHHcccHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence            3456666666555544444444332      334566666666666677888899999986   6899999887433 57


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772         498 KLEETVAANARLESELVVLRQKLQWSRRE  526 (746)
Q Consensus       498 ELE~twaEyaRLE~EV~~LRqkLQaQr~~  526 (746)
                      |+-+.=+||.+|=+||+.+|+.|.++..+
T Consensus       117 EF~~lr~e~EklkndlEk~ks~lr~ei~~  145 (220)
T KOG3156|consen  117 EFANLRAENEKLKNDLEKLKSSLRHEISK  145 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999854

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=91.24  E-value=7.1  Score=40.86  Aligned_cols=51  Identities=22%  Similarity=0.350  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH--HHHHhhhHHHHHHHHHHH
Q psy2772         470 EVERYRRQQRLLERELSRVRSILAHNSKKLEET--VAANARLESELVVLRQKL  520 (746)
Q Consensus       470 ~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t--waEyaRLE~EV~~LRqkL  520 (746)
                      +++.+..|-..+|.+|..+|..+++...+|-.+  =.+|.-|++|+..+++..
T Consensus        53 e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~  105 (239)
T COG1579          53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERI  105 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH
Confidence            445566777888888888888888888777332  256777777776665543

>KOG0161|consensus

Probab=91.22  E-value=2.6  Score=54.18  Aligned_cols=181  Identities=17%  Similarity=0.224  Sum_probs=108.8

Q ss_pred             cccccccccccccccCCCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHh----HhhhccCCC
Q psy2772         392 ACGPWKVHAELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLR----HKMHGVHAS  467 (746)
Q Consensus       392 ALEkWpv~~~l~irvrp~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~----qqME~~~dq  467 (746)
                      .|-.||- +.||.+|+||=.+.+.+--+--|=.-+...+..++..|.....|.+..++++.-+..|-    ++++-..+.
T Consensus       814 ~lr~w~W-~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~a  892 (1930)
T KOG0161|consen  814 KLRTWPW-WRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEA  892 (1930)
T ss_pred             hhccCHH-HHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567886 67899999998877766554444333444444444444444444444444444333333    333334444


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH--------HHhhhccCCCCCCCCcc
Q psy2772         468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW--------SRREVCNGTASLSNGPS  539 (746)
Q Consensus       468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa--------Qr~~~~~~~~~~~~~qe  539 (746)
                      -...++.......||.+|.-...++..+..+....-.++-.+|+++.-|+..++.        +++.+.       ....
T Consensus       893 ee~~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~le~~~~~~~~e~~~l~~~~~~~E~~~~k~~~Ek~~-------~e~~  965 (1930)
T KOG0161|consen  893 EELLERLRAEKQELEKELKELKERLEEEEEKNAELERKKRKLEQEVQELKEQLEELELTLQKLELEKNA-------AENK  965 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHH
Confidence            4445566677778888888777777776655555555555555555555443331        022111       1234


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy2772         540 VAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQ  580 (746)
Q Consensus       540 kAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~  580 (746)
                      -..|+.|+...++..+-|.+.|.+|..+.++|.+..+....
T Consensus       966 ~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~ee 1006 (1930)
T KOG0161|consen  966 LKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEE 1006 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678888888999999999999999999988866554443

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=90.91  E-value=9  Score=44.26  Aligned_cols=48  Identities=25%  Similarity=0.324  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772         474 YRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ  521 (746)
Q Consensus       474 i~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ  521 (746)
                      .+...+.||.++..+....-...++++..-.-...+|+.-..|++.|+
T Consensus       218 ~~~ri~~LEedi~~l~qk~~E~e~~~~~lk~~~~elEq~~~eLk~rLk  265 (546)
T PF07888_consen  218 ARQRIRELEEDIKTLTQKEKEQEKELDKLKELKAELEQLEAELKQRLK  265 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455667777666666644444444444444444444444445554

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=90.77  E-value=6.9  Score=38.06  Aligned_cols=84  Identities=23%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy2772         477 QQRLLERELSRVRSILAHNS-KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG  555 (746)
Q Consensus       477 QQrlLE~eLsrVRaeLSrnS-kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg  555 (746)
                      +..++..++..+|.+|...- .++.+.-+++.+|.+|+..|++.|.+......+.        .+..|.-|=-||.+...
T Consensus        52 ~~~~~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~--------~klD~n~eK~~~r~e~~  123 (177)
T PF07798_consen   52 QEYLFKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAE--------VKLDLNLEKGRIREEQA  123 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHhHHHHHHHHH
Confidence            44555667777888887653 6677888999999999999999999887532221        22222222236666666


Q ss_pred             HHHHHHHHHHHHH
Q psy2772         556 DLQRQRQELSAQV  568 (746)
Q Consensus       556 gLsrQRqeLs~qV  568 (746)
                      .+...-+++.+.+
T Consensus       124 ~~~~ki~e~~~ki  136 (177)
T PF07798_consen  124 KQELKIQELNNKI  136 (177)
T ss_pred             HHHHHHHHHHHHH
Confidence            6655555554443

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=90.71  E-value=3.8  Score=47.48  Aligned_cols=141  Identities=26%  Similarity=0.254  Sum_probs=72.6

Q ss_pred             hhhhhhhhhhhhhhHH-------HHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2772         433 HSRGRNICSVQGQAKE-------MLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA  505 (746)
Q Consensus       433 lqelE~kLq~Lk~DKD-------~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaE  505 (746)
                      ++.+.+.|..|+.+|+       .||+-|.-|+.+|..-. .|.....-..-...|+.++-+.|.++.....+++.-+.+
T Consensus        31 ~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~-~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlqaqv~~  109 (617)
T PF15070_consen   31 MQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPP-PPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQAQVEN  109 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccC-CccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456777778888876       57888888888877654 222111111111233444444444444444333333333


Q ss_pred             Hhhh--------------HHHHHHH------HHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         506 NARL--------------ESELVVL------RQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELS  565 (746)
Q Consensus       506 yaRL--------------E~EV~~L------RqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs  565 (746)
                      |..|              |..|..+      +.+|-+++.+-.. +.|.. ..+..+|+.-|--.|+..--|+...-||-
T Consensus       110 ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~-t~SRA-lsQN~eLK~QL~Elq~~Fv~ltne~~elt  187 (617)
T PF15070_consen  110 NEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKA-TASRA-LSQNRELKEQLAELQDAFVKLTNENMELT  187 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccch-HHHHH-HHhHHHHHHHHHHHHHHHHHHHHhhhHhh
Confidence            3322              2222222      2233333332111 01111 14556888889999998888888876654


Q ss_pred             HH-------HHHHhhhcc
Q psy2772         566 AQ-------VKQLTEKSN  576 (746)
Q Consensus       566 ~q-------VrqLt~~s~  576 (746)
                      .+       .|.|+.+-+
T Consensus       188 ~~lq~Eq~~~keL~~kl~  205 (617)
T PF15070_consen  188 SALQSEQHVKKELQKKLG  205 (617)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            33       357874433

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.47  E-value=4.7  Score=47.39  Aligned_cols=81  Identities=17%  Similarity=0.196  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Q psy2772         480 LLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQR  559 (746)
Q Consensus       480 lLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsr  559 (746)
                      .|+++.-.++..-.+.-.++|+++.....|++-+..+.+.++.+.-.         .+..-..+.+||+++++.+.+|+.
T Consensus       583 ~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~---------LS~AEr~~~~EL~~~~~~l~~l~~  653 (717)
T PF10168_consen  583 ELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPV---------LSEAEREFKKELERMKDQLQDLKA  653 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC---------CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555555555556788889988888988888888877643211         122235688999999998877765


Q ss_pred             HHHHHHHHHH
Q psy2772         560 QRQELSAQVK  569 (746)
Q Consensus       560 QRqeLs~qVr  569 (746)
                      .=.++...++
T Consensus       654 si~~lk~k~~  663 (717)
T PF10168_consen  654 SIEQLKKKLD  663 (717)
T ss_pred             HHHHHHHHHH
Confidence            5444444443

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=90.37  E-value=2.5  Score=40.38  Aligned_cols=88  Identities=20%  Similarity=0.260  Sum_probs=59.9

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772         431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE  510 (746)
Q Consensus       431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE  510 (746)
                      .=+..|..+++.|..+-|+++.-|..+...++.....-...+.+-.--.+||++|-....-|.....+|+++=..-..+|
T Consensus        35 ~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~e  114 (143)
T PF12718_consen   35 QEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFE  114 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            33455666666777777777777777777766665555555656556667778887777777777777777777777777


Q ss_pred             HHHHHHHH
Q psy2772         511 SELVVLRQ  518 (746)
Q Consensus       511 ~EV~~LRq  518 (746)
                      +-|..|-+
T Consensus       115 Rkv~~le~  122 (143)
T PF12718_consen  115 RKVKALEQ  122 (143)
T ss_pred             HHHHHHHh
Confidence            76666544

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>TIGR00606 rad50 rad50

Probab=90.22  E-value=8.9  Score=47.28  Aligned_cols=36  Identities=14%  Similarity=0.087  Sum_probs=16.4

Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHH
Q psy2772         481 LERELSRVRSILAHNSKKLEETVAANARLESELVVL  516 (746)
Q Consensus       481 LE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~L  516 (746)
                      ||.++..+..+|....++++....++.+++.++..|
T Consensus       827 le~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L  862 (1311)
T TIGR00606       827 VNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL  862 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444455555555554444

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=90.15  E-value=5.9  Score=46.54  Aligned_cols=134  Identities=26%  Similarity=0.310  Sum_probs=84.4

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHH----HHHHHHHHHHHHHHHHHHHHh----hhHH--------
Q psy2772         435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVER----YRRQQRLLERELSRVRSILAH----NSKK--------  498 (746)
Q Consensus       435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EK----i~~QQrlLE~eLsrVRaeLSr----nSkE--------  498 (746)
                      .+...|++||+|-|.|++-|..|-+.-++.+.+-+.+||    -+.|+-.||.+|..-|..=-+    ....        
T Consensus       457 ~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~~~~~~r  536 (697)
T PF09726_consen  457 SLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALAQAQATR  536 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccccchhcc
Confidence            344568999999999999999998888888777666665    355667788888776643111    0000        


Q ss_pred             HHHHH---HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHH-----------HHHHHHHHHHHHHH--
Q psy2772         499 LEETV---AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELR-----------RVQALVGDLQRQRQ--  562 (746)
Q Consensus       499 LE~tw---aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELw-----------RIQdVvggLsrQRq--  562 (746)
                      =|.+=   ..-..||.|+-.||..|...-+             +..+||+|++           .++.||..|+.-+.  
T Consensus       537 ~e~~e~~r~r~~~lE~E~~~lr~elk~kee-------------~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk~  603 (697)
T PF09726_consen  537 QECAESCRQRRRQLESELKKLRRELKQKEE-------------QIRELESELQELRKYEKESEKDTEVLMSALSAMQDKN  603 (697)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            01111   1235588888888888775433             2233444332           36667777766543  


Q ss_pred             -------------------HHHHHHHHHhhhccccccc
Q psy2772         563 -------------------ELSAQVKQLTEKSNSLSQQ  581 (746)
Q Consensus       563 -------------------eLs~qVrqLt~~s~~l~~q  581 (746)
                                         .|+.+-|||......+.++
T Consensus       604 ~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~  641 (697)
T PF09726_consen  604 QHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKK  641 (697)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                               3677888888776666553

; GO: 0016021 integral to membrane

>KOG0240|consensus

Probab=89.61  E-value=6.1  Score=45.88  Aligned_cols=145  Identities=15%  Similarity=0.137  Sum_probs=95.3

Q ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhhh----hhHHHHHHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHH
Q psy2772         417 GVMIHAISRDQIASKLHSRGRNICSVQG----QAKEMLENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRV  488 (746)
Q Consensus       417 ~d~d~klSr~ce~dKilqelE~kLq~Lk----~DKD~LEsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrV  488 (746)
                      +|.+.-++-.....-++.+.+..|..++    +++|.++.-+..|.||+.+..++    -+..+++.+|-..=++=|+..
T Consensus       382 ~de~~~~~~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~e~~~~L~qqlD~kd~~~n~~sqL~~~lk~q~~~qee~~s~~  461 (607)
T KOG0240|consen  382 EDEDFSLKEEAKMSAILSEEEMSITKLKGSLEEEEDILTERIESLYQQLDQKDDQINKQSQLMEKLKEQLLDQEELLSST  461 (607)
T ss_pred             chhhhhHHHHHHhhhhhhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            4555555555555555566677777776    89999999999999987666543    566677777666656666777


Q ss_pred             HHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcc-----hHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         489 RSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPS-----VAALEAELRRVQALVGDLQRQRQE  563 (746)
Q Consensus       489 RaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qe-----kAqLekELwRIQdVvggLsrQRqe  563 (746)
                      |+++.....+|-+.-.++..-+++|..+-++|.+-..+..-      ..++     ..-+++||-..|..+++-++.=.+
T Consensus       462 ~~~~e~~q~e~~~~Q~~~e~~~~e~~e~~~al~el~~~~~~------~~~~~~~~~~~n~~sel~sl~~~~~~~~~r~~~  535 (607)
T KOG0240|consen  462 RRLYEDIQQELSEIQEENEAAKDEVKEVLTALEELAVNYDQ------KSEEKESKLSQNLKSELQSLQEPSEHQSKRITE  535 (607)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH------HHHHHhhhhhhhhHHHHHhhhhcccchhHHHHH
Confidence            88777777777777777777777777777777654443110      1111     111678888888887776666555


Q ss_pred             HHHH
Q psy2772         564 LSAQ  567 (746)
Q Consensus       564 Ls~q  567 (746)
                      |-..
T Consensus       536 ~~~~  539 (607)
T KOG0240|consen  536 LLSE  539 (607)
T ss_pred             HHHH
Confidence            5443

>PRK09039 hypothetical protein; Validated

Probab=89.30  E-value=24  Score=38.03  Aligned_cols=76  Identities=16%  Similarity=0.122  Sum_probs=34.9

Q ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772         427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAAN  506 (746)
Q Consensus       427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy  506 (746)
                      ...+..+.+++..+..++..++.||+.+.+..                 .+..-+|..+.....+|+...++..++-.+.
T Consensus        77 ~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~-----------------~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V  139 (343)
T PRK09039         77 QDLQDSVANLRASLSAAEAERSRLQALLAELA-----------------GAGAAAEGRAGELAQELDSEKQVSARALAQV  139 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----------------hhcchHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            33444455555555555555555555554221                 0112233333333344444444444444555


Q ss_pred             hhhHHHHHHHHHH
Q psy2772         507 ARLESELVVLRQK  519 (746)
Q Consensus       507 aRLE~EV~~LRqk  519 (746)
                      .+|-+++..||..
T Consensus       140 ~~L~~qI~aLr~Q  152 (343)
T PRK09039        140 ELLNQQIAALRRQ  152 (343)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555544

>PRK11281 hypothetical protein; Provisional

Probab=89.20  E-value=12  Score=46.21  Aligned_cols=87  Identities=20%  Similarity=0.265  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc--------cCC--CCCCCC-------cchHHHHHHHHHHHHHHHHHHH
Q psy2772         497 KKLEETVAANARLESELVVLRQKLQWSRREVC--------NGT--ASLSNG-------PSVAALEAELRRVQALVGDLQR  559 (746)
Q Consensus       497 kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~--------~~~--~~~~~~-------qekAqLekELwRIQdVvggLsr  559 (746)
                      +..+..-.+..++|+++..|...+-.+|...+        ...  ...+..       ....+|-.+|-..-+-|+.|.+
T Consensus       227 ~q~d~~~~~~~~~~~~~~~lq~~in~kr~~~se~~~~~a~~~~~~~~~~~~p~i~~~~~~N~~Ls~~L~~~t~~~~~l~~  306 (1113)
T PRK11281        227 KQRDYLTARIQRLEHQLQLLQEAINSKRLTLSEKTVQEAQSQDEAARIQANPLVAQELEINLQLSQRLLKATEKLNTLTQ  306 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566677777777777776665443211        000  000000       1122333344444444555555


Q ss_pred             HHHHHHHHHHHHhhhccccccccc
Q psy2772         560 QRQELSAQVKQLTEKSNSLSQQIR  583 (746)
Q Consensus       560 QRqeLs~qVrqLt~~s~~l~~qi~  583 (746)
                      +.....++.+++++.-.++.+||.
T Consensus       307 ~~~~~~~~l~~~~q~~~~i~eqi~  330 (1113)
T PRK11281        307 QNLRVKNWLDRLTQSERNIKEQIS  330 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555555566655555555553

>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]

Probab=88.75  E-value=16  Score=42.18  Aligned_cols=192  Identities=13%  Similarity=0.107  Sum_probs=110.3

Q ss_pred             EeeeccccccccccccccccccccccCCCCcceeeecc----------hhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHH
Q psy2772         381 LLEVYRLGGPLACGPWKVHAELPIRVRPVSPIRIRIGV----------MIHAISRDQIASKLHSRGRNICSVQGQAKEML  450 (746)
Q Consensus       381 ~aYTNHTILpEALEkWpv~~~l~irvrp~~p~ri~e~d----------~d~klSr~ce~dKilqelE~kLq~Lk~DKD~L  450 (746)
                      |.-+||..|.+.=+.=|.+-|+-.++.-  -+-+---|          ..-|++--.+.|.-.+.+++|-+.|++|--++
T Consensus       237 ~~~~Y~~fl~~~~~~~~~e~Elk~~f~~--~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~  314 (622)
T COG5185         237 FTESYKSFLKLEDNYEPSEQELKLGFEK--FVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKSDSNKY  314 (622)
T ss_pred             HHHHHHHHhcCCCccCchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            4457788887776666666555544432  11111122          33445555556667889999999999999999


Q ss_pred             HHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772         451 ENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRVRSILAHN---SKKLEETVAANARLESELVVLRQKLQWS  523 (746)
Q Consensus       451 EsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrVRaeLSrn---SkELE~twaEyaRLE~EV~~LRqkLQaQ  523 (746)
                      +++.-+++++|+.+-.-    ..++++...|-..|+......|.+|-.-   ..+.|.-.+|-.+|-+||.-+.-+--.=
T Consensus       315 ~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L  394 (622)
T COG5185         315 ENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKL  394 (622)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            99999999999987522    3345555666666666666666666542   3566777777777777666554433322


Q ss_pred             HhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy2772         524 RREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR  583 (746)
Q Consensus       524 r~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~  583 (746)
                      +-.         ...++...|.=..-+++.+-++-.-+++++.---|+....+-..-.|+
T Consensus       395 ~k~---------V~~~~leaq~~~~slek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN  445 (622)
T COG5185         395 TKS---------VKSRKLEAQGIFKSLEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKIN  445 (622)
T ss_pred             HHH---------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHhhcCCCCceeec
Confidence            211         111223333333344444444444444444433444444444443443

>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family

Probab=88.75  E-value=8.3  Score=40.52  Aligned_cols=146  Identities=17%  Similarity=0.106  Sum_probs=80.2

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhH
Q psy2772         432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAE-VERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLE  510 (746)
Q Consensus       432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~-~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE  510 (746)
                      -+.-++..+..++++-+..|.+|..-+.+=.-.  +|.. ......+-..|+.+|..++++|+....-+.+.=-+.-.|+
T Consensus       171 a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~--d~~~~~~~~~~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~  248 (362)
T TIGR01010       171 TIAFAENEVKEAEQRLNATKAELLKYQIKNKVF--DPKAQSSAQLSLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQ  248 (362)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHH
Confidence            334444555555555555555554444441111  4543 4445566677777777777777755443333333455678


Q ss_pred             HHHHHHHHHHHHHHhhhccCCC-CCC-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772         511 SELVVLRQKLQWSRREVCNGTA-SLS-NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS  579 (746)
Q Consensus       511 ~EV~~LRqkLQaQr~~~~~~~~-~~~-~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~  579 (746)
                      .++..|+..+++...+...+.. .+. ...+-..|++|+.-.+++...+-.+.++...+..+=.-....+.
T Consensus       249 ~~i~~l~~~i~~e~~~i~~~~~~~l~~~~~~~~~L~re~~~a~~~y~~~l~r~~~a~~~~~~~~~~~~vi~  319 (362)
T TIGR01010       249 ARIKSLRKQIDEQRNQLSGGLGDSLNEQTADYQRLVLQNELAQQQLKAALTSLQQTRVEADRQQLYLEVIS  319 (362)
T ss_pred             HHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeeee
Confidence            8888888888876543222100 000 11334467777777777777777777777655444333333333

This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.

>PRK10361 DNA recombination protein RmuC; Provisional

Probab=88.63  E-value=7.6  Score=44.07  Aligned_cols=132  Identities=15%  Similarity=0.226  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhh
Q psy2772         448 EMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREV  527 (746)
Q Consensus       448 D~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~  527 (746)
                      ..+...|+.++.++.+....-...+....+-..++.++...++++++..+.||..-.....--..+...++.|..+-.+-
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~L  118 (475)
T PRK10361         39 EEMVAELSAAKQQITQSEHWRAECELLNNEVRSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENL  118 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555544333445556666667777778888888888888888777776666667888888888777664


Q ss_pred             ccCCCCCC------CCcc-------hHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhccccccc
Q psy2772         528 CNGTASLS------NGPS-------VAALEAELRRVQALVGDL----QRQRQELSAQVKQLTEKSNSLSQQ  581 (746)
Q Consensus       528 ~~~~~~~~------~~qe-------kAqLekELwRIQdVvggL----srQRqeLs~qVrqLt~~s~~l~~q  581 (746)
                      ++-  -+.      ..+.       -..|+..|.+.+.-|..+    .+.|.+|..++++|.+.+..+.+.
T Consensus       119 A~~--ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~e  187 (475)
T PRK10361        119 ANR--IFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQE  187 (475)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            331  000      0011       122345555555555544    467899999999999877776643

>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family

Probab=88.45  E-value=21  Score=36.62  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHHHhhhHHHHHHHHHHHHHH
Q psy2772         470 EVERYRRQQRLLERELSRVRSILAHNS---KKLEETVAANARLESELVVLRQKLQWS  523 (746)
Q Consensus       470 ~~EKi~~QQrlLE~eLsrVRaeLSrnS---kELE~twaEyaRLE~EV~~LRqkLQaQ  523 (746)
                      .++.+..+-.+.++++.|.+.+..+..   .+++++-.+|..++.++..++..+..+
T Consensus       105 ~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~~~~~~~  161 (327)
T TIGR02971       105 TLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEALASRSEQ  161 (327)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666777788888887777763   788888888888888888888777633

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=88.36  E-value=7.5  Score=47.64  Aligned_cols=39  Identities=26%  Similarity=0.325  Sum_probs=24.9

Q ss_pred             HHhhhcccccccccCCCccccccccccCCCCCCCcccccc
Q psy2772         570 QLTEKSNSLSQQIRPGPTGVAVAGKSVNRPGPTGVAGKVS  609 (746)
Q Consensus       570 qLt~~s~~l~~qi~~~~~~~~~~~~~~~~~~~~~~~~~~~  609 (746)
                      ++.+....|..++.|.+-..- .=-.-|.||=..--|||.
T Consensus       522 ~~~~~~~~l~~~L~p~~gSL~-~fL~~~~p~We~tIGKVi  560 (1201)
T PF12128_consen  522 ELRAQIAELQRQLDPQKGSLL-EFLRKNKPGWEQTIGKVI  560 (1201)
T ss_pred             HHHHHHHHHHHhhCCCCCcHH-HHHHhCCCcHHHHhHhhC
Confidence            344556677777877765432 122457888888888885

>smart00787 Spc7 Spc7 kinetochore protein

Probab=88.16  E-value=15  Score=39.40  Aligned_cols=36  Identities=25%  Similarity=0.515  Sum_probs=28.0

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2772         539 SVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEK  574 (746)
Q Consensus       539 ekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~  574 (746)
                      .-.+++.+|..+.+.++....+++++-.+++.+...
T Consensus       226 ~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~  261 (312)
T smart00787      226 KLEELEEELQELESKIEDLTNKKSELNTEIAEAEKK  261 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445577888888888888888888888888877653

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>TIGR03017 EpsF chain length determinant protein EpsF

Probab=88.04  E-value=19  Score=38.41  Aligned_cols=114  Identities=12%  Similarity=0.101  Sum_probs=65.8

Q ss_pred             hhhhhhhHHHHHHHHHHHhHhhhccCC-ChHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHhhhHHHHHHHH
Q psy2772         440 CSVQGQAKEMLENALGSLRHKMHGVHA-SPAEVERYRRQQRLLERELSRVRS-ILAHNSKKLEETVAANARLESELVVLR  517 (746)
Q Consensus       440 Lq~Lk~DKD~LEsAL~~L~qqME~~~d-qPa~~EKi~~QQrlLE~eLsrVRa-eLSrnSkELE~twaEyaRLE~EV~~LR  517 (746)
                      ++.|+.+...+|.-|..++..   |.+ +|... .++.|...|++.|..-.+ ..+...++++.+-+..+.|+..+..++
T Consensus       256 i~~l~~~l~~le~~l~~l~~~---y~~~hP~v~-~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  331 (444)
T TIGR03017       256 IQNLKTDIARAESKLAELSQR---LGPNHPQYK-RAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQK  331 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH---hCCCCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445555555556666665544   443 35443 455555555555433211 122223444555555666666666666


Q ss_pred             HHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         518 QKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQ  567 (746)
Q Consensus       518 qkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~q  567 (746)
                      +.+..--.          ...+-..|++|+.-.+++-..|-.+++|...+
T Consensus       332 ~~~~~l~~----------~~~~~~~L~r~~~~~~~~y~~ll~r~~e~~l~  371 (444)
T TIGR03017       332 AKVLELNR----------QRDEMSVLQRDVENAQRAYDAAMQRYTQTRIE  371 (444)
T ss_pred             HHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65552211          12355678999999999999999999888654

Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.

>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein

Probab=87.43  E-value=21  Score=39.02  Aligned_cols=48  Identities=10%  Similarity=0.028  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772         475 RRQQRLLERELSRVRSILAHN---SKKLEETVAANARLESELVVLRQKLQW  522 (746)
Q Consensus       475 ~~QQrlLE~eLsrVRaeLSrn---SkELE~twaEyaRLE~EV~~LRqkLQa  522 (746)
                      ..+.+.++.++...+.++.+.   +.++.+...++++|+.++..++..+.+
T Consensus       211 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~  261 (457)
T TIGR01000       211 QSLYENYQAQLKSASDKDQKNQVKSTILATIQQQIDQLQKSIASYQVQKAG  261 (457)
T ss_pred             HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333445555655555543332   125666677777888887777777664

This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.

>TIGR01005 eps_transp_fam exopolysaccharide transport protein family

Probab=87.43  E-value=16  Score=42.17  Aligned_cols=24  Identities=17%  Similarity=0.311  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         542 ALEAELRRVQALVGDLQRQRQELS  565 (746)
Q Consensus       542 qLekELwRIQdVvggLsrQRqeLs  565 (746)
                      .|++.|..++.-+..+..+..+|.
T Consensus       356 ~L~~~l~~~~~~~~~~~~~~~e~~  379 (754)
T TIGR01005       356 QLVSDVNQLKAASAQAGEQQVDLD  379 (754)
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHH
Confidence            344444444444444444444333

The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.

>COG2433 Uncharacterized conserved protein [Function unknown]

Probab=87.42  E-value=3.4  Score=48.13  Aligned_cols=99  Identities=21%  Similarity=0.168  Sum_probs=67.0

Q ss_pred             ecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772         416 IGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN  495 (746)
Q Consensus       416 e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn  495 (746)
                      ..|..+...++-...+.++.++..++.|+..-+.|++-+.-|+.+++.++       +=.++.....+++..-...|...
T Consensus       414 ~~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~-------r~~~~~~~~~rei~~~~~~I~~L  486 (652)
T COG2433         414 RREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELERFR-------REVRDKVRKDREIRARDRRIERL  486 (652)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHHHHHHHHHH
Confidence            34555555666666666666666666655555555544444444444433       33346677778888888888999


Q ss_pred             hHHHHHHHHHHhhhHHHHHHHH--HHHH
Q psy2772         496 SKKLEETVAANARLESELVVLR--QKLQ  521 (746)
Q Consensus       496 SkELE~twaEyaRLE~EV~~LR--qkLQ  521 (746)
                      -++|++.-.+-..||+++..||  ++|.
T Consensus       487 ~~~L~e~~~~ve~L~~~l~~l~k~~~lE  514 (652)
T COG2433         487 EKELEEKKKRVEELERKLAELRKMRKLE  514 (652)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999  5555

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=87.38  E-value=0.18  Score=59.47  Aligned_cols=148  Identities=18%  Similarity=0.278  Sum_probs=0.0

Q ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHH----HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q psy2772         431 KLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVE----RYRRQQRLLERELSRVRSILAHNSKKLEETVAAN  506 (746)
Q Consensus       431 KilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~E----Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEy  506 (746)
                      ..+.++...|.+|++.|.+||+.=..+..++..-..+-....    .+..+.+.||.+|..++..+......+-..-...
T Consensus       131 ~~~~eL~eqle~lqk~k~~lEK~k~~l~~e~~dL~~~l~~~~k~k~~~Ek~~K~lE~qL~El~~klee~er~~~el~~~k  210 (859)
T PF01576_consen  131 DAVAELNEQLEQLQKQKAKLEKEKSQLEAELDDLQAQLDSLQKAKQEAEKKRKQLEAQLNELQAKLEESERQRNELTEQK  210 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445677778888888888888765544444433333322211    2234577899999999999999988888888999


Q ss_pred             hhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772         507 ARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP  584 (746)
Q Consensus       507 aRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~  584 (746)
                      .||+.|+..|...|.+.......      ....+..|+..|--++.-+..-++.|..|..++++|..-.+.|..++.-
T Consensus       211 ~kL~~E~~eL~~qLee~e~~~~~------l~r~k~~L~~qLeelk~~leeEtr~k~~L~~~l~~le~e~~~L~eqlee  282 (859)
T PF01576_consen  211 AKLQSENSELTRQLEEAESQLSQ------LQREKSSLESQLEELKRQLEEETRAKQALEKQLRQLEHELEQLREQLEE  282 (859)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999876533222      3357788999999999999999999999999999999888888777653

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=87.23  E-value=7.4  Score=39.08  Aligned_cols=102  Identities=19%  Similarity=0.123  Sum_probs=71.5

Q ss_pred             chhhhhhhhhhhhhhhhhhhh----------hhh---hhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHH
Q psy2772         418 VMIHAISRDQIASKLHSRGRN----------ICS---VQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERE  484 (746)
Q Consensus       418 d~d~klSr~ce~dKilqelE~----------kLq---~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~e  484 (746)
                      .+|.=.+.+....|.+.+||.          +|.   ++|.+..++-.-+..+..+|+..   -+...++...-..||..
T Consensus        63 ~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~---~~~~~~~e~~i~~Le~k  139 (190)
T PF05266_consen   63 QIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEK---EAELKELESEIKELEMK  139 (190)
T ss_pred             ccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH---HHhhhhHHHHHHHHHHH
Confidence            344445666667777776663          233   33444444444445555666555   33456677778889999


Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772         485 LSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW  522 (746)
Q Consensus       485 LsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa  522 (746)
                      |...+.+.+...+++|...+|.+||+.++..+.+.+..
T Consensus       140 i~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~~~~  177 (190)
T PF05266_consen  140 ILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEEIEN  177 (190)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888763

>TIGR02231 conserved hypothetical protein

Probab=87.16  E-value=2.8  Score=46.35  Aligned_cols=32  Identities=13%  Similarity=-0.031  Sum_probs=18.2

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhh
Q psy2772         430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKM  461 (746)
Q Consensus       430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqM  461 (746)
                      +.-+++++++|..|++++..++..+..+..++
T Consensus        70 ~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~  101 (525)
T TIGR02231        70 PERLAELRKQIRELEAELRDLEDRGDALKALA  101 (525)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455566666666666666665555555554

This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=87.11  E-value=18  Score=40.90  Aligned_cols=92  Identities=14%  Similarity=0.074  Sum_probs=60.0

Q ss_pred             hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHH-----HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772         428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERY-----RRQQRLLERELSRVRSILAHNSKKLEET  502 (746)
Q Consensus       428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi-----~~QQrlLE~eLsrVRaeLSrnSkELE~t  502 (746)
                      +..++|.+|+..-.-..+-|.+||.++..-++-++....-..-+..+     ..-...++++|-.+|.+.+.+..+|.-+
T Consensus        56 ~k~~~l~ELe~akr~veel~~kLe~~~~~~~~a~~~~e~~k~r~~e~e~~~~~~~~~~~k~ele~~~~q~~~~~~eL~~~  135 (522)
T PF05701_consen   56 EKAQALSELESAKRTVEELKLKLEKAQAEEKQAEEDSELAKFRAKELEQGIAEEASVAWKAELESAREQYASAVAELDSV  135 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777777777777777777777765444333222111111111     1113337888999999999999999999


Q ss_pred             HHHHhhhHHHHHHHHHH
Q psy2772         503 VAANARLESELVVLRQK  519 (746)
Q Consensus       503 waEyaRLE~EV~~LRqk  519 (746)
                      ..|..+|.+|+.-+...
T Consensus       136 k~EL~~lr~e~~~~~~~  152 (522)
T PF05701_consen  136 KQELEKLRQELASALDA  152 (522)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999998877543

Several sequences in this family are described as being myosin heavy chain-like.

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.07  E-value=11  Score=40.25  Aligned_cols=118  Identities=19%  Similarity=0.188  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhHhhhccCCChHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772         449 MLENALGSLRHKMHGVHASPAEVE---RYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRR  525 (746)
Q Consensus       449 ~LEsAL~~L~qqME~~~dqPa~~E---Ki~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~  525 (746)
                      .|+.-++.+..+...|..=-..++   .....-..++++|..+..+-...-++|++.=.|...|++|+..|...+.+.-+
T Consensus        13 ~l~~~~~~~~~E~~~Y~~fL~~l~~~~~~~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~   92 (314)
T PF04111_consen   13 QLDKQLEQAEKERDTYQEFLKKLEEESDSEEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDE   92 (314)
T ss_dssp             -----------------------------HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444555555543322222   12222334455555555555555555555555555555555444443332111


Q ss_pred             hhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy2772         526 EVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLS  579 (746)
Q Consensus       526 ~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~  579 (746)
                                   +-...-++..-.+.-+..+...|++|.+|.+.+.++-+.|.
T Consensus        93 -------------eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~  133 (314)
T PF04111_consen   93 -------------EEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLR  133 (314)
T ss_dssp             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                         11223333333445555777888889999998888888887

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=86.99  E-value=22  Score=34.68  Aligned_cols=73  Identities=21%  Similarity=0.222  Sum_probs=43.3

Q ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHH
Q psy2772         435 RGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELV  514 (746)
Q Consensus       435 elE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~  514 (746)
                      ..+++|..-+.+||.|+.=..++.+.+++...+          +..+..|.-.-++++...-.+|+....+..+|+.||.
T Consensus         7 ~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~----------~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~   76 (140)
T PF10473_consen    7 HVEEKLKESESEKDSLEDHVESLERELEMSQEN----------KECLILDAENSKAEIETLEEELEELTSELNQLELELD   76 (140)
T ss_pred             HHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888899999998888888888877766          3333333334444444444444444444444444444


Q ss_pred             HHH
Q psy2772         515 VLR  517 (746)
Q Consensus       515 ~LR  517 (746)
                      -+|
T Consensus        77 ~l~   79 (140)
T PF10473_consen   77 TLR   79 (140)
T ss_pred             HHH
Confidence            333

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=86.77  E-value=37  Score=37.08  Aligned_cols=83  Identities=25%  Similarity=0.205  Sum_probs=48.2

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH---HHHH-----
Q psy2772         430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK---KLEE-----  501 (746)
Q Consensus       430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk---ELE~-----  501 (746)
                      --+..+|..+|.+|+++|..||.+|+.=+         -.++.++..+=.-|+.+....+..|.+.-.   +||+     
T Consensus       105 E~ltn~L~rkl~qLr~EK~~lE~~Le~Eq---------E~~V~kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~E  175 (310)
T PF09755_consen  105 EFLTNDLSRKLNQLRQEKVELENQLEQEQ---------EYLVNKLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQE  175 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHH
Confidence            45667888999999999999999987422         223444444444444444433333333321   2333     


Q ss_pred             -------HHHHHhhhHHHHHHHHHHHH
Q psy2772         502 -------TVAANARLESELVVLRQKLQ  521 (746)
Q Consensus       502 -------twaEyaRLE~EV~~LRqkLQ  521 (746)
                             -|.--++|+.|=-.|..+|.
T Consensus       176 QE~lvN~L~Kqm~~l~~eKr~Lq~~l~  202 (310)
T PF09755_consen  176 QEALVNRLWKQMDKLEAEKRRLQEKLE  202 (310)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence                   36666777776444444443

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=86.73  E-value=12  Score=46.46  Aligned_cols=115  Identities=16%  Similarity=0.148  Sum_probs=61.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccC---------C
Q psy2772         468 PAEVERYRRQQRLLERELSRVRSILAHNS-------KKLEETVAANARLESELVVLRQKLQWSRREVCNG---------T  531 (746)
Q Consensus       468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnS-------kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~---------~  531 (746)
                      ++...++.-++..|+-++.--++++.-++       +..+-.-.+..++|+++..|++.+-.+|...+-.         .
T Consensus       172 ~a~~~~lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~  251 (1109)
T PRK10929        172 QAQLTALQAESAALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAE  251 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            33333444444455555555555544443       3445566777888888888888877766432100         0


Q ss_pred             CCCCCC-------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy2772         532 ASLSNG-------PSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI  582 (746)
Q Consensus       532 ~~~~~~-------qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi  582 (746)
                      ...+.+       +...+|=.+|-..-+-|..|.++.....++..++++.-+++.+||
T Consensus       252 ~~~~~~~~i~~~~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~~q~~~~i~eQi  309 (1109)
T PRK10929        252 QSGDLPKSIVAQFKINRELSQALNQQAQRMDLIASQQRQAASQTLQVRQALNTLREQS  309 (1109)
T ss_pred             hhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000       122333444555555555566666666666666666666666665

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=86.52  E-value=22  Score=42.13  Aligned_cols=99  Identities=20%  Similarity=0.252  Sum_probs=63.3

Q ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhh------
Q psy2772         427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRVRSILAHNS------  496 (746)
Q Consensus       427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrVRaeLSrnS------  496 (746)
                      ..++++-.+++.++..|+..|++-=.-|..+.++++.-.+.    -.-.|.|...|+.|.+-+-++...+....      
T Consensus       554 ~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P~LS~A  633 (717)
T PF10168_consen  554 EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLPVLSEA  633 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCHH
Confidence            34677777888888888888887555555555554444322    13467778889999888888877765522      


Q ss_pred             -----HHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772         497 -----KKLEETVAANARLESELVVLRQKLQWSRR  525 (746)
Q Consensus       497 -----kELE~twaEyaRLE~EV~~LRqkLQaQr~  525 (746)
                           +||+..=.+...|-..+.++|.+++.|..
T Consensus       634 Er~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~  667 (717)
T PF10168_consen  634 EREFKKELERMKDQLQDLKASIEQLKKKLDYQQR  667 (717)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 34444444445555666667777766554

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms

Probab=86.48  E-value=3.7  Score=44.68  Aligned_cols=93  Identities=19%  Similarity=0.232  Sum_probs=64.6

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC-hHHHHHH--------------HHHHHHHHHHHHHHHHHHHhhhHH
Q psy2772         434 SRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS-PAEVERY--------------RRQQRLLERELSRVRSILAHNSKK  498 (746)
Q Consensus       434 qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq-Pa~~EKi--------------~~QQrlLE~eLsrVRaeLSrnSkE  498 (746)
                      ++=...|.+.++-+..+++++...+.++.....+ -..+|||              ..+-+.++++|+.++....+.|.-
T Consensus       216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~~s~~  295 (359)
T PF10498_consen  216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQASEG  295 (359)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4445556666666666776666666666555443 2223333              344566677777777777777888


Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhh
Q psy2772         499 LEETVAANARLESELVVLRQKLQWSRRE  526 (746)
Q Consensus       499 LE~twaEyaRLE~EV~~LRqkLQaQr~~  526 (746)
                      ..+-.+++++|=.++++.|+.|++....
T Consensus       296 V~~~t~~L~~IseeLe~vK~emeerg~~  323 (359)
T PF10498_consen  296 VSERTRELAEISEELEQVKQEMEERGSS  323 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            8888889999999999999999987653

Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.

>PF14988 DUF4515: Domain of unknown function (DUF4515)

Probab=86.29  E-value=18  Score=36.69  Aligned_cols=138  Identities=23%  Similarity=0.229  Sum_probs=76.9

Q ss_pred             hhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHH
Q psy2772         429 ASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRL-------LERELSRVRSILAHNSKKLEE  501 (746)
Q Consensus       429 ~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrl-------LE~eLsrVRaeLSrnSkELE~  501 (746)
                      .++++.+-..++..|+..--.-++-+..+++++.       .+.-|+..+..       |++++.+++++-+..--+|+-
T Consensus        38 r~~l~s~y~~q~~~Lq~qLlq~~k~~~~l~~eLq-------~l~~~~~~k~~qe~eI~~Le~e~~~~~~e~~~~l~~~~~  110 (206)
T PF14988_consen   38 RQELVSRYAKQTSELQDQLLQKEKEQAKLQQELQ-------ALKEFRRLKEQQEREIQTLEEELEKMRAEHAEKLQEAES  110 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555554444555555555543       34444444444       555555555555555555543


Q ss_pred             -HHHHHhhhHHHHHHHHHHHHHHHhhhcc----------CCCCCC-----CCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         502 -TVAANARLESELVVLRQKLQWSRREVCN----------GTASLS-----NGPSVAALEAELRRVQALVGDLQRQRQELS  565 (746)
Q Consensus       502 -twaEyaRLE~EV~~LRqkLQaQr~~~~~----------~~~~~~-----~~qekAqLekELwRIQdVvggLsrQRqeLs  565 (746)
                       -..|-++||.++..++-.+-+.+.+.-.          +..+++     ...+..+|.++|...-.=...|...|..|.
T Consensus       111 qfl~EK~~LEke~~e~~i~~l~e~a~~el~~k~~ale~~A~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le  190 (206)
T PF14988_consen  111 QFLQEKARLEKEASELKILQLGERAHKELKKKAQALELAAKKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLE  190 (206)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             3467789999885555444333332220          000011     125666778888777777777777887777


Q ss_pred             HHHHHHhh
Q psy2772         566 AQVKQLTE  573 (746)
Q Consensus       566 ~qVrqLt~  573 (746)
                      .+-.+|..
T Consensus       191 ~qk~~L~~  198 (206)
T PF14988_consen  191 KQKQQLQQ  198 (206)
T ss_pred             HHHHHHHH
Confidence            77777753

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=86.15  E-value=37  Score=34.22  Aligned_cols=130  Identities=17%  Similarity=0.203  Sum_probs=83.6

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q psy2772         424 SRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETV  503 (746)
Q Consensus       424 Sr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~tw  503 (746)
                      .+.+..+|.|.+.......|.+--.+++.=...|+.++..|..+-+....+..+...++.+|...+-+-.-....+    
T Consensus        41 k~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~----  116 (201)
T PF13851_consen   41 KKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRF----  116 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence            4667788999999999999999888888889999999999988888888888888888887777665544444333    


Q ss_pred             HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         504 AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELS  565 (746)
Q Consensus       504 aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs  565 (746)
                         .+||+|-..|.++.........-     -++-....||+-|.-+.+.++.-.+|-.++-
T Consensus       117 ---~kle~ErdeL~~kf~~~i~evqQ-----k~~~kn~lLEkKl~~l~~~lE~keaqL~evl  170 (201)
T PF13851_consen  117 ---EKLEQERDELYRKFESAIQEVQQ-----KTGLKNLLLEKKLQALSEQLEKKEAQLNEVL  170 (201)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               44444444444433322210000     0111334467666666666666555555543

>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily

Probab=86.15  E-value=26  Score=38.24  Aligned_cols=67  Identities=15%  Similarity=0.141  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         497 KKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSA  566 (746)
Q Consensus       497 kELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~  566 (746)
                      ..+.++-++++.|+..+..|++.+.+.......   ..+...+-..|++|+.--+.+...|..++++...
T Consensus       317 ~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~---~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~  383 (498)
T TIGR03007       317 IELAEAEAEIASLEARVAELTARIERLESLLRT---IPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEV  383 (498)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355556667777777777777776655433221   0112356667888888888888888888777544

Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.

>KOG0995|consensus

Probab=85.85  E-value=36  Score=39.89  Aligned_cols=116  Identities=18%  Similarity=0.214  Sum_probs=74.2

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHhh
Q psy2772         436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNS-------KKLEETVAANAR  508 (746)
Q Consensus       436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnS-------kELE~twaEyaR  508 (746)
                      ++.....+-.+-+.|++..+.|-.+|......|...+..+.-...||.|+.--++-+++.-       ++|+.-=.|..+
T Consensus       226 l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~  305 (581)
T KOG0995|consen  226 LEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEE  305 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence            3344444555778888888888888887788899999999999999999998888776652       334444445555


Q ss_pred             hHHHHHHHHH---HHHHHHhhhccCCCCCCCC-------cchHHHHHHHHHHHHHHHHH
Q psy2772         509 LESELVVLRQ---KLQWSRREVCNGTASLSNG-------PSVAALEAELRRVQALVGDL  557 (746)
Q Consensus       509 LE~EV~~LRq---kLQaQr~~~~~~~~~~~~~-------qekAqLekELwRIQdVvggL  557 (746)
                      -|.|.+.|++   .|+.|.++..-      ++       ++..+|++||.+|+-=..+|
T Consensus       306 kEeE~e~lq~~~d~Lk~~Ie~Q~i------S~~dve~mn~Er~~l~r~l~~i~~~~d~l  358 (581)
T KOG0995|consen  306 KEEEIEKLQKENDELKKQIELQGI------SGEDVERMNLERNKLKRELNKIQSELDRL  358 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCC------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555443   35555543221      22       44555555555555444444

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=85.65  E-value=28  Score=43.64  Aligned_cols=109  Identities=18%  Similarity=0.153  Sum_probs=66.4

Q ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHH-----HHHHHHHHHHHHHHHHHHH
Q psy2772         417 GVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVE-----RYRRQQRLLERELSRVRSI  491 (746)
Q Consensus       417 ~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~E-----Ki~~QQrlLE~eLsrVRae  491 (746)
                      ...+..-.....+-.-+...+..+..++++.+.||.-+..++.+++...++|++-.     .++.|=+.+++.+......
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~l~~~~~~l~~~~a~~~~~eL~el~~ql~~~~~~a~~~~~~  355 (1353)
T TIGR02680       276 TQYDQLSRDLGRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAEALQAAAADARQA  355 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444555666667777777788888888888889999998888732     2223444444455555555


Q ss_pred             HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772         492 LAHNSKKLEETVAANARLESELVVLRQKLQWSRR  525 (746)
Q Consensus       492 LSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~  525 (746)
                      +...-..+++.-.+..+++..+..+...|++.++
T Consensus       356 ~~~a~~~~e~~~~~~~~~~~r~~~~~~~l~~~~~  389 (1353)
T TIGR02680       356 IREAESRLEEERRRLDEEAGRLDDAERELRAARE  389 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555566666666666666666666555543

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>KOG0933|consensus

Probab=85.64  E-value=21  Score=44.09  Aligned_cols=104  Identities=16%  Similarity=0.192  Sum_probs=68.1

Q ss_pred             hhhhhhhhhhhhhhhhhh---hhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHH--------HHHHHHHHHHHH
Q psy2772         422 AISRDQIASKLHSRGRNI---CSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQ--------RLLERELSRVRS  490 (746)
Q Consensus       422 klSr~ce~dKilqelE~k---Lq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQ--------rlLE~eLsrVRa  490 (746)
                      .+||+|++-.-++..+-+   .-.+.+.|+.+....+.+.+-+....+=--.+.+|.+|+        +.|+..|...+.
T Consensus       229 ~l~R~~ia~eY~~~~~~~~~~~~~i~e~~~~i~~l~e~~~k~~~ei~~le~~ikei~~~rd~em~~~~~~L~~~~~~~~~  308 (1174)
T KOG0933|consen  229 RLSRICIAYEYLQAEEKRKNSAHEIEEMKDKIAKLDESLGKTDKEIESLEKEIKEIEQQRDAEMGGEVKALEDKLDSLQN  308 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHH
Confidence            578888887755544332   233444555555544444333322222222233333332        589999999999


Q ss_pred             HHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Q psy2772         491 ILAHNSKKLEETVAANARLESELVVLRQKLQWSRR  525 (746)
Q Consensus       491 eLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~  525 (746)
                      ++.+.++.+..........|.++..++..+.+++.
T Consensus       309 ~~tr~~t~l~~~~~tl~~e~~k~e~i~~~i~e~~~  343 (1174)
T KOG0933|consen  309 EITREETSLNLKKETLNGEEEKLEEIRKNIEEDRK  343 (1174)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHH
Confidence            99999999999999999999999988888877664

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=85.23  E-value=30  Score=39.12  Aligned_cols=95  Identities=19%  Similarity=0.232  Sum_probs=53.9

Q ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHH---HHHHHHhHhhhccCCChHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772         427 QIASKLHSRGRNICSVQGQAKEMLE---NALGSLRHKMHGVHASPAEVE-RYRRQQRLLERELSRVRSILAHNSKKLEET  502 (746)
Q Consensus       427 ce~dKilqelE~kLq~Lk~DKD~LE---sAL~~L~qqME~~~dqPa~~E-Ki~~QQrlLE~eLsrVRaeLSrnSkELE~t  502 (746)
                      .+..+-+..|...+...++-+-+|.   .-+..|+.+|..+..+....+ .....-..++..|.++..+|...-..|+.+
T Consensus       221 eeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~  300 (522)
T PF05701_consen  221 EEAEEELEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKA  300 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666666655555555555   446677788888776322211 122333445555666666666666666666


Q ss_pred             HHHHhhhHHHHHHHHHHHH
Q psy2772         503 VAANARLESELVVLRQKLQ  521 (746)
Q Consensus       503 waEyaRLE~EV~~LRqkLQ  521 (746)
                      -+|-..|-..|.-||..|.
T Consensus       301 k~E~~~L~~~vesL~~ELe  319 (522)
T PF05701_consen  301 KEEASSLRASVESLRSELE  319 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666655555555554

Several sequences in this family are described as being myosin heavy chain-like.

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=84.80  E-value=8.4  Score=47.58  Aligned_cols=74  Identities=15%  Similarity=0.125  Sum_probs=38.5

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHhhhHHH
Q psy2772         436 GRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHN-SKKLEETVAANARLESE  512 (746)
Q Consensus       436 lE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrn-SkELE~twaEyaRLE~E  512 (746)
                      +......|+...+.+|..|.+..+..+=++-+   .+-...|+..||.++..++..|++- =++-|++.++-.++..+
T Consensus       178 lqae~~~l~~~~~~l~~~l~s~~~~~~L~~~q---~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~  252 (1109)
T PRK10929        178 LQAESAALKALVDELELAQLSANNRQELARLR---SELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQ  252 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence            34455567777777777777666655544433   1223333333444444444444332 24555666666666333

>cd09237 V_ScBro1_like Protein-interacting V-domain of Saccharomyces cerevisiae Bro1 and related domains

Probab=84.53  E-value=22  Score=37.92  Aligned_cols=149  Identities=11%  Similarity=0.110  Sum_probs=86.7

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy2772         426 DQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAA  505 (746)
Q Consensus       426 ~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaE  505 (746)
                      +...+++.+.....|..-.++-+.=++.-..+|.+.-..|..|.-....    ..|..++..+|.-|.+.+.-=+....-
T Consensus        75 ~~~l~~l~~~~~~~l~~~~~~L~~E~~ed~~~R~k~g~~Wtr~~S~~~~----~~l~~~~~k~~~~L~~A~~SD~~l~~~  150 (356)
T cd09237          75 LELLRPQSASWVNEIDSSYNDLDEEMKEIEKMRKKILAKWTQSPSSSLT----ASLREDLVKLKKSLVEASASDEKLFSL  150 (356)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhh----HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            3344455555555555545554554555556777754445443222221    267788999999998888666666666


Q ss_pred             HhhhHHHHHHHHHHHHHHHhh---hcc--CC-CCCC--CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy2772         506 NARLESELVVLRQKLQWSRRE---VCN--GT-ASLS--NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNS  577 (746)
Q Consensus       506 yaRLE~EV~~LRqkLQaQr~~---~~~--~~-~~~~--~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~  577 (746)
                      |...+.++.+|......-..-   .+.  .. ..+|  ..+..+.+...+++++.++..|..-+.+=..-+..|.++++.
T Consensus       151 ~~~~~~~l~lL~~~~~~l~~~~~~p~~~~~~~slld~d~~~~~~~~~~~i~~L~~ll~~l~~lk~eR~~~~~~Lk~k~~~  230 (356)
T cd09237         151 VDPVKEDIALLLNGGSLWEELFGFSSSGSPEPSLLDLDDSQNEQTVLKQIKQLEELLEDLNLIKEERQRVLKDLKQKIHN  230 (356)
T ss_pred             HHHHHHHHHHHcCChHHHHHHhcCCCCCCCCCcccCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            666777888886544432221   111  00 1111  112222367788999999888887777777777777666554


Q ss_pred             c
Q psy2772         578 L  578 (746)
Q Consensus       578 l  578 (746)
                      -
T Consensus       231 D  231 (356)
T cd09237         231 D  231 (356)
T ss_pred             c
Confidence            3

This family contains the V-shaped (V) domain of Saccharomyces cerevisiae Bro1, and related domains. It belongs to the V_Alix_like superfamily which also includes the V-domain of Saccharomyces cerevisiae Rim20 (also known as PalA), mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), and related domains. Bro1 interacts with the ESCRT (Endosomal Sorting Complexes Required for Transport) system, and participates in endosomal trafficking. The mammalian Alix V-domain (belonging to a different family) contains a binding site, partially conserved in the superfamily, for the retroviral late assembly (L) domain YPXnL motif. The Alix V-domain is also a dimerization domain. Bro1 also has an N-terminal Bro1-like domain, which binds Snf7, a component of the ESCRT-III complex, and a C-terminal proline-rich

>PF01544 CorA: CorA-like Mg2+ transporter protein; InterPro: IPR002523 The CorA transport system is the primary Mg2+ influx system of Salmonella typhimurium and Escherichia coli [, ]

Probab=84.12  E-value=32  Score=33.77  Aligned_cols=61  Identities=23%  Similarity=0.219  Sum_probs=37.8

Q ss_pred             hhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2772         428 IASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLE  500 (746)
Q Consensus       428 e~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE  500 (746)
                      ..+.++......+..+.++-+.||..+        ....++.....+..    |+++|.++|..+...-.-+.
T Consensus       115 il~~~~~~~~~~l~~l~~~l~~le~~~--------~~~~~~~~~~~l~~----l~~~l~~l~~~l~~~~~~l~  175 (292)
T PF01544_consen  115 ILDEIVDDYFEVLEELEDELDELEDEL--------DDRPSNELLRELFD----LRRELSRLRRSLSPLREVLQ  175 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH--------THTTTHHHCCHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhc--------ccccchhhHHHHHH----HHHHHHHHHHHhhhHHHHHH
Confidence            456677777777777777777777766        22233444444433    66777777777666554444

CorA is virtually ubiquitous in the Bacteria and Archaea. There are also eukaryotic relatives of this protein. Transporter ZntB mediates efflux of zinc ions [].; GO: 0046873 metal ion transmembrane transporter activity, 0030001 metal ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2HN1_A 3NWI_D 3NVO_B 3CK6_A 2IUB_E 2BBJ_E 2HN2_A 2BBH_A.

>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A)

Probab=84.08  E-value=26  Score=35.81  Aligned_cols=105  Identities=13%  Similarity=0.145  Sum_probs=68.8

Q ss_pred             eeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         413 RIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSIL  492 (746)
Q Consensus       413 ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeL  492 (746)
                      ++..||+..+|...... .-+...+..+..++.....++..+..+..++....   +.++.+..+-...+.++.|...+.
T Consensus        63 ~V~kGq~L~~ld~~~~~-~~l~~a~a~l~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~a~~~l~~a~~~~~r~~~L~  138 (334)
T TIGR00998        63 YVKQGDVLVRLDPTNAE-LALAKAEANLAALVRQTKQLEITVQQLQAKVESLK---IKLEQAREKLLQAELDLRRRVPLF  138 (334)
T ss_pred             EEcCCCEEEEECchHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHH
Confidence            44566777777644332 23455566666666666666665555555554332   456667777778888888888887


Q ss_pred             Hhhh---HHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772         493 AHNS---KKLEETVAANARLESELVVLRQKLQ  521 (746)
Q Consensus       493 SrnS---kELE~twaEyaRLE~EV~~LRqkLQ  521 (746)
                      .+..   .+++++-.+|...+.++..+++.++
T Consensus       139 ~~g~is~~~~~~a~~~~~~a~~~l~~~~~~~~  170 (334)
T TIGR00998       139 KKGLISREELDHARKALLSAKAALNAAIQEQL  170 (334)
T ss_pred             HCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7763   6788888888888888777776433

>PRK10476 multidrug resistance protein MdtN; Provisional

Probab=83.83  E-value=37  Score=35.45  Aligned_cols=106  Identities=16%  Similarity=0.204  Sum_probs=55.8

Q ss_pred             eeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         413 RIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSIL  492 (746)
Q Consensus       413 ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeL  492 (746)
                      ++..+|+..+|.....+ --+...+..+...+...+.++.-+..-..+++.   .-+.+++.+.+..+.++++.|.+.++
T Consensus        69 ~VkkGq~L~~ld~~~~~-~~l~~a~a~l~~a~a~l~~~~~~~~~~~~~~~~---~~~~i~~a~~~l~~a~~~~~R~~~L~  144 (346)
T PRK10476         69 AVKKGDLLFRIDPRPYE-LTVAQAQADLALADAQIMTTQRSVDAERSNAAS---ANEQVERARANAKLATRTLERLEPLL  144 (346)
T ss_pred             EEcCCCEEEEECcHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567777777643222 123333344443333333332222211111111   11234445555666677777777777


Q ss_pred             Hhhh---HHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772         493 AHNS---KKLEETVAANARLESELVVLRQKLQW  522 (746)
Q Consensus       493 SrnS---kELE~twaEyaRLE~EV~~LRqkLQa  522 (746)
                      .+..   .++|++-.+|...+.++..++..+..
T Consensus       145 ~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~  177 (346)
T PRK10476        145 AKGYVSAQQVDQARTAQRDAEVSLNQALLQAQA  177 (346)
T ss_pred             HCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6653   67777777777777777776666553

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=83.38  E-value=39  Score=33.63  Aligned_cols=19  Identities=26%  Similarity=0.559  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy2772         553 LVGDLQRQRQELSAQVKQL  571 (746)
Q Consensus       553 VvggLsrQRqeLs~qVrqL  571 (746)
                      +-..+...|..|-+++..+
T Consensus       138 l~~~l~~~r~~l~~~l~~i  156 (302)
T PF10186_consen  138 LQSQLARRRRQLIQELSEI  156 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4444556666666665554

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>TIGR02680 conserved hypothetical protein TIGR02680

Probab=83.12  E-value=32  Score=43.17  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772         543 LEAELRRVQALVGDLQRQRQELSAQVKQLT  572 (746)
Q Consensus       543 LekELwRIQdVvggLsrQRqeLs~qVrqLt  572 (746)
                      ++.+|..+..=+..+.+++.++..++..+.
T Consensus       926 l~a~L~e~r~rL~~l~~el~~~~~~~~~a~  955 (1353)
T TIGR02680       926 IRARLAETRAALASGGRELPRLAEALATAE  955 (1353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444444444444444444444333333

Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.

>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

Probab=82.25  E-value=26  Score=38.24  Aligned_cols=84  Identities=23%  Similarity=0.238  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHhhhHHHHHHH-HHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHH
Q psy2772         482 ERELSRVRSILAHNSKKLEETV-AANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQ  560 (746)
Q Consensus       482 E~eLsrVRaeLSrnSkELE~tw-aEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQ  560 (746)
                      ++++.-++..+....+.+...- +++..|++.+..|.+.+..-.......   ....++-..|++|+.-.+.+.+.|-.+
T Consensus       319 ~~q~~~~~~~~~~e~~~~~~~~~~~~~~l~~~~~~L~~~~~~l~~~~~~~---~~~~~~l~~L~Re~~~~r~~ye~lL~r  395 (458)
T COG3206         319 EAQLAELRQQIAAELRQILASLPNELALLEQQEAALEKELAQLKGRLSKL---PKLQVQLRELEREAEAARSLYETLLQR  395 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHhhc---hHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444443333332 234555555555554444222111110   012356677888888888888888888


Q ss_pred             HHHHHHHH
Q psy2772         561 RQELSAQV  568 (746)
Q Consensus       561 RqeLs~qV  568 (746)
                      ++|+..+-
T Consensus       396 ~qe~~~~~  403 (458)
T COG3206         396 YQELSIQE  403 (458)
T ss_pred             HHHHHHhh
Confidence            88887765

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]

Probab=82.08  E-value=49  Score=37.68  Aligned_cols=28  Identities=18%  Similarity=0.169  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772         557 LQRQRQELSAQVKQLTEKSNSLSQQIRP  584 (746)
Q Consensus       557 LsrQRqeLs~qVrqLt~~s~~l~~qi~~  584 (746)
                      +..++|.+.+...|+-.+.+.+.|+|--
T Consensus       222 r~aa~Qq~~q~i~qrd~~i~q~~q~iaa  249 (499)
T COG4372         222 RAAAAQQTAQAIQQRDAQISQKAQQIAA  249 (499)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455666666777777777777777643

>KOG0962|consensus

Probab=81.35  E-value=41  Score=42.58  Aligned_cols=227  Identities=16%  Similarity=0.192  Sum_probs=134.8

Q ss_pred             CCCCceEEEecCCCCc-cchhhhhhhhcccc--CcccccceeEEEE----------Eeee-----ccccccccc------
Q psy2772         338 HMPSPAIVATTGSGPF-LGYPKSDNIILPRK--QHLFLDSVIWYIS----------LLEV-----YRLGGPLAC------  393 (746)
Q Consensus       338 ~fp~kvaIQiNDTHPs-LaIPELmRIL~de~--gl~wdeAv~wdIt----------~aYT-----NHTILpEAL------  393 (746)
                      ..--.|..+.||.|-. |++|--|-+..-..  .+.+.+.|+|.|.          |+-.     -|.+.+-|.      
T Consensus        75 ev~AqvkL~f~~~~G~~~~~~R~~qlt~k~~~~~~ktles~~~~~~~g~k~tlS~r~~d~d~~~~~~lGVskAIl~~VIF  154 (1294)
T KOG0962|consen   75 EVRAQVKLAFTDVNGETMICTRTIQLTQKRTKMEFKTLESVIWAINDGDRVTLSGRSADLDAEMPLHLGVSKAILENVIF  154 (1294)
T ss_pred             hhhheeeeeeecCCCcEEEeehhhHHHHHHHHHHHHHHhhhheeeecCccccccchhhhhhHHHHHhcCCcHHHHhhhhe
Confidence            3444567778888754 55566665554322  4556666667664          2211     122222222      


Q ss_pred             -----cccccccccccccC------CCCcceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhh
Q psy2772         394 -----GPWKVHAELPIRVR------PVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMH  462 (746)
Q Consensus       394 -----EkWpv~~~l~irvr------p~~p~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME  462 (746)
                           -.||..=-.-++-+      -.++++  --|..-|+-.+|.++  ++..+..|..|+.+|+.-|..=...|+-..
T Consensus       155 cHQEdS~WPLsEp~~LKkkfD~IF~~tky~K--Ald~~kk~rkd~~~e--vk~~~~~l~~lk~~K~~~e~~~l~i~~~~~  230 (1294)
T KOG0962|consen  155 CHQEDSTWPLSEPKNLKKKFDDIFSATKYTK--ALDSLKKLRKDQSQE--VKTKKQELEHLKTLKERAEVLRLNIHSGQR  230 (1294)
T ss_pred             ecccCCCCCCCChHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 13665422211110      001111  124455666666665  344455566677677666666666666666


Q ss_pred             ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhc-cCCCCCC------
Q psy2772         463 GVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC-NGTASLS------  535 (746)
Q Consensus       463 ~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~-~~~~~~~------  535 (746)
                      ++......++++..+-+-.++.+.-||-.    .++++++-.+-.+|+.+...+...+..++.... ....+..      
T Consensus       231 ki~~~ke~v~e~e~e~~~~~~~i~ei~~~----~~el~k~~~~~~~l~~e~~~l~~~~~~l~~~i~~~~~~t~~~l~~~~  306 (1294)
T KOG0962|consen  231 KIEKSKEEVSELENELGPIEAKIEEIEKS----LKELEKLLKQVKLLDSEHKNLKKQISRLREKILKIFDGTDEELGELL  306 (1294)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchHHHHHHH
Confidence            66666677777777777777766666544    478888888899999999888888887775422 0000000      


Q ss_pred             --CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2772         536 --NGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLT  572 (746)
Q Consensus       536 --~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt  572 (746)
                        +.+....++..+.+++-=+++|..+|..|+++-..|.
T Consensus       307 ~n~~~~~~~~~~~~~~~e~~~~~l~~e~~~l~~~k~~~~  345 (1294)
T KOG0962|consen  307 SNFEERLEEMGEKLRELEREISDLNEERSSLIQLKTELD  345 (1294)
T ss_pred             HhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1245555777888888888899988888888766655

>KOG1853|consensus

Probab=80.75  E-value=30  Score=37.44  Aligned_cols=82  Identities=21%  Similarity=0.174  Sum_probs=55.8

Q ss_pred             hhhhhhhhhhhhh----hHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHh-----------hhH
Q psy2772         433 HSRGRNICSVQGQ----AKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAH-----------NSK  497 (746)
Q Consensus       433 lqelE~kLq~Lk~----DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSr-----------nSk  497 (746)
                      .++++...|.|+-    .||++|.----.-+|+.+-.++-.++..|..|++--=++|-.---.|-+           --.
T Consensus        61 nrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeq  140 (333)
T KOG1853|consen   61 NRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQ  140 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHH
Confidence            4567777777765    4666666555555678888899999999999998877777654333322           124


Q ss_pred             HHHHHHHHHhhhHHHHH
Q psy2772         498 KLEETVAANARLESELV  514 (746)
Q Consensus       498 ELE~twaEyaRLE~EV~  514 (746)
                      +|-+|...||=||.||.
T Consensus       141 rLnqAIErnAfLESELd  157 (333)
T KOG1853|consen  141 RLNQAIERNAFLESELD  157 (333)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            56667777777777765

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=80.59  E-value=40  Score=40.15  Aligned_cols=37  Identities=14%  Similarity=-0.070  Sum_probs=16.4

Q ss_pred             eecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHHHHH
Q psy2772         415 RIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLE  451 (746)
Q Consensus       415 ~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD~LE  451 (746)
                      ....+..++.++++..+=+.+++..+..+....+.++
T Consensus       282 ~~~~~~~~~~~L~~~~~e~~~~~~~~~~~~~~~~~~~  318 (908)
T COG0419         282 LLEELEEKIERLEELEREIEELEEELEGLRALLEELE  318 (908)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444555555555544444444444333333333

>PRK11281 hypothetical protein; Provisional

Probab=80.40  E-value=53  Score=41.02  Aligned_cols=31  Identities=29%  Similarity=0.408  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772         554 VGDLQRQRQELSAQVKQLTEKSNSLSQQIRP  584 (746)
Q Consensus       554 vggLsrQRqeLs~qVrqLt~~s~~l~~qi~~  584 (746)
                      .+=++.||..+..++.++...-..|+..|+.
T Consensus       222 ~~l~~~q~d~~~~~~~~~~~~~~~lq~~in~  252 (1113)
T PRK11281        222 QDLLQKQRDYLTARIQRLEHQLQLLQEAINS  252 (1113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666666666665555555555544

>KOG0976|consensus

Probab=80.27  E-value=30  Score=42.23  Aligned_cols=36  Identities=22%  Similarity=0.065  Sum_probs=22.3

Q ss_pred             ceeeecchhhhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy2772         412 IRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKE  448 (746)
Q Consensus       412 ~ri~e~d~d~klSr~ce~dKilqelE~kLq~Lk~DKD  448 (746)
                      -+|.|-|||+-.|-..+..| |++++.+-+.|.++|-
T Consensus       252 s~i~E~d~~lq~sak~ieE~-m~qlk~kns~L~~ElS  287 (1265)
T KOG0976|consen  252 SMIEEQDMDLQASAKEIEEK-MRQLKAKNSVLGDELS  287 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhh
Confidence            36888999998887666554 3445544444444443

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=80.01  E-value=1.2e+02  Score=34.68  Aligned_cols=103  Identities=23%  Similarity=0.195  Sum_probs=69.8

Q ss_pred             hhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Q psy2772         430 SKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARL  509 (746)
Q Consensus       430 dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRL  509 (746)
                      +++..=+......+.+..+.|+.+|..+...          -+.|+.||..|+.-+...+.+..+....+++--....+|
T Consensus       146 ~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~----------~~~iaaeq~~l~~~~~eq~~q~~kl~~~~~E~kk~~~~l  215 (420)
T COG4942         146 VRLAIYYGALNPARAERIDALKATLKQLAAV----------RAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL  215 (420)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455566677777778888877776543          456778888888888888888877776666666666666


Q ss_pred             HHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH
Q psy2772         510 ESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG  555 (746)
Q Consensus       510 E~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg  555 (746)
                      +.++...+++|.+-..             ....|+.++-+++.=.+
T Consensus       216 ~~~l~~~q~~l~eL~~-------------~~~~L~~~Ias~e~~aA  248 (420)
T COG4942         216 NSELSADQKKLEELRA-------------NESRLKNEIASAEAAAA  248 (420)
T ss_pred             HHHHHHHHHHHHHHHh-------------HHHHHHHHHHHHHHHHH
Confidence            6666666666665443             34457777777775444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	746
2zb2_A	849	Human Liver Glycogen Phosphorylase A Complexed With		2e-19
1xoi_A	846	Human Liver Glycogen Phosphorylase A Complexed With		2e-19
1em6_A	847	Human Liver Glycogen Phosphorylase A Complexed With		2e-19
1fc0_A	846	Human Liver Glycogen Phosphorylase Complexed With N		2e-19
1fa9_A	846	Human Liver Glycogen Phosphorylase A Complexed With		2e-19
3dds_A	848	Crystal Structure Of Glycogen Phosphorylase Complex		2e-19
2qll_A	847	Human Liver Glycogen Phosphorylase- Gl Complex Leng		2e-19
3ceh_A	809	Human Liver Glycogen Phosphorylase (Tense State) In		2e-19
1z6p_A	842	Glycogen Phosphorylase Amp Site Inhibitor Complex L		9e-19
1z8d_A	842	Crystal Structure Of Human Muscle Glycogen Phosphor		9e-19
2pyd_A	843	The Crystal Structure Of Glycogen Phosphorylase In		9e-19
2g9q_A	842	The Crystal Structure Of The Glycogen Phosphorylase		9e-19
7gpb_A	842	Structural Mechanism For Glycogen Phosphorylase Con		9e-19
1noi_A	842	Complex Of Glycogen Phosphorylase With A Transition		9e-19
3nc4_A	841	The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbaz		9e-19
1gpa_A	842	Structural Mechanism For Glycogen Phosphorylase Con		9e-19
1pyg_A	842	Structural Basis For The Activation Of Glycogen Pho		9e-19
1c8l_A	842	Synergistic Inhibition Of Glycogen Phosphorylase A		9e-19
4ej2_A	825	Crystal Structure Of Gpb In Complex With Dk10 Lengt		1e-18
1abb_A	828	Control Of Phosphorylase B Conformation By A Modifi		1e-18
2gm9_A	825	Structure Of Rabbit Muscle Glycogen Phosphorylase I		1e-18
2gj4_A	824	Structure Of Rabbit Muscle Glycogen Phosphorylase I		1e-18
2ffr_A	825	Crystallographic Studies On N-Azido-Beta-D-Glucopyr		1e-18
1c50_A	830	Identification And Structural Characterization Of A		1e-18
1ygp_B	879	Phosphorylated Form Of Yeast Glycogen Phosphorylase		1e-10
1l5v_A	796	Crystal Structure Of The Maltodextrin Phosphorylase		2e-08
2ecp_A	796	The Crystal Structure Of The E. Coli Maltodextrin P		3e-08
1ahp_A	797	Oligosaccharide Substrate Binding In Escherichia Co		3e-08
1qm5_A	796	Phosphorylase Recognition And Phosphorylysis Of Its		7e-08
2c4m_A	796	Starch Phosphorylase: Structural Studies Explain Ox		4e-07

>pdb|2ZB2|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcose And 5- Chloro-N-[4-(1, 2-Dihydroxyethyl)phenyl]-1h-Indole-2-Carboxamide Length = 849

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 257 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 315

>pdb|1XOI|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Chloroindoloyl Glycine Amide Length = 846

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|1EM6|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Glcnac And Cp-526, 423 Length = 847

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

>pdb|1FC0|A Chain A, Human Liver Glycogen Phosphorylase Complexed With N-Acetyl-Beta-D- Glucopyranosylamine Length = 846

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|1FA9|A Chain A, Human Liver Glycogen Phosphorylase A Complexed With Amp Length = 846

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|3DDS|A Chain A, Crystal Structure Of Glycogen Phosphorylase Complexed With An Anthranilimide Based Inhibitor Gsk261 Length = 848

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 256 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 314

>pdb|2QLL|A Chain A, Human Liver Glycogen Phosphorylase- Gl Complex Length = 847

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

>pdb|3CEH|A Chain A, Human Liver Glycogen Phosphorylase (Tense State) In Complex With The Allosteric Inhibitor Ave5688 Length = 809

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 49/59 (83%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           L+  N GDYIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 232 LRDFNVGDYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 290

>pdb|1Z6P|A Chain A, Glycogen Phosphorylase Amp Site Inhibitor Complex Length = 842

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|1Z8D|A Chain A, Crystal Structure Of Human Muscle Glycogen Phosphorylase A With Amp And Glucose Length = 842

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

>pdb|2PYD|A Chain A, The Crystal Structure Of Glycogen Phosphorylase In Complex With Glucose At 100 K Length = 843

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 255 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 313

>pdb|2G9Q|A Chain A, The Crystal Structure Of The Glycogen Phosphorylase B- 1ab Complex Length = 842

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|7GPB|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|1NOI|A Chain A, Complex Of Glycogen Phosphorylase With A Transition State Analogue Nojirimycin Tetrazole And Phosphate In The T And R States Length = 842

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|3NC4|A Chain A, The Binding Of Beta-D-Glucopyranosyl-Thiosemicarbazone Derivatives To Glycogen Phosphorylase: A New Class Of Inhibitors Length = 841

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 253 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 311

>pdb|1GPA|A Chain A, Structural Mechanism For Glycogen Phosphorylase Control By Phosphorylation And Amp Length = 842

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|1PYG|A Chain A, Structural Basis For The Activation Of Glycogen Phosphorylase B By Adenosine Monophosphate Length = 842

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|1C8L|A Chain A, Synergistic Inhibition Of Glycogen Phosphorylase A By A Potential Antidiabetic Drug And Caffeine Length = 842

Iteration: 1
 Score = 92.0 bits (227), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 254 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 312

>pdb|4EJ2|A Chain A, Crystal Structure Of Gpb In Complex With Dk10 Length = 825

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 243 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 301

>pdb|1ABB|A Chain A, Control Of Phosphorylase B Conformation By A Modified Cofactor: Crystallographic Studies On R-State Glycogen Phosphorylase Reconstituted With Pyridoxal 5'-Diphosphate Length = 828

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 245 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 303

>pdb|2GM9|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Thienopyrrole Length = 825

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 243 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 301

>pdb|2GJ4|A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand Length = 824

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 243 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 301

>pdb|2FFR|A Chain A, Crystallographic Studies On N-Azido-Beta-D-Glucopyranosylamine, An Inhibitor Of Glycogen Phosphorylase: Comparison With N-Acetyl-Beta-D- Glucopyranosylamine Length = 825

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 243 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 301

>pdb|1C50|A Chain A, Identification And Structural Characterization Of A Novel Allosteric Binding Site Of Glycogen Phosphorylase B Length = 830

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 47/59 (79%), Positives = 48/59 (81%)
Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFK 311
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK
Sbjct: 242 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFK 300

>pdb|1L5V|A Chain A, Crystal Structure Of The Maltodextrin Phosphorylase Complexed With Glucose-1-Phosphate Length = 796

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 36/51 (70%)
Query: 256 VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVI 306
            NDGD+++A      AE +++VLYPNDN F GK+LRL Q+YF CA ++  I
Sbjct: 233 FNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADI 283

>pdb|2ECP|A Chain A, The Crystal Structure Of The E. Coli Maltodextrin Phosphorylase Complex Length = 796

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 15/93 (16%)
Query: 256 VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGR 315
            NDGD+++A      AE +++VLYPNDN+  GK+LRL Q+YF CA ++  I         
Sbjct: 233 FNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADI--------- 283
Query: 316 ALLGYSHSSGREVSK----SVVRHTKHMPSPAI 344
             L   H +GRE+ +     V++     P+ AI
Sbjct: 284 --LRRHHLAGRELHELADYEVIQLNDTHPTIAI 314

>pdb|1AHP|A Chain A, Oligosaccharide Substrate Binding In Escherichia Coli Maltodextrin Phsphorylase Length = 797

Iteration: 1
 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 51/93 (54%), Gaps = 15/93 (16%)
Query: 256 VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKDQGR 315
            NDGD+++A      AE +++VLYPNDN+  GK+LRL Q+YF CA ++  I         
Sbjct: 234 FNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADI--------- 284
Query: 316 ALLGYSHSSGREVSK----SVVRHTKHMPSPAI 344
             L   H +GRE+ +     V++     P+ AI
Sbjct: 285 --LRRHHLAGRELHELADYEVIQLNDTHPTIAI 315

>pdb|1QM5|A Chain A, Phosphorylase Recognition And Phosphorylysis Of Its Oligosaccharide Substrate: Answers To A Long Outstanding Question Length = 796

Iteration: 1
 Score = 56.2 bits (134), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 256 VNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVI 306
            NDGD+++A      AE +++VLYPNDN+  GK+LRL Q+YF CA ++  I
Sbjct: 233 FNDGDFLRAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADI 283

>pdb|2C4M|A Chain A, Starch Phosphorylase: Structural Studies Explain Oxyanion- Dependent Kinetic Stability And Regulatory Control. Length = 796

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 249 EKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVI 306
           E+      N   +  A+++R    +I RVLYPND  + GK+LR++Q+YF  +A+LQ +
Sbjct: 216 EEFDYDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAM 273

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	746
2gj4_A	824	Glycogen phosphorylase, muscle form; transferase;	6e-27
1l5w_A	796	Maltodextrin phosphorylase; enzymatic catalysis, s	2e-26
2c4m_A	796	Glycogen phosphorylase; allosteric control, phosph	3e-26
1ygp_A	879	Yeast glycogen phosphorylase; phosphorylated form,	1e-25
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-06
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	5e-06
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	7e-05
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	7e-05
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	7e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	9e-04

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ... Length = 824

 Score =  116 bits (292), Expect = 6e-27
 Identities = 54/96 (56%), Positives = 57/96 (59%), Gaps = 5/96 (5%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
           LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ I   FK 
Sbjct: 243 LKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQDIIRRFKS 302

Query: 313 QGRALLGYSHSSGREVSKSVVRH---TKHMPSPAIV 345
                     ++       V      T H PS AI 
Sbjct: 303 SKFGCRDPVRTNFDAFPDKVAIQLNDT-H-PSLAIP 336

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A* Length = 796

 Score =  114 bits (288), Expect = 2e-26
 Identities = 30/65 (46%), Positives = 40/65 (61%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
           L   NDGD+++A      AE +++VLYPNDN F GK+LRL Q+YF CA ++  I      
Sbjct: 230 LTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVADILRRHHL 289

Query: 313 QGRAL 317
            GR L
Sbjct: 290 AGRKL 294

>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae} Length = 796

 Score =  114 bits (287), Expect = 3e-26
 Identities = 22/65 (33%), Positives = 36/65 (55%)

Query: 253 LKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQVISLPFKD 312
               N   +  A+++R    +I RVLYPND  + GK+LR++Q+YF  +A+LQ +      
Sbjct: 220 YDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQAMIQDHLA 279

Query: 313 QGRAL 317
             + L
Sbjct: 280 HHKDL 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 7e-09
 Identities = 75/603 (12%), Positives = 170/603 (28%), Gaps = 192/603 (31%)

Query: 36  ELRRVQALVGDLQRQRQELSAQVKQLTEKS-----NSLSQQIRPGPTGVAGKSAQGSTSP 90
            +     L   L  +++E    V++  E+        L   I+                P
Sbjct: 60  AVSGTLRLFWTLLSKQEE---MVQKFVEEVLRINYKFLMSPIKTEQRQ-----------P 105

Query: 91  SGRSTAAETGTERTGQTADGEIQLF--------ESADQARTH---WSSGPGST--GVAGK 137
           S  +       +R       + Q+F        +   + R               GV G 
Sbjct: 106 SMMTRMYIEQRDRL----YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG- 160

Query: 138 SAQGSTSPSGRST-AAET-GTERTGQTADGEIQLFESADQARTHWSNPG-------LMCI 188
                   SG++  A +   + +     D +I            W N         ++ +
Sbjct: 161 --------SGKTWVALDVCLSYKVQCKMDFKI-----------FWLNLKNCNSPETVLEM 201

Query: 189 LSSYVY-----YCVLSAYIRYVSARLADLETPKRMEHLQKLEELKRHLVEL----EKQVS 239
           L   +Y     +   S +   +  R+  ++   R   L K +  +  L+ L      +  
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR--RLLKSKPYENCLLVLLNVQNAKAW 259

Query: 240 ITFN------LTERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPND------NNFGG 287
             FN      LT R +++   F++        L     ++ S  L P++           
Sbjct: 260 NAFNLSCKILLTTRFKQV-TDFLSAATTTHISL-----DHHSMTLTPDEVKSLLLKYLDC 313

Query: 288 KELRLKQEYFMCAATLQVISLPFKDQGRALLGYSHSSGREVSKSVVR--HTKHMPSPAIV 345
           +   L +E  +     + +S+                   +   +    + KH+    + 
Sbjct: 314 RPQDLPRE--VLTTNPRRLSI---------------IAESIRDGLATWDNWKHVNCDKLT 356

Query: 346 ATTGSGPFLGYPKSDNIILPRKQHLFLDSVIW----YIS--LLEVYRLGGPLACGPWKVH 399
               S   L   +         + +F    ++    +I   LL +           W   
Sbjct: 357 TIIES--SLNVLEPAEY-----RKMFDRLSVFPPSAHIPTILLSLI----------W--- 396

Query: 400 AELPIRVRPVSPIRIRIGVMIHAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRH 459
            ++               VM        + +KLH        V+ Q KE           
Sbjct: 397 FDVIKSD-----------VM-------VVVNKLHKY----SLVEKQPKES--------TI 426

Query: 460 KMHGVH---ASPAE---------VERYRRQQRLLERELSRVR------SILAHNSKKLEE 501
            +  ++       E         V+ Y   +     +L          S + H+ K +E 
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE- 485

Query: 502 TVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQR 561
               +    +   ++    ++  +++ + + + +   S+     +L+  +  + D   + 
Sbjct: 486 ----HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 562 QEL 564
           + L
Sbjct: 542 ERL 544

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 1e-06
 Identities = 41/260 (15%), Positives = 73/260 (28%), Gaps = 85/260 (32%)

Query: 448 EMLENALGS--LRHKMHGVHASPAEVERYRRQQRLLERELSR-----VRSILAHNSKKLE 500
           +M ++ L    + H    +  S   V    R    L  +        V  +L  N K L 
Sbjct: 40  DMPKSILSKEEIDH----IIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 501 ETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQ 560
             +    R  S    +  ++   +R+       L N   V                    
Sbjct: 96  SPIKTEQRQPS----MMTRMYIEQRDR------LYNDNQV-------------FAKYNVS 132

Query: 561 RQELSAQVKQLTEKSNSLSQQIRPGPTGVAV-----AGKSVNRPGPTGVAGKVSKSGLDP 615
           R +      +L +    L  ++RP    V +     +GK+        VA  V  S    
Sbjct: 133 RLQ---PYLKLRQA---L-LELRPAK-NVLIDGVLGSGKTW-------VALDVCLS---- 173

Query: 616 TGVAVDTRIPNPCSLSLGLYPWDDTEDSSDGAGPVGAKRKTSHGWLETDLDMNSTLDVAI 675
               V  ++         ++ W +          +           ET L+M   L   I
Sbjct: 174 --YKVQCKMDF------KIF-WLN----------LKNCNSP-----ETVLEMLQKLLYQI 209

Query: 676 ESPCISYPSSPQHMTSSPLP 695
           +     + S   H ++  L 
Sbjct: 210 DPN---WTSRSDHSSNIKLR 226

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.0 bits (122), Expect = 1e-06
 Identities = 30/158 (18%), Positives = 61/158 (38%), Gaps = 10/158 (6%)

Query: 425  RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERE 484
            ++ +  KL +          +A+EM        +     +H   A +E    + + L+ E
Sbjct: 894  KNLLQEKLQAETEL----YAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAE 949

Query: 485  LSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALE 544
              +++  +    ++LEE  AA  +L+ E V    K++    ++      + +      L 
Sbjct: 950  KKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI----LIMED--QNNKLT 1003

Query: 545  AELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQI 582
             E + ++  V DL     E   + K LT+  N     I
Sbjct: 1004 KERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMI 1041

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 49.1 bits (117), Expect = 5e-06
 Identities = 30/144 (20%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 445  QAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA 504
            + K   E+ +  L  ++     S  E+E+ +R+   LE E S +   +A    ++ E  A
Sbjct: 1032 KLKNKHESMISELEVRLKKEEKSRQELEKIKRK---LEGESSDLHEQIAELQAQIAELKA 1088

Query: 505  ANARLESELVVLRQKLQWSRREVCNGTASLSNGPS-VAALEAELRRVQALVGDLQRQR-- 561
              A+ E EL     +L+    +  N    +    S ++ L+ +L   +A     ++Q+  
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRD 1148

Query: 562  --QELSAQVKQLTEKSNSLSQQIR 583
              +EL A   +L +  ++ + Q  
Sbjct: 1149 LSEELEALKTELEDTLDTTATQQE 1172

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Length = 189

 Score = 43.6 bits (102), Expect = 7e-05
 Identities = 20/115 (17%), Positives = 45/115 (39%), Gaps = 5/115 (4%)

Query: 469 AEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVC 528
            E+  ++   R LE EL          ++ L+     N RL+ E+  L++KL+    +  
Sbjct: 31  DELVEFQEGSRELEAELEAQLVQAEQRNRDLQAD---NQRLKYEVEALKEKLEHQYAQSY 87

Query: 529 NGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
              + L +   ++   A   ++   V +L++   +L    +          Q++ 
Sbjct: 88  KQVSVLED--DLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Length = 154

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 9/136 (6%)

Query: 450 LENALGSLRHKMHGVHASPAEVERYRRQQR-------LLERELSRVRSILAHNSKKLEET 502
           LE  L      +    A+     + +             + E+ R+R  +A  ++   + 
Sbjct: 18  LEEQLNKSLKTIASQKAAIENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKA 77

Query: 503 VAANARLESELVVLRQKLQWSRREVCNG--TASLSNGPSVAALEAELRRVQALVGDLQRQ 560
                +L  E+  L   L      +         +       L  +LR    L+  L  Q
Sbjct: 78  EEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTLQ 137

Query: 561 RQELSAQVKQLTEKSN 576
            + L   +  L  +S 
Sbjct: 138 LKNLKKVMHSLDNEST 153

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Length = 168

 Score = 40.1 bits (93), Expect = 7e-04
 Identities = 15/114 (13%), Positives = 47/114 (41%), Gaps = 6/114 (5%)

Query: 470 EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529
              R R+    + + +S++ S+     ++      + ++ + +   L+  L+  RR+  +
Sbjct: 28  TAVRLRKSHTEMSKSISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGH 87

Query: 530 GTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
            +        +  L+A +  +Q  V  L+   +++  + K+  +  N   ++  
Sbjct: 88  DSEM------IGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 41.6 bits (98), Expect = 9e-04
 Identities = 17/114 (14%), Positives = 44/114 (38%), Gaps = 6/114 (5%)

Query: 470  EVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCN 529
             VERY++    LE ++ +++  +   +K+ +  +     LE       +KL+ S  E   
Sbjct: 915  SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLR-SDVERLR 973

Query: 530  GTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIR 583
             +               +  +Q  +  L+++  +   + K + E ++    +  
Sbjct: 974  MSEE-----EAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETE 1022

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	746
1ygp_A	879	Yeast glycogen phosphorylase; phosphorylated form,	100.0
2gj4_A	824	Glycogen phosphorylase, muscle form; transferase;	100.0
1l5w_A	796	Maltodextrin phosphorylase; enzymatic catalysis, s	100.0
2c4m_A	796	Glycogen phosphorylase; allosteric control, phosph	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	96.55
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	96.48
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	96.11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.99
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	95.97
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	95.56
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	95.53
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	95.19
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.67
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	94.58
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	93.61
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	93.06
1gk4_A	84	Vimentin; intermediate filament, dimer, parallel c	90.64
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	90.06
3zbh_A	99	ESXA; unknown function, type 7 secretion, ESAT6 fa	89.85
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	89.63
3mov_A	95	Lamin-B1; LMNB1, B-type lamins, intermediate filam	89.55
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	88.9
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	88.17
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.95
1x8y_A	86	Lamin A/C; structural protein, intermediate filame	86.99
3gwk_C	98	SAG1039, putative uncharacterized protein SAG1039;	86.91
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	85.16
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	84.98
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	84.18
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	83.97
1wt6_A	81	Myotonin-protein kinase; coiled-coil, kinase activ	83.82
2efk_A	301	CDC42-interacting protein 4; EFC domain, structura	83.46
3ghg_A	562	Fibrinogen alpha chain; triple-stranded coiled coi	83.42
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	82.73
2vs0_A	97	Virulence factor ESXA; secreted, four helical bund	82.31
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	81.44
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	80.66

>2gj4_A Glycogen phosphorylase, muscle form; transferase; HET: PLR 2TH; 1.60A {Oryctolagus cuniculus} SCOP: c.87.1.4 PDB: 2gm9_A* 1abb_A* 3nc4_A* 3l79_A* 2pyd_A* 2pyi_A* 3l7a_A* 3l7b_A* 3l7c_A* 3l7d_A* 2qnb_A* 1c8l_A* 1axr_A* 1gpy_A* 1e1y_A* 1lwo_A* 1pyg_A* 1uzu_A* 1lwn_A* 1xkx_A* ...

Probab=100.00  E-value=3.8e-45  Score=407.88  Aligned_cols=161  Identities=38%  Similarity=0.481  Sum_probs=134.0

Q ss_pred             cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772         228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV  305 (746)
Q Consensus       228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD  305 (746)
                      .++|+||+++++|+||||  +++++||+..||.|+|..|+.+++.+||||+||||+|++++||+|||||||||||||+||
T Consensus       216 D~pi~Gy~~~~vn~lRlW~a~~~~~f~~~~fn~G~~~~a~~d~~~~enIt~~LYp~D~~~~Gk~lRL~Qeyf~~sa~lqd  295 (824)
T 2gj4_A          216 DTPVPGYRNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQD  295 (824)
T ss_dssp             EEEEECSSSSCEEEEEEEEEECCC----------CHHHHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             cCCcCCCCCCceEEEEEEEeecCcccchhhccCccHHHHHhcccchhhcCcCCCCCCCccchHhHhhhhhhhhhhhHHHH
Confidence            568899999999999999  678899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772         306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL  382 (746)
Q Consensus       306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a  382 (746)
                      |||+|++.+..+..       .+    ...|+.||++++||+|||||+|+||||||+|+|++|++|++|  |+|+   |+
T Consensus       296 ilr~~~~~~~g~~~-------~~----~~~~~~~~~p~viHlNDtHpal~i~ElmR~l~d~~~l~~d~A--~~i~~~~~v  362 (824)
T 2gj4_A          296 IIRRFKSSKFGCRD-------PV----RTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKA--WEVTVKTCA  362 (824)
T ss_dssp             HHHHHHC----------------------CGGGHHHHEEEEEESSTTTTHHHHHHHHHHHTSCCCHHHH--HHHHHHHEE
T ss_pred             HHHHHHHhcccccc-------cc----ccchhhcCCCcEEEccCCchHhHHHHHHHHHHHhcCCCHHHH--HHHhcCcEE
Confidence            99999876521000       00    012667799999999999999999999999999999999999  9998   99


Q ss_pred             eeccccccccccccccccc
Q psy2772         383 EVYRLGGPLACGPWKVHAE  401 (746)
Q Consensus       383 YTNHTILpEALEkWpv~~~  401 (746)
                      |||||++|||+|+||+++.
T Consensus       363 fT~HTl~~eglE~wp~~l~  381 (824)
T 2gj4_A          363 YTNHTVLPEALERWPVHLL  381 (824)
T ss_dssp             EECCCCCGGGSCEEEHHHH
T ss_pred             EEeCCChHHHhhhchHHHH
Confidence            9999999999999999976

>1l5w_A Maltodextrin phosphorylase; enzymatic catalysis, substrate complex, trans; HET: GLC PLP; 1.80A {Escherichia coli} SCOP: c.87.1.4 PDB: 1l5v_A* 1l6i_A* 2asv_A* 2av6_A* 2aw3_A* 2azd_A* 1qm5_A* 1e4o_A* 2ecp_A* 1ahp_A*

Probab=100.00  E-value=4e-44  Score=398.63  Aligned_cols=154  Identities=27%  Similarity=0.434  Sum_probs=145.0

Q ss_pred             cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772         228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV  305 (746)
Q Consensus       228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD  305 (746)
                      .+||+||+++++|+||||  ++.++||++.||.|||.+|++++..+|+||+||||+|++++||+||||||||||+|++|+
T Consensus       203 d~pi~Gy~~~~~n~lrlW~a~~~~~f~l~~fn~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq~  282 (796)
T 1l5w_A          203 DLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVAD  282 (796)
T ss_dssp             EEEEECSSSCCEEEEEEEEEECSSCCCHHHHHTTCTTGGGHHHHHHHGGGTCSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCceEEEEEEEeccCcccChhhcCCccHhhhhhchHhHhhhhhcCcCCCCccchHHHHHHHHHHHHHHHHHH
Confidence            458899999999999999  567789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772         306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL  382 (746)
Q Consensus       306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a  382 (746)
                      ||++|++++.+                   |+.||++++||+|||||+|+||||||+|+|++|++|++|  |+|+   |+
T Consensus       283 ilr~~~~~~~~-------------------~~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A--~~i~~~~~v  341 (796)
T 1l5w_A          283 ILRRHHLAGRK-------------------LHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDA--WAITSKTFA  341 (796)
T ss_dssp             HHHHHHHTTCC-------------------GGGHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHH--HHHHTTTEE
T ss_pred             HHHHHHHcCCC-------------------hhhcCCccEEEecCCccHhHHHHHHHHHhhhcCCCHHHH--HHHhhccEE
Confidence            99999998854                   444588999999999999999999999999999999999  9988   99


Q ss_pred             eecccccccccccccccccc
Q psy2772         383 EVYRLGGPLACGPWKVHAEL  402 (746)
Q Consensus       383 YTNHTILpEALEkWpv~~~l  402 (746)
                      |||||++|||||+||+++..
T Consensus       342 yT~HTl~~egle~wp~~l~~  361 (796)
T 1l5w_A          342 YTNHTLMPEALERWDVKLVK  361 (796)
T ss_dssp             EECCCCSGGGSCEEEHHHHH
T ss_pred             EEecCCcHhhhhcCCHHHHH
Confidence            99999999999999999863

>2c4m_A Glycogen phosphorylase; allosteric control, phosphate dependence, starch degrading, transferase, glycosyltransferase; HET: PLP; 1.9A {Corynebacterium callunae}

Probab=100.00  E-value=7.8e-44  Score=396.30  Aligned_cols=155  Identities=22%  Similarity=0.337  Sum_probs=145.5

Q ss_pred             hcccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHH
Q psy2772         227 LKRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ  304 (746)
Q Consensus       227 ~~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQ  304 (746)
                      ..++|+||+++++|+||||  ++.+.|||+.||.|||.+|++++..+|+||+||||+|++++||+||||||||||+|++|
T Consensus       192 yd~pi~gy~~~~~n~lrlW~a~~~~~f~l~~fn~gdy~~a~~~~~~~~~It~~LYp~D~~~~Gk~lRL~Qe~ff~~a~lq  271 (796)
T 2c4m_A          192 YDMPITGYGTHNVGTLRLWKAEPWEEFDYDAFNAQRFTDAIIERERVSDICRVLYPNDTTYEGKKLRVRQQYFFTSASLQ  271 (796)
T ss_dssp             EEEEECCTTCCCCEEEEEEEEEESSSSCHHHHHTTCHHHHHHHHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccccCcCCCceEEEEEEecccccccchhhccCcchhhhhhchHhhhchhhcCcCCCCCcchHHHHHHhHHHHHHHHHH
Confidence            3468899999999999999  46778999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---E
Q psy2772         305 VISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---L  381 (746)
Q Consensus       305 DIIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~  381 (746)
                      +||++|++.+.+                   |+.||++++||+|||||+|+||||||+|+|++|++|++|  |+|+   |
T Consensus       272 ~ilr~~~~~~~~-------------------l~~l~~p~viHlNDtHpal~i~ElmR~l~d~~~~~~d~A--~~i~~~~~  330 (796)
T 2c4m_A          272 AMIQDHLAHHKD-------------------LSNFAEFHSVQLNDTHPVLAIPELMRLLMDEHDMGWEES--WAIVSKTF  330 (796)
T ss_dssp             HHHHHHHHHSSC-------------------STTHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHH--HHHHHHHE
T ss_pred             HHHHHHHHhCCC-------------------hhhcCCCeEEEeCCChHHhHHHHHHHHHhhhcCCCHHHH--HHHhhccE
Confidence            999999988854                   445588999999999999999999999999999999999  9988   9


Q ss_pred             eeecccccccccccccccccc
Q psy2772         382 LEVYRLGGPLACGPWKVHAEL  402 (746)
Q Consensus       382 aYTNHTILpEALEkWpv~~~l  402 (746)
                      +|||||++|||||+||+++..
T Consensus       331 vyT~HTl~~egle~wp~~l~~  351 (796)
T 2c4m_A          331 AYTNHTVLTEALEQWDEQIFQ  351 (796)
T ss_dssp             EEECCCSSSTTSCEEEHHHHH
T ss_pred             EEEecCchHHHhhhCCHHHHH
Confidence            999999999999999999863

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=96.55  E-value=0.03  Score=58.71  Aligned_cols=71  Identities=15%  Similarity=0.148  Sum_probs=46.5

Q ss_pred             HHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccC
Q psy2772         505 ANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTEKSNSLSQQIRP  584 (746)
Q Consensus       505 EyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~~s~~l~~qi~~  584 (746)
                      ..+.+|.++..+++..++.++             +...+++|..+++......+++..||.+.+-.++.+-..|.+++.-
T Consensus       517 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~  583 (597)
T 3oja_B          517 RQAFKLRETQARRTEADAKQK-------------ETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR  583 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             hhhhhHHHHHHHHHhhhhhhc-------------chhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            444444555555555544443             3344678888888888888888888888888888888888888877


Q ss_pred             CCcc
Q psy2772         585 GPTG  588 (746)
Q Consensus       585 ~~~~  588 (746)
                      .|.+
T Consensus       584 ~~~~  587 (597)
T 3oja_B          584 NPDT  587 (597)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            6654

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=96.48  E-value=0.0018  Score=75.26  Aligned_cols=87  Identities=11%  Similarity=0.161  Sum_probs=25.0

Q ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHH
Q psy2772         432 LHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLES  511 (746)
Q Consensus       432 ilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~  511 (746)
                      .+.+++.++..|+++++.++..|.....++....   ...+++..+...|++++.....+|.....++++.-++..+||.
T Consensus       879 ~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e---~~l~~l~~~~~~Le~~l~ele~elee~ee~l~el~~e~~~le~  955 (1184)
T 1i84_S          879 ELKELEQKHTQLCEEKNLLQEKLQAETELYAEAE---EMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQ  955 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443333333221111   1223333344444444444444444444444444444455555


Q ss_pred             HHHHHHHHHH
Q psy2772         512 ELVVLRQKLQ  521 (746)
Q Consensus       512 EV~~LRqkLQ  521 (746)
                      ++..|+..+.
T Consensus       956 el~~L~~ele  965 (1184)
T 1i84_S          956 QMLDLEEQLE  965 (1184)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            5555554444

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=96.11  E-value=0.39  Score=43.00  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=11.7

Q ss_pred             hhhhhhhhhhhhhHHHHHHHHHHHhHhh
Q psy2772         434 SRGRNICSVQGQAKEMLENALGSLRHKM  461 (746)
Q Consensus       434 qelE~kLq~Lk~DKD~LEsAL~~L~qqM  461 (746)
                      .+++..+..|+...+.++..+..+..++
T Consensus        23 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~   50 (284)
T 1c1g_A           23 DEAEADKKAAEDRSKQLEDELVSLQKKL   50 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444444444444333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.99  E-value=0.031  Score=65.24  Aligned_cols=126  Identities=17%  Similarity=0.201  Sum_probs=44.3

Q ss_pred             hhhhhhhhHHHHHHHHHHHhHhhhccC-CChHHHHHHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHHHHhhhHHHHH
Q psy2772         439 ICSVQGQAKEMLENALGSLRHKMHGVH-ASPAEVERYRRQQRLLERELSRVRSI---LAHNSKKLEETVAANARLESELV  514 (746)
Q Consensus       439 kLq~Lk~DKD~LEsAL~~L~qqME~~~-dqPa~~EKi~~QQrlLE~eLsrVRae---LSrnSkELE~twaEyaRLE~EV~  514 (746)
                      .++.|++.|.+||+-|..|.++++... .+-...+++......++.|....+.+   |...-+|++++-++-..||.|+.
T Consensus       915 ~~~~l~~~~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~  994 (1080)
T 2dfs_A          915 SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA  994 (1080)
T ss_dssp             ------------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677778888888888888776533 34444444444444455544444322   22234455555555666666666


Q ss_pred             HHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2772         515 VLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQLTE  573 (746)
Q Consensus       515 ~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrqLt~  573 (746)
                      .|+..++........      ..+...+++   -+.|+.+..|+...+.|.+|++.|..
T Consensus       995 ~l~~~~~~~~ke~~~------lee~~~~~~---~~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A          995 KLRKELHQTQTEKKT------IEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666654431110      001111122   24456666666666666666666663

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=95.97  E-value=0.35  Score=43.32  Aligned_cols=12  Identities=8%  Similarity=0.177  Sum_probs=4.4

Q ss_pred             HHHhhhHHHHHH
Q psy2772         504 AANARLESELVV  515 (746)
Q Consensus       504 aEyaRLE~EV~~  515 (746)
                      .+..+++.++..
T Consensus        76 ~~~~~~~~~~~~   87 (284)
T 1c1g_A           76 KKATDAEADVAS   87 (284)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            333333333333

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=95.56  E-value=0.049  Score=63.49  Aligned_cols=53  Identities=15%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2772         472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSR  524 (746)
Q Consensus       472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr  524 (746)
                      +++..|...|+.+|...+..++....+++..-.++.+|+.++..+...|.+..
T Consensus       888 ~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~elee~e  940 (1184)
T 1i84_S          888 TQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEE  940 (1184)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555556666666666666666677777777777777777777665443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=95.53  E-value=0.44  Score=46.75  Aligned_cols=95  Identities=13%  Similarity=0.029  Sum_probs=71.4

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy2772         421 HAISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLE  500 (746)
Q Consensus       421 ~klSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE  500 (746)
                      -+|-.++..|.=+..++..+..|..+.+.|+..+..++.++....   .+++.+..+++-++.++..+++.+.+..++|.
T Consensus         8 ~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~---~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l~   84 (256)
T 3na7_A            8 KQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLE---EEKLALKLQVSKNEQTLQDTNAKIASIQKKMS   84 (256)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356667778877788888888888888888888888888887765   56788888999999999999988887776665


Q ss_pred             HH--HHHHhhhHHHHHHHHH
Q psy2772         501 ET--VAANARLESELVVLRQ  518 (746)
Q Consensus       501 ~t--waEyaRLE~EV~~LRq  518 (746)
                      +.  -.||.-|+.|+..++.
T Consensus        85 ~v~~~kE~~aL~kEie~~~~  104 (256)
T 3na7_A           85 EIKSERELRSLNIEEDIAKE  104 (256)
T ss_dssp             HCSSSSHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHHH
Confidence            42  2355555555555543

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=95.19  E-value=0.16  Score=59.53  Aligned_cols=83  Identities=11%  Similarity=0.109  Sum_probs=54.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHH
Q psy2772         468 PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAEL  547 (746)
Q Consensus       468 Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekEL  547 (746)
                      -..+++...+-+.+++.+.....+++..-++++++-.|+..||....++++.||+...+                |++|.
T Consensus       969 l~~le~~~~e~~~~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~----------------L~~e~ 1032 (1080)
T 2dfs_A          969 VERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSE----------------LKEQN 1032 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHH
Confidence            33444445555555666666666666777777777778888899888888888866643                66666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy2772         548 RRVQALVGDLQRQRQELSA  566 (746)
Q Consensus       548 wRIQdVvggLsrQRqeLs~  566 (746)
                      ..++.-+.+|....++.+.
T Consensus      1033 ~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1033 TLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666666655554444

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.67  E-value=1.3  Score=43.49  Aligned_cols=109  Identities=11%  Similarity=0.203  Sum_probs=51.9

Q ss_pred             hhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772         443 QGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW  522 (746)
Q Consensus       443 Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa  522 (746)
                      ++.+-+.+..-+...+.+|...+ ++-..+.+.+.-..++++.....-+|-....++|..-.+.+.++..+..++..|.+
T Consensus        65 ~e~~i~~~~~ri~~~~~~l~~v~-~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~  143 (256)
T 3na7_A           65 NEQTLQDTNAKIASIQKKMSEIK-SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALE  143 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333334443333 44444444444444444444444444444444444444444444444444444432


Q ss_pred             HHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         523 SRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQV  568 (746)
Q Consensus       523 Qr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qV  568 (746)
                      -                ++.+..++-.++.-...|..+|.+|...+
T Consensus       144 ~----------------~~~~~~~~~e~~~e~~~l~~~r~~l~~~i  173 (256)
T 3na7_A          144 L----------------ESLVENEVKNIKETQQIIFKKKEDLVEKT  173 (256)
T ss_dssp             H----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             H----------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            2                23355555556666666777777776654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=94.58  E-value=0.19  Score=52.67  Aligned_cols=30  Identities=13%  Similarity=0.046  Sum_probs=18.3

Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhHhhh
Q psy2772         433 HSRGRNICSVQGQAKEMLENALGSLRHKMH  462 (746)
Q Consensus       433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME  462 (746)
                      +.+++..++.|+++.+..|..+...+.+|+
T Consensus       458 ~~~~~~~i~~l~~~~~~~~~~l~~~~~~i~  487 (597)
T 3oja_B          458 VNELRAEVQQLTNEQIQQEQLLQGLHAEID  487 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            334556666666666666666666666644

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.61  E-value=0.95  Score=40.72  Aligned_cols=90  Identities=16%  Similarity=0.164  Sum_probs=68.6

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772         423 ISRDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEET  502 (746)
Q Consensus       423 lSr~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~t  502 (746)
                      .+-..+..+-+|.++..|++|+.-|..||..|.-+.++.+.      .++.+..+-..||.+|..+|.++++-..+.+.-
T Consensus        35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~------~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~L  108 (129)
T 3tnu_B           35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGEL------ALKDARNKLAELEEALQKAKQDMARLLREYQEL  108 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            34456677889999999999999999999999888776432      344455555668888988988888888887777


Q ss_pred             HHHHhhhHHHHHHHHH
Q psy2772         503 VAANARLESELVVLRQ  518 (746)
Q Consensus       503 waEyaRLE~EV~~LRq  518 (746)
                      .+--.+||.|+.--|.
T Consensus       109 lnvKl~Ld~EIatYRk  124 (129)
T 3tnu_B          109 MNTKLALDVEIATYRK  124 (129)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7777777777765553

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=93.06  E-value=1.1  Score=40.48  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=65.9

Q ss_pred             hhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q psy2772         425 RDQIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVA  504 (746)
Q Consensus       425 r~ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twa  504 (746)
                      -..+..+-+|.++..|++|+.-|..||..|.-+.++.+.      .++.+..+-..||.+|..+|.++++-..+.+.-.+
T Consensus        39 Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~------~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~  112 (131)
T 3tnu_A           39 EISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCM------QLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLD  112 (131)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788999999999999999999999888776432      33444445556888888888888888887777777


Q ss_pred             HHhhhHHHHHHHHH
Q psy2772         505 ANARLESELVVLRQ  518 (746)
Q Consensus       505 EyaRLE~EV~~LRq  518 (746)
                      --.+||.|+.--|.
T Consensus       113 vKl~Ld~EIatYRk  126 (131)
T 3tnu_A          113 VKTRLEQEIATYRR  126 (131)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777766554

>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1

Probab=90.64  E-value=3  Score=35.39  Aligned_cols=77  Identities=16%  Similarity=0.286  Sum_probs=58.2

Q ss_pred             hhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHH
Q psy2772         439 ICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQ  518 (746)
Q Consensus       439 kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRq  518 (746)
                      .|++|+.-|..||..|.-+.++.+.      .++.+..+-..||.+|..+|.++++-..+...--+--.+||.|+..-|.
T Consensus         2 el~~l~~~~~sLE~~l~e~e~~~~~------~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~Ld~EIatYRk   75 (84)
T 1gk4_A            2 EVDALKGTNESLERQMREMEENFAV------EAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMALDIEIATYRK   75 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            4788899999999999988877543      3444555556678888888888888888887777777788888877765


Q ss_pred             HHH
Q psy2772         519 KLQ  521 (746)
Q Consensus       519 kLQ  521 (746)
                      =|.
T Consensus        76 LLE   78 (84)
T 1gk4_A           76 LLE   78 (84)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=90.06  E-value=1.7  Score=42.15  Aligned_cols=84  Identities=11%  Similarity=0.069  Sum_probs=60.1

Q ss_pred             hhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC-hHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHH
Q psy2772         427 QIASKLHSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS-PAEVERYRR---QQRLLERELSRVRSILAHNSKKLEET  502 (746)
Q Consensus       427 ce~dKilqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq-Pa~~EKi~~---QQrlLE~eLsrVRaeLSrnSkELE~t  502 (746)
                      ..++-.++|+.+++..|...|+.||.-+..|..++++-+.+ ....+.|+-   .-..|+.||-+++.-++++..+.-+.
T Consensus        44 ~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L  123 (168)
T 3o0z_A           44 SQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEA  123 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44567788899999999999999999999999999888855 445554443   34567777777777777776555444


Q ss_pred             HHHHhhhH
Q psy2772         503 VAANARLE  510 (746)
Q Consensus       503 waEyaRLE  510 (746)
                      -....-||
T Consensus       124 ~Ekl~~lE  131 (168)
T 3o0z_A          124 QDMLNHSE  131 (168)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44333333

>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}

Probab=89.85  E-value=4.5  Score=32.74  Aligned_cols=79  Identities=10%  Similarity=0.203  Sum_probs=59.1

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHhHhh---hccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHH
Q psy2772         436 GRNICSVQGQAKEMLENALGSLRHKM---HGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESE  512 (746)
Q Consensus       436 lE~kLq~Lk~DKD~LEsAL~~L~qqM---E~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~E  512 (746)
                      ++..-..+..-.+.|+..|..|++.+   ...|.-++ .+++..++..+...+.++...|...++.|.++-..|...|++
T Consensus        14 l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a-~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~d~~   92 (99)
T 3zbh_A           14 LRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGAS-SEAFIQQYQELRPSFEKMAVLLNEVGQQLHNSATILEDTDQQ   92 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555666666665553   34677664 477888888899999999999999999999999999999988


Q ss_pred             HHH
Q psy2772         513 LVV  515 (746)
Q Consensus       513 V~~  515 (746)
                      +..
T Consensus        93 ~a~   95 (99)
T 3zbh_A           93 IAS   95 (99)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            753

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=89.63  E-value=3.2  Score=54.01  Aligned_cols=86  Identities=16%  Similarity=0.211  Sum_probs=53.6

Q ss_pred             HHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         488 VRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQ  567 (746)
Q Consensus       488 VRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~q  567 (746)
                      .-++|...-++|+++=++.+.||..|..|+.++++.......      ...+....++=|.|.+.+++||..-|..=+.+
T Consensus      2019 ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~------L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~ 2092 (3245)
T 3vkg_A         2019 LENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQ------IKTESSKVKNKVDRSIALLDNLNSERGRWEQQ 2092 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhhccccHHHH
Confidence            334444555566666666666777777777666654431000      01122223445677888999999999988888


Q ss_pred             HHHHhhhccccc
Q psy2772         568 VKQLTEKSNSLS  579 (746)
Q Consensus       568 VrqLt~~s~~l~  579 (746)
                      +.+|.++..+|.
T Consensus      2093 ~~~l~~~~~~L~ 2104 (3245)
T 3vkg_A         2093 SENFNTQMSTVV 2104 (3245)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc
Confidence            888887666653

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=88.90  E-value=1.8  Score=41.38  Aligned_cols=87  Identities=17%  Similarity=0.168  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCC-------cchHHHHHHHHH
Q psy2772         477 QQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNG-------PSVAALEAELRR  549 (746)
Q Consensus       477 QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~-------qekAqLekELwR  549 (746)
                      +....+.++.+....|.+.-+.-..+=.+..++|+||+-|=..|=++-+.+-.     +.-       ....+|++.|.-
T Consensus        52 ~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa-----~ar~~~~~~e~r~~~L~~ql~e  126 (154)
T 2ocy_A           52 ELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVA-----DARKEKYAIEILNKRLTEQLRE  126 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555555555555666778889999999998888776543211     011       122334566666


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q psy2772         550 VQALVGDLQRQRQELSAQV  568 (746)
Q Consensus       550 IQdVvggLsrQRqeLs~qV  568 (746)
                      -+.++..|+.|=++|..-|
T Consensus       127 ~~~~l~~lq~ql~~LK~v~  145 (154)
T 2ocy_A          127 KDTLLDTLTLQLKNLKKVM  145 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            6666666666666665444

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=88.17  E-value=4  Score=35.53  Aligned_cols=89  Identities=13%  Similarity=0.139  Sum_probs=52.2

Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772         433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANAR  508 (746)
Q Consensus       433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR  508 (746)
                      |.....|++.|+.+||....-...+..++....+.    -..+..+.+.-..||.+|-.+-..|...-.+||.+-.....
T Consensus         4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~   83 (101)
T 3u59_A            4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATD   83 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456778888888887666555555554333211    12233344444456666666666666666666666655666


Q ss_pred             hHHHHHHHHHHHH
Q psy2772         509 LESELVVLRQKLQ  521 (746)
Q Consensus       509 LE~EV~~LRqkLQ  521 (746)
                      -|.+|..|-..+|
T Consensus        84 AE~evasLnRriq   96 (101)
T 3u59_A           84 AEAEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666666655

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=87.95  E-value=4.1  Score=35.71  Aligned_cols=89  Identities=16%  Similarity=0.138  Sum_probs=50.3

Q ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCC----hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Q psy2772         433 HSRGRNICSVQGQAKEMLENALGSLRHKMHGVHAS----PAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANAR  508 (746)
Q Consensus       433 lqelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dq----Pa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaR  508 (746)
                      |..+..|++.||.+||....=...+..++.....-    =..+..+.+.-.+||.||-++-..|.....+||.+-.....
T Consensus         4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~   83 (101)
T 3u1c_A            4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAK   83 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456788888888886665555554443332211    11222222233356666666666666666666666666666


Q ss_pred             hHHHHHHHHHHHH
Q psy2772         509 LESELVVLRQKLQ  521 (746)
Q Consensus       509 LE~EV~~LRqkLQ  521 (746)
                      -|.+|..|-.++|
T Consensus        84 aE~ev~~L~Rriq   96 (101)
T 3u1c_A           84 AESEVASLNRRIQ   96 (101)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666655555

>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A

Probab=86.99  E-value=3.2  Score=35.55  Aligned_cols=78  Identities=21%  Similarity=0.212  Sum_probs=50.7

Q ss_pred             hhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHH
Q psy2772         438 NICSVQGQAKEMLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLR  517 (746)
Q Consensus       438 ~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LR  517 (746)
                      ..|.+||..+..||..|.-+.++...      .++.+..+-..||.+|..+|+++++-..+...--+--.+||.|+..-|
T Consensus         3 ~eie~L~~q~~~Le~~l~e~E~~~~~------~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~Le~EIatYR   76 (86)
T 1x8y_A            3 CQLSQLQCQLAAKEAKLRDLEDSLAR------ERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLALDMEIHAYR   76 (86)
T ss_dssp             ---------CTTHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            35677788888888888877765432      445555566667888888888888888887777777778888888777


Q ss_pred             HHHH
Q psy2772         518 QKLQ  521 (746)
Q Consensus       518 qkLQ  521 (746)
                      .-|.
T Consensus        77 kLLE   80 (86)
T 1x8y_A           77 KLLE   80 (86)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            6554

>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A

Probab=86.91  E-value=5.6  Score=32.59  Aligned_cols=78  Identities=9%  Similarity=0.135  Sum_probs=59.8

Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHhHhh---hccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHH
Q psy2772         436 GRNICSVQGQAKEMLENALGSLRHKM---HGVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESE  512 (746)
Q Consensus       436 lE~kLq~Lk~DKD~LEsAL~~L~qqM---E~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~E  512 (746)
                      ++..-..++...+.|+..|..|.+.+   ...|.-+++ +++..++..+...+.++...|...++.|.++-..|...|++
T Consensus        13 l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~-~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~~~~~D~~   91 (98)
T 3gwk_C           13 LRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTF-DSFEAQFNELSPKITEFAQLLEDINQQLLKVADIIEQTDAD   91 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666666666666653   346766655 77888888899999999999999999999999999999987


Q ss_pred             HH
Q psy2772         513 LV  514 (746)
Q Consensus       513 V~  514 (746)
                      +.
T Consensus        92 ~A   93 (98)
T 3gwk_C           92 IA   93 (98)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=85.16  E-value=5.6  Score=33.98  Aligned_cols=59  Identities=25%  Similarity=0.397  Sum_probs=47.9

Q ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy2772         495 NSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG----DLQRQRQELSA  566 (746)
Q Consensus       495 nSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg----gLsrQRqeLs~  566 (746)
                      .+.+|+.+=.+|..||..|.-|.+.|+.+..             +...++.||.++..++.    +|+--|+.|+.
T Consensus         5 ~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~-------------~q~~~~~Elk~~~e~Ld~KI~eL~elrq~Lak   67 (72)
T 3cve_A            5 SHMKLQEVEIRNKDLEGQLSEMEQRLEKSQS-------------EQDAFRSNLKTLLEILDGKIFELTELRDNLAK   67 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            5789999999999999999999999998874             34458889998888765    46666666654

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=84.18  E-value=6.4  Score=34.12  Aligned_cols=61  Identities=25%  Similarity=0.371  Sum_probs=49.0

Q ss_pred             HhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q psy2772         493 AHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVG----DLQRQRQELSA  566 (746)
Q Consensus       493 SrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvg----gLsrQRqeLs~  566 (746)
                      ..++.+|+.+=.+|..||.-|.-|.+.|++++.             +...++.||.++..++.    +|+--|+.|+.
T Consensus         9 e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~-------------~q~~~~~Elk~l~e~Ld~KI~eL~elRqgLak   73 (79)
T 3cvf_A            9 EETQQKVQDLETRNAELEHQLRAMERSLEEARA-------------ERERARAEVGRAAQLLDVSLFELSELREGLAR   73 (79)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            346889999999999999999999999998875             34458889998888765    46777777664

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=83.97  E-value=28  Score=35.97  Aligned_cols=51  Identities=14%  Similarity=-0.014  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772         471 VERYRRQQRLLEREL----SRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ  521 (746)
Q Consensus       471 ~EKi~~QQrlLE~eL----srVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ  521 (746)
                      +.++..|++-++.++    .+.+++...-+.+.++-=.|++||+.++..+..++.
T Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (487)
T 3oja_A          412 LRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALA  466 (487)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhH
Confidence            445555444433333    333333333333333333444444444444444333

>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}

Probab=83.82  E-value=5  Score=35.14  Aligned_cols=45  Identities=24%  Similarity=0.382  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy2772         478 QRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQW  522 (746)
Q Consensus       478 QrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQa  522 (746)
                      +..+++||++||..+=..-++|-++-..|.-|+.|+..||..|.+
T Consensus        26 KQ~i~EELs~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee   70 (81)
T 1wt6_A           26 RQSLSREMEAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL   70 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568999999999999999999999999999999999999999987

>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4

Probab=83.46  E-value=32  Score=32.95  Aligned_cols=45  Identities=20%  Similarity=0.132  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2772         477 QQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQ  521 (746)
Q Consensus       477 QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQ  521 (746)
                      +++.++.+..++..++....++|+++-..|..+..|++.+|++..
T Consensus       110 ~rK~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~  154 (301)
T 2efk_A          110 ERKMHFQEGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAE  154 (301)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677777777777888788888888888888877777777665

>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*

Probab=83.42  E-value=4.4  Score=45.13  Aligned_cols=29  Identities=21%  Similarity=0.227  Sum_probs=26.3

Q ss_pred             HHHHHHHHHh-hhHHHHHHHHHHHHHHHhh
Q psy2772         498 KLEETVAANA-RLESELVVLRQKLQWSRRE  526 (746)
Q Consensus       498 ELE~twaEya-RLE~EV~~LRqkLQaQr~~  526 (746)
                      .++|+.+||+ -||+-+.-||.+++.|..+
T Consensus       103 dNdNtynE~S~ELRRrIqyLKekVdnQlsn  132 (562)
T 3ghg_A          103 NRDNTYNRVSEDLRSRIEVLKRKVIEKVQH  132 (562)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999 9999999999999988854

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=82.73  E-value=9.6  Score=37.39  Aligned_cols=136  Identities=20%  Similarity=0.147  Sum_probs=64.4

Q ss_pred             hhhhhhhhhhhhh-hhhhhhhhhhhhhHHHHHHHHHHHhHhhhccCCChHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHH
Q psy2772         421 HAISRDQIASKLH-SRGRNICSVQGQAKEMLENALGSLRHKMHGVHASPAEV-ERYRRQQRLLERELSRVRSILAHNSKK  498 (746)
Q Consensus       421 ~klSr~ce~dKil-qelE~kLq~Lk~DKD~LEsAL~~L~qqME~~~dqPa~~-EKi~~QQrlLE~eLsrVRaeLSrnSkE  498 (746)
                      .-|.-|++-+|-| .++|..|.++...--.|.+-+..|..+.+.+++--... .-...|+-.||.+|...|...-...+.
T Consensus        31 ~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~  110 (189)
T 2v71_A           31 DELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKY  110 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444433 34555555555555555555555555554444210000 111235778888888777776666554


Q ss_pred             HHHHHHHHhhhHHHHHHHHHH---HHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         499 LEETVAANARLESELVVLRQK---LQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELS  565 (746)
Q Consensus       499 LE~twaEyaRLE~EV~~LRqk---LQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs  565 (746)
                      +-..=-.|+-||+..-++-..   ++.-+ |..-        -..|.|+.||-.=+.+..-+||-|.|++
T Consensus       111 ireLEq~NDdlEr~~R~~~~SleD~e~kl-n~ai--------Er~alLE~El~EKe~l~~~~QRLkdE~r  171 (189)
T 2v71_A          111 VRELEQANDDLERAKRATIMSLEDFEQRL-NQAI--------ERNAFLESELDEKESLLVSVQRLKDEAR  171 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--------HHHHHHHHHHHHHHHHHCCC--------
T ss_pred             HHHHHHHhhHHHHHHHHHHhhHHHHHHHH-HHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444455555443333333   32222 1111        2567788888876666666666666553

>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A

Probab=82.31  E-value=7.5  Score=31.27  Aligned_cols=77  Identities=18%  Similarity=0.254  Sum_probs=51.6

Q ss_pred             hhhhhhhhhhHHHHHHHHHHHhHhhh---ccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHH
Q psy2772         437 RNICSVQGQAKEMLENALGSLRHKMH---GVHASPAEVERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESEL  513 (746)
Q Consensus       437 E~kLq~Lk~DKD~LEsAL~~L~qqME---~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV  513 (746)
                      +..-..++.-.+.|+..|..|++.+.   ..|.-++. +.+..++..+...+..+...|...++.|..+-..|..-|++.
T Consensus        12 ~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~-~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~~y~~~d~~~   90 (97)
T 2vs0_A           12 RAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAF-SRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTADAVQEQDQQL   90 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444555555555555555533   46655555 677778889999999999999999999999999999888765


Q ss_pred             H
Q psy2772         514 V  514 (746)
Q Consensus       514 ~  514 (746)
                      .
T Consensus        91 a   91 (97)
T 2vs0_A           91 S   91 (97)
T ss_dssp             -
T ss_pred             H
Confidence            3

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=81.44  E-value=17  Score=37.39  Aligned_cols=49  Identities=16%  Similarity=0.242  Sum_probs=25.6

Q ss_pred             HHHHHHHHHhHhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q psy2772         449 MLENALGSLRHKMHGVHASPAEVERYRRQQRLLERELSRVRSILAHNSK  497 (746)
Q Consensus       449 ~LEsAL~~L~qqME~~~dqPa~~EKi~~QQrlLE~eLsrVRaeLSrnSk  497 (746)
                      ..|.||..+..+|+..-+.-.+...++.=+++||++|.+++.-++++=|
T Consensus       370 t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~  418 (471)
T 3mq9_A          370 TVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEA  418 (471)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHH
Confidence            3444444444444433222222233444467778888777777766533

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=80.66  E-value=27  Score=34.26  Aligned_cols=77  Identities=23%  Similarity=0.372  Sum_probs=49.0

Q ss_pred             HHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2772         491 ILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQALVGDLQRQRQELSAQVKQ  570 (746)
Q Consensus       491 eLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQdVvggLsrQRqeLs~qVrq  570 (746)
                      +|.+.-|..-..-..+.+|+.|+..+|.+++.+.....         .+...|++||-       .|...+..|...+|.
T Consensus        50 eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~---------~~~~~Lq~el~-------~l~~~~~~l~~~ire  113 (189)
T 2v71_A           50 QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSY---------KQVSVLEDDLS-------QTRAIKEQLHKYVRE  113 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-------HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence            45555555556667788999999999999987764311         24555666654       445556666666666


Q ss_pred             Hhhhccccccccc
Q psy2772         571 LTEKSNSLSQQIR  583 (746)
Q Consensus       571 Lt~~s~~l~~qi~  583 (746)
                      |-...+.|..+.|
T Consensus       114 LEq~NDdlEr~~R  126 (189)
T 2v71_A          114 LEQANDDLERAKR  126 (189)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHH
Confidence            6666655554433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	746
d1ygpa_	876	c.87.1.4 (A:) Glycogen phosphorylase {Baker's yeas	1e-13
d2gj4a1	824	c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit	5e-12
d1l5wa_	796	c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {E	1e-11

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 824

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Glycogen phosphorylase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 67.0 bits (163), Expect = 5e-12
 Identities = 48/92 (52%), Positives = 52/92 (56%)

Query: 246 ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV 305
           +      LK  N G YIQAVLDRNLAENISRVLYPNDN F GKELRLKQEYF+ AATLQ 
Sbjct: 236 KAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQD 295

Query: 306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTK 337
           I   FK           ++       V     
Sbjct: 296 IIRRFKSSKFGCRDPVRTNFDAFPDKVAIQLN 327

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]} Length = 796

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Maltodextrin phosphorylase (MALP)
species: Escherichia coli [TaxId: 562]

 Score = 65.9 bits (160), Expect = 1e-11
 Identities = 34/129 (26%), Positives = 47/129 (36%), Gaps = 30/129 (23%)

Query: 245 TERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQ 304
                   L   NDGD+++A      AE +++VLYPNDN F GK+LRL Q+YF CA ++ 
Sbjct: 222 ATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVA 281

Query: 305 VISLPFKDQGRALL------------------------------GYSHSSGREVSKSVVR 334
            I       GR L                                 S      ++     
Sbjct: 282 DILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFA 341

Query: 335 HTKHMPSPA 343
           +T H   P 
Sbjct: 342 YTNHTLMPE 350

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	746
d1ygpa_	876	Glycogen phosphorylase {Baker's yeast (Saccharomyc	100.0
d2gj4a1	824	Glycogen phosphorylase {Rabbit (Oryctolagus cunicu	100.0
d1l5wa_	796	Maltodextrin phosphorylase (MALP) {Escherichia col	100.0
d2efla1	288	Formin-binding protein 1, FNBP1 {Human (Homo sapie	81.1

>d2gj4a1 c.87.1.4 (A:12-835) Glycogen phosphorylase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Glycogen phosphorylase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=100.00  E-value=2.4e-41  Score=374.95  Aligned_cols=163  Identities=38%  Similarity=0.486  Sum_probs=136.2

Q ss_pred             cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772         228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV  305 (746)
Q Consensus       228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD  305 (746)
                      .++|+||.+.++|+||||  +++++||+..||.|+|..++.+++.+|||+.||||+|+.|.||+|||+|||||+|||+|+
T Consensus       216 dv~i~g~~~~~vn~lRlW~a~~~~~f~~~~~~~G~~~~~lld~~~~eni~~~ly~~d~ly~G~~lRl~Qqy~l~~~g~~~  295 (824)
T d2gj4a1         216 DTPVPGYRNNVVNTMRLWSAKAPNDFNLKDFNVGGYIQAVLDRNLAENISRVLYPNDNFFEGKELRLKQEYFVVAATLQD  295 (824)
T ss_dssp             EEEEECSSSSCEEEEEEEEEECCC----------CHHHHHHTHHHHHGGGSBCCCCSSCCCCCHHHHHHHHHHHHHHHHH
T ss_pred             eeEEeeccCceeEEEEEEeeccCccccccccccCcHHHHHHhhcchhcchhccCCcccccCchHHHHHHHHHHHHHHHHH
Confidence            588999999999999999  578899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772         306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL  382 (746)
Q Consensus       306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a  382 (746)
                      |||+|++.+.++        +   +.+-..|+.||++++||||||||+++||||||+|+|++|++|++|  |+||   |+
T Consensus       296 ilr~~~~~~~~~--------~---~~~~~~~~~~~~~~vihlNegHpa~ai~ElmR~l~d~~gl~~d~A--~e~v~~~~~  362 (824)
T d2gj4a1         296 IIRRFKSSKFGC--------R---DPVRTNFDAFPDKVAIQLNDTHPSLAIPELMRVLVDLERLDWDKA--WEVTVKTCA  362 (824)
T ss_dssp             HHHHHHC----------------------CGGGHHHHEEEEEESSTTTTHHHHHHHHHHHTSCCCHHHH--HHHHHHHEE
T ss_pred             HHHHHHhccccc--------c---cccccchhhccccceeeccCCccHhHHHHHHHHHHHhcCCCHHHH--HHHhhceEE
Confidence            999999877421        1   112234777899999999999999999999999999999999999  9999   99


Q ss_pred             eeccccccccccccccccccc
Q psy2772         383 EVYRLGGPLACGPWKVHAELP  403 (746)
Q Consensus       383 YTNHTILpEALEkWpv~~~l~  403 (746)
                      |||||++|||+|+||+++...
T Consensus       363 fTtHTpvpag~E~f~~~l~~~  383 (824)
T d2gj4a1         363 YTNHTVLPEALERWPVHLLET  383 (824)
T ss_dssp             EECCCCCGGGSCEEEHHHHHH
T ss_pred             EEeccCchHhcCccCHHHHHH
Confidence            999999999999999988753

>d1l5wa_ c.87.1.4 (A:) Maltodextrin phosphorylase (MALP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: Oligosaccharide phosphorylase
domain: Maltodextrin phosphorylase (MALP)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.8e-39  Score=358.90  Aligned_cols=154  Identities=27%  Similarity=0.434  Sum_probs=145.7

Q ss_pred             cccccccCCcceeEEeec--cCCCCCCCCCCCChhHHHHHHHHHhccccceecccCCCCcccchhhhhhhhhhhhhhHHH
Q psy2772         228 KRHLVELEKQVSITFNLT--ERNEKIPLKFVNDGDYIQAVLDRNLAENISRVLYPNDNNFGGKELRLKQEYFMCAATLQV  305 (746)
Q Consensus       228 ~~~v~Gye~~~vNtLRLw--esseeFDLesFN~GdY~~Avd~r~~AEnITrVLYPDDSt~eGKeLRLKQQYFfVSASLQD  305 (746)
                      +++|+||.+.++|+||||  ++.+.||+..||.|+|.++++++..+++||.+|||+|++++||++||+|||||++||+|+
T Consensus       203 d~~v~g~~~~~v~~LrLw~a~~~~~~~~~~~~~~d~~~~~~n~~~~r~IT~~LY~~D~~~~gkelRl~Qe~~l~~~g~~~  282 (796)
T d1l5wa_         203 DLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFLRAEQQGINAEKLTKVLYPNDNAFEGKKLRLMQQYFQCACSVAD  282 (796)
T ss_dssp             EEEEECSSSCCEEEEEEEEEECSSCCCHHHHHTTCTTGGGHHHHHHHGGGTCSSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeecccCCceeEEEeeecccCccccccccccccHHHHHhchhhhhccceEeCCCCcccchHHHHHHHHHhhhhhHHHH
Confidence            578999999999999999  468889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCCCCCCcccccccceeecccCCCCceEEEecCCCCccchhhhhhhhccccCcccccceeEEEE---Ee
Q psy2772         306 ISLPFKDQGRALLGYSHSSGREVSKSVVRHTKHMPSPAIVATTGSGPFLGYPKSDNIILPRKQHLFLDSVIWYIS---LL  382 (746)
Q Consensus       306 IIRrfKkrg~dl~~~~~~~L~~L~dkVAIhi~~fp~kvaIQiNDTHPsLaIPELmRIL~de~gl~wdeAv~wdIt---~a  382 (746)
                      |+++|++.+.+                   |+.||++++||||||||+++||||||+|+|++|++|++|  |+||   |+
T Consensus       283 l~r~~~~~~~~-------------------~~~~~~~~vihlNEgHpafai~El~R~l~d~~gl~~~~A--~e~vr~~~~  341 (796)
T d1l5wa_         283 ILRRHHLAGRK-------------------LHELADYEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDA--WAITSKTFA  341 (796)
T ss_dssp             HHHHHHHTTCC-------------------GGGHHHHEEEEEESSTTTTHHHHHHHHHHHHSCCCHHHH--HHHHTTTEE
T ss_pred             HHHHHhhcCCC-------------------hHHccchhhhhcccchHHHHHHHHHHHHHHhcCCCHHHH--HHHhhceEE
Confidence            99999988764                   445589999999999999999999999999999999999  9999   99


Q ss_pred             eecccccccccccccccccc
Q psy2772         383 EVYRLGGPLACGPWKVHAEL  402 (746)
Q Consensus       383 YTNHTILpEALEkWpv~~~l  402 (746)
                      |||||.+|+|+|+||+++..
T Consensus       342 fTtHTpvpag~e~fp~~li~  361 (796)
T d1l5wa_         342 YTNHTLMPEALERWDVKLVK  361 (796)
T ss_dssp             EECCCCSGGGSCEEEHHHHH
T ss_pred             EeccCCchhhccccCHHHHH
Confidence            99999999999999998764

>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BAR/IMD domain-like
superfamily: BAR/IMD domain-like
family: FCH domain
domain: Formin-binding protein 1, FNBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.10  E-value=16  Score=31.63  Aligned_cols=91  Identities=11%  Similarity=0.066  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhccCCCCCCCCcchHHHHHHHHHHH
Q psy2772         472 ERYRRQQRLLERELSRVRSILAHNSKKLEETVAANARLESELVVLRQKLQWSRREVCNGTASLSNGPSVAALEAELRRVQ  551 (746)
Q Consensus       472 EKi~~QQrlLE~eLsrVRaeLSrnSkELE~twaEyaRLE~EV~~LRqkLQaQr~~~~~~~~~~~~~qekAqLekELwRIQ  551 (746)
                      .....+++.+..+.......+...-++|+.+...|.+...|+..++..++..-..         .......+++--...+
T Consensus       107 ~~~~~~~K~~~~~~~k~~k~~~~~~~~l~k~k~~Y~~~~~e~e~~~~~~~~~~~~---------~~~~~~~~~K~~~k~~  177 (288)
T d2efla1         107 QELKQERKSNFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDAD---------INVTKADVEKARQQAQ  177 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------TTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---------cccchHHHHHHHHHHH
Confidence            3445677888889999999999999999999999999999999999888743321         1223344444444444


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q psy2772         552 ALVGDLQRQRQELSAQVKQL  571 (746)
Q Consensus       552 dVvggLsrQRqeLs~qVrqL  571 (746)
                      .....+++-+.++-.+|..+
T Consensus       178 ~~~~~~~~a~~~Y~~~v~~~  197 (288)
T d2efla1         178 IRHQMAEDSKADYSSILQKF  197 (288)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            44444555555555555444