Psyllid ID: psy2783

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340
Protein Sequence
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECSTWQHNSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Secondary Structure (PSIPRED)
cccccccccccccccccHHHcccccccccccccccccccccccccccccccccHHHccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccccccccHHHHHHHccccccccccccccccccccHHHHHHHHccccHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccHHccccccHHHHcccccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccccHcccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHHHHccHHHHHccccccccEcccHcHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccEEcHHH
Coil and Loop (DISEMBL)
tarkstggkaprkQLATKAarksapatggvkkphryrpgtVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRtarkstggkaprkQLATKAarksapatggvkkphryrpgtVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAkrvtimpkdihwpsqwcdnltecstwqhnstMARTKQTarkstggkaprkQLATKAarksapatggvkkphryrpgtVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTdlrfqssa
Flexible Loop (DISEMBL)
tarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreIRRYQKSTellirklpfqrLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKrtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreIRRYQKSTellirklpfqrLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECSTWQHNSTMARtkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreIRRYQKSTellirklpfqrLVREIAQDfktdlrfqssa
Low Complexity Region (SEG)
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECSTWQHNSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Disordered region (IsUnstruct)
**************************************GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHA****************************************GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECSTWQ************************************************GTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK*********
Disordered Region (DISOPRED)
TAR****************************************************LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAI*********************************************ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECSTWQH************************************************TVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS*
Disordered Region (DISEMBL)
********************************PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR********************************PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECSTWQH*****************************************PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Disordered Region (DISPRO)
********************************PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR**T**K*************************RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECST********************************************PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECSTWQHNSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	340	2.2.26 [Sep-21-2011]
P84239	136	Histone H3 OS=Urechis cau	N/A	N/A	0.361	0.904	0.975	3e-64
P84237	136	Histone H3 OS=Tigriopus c	N/A	N/A	0.361	0.904	0.975	3e-64
P84235	136	Histone H3 OS=Platynereis	N/A	N/A	0.361	0.904	0.975	3e-64
P02299	136	Histone H3 OS=Drosophila	yes	N/A	0.361	0.904	0.975	3e-64
P84236	136	Histone H3 OS=Drosophila	N/A	N/A	0.361	0.904	0.975	3e-64
P84238	136	Histone H3 OS=Chironomus	N/A	N/A	0.361	0.904	0.975	3e-64
Q28D37	136	Histone H3.2 OS=Xenopus t	no	N/A	0.361	0.904	0.975	3e-64
P84233	136	Histone H3.2 OS=Xenopus l	N/A	N/A	0.361	0.904	0.975	3e-64
P84232	136	Histone H3.2 OS=Poroderma	N/A	N/A	0.361	0.904	0.975	3e-64
P84234	136	Histone H3.2 OS=Oncorhync	N/A	N/A	0.361	0.904	0.975	3e-64

>sp|P84239|H3_URECA Histone H3 OS=Urechis caupo PE=1 SV=2

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.
Urechis caupo (taxid: 6431)

>sp|P84237|H3_TIGCA Histone H3 OS=Tigriopus californicus PE=3 SV=2

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Tigriopus californicus (taxid: 6832)

>sp|P84235|H3_PLADU Histone H3 OS=Platynereis dumerilii PE=3 SV=2

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Platynereis dumerilii (taxid: 6359)

>sp|P02299|H3_DROME Histone H3 OS=Drosophila melanogaster GN=His3 PE=1 SV=4

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila melanogaster (taxid: 7227)

>sp|P84236|H3_DROHY Histone H3 OS=Drosophila hydei GN=His3 PE=3 SV=2

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Drosophila hydei (taxid: 7224)

>sp|P84238|H3_CHITH Histone H3 OS=Chironomus thummi thummi PE=3 SV=2

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Chironomus thummi thummi (taxid: 7155)

>sp|Q28D37|H32_XENTR Histone H3.2 OS=Xenopus tropicalis GN=TGas081o10.1 PE=2 SV=3

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Xenopus tropicalis (taxid: 8364)

>sp|P84233|H32_XENLA Histone H3.2 OS=Xenopus laevis PE=1 SV=2

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Xenopus laevis (taxid: 8355)

>sp|P84232|H32_PORAF Histone H3.2 OS=Poroderma africanum PE=1 SV=2

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Poroderma africanum (taxid: 30489)

>sp|P84234|H32_ONCMY Histone H3.2 OS=Oncorhynchus mykiss PE=1 SV=2

 Score =  245 bits (626), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.

Oncorhynchus mykiss (taxid: 8022)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
156350379	229	predicted protein [Nematostella vectensi	0.629	0.934	0.913	1e-115
449436665	274	PREDICTED: uncharacterized protein LOC10	0.682	0.846	0.806	1e-110
297802114	229	F10A5.19 [Arabidopsis lyrata subsp. lyra	0.629	0.934	0.870	1e-110
432892305	250	PREDICTED: histone H3.3-like [Oryzias la	0.576	0.784	0.878	1e-109
297839447	236	F10A5.19 [Arabidopsis lyrata subsp. lyra	0.65	0.936	0.857	1e-109
392333971	325	PREDICTED: uncharacterized protein LOC68	0.679	0.710	0.773	1e-108
9369379	236	F10A5.19 [Arabidopsis thaliana]	0.65	0.936	0.849	1e-108
395859211	389	PREDICTED: uncharacterized protein LOC10	0.917	0.802	0.623	1e-102
391344534	277	PREDICTED: uncharacterized protein LOC10	0.605	0.743	0.758	2e-98
357476499	391	Histone H3 [Medicago truncatula] gi|3555	0.852	0.741	0.613	3e-96

>gi|156350379|ref|XP_001622258.1| predicted protein [Nematostella vectensis] gi|156208747|gb|EDO30158.1| predicted protein [Nematostella vectensis]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 212/232 (91%), Positives = 212/232 (91%), Gaps = 18/232 (7%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGK 120
           PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR         
Sbjct: 67  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR--------- 117

Query: 121 APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI 180
                    AARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI
Sbjct: 118 ---------AARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI 168

Query: 181 AQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
           AQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI  
Sbjct: 169 AQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 220

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|449436665|ref|XP_004136113.1| PREDICTED: uncharacterized protein LOC101209420 [Cucumis sativus]

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 209/259 (80%), Positives = 215/259 (83%), Gaps = 27/259 (10%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVALREIR+YQKSTELLIRKL
Sbjct: 7   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR--------- 111
           PFQRLVREIAQDFKTDLRFQSSAV ALQEA+EAYLVGLFEDTNLCAIHAKR         
Sbjct: 67  PFQRLVREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

Query: 112 ------------------TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVA 153
                             TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHR+RPGTVA
Sbjct: 127 LARRIRGERFARMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVA 186

Query: 154 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDT 213
           LREIR+YQKST             REIAQDFKTDLRFQSSAV ALQEA+EAYLVGLFEDT
Sbjct: 187 LREIRKYQKSTXXXXXXXXXXXXXREIAQDFKTDLRFQSSAVAALQEAAEAYLVGLFEDT 246

Query: 214 NLCAIHAKRVTIMPKDIHW 232
           NLCAIHAKRVTIMPKDI  
Sbjct: 247 NLCAIHAKRVTIMPKDIQL 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297802114|ref|XP_002868941.1| F10A5.19 [Arabidopsis lyrata subsp. lyrata] gi|297314777|gb|EFH45200.1| F10A5.19 [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 202/232 (87%), Positives = 208/232 (89%), Gaps = 18/232 (7%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKL
Sbjct: 7   TARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGK 120
           PFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKR         
Sbjct: 67  PFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKR--------- 117

Query: 121 APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI 180
                    AARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREI
Sbjct: 118 ---------AARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI 168

Query: 181 AQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
           AQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKDI  
Sbjct: 169 AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQL 220

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|432892305|ref|XP_004075755.1| PREDICTED: histone H3.3-like [Oryzias latipes]

 Score =  400 bits (1029), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/231 (87%), Positives = 211/231 (91%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IHWPSQWCDNLTECSTWQHNSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKK 289
           I    +             +  MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKK
Sbjct: 125 IQLARRIRGERPGGVFVLLSGNMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKK 184

Query: 290 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 185 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAA 235

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|297839447|ref|XP_002887605.1| F10A5.19 [Arabidopsis lyrata subsp. lyrata] gi|297333446|gb|EFH63864.1| F10A5.19 [Arabidopsis lyrata subsp. lyrata]

 Score =  399 bits (1026), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/232 (85%), Positives = 207/232 (89%), Gaps = 11/232 (4%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKS GGKAPRK LATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKL
Sbjct: 7   TARKSHGGKAPRKLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGK 120
           PFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKR         
Sbjct: 67  PFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT------- 119

Query: 121 APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI 180
                +   AARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREI
Sbjct: 120 ----IMPKDAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI 175

Query: 181 AQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
           AQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+  
Sbjct: 176 AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQL 227

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|392333971|ref|XP_002725328.2| PREDICTED: uncharacterized protein LOC680498 [Rattus norvegicus] gi|392354401|ref|XP_001057443.2| PREDICTED: uncharacterized protein LOC680498 [Rattus norvegicus]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 212/274 (77%), Positives = 218/274 (79%), Gaps = 43/274 (15%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAV+ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVIALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IH-----------WPSQWCD-NLTECSTWQHNST-------------------------- 251
           I            +   + D N  +   W   S+                          
Sbjct: 125 IQLARRIRGERAMFSLSFLDLNAHQSPVWNMTSSTYRPIQEGGLLYIYLNFLCTHLILHS 184

Query: 252 -----MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRY 306
                MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRY
Sbjct: 185 SQRSQMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRY 244

Query: 307 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 245 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 278

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|9369379|gb|AAF87128.1|AC006434_24 F10A5.19 [Arabidopsis thaliana]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/232 (84%), Positives = 206/232 (88%), Gaps = 11/232 (4%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKS GGKAPR  LATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKL
Sbjct: 7   TARKSHGGKAPRTLLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGK 120
           PFQRLVREIAQD+KTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKR         
Sbjct: 67  PFQRLVREIAQDYKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT------- 119

Query: 121 APRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREI 180
                +   AARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREI
Sbjct: 120 ----IMPKDAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREI 175

Query: 181 AQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
           AQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD+  
Sbjct: 176 AQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDVQL 227

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|395859211|ref|XP_003801936.1| PREDICTED: uncharacterized protein LOC100956128 [Otolemur garnettii]

 Score =  379 bits (972), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 227/364 (62%), Positives = 246/364 (67%), Gaps = 52/364 (14%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRT-------- 112
           PFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKR         
Sbjct: 67  PFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126

Query: 113 -ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI-------------- 157
            AR+  G +  R    TK   KS+       KP   + G + L+                
Sbjct: 127 LARRIRGERVNRILGETKEFHKSSF------KPWADKYGIMNLKNKGRGGKGLGKGGAKR 180

Query: 158 -RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLC 216
            R+  +     I K   +RL R       + L ++ +     +   + +L  +  D    
Sbjct: 181 HRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEET-----RGVLKVFLENVIRDAVTY 235

Query: 217 AIHAKRVTIMPKDIHWPSQWCDNLTECSTWQHNSTMARTKQTARKSTGGKAPRKQLATKA 276
             HAKR T+   D+      C              MARTKQTARKSTGGKAPRKQLATKA
Sbjct: 236 TEHAKRKTVTAMDV-----TCFG------------MARTKQTARKSTGGKAPRKQLATKA 278

Query: 277 ARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRF 336
           ARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRF
Sbjct: 279 ARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRF 338

Query: 337 QSSA 340
           QSSA
Sbjct: 339 QSSA 342

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|391344534|ref|XP_003746551.1| PREDICTED: uncharacterized protein LOC100906955 [Metaseiulus occidentalis]

 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 185/244 (75%), Positives = 196/244 (80%), Gaps = 38/244 (15%)

Query: 27  TGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 86
            GGVKKP+R++PGTVALREIRRYQ+STELL+RKLPFQRLVREIAQ FKTDLRFQ+SAVMA
Sbjct: 25  VGGVKKPYRFKPGTVALREIRRYQRSTELLMRKLPFQRLVREIAQGFKTDLRFQNSAVMA 84

Query: 87  LQEASEAYLVGLFEDTNLCAIHAKR----------------------------------- 111
           LQEASEAYLV LFEDTNLCA+HAKR                                   
Sbjct: 85  LQEASEAYLVSLFEDTNLCALHAKRVTIKAEDIRLARRIRGERTASERPSSQPQIIIMAR 144

Query: 112 ---TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 168
              TARKS+GGKAPR QLATKA RK+APA G VKKPHR+RPGTVALREIRRYQKSTELLI
Sbjct: 145 TKQTARKSSGGKAPRLQLATKATRKNAPAPGDVKKPHRFRPGTVALREIRRYQKSTELLI 204

Query: 169 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 228
           RKLPFQRLVREIAQD KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK
Sbjct: 205 RKLPFQRLVREIAQDSKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 264

Query: 229 DIHW 232
           D+  
Sbjct: 265 DMQL 268

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357476499|ref|XP_003608535.1| Histone H3 [Medicago truncatula] gi|355509590|gb|AES90732.1| Histone H3 [Medicago truncatula]

 Score =  357 bits (917), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 213/347 (61%), Positives = 235/347 (67%), Gaps = 57/347 (16%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKSTGGKAPRK LATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKL
Sbjct: 48  TARKSTGGKAPRKPLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKL 107

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGK 120
           PFQRLVREIAQDFKTDLRFQS AV+ALQEA+EAYLVGLFEDTNLCAIHAKR         
Sbjct: 108 PFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVT------I 161

Query: 121 APRK-QLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLV-- 177
            P+  QLA +                        +R  R +    +L+ R+LPF R +  
Sbjct: 162 MPKDIQLARR------------------------IRGERCFVIGNDLVYRELPFIRSLIN 197

Query: 178 ---REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDT-NLCAIHAKRVTIMPKDIHWP 233
              R I     +  R+ S+  + +     A+    FE + +   I A       +   +P
Sbjct: 198 CGDRNILTRIVSRSRWISTDTLYIY----AFTSSPFEVSYSFLQISANEFLKRRRKRKFP 253

Query: 234 SQWCDNLTECSTWQHNSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRY 293
                             MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRY
Sbjct: 254 ----------------EVMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRY 297

Query: 294 RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQS A
Sbjct: 298 RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHA 344

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	340
UNIPROTKB|G1K329	142	LOC768333 "Histone H3" [Gallus	0.370	0.887	0.960	5.7e-59
UNIPROTKB|G1K331	143	LOC768333 "Histone H3" [Gallus	0.355	0.846	0.991	1.9e-58
FB|FBgn0051613	136	His3:CG31613 "His3:CG31613" [D	0.355	0.889	0.991	1.9e-58
FB|FBgn0053803	136	His3:CG33803 "His3:CG33803" [D	0.355	0.889	0.991	1.9e-58
FB|FBgn0053806	136	His3:CG33806 "His3:CG33806" [D	0.355	0.889	0.991	1.9e-58
FB|FBgn0053809	136	His3:CG33809 "His3:CG33809" [D	0.355	0.889	0.991	1.9e-58
FB|FBgn0053812	136	His3:CG33812 "His3:CG33812" [D	0.355	0.889	0.991	1.9e-58
FB|FBgn0053815	136	His3:CG33815 "His3:CG33815" [D	0.355	0.889	0.991	1.9e-58
FB|FBgn0053818	136	His3:CG33818 "His3:CG33818" [D	0.355	0.889	0.991	1.9e-58
FB|FBgn0053821	136	His3:CG33821 "His3:CG33821" [D	0.355	0.889	0.991	1.9e-58

UNIPROTKB|G1K329 LOC768333 "Histone H3" [Gallus gallus (taxid:9031)]

 Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
 Identities = 122/127 (96%), Positives = 124/127 (97%)

Query:   105 CAI-HAKRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 163
             CA+   K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS
Sbjct:     5 CAMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 64

Query:   164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 223
             TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV
Sbjct:    65 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 124

Query:   224 TIMPKDI 230
             TIMPKDI
Sbjct:   125 TIMPKDI 131

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|G1K331 LOC768333 "Histone H3" [Gallus gallus (taxid:9031)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:    12 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 71

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    72 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 131

Query:   230 I 230
             I
Sbjct:   132 I 132

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0051613 His3:CG31613 "His3:CG31613" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:     5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query:   230 I 230
             I
Sbjct:   125 I 125

GO:0006334 "nucleosome assembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IEA

FB|FBgn0053803 His3:CG33803 "His3:CG33803" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:     5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query:   230 I 230
             I
Sbjct:   125 I 125

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

FB|FBgn0053806 His3:CG33806 "His3:CG33806" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:     5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query:   230 I 230
             I
Sbjct:   125 I 125

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053809 His3:CG33809 "His3:CG33809" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:     5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query:   230 I 230
             I
Sbjct:   125 I 125

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053812 His3:CG33812 "His3:CG33812" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:     5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query:   230 I 230
             I
Sbjct:   125 I 125

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053815 His3:CG33815 "His3:CG33815" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:     5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query:   230 I 230
             I
Sbjct:   125 I 125

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

FB|FBgn0053818 His3:CG33818 "His3:CG33818" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:     5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query:   230 I 230
             I
Sbjct:   125 I 125

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0000786 "nucleosome" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0003677 "DNA binding" evidence=ISS

FB|FBgn0053821 His3:CG33821 "His3:CG33821" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 120/121 (99%), Positives = 121/121 (100%)

Query:   110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
             K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct:     5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query:   170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
             KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct:    65 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query:   230 I 230
             I
Sbjct:   125 I 125

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0003677 "DNA binding" evidence=ISS

GO:0006333 "chromatin assembly or disassembly" evidence=ISS

GO:0000786 "nucleosome" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P84235	H3_PLADU	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
P84234	H32_ONCMY	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
P84237	H3_TIGCA	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
P84236	H3_DROHY	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
P84231	H32_ICTBU	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
Q71DI3	H32_HUMAN	No assigned EC number	0.9756	0.3617	0.9044	yes	N/A
P84233	H32_XENLA	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
P84232	H32_PORAF	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
Q64400	H32_CRILO	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P84239	H3_URECA	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
P84238	H3_CHITH	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
P69078	H3_SOLST	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P69079	H3_STRDR	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
Q6LED0	H31_RAT	No assigned EC number	0.9674	0.3617	0.9044	no	N/A
P69072	H3_LYTPI	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P69073	H3_PARLI	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P69071	H3_DERIM	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P69076	H3_PSAMI	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P69077	H3_PYCHE	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P69074	H3_PISBR	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P84230	H32_CAIMO	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
Q6P823	H33_XENTR	No assigned EC number	0.9430	0.3617	0.9044	no	N/A
P08898	H3_CAEEL	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
Q4QRF4	H32_DANRE	No assigned EC number	0.9756	0.3617	0.9044	yes	N/A
Q71LE2	H33_PIG	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
P84244	H33_MOUSE	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
P84245	H33_RAT	No assigned EC number	0.9430	0.3617	0.9044	no	N/A
P84246	H33_RABIT	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
P84250	H33_DROHY	No assigned EC number	0.9430	0.3617	0.9044	N/A	N/A
Q28D37	H32_XENTR	No assigned EC number	0.9756	0.3617	0.9044	no	N/A
P84243	H33_HUMAN	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
P69075	H3_PISOC	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P84248	H33_SPISO	No assigned EC number	0.9430	0.3617	0.9044	N/A	N/A
P84249	H33_DROME	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
P02299	H3_DROME	No assigned EC number	0.9756	0.3617	0.9044	yes	N/A
P84227	H32_BOVIN	No assigned EC number	0.9756	0.3617	0.9044	yes	N/A
P84228	H32_MOUSE	No assigned EC number	0.9756	0.3617	0.9044	yes	N/A
P84229	H32_CHICK	No assigned EC number	0.9756	0.3617	0.9044	yes	N/A
Q6LBE8	H32_MUSPA	No assigned EC number	0.9756	0.3617	0.9044	N/A	N/A
Q6PI20	H33_DANRE	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
Q6LBF0	H31_MUSPA	No assigned EC number	0.9674	0.3617	0.9044	N/A	N/A
P06352	H3_STRPU	No assigned EC number	0.9593	0.3617	0.9044	yes	N/A
Q5E9F8	H33_BOVIN	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
Q6PI79	H33_XENLA	No assigned EC number	0.9430	0.3617	0.9044	N/A	N/A
P68431	H31_HUMAN	No assigned EC number	0.9674	0.3617	0.9044	yes	N/A
P84247	H33_CHICK	No assigned EC number	0.9430	0.3617	0.9044	yes	N/A
P68433	H31_MOUSE	No assigned EC number	0.9674	0.3617	0.9044	yes	N/A
P68432	H31_BOVIN	No assigned EC number	0.9674	0.3617	0.9044	yes	N/A
P08903	H32_ENCAL	No assigned EC number	0.9512	0.3617	0.9044	N/A	N/A
P22843	H3_ACRFO	No assigned EC number	0.9593	0.3617	0.9044	N/A	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	340
PTZ00018	136	PTZ00018, PTZ00018, histone H3; Provisional	2e-73
PTZ00018	136	PTZ00018, PTZ00018, histone H3; Provisional	5e-66
PLN00121	136	PLN00121, PLN00121, histone H3; Provisional	3e-64
PLN00121	136	PLN00121, PLN00121, histone H3; Provisional	4e-58
PTZ00018	136	PTZ00018, PTZ00018, histone H3; Provisional	2e-50
smart00428	105	smart00428, H3, Histone H3	3e-49
PLN00121	136	PLN00121, PLN00121, histone H3; Provisional	2e-44
smart00428	105	smart00428, H3, Histone H3	5e-43
PLN00161	135	PLN00161, PLN00161, histone H3; Provisional	4e-35
PLN00160	97	PLN00160, PLN00160, histone H3; Provisional	3e-30
PLN00161	135	PLN00161, PLN00161, histone H3; Provisional	1e-29
COG2036	91	COG2036, HHT1, Histones H3 and H4 [Chromatin struc	2e-25
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	2e-25
PLN00160	97	PLN00160, PLN00160, histone H3; Provisional	6e-25
smart00428	105	smart00428, H3, Histone H3	5e-23
COG2036	91	COG2036, HHT1, Histones H3 and H4 [Chromatin struc	9e-21
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	2e-19
PLN00161	135	PLN00161, PLN00161, histone H3; Provisional	1e-17
PLN00160	97	PLN00160, PLN00160, histone H3; Provisional	6e-09
COG2036	91	COG2036, HHT1, Histones H3 and H4 [Chromatin struc	8e-08
pfam00125	75	pfam00125, Histone, Core histone H2A/H2B/H3/H4	8e-06

>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional

 Score =  222 bits (568), Expect = 2e-73
 Identities = 115/122 (94%), Positives = 120/122 (98%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IH 231
           I 
Sbjct: 125 IQ 126

Length = 136

>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional

 Score =  204 bits (520), Expect = 5e-66
 Identities = 106/111 (95%), Positives = 110/111 (99%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7   TARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
           PFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKR
Sbjct: 67  PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKR 117

Length = 136

>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional

 Score =  199 bits (507), Expect = 3e-64
 Identities = 117/122 (95%), Positives = 121/122 (99%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IH 231
           I 
Sbjct: 125 IQ 126

Length = 136

>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional

 Score =  184 bits (467), Expect = 4e-58
 Identities = 108/111 (97%), Positives = 111/111 (100%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTELLIRKL
Sbjct: 7   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
           PFQRLVREIAQDFKTDLRFQSSAV+ALQEA+EAYLVGLFEDTNLCAIHAKR
Sbjct: 67  PFQRLVREIAQDFKTDLRFQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKR 117

Length = 136

>gnl|CDD|185400 PTZ00018, PTZ00018, histone H3; Provisional

 Score =  163 bits (415), Expect = 2e-50
 Identities = 86/89 (96%), Positives = 88/89 (98%)

Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MARTKQTARKSTGGKAPRKQLA+KAARKSAP TGG+KKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTE 60

Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89

Length = 136

>gnl|CDD|128705 smart00428, H3, Histone H3

 Score =  160 bits (406), Expect = 3e-49
 Identities = 79/94 (84%), Positives = 83/94 (88%), Gaps = 2/94 (2%)

Query: 139 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVM 196
           GG  K  RYRPG VALREIR+YQKST+LLIRK PFQRLVREIAQ F T  DLRFQSSA+M
Sbjct: 1   GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIM 60

Query: 197 ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
           ALQEA+EAYLVGLFEDTNL AIHAKRVTIMPKDI
Sbjct: 61  ALQEAAEAYLVGLFEDTNLLAIHAKRVTIMPKDI 94

Length = 105

>gnl|CDD|177733 PLN00121, PLN00121, histone H3; Provisional

 Score =  148 bits (375), Expect = 2e-44
 Identities = 88/89 (98%), Positives = 89/89 (100%)

Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTE 60

Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89

Length = 136

>gnl|CDD|128705 smart00428, H3, Histone H3

 Score =  144 bits (364), Expect = 5e-43
 Identities = 71/86 (82%), Positives = 75/86 (87%), Gaps = 2/86 (2%)

Query: 28  GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVM 85
           GG  K  RYRPG VALREIR+YQKST+LLIRK PFQRLVREIAQ F T  DLRFQSSA+M
Sbjct: 1   GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIM 60

Query: 86  ALQEASEAYLVGLFEDTNLCAIHAKR 111
           ALQEA+EAYLVGLFEDTNL AIHAKR
Sbjct: 61  ALQEAAEAYLVGLFEDTNLLAIHAKR 86

Length = 105

>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional

 Score =  124 bits (313), Expect = 4e-35
 Identities = 71/123 (57%), Positives = 90/123 (73%), Gaps = 7/123 (5%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           +   ++   GK P+K+ +    ++        KKPHRYRPGTVALREIR+YQKSTELLIR
Sbjct: 4   RLQGKRFRKGKKPQKEASGVTRQELD------KKPHRYRPGTVALREIRKYQKSTELLIR 57

Query: 170 KLPFQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK 228
           KLPF RLVREI+ +   +  R+ + A++ALQEA+E +LV LFED NLCAIHAKRVTIMPK
Sbjct: 58  KLPFARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPK 117

Query: 229 DIH 231
           D+ 
Sbjct: 118 DMQ 120

Length = 135

>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional

 Score =  110 bits (276), Expect = 3e-30
 Identities = 58/85 (68%), Positives = 71/85 (83%), Gaps = 1/85 (1%)

Query: 148 RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDLRFQSSAVMALQEASEAYL 206
           RPG  AL+EI+ YQKST+LLIR+LPF RLVREI  +  +   R+Q SA++ALQEA+EA+L
Sbjct: 2   RPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHL 61

Query: 207 VGLFEDTNLCAIHAKRVTIMPKDIH 231
           VGLFED+NLCAIH KRVTIMPKD+ 
Sbjct: 62  VGLFEDSNLCAIHGKRVTIMPKDMQ 86

Length = 97

>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional

 Score =  110 bits (275), Expect = 1e-29
 Identities = 64/111 (57%), Positives = 81/111 (72%), Gaps = 7/111 (6%)

Query: 2   ARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLP 61
            ++   GK P+K+ +    ++        KKPHRYRPGTVALREIR+YQKSTELLIRKLP
Sbjct: 7   GKRFRKGKKPQKEASGVTRQELD------KKPHRYRPGTVALREIRKYQKSTELLIRKLP 60

Query: 62  FQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
           F RLVREI+ +   +  R+ + A++ALQEA+E +LV LFED NLCAIHAKR
Sbjct: 61  FARLVREISNEMLREPFRWTAEALLALQEATEDFLVHLFEDCNLCAIHAKR 111

Length = 135

>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics]

 Score = 97.8 bits (244), Expect = 2e-25
 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 5/82 (6%)

Query: 149 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 208
           PG V L+EIRRYQ+ST+LL+ K P +R++R+   +     R  SSA+  LQEA E YL  
Sbjct: 1   PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEE 55

Query: 209 LFEDTNLCAIHAKRVTIMPKDI 230
           + ED    A HAKR T+  +DI
Sbjct: 56  IAEDAVELAEHAKRKTVKAEDI 77

Length = 91

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 96.9 bits (242), Expect = 2e-25
 Identities = 37/69 (53%), Positives = 45/69 (65%)

Query: 163 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 222
           S+ LLI KLPF R+VRE+ + F  +LR  S A +ALQEA E  L  + ED  L A HAKR
Sbjct: 1   SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60

Query: 223 VTIMPKDIH 231
            TI P+DI 
Sbjct: 61  KTITPRDIQ 69

Length = 75

>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional

 Score = 96.7 bits (240), Expect = 6e-25
 Identities = 51/76 (67%), Positives = 63/76 (82%), Gaps = 1/76 (1%)

Query: 37  RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDLRFQSSAVMALQEASEAYL 95
           RPG  AL+EI+ YQKST+LLIR+LPF RLVREI  +  +   R+Q SA++ALQEA+EA+L
Sbjct: 2   RPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHL 61

Query: 96  VGLFEDTNLCAIHAKR 111
           VGLFED+NLCAIH KR
Sbjct: 62  VGLFEDSNLCAIHGKR 77

Length = 97

>gnl|CDD|128705 smart00428, H3, Histone H3

 Score = 91.4 bits (227), Expect = 5e-23
 Identities = 46/58 (79%), Positives = 48/58 (82%), Gaps = 2/58 (3%)

Query: 285 GGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSA 340
           GG  K  RYRPG VALREIR+YQKST+LLIRK PFQRLVREIAQ F T  DLRFQSSA
Sbjct: 1   GGKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSA 58

Length = 105

>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics]

 Score = 85.1 bits (211), Expect = 9e-21
 Identities = 36/74 (48%), Positives = 47/74 (63%), Gaps = 5/74 (6%)

Query: 38  PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 97
           PG V L+EIRRYQ+ST+LL+ K P +R++R+   +     R  SSA+  LQEA E YL  
Sbjct: 1   PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEE 55

Query: 98  LFEDTNLCAIHAKR 111
           + ED    A HAKR
Sbjct: 56  IAEDAVELAEHAKR 69

Length = 91

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 80.7 bits (200), Expect = 2e-19
 Identities = 32/61 (52%), Positives = 39/61 (63%)

Query: 52  STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
           S+ LLI KLPF R+VRE+ + F  +LR  S A +ALQEA E  L  + ED  L A HAKR
Sbjct: 1   SSRLLILKLPFSRVVRELKEGFYAELRISSKAPVALQEALEDLLEEILEDAGLLARHAKR 60

Query: 112 T 112
            
Sbjct: 61  K 61

Length = 75

>gnl|CDD|215082 PLN00161, PLN00161, histone H3; Provisional

 Score = 77.7 bits (191), Expect = 1e-17
 Identities = 45/78 (57%), Positives = 55/78 (70%), Gaps = 7/78 (8%)

Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MAR  Q  ++   GK P+K+ +    ++        KKPHRYRPGTVALREIR+YQKSTE
Sbjct: 1   MARRLQ-GKRFRKGKKPQKEASGVTRQELD------KKPHRYRPGTVALREIRKYQKSTE 53

Query: 312 LLIRKLPFQRLVREIAQD 329
           LLIRKLPF RLVREI+ +
Sbjct: 54  LLIRKLPFARLVREISNE 71

Length = 135

>gnl|CDD|165727 PLN00160, PLN00160, histone H3; Provisional

 Score = 52.4 bits (125), Expect = 6e-09
 Identities = 29/48 (60%), Positives = 36/48 (75%), Gaps = 1/48 (2%)

Query: 294 RPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDF-KTDLRFQSSA 340
           RPG  AL+EI+ YQKST+LLIR+LPF RLVREI  +  +   R+Q SA
Sbjct: 2   RPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSA 49

Length = 97

>gnl|CDD|224947 COG2036, HHT1, Histones H3 and H4 [Chromatin structure and dynamics]

 Score = 49.2 bits (118), Expect = 8e-08
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 5/46 (10%)

Query: 295 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           PG V L+EIRRYQ+ST+LL+ K P +R++R+   +     R  SSA
Sbjct: 1   PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSA 41

Length = 91

>gnl|CDD|201020 pfam00125, Histone, Core histone H2A/H2B/H3/H4

 Score = 42.9 bits (102), Expect = 8e-06
 Identities = 17/32 (53%), Positives = 22/32 (68%)

Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           S+ LLI KLPF R+VRE+ + F  +LR  S A
Sbjct: 1   SSRLLILKLPFSRVVRELKEGFYAELRISSKA 32

Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	340
PTZ00018	136	histone H3; Provisional	100.0
PLN00121	136	histone H3; Provisional	100.0
PLN00161	135	histone H3; Provisional	100.0
KOG1745|consensus	137		100.0
PLN00160	97	histone H3; Provisional	100.0
smart00428	105	H3 Histone H3.	100.0
PTZ00018	136	histone H3; Provisional	100.0
PLN00121	136	histone H3; Provisional	100.0
PLN00161	135	histone H3; Provisional	100.0
KOG1745|consensus	137		100.0
PLN00160	97	histone H3; Provisional	100.0
smart00428	105	H3 Histone H3.	100.0
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	99.85
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.72
COG2036	91	HHT1 Histones H3 and H4 [Chromatin structure and d	99.66
PF00125	75	Histone: Core histone H2A/H2B/H3/H4 histone h2a si	99.25
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	98.88
cd00076	85	H4 Histone H4, one of the four histones, along wit	97.66
cd07981	72	TAF12 TATA Binding Protein (TBP) Associated Factor	97.63
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	97.5
smart00803	65	TAF TATA box binding protein associated factor. TA	97.49
PLN00035	103	histone H4; Provisional	97.47
PTZ00015	102	histone H4; Provisional	97.37
smart00417	74	H4 Histone H4.	97.32
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	97.01
KOG0870|consensus	172		96.95
PF15630	76	CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C	96.66
PF03847	68	TFIID_20kDa: Transcription initiation factor TFIID	96.38
smart00576	77	BTP Bromodomain transcription factors and PHD doma	95.67
KOG1142|consensus	258		95.6
PF02969	66	TAF: TATA box binding protein associated factor (T	95.41
PF15511	414	CENP-T: Centromere kinetochore component CENP-T; P	94.75
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	94.01
PF02291	129	TFIID-31kDa: Transcription initiation factor IID,	93.95
cd00074	115	H2A Histone 2A; H2A is a subunit of the nucleosome	93.31
smart00417	74	H4 Histone H4.	92.73
cd00076	85	H4 Histone H4, one of the four histones, along wit	92.52
smart00803	65	TAF TATA box binding protein associated factor. TA	92.28
PLN00035	103	histone H4; Provisional	92.25
PF00808	65	CBFD_NFYB_HMF: Histone-like transcription factor (	91.99
KOG0870|consensus	172		91.78
PTZ00015	102	histone H4; Provisional	89.64
cd07979	117	TAF9 TATA Binding Protein (TBP) Associated Factor	82.94
PF07524	77	Bromo_TP: Bromodomain associated; InterPro: IPR006	81.09
smart00576	77	BTP Bromodomain transcription factors and PHD doma	80.69

>PTZ00018 histone H3; Provisional

Probab=100.00  E-value=8.7e-48  Score=332.94  Aligned_cols=130  Identities=88%  Similarity=1.245  Sum_probs=120.5

Q ss_pred             cccccccCCCCCCcchhhhhhhcCCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcccccc
Q psy2783         110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR  189 (340)
Q Consensus       110 kRvtrKs~~~kAPRKqlAsk~~~ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~r  189 (340)
                      |..+.++.++++|+++.+.+...++.+.+++.++++||+||++||+|||+||+||+|||||+||+||||||++++.+++|
T Consensus         5 k~~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~r   84 (136)
T PTZ00018          5 KQTARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR   84 (136)
T ss_pred             CcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcCCcce
Confidence            34456777888889888887777777777888999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         190 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       190 fq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      ||++||+|||||+|+|||+||||+|+||+||||||||++||+|+.+|.++
T Consensus        85 f~~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~  134 (136)
T PTZ00018         85 FQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE  134 (136)
T ss_pred             eeHHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecchhhHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999764

>PLN00121 histone H3; Provisional

Probab=100.00  E-value=1.6e-47  Score=331.23  Aligned_cols=130  Identities=90%  Similarity=1.249  Sum_probs=120.9

Q ss_pred             cccccccCCCCCCcchhhhhhhcCCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcccccc
Q psy2783         110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR  189 (340)
Q Consensus       110 kRvtrKs~~~kAPRKqlAsk~~~ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~r  189 (340)
                      |..++++.++++|+++.+.+...++.+..++.++++||+||++||+|||+||+||+|||||+||+||||||++++.+++|
T Consensus         5 k~~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~R   84 (136)
T PLN00121          5 KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR   84 (136)
T ss_pred             CcCccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhCccce
Confidence            34456777888899888888777777777888999999999999999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         190 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       190 fq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      ||++||+|||||+|+|||+||||+|+||+||||||||++||+|+.+|.++
T Consensus        85 f~~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~~kD~~L~~rirg~  134 (136)
T PLN00121         85 FQSSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE  134 (136)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecchhhHHHHHHhccc
Confidence            99999999999999999999999999999999999999999999999765

>PLN00161 histone H3; Provisional

Probab=100.00  E-value=2.4e-46  Score=323.05  Aligned_cols=122  Identities=58%  Similarity=0.888  Sum_probs=108.3

Q ss_pred             cccCCCCCCcchhhhhhhcCCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcc-ccccccH
Q psy2783         114 RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQS  192 (340)
Q Consensus       114 rKs~~~kAPRKqlAsk~~~ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~-~~~rfq~  192 (340)
                      +++.+++.|++....+      ...++.++++||+||++||+|||+||+||+|||||+||+||||||++++. +++|||+
T Consensus         8 ~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~~~~~Rfq~   81 (135)
T PLN00161          8 KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEMLREPFRWTA   81 (135)
T ss_pred             ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcCCCCcEeeH
Confidence            4555666666654332      24456789999999999999999999999999999999999999999986 5899999


Q ss_pred             HHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcccc
Q psy2783         193 SAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLT  241 (340)
Q Consensus       193 ~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~  241 (340)
                      +||+|||||+|+|||+||||+|+||+||||||||++||+|+.+|.+...
T Consensus        82 ~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm~kDm~La~rirg~~~  130 (135)
T PLN00161         82 EALLALQEATEDFLVHLFEDCNLCAIHAKRVTIMPKDMQLARRIRGPIY  130 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccchhhHHHHHHhccccc
Confidence            9999999999999999999999999999999999999999999987654

>KOG1745|consensus

Probab=100.00  E-value=4.5e-46  Score=321.55  Aligned_cols=131  Identities=85%  Similarity=1.193  Sum_probs=121.9

Q ss_pred             ccccccccCCCCCCcchhhhhhhcCC-CCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcccc
Q psy2783         109 AKRTARKSTGGKAPRKQLATKAARKS-APATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD  187 (340)
Q Consensus       109 akRvtrKs~~~kAPRKqlAsk~~~ks-~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~  187 (340)
                      .+.++++..++++|++..+.+...+. .+..+..++.+||+||+++|+|||+||+||||||+|+||+||||||+++|..|
T Consensus         4 ~~~t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f~~d   83 (137)
T KOG1745|consen    4 TKQTARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTD   83 (137)
T ss_pred             CCcccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhccccc
Confidence            45677888999999999988887766 34456678899999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         188 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       188 ~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      +|||+.||.|||||+|+|||+||||+||||+|||||||||+||||+.+||+.
T Consensus        84 Lrfqs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTimpkdiQlArrirg~  135 (137)
T KOG1745|consen   84 LRFQSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE  135 (137)
T ss_pred             ceehHHHHHHHHHHHHHHHHHhccccchhhhccceeEecccceehhhhcccC
Confidence            9999999999999999999999999999999999999999999999999975

>PLN00160 histone H3; Provisional

Probab=100.00  E-value=2.7e-44  Score=295.73  Aligned_cols=95  Identities=61%  Similarity=0.937  Sum_probs=91.3

Q ss_pred             CCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcc-ccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceec
Q psy2783         147 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI  225 (340)
Q Consensus       147 ~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~-~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl  225 (340)
                      ||||++||+|||+||+||+|||||+||+||||||++++. +++|||++||+|||||+|+|||+||||+|+||+|||||||
T Consensus         1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl   80 (97)
T PLN00160          1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTI   80 (97)
T ss_pred             CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc
Confidence            689999999999999999999999999999999999985 5699999999999999999999999999999999999999


Q ss_pred             CCCCcchhhhhhcccc
Q psy2783         226 MPKDIHWPSQWCDNLT  241 (340)
Q Consensus       226 ~~kDm~L~~~i~~~~~  241 (340)
                      |+|||+|+.+|.++.+
T Consensus        81 ~~kD~~L~~rirg~~~   96 (97)
T PLN00160         81 MPKDMQLARRIRGQTR   96 (97)
T ss_pred             chhhHHHHHHhhcccc
Confidence            9999999999987654

>smart00428 H3 Histone H3

Probab=100.00  E-value=6.2e-44  Score=297.47  Aligned_cols=100  Identities=78%  Similarity=1.099  Sum_probs=96.7

Q ss_pred             CCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccc--cccccHHHHHHHHHHHHHHHHHhhhchhhhh
Q psy2783         140 GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCA  217 (340)
Q Consensus       140 ~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~--~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca  217 (340)
                      +.++++||+||++||+|||+||+||+|||||+||+||||||++++.+  ++|||++||+|||||+|+|||++|||+|+||
T Consensus         2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a   81 (105)
T smart00428        2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLA   81 (105)
T ss_pred             CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999987  9999999999999999999999999999999


Q ss_pred             ccCCceecCCCCcchhhhhhcc
Q psy2783         218 IHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       218 ~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      +||||||||++||+|+.+||++
T Consensus        82 ~HAkRvTl~~kDi~La~rir~~  103 (105)
T smart00428       82 IHAKRVTIMPKDIQLARRIRGE  103 (105)
T ss_pred             HHhCCccCcHhhHHHHHHHhcc
Confidence            9999999999999999999975

>PTZ00018 histone H3; Provisional

Probab=100.00  E-value=3.9e-41  Score=291.55  Aligned_cols=115  Identities=92%  Similarity=1.290  Sum_probs=108.8

Q ss_pred             CCCCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccc
Q psy2783           1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ   80 (340)
Q Consensus         1 ta~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q   80 (340)
                      ++++++|+++|+++.++++++++.+.+++.++++||+||+++|+|||+||+||+|||||+||+||||||++++.+++|||
T Consensus         7 ~~~k~~~~~~prk~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~rf~   86 (136)
T PTZ00018          7 TARKSTGGKAPRKQLASKAARKSAPVTGGIKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ   86 (136)
T ss_pred             CccCCCCCCCCcccccccccccCCCCCCCCCCCcccCCchhHHHHHHHHcccchhccccccHHHHHHHHHHHcCCcceee
Confidence            36788899999999988888777777788899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          81 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        81 ~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ++||+|||||+|+|||+||||+|+||+|+||||..
T Consensus        87 ~~al~aLQeaaE~yLv~lfed~~lca~HakRVTl~  121 (136)
T PTZ00018         87 SSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIM  121 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHhhcceecc
Confidence            99999999999999999999999999999999985

>PLN00121 histone H3; Provisional

Probab=100.00  E-value=5.4e-41  Score=290.66  Aligned_cols=115  Identities=94%  Similarity=1.294  Sum_probs=109.2

Q ss_pred             CCCCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccc
Q psy2783           1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ   80 (340)
Q Consensus         1 ta~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q   80 (340)
                      ++++++|+++|+++.++++.+++.+..++.++++||+||+++|+|||+||+||+|||||+||+||||||++++.+++|||
T Consensus         7 ~~~k~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~r~rpGt~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~Rf~   86 (136)
T PLN00121          7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ   86 (136)
T ss_pred             CccCCCCCCCCcccccccccccCCCCCCCCCCCcccCchhHHHHHHHHhccccccccccccHHHHHHHHHHHhCccceee
Confidence            36788999999999988888887777788899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          81 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        81 ~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ++||+|||||+|+|||+||||+|+||+|+||||..
T Consensus        87 ~~Al~ALQeaaE~yLv~lfed~~lca~HakRVTl~  121 (136)
T PLN00121         87 SSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIM  121 (136)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHhcceecc
Confidence            99999999999999999999999999999999985

>PLN00161 histone H3; Provisional

Probab=100.00  E-value=1.3e-39  Score=281.31  Aligned_cols=107  Identities=60%  Similarity=0.908  Sum_probs=97.2

Q ss_pred             CCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcc-cccccch
Q psy2783           3 RKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQS   81 (340)
Q Consensus         3 ~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~-~~~r~q~   81 (340)
                      +++++|++|++.+..+      ...++.++++||+||++||+|||+||+||+|||||+||+||||||++++. +++|||+
T Consensus         8 ~~~~~~~~~~~~~~~~------~~~~~~kk~~r~rpGtvaLrEIR~yQkst~lLIpklPF~RLVREI~~~~~~~~~Rfq~   81 (135)
T PLN00161          8 KRFRKGKKPQKEASGV------TRQELDKKPHRYRPGTVALREIRKYQKSTELLIRKLPFARLVREISNEMLREPFRWTA   81 (135)
T ss_pred             ccccCCCCCcccCCCC------CCCCCCCCCccCCCcchHHHHHHHHccccccccccccHHHHHHHHHHhcCCCCcEeeH
Confidence            5667888888776553      24466788999999999999999999999999999999999999999986 5899999


Q ss_pred             HHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          82 SAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        82 ~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +||+|||||+|+|||+||||+|+||+|+||||..
T Consensus        82 ~Al~ALQEAsEayLV~lFeda~lcaiHAkRVTlm  115 (135)
T PLN00161         82 EALLALQEATEDFLVHLFEDCNLCAIHAKRVTIM  115 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence            9999999999999999999999999999999985

>KOG1745|consensus

Probab=100.00  E-value=6.8e-39  Score=277.01  Aligned_cols=115  Identities=90%  Similarity=1.240  Sum_probs=107.7

Q ss_pred             CCCCCCCCCCCCcchhhhhcccCC-CCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhccccccc
Q psy2783           1 TARKSTGGKAPRKQLATKAARKSA-PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRF   79 (340)
Q Consensus         1 ta~k~~g~kaprk~~a~k~a~ks~-p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~   79 (340)
                      +++++.++++|++..+.+..++.+ +..+...+++||+||+++|+|||+||+||||||+|+||+||||||.++|.+|+||
T Consensus         7 t~~k~~~~~~~r~~~a~~~~~~~~~~~~~~~~k~~r~rpg~~al~eirkyQkstdLlI~K~PFqRlvrei~q~f~~dLrf   86 (137)
T KOG1745|consen    7 TARKSTGGKAPRKQLAGKAARKSAAPRTGRVKKPHRYRPGTVALREIRKYQKSTDLLIRKLPFQRLVREIAQDFKTDLRF   86 (137)
T ss_pred             ccccccCCCCCccccccccccccccccccccCccccccCchHHHHHHHHHHhhhHHHhhcCcHHHHhHHHHhccccccee
Confidence            467889999999999998887763 4456678899999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          80 QSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        80 q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      |+.||.|||||+|+|||+||||+||||+||||||..
T Consensus        87 qs~Ai~ALQeA~EayLv~LfEdtnlcAihAkRVTim  122 (137)
T KOG1745|consen   87 QSSAIAALQEAAEAYLVGLFEDTNLCAIHAKRVTIM  122 (137)
T ss_pred             hHHHHHHHHHHHHHHHHHhccccchhhhccceeEec
Confidence            999999999999999999999999999999999986

>PLN00160 histone H3; Provisional

Probab=100.00  E-value=2.3e-36  Score=248.78  Aligned_cols=80  Identities=64%  Similarity=0.975  Sum_probs=77.4

Q ss_pred             cCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcc-cccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783          36 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK-TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR  114 (340)
Q Consensus        36 ~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~-~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr  114 (340)
                      |+||++||+|||+||+||+|||||+||+||||||++++. +++|||++||+|||||||+|||+||||+|+||+||||||.
T Consensus         1 ~rpGt~aLrEIR~yQkst~lLI~k~pF~RLVREI~~~~~~~~~Rfq~~Al~ALQeAsEayLv~lfed~~lca~HakRVTl   80 (97)
T PLN00160          1 MRPGEKALKEIKMYQKSTDLLIRRLPFARLVREIQMEMSREAYRWQGSAILALQEAAEAHLVGLFEDSNLCAIHGKRVTI   80 (97)
T ss_pred             CCCccHHHHHHHHHccchhhhhccccHHHHHHHHHHHcCCCCcEeeHHHHHHHHHHHHHHHHHHHhhhHHHHHHhccccc
Confidence            689999999999999999999999999999999999986 5699999999999999999999999999999999999998


Q ss_pred             c
Q psy2783         115 K  115 (340)
Q Consensus       115 K  115 (340)
                      .
T Consensus        81 ~   81 (97)
T PLN00160         81 M   81 (97)
T ss_pred             c
Confidence            5

>smart00428 H3 Histone H3

Probab=100.00  E-value=2.9e-36  Score=251.50  Aligned_cols=87  Identities=80%  Similarity=1.126  Sum_probs=84.0

Q ss_pred             CCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhccc--ccccchHHHHHHHHHHHHHhhhhcccccccc
Q psy2783          29 GVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCA  106 (340)
Q Consensus        29 ~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~--~~r~q~~Al~ALQeAaEayLv~LFEds~lca  106 (340)
                      +.++++||+||++||+|||+||+||+|||||+||+||||||++++.+  ++|||.+|++|||||+|+|||++|||+|+||
T Consensus         2 ~~~~~~r~rpg~~aLrEIr~yQkst~lLI~k~pF~RLVREI~~~~~~~~~~R~~~~Al~aLQeasE~ylv~lfeda~~~a   81 (105)
T smart00428        2 GKTKHRRYRPGQVALREIRKYQKSTDLLIRKAPFQRLVREIAQKFTTGVDLRFQSSAIMALQEAAEAYLVGLFEDTNLLA   81 (105)
T ss_pred             CCCCCcCCCCcchHHHHHHHHccCcccccccccHHHHHHHHHHHcCCCCCceeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778999999999999999999999999999999999999999987  9999999999999999999999999999999


Q ss_pred             ccccccccc
Q psy2783         107 IHAKRTARK  115 (340)
Q Consensus       107 iHakRvtrK  115 (340)
                      +||||||.+
T Consensus        82 ~HAkRvTl~   90 (105)
T smart00428       82 IHAKRVTIM   90 (105)
T ss_pred             HHhCCccCc
Confidence            999999985

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=99.85  E-value=5.8e-22  Score=161.93  Aligned_cols=85  Identities=46%  Similarity=0.651  Sum_probs=81.5

Q ss_pred             CCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCC
Q psy2783         149 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPK  228 (340)
Q Consensus       149 pg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~k  228 (340)
                      ||.+.++|||+||++++++||++||.|++|+...+     ||+.+|+++||++.|.|++.++||++.||.|++|+||+++
T Consensus         1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~~~   75 (91)
T COG2036           1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVKAE   75 (91)
T ss_pred             CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHH
Confidence            68899999999999999999999999999999876     9999999999999999999999999999999999999999


Q ss_pred             Ccchhhhhhc
Q psy2783         229 DIHWPSQWCD  238 (340)
Q Consensus       229 Dm~L~~~i~~  238 (340)
                      ||+|+..+.+
T Consensus        76 DI~la~~~~~   85 (91)
T COG2036          76 DIKLALKRLG   85 (91)
T ss_pred             HHHHHHHHhc
Confidence            9999987654

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.72  E-value=3e-18  Score=132.27  Aligned_cols=75  Identities=41%  Similarity=0.574  Sum_probs=71.8

Q ss_pred             hhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783         163 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       163 st~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~  237 (340)
                      +++.+||+.||.|+++||..++..++||+.+|+++||+++|.|++.+||+|+.||.|+||+||+++||+++.+++
T Consensus         1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~~~DI~~A~r~~   75 (75)
T PF00125_consen    1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTITPRDIQLAVRID   75 (75)
T ss_dssp             HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEGHHHHHHHHHHT
T ss_pred             CcccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEecHHHHHHHHhcC
Confidence            477899999999999999999887799999999999999999999999999999999999999999999999875

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>COG2036 HHT1 Histones H3 and H4 [Chromatin structure and dynamics]

Probab=99.66  E-value=3.7e-17  Score=133.76  Aligned_cols=73  Identities=51%  Similarity=0.724  Sum_probs=70.9

Q ss_pred             CCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          38 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        38 pg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ||..+++||++||++++++||++||.|++|+...+     ||+.+|+++||++.|.|++.++||++.||.|++|.|++
T Consensus         1 ~~~~~~~~~r~~~~~~~~~Lp~apv~Ri~r~~~~~-----Rvs~~A~~~l~~~~e~~~~~i~~~A~~~A~ha~RKTV~   73 (91)
T COG2036           1 PGAVGLKEIRRYQRSTDLLLPKAPVRRILRKAGAE-----RVSSSAIEELQEALEEYLEEIAEDAVELAEHAKRKTVK   73 (91)
T ss_pred             CCcchHHHHHhhhhhhhhhcCchHHHHHHHHHhHH-----HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec
Confidence            68899999999999999999999999999999886     99999999999999999999999999999999999986

>PF00125 Histone: Core histone H2A/H2B/H3/H4 histone h2a signature histone h2b signature histone h3 signature histone h4 signature; InterPro: IPR007125 The core histones together with some other DNA binding proteins appear to form a superfamily defined by a common fold and distant sequence similarities [, ]

Probab=99.25  E-value=2.8e-12  Score=98.96  Aligned_cols=64  Identities=41%  Similarity=0.563  Sum_probs=60.8

Q ss_pred             chhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          52 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        52 st~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +|+.+||+.||.|+++||..++..+++|+.+|+.+||++.|+|++.+||+++.||.|+||.|..
T Consensus         1 ~~~~~~~~~~~~r~~r~i~~~~~~~~ris~~a~~~L~~~~E~~~~~il~~A~~~a~~~kR~tI~   64 (75)
T PF00125_consen    1 RTRRLIPKFPFSRLLREIGEEILSKYRISSEALVALQSVLEYLLVEILEEAGNLARHAKRKTIT   64 (75)
T ss_dssp             HHSHSSSHHHHHHHHHHHHHTTSSSSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTBSEEG
T ss_pred             CcccccCceEEeeeeehhhcccccccccccccchhhhhhhhhhhhhhhhHHHHHHhhcCCcEec
Confidence            4678999999999999999998878999999999999999999999999999999999999975

Some proteins contain local homology domains related to the histone fold [].; GO: 0003677 DNA binding; PDB: 2YFW_D 2YFV_B 1U35_H 2F8N_D 2PYO_D 2NQB_D 3AN2_C 3AZJ_C 3AV1_G 3AZM_G ....

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=98.88  E-value=1.6e-09  Score=84.71  Aligned_cols=58  Identities=19%  Similarity=0.243  Sum_probs=51.7

Q ss_pred             HHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         179 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       179 EI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      |++.+.....|++.+|.++||+.+|+|+.++++++..||.|++|.||+++||+|+..-
T Consensus         9 ~lv~~id~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~~~Di~l~l~r   66 (72)
T cd07981           9 ELLKEIDPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLEVKDVQLHLER   66 (72)
T ss_pred             HHHHhhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence            4444445569999999999999999999999999999999999999999999999763

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=97.66  E-value=4.3e-05  Score=62.28  Aligned_cols=72  Identities=21%  Similarity=0.221  Sum_probs=62.4

Q ss_pred             hhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783         161 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       161 Qkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~  237 (340)
                      ++.+---||+.|..||+|.-     .--|+..++.+.|.++.|.||-++..|+..++-||+|-||...|+.+++.-.
T Consensus         7 ~~~~~~gi~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt~~DV~~alkr~   78 (85)
T cd00076           7 LRDNIKGITKPAIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   78 (85)
T ss_pred             HHHhhccCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHC
Confidence            34444459999999998753     3569999999999999999999999999999999999999999999987643

>cd07981 TAF12 TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=97.63  E-value=5e-05  Score=59.45  Aligned_cols=50  Identities=22%  Similarity=0.304  Sum_probs=43.2

Q ss_pred             hhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          62 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        62 F~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      -+.||++|    ....+++.+|.++||+.+|+|+..+++++..||.|++|.|..
T Consensus         7 l~~lv~~i----d~~~~~~~da~~~l~~~~e~fv~~v~~~a~~lAkHr~~~tv~   56 (72)
T cd07981           7 LQELLKEI----DPREQLDPDVEELLLEIADDFVDDVVEDACRLAKHRKSDTLE   56 (72)
T ss_pred             HHHHHHhh----CCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            34455555    456999999999999999999999999999999999999864

The TATA Binding Protein (TBP) Associated Factor 12 (TAF12) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of the seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs function such as serving as activator-bind

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=97.50  E-value=9.3e-05  Score=56.09  Aligned_cols=55  Identities=27%  Similarity=0.282  Sum_probs=46.3

Q ss_pred             HHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchh
Q psy2783         179 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWP  233 (340)
Q Consensus       179 EI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~  233 (340)
                      .|+....+..++..+|.++|+.|+|.|+..|-..++..+.+.+|-||++.|+..+
T Consensus        10 ri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~~~Dv~~A   64 (65)
T PF00808_consen   10 RIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTITYEDVAKA   64 (65)
T ss_dssp             HHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-HHHHHHH
T ss_pred             HHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHH
Confidence            3344335567899999999999999999999999999999999999999998754

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>smart00803 TAF TATA box binding protein associated factor

Probab=97.49  E-value=0.0001  Score=57.06  Aligned_cols=63  Identities=17%  Similarity=0.170  Sum_probs=53.9

Q ss_pred             hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhh
Q psy2783         167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPS  234 (340)
Q Consensus       167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~  234 (340)
                      .+|+.|..|+.+.+    + --|...+|..+|.+..|.++-++.+++..++-|++|-||+..|+.+++
T Consensus         2 ~~p~~~i~ria~~~----G-i~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt~~DI~~Al   64 (65)
T smart00803        2 WLPKETIKDVAESL----G-IGNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLTTSDIDSAL   64 (65)
T ss_pred             CCCHHHHHHHHHHC----C-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecHHHHHHHh
Confidence            46667766666543    3 238999999999999999999999999999999999999999998875

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>PLN00035 histone H4; Provisional

Probab=97.47  E-value=8.5e-05  Score=62.60  Aligned_cols=67  Identities=19%  Similarity=0.184  Sum_probs=60.2

Q ss_pred             hhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783         166 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       166 lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~  237 (340)
                      .=||+.|-.||+|.-     .--|+..+|.+.|.++.|.||-.+..|+...+-||+|-||...|+.+++.-.
T Consensus        28 ~~ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~~~DV~~Alkr~   94 (103)
T PLN00035         28 QGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVTAMDVVYALKRQ   94 (103)
T ss_pred             ccCCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHc
Confidence            349999999998754     3569999999999999999999999999999999999999999999987643

>PTZ00015 histone H4; Provisional

Probab=97.37  E-value=0.00012  Score=61.61  Aligned_cols=72  Identities=18%  Similarity=0.178  Sum_probs=62.2

Q ss_pred             hhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         160 YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       160 yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      .++...--||+.|-.||+|.-     .--|+..++.+.|.++.|.||-.+..|+..+|-||+|-||...|+.+++.-
T Consensus        23 ~~r~~i~gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt~~DV~~AlKr   94 (102)
T PTZ00015         23 VLRDNIRGITKGAIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVTAMDVVYALKR   94 (102)
T ss_pred             HHhhcccCCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHh
Confidence            334444569999999998753     356999999999999999999999999999999999999999999998754

>smart00417 H4 Histone H4

Probab=97.32  E-value=0.00023  Score=56.70  Aligned_cols=68  Identities=19%  Similarity=0.218  Sum_probs=58.6

Q ss_pred             hhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcch
Q psy2783         160 YQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW  232 (340)
Q Consensus       160 yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L  232 (340)
                      .++.+---||+.|..||+|.     ..--|+..++.+.|.++.|.||-.+..|+..++-|++|-||...|+..
T Consensus         6 ~~~d~i~gI~k~~IrRLaRr-----~GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~~~DV~~   73 (74)
T smart00417        6 VLRDNIQGITKPAIRRLARR-----GGVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVTAMDVVY   73 (74)
T ss_pred             HHHhhhcCCCHHHHHHHHHH-----cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHhee
Confidence            33444446999999999874     245699999999999999999999999999999999999999999864

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=97.01  E-value=0.00087  Score=57.29  Aligned_cols=66  Identities=17%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             hhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         173 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       173 F~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      ..++|..|+.+.+ .-+++..+...|-|-+|.|...+..||...|-||+|-||...|++|+...+.+
T Consensus         3 d~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~~eDV~lAi~~r~~   68 (117)
T cd07979           3 DARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANIDADDVKLAIQSRVD   68 (117)
T ss_pred             HHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence            3578888887763 45899999999999999999999999999999999999999999999876544

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>KOG0870|consensus

Probab=96.95  E-value=0.00046  Score=62.55  Aligned_cols=69  Identities=23%  Similarity=0.289  Sum_probs=64.1

Q ss_pred             hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhh
Q psy2783         164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPS  234 (340)
Q Consensus       164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~  234 (340)
                      .+|.+|++--.|||+|++.+.  ++-++.+|+.||++||--|+..|-..|+-.|.-.+|-||++.|+-=++
T Consensus         7 ~dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~sadDVl~aL   75 (172)
T KOG0870|consen    7 EDLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTISADDVLKAL   75 (172)
T ss_pred             HHhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccHHHHHHHH
Confidence            478999999999999999886  789999999999999999999999999999999999999999985543

>PF15630 CENP-S: Kinetochore component CENP-S; PDB: 4DRA_C 4DRB_H 3V9R_C

Probab=96.66  E-value=0.0012  Score=52.81  Aligned_cols=66  Identities=23%  Similarity=0.190  Sum_probs=54.0

Q ss_pred             hhHHHHHHHHhc--cccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhc
Q psy2783         173 FQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCD  238 (340)
Q Consensus       173 F~RLVrEI~~~~--~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~  238 (340)
                      +.--|-.|+++.  ..++.|++..+.||=|-+=.++..+=.|--..|-||+|-||++.|+.|..|-.+
T Consensus         7 l~~~v~ki~ee~~~~~~~~~s~~~i~al~ELv~~q~~~~a~DLe~FAkHA~R~tI~~dDV~Ll~Rrn~   74 (76)
T PF15630_consen    7 LWYTVGKIVEEEAKEKGVEVSPQFIAALTELVYKQLENLAKDLEAFAKHAGRSTINMDDVKLLARRNP   74 (76)
T ss_dssp             HHHHHHHHHHHCCCCTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHTTT-H
T ss_pred             HHHHHHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeecHHHHHHHhhcCC
Confidence            444566777775  368899999999999999999999999999999999999999999999987443

>PF03847 TFIID_20kDa: Transcription initiation factor TFIID subunit A; InterPro: IPR003228 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=96.38  E-value=0.0032  Score=49.27  Aligned_cols=58  Identities=16%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             HHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         178 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       178 rEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      .|++.+...+..+..++.++|.+.|+.|+.+..+.|..+|-|.+-=||.++|+++++.
T Consensus         6 ~~Lv~~iDp~~~ld~~vee~Ll~laddFv~~v~~~ac~lAKhR~s~tle~~Dv~~~Le   63 (68)
T PF03847_consen    6 QELVKQIDPNEKLDPDVEELLLELADDFVDDVVSFACRLAKHRKSSTLEVKDVQLHLE   63 (68)
T ss_dssp             HHHHHCC-SS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence            3444455678999999999999999999999999999999999999999999999875

; GO: 0006352 transcription initiation, DNA-dependent, 0005669 transcription factor TFIID complex; PDB: 1H3O_B.

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins

Probab=95.67  E-value=0.008  Score=47.39  Aligned_cols=47  Identities=23%  Similarity=0.204  Sum_probs=45.0

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         189 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       189 rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      +.+.+|+++|.+..|.||..+-+.+...+-|++|.+..+.|+.++..
T Consensus        23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~~~~Dv~~Al~   69 (77)
T smart00576       23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEPNLGDVVLALE   69 (77)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            89999999999999999999999999999999999999999998854

subdomain of archael histone-like transcription factors

>KOG1142|consensus

Probab=95.60  E-value=0.013  Score=56.45  Aligned_cols=78  Identities=17%  Similarity=0.227  Sum_probs=67.2

Q ss_pred             hhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhc
Q psy2783         159 RYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCD  238 (340)
Q Consensus       159 ~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~  238 (340)
                      .++-+++.++-|.-...||++|    ..+--+..++-+.|.|.|++|+-++-.-+-.+|.|.|--||.++||+|++.--=
T Consensus       146 ~~~~~~~~il~k~kl~dLvqqI----d~~~~LD~dVedlLleiADdFV~sii~~sC~LAKHRKsdtlEvrDIqLhLEr~~  221 (258)
T KOG1142|consen  146 QDEPGNNPILSKRKLDDLVQQI----DGTTKLDDDVEDLLLEIADDFVSSIIHRSCKLAKHRKSDTVEVRDIQLHLERNF  221 (258)
T ss_pred             cccCCCCccccccchhHHHHhh----cCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhheeeeeeccc
Confidence            6677888888888888888888    335567789999999999999999999999999999999999999999976433


Q ss_pred             cc
Q psy2783         239 NL  240 (340)
Q Consensus       239 ~~  240 (340)
                      ||
T Consensus       222 Nm  223 (258)
T KOG1142|consen  222 NM  223 (258)
T ss_pred             cc
Confidence            33

>PF02969 TAF: TATA box binding protein associated factor (TAF); InterPro: IPR004823 The TATA box binding protein associated factor (TAF) is part of the transcription initiation factor TFIID multimeric protein complex

Probab=95.41  E-value=0.015  Score=45.44  Aligned_cols=59  Identities=24%  Similarity=0.290  Sum_probs=46.4

Q ss_pred             HHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         176 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       176 LVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      -|+.|++..+- -....++..+|-+-+|.-|-.+.++|..++.|+||-+|+..|+..+++
T Consensus         8 svk~iAes~Gi-~~l~de~a~~La~dveyrlreiiq~a~kfm~hskR~~Lt~~Di~~ALr   66 (66)
T PF02969_consen    8 SVKDIAESLGI-SNLSDEAAKALAEDVEYRLREIIQEALKFMRHSKRTKLTTDDINSALR   66 (66)
T ss_dssp             HHHHHHHHTT----B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHH-
T ss_pred             HHHHHHHHcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHhC
Confidence            46667766542 147899999999999999999999999999999999999999988753

TFIID plays a central role in mediating promoter responses to various activators and repressors. It binds tightly to TAFII-250 and directly interacts with TAFII-40. TFIID is composed of TATA binding protein (TBP)and a number of TBP-associated factors (TAFS). TAF proteins adopt a histone-like fold.; GO: 0006352 transcription initiation, DNA-dependent, 0005634 nucleus; PDB: 1TAF_B.

>PF15511 CENP-T: Centromere kinetochore component CENP-T; PDB: 3B0D_T 3B0C_T 3VH5_T 3VH6_T

Probab=94.75  E-value=0.023  Score=57.94  Aligned_cols=54  Identities=33%  Similarity=0.464  Sum_probs=41.6

Q ss_pred             HHHHHHHhc-----cccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCC
Q psy2783         176 LVREIAQDF-----KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD  229 (340)
Q Consensus       176 LVrEI~~~~-----~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kD  229 (340)
                      +||.+++.|     ....++.++||+||+.|+|-|.-+|=+|--..|-||+|-||...|
T Consensus       356 ~vK~la~~~ak~s~~sK~kiskdal~aleqasdwfFeQl~dDL~aYA~HAgRKTIdesD  414 (414)
T PF15511_consen  356 VVKKLAQHFAKSSGGSKMKISKDALEALEQASDWFFEQLGDDLEAYAKHAGRKTIDESD  414 (414)
T ss_dssp             HHHHHHHHHH-------S-B-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SEE-HHH
T ss_pred             HHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC
Confidence            455555554     357899999999999999999999999999999999999998765

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=94.01  E-value=0.054  Score=53.72  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=56.0

Q ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         175 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       175 RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      ..|+.|+...+ --+...+|..+|-+-+|.++-.+.++|..++.|+||-||+..||.++.+....-
T Consensus         3 ~~i~~ia~~~G-i~~~~~~a~~~La~~~e~~~~~i~~~A~k~~~hskR~~l~~~Di~~Al~~~n~e   67 (343)
T cd08050           3 ESIKLIAESLG-IDSLSDEVAQLLAEDVEYRLREIIQEAAKFMRHSKRRKLTTSDVNHALRLRNVE   67 (343)
T ss_pred             hHHHHHHHHcC-CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHHHhCCC
Confidence            35677777653 228899999999999999999999999999999999999999999998875443

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF02291 TFIID-31kDa: Transcription initiation factor IID, 31kD subunit; InterPro: IPR003162 Human transcription initiation factor TFIID is composed of the TATA-binding polypeptide (TBP) and at least 13 TBP-associated factors (TAFs) that collectively or individually are involved in activator-dependent transcription []

Probab=93.95  E-value=0.048  Score=47.69  Aligned_cols=61  Identities=26%  Similarity=0.353  Sum_probs=50.6

Q ss_pred             hHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       174 ~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      .++|..|+.+.+- -.|+..++.-|-|=+=.|...+++||...+-||+|-+|...|++|+..
T Consensus        15 a~~i~~iL~~~Gv-~~yeprVv~qLLEfayRYt~~vL~DA~~ya~hA~~~~i~~~DVrLAi~   75 (129)
T PF02291_consen   15 ARVIHLILKSMGV-TEYEPRVVNQLLEFAYRYTSDVLEDAQVYADHAGRSTIDADDVRLAIQ   75 (129)
T ss_dssp             HHHHHHHHHHTT----B-THHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SSB-HHHHHHHHH
T ss_pred             HHHHHHHHHHcCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCChHHHHHHHH
Confidence            4788888887752 247999999999999999999999999999999999999999999966

TAFII-31 protein is a transcriptional coactivator of the p53 protein [].; GO: 0006352 transcription initiation, DNA-dependent; PDB: 1TAF_A.

>cd00074 H2A Histone 2A; H2A is a subunit of the nucleosome

Probab=93.31  E-value=0.035  Score=47.66  Aligned_cols=72  Identities=17%  Similarity=0.150  Sum_probs=62.1

Q ss_pred             hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .|.+|-.++.|+.++=    ....|...+|...|-..-|.+...++|-+...+-|.++-+|+|+|++|+.+=.++|
T Consensus        18 gL~fPV~ri~R~Lk~~----~~a~RVs~~A~VyLaAvLEYL~aEIlelA~n~ak~~k~krItp~hi~lAi~nD~EL   89 (115)
T cd00074          18 GLQFPVGRIHRYLKKG----RYAERVGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKKRITPRHLQLAVRNDEEL   89 (115)
T ss_pred             CccCcHHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHhccHHH
Confidence            5789999999998752    12379999999999999999999999999999999999999999999996654544

The nucleosome is an octamer containing two H2A, H2B, H3, and H4 subunits. The H2A subunit performs essential roles in maintaining structural integrity of the nucleosome, chromatin condensation, and binding of specific chromatin-associated proteins.

>smart00417 H4 Histone H4

Probab=92.73  E-value=0.082  Score=42.24  Aligned_cols=55  Identities=20%  Similarity=0.189  Sum_probs=49.3

Q ss_pred             hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      -||+.|..||+|.=     .--|+..++.+.|.+..|.||-.+..|+..++-|++|-|.+
T Consensus        13 gI~k~~IrRLaRr~-----GvkRIS~~~y~elr~vle~~l~~I~rdav~~a~ha~RKTV~   67 (74)
T smart00417       13 GITKPAIRRLARRG-----GVKRISGLIYDETRNVLKSFLENVVRDAVTYTEHARRKTVT   67 (74)
T ss_pred             CCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            48999999999732     44699999999999999999999999999999999999875

>cd00076 H4 Histone H4, one of the four histones, along with H2A, H2B and H3, which forms the eukaryotic nucleosome core; along with H3, it plays a central role in nucleosome formation; histones bind to DNA and wrap the genetic material into "beads on a string" in which DNA (the string) is wrapped around small blobs of histones (the beads) at regular intervals; play a role in the inheritance of specialized chromosome structures and the control of gene activity; defects in the establishment of proper chromosome structure by histones may activate or silence genes aberrantly and thus lead to disease; the sequence of histone H4 has remained almost invariant in more than 2 billion years of evolution

Probab=92.52  E-value=0.073  Score=43.51  Aligned_cols=55  Identities=24%  Similarity=0.251  Sum_probs=49.5

Q ss_pred             hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      -||+.|..||+|.-     .--|+..++.+++.++.|.||-.+..|+...+-|++|-|.+
T Consensus        13 gi~k~~I~RLarr~-----GvkRIS~d~y~e~~~~l~~~l~~I~~dav~ya~Ha~RKTVt   67 (85)
T cd00076          13 GITKPAIRRLARRG-----GVKRISGGVYDEVRNVLKSYLEDVIRDAVTYTEHAKRKTVT   67 (85)
T ss_pred             cCCHHHHHHHHHHc-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence            38999999999743     35799999999999999999999999999999999998875

>smart00803 TAF TATA box binding protein associated factor

Probab=92.28  E-value=0.13  Score=39.76  Aligned_cols=55  Identities=16%  Similarity=0.161  Sum_probs=44.4

Q ss_pred             hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      .+|+.|..|+.+.    .+- -+...++..+|.+..|.++-.+.+|+..++-|+||.|.+
T Consensus         2 ~~p~~~i~ria~~----~Gi-~ris~~a~~~l~~~~e~rl~~i~~~A~k~~~hakRktlt   56 (65)
T smart00803        2 WLPKETIKDVAES----LGI-GNLSDEAAKLLAEDVEYRIKEIVQEALKFMRHSKRTTLT   56 (65)
T ss_pred             CCCHHHHHHHHHH----CCC-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeec
Confidence            3566665565543    332 388899999999999999999999999999999998764

TAFs (TATA box binding protein associated factors) are part of the transcription initiation factor TFIID multimeric protein complex. TFIID is composed of the TATA box binding protein (TBP) and a number of TAFs. The TAFs provide binding sites for many different transcriptional activators and co-activators that modulate transcription initiation by Pol II. TAF proteins adopt a histone-like fold.

>PLN00035 histone H4; Provisional

Probab=92.25  E-value=0.084  Score=44.72  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=49.1

Q ss_pred             hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ||+.|-.||+|.-     .--|...++.++|.++.|.||-.+..|+...+-|++|-|.+
T Consensus        30 ipk~~IrRLARr~-----GvkRIS~~ay~elr~vle~~l~~I~~dav~ya~HA~RKTV~   83 (103)
T PLN00035         30 ITKPAIRRLARRG-----GVKRISGLIYEETRGVLKIFLENVIRDAVTYTEHARRKTVT   83 (103)
T ss_pred             CCHHHHHHHHHHc-----CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCc
Confidence            8999999999754     35699999999999999999999999999999999999875

>PF00808 CBFD_NFYB_HMF: Histone-like transcription factor (CBF/NF-Y) and archaeal histone; InterPro: IPR003958 The CCAAT-binding factor (CBF) is a mammalian transcription factor that binds to a CCAAT motif in the promoters of a wide variety of genes, including type I collagen and albumin

Probab=91.99  E-value=0.19  Score=37.90  Aligned_cols=49  Identities=24%  Similarity=0.282  Sum_probs=39.2

Q ss_pred             HHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          67 REIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        67 REI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +.|+.......+...+|.++++.|+|.|+..|-.+++..+.+.+|-|..
T Consensus         9 kri~k~~~~~~~vs~ea~~~i~~a~e~Fi~~l~~~A~~~a~~~~rkti~   57 (65)
T PF00808_consen    9 KRIMKSDPDVMRVSKEAVEAIAKAAEEFIQYLAKEANEIAQRDKRKTIT   57 (65)
T ss_dssp             HHHHHHTSTTSEE-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEE-
T ss_pred             HHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence            3344433556789999999999999999999999999999988887753

The factor is a heteromeric complex of A and B subunits, both of which are required for DNA-binding [, ]. The subunits can interact in the absence of DNA-binding, conserved regions in each being important in mediating this interaction. The A subunit can be split into 3 domains on the basis of sequence similarity, a non-conserved N-terminal 'A domain'; a highly-conserved central 'B domain' involved in DNA-binding; and a C-terminal 'C domain', which contains a number of glutamine and acidic residues involved in protein-protein interactions []. The A subunit shows striking similarity to the HAP3 subunit of the yeast CCAAT-binding heterotrimeric transcription factor [, ]. The Kluyveromyces lactis HAP3 protein has been predicted to contain a 4-cysteine zinc finger, which is thought to be present in similar HAP3 and CBF subunit A proteins, in which the third cysteine is replaced by a serine []. This domain is found in the CCAAT transcription factor and archaeal histones.; GO: 0043565 sequence-specific DNA binding, 0005622 intracellular; PDB: 1F1E_A 2BYM_D 2BYK_D 1HTA_A 1B67_A 1JFI_B 1KU5_B 1N1J_A 1BFM_A 1B6W_A ....

>KOG0870|consensus

Probab=91.78  E-value=0.11  Score=47.41  Aligned_cols=60  Identities=22%  Similarity=0.295  Sum_probs=54.4

Q ss_pred             hhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783          53 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR  114 (340)
Q Consensus        53 t~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr  114 (340)
                      .+|.+|++--.|||+|++.++  +..++.+|+.|++.||--|+..|-..++-.|--.+|-|.
T Consensus         7 ~dl~lP~AiI~rlvke~l~E~--~vsisKeA~~Ai~raAtVFv~~Lts~s~e~A~~q~rKt~   66 (172)
T KOG0870|consen    7 EDLNLPNAIITRLVKEVLPES--NVSISKEARLAIARAATVFVIFLTSVSNEIAKDQKRKTI   66 (172)
T ss_pred             HHhhccHHHHHHHHHHhCccc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence            478999999999999999987  789999999999999999999999999988888887665

>PTZ00015 histone H4; Provisional

Probab=89.64  E-value=0.2  Score=42.32  Aligned_cols=55  Identities=20%  Similarity=0.187  Sum_probs=49.1

Q ss_pred             hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      -|++.|-.||+|.-     .--|...++.+.+.+..|.||-.+..|+..+|-|++|-|.+
T Consensus        30 gI~k~~IrRLarr~-----GvkRIS~d~y~e~r~vle~~l~~I~rdav~~aeHA~RKTVt   84 (102)
T PTZ00015         30 GITKGAIRRLARRG-----GVKRISGDIYEEVRGVLKAFLENVVRDSTAYTEYARRKTVT   84 (102)
T ss_pred             CCCHHHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            38999999998743     44699999999999999999999999999999999998875

>cd07979 TAF9 TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=82.94  E-value=1.4  Score=37.65  Aligned_cols=53  Identities=15%  Similarity=0.263  Sum_probs=46.0

Q ss_pred             hhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          62 FQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        62 F~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ..++|..|..+.+ .-+++.++...|-|-++.|...+..|+...|-||+|.|..
T Consensus         3 d~~~v~~iLk~~G-v~~~~~~v~~~Lle~~~ry~~~il~dA~~~a~hA~r~tV~   55 (117)
T cd07979           3 DARVIAAILKSMG-ITEYEPRVINQLLEFAYRYTTDVLDDAKVYSEHAGKANID   55 (117)
T ss_pred             HHHHHHHHHHHCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            3578888888763 3589999999999999999999999999999999996653

The TATA Binding Protein (TBP) Associated Factor 9 (TAF9) is one of several TAFs that bind TBP and are involved in forming the TFIID complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAFs orthologs and paralogs. Human TAF9 has a paralogue gene (TAF9L) whi

>PF07524 Bromo_TP: Bromodomain associated; InterPro: IPR006565 This bromodomain is found in eukaryotic transcription factors and PHD domain containing proteins (IPR001965 from INTERPRO)

Probab=81.09  E-value=1.3  Score=34.45  Aligned_cols=49  Identities=22%  Similarity=0.192  Sum_probs=44.9

Q ss_pred             cc-cccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         187 DL-RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       187 ~~-rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      .| ..+.+||+.|-+.++.||..+-..+...+-|++|-...+.|+.++..
T Consensus        20 GF~~~~~~al~~Ltdi~~~yl~~l~~~~~~~ae~~gRt~~~~~Dv~~al~   69 (77)
T PF07524_consen   20 GFDSASPSALDTLTDILQRYLQELGRTAKRYAEHAGRTEPNLQDVEQALE   69 (77)
T ss_pred             CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            45 68999999999999999999999999999999999999999987653

The tandem PHD finger-bromodomain is found in many chromatin-associated proteins. It is involved in gene silencing by the human co-repressor KRAB-associated protein 1 (KAP1). The tandem PHD finger-bromodomain of KAP1 has a distinct structure that joins the two protein modules. The first helix, alpha(Z), of an atypical bromodomain forms the central hydrophobic core that anchors the other three helices of the bromodomain on one side and the zinc binding PHD finger on the other []. The Rap1 GTPase-activating protein, Sipa1, is modulated by the cellular bromodomain protein, Brd4. Brd4 belongs to the BET family and is a multifunctional protein involved in transcription, replication, the signal transduction pathway, and cell cycle progression. All of these functions are linked to its association with acetylated chromatin. It has tandem bromodomains []. The dysregulation of the Brd4-associated pathways may play an important role in breast cancer progression []. Bovine papillomavirus type 1 E2 also binds to chromosomes in a complex with Brd4. Interaction with Brd4 is additionally important for E2-mediated transcriptional regulation [, ].

>smart00576 BTP Bromodomain transcription factors and PHD domain containing proteins

Probab=80.69  E-value=2.2  Score=33.50  Aligned_cols=37  Identities=30%  Similarity=0.302  Sum_probs=35.0

Q ss_pred             ccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783          78 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR  114 (340)
Q Consensus        78 r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr  114 (340)
                      +.+.+|+++|.+..|.|+..|=+.+...+-|+.|.+.
T Consensus        23 ~~~~sale~ltdi~~~yl~~l~~~~~~~a~~agR~~~   59 (77)
T smart00576       23 SFQESALETLTDILQSYIQELGRTAHSYAELAGRTEP   59 (77)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence            8899999999999999999999999999999999764

subdomain of archael histone-like transcription factors

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	340
2hio_C	136	Histone Octamer (Chicken), Chromosomal Protein Leng		2e-65
2hio_C	136	Histone Octamer (Chicken), Chromosomal Protein Leng		5e-45
3av1_A	139	The Human Nucleosome Structure Containing The Histo		3e-65
3av1_A	139	The Human Nucleosome Structure Containing The Histo		3e-45
2io5_B	135	Crystal Structure Of The Cia- Histone H3-H4 Complex		3e-65
2io5_B	135	Crystal Structure Of The Cia- Histone H3-H4 Complex		4e-44
3lel_A	136	Structural Insight Into The Sequence-Dependence Of		1e-64
3lel_A	136	Structural Insight Into The Sequence-Dependence Of		4e-45
1kx3_A	135	X-Ray Structure Of The Nucleosome Core Particle, Nc		1e-64
1kx3_A	135	X-Ray Structure Of The Nucleosome Core Particle, Nc		3e-44
2cv5_A	136	Crystal Structure Of Human Nucleosome Core Particle		1e-64
2cv5_A	136	Crystal Structure Of Human Nucleosome Core Particle		7e-45
3afa_A	139	The Human Nucleosome Structure Length = 139		1e-64
3afa_A	139	The Human Nucleosome Structure Length = 139		3e-45
3kxb_A	135	Structural Characterization Of H3k56q Nucleosomes A		3e-64
3kxb_A	135	Structural Characterization Of H3k56q Nucleosomes A		6e-44
3azh_A	139	Crystal Structure Of Human Nucleosome Core Particle		4e-64
3azh_A	139	Crystal Structure Of Human Nucleosome Core Particle		3e-45
3azg_A	139	Crystal Structure Of Human Nucleosome Core Particle		4e-64
3azg_A	139	Crystal Structure Of Human Nucleosome Core Particle		3e-45
3azf_A	139	Crystal Structure Of Human Nucleosome Core Particle		4e-64
3azf_A	139	Crystal Structure Of Human Nucleosome Core Particle		8e-45
3aze_A	139	Crystal Structure Of Human Nucleosome Core Particle		4e-64
3aze_A	139	Crystal Structure Of Human Nucleosome Core Particle		8e-45
3ayw_A	139	Crystal Structure Of Human Nucleosome Core Particle		4e-64
3ayw_A	139	Crystal Structure Of Human Nucleosome Core Particle		8e-45
1f66_A	136	2.6 A Crystal Structure Of A Nucleosome Core Partic		8e-64
1f66_A	136	2.6 A Crystal Structure Of A Nucleosome Core Partic		3e-44
1zla_A	135	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		1e-63
1zla_A	135	X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus L		3e-44
4hga_B	136	Structure Of The Variant Histone H3.3-H4 Heterodime		2e-63
4hga_B	136	Structure Of The Variant Histone H3.3-H4 Heterodime		3e-44
3av2_A	139	The Human Nucleosome Structure Containing The Histo		3e-63
3av2_A	139	The Human Nucleosome Structure Containing The Histo		1e-44
1m18_A	135	Ligand Binding Alters The Structure And Dynamics Of		4e-63
1m18_A	135	Ligand Binding Alters The Structure And Dynamics Of		7e-43
1p3b_A	135	Crystallographic Studies Of Nucleosome Core Particl		5e-63
1p3b_A	135	Crystallographic Studies Of Nucleosome Core Particl		1e-42
3c1c_A	135	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		5e-63
3c1c_A	135	The Effect Of H3 K79 Dimethylation And H4 K20 Trime		7e-44
3a6n_A	139	The Nucleosome Containing A Testis-Specific Histone		5e-63
3a6n_A	139	The Nucleosome Containing A Testis-Specific Histone		2e-44
1p3k_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-62
1p3k_A	135	Crystallographic Studies Of Nucleosome Core Particl		1e-42
1p3m_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-62
1p3m_A	135	Crystallographic Studies Of Nucleosome Core Particl		1e-42
1p3a_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-62
1p3a_A	135	Crystallographic Studies Of Nucleosome Core Particl		1e-42
1p34_A	135	Crystallographic Studies Of Nucleosome Core Particl		3e-62
1p34_A	135	Crystallographic Studies Of Nucleosome Core Particl		1e-42
1p3l_A	135	Crystallographic Studies Of Nucleosome Core Particl		4e-62
1p3l_A	135	Crystallographic Studies Of Nucleosome Core Particl		2e-42
4h9o_A	135	Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length		1e-61
4h9o_A	135	Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length		2e-43
4h9n_A	135	Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 13		2e-60
4h9n_A	135	Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 13		3e-43
4h9s_A	135	Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 13		6e-59
4h9s_A	135	Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 13		6e-42
1id3_A	135	Crystal Structure Of The Yeast Nucleosome Core Part		2e-57
1id3_A	135	Crystal Structure Of The Yeast Nucleosome Core Part		6e-43
1aoi_A	116	Complex Between Nucleosome Core Particle (H3,H4,H2a		5e-56
1aoi_A	116	Complex Between Nucleosome Core Particle (H3,H4,H2a		8e-34
4h9p_A	135	Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length		1e-54
4h9p_A	135	Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length		1e-42
3kwq_A	98	Structural Characterization Of H3k56q Nucleosomes A		2e-45
3kwq_A	98	Structural Characterization Of H3k56q Nucleosomes A		2e-23
1hio_C	93	Histone Octamer (Chicken), Chromosomal Protein, Alp		7e-43
1hio_C	93	Histone Octamer (Chicken), Chromosomal Protein, Alp		4e-20
2hue_B	77	Structure Of The H3-h4 Chaperone Asf1 Bound To Hist		1e-31
2hue_B	77	Structure Of The H3-h4 Chaperone Asf1 Bound To Hist		2e-09
4eo5_B	76	Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76		1e-31
4eo5_B	76	Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76		2e-09
2yfv_A	100	The Heterotrimeric Complex Of Kluyveromyces Lactis		9e-27
2yfv_A	100	The Heterotrimeric Complex Of Kluyveromyces Lactis		5e-09
2yfw_A	92	Heterotetramer Structure Of Kluyveromyces Lactis Cs		3e-24
2yfw_A	92	Heterotetramer Structure Of Kluyveromyces Lactis Cs		2e-06
2l5a_A	235	Structural Basis For Recognition Of Centromere Spec		1e-20
3an2_A	143	The Structure Of The Centromeric Nucleosome Contain		1e-20
3an2_A	143	The Structure Of The Centromeric Nucleosome Contain		7e-06
3r45_A	156	Structure Of A Cenp-A-Histone H4 Heterodimer In Com		1e-20
3r45_A	156	Structure Of A Cenp-A-Histone H4 Heterodimer In Com		6e-06
3nqu_A	140	Crystal Structure Of Partially Trypsinized (Cenp-AH		1e-20
3nqu_A	140	Crystal Structure Of Partially Trypsinized (Cenp-AH		7e-06
3nqj_A	82	Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER Len		3e-15
2ly8_A	121	The Budding Yeast Chaperone Scm3 Recognizes The Par		9e-15
2ly8_A	121	The Budding Yeast Chaperone Scm3 Recognizes The Par		9e-15
4ft4_P	32	Crystal Structure Of Zea Mays Zmet2 In Complex H3(1		1e-08
3n9p_B	32	Cekdm7a From C.Elegans, Complex With H3k4me3k27me2		9e-08
3n9n_B	32	Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 P		9e-08
4hsu_C	30	Crystal Structure Of Lsd2-npac With H3(1-26)in Spac		1e-07
4gu0_E	26	Crystal Structure Of Lsd2 With H3 Length = 26		1e-05
3u5p_I	28	Crystal Structure Of The Complex Of Trim33 Phd-Brom		6e-05
2p5b_I	22	The Complex Structure Of Jmjd2a And Trimethylated H		8e-05
2p5b_I	22	The Complex Structure Of Jmjd2a And Trimethylated H		8e-05
2p5b_I	22	The Complex Structure Of Jmjd2a And Trimethylated H		8e-05
2x4w_B	21	Molecular Basis Of Histone H3k36me3 Recognition By		3e-04
2x4w_B	21	Molecular Basis Of Histone H3k36me3 Recognition By		3e-04
2x4w_B	21	Molecular Basis Of Histone H3k36me3 Recognition By		3e-04
3kv4_B	24	Structure Of Phf8 In Complex With Histone H3 Length		3e-04
3a1b_A	159	Crystal Structure Of The Dnmt3a Add Domain In Compl		4e-04
3avr_B	22	Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H		6e-04
3avr_B	22	Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H		6e-04
3avr_B	22	Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H		6e-04

>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein Length = 136

Iteration: 1
 Score =  245 bits (626), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

>pdb|2HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein Length = 136

Iteration: 1
 Score =  178 bits (451), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89

>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.2 Length = 139

Iteration: 1
 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3AV1|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.2 Length = 139

Iteration: 1
 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92

>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex Length = 135

Iteration: 1
 Score =  245 bits (625), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 120/123 (97%), Positives = 121/123 (98%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|2IO5|B Chain B, Crystal Structure Of The Cia- Histone H3-H4 Complex Length = 135

Iteration: 1
 Score =  175 bits (443), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of Nucleosom Positioning Length = 136

Iteration: 1
 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/123 (96%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

>pdb|3LEL|A Chain A, Structural Insight Into The Sequence-Dependence Of Nucleosom Positioning Length = 136

Iteration: 1
 Score =  178 bits (451), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89

>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 135

Iteration: 1
 Score =  243 bits (620), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/123 (96%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1KX3|A Chain A, X-Ray Structure Of The Nucleosome Core Particle, Ncp146, At 2.0 A Resolution Length = 135

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Length = 136

Iteration: 1
 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/123 (96%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

>pdb|2CV5|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Length = 136

Iteration: 1
 Score =  177 bits (449), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/89 (100%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89

>pdb|3AFA|A Chain A, The Human Nucleosome Structure Length = 139

Iteration: 1
 Score =  243 bits (619), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 119/123 (96%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3AFA|A Chain A, The Human Nucleosome Structure Length = 139

Iteration: 1
 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92

>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleosomal Arrays Length = 135

Iteration: 1
 Score =  241 bits (616), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQESTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|3KXB|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleosomal Arrays Length = 135

Iteration: 1
 Score =  174 bits (441), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQESTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k122q Mutation Length = 139

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMP+D
Sbjct: 68  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPQD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3AZH|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k122q Mutation Length = 139

Iteration: 1
 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92

>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k115q Mutation Length = 139

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHA+RVTIMPKD
Sbjct: 68  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAQRVTIMPKD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3AZG|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k115q Mutation Length = 139

Iteration: 1
 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 90/92 (97%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92

>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k79q Mutation Length = 139

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDF+TDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68  KLPFQRLVREIAQDFQTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3AZF|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k79q Mutation Length = 139

Iteration: 1
 Score =  177 bits (449), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIRKLPFQRLVREIAQDF+TDLRFQSSA
Sbjct: 61  STELLIRKLPFQRLVREIAQDFQTDLRFQSSA 92

>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k64q Mutation Length = 139

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           +LPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68  QLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3AZE|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k64q Mutation Length = 139

Iteration: 1
 Score =  177 bits (449), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIR+LPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  STELLIRQLPFQRLVREIAQDFKTDLRFQSSA 92

>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k56q Mutation Length = 139

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+STELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQQSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEA EAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3AYW|A Chain A, Crystal Structure Of Human Nucleosome Core Particle Containing H3k56q Mutation Length = 139

Iteration: 1
 Score =  177 bits (449), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 89/92 (96%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQ+
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQQ 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 92

>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 136

Iteration: 1
 Score =  240 bits (613), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 119/123 (96%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATG VKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

>pdb|1F66|A Chain A, 2.6 A Crystal Structure Of A Nucleosome Core Particle Containing The Variant Histone H2a.Z Length = 136

Iteration: 1
 Score =  175 bits (443), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/89 (98%), Positives = 88/89 (98%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATG VKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGEVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89

>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 135

Iteration: 1
 Score =  240 bits (612), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/123 (95%), Positives = 119/123 (96%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1ZLA|A Chain A, X-Ray Structure Of A Kaposi's Sarcoma Herpesvirus Lana Peptide Bound To The Nucleosomal Core Length = 135

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 88/88 (100%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In Complex With Its Chaperone Daxx Length = 136

Iteration: 1
 Score =  239 bits (609), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 116/123 (94%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124
Query: 230 IHW 232
           I  
Sbjct: 125 IQL 127

>pdb|4HGA|B Chain B, Structure Of The Variant Histone H3.3-H4 Heterodimer In Complex With Its Chaperone Daxx Length = 136

Iteration: 1
 Score =  175 bits (444), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 87/89 (97%), Positives = 89/89 (100%)
Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTE 60
Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSAA 89

>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.3 Length = 139

Iteration: 1
 Score =  238 bits (608), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 116/123 (94%), Positives = 120/123 (97%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 68  KLPFQRLVREIAQDFKTDLRFQSAAIGALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3AV2|A Chain A, The Human Nucleosome Structure Containing The Histone Variant H3.3 Length = 139

Iteration: 1
 Score =  176 bits (446), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 88/92 (95%), Positives = 90/92 (97%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 61  STELLIRKLPFQRLVREIAQDFKTDLRFQSAA 92

>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 135

Iteration: 1
 Score =  238 bits (607), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 116/123 (94%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQL TKAA+K APATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1M18|A Chain A, Ligand Binding Alters The Structure And Dynamics Of Nucleosomal Dna Length = 135

Iteration: 1
 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/88 (96%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQL TKAA+K APATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLVTKAAKKCAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  238 bits (606), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/123 (95%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1P3B|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 135

Iteration: 1
 Score =  238 bits (606), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 117/123 (95%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDF TDLRFQSSAVMALQEASEAYLV LFEDTNL AIHAKRVTIMPKD
Sbjct: 64  KLPFQRLVREIAQDFXTDLRFQSSAVMALQEASEAYLVALFEDTNLAAIHAKRVTIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|3C1C|A Chain A, The Effect Of H3 K79 Dimethylation And H4 K20 Trimethylation On Nucleosome And Chromatin Structure Length = 135

Iteration: 1
 Score =  174 bits (440), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 87/88 (98%), Positives = 87/88 (98%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDF TDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFXTDLRFQSSA 88

>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 139

Iteration: 1
 Score =  237 bits (605), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/123 (93%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATK ARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 8   KQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 67
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRL+REIAQDFKTDLRFQSSAVMALQEA E+YLVGLFEDTNLC IHAKRVTIMPKD
Sbjct: 68  KLPFQRLMREIAQDFKTDLRFQSSAVMALQEACESYLVGLFEDTNLCVIHAKRVTIMPKD 127
Query: 230 IHW 232
           I  
Sbjct: 128 IQL 130

>pdb|3A6N|A Chain A, The Nucleosome Containing A Testis-Specific Histone Variant, Human H3t Length = 139

Iteration: 1
 Score =  176 bits (445), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 88/92 (95%), Positives = 89/92 (96%)
Query: 249 NSTMARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQK 308
            S MARTKQTARKSTGGKAPRKQLATK ARKSAPATGGVKKPHRYRPGTVALREIRRYQK
Sbjct: 1   GSHMARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQK 60
Query: 309 STELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           STELLIRKLPFQRL+REIAQDFKTDLRFQSSA
Sbjct: 61  STELLIRKLPFQRLMREIAQDFKTDLRFQSSA 92

>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  236 bits (601), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVAIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1P3K|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVIIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1P3M|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  235 bits (600), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK VTIMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKHVTIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1P3A|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  235 bits (599), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAK VTIMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKAVTIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1P34|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  234 bits (598), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 116/123 (94%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRV IMPKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVHIMPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|1P3L|A Chain A, Crystallographic Studies Of Nucleosome Core Particles Containing Histone 'sin' Mutants Length = 135

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 86/88 (97%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAPATG  KKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPATGESKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length = 135

Iteration: 1
 Score =  233 bits (593), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/123 (91%), Positives = 118/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQS+A+MALQEA+EA+LV LFEDTNLC IHAKRVTI PKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSAAIMALQEAAEAFLVALFEDTNLCTIHAKRVTIFPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|4H9O|A Chain A, Complex Structure 2 Of DaxxH3.3(SUB5,G90M)H4 Length = 135

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSAA 88

>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 135

Iteration: 1
 Score =  229 bits (583), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 111/123 (90%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI PKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVTIFPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|4H9N|A Chain A, Complex Structure 1 Of DaxxH3.3(SUB5)H4 Length = 135

Iteration: 1
 Score =  172 bits (436), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/88 (97%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQS+A
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSAA 88

>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 135

Iteration: 1
 Score =  224 bits (570), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 109/122 (89%), Positives = 116/122 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREI QDFKTDLR+QS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI PKD
Sbjct: 64  KLPFQRLVREICQDFKTDLRWQSAAIGALQEAAEAFLVALFEDTNLCTIHAKRVTIFPKD 123
Query: 230 IH 231
           I 
Sbjct: 124 IQ 125

>pdb|4H9S|A Chain A, Complex Structure 6 Of DaxxH3.3(SUB7)H4 Length = 135

Iteration: 1
 Score =  167 bits (424), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 84/88 (95%), Positives = 87/88 (98%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREI QDFKTDLR+QS+A
Sbjct: 61  LIRKLPFQRLVREICQDFKTDLRWQSAA 88

>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 135

Iteration: 1
 Score =  219 bits (558), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 107/121 (88%), Positives = 115/121 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIRR+QKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSA+ ALQE+ EAYLV LFEDTNL AIHAKRVTI  K+
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSSAIGALQESVEAYLVSLFEDTNLAAIHAKRVTIQKKE 123
Query: 230 I 230
           I
Sbjct: 124 I 124

>pdb|1ID3|A Chain A, Crystal Structure Of The Yeast Nucleosome Core Particle Reveals Fundamental Differences In Inter-Nucleosome Interactions Length = 135

Iteration: 1
 Score =  171 bits (433), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 84/88 (95%), Positives = 88/88 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLA+KAARKSAP+TGGVKKPHRY+PGTVALREIRR+QKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLASKAARKSAPSTGGVKKPHRYKPGTVALREIRRFQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQSSA 88

>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116

Iteration: 1
 Score =  214 bits (546), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 104/107 (97%), Positives = 104/107 (97%)
Query: 126 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 185
           LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK
Sbjct: 1   LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 60
Query: 186 TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
           TDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIMPKDI  
Sbjct: 61  TDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQL 107

>pdb|1AOI|A Chain A, Complex Between Nucleosome Core Particle (H3,H4,H2a,H2b) And 146 Bp Long Dna Fragment Length = 116

Iteration: 1
 Score =  140 bits (354), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 69/69 (100%), Positives = 69/69 (100%)
Query: 272 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 331
           LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK
Sbjct: 1   LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK 60
Query: 332 TDLRFQSSA 340
           TDLRFQSSA
Sbjct: 61  TDLRFQSSA 69

>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length = 135

Iteration: 1
 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 111/123 (90%), Positives = 117/123 (95%)
Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 4   KQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIR 63
Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQS+A+ ALQEA+EA+LV LFEDTNLC IHAKRVTI PKD
Sbjct: 64  KLPFQRLVREIAQDFKTDLRFQSAAIAALQEAAEAFLVALFEDTNLCTIHAKRVTIFPKD 123
Query: 230 IHW 232
           I  
Sbjct: 124 IQL 126

>pdb|4H9P|A Chain A, Complex Structure 3 Of DaxxH3.3(SUB5,G90A)H4 Length = 135

Iteration: 1
 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 85/86 (98%), Positives = 86/86 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTEL 312
           ARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIRRYQKSTEL
Sbjct: 1   ARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTEL 60
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQS 338
           LIRKLPFQRLVREIAQDFKTDLRFQS
Sbjct: 61  LIRKLPFQRLVREIAQDFKTDLRFQS 86

>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 98

Iteration: 1
 Score =  179 bits (454), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 85/89 (95%), Positives = 86/89 (96%)
Query: 144 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 203
           PHRYRPGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE
Sbjct: 1   PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASE 60
Query: 204 AYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
           AYLV LFEDTNLCAIHAKRVTIMPKDI  
Sbjct: 61  AYLVALFEDTNLCAIHAKRVTIMPKDIQL 89

>pdb|3KWQ|A Chain A, Structural Characterization Of H3k56q Nucleosomes And Nucleo Arrays Length = 98

Iteration: 1
 Score =  106 bits (264), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/51 (98%), Positives = 51/51 (100%)
Query: 290 PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           PHRYRPGTVALREIRRYQ+STELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 1   PHRYRPGTVALREIRRYQESTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 51

>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 93

Iteration: 1
 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 82/84 (97%), Positives = 82/84 (97%)
Query: 149 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 208
           PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG
Sbjct: 1   PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVG 60
Query: 209 LFEDTNLCAIHAKRVTIMPKDIHW 232
           LFEDTNLCAIHAKRVTIMPKDI  
Sbjct: 61  LFEDTNLCAIHAKRVTIMPKDIEL 84

>pdb|1HIO|C Chain C, Histone Octamer (Chicken), Chromosomal Protein, Alpha Carbons Only Length = 93

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 46/46 (100%), Positives = 46/46 (100%)
Query: 295 PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 1   PGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 46

>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3 And H4 Length = 77

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 63/66 (95%)
Query: 167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
           LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 3   LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 62
Query: 227 PKDIHW 232
           PKDI  
Sbjct: 63  PKDIQL 68

>pdb|2HUE|B Chain B, Structure Of The H3-h4 Chaperone Asf1 Bound To Histones H3 And H4 Length = 77

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 3   LIRKLPFQRLVREIAQDFKTDLRFQSSA 30

>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76

Iteration: 1
 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 63/66 (95%)
Query: 167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
           LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTIM
Sbjct: 2   LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM 61
Query: 227 PKDIHW 232
           PKDI  
Sbjct: 62  PKDIQL 67

>pdb|4EO5|B Chain B, Yeast Asf1 Bound To H3H4G94P MUTANT Length = 76

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/28 (100%), Positives = 28/28 (100%)
Query: 313 LIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 2   LIRKLPFQRLVREIAQDFKTDLRFQSSA 29

>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3, Cse4 And H4 Length = 100

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 56/89 (62%), Positives = 71/89 (79%), Gaps = 3/89 (3%)
Query: 146 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEAS 202
           RY+P  +AL EIR+YQ+ST+LLI ++PF RLV+E+   F T+   LR+QS A+MALQEAS
Sbjct: 6   RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEAS 65
Query: 203 EAYLVGLFEDTNLCAIHAKRVTIMPKDIH 231
           EAYLVGL E TNL A+HAKR+TIM KD+ 
Sbjct: 66  EAYLVGLLEHTNLLALHAKRITIMRKDMQ 94

>pdb|2YFV|A Chain A, The Heterotrimeric Complex Of Kluyveromyces Lactis Scm3, Cse4 And H4 Length = 100

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/52 (53%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 292 RYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSA 340
           RY+P  +AL EIR+YQ+ST+LLI ++PF RLV+E+   F T+   LR+QS A
Sbjct: 6   RYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMA 57

>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4 Length = 92

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 53/81 (65%), Positives = 66/81 (81%), Gaps = 3/81 (3%)
Query: 153 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMALQEASEAYLVGL 209
           AL EIR+YQ+ST+LLI ++PF RLV+E+   F T+   LR+QS A+MALQEASEAYLVGL
Sbjct: 1   ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGL 60
Query: 210 FEDTNLCAIHAKRVTIMPKDI 230
            E TNL A+HAKR+TIM KD+
Sbjct: 61  LEHTNLLALHAKRITIMRKDM 81

>pdb|2YFW|A Chain A, Heterotetramer Structure Of Kluyveromyces Lactis Cse4,H4 Length = 92

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/45 (55%), Positives = 34/45 (75%), Gaps = 3/45 (6%)
Query: 299 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSA 340
           AL EIR+YQ+ST+LLI ++PF RLV+E+   F T+   LR+QS A
Sbjct: 1   ALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMA 45

>pdb|2L5A|A Chain A, Structural Basis For Recognition Of Centromere Specific Histone H3 Variant By Nonhistone Scm3 Length = 235

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 55/68 (80%), Gaps = 3/68 (4%)
Query: 166 LLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 222
           LLI K+PF RLV+E+  +F T   DLR+QS A+MALQEASEAYLVGL E TNL A+HAKR
Sbjct: 10  LLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKR 69
Query: 223 VTIMPKDI 230
           +TIM KD+
Sbjct: 70  ITIMKKDM 77

>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 143

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 114 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 168
           R+S   +APR++  +        +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 8   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 65
Query: 169 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
           RKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 66  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 125
Query: 227 PKDI 230
           PKD+
Sbjct: 126 PKDV 129

>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing Cenp-A Length = 143

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 260 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 314
           R+S   +APR++  +        +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 8   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 65
Query: 315 RKLPFQRLVREIAQDF--KTDLRFQSSA 340
           RKLPF RL REI   F    D  +Q+ A
Sbjct: 66  RKLPFSRLAREICVKFTRGVDFNWQAQA 93

>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex With Chaperone Hjurp Length = 156

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 114 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 168
           R+S   +APR++  +        +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 21  RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 78
Query: 169 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
           RKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 79  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 138
Query: 227 PKDI 230
           PKD+
Sbjct: 139 PKDV 142

>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex With Chaperone Hjurp Length = 156

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 260 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 314
           R+S   +APR++  +        +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 21  RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 78
Query: 315 RKLPFQRLVREIAQDF--KTDLRFQSSA 340
           RKLPF RL REI   F    D  +Q+ A
Sbjct: 79  RKLPFSRLAREICVKFTRGVDFNWQAQA 106

>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2 HETEROTETRAMER Length = 140

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 58/124 (46%), Positives = 76/124 (61%), Gaps = 9/124 (7%)
Query: 114 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 168
           R+S   +APR++  +        +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 169 RKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
           RKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122
Query: 227 PKDI 230
           PKD+
Sbjct: 123 PKDV 126

>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2 HETEROTETRAMER Length = 140

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 260 RKSTGGKAPRKQLATKAAR----KSAPATGGVKKPH-RYRPGTVALREIRRYQKSTELLI 314
           R+S   +APR++  +        +  P+ G     H R R G   L+EIR+ QKST LLI
Sbjct: 5   RRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLI 62
Query: 315 RKLPFQRLVREIAQDFK--TDLRFQSSA 340
           RKLPF RL REI   F    D  +Q+ A
Sbjct: 63  RKLPFSRLAREICVKFTRGVDFNWQAQA 90

>pdb|3NQJ|A Chain A, Crystal Structure Of (Cenp-AH4)2 HETEROTETRAMER Length = 82

Iteration: 1
 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/67 (58%), Positives = 48/67 (71%), Gaps = 2/67 (2%)
Query: 166 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 223
           LLIRKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RV
Sbjct: 2   LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61
Query: 224 TIMPKDI 230
           T+ PKD+
Sbjct: 62  TLFPKDV 68

>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially Unfolded Dimer Of The Centromere-specific Cse4/h4 Histone Variant Length = 121

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
Query: 56  LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 108
           LI K+PF RLV+E+  +F T   DLR+QS A+MALQEASEAYLVGL E TNL A+H
Sbjct: 1   LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56

>pdb|2LY8|A Chain A, The Budding Yeast Chaperone Scm3 Recognizes The Partially Unfolded Dimer Of The Centromere-specific Cse4/h4 Histone Variant Length = 121

Iteration: 1
 Score = 77.8 bits (190), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 37/56 (66%), Positives = 44/56 (78%), Gaps = 3/56 (5%)
Query: 167 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIH 219
           LI K+PF RLV+E+  +F T   DLR+QS A+MALQEASEAYLVGL E TNL A+H
Sbjct: 1   LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALH 56

>pdb|4FT4|P Chain P, Crystal Structure Of Zea Mays Zmet2 In Complex H3(1-32)k9me2 Peptide And Sah Length = 32

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 31/32 (96%), Positives = 31/32 (96%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 284
           ARTKQTAR STGGKAPRKQLATKAARKSAPAT
Sbjct: 1   ARTKQTARXSTGGKAPRKQLATKAARKSAPAT 32

>pdb|3N9P|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k27me2 Peptide And Nog Length = 32

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 284
           ART QTARKSTGGKAPRKQLATKAAR SAPA+
Sbjct: 1   ARTXQTARKSTGGKAPRKQLATKAARXSAPAS 32

>pdb|3N9N|B Chain B, Cekdm7a From C.Elegans, Complex With H3k4me3k9me2 Peptide And Nog Length = 32

Iteration: 1
 Score = 54.3 bits (129), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 29/32 (90%), Positives = 30/32 (93%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAPAT 284
           ART QTAR STGGKAPRKQLATKAARKSAPA+
Sbjct: 1   ARTXQTARXSTGGKAPRKQLATKAARKSAPAS 32

>pdb|4HSU|C Chain C, Crystal Structure Of Lsd2-npac With H3(1-26)in Space Group P21 Length = 30

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/30 (96%), Positives = 29/30 (96%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKSAP 282
           ART QTARKSTGGKAPRKQLATKAARKSAP
Sbjct: 1   ARTMQTARKSTGGKAPRKQLATKAARKSAP 30

>pdb|4GU0|E Chain E, Crystal Structure Of Lsd2 With H3 Length = 26

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/26 (96%), Positives = 25/26 (96%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAAR 278
           ART QTARKSTGGKAPRKQLATKAAR
Sbjct: 1   ARTMQTARKSTGGKAPRKQLATKAAR 26

>pdb|3U5P|I Chain I, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And H3(1-28) K9me3k14ack18ack23ac Histone Peptide Length = 28

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 24/28 (85%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKAARKS 280
           ARTKQTAR STGG APR QLAT AARKS
Sbjct: 1   ARTKQTARXSTGGXAPRXQLATXAARKS 28

>pdb|2P5B|I Chain I, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 22

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 21 RKSAPATGGVKKPHRYRPGTV 41
          RKSAPATGGV KPHRYRPGTV
Sbjct: 1  RKSAPATGGVXKPHRYRPGTV 21

>pdb|2P5B|I Chain I, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 22

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 132 RKSAPATGGVKKPHRYRPGTV 152
           RKSAPATGGV KPHRYRPGTV
Sbjct: 1   RKSAPATGGVXKPHRYRPGTV 21

>pdb|2P5B|I Chain I, The Complex Structure Of Jmjd2a And Trimethylated H3k36 Peptide Length = 22

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 278 RKSAPATGGVKKPHRYRPGTV 298
           RKSAPATGGV KPHRYRPGTV
Sbjct: 1   RKSAPATGGVXKPHRYRPGTV 21

>pdb|2X4W|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The Pwwp Domain Of Brpf1. Length = 21

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 17 TKAARKSAPATGGVKKPHRYR 37
          TKAARKSAPATGGV KPHRYR
Sbjct: 1  TKAARKSAPATGGVXKPHRYR 21

>pdb|2X4W|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The Pwwp Domain Of Brpf1. Length = 21

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 128 TKAARKSAPATGGVKKPHRYR 148
           TKAARKSAPATGGV KPHRYR
Sbjct: 1   TKAARKSAPATGGVXKPHRYR 21

>pdb|2X4W|B Chain B, Molecular Basis Of Histone H3k36me3 Recognition By The Pwwp Domain Of Brpf1. Length = 21

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/21 (95%), Positives = 20/21 (95%)
Query: 274 TKAARKSAPATGGVKKPHRYR 294
           TKAARKSAPATGGV KPHRYR
Sbjct: 1   TKAARKSAPATGGVXKPHRYR 21

>pdb|3KV4|B Chain B, Structure Of Phf8 In Complex With Histone H3 Length = 24

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/24 (91%), Positives = 22/24 (91%)
Query: 253 ARTKQTARKSTGGKAPRKQLATKA 276
           ART QTAR STGGKAPRKQLATKA
Sbjct: 1   ARTXQTARXSTGGKAPRKQLATKA 24

>pdb|3A1B|A Chain A, Crystal Structure Of The Dnmt3a Add Domain In Complex With Histone H3 Length = 159

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/20 (100%), Positives = 20/20 (100%)
Query: 253 ARTKQTARKSTGGKAPRKQL 272
           ARTKQTARKSTGGKAPRKQL
Sbjct: 1   ARTKQTARKSTGGKAPRKQL 20

>pdb|3AVR|B Chain B, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3 PEPTIDE, N-Oxyalylglycine, And Ni(Ii) Length = 22

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 12 RKQLATKAARKSAPATGGVKKP 33
          RKQLATKAAR SAPATGGVKKP
Sbjct: 1  RKQLATKAARXSAPATGGVKKP 22

>pdb|3AVR|B Chain B, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3 PEPTIDE, N-Oxyalylglycine, And Ni(Ii) Length = 22

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 123 RKQLATKAARKSAPATGGVKKP 144
           RKQLATKAAR SAPATGGVKKP
Sbjct: 1   RKQLATKAARXSAPATGGVKKP 22

>pdb|3AVR|B Chain B, Catalytic Fragment Of UtxKDM6A BOUND WITH HISTONE H3K27ME3 PEPTIDE, N-Oxyalylglycine, And Ni(Ii) Length = 22

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/22 (95%), Positives = 21/22 (95%)
Query: 269 RKQLATKAARKSAPATGGVKKP 290
           RKQLATKAAR SAPATGGVKKP
Sbjct: 1   RKQLATKAARXSAPATGGVKKP 22

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	340
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	2e-34
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	3e-28
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	8e-22
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	5e-32
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	2e-26
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	4e-15
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	2e-30
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	4e-24
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	3e-10
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	9e-30
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	1e-24
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	6e-16
3r45_A	156	Histone H3-like centromeric protein A; histone fol	4e-26
3r45_A	156	Histone H3-like centromeric protein A; histone fol	6e-21
3r45_A	156	Histone H3-like centromeric protein A; histone fol	9e-16
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	5e-25
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	5e-24
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	8e-25
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	1e-18
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2x4w_B	26	Histone H3.2; transcription, metal-binding, zinc-f	2e-05
2x4w_B	26	Histone H3.2; transcription, metal-binding, zinc-f	2e-05
2x4w_B	26	Histone H3.2; transcription, metal-binding, zinc-f	2e-05
3avr_B	26	Histone H3; cupin superfamily, TRI/dimethyllysine	5e-04
3avr_B	26	Histone H3; cupin superfamily, TRI/dimethyllysine	5e-04
3avr_B	26	Histone H3; cupin superfamily, TRI/dimethyllysine	5e-04

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Length = 136

 Score =  122 bits (305), Expect = 2e-34
 Identities = 120/122 (98%), Positives = 121/122 (99%)

Query: 110 KRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 169
           K+TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR
Sbjct: 5   KQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIR 64

Query: 170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 229
           KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD
Sbjct: 65  KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKD 124

Query: 230 IH 231
           I 
Sbjct: 125 IQ 126

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Length = 136

 Score =  106 bits (264), Expect = 3e-28
 Identities = 111/111 (100%), Positives = 111/111 (100%)

Query: 1   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 60
           TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL
Sbjct: 7   TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKL 66

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
           PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR
Sbjct: 67  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 117

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ... Length = 136

 Score = 89.0 bits (219), Expect = 8e-22
 Identities = 89/89 (100%), Positives = 89/89 (100%)

Query: 252 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 311
           MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE
Sbjct: 1   MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTE 60

Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 61  LLIRKLPFQRLVREIAQDFKTDLRFQSSA 89

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Length = 100

 Score =  114 bits (286), Expect = 5e-32
 Identities = 56/93 (60%), Positives = 72/93 (77%), Gaps = 3/93 (3%)

Query: 142 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMAL 198
            +  RY+P  +AL EIR+YQ+ST+LLI ++PF RLV+E+   F T+   LR+QS A+MAL
Sbjct: 2   ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMAL 61

Query: 199 QEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIH 231
           QEASEAYLVGL E TNL A+HAKR+TIM KD+ 
Sbjct: 62  QEASEAYLVGLLEHTNLLALHAKRITIMRKDMQ 94

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Length = 100

 Score = 99.9 bits (248), Expect = 2e-26
 Identities = 51/84 (60%), Positives = 65/84 (77%), Gaps = 3/84 (3%)

Query: 31  KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD---LRFQSSAVMAL 87
            +  RY+P  +AL EIR+YQ+ST+LLI ++PF RLV+E+   F T+   LR+QS A+MAL
Sbjct: 2   ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMAL 61

Query: 88  QEASEAYLVGLFEDTNLCAIHAKR 111
           QEASEAYLVGL E TNL A+HAKR
Sbjct: 62  QEASEAYLVGLLEHTNLLALHAKR 85

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A Length = 100

 Score = 69.4 bits (169), Expect = 4e-15
 Identities = 23/46 (50%), Positives = 34/46 (73%)

Query: 288 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD 333
            +  RY+P  +AL EIR+YQ+ST+LLI ++PF RLV+E+   F T+
Sbjct: 2   ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTE 47

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Length = 77

 Score =  109 bits (274), Expect = 2e-30
 Identities = 63/66 (95%), Positives = 63/66 (95%)

Query: 166 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTI 225
            LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKRVTI
Sbjct: 2   ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTI 61

Query: 226 MPKDIH 231
           MPKDI 
Sbjct: 62  MPKDIQ 67

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Length = 77

 Score = 93.0 bits (231), Expect = 4e-24
 Identities = 55/57 (96%), Positives = 55/57 (96%)

Query: 55  LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
            LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLV LFEDTNLCAIHAKR
Sbjct: 2   ALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKR 58

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} Length = 77

 Score = 54.9 bits (132), Expect = 3e-10
 Identities = 28/29 (96%), Positives = 28/29 (96%)

Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
            LIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 2   ALIRKLPFQRLVREIAQDFKTDLRFQSSA 30

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Length = 140

 Score =  109 bits (274), Expect = 9e-30
 Identities = 57/125 (45%), Positives = 74/125 (59%), Gaps = 7/125 (5%)

Query: 113 ARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 168
            R+S   +APR++      T    +  P+ G     H  R     L+EIR+ QKST LLI
Sbjct: 4   RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQH-SRRRQGWLKEIRKLQKSTHLLI 62

Query: 169 RKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM 226
           RKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RVT+ 
Sbjct: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF 122

Query: 227 PKDIH 231
           PKD+ 
Sbjct: 123 PKDVQ 127

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Length = 140

 Score = 96.9 bits (240), Expect = 1e-24
 Identities = 52/116 (44%), Positives = 67/116 (57%), Gaps = 7/116 (6%)

Query: 2   ARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 57
            R+S   +APR++      T    +  P+ G     H  R     L+EIR+ QKST LLI
Sbjct: 4   RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQH-SRRRQGWLKEIRKLQKSTHLLI 62

Query: 58  RKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
           RKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA R
Sbjct: 63  RKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGR 118

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A Length = 140

 Score = 73.0 bits (178), Expect = 6e-16
 Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 5/86 (5%)

Query: 259 ARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLI 314
            R+S   +APR++      T    +  P+ G     H  R     L+EIR+ QKST LLI
Sbjct: 4   RRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQH-SRRRQGWLKEIRKLQKSTHLLI 62

Query: 315 RKLPFQRLVREIAQDFKTDLRFQSSA 340
           RKLPF RL REI   F   + F   A
Sbjct: 63  RKLPFSRLAREICVKFTRGVDFNWQA 88

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Length = 156

 Score =  101 bits (251), Expect = 4e-26
 Identities = 57/130 (43%), Positives = 76/130 (58%), Gaps = 7/130 (5%)

Query: 108 HAKRTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKS 163
           ++    R+S   +APR++      T    +  P+ G     H  R     L+EIR+ QKS
Sbjct: 15  NSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHS-RRRQGWLKEIRKLQKS 73

Query: 164 TELLIRKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK 221
           T LLIRKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA 
Sbjct: 74  THLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAG 133

Query: 222 RVTIMPKDIH 231
           RVT+ PKD+ 
Sbjct: 134 RVTLFPKDVQ 143

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Length = 156

 Score = 87.0 bits (214), Expect = 6e-21
 Identities = 52/117 (44%), Positives = 67/117 (57%), Gaps = 7/117 (5%)

Query: 1   TARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELL 56
             R+S   +APR++      T    +  P+ G     H  R     L+EIR+ QKST LL
Sbjct: 19  PRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHS-RRRQGWLKEIRKLQKSTHLL 77

Query: 57  IRKLPFQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
           IRKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA R
Sbjct: 78  IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGR 134

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens} Length = 156

 Score = 72.7 bits (177), Expect = 9e-16
 Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 5/97 (5%)

Query: 248 HNSTMARTKQTARKSTGGKAPRKQ----LATKAARKSAPATGGVKKPHRYRPGTVALREI 303
           H+S    +    R+S   +APR++      T    +  P+ G     H  R     L+EI
Sbjct: 9   HHSQDPNSMGPRRRSRKPEAPRRRSPSPTPTPGPSRRGPSLGASSHQHS-RRRQGWLKEI 67

Query: 304 RRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           R+ QKST LLIRKLPF RL REI   F   + F   A
Sbjct: 68  RKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQA 104

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235

 Score =  100 bits (249), Expect = 5e-25
 Identities = 55/187 (29%), Positives = 81/187 (43%), Gaps = 7/187 (3%)

Query: 157 IRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDT 213
           +  +    +LLI K+PF RLV+E+  +F T   DLR+QS A+MALQEASEAYLVGL E T
Sbjct: 1   MHHHHHHKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHT 60

Query: 214 NLCAIHAKRVTIMPKDIHWPSQWCDNLTECSTWQHNSTMARTKQTARKSTGGKAPRKQLA 273
           NL A+HAKR+TIM KD+    +                     +  RK       + +  
Sbjct: 61  NLLALHAKRITIMKKDMQLARRIRGQF--LVPRGSMERHKLADENMRKVWSNIISKYESI 118

Query: 274 TKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD 333
            +        TG + + + +     A    +  +     ++R      +  E   D    
Sbjct: 119 EEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRD--IIDISDEEDGDKGGV 176

Query: 334 LRFQSSA 340
            R     
Sbjct: 177 KRISGLI 183

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae} Length = 235

 Score = 97.8 bits (242), Expect = 5e-24
 Identities = 58/221 (26%), Positives = 89/221 (40%), Gaps = 38/221 (17%)

Query: 46  IRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDT 102
           +  +    +LLI K+PF RLV+E+  +F T   DLR+QS A+MALQEASEAYLVGL E T
Sbjct: 1   MHHHHHHKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHT 60

Query: 103 NLCAIHAKRT---------------------------------ARKSTGGKAPRKQLATK 129
           NL A+HAKR                                   RK       + +   +
Sbjct: 61  NLLALHAKRITIMKKDMQLARRIRGQFLVPRGSMERHKLADENMRKVWSNIISKYESIEE 120

Query: 130 AARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLR 189
                   TG + + + +     A    +  +     ++R      +  E   D     R
Sbjct: 121 QGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRD--IIDISDEEDGDKGGVKR 178

Query: 190 FQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
                   ++   +++L  +  D+     HAKR T+   D+
Sbjct: 179 ISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDV 219

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Length = 82

 Score = 95.1 bits (236), Expect = 8e-25
 Identities = 39/68 (57%), Positives = 48/68 (70%), Gaps = 2/68 (2%)

Query: 166 LLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRV 223
           LLIRKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA RV
Sbjct: 2   LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRV 61

Query: 224 TIMPKDIH 231
           T+ PKD+ 
Sbjct: 62  TLFPKDVQ 69

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Length = 82

 Score = 78.5 bits (193), Expect = 1e-18
 Identities = 34/59 (57%), Positives = 41/59 (69%), Gaps = 2/59 (3%)

Query: 55  LLIRKLPFQRLVREIAQDFKT--DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKR 111
           LLIRKLPF RL REI   F    D  +Q+ A++ALQEA+EA+LV LFED  L  +HA R
Sbjct: 2   LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGR 60

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens} Length = 82

 Score = 46.9 bits (111), Expect = 2e-07
 Identities = 16/29 (55%), Positives = 17/29 (58%)

Query: 312 LLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           LLIRKLPF RL REI   F   + F   A
Sbjct: 2   LLIRKLPFSRLAREICVKFTRGVDFNWQA 30

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 2e-06
 Identities = 55/384 (14%), Positives = 100/384 (26%), Gaps = 104/384 (27%)

Query: 13  KQ-LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQ 71
           K  +A               K        +    ++    S E ++  L  Q+L+ +I  
Sbjct: 163 KTWVALDVCLS--------YKVQCKMDFKIFWLNLKNCN-SPETVLEML--QKLLYQIDP 211

Query: 72  DFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-------IHAKRTARKSTGGKAPRK 124
           ++ T     SS +     + +A L  L +             +   +            K
Sbjct: 212 NW-TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC---K 267

Query: 125 QLATKAARKSAPATGGVKKPHRYRPGTVALREIRR---YQKSTELLIRKL--PFQRLVRE 179
            L T   ++           H      ++L          +   LL++ L    Q L RE
Sbjct: 268 ILLTTRFKQVTDFLSAATTTH------ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321

Query: 180 -----------IAQDFKTDL----RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVT 224
                      IA+  +  L     ++      L    E+ L  L  +         R++
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEYRKMFDRLS 379

Query: 225 IMPKDIHWPSQ-----WCDNLTECSTWQHNSTMARTKQTARKSTGGKAPRK--------Q 271
           + P   H P+      W D +           M    +  + S   K P++         
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSD-------VMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 272 LATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLP--------FQRLV 323
           L  K   ++  A       HR          +  Y          L         +  + 
Sbjct: 433 LELKVKLENEYAL------HR--------SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478

Query: 324 R-----EIAQDFK------TDLRF 336
                 E  +          D RF
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRF 502

>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B* Length = 26

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)

Query: 17 TKAARKSAPATGGVKKPHRYR 37
          TKAARKSAPATGGV KPHRYR
Sbjct: 1  TKAARKSAPATGGVXKPHRYR 21

>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B* Length = 26

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)

Query: 128 TKAARKSAPATGGVKKPHRYR 148
           TKAARKSAPATGGV KPHRYR
Sbjct: 1   TKAARKSAPATGGVXKPHRYR 21

>2x4w_B Histone H3.2; transcription, metal-binding, zinc-finger, chromatin regulator, transcription regulation; HET: M3L; 1.50A {Homo sapiens} PDB: 2x4x_B* 2x4y_B* Length = 26

 Score = 39.9 bits (92), Expect = 2e-05
 Identities = 20/21 (95%), Positives = 20/21 (95%)

Query: 274 TKAARKSAPATGGVKKPHRYR 294
           TKAARKSAPATGGV KPHRYR
Sbjct: 1   TKAARKSAPATGGVXKPHRYR 21

>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} Length = 26

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 21/22 (95%), Positives = 21/22 (95%)

Query: 12 RKQLATKAARKSAPATGGVKKP 33
          RKQLATKAAR SAPATGGVKKP
Sbjct: 1  RKQLATKAARXSAPATGGVKKP 22

>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} Length = 26

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 21/22 (95%), Positives = 21/22 (95%)

Query: 123 RKQLATKAARKSAPATGGVKKP 144
           RKQLATKAAR SAPATGGVKKP
Sbjct: 1   RKQLATKAARXSAPATGGVKKP 22

>3avr_B Histone H3; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} Length = 26

 Score = 36.0 bits (82), Expect = 5e-04
 Identities = 21/22 (95%), Positives = 21/22 (95%)

Query: 269 RKQLATKAARKSAPATGGVKKP 290
           RKQLATKAAR SAPATGGVKKP
Sbjct: 1   RKQLATKAARXSAPATGGVKKP 22

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	340
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	100.0
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	100.0
3r45_A	156	Histone H3-like centromeric protein A; histone fol	100.0
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	100.0
1tzy_C	136	Histone H3; histone-fold, tetramer-dimer-dimer, DN	100.0
2yfv_A	100	Histone H3-like centromeric protein CSE4; cell cyc	100.0
3r45_A	156	Histone H3-like centromeric protein A; histone fol	100.0
3nqu_A	140	Histone H3-like centromeric protein A; alpha helix	100.0
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	100.0
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	99.97
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	99.97
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	99.95
2l5a_A	235	Histone H3-like centromeric protein CSE4, protein	99.95
2hue_B	77	Histone H3; mini beta sheet, elongated beta sandwh	99.92
3nqj_A	82	Histone H3-like centromeric protein A; alpha helix	99.92
2ly8_A	121	Budding yeast chaperone SCM3; centromere protein,	99.89
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	99.7
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	99.48
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	99.34
1b67_A	68	Protein (histone HMFA); DNA binding protein; 1.48A	99.33
2r10_A	361	Chromatin structure-remodeling complex protein RSC	99.12
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	98.99
1ku5_A	70	HPHA, archaeal histon; histone fold, DNA binding p	98.92
1n1j_A	93	NF-YB; histone-like PAIR, DNA binding protein; 1.6	98.76
2x4w_B	26	Histone H3.2; transcription, metal-binding, zinc-f	98.53
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	98.01
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	98.0
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	97.96
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	97.96
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	97.86
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	97.75
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	97.63
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	97.61
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	97.58
1f1e_A	154	Histone fold protein; archaeal histone protein, DN	97.53
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	97.51
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	97.45
1taf_A	68	TFIID TBP associated factor 42; transcription init	97.43
2r10_A	361	Chromatin structure-remodeling complex protein RSC	97.36
3avr_B	26	Histone H3; cupin superfamily, TRI/dimethyllysine	97.35
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	97.34
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	97.29
1taf_B	70	TFIID TBP associated factor 62; transcription init	97.2
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	97.17
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	96.7
1h3o_B	76	Transcription initiation factor TFIID 20/15 kDa su	96.45
2x4w_B	26	Histone H3.2; transcription, metal-binding, zinc-f	96.42
1jfi_A	98	Transcription regulator NC2 alpha chain; histone,	96.34
2byk_A	140	Chrac-16; nucleosome sliding, histone fold, DNA-bi	96.06
2k3y_A	136	Chromatin modification-related protein EAF3; dimet	95.97
1id3_B	102	Histone H4; nucleosome core particle, chromatin, p	95.61
2hue_C	84	Histone H4; mini beta sheet, elongated beta sandwh	95.27
3b0c_T	111	CENP-T, centromere protein T; histone fold, DNA bi	95.08
1tzy_D	103	Histone H4-VI; histone-fold, tetramer-dimer-dimer,	95.03
2nqb_D	123	Histone H2B; nucleosome, NCP, chromatin, structura	94.88
2yfw_B	103	Histone H4, H4; cell cycle, kinetochore, centromer	94.84
1tzy_B	126	Histone H2B; histone-fold, tetramer-dimer-dimer, D	94.79
3a1b_A	159	DNA (cytosine-5)-methyltransferase 3A, histone H3;	94.74
2nqb_C	123	Histone H2A; nucleosome, NCP, chromatin, structura	94.42
1tzy_A	129	Histone H2A-IV; histone-fold, tetramer-dimer-dimer	94.19
2f8n_G	120	Core histone macro-H2A.1; nucleosome, NCP, macroh2	94.18
2byk_B	128	Chrac-14; nucleosome sliding, histone fold, DNA-bi	94.09
3b0c_W	76	CENP-W, centromere protein W; histone fold, DNA bi	94.03
1jfi_B	179	DR1 protein, transcription regulator NC2 beta chai	93.87
2f8n_K	149	Histone H2A type 1; nucleosome, NCP, macroh2A, his	93.76
1id3_C	131	Histone H2A.1; nucleosome core particle, chromatin	93.64
1f66_C	128	Histone H2A.Z; nucleosome, chromatin, histone vari	93.19
2jss_A	192	Chimera of histone H2B.1 and histone H2A.Z; histon	91.65
1taf_A	68	TFIID TBP associated factor 42; transcription init	91.58
3v9r_A	90	MHF1, uncharacterized protein YOL086W-A; histone f	91.08
4dra_A	113	Centromere protein S; DNA binding complex, DNA dam	90.86
3b0b_B	107	CENP-S, centromere protein S; histone fold, DNA bi	89.62
3vh5_A	140	CENP-S; histone fold, chromosome segregation, DNA	87.86
1taf_B	70	TFIID TBP associated factor 62; transcription init	87.65
4g92_C	119	HAPE; transcription factor, nucleosome, minor groo	86.63
1n1j_B	97	NF-YC; histone-like PAIR, DNA binding protein; 1.6	84.76

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=100.00  E-value=1.9e-50  Score=348.75  Aligned_cols=132  Identities=91%  Similarity=1.245  Sum_probs=91.8

Q ss_pred             cccccccccCCCCCCcchhhhhhhcCCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcccc
Q psy2783         108 HAKRTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD  187 (340)
Q Consensus       108 HakRvtrKs~~~kAPRKqlAsk~~~ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~  187 (340)
                      +.|..+++++|+++|+++++.+.++++.|.+++.++++||+||+++|+|||+||+||+|||||+||+||||||+++|.++
T Consensus         3 Rtk~tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~   82 (136)
T 1tzy_C            3 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD   82 (136)
T ss_dssp             ---------------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTT
T ss_pred             CCccccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhh
Confidence            57888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         188 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       188 ~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      +|||++||+|||||+|+|||+||||+|+||+||+|||||++||||+.+|+++
T Consensus        83 ~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg~  134 (136)
T 1tzy_C           83 LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGE  134 (136)
T ss_dssp             CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTC
T ss_pred             hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhCc
Confidence            9999999999999999999999999999999999999999999999999875

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=100.00  E-value=1.7e-45  Score=303.43  Aligned_cols=96  Identities=58%  Similarity=0.910  Sum_probs=66.6

Q ss_pred             CCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccc---cccccHHHHHHHHHHHHHHHHHhhhchhhhhc
Q psy2783         142 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI  218 (340)
Q Consensus       142 ~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~---~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~  218 (340)
                      ++++||+||++||+|||+||+||+|||||+||+||||||++++.+   ++|||++||+|||||+|+|||+||||+|+||+
T Consensus         2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~   81 (100)
T 2yfv_A            2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL   81 (100)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999976   89999999999999999999999999999999


Q ss_pred             cCCceecCCCCcchhhhhh
Q psy2783         219 HAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       219 HakRVTl~~kDm~L~~~i~  237 (340)
                      ||||||||++||||+.+|.
T Consensus        82 HAkRvTi~~kDiqLa~rir  100 (100)
T 2yfv_A           82 HAKRITIMRKDMQLARRIR  100 (100)
T ss_dssp             HTTCSEECHHHHHHHHHCC
T ss_pred             HcCCccCCHHHHHHHHHhC
Confidence            9999999999999999873

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=100.00  E-value=3.1e-44  Score=315.01  Aligned_cols=111  Identities=48%  Similarity=0.735  Sum_probs=73.1

Q ss_pred             hhhhhcCCCCCCCCCCCC-CcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcc--ccccccHHHHHHHHHHHH
Q psy2783         127 ATKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASE  203 (340)
Q Consensus       127 Ask~~~ks~~~~~~~~~~-~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~--~~~rfq~~Al~ALQeAaE  203 (340)
                      +.+++++++|.+|+++++ +||+||+  |+|||+||+||+|||||+||+||||||+++|+  .++|||++||+|||||+|
T Consensus        38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE  115 (156)
T 3r45_A           38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE  115 (156)
T ss_dssp             ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence            566788899999888766 7899998  99999999999999999999999999999997  589999999999999999


Q ss_pred             HHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         204 AYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       204 a~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      +|||+||||+|+||+||||||||++||||+.+|.+.
T Consensus       116 ayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIrg~  151 (156)
T 3r45_A          116 AFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL  151 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHccc
Confidence            999999999999999999999999999999999875

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=100.00  E-value=8.6e-44  Score=308.12  Aligned_cols=109  Identities=48%  Similarity=0.739  Sum_probs=72.4

Q ss_pred             hhhcCCCCCCCCCCCC-CcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhcc--ccccccHHHHHHHHHHHHHH
Q psy2783         129 KAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAY  205 (340)
Q Consensus       129 k~~~ks~~~~~~~~~~-~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~--~~~rfq~~Al~ALQeAaEa~  205 (340)
                      +++++++|.+|+++++ +||+||+  |+|||+||+||+|||||+||+||||||+++|+  .++|||++||+|||||+|+|
T Consensus        24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay  101 (140)
T 3nqu_A           24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF  101 (140)
T ss_dssp             -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence            5678888888877665 4899998  99999999999999999999999999999997  58999999999999999999


Q ss_pred             HHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         206 LVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       206 Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      ||+||||+|+||+||||||||++||||+.+|.+.
T Consensus       102 Lv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~  135 (140)
T 3nqu_A          102 LVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL  135 (140)
T ss_dssp             HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence            9999999999999999999999999999999875

>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...

Probab=100.00  E-value=5e-44  Score=308.68  Aligned_cols=115  Identities=97%  Similarity=1.308  Sum_probs=79.2

Q ss_pred             CCCCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccc
Q psy2783           1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ   80 (340)
Q Consensus         1 ta~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q   80 (340)
                      ||+|++||++|+|++++++++++.|.+++.++++||+||+++|+|||+||+||+||||++||+||||||+++|..++|||
T Consensus         7 tarkstggkaprk~l~~k~a~k~~p~~~~~kk~~r~rpgt~alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~~R~q   86 (136)
T 1tzy_C            7 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQ   86 (136)
T ss_dssp             -----------------------------------CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEEC
T ss_pred             ccccCCCCCCCCccccccccccCCCCCCCCCCCCCCCCchhHHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhhhccc
Confidence            58899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          81 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        81 ~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ++||+|||||+|+|||+||||+|+||+|+||||.+
T Consensus        87 ~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~  121 (136)
T 1tzy_C           87 SSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM  121 (136)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence            99999999999999999999999999999999985

>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A

Probab=100.00  E-value=5.3e-38  Score=258.76  Aligned_cols=85  Identities=60%  Similarity=0.929  Sum_probs=56.0

Q ss_pred             CCCcccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhccc---ccccchHHHHHHHHHHHHHhhhhccccccccc
Q psy2783          31 KKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAI  107 (340)
Q Consensus        31 ~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~---~~r~q~~Al~ALQeAaEayLv~LFEds~lcai  107 (340)
                      ++++||+||+++|+|||+||+||+|||||+||+||||||++++.+   ++|||++|++|||||+|+|||+||||+|+||+
T Consensus         2 ~~~~r~rpgt~alrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~   81 (100)
T 2yfv_A            2 ARGTRYKPTDLALAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLAL   81 (100)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCcchHHHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467899999999999999999999999999999999999999986   89999999999999999999999999999999


Q ss_pred             cccccccc
Q psy2783         108 HAKRTARK  115 (340)
Q Consensus       108 HakRvtrK  115 (340)
                      ||||||.+
T Consensus        82 HAkRvTi~   89 (100)
T 2yfv_A           82 HAKRITIM   89 (100)
T ss_dssp             HTTCSEEC
T ss_pred             HcCCccCC
Confidence            99999985

>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}

Probab=100.00  E-value=8.6e-37  Score=267.91  Aligned_cols=98  Identities=49%  Similarity=0.733  Sum_probs=60.4

Q ss_pred             hhhhcccCCCCCCCCCCC-cccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcc--cccccchHHHHHHHHHHH
Q psy2783          16 ATKAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASE   92 (340)
Q Consensus        16 a~k~a~ks~p~~~~~~~~-~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~--~~~r~q~~Al~ALQeAaE   92 (340)
                      +++++++++|.+|+.+++ +||+||+  |+|||+||+||+|||||+||+||||||+++|.  .++|||.+||+|||||+|
T Consensus        38 ~~~aa~ksap~~g~~~~~~~r~rpg~--LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaE  115 (156)
T 3r45_A           38 PTPGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAE  115 (156)
T ss_dssp             ---------------------------------------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCch--HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHH
Confidence            466788888999887665 7899998  99999999999999999999999999999997  589999999999999999


Q ss_pred             HHhhhhccccccccccccccccc
Q psy2783          93 AYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        93 ayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +|||+||||+|+||+||||||.+
T Consensus       116 ayLV~LFEdanLcAiHAkRVTIm  138 (156)
T 3r45_A          116 AFLVHLFEDAYLLTLHAGRVTLF  138 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSEEC
T ss_pred             HHHHHHHHHHHHHHHHcCccccc
Confidence            99999999999999999999986

>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A

Probab=100.00  E-value=1.5e-36  Score=262.95  Aligned_cols=96  Identities=49%  Similarity=0.739  Sum_probs=60.4

Q ss_pred             hhcccCCCCCCCCCCC-cccCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcc--cccccchHHHHHHHHHHHHH
Q psy2783          18 KAARKSAPATGGVKKP-HRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAY   94 (340)
Q Consensus        18 k~a~ks~p~~~~~~~~-~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~--~~~r~q~~Al~ALQeAaEay   94 (340)
                      +++++++|.+|+.+++ +||+||+  |+|||+||+||+|||||+||+||||||+++|.  .++|||++||+|||||+|+|
T Consensus        24 ~aa~~~~~~~g~~~~~~~r~rpg~--LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEay  101 (140)
T 3nqu_A           24 PGPSRRGPSLGASSHQHSRRRQGW--LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAF  101 (140)
T ss_dssp             -------------------------------------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCcc--HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHH
Confidence            5677888888877655 5899998  99999999999999999999999999999997  58999999999999999999


Q ss_pred             hhhhccccccccccccccccc
Q psy2783          95 LVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        95 Lv~LFEds~lcaiHakRvtrK  115 (340)
                      ||+||||+|+||+||||||.+
T Consensus       102 Lv~LFEdanlcAiHAkRVTIm  122 (140)
T 3nqu_A          102 LVHLFEDAYLLTLHAGRVTLF  122 (140)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEC
T ss_pred             HHHHHHHHHHHHHHcCccccc
Confidence            999999999999999999986

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=100.00  E-value=3.4e-34  Score=226.14  Aligned_cols=75  Identities=84%  Similarity=1.128  Sum_probs=72.5

Q ss_pred             hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      +|||||+||+||||||+++|++++|||++|++|||||+|+|||+||||+|+||+||||||||++||||+.+|+++
T Consensus         1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg~   75 (77)
T 2hue_B            1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRGE   75 (77)
T ss_dssp             -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTC
T ss_pred             CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhCc
Confidence            589999999999999999999999999999999999999999999999999999999999999999999999875

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=99.97  E-value=8.8e-34  Score=226.20  Aligned_cols=74  Identities=53%  Similarity=0.819  Sum_probs=71.2

Q ss_pred             hhccCCchhHHHHHHHHhcc--ccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         166 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       166 lLIpk~pF~RLVrEI~~~~~--~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      |||||+||+||||||+++++  .++|||++|++|||||+|+|||+||||+|+||+||||||||++||||+.+|+++
T Consensus         2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg~   77 (82)
T 3nqj_A            2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL   77 (82)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC-
T ss_pred             CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHccc
Confidence            79999999999999999997  689999999999999999999999999999999999999999999999999876

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-31  Score=248.02  Aligned_cols=78  Identities=59%  Similarity=0.892  Sum_probs=71.8

Q ss_pred             hhhhhccCCchhHHHHHHHHhccc---cccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         163 STELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       163 st~lLIpk~pF~RLVrEI~~~~~~---~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      ...|||||+||+||||||+++|.+   ++|||++||+|||||+|+|||+||||+|+||+||||||||||||||+.+|+++
T Consensus         7 ~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~   86 (235)
T 2l5a_A            7 HKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ   86 (235)
T ss_dssp             ----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred             cccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence            456899999999999999999976   89999999999999999999999999999999999999999999999999875


Q ss_pred             c
Q psy2783         240 L  240 (340)
Q Consensus       240 ~  240 (340)
                      .
T Consensus        87 ~   87 (235)
T 2l5a_A           87 F   87 (235)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=99.95  E-value=6.1e-29  Score=210.88  Aligned_cols=110  Identities=43%  Similarity=0.625  Sum_probs=96.0

Q ss_pred             hhccCchhHHHHHHHhhccc---ccccchHHHHHHHHHHHHHhhhhccccccccccccccccccCCCCCCcchhhhhhhc
Q psy2783          56 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAAR  132 (340)
Q Consensus        56 LIpk~pF~RLVREI~~~~~~---~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~~~kAPRKqlAsk~~~  132 (340)
                      ||||+||+||||||++++.+   ++|||++||.|||||+|+|||+||||+||||+||.|                     
T Consensus         1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~---------------------   59 (121)
T 2ly8_A            1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVP---------------------   59 (121)
T ss_dssp             CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCC---------------------
T ss_pred             CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCc---------------------
Confidence            79999999999999999987   899999999999999999999999999999999911                     


Q ss_pred             CCCCCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhc
Q psy2783         133 KSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFED  212 (340)
Q Consensus       133 ks~~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFed  212 (340)
                            +|+                                              -|+..++-+.+-++.|.||-.+-.|
T Consensus        60 ------gGv----------------------------------------------kRIS~~iy~e~r~vl~~~l~~i~rd   87 (121)
T 2ly8_A           60 ------RGS----------------------------------------------KRISGLIYEEVRAVLKSFLESVIRD   87 (121)
T ss_dssp             ------CCS----------------------------------------------SCCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cCc----------------------------------------------cchhHHHHHHHHHHHHHHHHHHHHH
Confidence                  111                                              1334455667778899999999999


Q ss_pred             hhhhhccCCceecCCCCcchhhhhhc
Q psy2783         213 TNLCAIHAKRVTIMPKDIHWPSQWCD  238 (340)
Q Consensus       213 a~lca~HakRVTl~~kDm~L~~~i~~  238 (340)
                      +...+-|++|-||+..|+.+++..-+
T Consensus        88 av~yaehA~RKTVta~DV~~Alkr~G  113 (121)
T 2ly8_A           88 SVTYTEHAKRKTVTSLDVVYALKRQG  113 (121)
T ss_dssp             HHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence            99999999999999999999977543

>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}

Probab=99.95  E-value=2.3e-28  Score=226.58  Aligned_cols=176  Identities=34%  Similarity=0.504  Sum_probs=115.5

Q ss_pred             chhhhhccCchhHHHHHHHhhccc---ccccchHHHHHHHHHHHHHhhhhccccccccccccccccccC---------CC
Q psy2783          52 STELLIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKST---------GG  119 (340)
Q Consensus        52 st~lLIpk~pF~RLVREI~~~~~~---~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~---------~~  119 (340)
                      ...|||||+||+||||||++++.+   ++|||++||.|||||+|+|||+||||+||||+||||||....         |.
T Consensus         7 ~~~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg~   86 (235)
T 2l5a_A            7 HKKLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRGQ   86 (235)
T ss_dssp             ----CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSCS
T ss_pred             cccccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhhc
Confidence            346999999999999999999976   899999999999999999999999999999999999998531         11


Q ss_pred             CC-Ccchhhhh-hhc--------------CCC--------CCCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhH
Q psy2783         120 KA-PRKQLATK-AAR--------------KSA--------PATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQR  175 (340)
Q Consensus       120 kA-PRKqlAsk-~~~--------------ks~--------~~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~R  175 (340)
                      .. |....... .+.              .+.        +.+|..-.    ..|..  +.+.   ...+.---.-+...
T Consensus        87 ~~~p~evme~~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~----dnGh~--~~l~---~~~~~~~~~~r~~~  157 (235)
T 2l5a_A           87 FLVPRGSMERHKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVE----DNGHI--KTLT---ANNSTKDKRTKYTS  157 (235)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCC----CCCCC--CSCC---CCCGGGCCSSTHHH
T ss_pred             cCCchhHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceee----eCcHH--HHhh---cCCCCCccchhHHH
Confidence            11 11100000 000              000        11111100    00100  0000   00000000023333


Q ss_pred             HHHHHHHhc-------cccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         176 LVREIAQDF-------KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       176 LVrEI~~~~-------~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      +.+++.+-.       ..--|+..++.+.|-++.|.||-.+-.||..+|-||+|-||.+.|+.+++..
T Consensus       158 vLrD~i~i~~~RlaRrgGVkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr  225 (235)
T 2l5a_A          158 VLRDIIDISDEEDGDKGGVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR  225 (235)
T ss_dssp             HHHHHHHHTCCTTSCCTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHH
T ss_pred             HHHHhhcccHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHh
Confidence            444443310       1346999999999999999999999999999999999999999999998764

>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}

Probab=99.92  E-value=8.4e-27  Score=184.00  Aligned_cols=62  Identities=89%  Similarity=1.171  Sum_probs=59.9

Q ss_pred             hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +|||||+||+||||||++++++++|||++|+.|||||+|+|||+||||+|+||+|+||||.+
T Consensus         1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~   62 (77)
T 2hue_B            1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIM   62 (77)
T ss_dssp             -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence            58999999999999999999999999999999999999999999999999999999999986

>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}

Probab=99.92  E-value=1.8e-26  Score=184.03  Aligned_cols=61  Identities=56%  Similarity=0.835  Sum_probs=59.1

Q ss_pred             hhhccCchhHHHHHHHhhcc--cccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          55 LLIRKLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        55 lLIpk~pF~RLVREI~~~~~--~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      |||||+||+||||||+++++  .++|||++|+.|||||+|+|||+||||+|+||+||||||.+
T Consensus         2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~   64 (82)
T 3nqj_A            2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLF   64 (82)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred             CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCc
Confidence            79999999999999999997  68999999999999999999999999999999999999986

>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.2e-24  Score=181.97  Aligned_cols=55  Identities=67%  Similarity=1.005  Sum_probs=53.4

Q ss_pred             hccCCchhHHHHHHHHhccc---cccccHHHHHHHHHHHHHHHHHhhhchhhhhccCC
Q psy2783         167 LIRKLPFQRLVREIAQDFKT---DLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAK  221 (340)
Q Consensus       167 LIpk~pF~RLVrEI~~~~~~---~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~Hak  221 (340)
                      ||||+||+||||||++++++   ++|||++||.|||||+|+|||+||||+||||+||.
T Consensus         1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~   58 (121)
T 2ly8_A            1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLV   58 (121)
T ss_dssp             CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCC
Confidence            79999999999999999987   89999999999999999999999999999999994

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=99.70  E-value=2.5e-18  Score=130.78  Aligned_cols=64  Identities=23%  Similarity=0.264  Sum_probs=61.1

Q ss_pred             ccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         168 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       168 Ipk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      ||++||.||+||+     ++.||+.+|+++||+++|.|++.||+|||.||.|++|+||+++||+++.+-
T Consensus         3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~   66 (68)
T 1b67_A            3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM   66 (68)
T ss_dssp             SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred             CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence            7999999999998     579999999999999999999999999999999999999999999999753

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=99.48  E-value=8e-15  Score=112.34  Aligned_cols=64  Identities=27%  Similarity=0.308  Sum_probs=60.5

Q ss_pred             hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      .||+.||.||+|++     +..||+.+|+++|||++|.|+..+++|++.||.|++|.||+++|++|+.+
T Consensus         6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~   69 (70)
T 1ku5_A            6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK   69 (70)
T ss_dssp             CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred             cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            58999999999986     46899999999999999999999999999999999999999999999864

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=99.34  E-value=1.7e-13  Score=110.24  Aligned_cols=71  Identities=14%  Similarity=0.210  Sum_probs=63.4

Q ss_pred             hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      ++++++||++++.|++|++..   ++.+|+.+|+++||+|+|.|+..|+++||.||.|++|.||+++|+.++..
T Consensus         3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~   73 (93)
T 1n1j_A            3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS   73 (93)
T ss_dssp             ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence            467899999999999999854   36899999999999999999999999999999999999999999999975

>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A

Probab=99.33  E-value=2.2e-13  Score=103.37  Aligned_cols=54  Identities=22%  Similarity=0.236  Sum_probs=51.8

Q ss_pred             hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ||++||+||+|++     ++.+|+.+|+.+||+++|.|++.||+|+|.||.|+||+|..
T Consensus         3 lP~a~v~Ri~k~~-----~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~   56 (68)
T 1b67_A            3 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIK   56 (68)
T ss_dssp             SCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             CCccHHHHHHhcC-----CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence            7999999999999     57999999999999999999999999999999999999975

>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*

Probab=99.12  E-value=6.2e-12  Score=122.56  Aligned_cols=50  Identities=42%  Similarity=0.525  Sum_probs=12.9

Q ss_pred             chhhhccccCCCCCchhhhhhhhhhccCCCCCCCCCCCCCCCccchhhhH
Q psy2783         254 RTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI  303 (340)
Q Consensus       254 rtkq~arkstggkap~kqla~ka~~k~~p~~~gv~k~h~~rp~tval~ei  303 (340)
                      |||||||||||||+|+||+++|++++++|.++|++++|||||||+|+.|.
T Consensus         3 ~tk~tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~   52 (361)
T 2r10_A            3 DPFTTARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE   52 (361)
T ss_dssp             ------------------------------------CCSSCCSCCBCCCS
T ss_pred             cccccccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence            79999999999999999999999999999999999999999999998775

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=98.99  E-value=1.9e-10  Score=101.17  Aligned_cols=141  Identities=13%  Similarity=0.045  Sum_probs=114.0

Q ss_pred             hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccccCCCCCCcchhhhhhhcCCCC
Q psy2783          57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAP  136 (340)
Q Consensus        57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~~~kAPRKqlAsk~~~ks~~  136 (340)
                      +|+.|..|+.|+-+    .+.|...+|-++|+++.|.|+..+-.+++..|-|++|-|.+-     ---    ..+-..  
T Consensus         5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a-----~DV----~~a~~~--   69 (154)
T 1f1e_A            5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLME-----EHL----KALADV--   69 (154)
T ss_dssp             CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECH-----HHH----HHHHHH--
T ss_pred             CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCH-----HHH----HHHHHh--
Confidence            67777778777654    348999999999999999999999999999999999999851     000    000000  


Q ss_pred             CCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhh
Q psy2783         137 ATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLC  216 (340)
Q Consensus       137 ~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lc  216 (340)
                                        ...-.|-..-++.||+.|..||.|+-     ...|+..+|-++|+++.|.|+..+.++|+..
T Consensus        70 ------------------lg~~~v~d~~~l~lP~a~V~Ri~k~~-----g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~  126 (154)
T 1f1e_A           70 ------------------LMVEGVEDYDGELFGRATVRRILKRA-----GIERASSDAVDLYNKLICRATEELGEKAAEY  126 (154)
T ss_dssp             ------------------HTCTTSTTCCSCCCCHHHHHHHHHHT-----TCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------------------cccccCCccccccCCccHHHHHHHHc-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                              00111223356789999999999986     4679999999999999999999999999999


Q ss_pred             hccCCceecCCCCcchhhh
Q psy2783         217 AIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       217 a~HakRVTl~~kDm~L~~~  235 (340)
                      |-|++|-||.+.|+.++..
T Consensus       127 a~ha~RKTIt~eDV~~Al~  145 (154)
T 1f1e_A          127 ADEDGRKTVQGEDVEKAIT  145 (154)
T ss_dssp             HHHTTCSEECHHHHHHHHH
T ss_pred             HHHcCCCccCHHHHHHHHH
Confidence            9999999999999999864

>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2

Probab=98.92  E-value=2.4e-10  Score=87.37  Aligned_cols=55  Identities=27%  Similarity=0.306  Sum_probs=51.5

Q ss_pred             hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      -||+.||.||+|++     ...||+.+|+++|||++|.|+..+++|++.||.|++|.|.+
T Consensus         6 ~lp~a~v~Rl~r~~-----g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~   60 (70)
T 1ku5_A            6 ELPIAPVDRLIRKA-----GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVK   60 (70)
T ss_dssp             CSCHHHHHHHHHHT-----TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEC
T ss_pred             cCChHHHHHHHHHc-----CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence            48999999999986     46899999999999999999999999999999999999875

>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=98.76  E-value=1.4e-09  Score=87.39  Aligned_cols=62  Identities=10%  Similarity=0.173  Sum_probs=54.5

Q ss_pred             cchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          51 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        51 kst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ++++++||++++.|+++++..   .+.+|+.+|..+||+|+|.|+..|++++|.||.|++|.|.+
T Consensus         3 ~~~d~~LP~a~i~ri~K~~~~---~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~   64 (93)
T 1n1j_A            3 REQDIYLPIANVARIMKNAIP---QTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN   64 (93)
T ss_dssp             ----CCCCHHHHHHHHHHTSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred             CcccccCChhHHHHHHHHhCC---ccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence            467899999999999999854   36899999999999999999999999999999999999975

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=98.01  E-value=1.3e-06  Score=71.61  Aligned_cols=71  Identities=20%  Similarity=0.207  Sum_probs=59.0

Q ss_pred             hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783         162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~  237 (340)
                      ++..--||+.+..||.+..    . .-|+..+|.++|++..|.|+.++.+||..+|-|++|-||++.|+.++++-.
T Consensus        24 r~~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~   94 (103)
T 2yfw_B           24 RDNIQGITKPAIRRLARRG----G-VKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ   94 (103)
T ss_dssp             ------CCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             hhhhccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence            3444459999999988754    2 259999999999999999999999999999999999999999999998743

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=98.00  E-value=1.4e-06  Score=71.42  Aligned_cols=71  Identities=20%  Similarity=0.185  Sum_probs=61.7

Q ss_pred             hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783         162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~  237 (340)
                      ++..--||+.+..||.+..    . .-|+..+|.++|++..|.|+.++.+||..+|-|++|-||++.|+.++++-.
T Consensus        24 r~~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~   94 (103)
T 1tzy_D           24 RDNIQGITKPAIRRLARRG----G-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ   94 (103)
T ss_dssp             CCGGGGSCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred             hhhcccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence            3444459999988888754    2 259999999999999999999999999999999999999999999998743

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=97.96  E-value=2e-06  Score=70.62  Aligned_cols=70  Identities=20%  Similarity=0.223  Sum_probs=61.6

Q ss_pred             hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      +...--||+.+-.||++..     ..-|+..+|.++|+++.|.||.++.+||..++-|++|-||+..|+.+++.-
T Consensus        23 r~~i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr   92 (102)
T 1id3_B           23 RDNIQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKR   92 (102)
T ss_dssp             -CCGGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence            3444469999999998764     347999999999999999999999999999999999999999999999874

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=97.96  E-value=4.1e-06  Score=69.72  Aligned_cols=76  Identities=17%  Similarity=0.150  Sum_probs=62.9

Q ss_pred             hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccccccc
Q psy2783         165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTECS  244 (340)
Q Consensus       165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~~~~  244 (340)
                      ++-||+..-.||+++-     ...++..++.++|++++|.|+..+-.|++..|-||+|-||...|+.|+++--+.+....
T Consensus         5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~   79 (111)
T 3b0c_T            5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKM   79 (111)
T ss_dssp             -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTB
T ss_pred             CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCccccc
Confidence            5678888888887775     46899999999999999999999999999999999999999999999988766665544


Q ss_pred             c
Q psy2783         245 T  245 (340)
Q Consensus       245 ~  245 (340)
                      .
T Consensus        80 ~   80 (111)
T 3b0c_T           80 P   80 (111)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=97.86  E-value=3.3e-06  Score=66.79  Aligned_cols=70  Identities=20%  Similarity=0.199  Sum_probs=61.5

Q ss_pred             hhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         162 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       162 kst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      +...--||+.+-.||.+..     ..-|+..+|.++|++..|.|+-.+.+||..++-|++|-||+..|+.+++.-
T Consensus         5 r~~~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~   74 (84)
T 2hue_C            5 RDNIQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKR   74 (84)
T ss_dssp             GGGCCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred             cccCCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHH
Confidence            3444568999988888754     347999999999999999999999999999999999999999999998774

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=97.75  E-value=5.4e-06  Score=64.25  Aligned_cols=66  Identities=14%  Similarity=0.211  Sum_probs=59.9

Q ss_pred             hhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         166 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       166 lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      ..+|+++..|+++++..    +.++..+|.++|++++|.|+..|-..|+..+.|.+|-||.++|++.+..
T Consensus         3 ~~LP~A~V~rI~K~~~p----~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~   68 (76)
T 3b0c_W            3 RTVPRGTLRKIIKKHKP----HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAK   68 (76)
T ss_dssp             -CCCHHHHHHHHHHHCT----TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred             CcccccHHHHHHHHhCC----CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            36799999999988753    6799999999999999999999999999999999999999999988765

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=97.63  E-value=1.8e-05  Score=67.30  Aligned_cols=74  Identities=19%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .++.+|.++-.|++++...   +..++..+|..+|++|+|.|+..|=..|+..+.|.+|-||...|+..+..-.+.+
T Consensus         6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~   79 (128)
T 2byk_B            6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFE   79 (128)
T ss_dssp             -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCT
T ss_pred             ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcH
Confidence            4678999999999988754   3689999999999999999999999999999999999999999999887765544

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=97.61  E-value=2.9e-05  Score=65.15  Aligned_cols=65  Identities=26%  Similarity=0.380  Sum_probs=56.1

Q ss_pred             hHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       174 ~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .|+|++...+  .+..+..+++.+|-|.+|.|+..+-.|+...|-||+|-||.+.|+.|+.+-...|
T Consensus        34 ~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L   98 (113)
T 4dra_A           34 GCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL   98 (113)
T ss_dssp             HHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHH
Confidence            4566665544  2577999999999999999999999999999999999999999999998865554

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=97.58  E-value=2.6e-05  Score=63.03  Aligned_cols=68  Identities=21%  Similarity=0.129  Sum_probs=56.9

Q ss_pred             hhHHHHHHHHhcc--ccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         173 FQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       173 F~RLVrEI~~~~~--~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      +.--|-.|+++..  .++.+.++++.+|-|.+|.|+..+-.|+...|-||+|-||.+.|+.|+.+-...|
T Consensus        14 l~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L   83 (90)
T 3v9r_A           14 LWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL   83 (90)
T ss_dssp             HHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence            4444555555542  2478999999999999999999999999999999999999999999998865554

>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2

Probab=97.53  E-value=2.3e-05  Score=68.89  Aligned_cols=63  Identities=11%  Similarity=0.098  Sum_probs=58.0

Q ss_pred             ccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhh
Q psy2783         168 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPS  234 (340)
Q Consensus       168 Ipk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~  234 (340)
                      +|+.|..||+|+-+    +..|...+|-++|+++.|.|+..+-.+|+..|-|++|-||++.|+.++.
T Consensus         5 LP~a~V~Riik~~l----g~~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~   67 (154)
T 1f1e_A            5 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALA   67 (154)
T ss_dssp             CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred             CCccHHHHHHHhcC----CccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence            68888888887754    3589999999999999999999999999999999999999999999887

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=97.51  E-value=3e-05  Score=69.66  Aligned_cols=71  Identities=13%  Similarity=0.251  Sum_probs=64.0

Q ss_pred             hhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         161 QKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       161 Qkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      ....++.+|+++-.|+++++..    +.++..+|.++|+++++.|+..|-..||..+.|.+|-||.+.||..++.
T Consensus         9 ~~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~   79 (179)
T 1jfi_B            9 GNDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALE   79 (179)
T ss_dssp             ---CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             CchhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence            3456789999999999999864    6899999999999999999999999999999999999999999999876

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=97.45  E-value=5.8e-05  Score=65.45  Aligned_cols=67  Identities=25%  Similarity=0.325  Sum_probs=56.4

Q ss_pred             HHHHHHHhc--cccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccccc
Q psy2783         176 LVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNLTE  242 (340)
Q Consensus       176 LVrEI~~~~--~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~~~  242 (340)
                      -|-.|+++.  ..++.+..+++.+|-|.+|.|+..+-.|+...|-||+|-||.+.|+.|+.+-...|-.
T Consensus        24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~   92 (140)
T 3vh5_A           24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLK   92 (140)
T ss_dssp             HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHH
T ss_pred             HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHH
Confidence            344444443  2468899999999999999999999999999999999999999999999887655543

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=97.43  E-value=8.9e-05  Score=56.99  Aligned_cols=60  Identities=20%  Similarity=0.400  Sum_probs=53.7

Q ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         175 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       175 RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      ++|..|+.+.+- -+|+..+...|-|-+|.|...+.+|+..+|-||+|-||...|++|+..
T Consensus         5 ~~i~~iLk~~G~-~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~   64 (68)
T 1taf_A            5 QVIMSILKELNV-QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE   64 (68)
T ss_dssp             HHHHHHHHHTTC-CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHCCC-cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence            566677776553 399999999999999999999999999999999999999999999865

>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*

Probab=97.36  E-value=3e-05  Score=75.51  Aligned_cols=46  Identities=46%  Similarity=0.596  Sum_probs=12.6

Q ss_pred             CCCCCCCCCCCCcchhhhhcccCCCCCCCCCCCcccCCCchhhhhh
Q psy2783           1 TARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREI   46 (340)
Q Consensus         1 ta~k~~g~kaprk~~a~k~a~ks~p~~~~~~~~~r~rpg~~alrEI   46 (340)
                      ||+|++||++|++++++++++++.+.+++.++++||+||++++.|.
T Consensus         7 tarkstggkaprk~~~~k~~rk~~~~~~~~kkp~R~rPGt~a~~e~   52 (361)
T 2r10_A            7 TARKSTGGKAPRKGGMVVKKRKLATEAGGSDERPKYLPGKHPKNQE   52 (361)
T ss_dssp             --------------------------------CCSSCCSCCBCCCS
T ss_pred             cccCCCCCCCCCccccccccCCCCCCCCCCCCCcccCCCccccccc
Confidence            6899999999999999999998888888889999999999998765

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=97.34  E-value=5.9e-05  Score=62.66  Aligned_cols=65  Identities=26%  Similarity=0.364  Sum_probs=54.9

Q ss_pred             hHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       174 ~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .|+|++...+  .+.++..+++.+|-|.++.|+..+-.|+...|-||+|-||...|+.|+.+--..+
T Consensus        26 ~rI~~~~g~~--~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l   90 (107)
T 3b0b_B           26 GCLCQDVAED--KGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL   90 (107)
T ss_dssp             HHHHHHHHHH--HTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred             HHHHHHHhhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence            3455554432  3579999999999999999999999999999999999999999999998865444

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=97.29  E-value=0.00017  Score=58.23  Aligned_cols=82  Identities=18%  Similarity=0.259  Sum_probs=55.8

Q ss_pred             hHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchh
Q psy2783         154 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWP  233 (340)
Q Consensus       154 lrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~  233 (340)
                      +.||+..- ..+.=-..+|-.|+ +-|+..-...-+...+|..+|..|+|.|+..|-+.|+.+|.|.+|-||.++|+.++
T Consensus         4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A   81 (97)
T 1n1j_B            4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA   81 (97)
T ss_dssp             -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred             HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence            45666542 22333345666665 45565544446899999999999999999999999999999999999999999998


Q ss_pred             hhhh
Q psy2783         234 SQWC  237 (340)
Q Consensus       234 ~~i~  237 (340)
                      ..=.
T Consensus        82 v~~~   85 (97)
T 1n1j_B           82 ITKF   85 (97)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            5533

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=97.20  E-value=0.00012  Score=56.59  Aligned_cols=64  Identities=20%  Similarity=0.206  Sum_probs=53.2

Q ss_pred             hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      .+|..|..++...+    +- -+...+|..+|-+-.|.++-++.++|..++-|+||-||+..||.++++
T Consensus         6 ~lp~~~v~~iaes~----Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk   69 (70)
T 1taf_B            6 SISAESMKVIAESI----GV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK   69 (70)
T ss_dssp             CCCHHHHHHHHHHT----TC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHC----CC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence            35555655554433    21 388999999999999999999999999999999999999999999865

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=97.17  E-value=0.00029  Score=59.03  Aligned_cols=74  Identities=18%  Similarity=0.229  Sum_probs=62.8

Q ss_pred             hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      ++=.+.+|-.| |+.|+..-.+.-++..+|..+|..|+|.|+..|.+.|+.+|...+|-||.++|+..+..=.+.
T Consensus        36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~  109 (119)
T 4g92_C           36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDM  109 (119)
T ss_dssp             CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred             ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCch
Confidence            33456789998 567777555567999999999999999999999999999999999999999999988654333

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=96.70  E-value=0.00094  Score=60.07  Aligned_cols=158  Identities=18%  Similarity=0.208  Sum_probs=115.0

Q ss_pred             cCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccccCCCCCCcchhhhhhhcCCCCCC
Q psy2783          59 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAPAT  138 (340)
Q Consensus        59 k~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~~~kAPRKqlAsk~~~ks~~~~  138 (340)
                      +-.|.-.+..|..+...+..+..+|+.-|-.=.++++..+=..+.-++.|.+|.|..+.     --+.+   .+.     
T Consensus         2 ~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~-----eIq~A---vrl-----   68 (192)
T 2jss_A            2 KETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAR-----EIQTA---VRL-----   68 (192)
T ss_dssp             CSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHH-----HHHHH---HHH-----
T ss_pred             cchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHH-----HHHHH---HHH-----
Confidence            34577788888888888899999999999888888888888888888888888665310     00000   000     


Q ss_pred             CCCCCCCcCCCCchh-------hHHHHhhhhh---------hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHH
Q psy2783         139 GGVKKPHRYRPGTVA-------LREIRRYQKS---------TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEAS  202 (340)
Q Consensus       139 ~~~~~~~r~rpg~~a-------lrEIr~yQks---------t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAa  202 (340)
                              .=||..+       .+-+-+|..+         .+|.+|-.++.|+.++-.   ....|+..+|-..|=..-
T Consensus        69 --------~lpgeLak~Av~eG~kAv~k~~~sk~~~s~s~ragl~fPv~ri~R~lk~~~---~a~~Rv~~~A~vyLaavL  137 (192)
T 2jss_A           69 --------ILPGELAKHAVSEGTRAVTKYSSSTQAQSSSARAGLQFPVGRIKRYLKRHA---TGRTRVGSKAAIYLTAVL  137 (192)
T ss_dssp             --------HSCSHHHHHHHHHHHHHHHHHHHHCSSSCHHHHSSCCSCHHHHHHHHHHTT---CSSCCCCTTTHHHHHHHH
T ss_pred             --------hcCHHHHHHHHHHHHHHHHhhccccccccccccCCCcCCHHHHHHHHHhcC---ccccccccChHHHHHHHH
Confidence                    1122211       1123344332         267888888888876621   113689999999999999


Q ss_pred             HHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         203 EAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       203 Ea~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      |.+...++|.+...|.|.++.+|.|+|++|+.+-.++|
T Consensus       138 Eyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL  175 (192)
T 2jss_A          138 EYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDEL  175 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHH
Confidence            99999999999999999999999999999997655554

>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3

Probab=96.45  E-value=0.0018  Score=50.79  Aligned_cols=66  Identities=20%  Similarity=0.287  Sum_probs=59.0

Q ss_pred             hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      +++|--.+.||++|    .....+..++-++|.+-|+.|+-+..+.+..+|.|.+--||.++|++|++.-
T Consensus         5 vl~k~~L~~Lv~~i----dp~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler   70 (76)
T 1h3o_B            5 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER   70 (76)
T ss_dssp             SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred             cccHHHHHHHHHhc----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence            45677777888888    3468899999999999999999999999999999999999999999999764

>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=96.34  E-value=0.0014  Score=53.13  Aligned_cols=70  Identities=13%  Similarity=0.153  Sum_probs=52.1

Q ss_pred             CCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       170 k~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .+|-.|+ +-|+..-.+.-+...+|...|-.|+|.|+..|.+.++.+|.|.+|-||.++|++++..-.+++
T Consensus        11 ~fPvaRI-krimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l   80 (98)
T 1jfi_A           11 RFPPARI-KKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDP   80 (98)
T ss_dssp             CCCHHHH-HHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----
T ss_pred             CCChHHH-HHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchh
Confidence            4566665 455555444459999999999999999999999999999999999999999999986544433

>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A

Probab=96.06  E-value=0.0032  Score=54.33  Aligned_cols=83  Identities=10%  Similarity=0.056  Sum_probs=52.9

Q ss_pred             CCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhh-ccCCceecCCCCcchhhh-------hhcccc
Q psy2783         170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIHWPSQ-------WCDNLT  241 (340)
Q Consensus       170 k~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca-~HakRVTl~~kDm~L~~~-------i~~~~~  241 (340)
                      .+|-.|+ +.|+..-...-++..+|..++..|+|.|+-.|.+.|+.+| ...+|-||.++||..+..       +...++
T Consensus        19 ~LPlaRI-KrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~divP   97 (140)
T 2byk_A           19 FLPLSRV-RTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLLQIVP   97 (140)
T ss_dssp             -----------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGTTTSC
T ss_pred             CCCHHHH-HHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHhcccc
Confidence            4455554 5666654445689999999999999999999999999999 999999999999988754       333344


Q ss_pred             cccccccccccc
Q psy2783         242 ECSTWQHNSTMA  253 (340)
Q Consensus       242 ~~~~~~~~~~ma  253 (340)
                      ....+..+-+|-
T Consensus        98 ~ki~l~~~~~~~  109 (140)
T 2byk_A           98 QKIRVHQFQEML  109 (140)
T ss_dssp             SCC---------
T ss_pred             chhhHHHHHHHH
Confidence            444444444443

>2k3y_A Chromatin modification-related protein EAF3; dimethylated histone H3K36, EAF3-H3K36ME2 fusion, chromo barrel domain, histone deacetylase; HET: M2L; NMR {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.0025  Score=54.91  Aligned_cols=25  Identities=72%  Similarity=1.084  Sum_probs=22.2

Q ss_pred             hhhhhhhh-hccCCCCCCCCCCCCCC
Q psy2783         270 KQLATKAA-RKSAPATGGVKKPHRYR  294 (340)
Q Consensus       270 kqla~ka~-~k~~p~~~gv~k~h~~r  294 (340)
                      |+|+.++. .|++|+++|||++||||
T Consensus       111 KeL~~kak~~Ks~p~tgGvkk~hr~r  136 (136)
T 2k3y_A          111 KRLANEAGSTGSAPATGGVXKPHRYR  136 (136)
T ss_dssp             HHHHHHSCSCCCSTTCTTSCCCSSCC
T ss_pred             HHHHHHHHhhccCCCCCCccCCCcCC
Confidence            67887775 78999999999999997

>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=95.61  E-value=0.0042  Score=50.77  Aligned_cols=57  Identities=21%  Similarity=0.189  Sum_probs=50.3

Q ss_pred             hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      .--||+.+-.||++..     ...|+..+|.++|++..|.|+..+-+|+..++-|++|-|.+
T Consensus        26 i~~ip~~~I~Rlar~~-----Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt   82 (102)
T 1id3_B           26 IQGITKPAIRRLARRG-----GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVT   82 (102)
T ss_dssp             GGGSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             cCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence            3448999988888764     34799999999999999999999999999999999998874

>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B

Probab=95.27  E-value=0.006  Score=47.98  Aligned_cols=57  Identities=21%  Similarity=0.155  Sum_probs=49.7

Q ss_pred             hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      .--||+.+-.||+|..     ...|+..++.++|++..|.|+-.+-+|+..++-|++|-|.+
T Consensus         8 ~~~ip~~~I~Riar~~-----Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt   64 (84)
T 2hue_C            8 IQGITKPAIRRLARRG-----GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVT   64 (84)
T ss_dssp             CCSSCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             CCCCCHHHHHHHHHHc-----CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence            3348898888888754     34799999999999999999999999999999999998875

>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T

Probab=95.08  E-value=0.0091  Score=49.48  Aligned_cols=57  Identities=18%  Similarity=0.196  Sum_probs=46.6

Q ss_pred             hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ++-||+..-.||+++-     ...++..++.++|+++.+.|+..+-.|++..|-|++|-|++
T Consensus         5 d~~lP~a~I~Ri~r~~-----g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~   61 (111)
T 3b0c_T            5 EPEIASSLIKQIFSHY-----VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVE   61 (111)
T ss_dssp             -----CHHHHHHHHHH-----HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             CCCCCHHHHHHHHHHC-----CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence            5668888777777666     46899999999999999999999999999999999998875

>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...

Probab=95.03  E-value=0.007  Score=49.28  Aligned_cols=59  Identities=20%  Similarity=0.156  Sum_probs=50.1

Q ss_pred             chhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          52 STELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        52 st~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +..--||+.+..||++..    . .-|+..+|.++|++..|.|+..+.+|+..+|-|++|.|.+
T Consensus        25 ~~~~gip~~~I~Rlar~~----G-~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt   83 (103)
T 1tzy_D           25 DNIQGITKPAIRRLARRG----G-VKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVT   83 (103)
T ss_dssp             CGGGGSCHHHHHHHHHHT----T-CCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             hhcccCCHHHHHHHHHHc----C-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence            333448999888888754    2 2599999999999999999999999999999999998874

>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*

Probab=94.88  E-value=0.023  Score=48.21  Aligned_cols=67  Identities=13%  Similarity=0.157  Sum_probs=56.8

Q ss_pred             CchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783         171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       171 ~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~  237 (340)
                      ..|...|.-|+.+...|..+...|+..|-.-.+++.-.+-..|..++.|.+|-||..+|||.+.+++
T Consensus        33 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl   99 (123)
T 2nqb_D           33 ESYAIYIYTVLKQVHPDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLL   99 (123)
T ss_dssp             CCSHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHh
Confidence            3356666666666677899999999999988888888888889999999999999999999998763

>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}

Probab=94.84  E-value=0.0068  Score=49.41  Aligned_cols=58  Identities=21%  Similarity=0.186  Sum_probs=48.1

Q ss_pred             hhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          53 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        53 t~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ..--||+.+..||++..     ..-|+..+|.++|++..|.|+..+.+|+..+|-|++|.|.+
T Consensus        26 ~~~gip~~~I~Rlar~~-----G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt   83 (103)
T 2yfw_B           26 NIQGITKPAIRRLARRG-----GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVT   83 (103)
T ss_dssp             ----CCHHHHHHHHHHT-----TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             hhccCCHHHHHHHHHHc-----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCc
Confidence            33348999988888754     22599999999999999999999999999999999998874

>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...

Probab=94.79  E-value=0.025  Score=48.26  Aligned_cols=67  Identities=15%  Similarity=0.152  Sum_probs=57.5

Q ss_pred             CchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783         171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       171 ~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~  237 (340)
                      ..|...|.-|+.+...|..+...|+..|-.-.+++.-.+-..|..++.|.+|-||..+|||.+.++.
T Consensus        36 esy~~YIyKVLKQVhpd~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLl  102 (126)
T 1tzy_B           36 ESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLL  102 (126)
T ss_dssp             CCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence            4466666667777777899999999999988888888888889999999999999999999998763

>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*

Probab=94.74  E-value=0.0053  Score=54.21  Aligned_cols=20  Identities=100%  Similarity=1.232  Sum_probs=12.5

Q ss_pred             cchhhhccccCCCCCchhhh
Q psy2783         253 ARTKQTARKSTGGKAPRKQL  272 (340)
Q Consensus       253 artkq~arkstggkap~kql  272 (340)
                      |||||+||||||||+|.||+
T Consensus         1 ~~~~~~~r~s~~~K~~~~~~   20 (159)
T 3a1b_A            1 ARTKQTARKSTGGKAPRKQL   20 (159)
T ss_dssp             CEEEECCCC-------CHHH
T ss_pred             CccccccccccCCCcchHHH
Confidence            79999999999999999999

>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*

Probab=94.42  E-value=0.014  Score=49.35  Aligned_cols=73  Identities=19%  Similarity=0.191  Sum_probs=62.2

Q ss_pred             hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .+|.+|-.++.|+.++-    ....|+..+|-..|=..-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus        20 agL~fPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL   92 (123)
T 2nqb_C           20 AGLQFPVGRIHRLLRKG----NYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEEL   92 (123)
T ss_dssp             HTCSSCHHHHHHHHHHT----TSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHH
T ss_pred             CCeeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHH
Confidence            35778888888887653    22359999999999999999999999999999999999999999999997755555

>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...

Probab=94.19  E-value=0.016  Score=49.28  Aligned_cols=73  Identities=19%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .+|.+|-.++.|+.++-    ....|+..+|-..|=..-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus        22 agLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL   94 (129)
T 1tzy_A           22 AGLQFPVGRVHRLLRKG----NYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEEL   94 (129)
T ss_dssp             HTCSSCHHHHHHHHHHT----TSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHH
T ss_pred             CceeccHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHH
Confidence            35778888888887653    22359999999999999999999999999999999999999999999997655554

>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C

Probab=94.18  E-value=0.014  Score=49.02  Aligned_cols=73  Identities=14%  Similarity=0.127  Sum_probs=62.8

Q ss_pred             hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      ..|.+|-.++.|+.++-    ....|+..+|-..|=..-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus        19 agLqfPV~ri~R~Lk~~----~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL   91 (120)
T 2f8n_G           19 AGVIFPVGRMLRYIKKG----HPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEEL   91 (120)
T ss_dssp             HTCSSCHHHHHHHHHHH----SSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHH
T ss_pred             cCccCChHHHHHHHHcC----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHH
Confidence            36788888888888763    22359999999999999999999999999999999999999999999997655555

>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B

Probab=94.09  E-value=0.025  Score=47.94  Aligned_cols=60  Identities=13%  Similarity=0.166  Sum_probs=49.0

Q ss_pred             hhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          53 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        53 t~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      .++.+|.++-.|++++...   ...++..+|..+|++|+|.|+..|-..++..+.|.+|-|.+
T Consensus         6 ~d~~LP~A~I~rImK~~~p---d~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~   65 (128)
T 2byk_B            6 EDLNLPNAVIGRLIKEALP---ESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTIT   65 (128)
T ss_dssp             -----CCSHHHHHHHHHSC---TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             ccccCCHHHHHHHHHHhCc---ccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence            4678999999999887754   46899999999999999999999999999999999988764

>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W

Probab=94.03  E-value=0.017  Score=44.43  Aligned_cols=56  Identities=14%  Similarity=0.226  Sum_probs=50.2

Q ss_pred             hhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          56 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        56 LIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      .+|+++..|+++++..    +.++..+|.+++++++|.|+..|-..++-.+.|.+|-|.+
T Consensus         4 ~LP~A~V~rI~K~~~p----~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~   59 (76)
T 3b0c_W            4 TVPRGTLRKIIKKHKP----HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIK   59 (76)
T ss_dssp             CCCHHHHHHHHHHHCT----TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBC
T ss_pred             cccccHHHHHHHHhCC----CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            4788888999988753    5789999999999999999999999999999999998875

>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3

Probab=93.87  E-value=0.021  Score=51.24  Aligned_cols=61  Identities=10%  Similarity=0.230  Sum_probs=53.5

Q ss_pred             cchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          51 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        51 kst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ...++.+|+++-.|+++++..    +.++..+|.++|+++++.|+..|-..+|-.+.|.+|-|.+
T Consensus        10 ~~eD~~LP~A~V~RImK~alp----~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~   70 (179)
T 1jfi_B           10 NDDDLTIPRAAINKMIKETLP----NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS   70 (179)
T ss_dssp             --CCCCCCHHHHHHHHHHHST----TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred             chhhhhcCHHHHHHHHHHhCC----ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence            445788999999999999864    6899999999999999999999999999988898888774

>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1

Probab=93.76  E-value=0.018  Score=50.27  Aligned_cols=73  Identities=19%  Similarity=0.192  Sum_probs=62.1

Q ss_pred             hhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         164 TELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       164 t~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      ..|.+|-.++.|+.++-    ....|+..+|-..|=..-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus        41 agLqFPVgrI~R~LK~~----~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL  113 (149)
T 2f8n_K           41 AGLQFPVGRVHRLLRKG----NYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEEL  113 (149)
T ss_dssp             HTCSSCHHHHHHHHHHT----TSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHH
T ss_pred             CCeeccHHHHHHHHHcc----ccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHH
Confidence            36778888888887653    22359999999999999999999999999999999999999999999997755555

>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1

Probab=93.64  E-value=0.017  Score=49.22  Aligned_cols=72  Identities=22%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .|.+|-.++.|+.++-    ....|+..+|-..|=.+-|.+...++|.+...|.|.++.+|.|+||+|+.+-.++|
T Consensus        23 gLqfPV~rI~R~Lk~~----~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL   94 (131)
T 1id3_C           23 GLTFPVGRVHRLLRRG----NYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDEL   94 (131)
T ss_dssp             TCSSCHHHHHHHHHTT----CSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHH
T ss_pred             CeecCHHHHHHHHHcc----ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHH
Confidence            5677777777776542    23359999999999999999999999999999999999999999999997755554

>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1

Probab=93.19  E-value=0.058  Score=45.81  Aligned_cols=73  Identities=14%  Similarity=0.093  Sum_probs=61.8

Q ss_pred             hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhhccc
Q psy2783         165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWCDNL  240 (340)
Q Consensus       165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~~~~  240 (340)
                      .|.+|-.++.|+.++-.   ....|+..+|-..|=..-|.+...++|-+...|.|.++.+|.|+||+|+.+-.++|
T Consensus        25 gLqfPV~ri~R~Lk~~~---~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL   97 (128)
T 1f66_C           25 GLQFPVGRIHRHLKSRT---TSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEEL   97 (128)
T ss_dssp             TCSSCHHHHHHHHHHTS---CSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHH
T ss_pred             CccCChHHHHHHHHHcc---cchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHH
Confidence            57788888888876531   12358999999999999999999999999999999999999999999997766665

>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1

Probab=91.65  E-value=0.17  Score=45.28  Aligned_cols=67  Identities=12%  Similarity=0.169  Sum_probs=59.7

Q ss_pred             CCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       170 k~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      +-.|.-.+.-|+.+...|..+..+|+.-|-.-.++++..+-..+..++.|.+|-||.++|||.+.++
T Consensus         2 ~~~~~~yi~kvLkqv~p~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl   68 (192)
T 2jss_A            2 KETYSSYIYKVLKQTHPDTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRL   68 (192)
T ss_dssp             CSTTHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHH
T ss_pred             cchHHHHHHHHHcccCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHH
Confidence            4457777888888777789999999999999999999999999999999999999999999998765

>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=91.58  E-value=0.15  Score=38.87  Aligned_cols=51  Identities=18%  Similarity=0.406  Sum_probs=44.2

Q ss_pred             HHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          64 RLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        64 RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ++|..|..+.+-+ +++..+...|-|-+|.|...+.+|+..+|-||+|-|.+
T Consensus         5 ~~i~~iLk~~G~~-~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~   55 (68)
T 1taf_A            5 QVIMSILKELNVQ-EYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTID   55 (68)
T ss_dssp             HHHHHHHHHTTCC-CBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred             HHHHHHHHHCCCc-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            5667777766543 99999999999999999999999999999999987654

>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}

Probab=91.08  E-value=0.12  Score=41.48  Aligned_cols=57  Identities=23%  Similarity=0.155  Sum_probs=46.6

Q ss_pred             cCchhHHHHHHHhhcc--cccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          59 KLPFQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        59 k~pF~RLVREI~~~~~--~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      |.-++--|-.|+++-.  .+..+..+++.+|-|..|.|+..+-+|....|-||+|-|++
T Consensus        11 Kaal~~~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~   69 (90)
T 3v9r_A           11 KARLWIRVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVN   69 (90)
T ss_dssp             HHHHHHHHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             HHHHHHHHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence            3445555666666542  23789999999999999999999999999999999999875

>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A

Probab=90.86  E-value=0.15  Score=42.65  Aligned_cols=51  Identities=27%  Similarity=0.368  Sum_probs=43.1

Q ss_pred             hHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          63 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        63 ~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      .|+|++...+  .+..+..+++.+|-|.+|.|+..+-.|....|-||+|.|++
T Consensus        34 ~rIvke~gae--r~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~   84 (113)
T 4dra_A           34 GCLCEEVALD--KEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTIN   84 (113)
T ss_dssp             HHHHHHHHHH--HTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             HHHHHHHHHH--cCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccC
Confidence            3555555443  25679999999999999999999999999999999999885

>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}

Probab=89.62  E-value=0.14  Score=42.45  Aligned_cols=54  Identities=22%  Similarity=0.237  Sum_probs=43.6

Q ss_pred             hhHHHHHHHhhcc--cccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          62 FQRLVREIAQDFK--TDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        62 F~RLVREI~~~~~--~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ++--|-.|+.+..  .+.++..+++.+|-|.++.|...+-.|+...|-||+|-|++
T Consensus        21 l~~~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~   76 (107)
T 3b0b_B           21 VHYTTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTIT   76 (107)
T ss_dssp             HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             HHHHHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCC
Confidence            3334444444432  25699999999999999999999999999999999998875

>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A

Probab=87.86  E-value=0.2  Score=43.30  Aligned_cols=54  Identities=24%  Similarity=0.275  Sum_probs=44.7

Q ss_pred             hhHHHHHHHhhc--ccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          62 FQRLVREIAQDF--KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        62 F~RLVREI~~~~--~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      .+--|-.|+.+.  ..+..+..+++.+|-|.+|.|+..+-.|....|-||+|-|++
T Consensus        21 l~y~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~   76 (140)
T 3vh5_A           21 VHYTTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTIT   76 (140)
T ss_dssp             HHHHHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             HHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence            344455555543  246789999999999999999999999999999999998875

>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3

Probab=87.65  E-value=0.39  Score=36.83  Aligned_cols=54  Identities=22%  Similarity=0.199  Sum_probs=43.2

Q ss_pred             hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +|..|..+    |+.+.+- -+...+|..+|-+-.|.++-.+.+++..|+-|+||.+.+
T Consensus         7 lp~~~v~~----iaes~Gi-~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt   60 (70)
T 1taf_B            7 ISAESMKV----IAESIGV-GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLS   60 (70)
T ss_dssp             CCHHHHHH----HHHHTTC-CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred             CCHHHHHH----HHHHCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeec
Confidence            45555444    4444332 378899999999999999999999999999999998875

>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*

Probab=86.63  E-value=0.49  Score=39.32  Aligned_cols=60  Identities=15%  Similarity=0.253  Sum_probs=49.5

Q ss_pred             hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783          54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR  114 (340)
Q Consensus        54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr  114 (340)
                      +.=.+.+|..| |+.|+..-...-+...+|..++..|+|.|+..|.+.++.+|...+|-|.
T Consensus        36 d~k~~~lPvaR-IkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI   95 (119)
T 4g92_C           36 DYKIHQLPLAR-IKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTL   95 (119)
T ss_dssp             CSSCCSSCHHH-HHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             ccccCCCCHHH-HHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcc
Confidence            33456789988 6677775555679999999999999999999999999999887777665

>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3

Probab=84.76  E-value=0.56  Score=37.48  Aligned_cols=71  Identities=17%  Similarity=0.281  Sum_probs=45.4

Q ss_pred             hhhhhhhccchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          43 LREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        43 lrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +.||+..- ..+.=-..+|-.|+ +-|+..-...-+...+|..++..|+|.|+..|-+.++.+|-|.+|.|.+
T Consensus         4 ~~~~~~~~-~~~~~~~~lP~arI-krImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~   74 (97)
T 1n1j_B            4 MEEIRNLT-VKDFRVQELPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQ   74 (97)
T ss_dssp             -----------------CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             HHHHHhcc-cCCcCCCcCCHHHH-HHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence            45666542 22333446677665 5566654444689999999999999999999999999999998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	340
d1tzyc_	95	a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),	3e-47
d1tzyc_	95	a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),	1e-40
d1tzyc_	95	a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus),	8e-23
d1f1ea_	151	a.22.1.2 (A:) Archaeal histone {Archaeon Methanopy	2e-08
d1ku5a_	66	a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococc	1e-04
d1htaa_	68	a.22.1.2 (A:) Archaeal histone {Archaeon Methanoth	0.001
d1n1ja_	87	a.22.1.3 (A:) Nuclear transcription factor Y subun	0.002

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  152 bits (386), Expect = 3e-47
 Identities = 84/85 (98%), Positives = 84/85 (98%)

Query: 147 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 206
           YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 1   YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 60

Query: 207 VGLFEDTNLCAIHAKRVTIMPKDIH 231
           VGLFEDTNLCAIHAKRVTIMPKDI 
Sbjct: 61  VGLFEDTNLCAIHAKRVTIMPKDIQ 85

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score =  135 bits (342), Expect = 1e-40
 Identities = 76/76 (100%), Positives = 76/76 (100%)

Query: 36  YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 95
           YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL
Sbjct: 1   YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYL 60

Query: 96  VGLFEDTNLCAIHAKR 111
           VGLFEDTNLCAIHAKR
Sbjct: 61  VGLFEDTNLCAIHAKR 76

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]} Length = 95

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

 Score = 88.7 bits (220), Expect = 8e-23
 Identities = 48/48 (100%), Positives = 48/48 (100%)

Query: 293 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 340
           YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA
Sbjct: 1   YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSA 48

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]} Length = 151

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 20/174 (11%), Positives = 40/174 (22%), Gaps = 42/174 (24%)

Query: 61  PFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGK 120
             +R+ R+       + R    A   + +        +          + +         
Sbjct: 6   AIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKK-------- 53

Query: 121 APRKQLATKAAR--KSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVR 178
                  T      K+      V+    Y                   L  +   +R+++
Sbjct: 54  -------TLMEEHLKALADVLMVEGVEDYD----------------GELFGRATVRRILK 90

Query: 179 EIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHW 232
                     R  S AV    +        L E     A    R T+  +D+  
Sbjct: 91  R-----AGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEK 139

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]} Length = 66

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 2/62 (3%)

Query: 171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
           LP   + R I +      R    A   L E  E Y + + +     A HA R T+  +DI
Sbjct: 3   LPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDI 60

Query: 231 HW 232
             
Sbjct: 61  KL 62

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]} Length = 68

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

 Score = 34.3 bits (79), Expect = 0.001
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 189 RFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
           R    A +AL +  E     +  +    A HA R TI  +DI
Sbjct: 20  RVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (80), Expect = 0.002
 Identities = 12/62 (19%), Positives = 23/62 (37%)

Query: 171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDI 230
           LP   + R +        +    A   +QE    ++  +  + +      KR TI  +DI
Sbjct: 3   LPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDI 62

Query: 231 HW 232
            +
Sbjct: 63  LF 64

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	340
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	100.0
d1tzyc_	95	Histone H3 {Chicken (Gallus gallus), erythrocytes	100.0
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	99.34
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	98.51
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	98.39
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	97.84
d1f1ea_	151	Archaeal histone {Archaeon Methanopyrus kandleri [	97.77
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	97.32
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	97.24
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	97.21
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	97.11
d1htaa_	68	Archaeal histone {Archaeon Methanothermus fervidus	97.11
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	97.01
d1ku5a_	66	Archaeal histone {Archaeon (Pyrococcus horikoshii)	96.87
d1q9ca_	172	Histone domain of Son of sevenless protein {Human	96.39
d1h3ob_	74	TAF(II)-20, (TAF(II)-15, hTAF12), histone fold dom	95.76
d1n1ja_	87	Nuclear transcription factor Y subunit beta (Nf-Yb	95.59
d1tafa_	68	TAF(II)42 {Fruit fly (Drosophila melanogaster) [Ta	94.38
d1tafb_	70	TAF(II)62 {Fruit fly (Drosophila melanogaster) [Ta	94.24
d1jfib_	135	Negative cofactor 2, NC2, beta chain {Human (Homo	92.82
d1n1jb_	78	Nuclear transcription factor Y subunit gamma (Nf-Y	90.84
d1tzyb_	92	Histone H2B {Chicken (Gallus gallus), erythrocytes	89.48
d2huec1	82	Histone H4 {African clawed frog (Xenopus laevis) [	87.96
d2bykb1	89	Chrac-14 {Fruit fly (Drosophila melanogaster) [Tax	86.87
d1jfia_	66	Negative cofactor 2, NC2, alpha chain {Human (Homo	85.17
d2byka1	72	Chrac-16 {Fruit fly (Drosophila melanogaster) [Tax	83.8

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=2.9e-44  Score=291.66  Aligned_cols=93  Identities=90%  Similarity=1.253  Sum_probs=91.7

Q ss_pred             CCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecC
Q psy2783         147 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM  226 (340)
Q Consensus       147 ~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~  226 (340)
                      ||||++||+|||+||+||++||||+||+||||||++++++++|||++||+|||||+|+|||+||||||+||+|+||||||
T Consensus         1 ~rpGt~ALrEIRk~Qkst~lLIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~   80 (95)
T d1tzyc_           1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM   80 (95)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             CCCchHHHHHHHHHhCCcccccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcchhhhhhcc
Q psy2783         227 PKDIHWPSQWCDN  239 (340)
Q Consensus       227 ~kDm~L~~~i~~~  239 (340)
                      ++||+|+.+|+++
T Consensus        81 ~kD~~LarrirG~   93 (95)
T d1tzyc_          81 PKDIQLARRIRGE   93 (95)
T ss_dssp             HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhcc
Confidence            9999999999975

>d1tzyc_ a.22.1.1 (C:) Histone H3 {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H3
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=100.00  E-value=3.5e-36  Score=243.95  Aligned_cols=80  Identities=95%  Similarity=1.307  Sum_probs=78.7

Q ss_pred             cCCCchhhhhhhhhccchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          36 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        36 ~rpg~~alrEIr~yQkst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      |+||++||+|||+||+||+|||||+||+||||||++++++++|||++||+|||||+|+|||+||||+|+||+|+||||..
T Consensus         1 ~rpGt~ALrEIRk~Qkst~lLIpk~pF~RLVRei~~~~~~~~r~~~~Al~aLQea~E~yLv~lfeda~~~a~HakRvTl~   80 (95)
T d1tzyc_           1 YRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIM   80 (95)
T ss_dssp             CCHHHHHHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             CCCchHHHHHHHHHhCCcccccccccHHHHHHHHHHhcCCCCEeeHHHHHHHHHHHHHHHHHHHHHhHHHHHhcCCCcCC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999975

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=99.34  E-value=5.4e-14  Score=120.42  Aligned_cols=142  Identities=13%  Similarity=0.034  Sum_probs=112.9

Q ss_pred             hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccccCCCCCCcchhhhhhhcCCCC
Q psy2783          57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAP  136 (340)
Q Consensus        57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~~~kAPRKqlAsk~~~ks~~  136 (340)
                      +|++|-.|+.+++.    ++.|...+|.+.|++-.+.|.-.+=.+++.++-|++|-|...      ..-.+.-..     
T Consensus         2 lP~a~I~rilk~~~----~~~ris~da~~~l~~~~~~~~~~Ia~eA~~l~~~~~rKTi~~------edi~~a~~~-----   66 (151)
T d1f1ea_           2 LPKAAIERIFRQGI----GERRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLME------EHLKALADV-----   66 (151)
T ss_dssp             CCHHHHHHHHHTTS----TTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECH------HHHHHHHHH-----
T ss_pred             CCccHHHHHHHHhC----CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCH------HHHHHHHHh-----
Confidence            46677777776654    467999999999999999999999999999999999988741      110000000     


Q ss_pred             CCCCCCCCCcCCCCchhhHHHHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhh
Q psy2783         137 ATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLC  216 (340)
Q Consensus       137 ~~~~~~~~~r~rpg~~alrEIr~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lc  216 (340)
                        .++....+                ..++++|+++..|++++     .+..|+..+|.++|++++|.|+..++++|+.+
T Consensus        67 --~~~~~~~~----------------~~~~~fp~a~IkRi~k~-----~g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~  123 (151)
T d1f1ea_          67 --LMVEGVED----------------YDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICRATEELGEKAAEY  123 (151)
T ss_dssp             --HTCTTSTT----------------CCSCCCCHHHHHHHHHH-----TTCCEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --cccccccc----------------cccCccCHHHHHHHHHc-----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              01111112                24789999999999885     25679999999999999999999999999999


Q ss_pred             hccCCceecCCCCcchhhhh
Q psy2783         217 AIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       217 a~HakRVTl~~kDm~L~~~i  236 (340)
                      |.|+||.||+++||+++..+
T Consensus       124 a~~~kRkTI~~~DI~~Av~~  143 (151)
T d1f1ea_         124 ADEDGRKTVQGEDVEKAITY  143 (151)
T ss_dssp             HHHTTCSEECHHHHHHHHHH
T ss_pred             HHHhCCCcCCHHHHHHHHHH
Confidence            99999999999999999765

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=98.51  E-value=1.7e-08  Score=74.61  Aligned_cols=63  Identities=24%  Similarity=0.274  Sum_probs=56.8

Q ss_pred             ccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         168 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       168 Ipk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      +|+.+..|++++.     .+.+++.+|.++|++++|.|+..|.++++.++.|+||-||++.|+.++..
T Consensus         4 LP~a~I~ri~k~~-----~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~~~DV~~Alk   66 (68)
T d1htaa_           4 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARK   66 (68)
T ss_dssp             SCHHHHHHHHHHT-----TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence            6788888888763     45689999999999999999999999999999999999999999998864

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=98.39  E-value=5.6e-08  Score=71.56  Aligned_cols=62  Identities=27%  Similarity=0.317  Sum_probs=54.2

Q ss_pred             ccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhh
Q psy2783         168 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPS  234 (340)
Q Consensus       168 Ipk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~  234 (340)
                      +|+.+..|++++    . .+.++..+|.++|++|+|.|+..|.++++.++.|++|-||.+.|+..+.
T Consensus         3 LP~a~I~rI~k~----~-~~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~~~Dv~~Al   64 (66)
T d1ku5a_           3 LPIAPVDRLIRK----A-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAI   64 (66)
T ss_dssp             SCHHHHHHHHHH----T-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred             CCHHHHHHHHHh----C-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence            466666676665    2 3569999999999999999999999999999999999999999998875

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.9e-06  Score=66.33  Aligned_cols=67  Identities=15%  Similarity=0.193  Sum_probs=57.5

Q ss_pred             hhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         166 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       166 lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      |++|++...|++++..   .++.++..+|..++++|+|.|+..|-+.|+.+|...+|-||.++|+.-+..
T Consensus         1 l~LP~a~v~ri~K~~~---p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~~~dv~~Al~   67 (87)
T d1n1ja_           1 IYLPIANVARIMKNAI---PQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS   67 (87)
T ss_dssp             CCCCHHHHHHHHHHTS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHHhC---CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Confidence            4667777777766543   357899999999999999999999999999999999999999999977654

>d1f1ea_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.77  E-value=3.2e-06  Score=71.31  Aligned_cols=60  Identities=17%  Similarity=0.030  Sum_probs=54.1

Q ss_pred             cchhhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          51 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        51 kst~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +..++++|+.+..|++++     ....|+..+|..+|++++|.|+..|+++++.+|.|+||.|..
T Consensus        74 ~~~~~~fp~a~IkRi~k~-----~g~~ris~dA~~~l~~~~E~fi~~l~~~A~~~a~~~kRkTI~  133 (151)
T d1f1ea_          74 DYDGELFGRATVRRILKR-----AGIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQ  133 (151)
T ss_dssp             TCCSCCCCHHHHHHHHHH-----TTCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             ccccCccCHHHHHHHHHc-----CCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            335889999999999985     256799999999999999999999999999999999999875

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=3.4e-05  Score=63.82  Aligned_cols=69  Identities=13%  Similarity=0.235  Sum_probs=61.7

Q ss_pred             hhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhhh
Q psy2783         165 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQWC  237 (340)
Q Consensus       165 ~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i~  237 (340)
                      ++.+|++...|++++..    ++.++..+|..+|++|+|.|+..|-..|+..+...+|-||.+.|+..+..-.
T Consensus         2 dl~LP~a~I~kI~K~~~----~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~~~Dv~~Al~~~   70 (135)
T d1jfib_           2 DLTIPRAAINKMIKETL----PNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESL   70 (135)
T ss_dssp             CCCCCHHHHHHHHHHHS----TTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred             cccccHHHHHHHHhhCC----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHc
Confidence            57888988888888865    3579999999999999999999999999999999999999999998876543

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.0001  Score=55.00  Aligned_cols=64  Identities=19%  Similarity=0.232  Sum_probs=55.5

Q ss_pred             CchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         171 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       171 ~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      +|-.|+ +.|+....+..++..+|..+++.|+|.|+..|-+.|+.++.-.+|-||+++|+..+..
T Consensus         1 LP~srV-krImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti~~~dl~~av~   64 (78)
T d1n1jb_           1 LPLARI-KKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAIT   64 (78)
T ss_dssp             CCHHHH-HHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHT
T ss_pred             CCHHHH-HHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHh
Confidence            355554 6777755566899999999999999999999999999999999999999999988754

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=97.21  E-value=3.8e-05  Score=58.82  Aligned_cols=63  Identities=22%  Similarity=0.251  Sum_probs=54.5

Q ss_pred             ccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         168 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       168 Ipk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      |||.+-.||++.    . .--|+..++.++|.+..|.||-.+..|+..+|-|++|-||+..|+.+++.
T Consensus        10 I~k~~i~Riar~----~-Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt~~DV~~Alk   72 (82)
T d2huec1          10 ITKPAIRRLARR----G-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALK   72 (82)
T ss_dssp             SCHHHHHHHHHH----T-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTT
T ss_pred             cCHHHHHHHHHH----c-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence            666665666553    2 33599999999999999999999999999999999999999999999976

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=9.4e-05  Score=53.89  Aligned_cols=63  Identities=14%  Similarity=0.192  Sum_probs=51.5

Q ss_pred             CCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchh
Q psy2783         170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWP  233 (340)
Q Consensus       170 k~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~  233 (340)
                      +.|-.| |+.|+..-.+.-++..+|..+|..|+|.|+..|.+.|+..+...+|-||.++|+..+
T Consensus         2 ~fP~sr-Vkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI~~~dl~~a   64 (66)
T d1jfia_           2 RFPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQC   64 (66)
T ss_dssp             CCCHHH-HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTT
T ss_pred             CCChHH-HHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHH
Confidence            345555 466777655667999999999999999999999999999999999999999999765

>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon Methanothermus fervidus, histone A [TaxId: 2180]

Probab=97.11  E-value=9.5e-05  Score=53.85  Aligned_cols=54  Identities=22%  Similarity=0.236  Sum_probs=47.4

Q ss_pred             hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +|+.+..|++++.     ...+.+.+|.++|++++|.|+..|.++++.++.|.||-|..
T Consensus         4 LP~a~I~ri~k~~-----~~~ris~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkTi~   57 (68)
T d1htaa_           4 LPIAPIGRIIKNA-----GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIK   57 (68)
T ss_dssp             SCHHHHHHHHHHT-----TCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCC
T ss_pred             CcHHHHHHHHHHC-----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            5777777877763     34689999999999999999999999999999999998874

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.01  E-value=0.00016  Score=55.49  Aligned_cols=64  Identities=19%  Similarity=0.180  Sum_probs=53.0

Q ss_pred             cCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         169 RKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       169 pk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      |.+.-.|++++..   .++..++.+|+.+++.|+|.|+-.|-+.|+.+|.-.+|-||.++|+.-+..
T Consensus         1 P~a~i~ri~K~~~---p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI~~~dv~~Al~   64 (89)
T d2bykb1           1 PNAVIGRLIKEAL---PESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLT   64 (89)
T ss_dssp             CCSHHHHHHHHHS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred             CccHHHHHHHHhC---cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence            3344455555443   357899999999999999999999999999999999999999999966654

>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Archaeal histone
domain: Archaeal histone
species: Archaeon (Pyrococcus horikoshii) [TaxId: 53953]

Probab=96.87  E-value=0.00019  Score=52.07  Aligned_cols=54  Identities=28%  Similarity=0.319  Sum_probs=45.5

Q ss_pred             hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      +|+.+..|++++    . .+.+...+|.++|++|+|.|+..|.++++.++.|.+|-|..
T Consensus         3 LP~a~I~rI~k~----~-~~~ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKTI~   56 (66)
T d1ku5a_           3 LPIAPVDRLIRK----A-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVK   56 (66)
T ss_dssp             SCHHHHHHHHHH----T-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEEC
T ss_pred             CCHHHHHHHHHh----C-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence            466666666664    2 34689999999999999999999999999999999998874

>d1q9ca_ a.22.1.3 (A:) Histone domain of Son of sevenless protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Histone domain of Son of sevenless protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.39  E-value=0.0028  Score=54.41  Aligned_cols=145  Identities=11%  Similarity=0.135  Sum_probs=99.0

Q ss_pred             cCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccccCCCCCCcchhhhhhhcCCCCCC
Q psy2783          59 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARKSTGGKAPRKQLATKAARKSAPAT  138 (340)
Q Consensus        59 k~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrKs~~~kAPRKqlAsk~~~ks~~~~  138 (340)
                      |.-|.--++.|..++.+++....+|++-+++    ++..||+-.-.|.-|..+              --..+.++.-   
T Consensus        15 ~g~f~~~i~KVl~qvhP~l~i~~~Al~~i~~----~i~~ll~~L~~~~p~sv~--------------dVe~~v~~~f---   73 (172)
T d1q9ca_          15 RGLLVPALKKVQGQVHPTLESNDDALQYVEE----LILQLLNMLCQAQPRSAS--------------DVEERVQKSF---   73 (172)
T ss_dssp             TTSSHHHHHHHHHHHCSSSBCCHHHHHHHHH----HHHHHHHHHHTTCCCSTT--------------HHHHHHHHSS---
T ss_pred             HHHHHHHHHHHHHHhCCCCCcCHHHHHHHHH----HHHHHHHHHHccCCccHH--------------HHHHHHHHhC---
Confidence            4568888899999999999999999988754    555666533222222111              0111111111   


Q ss_pred             CCCCCCCcCCCCch---hhHH----HHhhhhhhhhhccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhh
Q psy2783         139 GGVKKPHRYRPGTV---ALRE----IRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFE  211 (340)
Q Consensus       139 ~~~~~~~r~rpg~~---alrE----Ir~yQkst~lLIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFe  211 (340)
                                ||..   |+.|    |....+-..|.+|-.++.||.||..     ..|...+|-..|=.+-|.+...++|
T Consensus        74 ----------p~~i~~~ai~~a~~~~~srs~ragL~fPV~rv~rlLk~~~-----a~RVs~~A~vyLaavLEyl~aeILe  138 (172)
T d1q9ca_          74 ----------PHPIDKWAIADAQSAIEKRKRRNPLSLPVEKIHPLLKEVL-----GYKIDHQVSVYIVAVLEYISADILK  138 (172)
T ss_dssp             ----------CTTHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHH-----SSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------CchHHHHHHHHHHHHHhccccccCceecHHHHHHHHHhcc-----ccccccchHHHHHHHHHHHHHHHHH
Confidence                      2222   2222    3333334568999999999999862     4699999999999999999999999


Q ss_pred             chhhhhccCCceecCCCCcchhhhhhcc
Q psy2783         212 DTNLCAIHAKRVTIMPKDIHWPSQWCDN  239 (340)
Q Consensus       212 da~lca~HakRVTl~~kDm~L~~~i~~~  239 (340)
                      .|...+.|.+|.||+|+||+++.+=.++
T Consensus       139 lAgn~a~~~krkrItp~dI~lAi~nD~e  166 (172)
T d1q9ca_         139 LAGNYVRNIRHYEITKQDIKVAMCADKV  166 (172)
T ss_dssp             HHHHHHHHHTCSBCCHHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCceecHHHHHHHHhCCHH
Confidence            9999999999999999999999664333

>d1h3ob_ a.22.1.3 (B:) TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)-20, (TAF(II)-15, hTAF12), histone fold domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0027  Score=47.73  Aligned_cols=66  Identities=20%  Similarity=0.287  Sum_probs=57.0

Q ss_pred             hccCCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         167 LIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       167 LIpk~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      ++-|---+.||++|    ..+..+..++-+.|.+.|++|+.+..+.+..+|-|.+--||.++|++|.+.-
T Consensus         3 il~K~~L~eLv~~i----dp~~~ld~~vee~ll~iADdFV~~V~~~ac~lAKhR~s~~le~kDvql~LeR   68 (74)
T d1h3ob_           3 VLTKKKLQDLVREV----DPNEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER   68 (74)
T ss_dssp             SSCHHHHHHHHHHH----CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHh----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHh
Confidence            34444556777777    4567899999999999999999999999999999999999999999998764

>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit beta (Nf-Yb3)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0016  Score=49.49  Aligned_cols=58  Identities=10%  Similarity=0.150  Sum_probs=46.8

Q ss_pred             hhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          55 LLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        55 lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      |++|++...|++++..   ..+.+...+|..+++.|+|.|+..|-++++.++...+|-|..
T Consensus         1 l~LP~a~v~ri~K~~~---p~~~~is~ea~~~i~~a~e~Fi~~lt~~A~~~a~~~~rKTI~   58 (87)
T d1n1ja_           1 IYLPIANVARIMKNAI---PQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTIN   58 (87)
T ss_dssp             CCCCHHHHHHHHHHTS---CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred             CCCcHhHHHHHHHHhC---CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Confidence            3566666566665443   356899999999999999999999999999999999887763

>d1tafa_ a.22.1.3 (A:) TAF(II)42 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)42
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.38  E-value=0.015  Score=42.98  Aligned_cols=61  Identities=20%  Similarity=0.377  Sum_probs=53.6

Q ss_pred             hHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         174 QRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       174 ~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      .|++..|+.+.+ ---|+...+.-|=|=+=-|..++++||...+-||++-+|...|++|+..
T Consensus         4 a~~i~~iL~~~G-V~~yeprV~~qlLef~yRYtt~VL~DA~vys~HA~k~~id~dDVkLAi~   64 (68)
T d1tafa_           4 AQVIMSILKELN-VQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATE   64 (68)
T ss_dssp             HHHHHHHHHHTT-CCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHH
Confidence            467888888764 2368888999999999999999999999999999999999999999865

>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: TAF(II)62
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=94.24  E-value=0.015  Score=43.14  Aligned_cols=59  Identities=22%  Similarity=0.220  Sum_probs=50.5

Q ss_pred             HHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhh
Q psy2783         176 LVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       176 LVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~  235 (340)
                      -|+.|++..+ --....++..+|-+=+|.-|-.++++|..|+.|+||-+|+..||.-+++
T Consensus        11 sik~iAeS~G-i~~l~de~a~~LA~DveYRl~eiiQeA~KFMrhskR~~Ltt~Did~ALk   69 (70)
T d1tafb_          11 SMKVIAESIG-VGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK   69 (70)
T ss_dssp             HHHHHHHHTT-CCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred             HHHHHHHHcC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCcHHHHHHHHc
Confidence            3677777653 1147789999999999999999999999999999999999999988765

>d1jfib_ a.22.1.3 (B:) Negative cofactor 2, NC2, beta chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, beta chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.019  Score=46.71  Aligned_cols=58  Identities=10%  Similarity=0.236  Sum_probs=49.6

Q ss_pred             hhhhccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          54 ELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        54 ~lLIpk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      ++.+|++...|++++..    ++.+...+|..+|++|+|-|+..|-..++..+...+|-|..
T Consensus         2 dl~LP~a~I~kI~K~~~----~~~~is~dA~~~i~~a~~~Fi~~lt~~A~~~a~~~~RkTi~   59 (135)
T d1jfib_           2 DLTIPRAAINKMIKETL----PNVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTIS   59 (135)
T ss_dssp             CCCCCHHHHHHHHHHHS----TTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBC
T ss_pred             cccccHHHHHHHHhhCC----ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence            56788888888888765    35799999999999999999999999999998888877763

>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Nuclear transcription factor Y subunit gamma (Nf-Yc2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.84  E-value=0.084  Score=38.51  Aligned_cols=54  Identities=17%  Similarity=0.219  Sum_probs=43.6

Q ss_pred             CchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783          60 LPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR  114 (340)
Q Consensus        60 ~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr  114 (340)
                      +|..| |+.|+....+..+...+|..+++.|+|.|+..|-+.++.++.-.+|-|.
T Consensus         1 LP~sr-VkrImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~rkti   54 (78)
T d1n1jb_           1 LPLAR-IKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTL   54 (78)
T ss_dssp             CCHHH-HHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEE
T ss_pred             CCHHH-HHHHHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence            35555 4777775556689999999999999999999999999988877776554

>d1tzyb_ a.22.1.1 (B:) Histone H2B {Chicken (Gallus gallus), erythrocytes [TaxId: 9031]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H2B
species: Chicken (Gallus gallus), erythrocytes [TaxId: 9031]

Probab=89.48  E-value=0.17  Score=39.04  Aligned_cols=67  Identities=16%  Similarity=0.176  Sum_probs=56.6

Q ss_pred             CCchhHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHhhhchhhhhccCCceecCCCCcchhhhh
Q psy2783         170 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIHWPSQW  236 (340)
Q Consensus       170 k~pF~RLVrEI~~~~~~~~rfq~~Al~ALQeAaEa~Lv~lFeda~lca~HakRVTl~~kDm~L~~~i  236 (340)
                      +-.|.-.+..++.+...|..+...|+..+.--..++.-.+=++|..++-+.+|-||..+|||-+.++
T Consensus         2 ~esy~~Yi~kVLKqVhp~~giS~kam~imnsfvndiferIa~EA~~La~~~kr~TitsreIqtAvrL   68 (92)
T d1tzyb_           2 KESYSIYVYKVLKQVHPDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRL   68 (92)
T ss_dssp             CCCCHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHhhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence            3456666777777777899999999999888777777777778999999999999999999999876

>d2huec1 a.22.1.1 (C:20-101) Histone H4 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: Nucleosome core histones
domain: Histone H4
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=87.96  E-value=0.13  Score=38.43  Aligned_cols=54  Identities=22%  Similarity=0.213  Sum_probs=44.9

Q ss_pred             hccCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhccccccccccccccccc
Q psy2783          57 IRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTARK  115 (340)
Q Consensus        57 Ipk~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtrK  115 (340)
                      |++.+-.||++.    . .--|...++.++|.+..|.||-.+..|+..+|-|++|-|.+
T Consensus        10 I~k~~i~Riar~----~-Gv~ris~d~~~~l~~~l~~~l~~i~~~a~~~~~hakRKTvt   63 (82)
T d2huec1          10 ITKPAIRRLARR----G-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVT   63 (82)
T ss_dssp             SCHHHHHHHHHH----T-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred             cCHHHHHHHHHH----c-CcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCC
Confidence            566655555543    3 33599999999999999999999999999999999998874

>d2bykb1 a.22.1.3 (B:11-99) Chrac-14 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-14
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.87  E-value=0.2  Score=37.51  Aligned_cols=41  Identities=10%  Similarity=0.080  Sum_probs=34.4

Q ss_pred             ccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783          74 KTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR  114 (340)
Q Consensus        74 ~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr  114 (340)
                      ..+.....+|+.+++.|+|.|+-.|-+.++.++.-.+|-|.
T Consensus        14 p~~~~iskeA~~~i~~aae~FI~~lt~~A~~~a~~~~rKtI   54 (89)
T d2bykb1          14 PESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTI   54 (89)
T ss_dssp             CTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            45789999999999999999999999888887766665443

>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Negative cofactor 2, NC2, alpha chain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.17  E-value=0.27  Score=34.77  Aligned_cols=55  Identities=15%  Similarity=0.208  Sum_probs=42.5

Q ss_pred             cCchhHHHHHHHhhcccccccchHHHHHHHHHHHHHhhhhcccccccccccccccc
Q psy2783          59 KLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRTAR  114 (340)
Q Consensus        59 k~pF~RLVREI~~~~~~~~r~q~~Al~ALQeAaEayLv~LFEds~lcaiHakRvtr  114 (340)
                      ++|..| |+.|+..-.+.-+...+|...|..|+|.|+..|.+.++..+.-.+|-|.
T Consensus         2 ~fP~sr-Vkkimk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krktI   56 (66)
T d1jfia_           2 RFPPAR-IKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTM   56 (66)
T ss_dssp             CCCHHH-HHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CB
T ss_pred             CCChHH-HHHHHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence            345555 5677775555679999999999999999999999999988877776654

>d2byka1 a.22.1.3 (A:29-100) Chrac-16 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: Histone-fold
superfamily: Histone-fold
family: TBP-associated factors, TAFs
domain: Chrac-16
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=83.80  E-value=0.32  Score=35.22  Aligned_cols=47  Identities=4%  Similarity=0.006  Sum_probs=40.9

Q ss_pred             cccHHHHHHHHHHHHHHHHHhhhchhhhh-ccCCceecCCCCcchhhh
Q psy2783         189 RFQSSAVMALQEASEAYLVGLFEDTNLCA-IHAKRVTIMPKDIHWPSQ  235 (340)
Q Consensus       189 rfq~~Al~ALQeAaEa~Lv~lFeda~lca-~HakRVTl~~kDm~L~~~  235 (340)
                      ....+|+-++-.|+|-|+..|-+.|+.++ .+.++-||..+|+.-+..
T Consensus         9 ~is~ea~~lvskAtElFi~~L~~~a~~~a~~~~~~ktl~~~dl~~aV~   56 (72)
T d2byka1           9 LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVN   56 (72)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccccHHHHHHHHc
Confidence            57789999999999999999999998887 577778999999976643