Psyllid ID: psy2792

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MTIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNKSPPTHQGGTVVVCNKSDLCRSRVLKRRQFLATPATSL
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHccccccccccccccHHHccccccccccccccccccccEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHccccEEEEEEEcccHHHHHHHccHHHHHHHHHccccccEEEEEEcHHHHHHccccHHHHHHHHHHHcccEEEEcHHHHHcHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mtigltegTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLqrhravnnvPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHevsvadnspAIYQAFDHLltesrggppsgihKIRKFSVTKMLGtliggsnksppthqggtvvvcnksdlcrSRVLKRRqflatpatsl
Flexible Loop (DISEMBL)
MTIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGgsnksppthqggtVVVCNKSDLcrsrvlkrrqflatpatsl
Low Complexity Region (SEG)
MTIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNKSPPTHQGGTVVVCNKSDLCRSRVLKRRQFLATPATSL
Disordered region (IsUnstruct)
****LTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE*******GIHKIRKFSVTKMLGTLIG***********GTVVVCNKSDLCRSRVLKRR**********
Disordered Region (DISOPRED)
MTIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLT********************************************************************
Disordered Region (DISEMBL)
MTIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNKSPPTHQGGTVVVCNKSDLCRSRVLKRRQFLATPATSL
Disordered Region (DISPRO)
****LTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP*******************************************CRSRVLK************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNKSPPTHQGGTVVVCNKSDLCRSRVLKRRQFLATPATSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q5E9J3	248	Ras-like protein family m	yes	N/A	0.658	0.459	0.382	4e-15
Q9BPW5	248	Ras-like protein family m	yes	N/A	0.658	0.459	0.373	4e-14
Q922H7	247	Ras-like protein family m	yes	N/A	0.658	0.461	0.373	5e-14
Q5FVY2	247	Ras-like protein family m	yes	N/A	0.658	0.461	0.368	7e-14
Q8AVS6	248	Ras-like protein family m	N/A	N/A	0.635	0.443	0.372	8e-14
Q6IMA7	247	Ras-like protein family m	yes	N/A	0.560	0.392	0.391	8e-14
Q6P0U3	244	Ras-like protein family m	no	N/A	0.520	0.368	0.366	3e-12
O88667	308	GTP-binding protein RAD O	no	N/A	0.439	0.246	0.392	6e-10
O08989	208	Ras-related protein M-Ras	no	N/A	0.554	0.461	0.364	8e-10
P97538	208	Ras-related protein M-Ras	no	N/A	0.554	0.461	0.364	9e-10

>sp|Q5E9J3|RSLBB_BOVIN Ras-like protein family member 11B OS=Bos taurus GN=RASL11B PE=2 SV=1

 Score = 80.9 bits (198), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 44/115 (38%), Positives = 67/115 (58%), Gaps = 1/115 (0%)

Query: 10  LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69
           L   I WAD  +IV+S+ D +S++      Q++Q+      +PV+++ANK DL H++QVD
Sbjct: 104 LNRCIRWADAVVIVFSITDYKSYELTSQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVD 163

Query: 70  ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE-SRGGPPSGIHKIRKFSV 123
             LG   A    C+F+EVSV++N   +Y AF  L  E S    PSG  + R+ S+
Sbjct: 164 PQLGLQLASMLGCSFYEVSVSENDNDVYNAFHVLCKEVSHKQQPSGTPEKRRTSL 218

Bos taurus (taxid: 9913)

>sp|Q9BPW5|RSLBB_HUMAN Ras-like protein family member 11B OS=Homo sapiens GN=RASL11B PE=2 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 10  LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69
           L   I WAD  +IV+S+ D +S++      Q++Q+      +PV+++ANK DL H++QVD
Sbjct: 104 LNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVD 163

Query: 70  ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE-SRGGPPSGIHKIRKFSV 123
             LG   A    C+F+EVSV++N   +Y AF  L  E S    PS   + R+ S+
Sbjct: 164 PQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSL 218

Homo sapiens (taxid: 9606)

>sp|Q922H7|RSLBB_MOUSE Ras-like protein family member 11B OS=Mus musculus GN=Rasl11b PE=2 SV=1

 Score = 77.4 bits (189), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 1/115 (0%)

Query: 10  LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69
           L   I WAD  ++V+S+ D +S++      Q++Q+      +PV+L+ANK DL H++QVD
Sbjct: 103 LNRCIRWADAVVLVFSITDHKSYELISQLHQHVQQLHPGTRLPVVLVANKADLLHVKQVD 162

Query: 70  ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE-SRGGPPSGIHKIRKFSV 123
             LG   A    C+F+EVSV++N   +Y AF  L  E S    PS   + R+ S+
Sbjct: 163 PQLGLQLASMLGCSFYEVSVSENYNDVYNAFHVLCKEVSPKQQPSSTPEKRRTSL 217

Mus musculus (taxid: 10090)

>sp|Q5FVY2|RSLBB_XENTR Ras-like protein family member 11B OS=Xenopus tropicalis GN=rasl11b PE=2 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/114 (36%), Positives = 64/114 (56%)

Query: 10  LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69
           L   + WAD  +IV+S+ D +SFD      Q+ ++    N +P++++ANK DL HL+QV+
Sbjct: 104 LNKSLRWADAVVIVFSITDCKSFDLISRLHQHARQLHPDNRIPIVIVANKADLLHLKQVE 163

Query: 70  ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSV 123
              G   A    CTF+EVSV++N   +Y AF  L  E      +G  + RK S+
Sbjct: 164 PQHGLQLANMLGCTFYEVSVSENYIDVYNAFQVLCKEISKQQNTGTPERRKNSL 217

Xenopus tropicalis (taxid: 8364)

>sp|Q8AVS6|RSLBB_XENLA Ras-like protein family member 11B OS=Xenopus laevis GN=rasl11b PE=2 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 44/118 (37%), Positives = 65/118 (55%), Gaps = 8/118 (6%)

Query: 10  LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH----RAVNNVPVMLLANKLDLEHL 65
           L   + WAD  +IV+S+ D +SFD     + +L RH       N +P++++ANK DL HL
Sbjct: 105 LNKSLRWADAVVIVFSITDCKSFDL----ISHLHRHARQLHPDNRIPIVIVANKADLLHL 160

Query: 66  RQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSV 123
           +QV+   G   A    CTF+EVSV++N   +Y AF  L  E      +G  + RK S+
Sbjct: 161 KQVEPQHGLQLANMLGCTFYEVSVSENYNDVYNAFQVLCKEISKQQNTGTSERRKNSI 218

Xenopus laevis (taxid: 8355)

>sp|Q6IMA7|RSLBB_RAT Ras-like protein family member 11B OS=Rattus norvegicus GN=Rasl11b PE=2 SV=1

 Score = 76.6 bits (187), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 38/97 (39%), Positives = 58/97 (59%)

Query: 10  LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69
           L   I WAD  +IV+S+ D +S++      Q++Q+      +PV+++ANK DL H++QVD
Sbjct: 103 LNRCIRWADAVVIVFSITDHKSYELISQLHQHVQQLHPGTRLPVVVVANKADLLHVKQVD 162

Query: 70  ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
             LG   A    C+F+EVSV++N   +Y AF  L  E
Sbjct: 163 PQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKE 199

Rattus norvegicus (taxid: 10116)

>sp|Q6P0U3|RSLBB_DANRE Ras-like protein family member 11B OS=Danio rerio GN=rasl11b PE=2 SV=1

 Score = 71.2 bits (173), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 56/90 (62%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
           I WAD  ++VYS+ D++SFD      Q + R  +  ++P++L+ANK DL H+R+VD   G
Sbjct: 98  IQWADAVVMVYSVTDRKSFDLIGQLHQLVTRTHSDRSIPIILVANKADLLHVRRVDAQEG 157

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHL 103
              +   +C+F+EVS +++   ++ AF  L
Sbjct: 158 PVLSSALSCSFYEVSASEDYNQVHSAFHRL 187

Danio rerio (taxid: 7955)

>sp|O88667|RAD_MOUSE GTP-binding protein RAD OS=Mus musculus GN=Rrad PE=1 SV=1

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 8/84 (9%)

Query: 15  CW--------ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR 66
           CW         D  +IVYS+ DK SF+ A      L+R R  ++VP++L+ NK DL   R
Sbjct: 152 CWLPGHCMAMGDAYVIVYSITDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSR 211

Query: 67  QVDESLGRSTAVKYNCTFHEVSVA 90
           +V    GR+ AV ++C F E S A
Sbjct: 212 EVSVDEGRACAVVFDCKFIETSAA 235

May play an important role in cardiac antiarrhythmia via the strong suppression of voltage-gated L-type Ca(2+) currents. Regulates voltage-dependent L-type calcium channel subunit alpha-1C trafficking to the cell membrane. Inhibits cardiac hypertrophy through the calmodulin-dependent kinase II (CaMKII) pathway. Inhibits phosphorylation and activation of CAMK2D.

Mus musculus (taxid: 10090)

>sp|O08989|RASM_MOUSE Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1

 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 52/96 (54%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           DG +IVYS+ DK SF++     Q + R +   + P++L+ANK+DL HLR+V    G+  A
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 145

Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113
            KYN  + E S  D    + + F  L+   R   P 
Sbjct: 146 TKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPE 181

May serve as an important signal transducer for a novel upstream stimuli in controlling cell proliferation. Weakly activates the MAP kinase pathway.

Mus musculus (taxid: 10090)

>sp|P97538|RASM_RAT Ras-related protein M-Ras OS=Rattus norvegicus GN=Mras PE=1 SV=2

 Score = 63.2 bits (152), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 52/96 (54%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           DG +IVYS+ DK SF++     Q + R +   + P++L+ANK+DL HLR+V    G+  A
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 145

Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS 113
            KYN  + E S  D    + + F  L+   R   P 
Sbjct: 146 TKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQVPE 181

May serve as an important signal transducer for a novel upstream stimuli in controlling cell proliferation. Weakly activates the MAP kinase pathway.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
189237781	234	PREDICTED: similar to MRAS2, putative [T	0.884	0.653	0.543	5e-40
157124961	218	MRAS2, putative [Aedes aegypti] gi|10888	0.867	0.688	0.509	1e-32
158299675	190	AGAP008989-PA [Anopheles gambiae str. PE	0.624	0.568	0.508	6e-23
357610390	233	putative MRAS2 [Danaus plexippus]	0.774	0.575	0.421	1e-22
241709249	197	conserved hypothetical protein [Ixodes s	0.751	0.659	0.370	3e-17
241155349	199	conserved hypothetical protein [Ixodes s	0.745	0.648	0.377	4e-17
405962620	221	Ras-related and estrogen-regulated growt	0.682	0.533	0.401	4e-15
157129554	211	MRAS2, putative [Aedes aegypti] gi|10887	0.745	0.611	0.338	9e-15
170034686	205	MRAS2 [Culex quinquefasciatus] gi|167876	0.745	0.629	0.338	1e-14
170051496	106	MRAS2 [Culex quinquefasciatus] gi|167872	0.520	0.849	0.515	1e-14

>gi|189237781|ref|XP_972376.2| PREDICTED: similar to MRAS2, putative [Tribolium castaneum] gi|270006779|gb|EFA03227.1| hypothetical protein TcasGA2_TC013156 [Tribolium castaneum]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 113/160 (70%), Gaps = 7/160 (4%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
           I WAD C++VY + ++ S  +A   LQ + + R+   +P++LL NK DLEHLRQVDE  G
Sbjct: 78  IYWADACVVVYDITNRTSMTHAAELLQRVLQLRS--QMPIVLLGNKADLEHLRQVDEVEG 135

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGG 133
           R+ A+++N  FHEVSVA+NSPAIY A D +L E R        K RKFSV+KM+GTLIG 
Sbjct: 136 RTLAIQHNSQFHEVSVAENSPAIYTAIDSVLNECRS--VQNTQKTRKFSVSKMIGTLIGN 193

Query: 134 SNKS--PPTHQGGTVVVCNKSDLCRSRVLKRRQ-FLATPA 170
           +N    P T+QGGTVVVC+KSDL +SRVL+RRQ F AT +
Sbjct: 194 ANGKVVPNTNQGGTVVVCHKSDLYKSRVLRRRQNFTATAS 233

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124961|ref|XP_001654184.1| MRAS2, putative [Aedes aegypti] gi|108882713|gb|EAT46938.1| AAEL001901-PA [Aedes aegypti]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 82/161 (50%), Positives = 106/161 (65%), Gaps = 11/161 (6%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDESL 72
           I WAD C+IVYS+ D+ S++YA  +L  L   R + N P   L+ NK DL+HLR+V E+ 
Sbjct: 64  IQWADACLIVYSITDRASYEYAQRSLGEL---RQLQNSPSAYLIGNKADLDHLREVQETE 120

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIG 132
           G + A  +   F EVSVADNSPA+Y+AF+ LL ESR  P     K RKFSV+KM GTLIG
Sbjct: 121 GATLAASHAIGFCEVSVADNSPALYKAFERLLIESRARPV----KPRKFSVSKMFGTLIG 176

Query: 133 --GSNKSPPTHQGGTVVVCNKSDLCRSRVLKRRQ-FLATPA 170
             G+ +   T   GTVV C+K +L +SRV+KRRQ F AT +
Sbjct: 177 NNGTRQPSTTVSQGTVVPCHKGELHKSRVMKRRQAFTATAS 217

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158299675|ref|XP_319739.3| AGAP008989-PA [Anopheles gambiae str. PEST] gi|157013631|gb|EAA15139.3| AGAP008989-PA [Anopheles gambiae str. PEST]

 Score =  112 bits (280), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 59/116 (50%), Positives = 76/116 (65%), Gaps = 8/116 (6%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDESL 72
           I WAD C+IVYS+ D+ S++YA  +L  L   R + N P   L+ NK DL+HLR+V E+ 
Sbjct: 82  IQWADACLIVYSITDRASYEYAQRSLAEL---RQLQNAPSAYLVGNKADLDHLREVSETE 138

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLG 128
           G S A  +   F EVSVADN+PA+Y+AF+ LL ESR  P     K RKFSV+KM G
Sbjct: 139 GASLAASHAIGFCEVSVADNTPALYKAFERLLVESRARPV----KPRKFSVSKMFG 190

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357610390|gb|EHJ66959.1| putative MRAS2 [Danaus plexippus]

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 18/152 (11%)

Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQR----------HRAVNNVPVMLLANKL 60
           T  I WAD C++VYS+ D+ SF+YA   L  L++            A   +P+ LL NK 
Sbjct: 75  TEQIQWADACLLVYSVTDRSSFEYATDILNTLKKTPVNGSPAHGAAATTCMPLALLGNKT 134

Query: 61  DLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRK 120
           DL+HLRQV    G++ +  +  +F E SVADNS  +Y+  D LLTE R        + RK
Sbjct: 135 DLDHLRQVPTKEGQAMSTLHGASFSEASVADNSGDLYRCVDRLLTEVRMP-----QRTRK 189

Query: 121 FSVTKMLGTLIGG-SNKSPPTHQGGTVVVCNK 151
           FSVTKMLG+LIGG +N +  T   G++V C +
Sbjct: 190 FSVTKMLGSLIGGTTNNNQATR--GSMVACPR 219

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241709249|ref|XP_002403390.1| conserved hypothetical protein [Ixodes scapularis] gi|215505063|gb|EEC14557.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 93.2 bits (230), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 50/135 (37%), Positives = 75/135 (55%), Gaps = 5/135 (3%)

Query: 8   GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ 67
           G L   I WAD  ++VY + ++ SFD A + L+ L   R   + P++LL NK DLEH RQ
Sbjct: 51  GCLYDHITWADAFVLVYDICERASFDQARALLETLVALRGARSAPMILLGNKRDLEHCRQ 110

Query: 68  VDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRK-----FS 122
           V    G   ++ ++C F+EVS A+N   +  AF  L+ E+R         IR+      +
Sbjct: 111 VGVDDGHEASLHFHCQFYEVSAAENYVGVSLAFQSLIRETRALQALKTLPIRRKAGAAMT 170

Query: 123 VTKMLGTLIGGSNKS 137
           V+KM+G + G S+KS
Sbjct: 171 VSKMIGMVFGKSHKS 185

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241155349|ref|XP_002407520.1| conserved hypothetical protein [Ixodes scapularis] gi|215494129|gb|EEC03770.1| conserved hypothetical protein [Ixodes scapularis]

 Score = 92.8 bits (229), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 6/135 (4%)

Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           T  + WA+  +++YS+ ++ SF  AV  ++ ++R    + VPV+LL NKLDLEH RQV  
Sbjct: 51  TDQMRWAEAFVVIYSICNRTSFQQAVDYIEAVRRLHTPSYVPVLLLGNKLDLEHCRQVSV 110

Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG-GPPSGIHKIRKFS---VTKM 126
              +    +Y C F+EVS AD    + QAF + L E+R       + + RK S   V+K+
Sbjct: 111 DDAQDLCARYGCQFYEVSAADGCAGVEQAFHNFLREARTLYFHRSLPRTRKLSIVAVSKV 170

Query: 127 LGTLIGGSNK--SPP 139
            G + GG  K  SPP
Sbjct: 171 FGAMFGGRGKMASPP 185

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405962620|gb|EKC28278.1| Ras-related and estrogen-regulated growth inhibitor-like protein [Crassostrea gigas]

 Score = 86.3 bits (212), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 4/122 (3%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
           WAD  +IVYS+ D  SF+ A S L  + + R+ + +PV+LL NK DLEH R V    G  
Sbjct: 77  WADAFVIVYSICDTCSFERAKSLLDTIGKVRSNSYIPVLLLGNKTDLEHRRTVGVEEGHQ 136

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR-GGPPSGIHKIRKFS---VTKMLGTLI 131
            A++YNC ++EVS A+N   I  AF  LL +++       + K R+ S   V+K LG + 
Sbjct: 137 VALEYNCQYYEVSAAENYVTINIAFQALLRDAKMNQQQKSMLKRRRTSLVNVSKKLGAMF 196

Query: 132 GG 133
            G
Sbjct: 197 SG 198

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|157129554|ref|XP_001661722.1| MRAS2, putative [Aedes aegypti] gi|108872157|gb|EAT36382.1| AAEL011522-PA [Aedes aegypti]

 Score = 85.1 bits (209), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 8   GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ 67
           G L   + W D  ++VYS+ DK SF+ A   LQ L + +  +   ++LL NK DL+H R+
Sbjct: 68  GCLYEHLRWGDAFVVVYSICDKASFEEAADYLQQLTKLKLPSYYTILLLGNKSDLDHARE 127

Query: 68  VDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKF----SV 123
           +  + G+  + +Y+C F+EVS A+N   +  AF  L+ E+R         +R+     SV
Sbjct: 128 ISVNDGQELSFRYSCQFYEVSAAENFAGVSLAFQSLIREARSTQLFRALPLRRKLGVNSV 187

Query: 124 TKMLGTLIGGSNK 136
           +K LG + G ++K
Sbjct: 188 SKALGNIFGKNSK 200

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170034686|ref|XP_001845204.1| MRAS2 [Culex quinquefasciatus] gi|167876075|gb|EDS39458.1| MRAS2 [Culex quinquefasciatus]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/133 (33%), Positives = 74/133 (55%), Gaps = 4/133 (3%)

Query: 8   GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ 67
           G L   + W D  ++VYS+ DK SF+ A   LQ L + +  +   ++LL NK DL+H R+
Sbjct: 62  GCLYEHLRWGDAFVVVYSICDKASFEEAADYLQQLTKLKLPSYYTILLLGNKSDLDHARE 121

Query: 68  VDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKF----SV 123
           +  + G+  + +Y+C F+EVS A+N   +  AF  L+ E+R         +R+     SV
Sbjct: 122 ISVNDGQELSFRYSCQFYEVSAAENFAGVSLAFQSLIREARSTQLFRALPLRRKLGVNSV 181

Query: 124 TKMLGTLIGGSNK 136
           +K LG + G ++K
Sbjct: 182 SKALGNIFGKNSK 194

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170051496|ref|XP_001861789.1| MRAS2 [Culex quinquefasciatus] gi|167872726|gb|EDS36109.1| MRAS2 [Culex quinquefasciatus]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 64/99 (64%), Gaps = 9/99 (9%)

Query: 67  QVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKM 126
           QV E+ G + A  +   F EVSVADNSP++Y+AF+ LL ESR  P     K RKFSV+KM
Sbjct: 7   QVQETEGATLAASHAIGFCEVSVADNSPSLYKAFERLLAESRARPV----KPRKFSVSKM 62

Query: 127 LGTLIG--GSNKSPPTHQGGTVVVCNKSDLCRSRVLKRR 163
            GTLIG  G+ +S  T   GTVV C+K +L +   LKRR
Sbjct: 63  FGTLIGNNGTRQSAATTVSGTVVPCHKGELHK---LKRR 98

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
UNIPROTKB|Q5E9J3	248	RASL11B "Ras-like protein fami	0.693	0.483	0.377	4.7e-16
UNIPROTKB|E2RKP8	209	RASL11B "Uncharacterized prote	0.618	0.511	0.398	5.4e-15
UNIPROTKB|Q9BPW5	248	RASL11B "Ras-like protein fami	0.658	0.459	0.373	5.4e-15
UNIPROTKB|F1SE66	248	RASL11B "Uncharacterized prote	0.693	0.483	0.368	5.4e-15
MGI|MGI:1916189	247	Rasl11b "RAS-like, family 11,	0.658	0.461	0.373	6.9e-15
RGD|1303099	247	Rasl11b "RAS-like family 11 me	0.658	0.461	0.373	1.4e-14
FB|FBgn0035711	207	CG8519 [Drosophila melanogaste	0.514	0.429	0.393	7.9e-14
ZFIN|ZDB-GENE-050522-487	211	zgc:110699 "zgc:110699" [Danio	0.606	0.497	0.364	1.3e-13
UNIPROTKB|F1NBW1	217	RASL12 "Uncharacterized protei	0.537	0.428	0.389	7.1e-13
ZFIN|ZDB-GENE-040426-793	244	rasl11b "RAS-like, family 11,	0.537	0.381	0.354	9.1e-13

UNIPROTKB|Q5E9J3 RASL11B "Ras-like protein family member 11B" [Bos taurus (taxid:9913)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 46/122 (37%), Positives = 70/122 (57%)

Query:     3 IGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
             +  TE  L   I WAD  +IV+S+ D +S++      Q++Q+      +PV+++ANK DL
Sbjct:    98 LSCTE-QLNRCIRWADAVVIVFSITDYKSYELTSQLHQHVQQLHLGTRLPVVVVANKADL 156

Query:    63 EHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE-SRGGPPSGIHKIRKF 121
              H++QVD  LG   A    C+F+EVSV++N   +Y AF  L  E S    PSG  + R+ 
Sbjct:   157 LHIKQVDPQLGLQLASMLGCSFYEVSVSENDNDVYNAFHVLCKEVSHKQQPSGTPEKRRT 216

Query:   122 SV 123
             S+
Sbjct:   217 SL 218

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|E2RKP8 RASL11B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 43/108 (39%), Positives = 64/108 (59%)

Query:     4 GLTEGT-LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
             GL+ G  L   I WAD  +IV+S+ D +S++      Q++Q+      +PV+++ANK DL
Sbjct:   101 GLSCGEQLNRCIRWADAVVIVFSITDYKSYELIGQLHQHVQQLHLGTRLPVVVVANKADL 160

Query:    63 EHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG 110
              H++QVD  LG   A    C+F+EVSV++N   +Y AF  L  ES  G
Sbjct:   161 LHVKQVDPQLGLQLASVLGCSFYEVSVSENYNDVYSAFHVLCKESPTG 208

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q9BPW5 RASL11B "Ras-like protein family member 11B" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 43/115 (37%), Positives = 66/115 (57%)

Query:    10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69
             L   I WAD  +IV+S+ D +S++      Q++Q+      +PV+++ANK DL H++QVD
Sbjct:   104 LNRCIRWADAVVIVFSITDYKSYELISQLHQHVQQLHLGTRLPVVVVANKADLLHIKQVD 163

Query:    70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE-SRGGPPSGIHKIRKFSV 123
               LG   A    C+F+EVSV++N   +Y AF  L  E S    PS   + R+ S+
Sbjct:   164 PQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSHKQQPSSTPEKRRTSL 218

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1SE66 RASL11B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 45/122 (36%), Positives = 69/122 (56%)

Query:     3 IGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
             +  TE  L   I WAD  +IV+S+ D +S++      Q++Q+      +PV+++ANK DL
Sbjct:    98 LSCTE-QLNRCIRWADAVVIVFSVTDYKSYELTGQLHQHVQQLHLGARLPVVVVANKADL 156

Query:    63 EHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE-SRGGPPSGIHKIRKF 121
              H++QVD  LG   A    C+F+EVSV++N   +Y AF  L  E S    PS   + R+ 
Sbjct:   157 LHIKQVDPQLGLQLASMLGCSFYEVSVSENDNDVYNAFHVLCKEVSHKQQPSSTPEKRRT 216

Query:   122 SV 123
             S+
Sbjct:   217 SL 218

GO:0005525 "GTP binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

MGI|MGI:1916189 Rasl11b "RAS-like, family 11, member B" [Mus musculus (taxid:10090)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 43/115 (37%), Positives = 66/115 (57%)

Query:    10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69
             L   I WAD  ++V+S+ D +S++      Q++Q+      +PV+L+ANK DL H++QVD
Sbjct:   103 LNRCIRWADAVVLVFSITDHKSYELISQLHQHVQQLHPGTRLPVVLVANKADLLHVKQVD 162

Query:    70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE-SRGGPPSGIHKIRKFSV 123
               LG   A    C+F+EVSV++N   +Y AF  L  E S    PS   + R+ S+
Sbjct:   163 PQLGLQLASMLGCSFYEVSVSENYNDVYNAFHVLCKEVSPKQQPSSTPEKRRTSL 217

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

RGD|1303099 Rasl11b "RAS-like family 11 member B" [Rattus norvegicus (taxid:10116)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 43/115 (37%), Positives = 66/115 (57%)

Query:    10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD 69
             L   I WAD  +IV+S+ D +S++      Q++Q+      +PV+++ANK DL H++QVD
Sbjct:   103 LNRCIRWADAVVIVFSITDHKSYELISQLHQHVQQLHPGTRLPVVVVANKADLLHVKQVD 162

Query:    70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE-SRGGPPSGIHKIRKFSV 123
               LG   A    C+F+EVSV++N   +Y AF  L  E S     SG  + R+ S+
Sbjct:   163 PQLGLQLASMLGCSFYEVSVSENYNDVYSAFHVLCKEVSPKQQASGTPEKRRTSL 217

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

FB|FBgn0035711 CG8519 [Drosophila melanogaster (taxid:7227)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 37/94 (39%), Positives = 55/94 (58%)

Query:    13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
             ++ WADG ++VYS+ D++SF+Y      +LQ     ++ PV L ANK+D+ HLRQV    
Sbjct:    84 LVQWADGLLLVYSITDRKSFNYIRRAKSDLQ-----SDTPVQLCANKVDMVHLRQVSRDE 138

Query:    73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
             G   A  + C F EVS AD+   + + F+ L  E
Sbjct:   139 GEILAKDFECKFSEVSAADHVDQVAEVFNELCKE 172

GO:0003924 "GTPase activity" evidence=ISS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-050522-487 zgc:110699 "zgc:110699" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 39/107 (36%), Positives = 65/107 (60%)

Query:     3 IGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRH-RAVNNVPVMLLANKLD 61
             +G    +L + I W DG +I+YS+ D+ SF+ AVS L+ L  H +    +P +++ANK D
Sbjct:    71 VGAAASSLESSIKWGDGFLIMYSVTDRSSFE-AVSRLKRLIDHVKQTLGIPTVVVANKCD 129

Query:    62 LEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
             +E+ R V    G++ A    C+F E+SVA+++ ++  AF  L+ E R
Sbjct:   130 MENGRVVRTDEGQALASDLRCSFFELSVAEDASSVEAAFGQLVREVR 176

GO:0005525 "GTP binding" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1NBW1 RASL12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 37/95 (38%), Positives = 52/95 (54%)

Query:    16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLRQVDESLG 73
             WA+  ++VYS+ D+ SF+     L  L RH        PV+LL NKLD+E  RQV ++ G
Sbjct:   100 WANAFLVVYSIDDRRSFEGCGRYLDILARHARGCQRQSPVLLLGNKLDMEQYRQVTKAEG 159

Query:    74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
              S A K+ C F+EVS   +  A+   F   + E R
Sbjct:   160 MSLATKFGCLFYEVSACQDFAAVQHVFHQAVRELR 194

GO:0003924 "GTPase activity" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

ZFIN|ZDB-GENE-040426-793 rasl11b "RAS-like, family 11, member B" [Danio rerio (taxid:7955)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 33/93 (35%), Positives = 57/93 (61%)

Query:    14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
             I WAD  ++VYS+ D++SFD      Q + R  +  ++P++L+ANK DL H+R+VD   G
Sbjct:    98 IQWADAVVMVYSVTDRKSFDLIGQLHQLVTRTHSDRSIPIILVANKADLLHVRRVDAQEG 157

Query:    74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
                +   +C+F+EVS +++   ++ AF  L  +
Sbjct:   158 PVLSSALSCSFYEVSASEDYNQVHSAFHRLCVD 190

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0048382 "mesendoderm development" evidence=IGI

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	5e-26
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	5e-19
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	6e-19
pfam00071	162	pfam00071, Ras, Ras family	1e-18
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	1e-17
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-17
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-16
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-14
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	7e-14
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-13
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	9e-13
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-12
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	2e-12
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-12
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	9e-11
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	9e-11
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	2e-10
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	2e-10
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	3e-10
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	2e-09
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	2e-09
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	7e-09
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	8e-09
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-08
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-08
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	2e-08
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	7e-08
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	8e-08
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	1e-07
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	4e-07
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-07
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	2e-06
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	2e-06
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	3e-06
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	5e-06
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	6e-06
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	7e-06
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	1e-05
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-05
pfam08477	116	pfam08477, Miro, Miro-like protein	4e-05
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	8e-05
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	8e-05
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	1e-04
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	1e-04
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	4e-04
cd04103	158	cd04103, Centaurin_gamma, Centaurin gamma (CENTG)	5e-04
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	0.001
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	0.001
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	0.002
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	0.002
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	0.002
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	0.004
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	0.004
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	0.004

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 97.0 bits (242), Expect = 5e-26
 Identities = 37/94 (39%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQR-HRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
           WADG ++VYS+ D+ SFD     LQ ++   +    +PV+L+ NK DL H RQV    G+
Sbjct: 72  WADGFVLVYSITDRSSFDVVSQLLQLIREIKKRDGEIPVILVGNKADLLHSRQVSTEEGQ 131

Query: 75  STAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
             A++  C F EVS A+N   +   F  L  E R
Sbjct: 132 KLALELGCLFFEVSAAENYLEVQNVFHELCREVR 165

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 78.7 bits (195), Expect = 5e-19
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 2/87 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + ++ESF+     L  L+ + A  N+P++L+ NK DLE  RQV     +  
Sbjct: 73  AHGAILVYDVTNRESFENLDKWLNELKEY-APPNIPIILVGNKSDLEDERQVSTEEAQQF 131

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHL 103
           A +    F E S       + +AF+ L
Sbjct: 132 AKENGLLFFETSAKTGE-NVDEAFESL 157

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 78.3 bits (194), Expect = 6e-19
 Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY + ++ESF+   + L+ L+ + A  NV +ML+ NK DLE  RQV      + 
Sbjct: 73  AVGALLVYDITNRESFENLENWLKELREY-ASPNVVIMLVGNKSDLEEQRQVSREEAEAF 131

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A ++   F E S   N+  + +AF+ L  E
Sbjct: 132 AEEHGLPFFETSAKTNT-NVEEAFEELARE 160

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 77.9 bits (193), Expect = 1e-18
 Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  ++SF+     L+ + RH A  NVP++L+ NK DLE  R V    G + 
Sbjct: 72  AQGFLLVYDITSRDSFENVKKWLEEILRH-ADENVPIVLVGNKCDLEDQRVVSTEEGEAL 130

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F E S A  +  + +AF+ L  E
Sbjct: 131 AKELGLPFMETS-AKTNENVEEAFEELARE 159

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 74.9 bits (185), Expect = 1e-17
 Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
           I   DG I+VYS+  +ESF+   +  + + R +   +VP++L+ NK DLE+ RQV    G
Sbjct: 68  IRNGDGFILVYSITSRESFEEIKNIREQILRVKDKEDVPIVLVGNKCDLENERQVSTEEG 127

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            + A ++ C F E S   N   I + F+ L+ E
Sbjct: 128 EALAEEWGCPFLETSAKTNIN-IDELFNTLVRE 159

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 75.3 bits (186), Expect = 1e-17
 Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 3/92 (3%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQN-LQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           +G ++VYS+ D++SF+  ++  +  + R +  ++VP++L+ NK DLE+ R V    G+  
Sbjct: 75  EGFLLVYSITDRQSFE-EIAKFREQILRVKDRDDVPIVLVGNKCDLENERVVSTEEGKEL 133

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           A ++ C F E S A     + +AF  L+ E R
Sbjct: 134 ARQWGCPFLETS-AKERINVDEAFYDLVREIR 164

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 72.2 bits (178), Expect = 2e-16
 Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 3/92 (3%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQN-LQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           +G ++VYS+ D++SF+  +   +  + R +  ++VP++L+ NK DLE  R V    G+  
Sbjct: 73  EGFLLVYSITDRQSFE-EIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKEL 131

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           A ++ C F E S A     + +AF  L+ E R
Sbjct: 132 ARQWGCPFLETS-AKERVNVDEAFYDLVREIR 162

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 68.2 bits (167), Expect = 2e-14
 Identities = 29/74 (39%), Positives = 43/74 (58%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ D+ SF+ A      L+R R   ++P++L+ NK DL   R+V    GR+ 
Sbjct: 73  GDAYVIVYSVTDRSSFEKASELRIQLRRARQAEDIPIILVGNKSDLVRSREVSVQEGRAC 132

Query: 77  AVKYNCTFHEVSVA 90
           AV ++C F E S A
Sbjct: 133 AVVFDCKFIETSAA 146

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 65.6 bits (160), Expect = 7e-14
 Identities = 30/73 (41%), Positives = 44/73 (60%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G II YS+ D+ SF  A    + + R R   ++P++L+ NK+DLE  RQV    GR+ A
Sbjct: 75  EGFIICYSVTDRHSFQEASEFKELITRVRLTEDIPLVLVGNKVDLEQQRQVTTEEGRNLA 134

Query: 78  VKYNCTFHEVSVA 90
            ++NC F E S A
Sbjct: 135 REFNCPFFETSAA 147

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 64.2 bits (157), Expect = 3e-13
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 4/99 (4%)

Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G I+VYS+  ++SF+        +       +VP++L+ NK DL   RQV    G+  A 
Sbjct: 75  GYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHMERQVSAEEGKKLAE 134

Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLLTE---SRGGPPSG 114
            +   F E S  +N   + +AF+ L+ E        P G
Sbjct: 135 SWGAAFLESSAKENE-NVEEAFELLIEEIEKVENPLPPG 172

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 62.3 bits (152), Expect = 9e-13
 Identities = 30/87 (34%), Positives = 48/87 (55%), Gaps = 2/87 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D++SF+   + ++N+  H A  +V  ML+ NK D+E  R V +  G + 
Sbjct: 76  AMGIILVYDITDEKSFENIKNWMRNIDEH-ASEDVERMLVGNKCDMEEKRVVSKEEGEAL 134

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHL 103
           A +Y   F E S A  +  + +AF  L
Sbjct: 135 AREYGIKFLETS-AKANINVEEAFLTL 160

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 33/90 (36%), Positives = 50/90 (55%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  K +F+     L+ L+ H A +N+ +ML+ NK DL HLR V     ++ 
Sbjct: 76  AVGALLVYDITKKSTFENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTEEAKAF 134

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K   +F E S A +   + +AF  LLTE
Sbjct: 135 AEKNGLSFIETS-ALDGTNVEEAFKQLLTE 163

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 61.4 bits (150), Expect = 2e-12
 Identities = 25/68 (36%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 21  IIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80
           I+VY +  +ESF+ A S ++ LQ H    N+ + L  NK DLE  RQV     +  A + 
Sbjct: 78  IVVYDITSEESFEKAKSWVKELQEH-GPPNIVIALAGNKADLESKRQVSTEEAQEYADEN 136

Query: 81  NCTFHEVS 88
              F E S
Sbjct: 137 GLLFMETS 144

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 25/74 (33%), Positives = 42/74 (56%)

Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G I+VYSL+++++F         + R +    VP++L+ NK+DLE  R+V  + GR+ A 
Sbjct: 75  GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAE 134

Query: 79  KYNCTFHEVSVADN 92
           ++ C F E S    
Sbjct: 135 EWGCPFMETSAKSK 148

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 56.8 bits (138), Expect = 9e-11
 Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           ADG I+VY + D +SF      ++ L++ R  NN+ ++++ NK+DLE  R V +S     
Sbjct: 73  ADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEY 131

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHL 103
           A        E S       I + F  L
Sbjct: 132 AKSVGAKHFETSAKTGK-GIEELFLSL 157

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 57.0 bits (138), Expect = 9e-11
 Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G IIVY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 75  AHGIIIVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTDKKVVDYTEAKEF 133

Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A +    F E S A N+  + +AF
Sbjct: 134 ADELGIPFLETS-AKNATNVEEAF 156

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 56.8 bits (137), Expect = 2e-10
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G + VYS+  + SF+   S  + + R +  + VP++L+ NK DL+  RQV    G+  A 
Sbjct: 79  GFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAK 138

Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            +   F E S A     + +AF  L+ E R
Sbjct: 139 SFGIPFLETS-AKQRVNVDEAFYELVREIR 167

Length = 189

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 1/86 (1%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G ++V+S+ D+ SF+        + R +  +  P++L+ NK DLEH RQV    G+  A
Sbjct: 75  EGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRQVSREEGQELA 134

Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHL 103
            +    + E S A +   + +AF  L
Sbjct: 135 RQLKIPYIETS-AKDRVNVDKAFHDL 159

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 56.5 bits (136), Expect = 3e-10
 Identities = 43/136 (31%), Positives = 66/136 (48%), Gaps = 14/136 (10%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  +++FD     L+ L+ H A +N+ +M+  NK DL HLR V E  G++ 
Sbjct: 85  AVGALLVYDITKRQTFDNVQRWLRELRDH-ADSNIVIMMAGNKSDLNHLRSVAEEDGQAL 143

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNK 136
           A K   +F E S A  +  + +AF  +L E        I+ I      K L      +N 
Sbjct: 144 AEKEGLSFLETS-ALEATNVEKAFQTILLE--------IYHIIS---KKALAAQEAAANS 191

Query: 137 SPPTHQGGTVVVCNKS 152
             P  QG T+ V + S
Sbjct: 192 GLPG-QGTTINVADTS 206

Length = 216

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 53.7 bits (129), Expect = 2e-09
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G ++VYS+  + +F+      + + R +   +VP++L+ NK DLE  R V +  G++ A 
Sbjct: 75  GFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 134

Query: 79  KYNCTFHEVS 88
           ++ C F E S
Sbjct: 135 QWGCAFLETS 144

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 23/71 (32%), Positives = 39/71 (54%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G ++V+S+ D ESF       + + R +  +NVP++L+ NK DLE  RQV      + A
Sbjct: 73  EGFLLVFSITDMESFTALAEFREQILRVKEDDNVPLLLVGNKCDLEDKRQVSVEEAANLA 132

Query: 78  VKYNCTFHEVS 88
            ++   + E S
Sbjct: 133 EQWGVNYVETS 143

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 51.9 bits (125), Expect = 7e-09
 Identities = 29/89 (32%), Positives = 46/89 (51%), Gaps = 2/89 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY +  +++FD   + L  L  +    +   ML+ NK+D E+ R+V    G+  
Sbjct: 73  AQGVILVYDVTRRDTFDNLDTWLNELDTYSTNPDAVKMLVGNKIDKEN-REVTREEGQKF 131

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLT 105
           A K+N  F E S A     + QAF+ L+ 
Sbjct: 132 ARKHNMLFIETS-AKTRIGVQQAFEELVE 159

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 51.7 bits (124), Expect = 8e-09
 Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G + V+++  ++SF+   +  + ++R +  ++VP++L+ NK DL   R V    G+  A
Sbjct: 74  EGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSTRQGQDLA 132

Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
             Y   + E S A     + +AF  L+ E R
Sbjct: 133 KSYGIPYIETS-AKTRQGVEEAFYTLVREIR 162

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 51.1 bits (123), Expect = 1e-08
 Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 2/82 (2%)

Query: 20  CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK 79
            ++VY + +++SFD     + ++ R    N+V ++L+ NK DL   RQV    G   A +
Sbjct: 76  AVVVYDITNRQSFDNTDKWIDDV-RDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE 134

Query: 80  YNCTFHEVSVADNSPAIYQAFD 101
            N  F E S A     + Q F 
Sbjct: 135 NNAMFIETS-AKAGHNVKQLFK 155

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 1/71 (1%)

Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G  +VYS+  ++SF+      + + R +   +VP++L+ NK DLE  R V +  G++ A 
Sbjct: 75  GFALVYSITAQQSFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVSKEEGQNLAR 134

Query: 79  KY-NCTFHEVS 88
           ++ NC F E S
Sbjct: 135 QWGNCPFLETS 145

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTL----QNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
             G ++VY + D++SF+   S L    Q    H  + N+ V++ ANK+DL   R V E  
Sbjct: 73  TQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDE 132

Query: 73  GRSTAVKYNCTFHEVS 88
           GR  A      + E S
Sbjct: 133 GRLWAESKGFKYFETS 148

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 49.1 bits (117), Expect = 7e-08
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 2/74 (2%)

Query: 21  IIVYSLIDKESFDYAVSTLQNLQRHRAVN--NVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           I+VYS+  K+S +      + +   +  N   +P+ML+ NK D    R+V  S G + A 
Sbjct: 77  ILVYSITSKQSLEELKPIYELICEIKGNNLEKIPIMLVGNKCDESPSREVSSSEGAALAR 136

Query: 79  KYNCTFHEVSVADN 92
            +NC F E S   N
Sbjct: 137 TWNCAFMETSAKTN 150

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 49.0 bits (117), Expect = 8e-08
 Identities = 25/77 (32%), Positives = 45/77 (58%), Gaps = 1/77 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  +E+F++  S L++ ++H + +N+ +ML+ NK DLE  R+V    G + 
Sbjct: 77  AAGALLVYDITRRETFNHLTSWLEDARQH-SNSNMTIMLIGNKCDLESRREVSYEEGEAF 135

Query: 77  AVKYNCTFHEVSVADNS 93
           A ++   F E S    S
Sbjct: 136 AREHGLIFMETSAKTAS 152

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score = 49.2 bits (117), Expect = 1e-07
 Identities = 28/84 (33%), Positives = 47/84 (55%), Gaps = 2/84 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  +E+F++  S L++ ++H A  N+ +ML+ NK DL H R V    G   
Sbjct: 79  AAGALLVYDITRRETFNHLASWLEDARQH-ANANMTIMLIGNKCDLAHRRAVSTEEGEQF 137

Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A ++   F E S A  +  + +AF
Sbjct: 138 AKEHGLIFMEAS-AKTAQNVEEAF 160

Length = 210

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 2/78 (2%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQR--HRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
           +G I+VYS+  + +F+      + +QR    +  +VP+M++ NK D  + R+V    G +
Sbjct: 72  EGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAA 131

Query: 76  TAVKYNCTFHEVSVADNS 93
            A +  C F E S   N 
Sbjct: 132 LARRLGCEFIEASAKTNV 149

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 47.0 bits (111), Expect = 5e-07
 Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 1/68 (1%)

Query: 21  IIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80
           I+VY + +++SF+     +Q++   R   +V + L+ NK DL  LR+V    G   A +Y
Sbjct: 57  IVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLGDLRKVTYEEGMQKAQEY 115

Query: 81  NCTFHEVS 88
           N  FHE S
Sbjct: 116 NTMFHETS 123

Length = 176

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 45.6 bits (108), Expect = 2e-06
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 2/93 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D   +VYS+ D ESF+      + +   +    VP++++ NK+D    RQV+ +   ST
Sbjct: 71  GDAFALVYSVDDPESFEEVKRLREEILEVKEDKFVPIVVVGNKIDSLAERQVEAADALST 130

Query: 77  A-VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
             + +N  F E S  DN   + + F  LL ++ 
Sbjct: 131 VELDWNNGFVEASAKDNE-NVTEVFKELLQQAN 162

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 18/58 (31%), Positives = 29/58 (50%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
           A+G +IVY    +ES D          R  A ++VP++L+ NK+DL   +   E +  
Sbjct: 78  ANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILN 135

Length = 219

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 1/94 (1%)

Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G ++++ L  ++SF    + +  LQ H    N  ++L+ NK DL   R+V E
Sbjct: 81  TAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCENPDIVLIGNKADLPDQREVSE 140

Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
              R  A KY   + E S A     + +A + LL
Sbjct: 141 RQARELADKYGIPYFETSAA-TGQNVEKAVETLL 173

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 44.0 bits (104), Expect = 5e-06
 Identities = 30/90 (33%), Positives = 46/90 (51%), Gaps = 7/90 (7%)

Query: 6   TEGT--LTAM----ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK 59
           T GT   TAM    I    G ++VYS+  + S +      + + R +  +NVP++L+ NK
Sbjct: 56  TAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNK 115

Query: 60  LDLEHLRQVDESLGRSTAVKYNCT-FHEVS 88
            DLE  RQV    G S + ++    F+E S
Sbjct: 116 ADLEDDRQVSREDGVSLSQQWGNVPFYETS 145

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 2/76 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A  CI+V+S  D+ESF+   S  + ++      ++P++L+  K+DL     +      + 
Sbjct: 75  AQACILVFSTTDRESFEAIESWKEKVE--AECGDIPMVLVQTKIDLLDQAVITNEEAEAL 132

Query: 77  AVKYNCTFHEVSVADN 92
           A +        SV D+
Sbjct: 133 AKRLQLPLFRTSVKDD 148

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           AD  ++V    D+ES + A   +    R      +P++L+ NK+DL   R+V+E L    
Sbjct: 76  ADLILLVVDSTDRESEEDAKLLILRRLRKE---GIPIILVGNKIDLLEEREVEELLRLEE 132

Query: 77  AVK-YNCTFHEVSVADNSPAIYQAFDHLLT 105
             K       EVS       + + F+ L+ 
Sbjct: 133 LAKILGVPVFEVSAKTGE-GVDELFEKLIE 161

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 43.3 bits (102), Expect = 1e-05
 Identities = 18/69 (26%), Positives = 34/69 (49%)

Query: 21  IIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80
            +VY + ++ SF+     +  ++ H    + P +L+ NK DL   R+VD +  ++ A   
Sbjct: 81  CVVYDVTNEVSFNNCSRWINRVRTHSHGLHTPGVLVGNKCDLTDRREVDAAQAQALAQAN 140

Query: 81  NCTFHEVSV 89
              F+E S 
Sbjct: 141 TLKFYETSA 149

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 2/72 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + ++ SFD     ++ +  H     VP +L+ N+L L   RQV     ++ 
Sbjct: 79  AQGIILVYDITNRWSFDGIDRWIKEIDEH--APGVPKILVGNRLHLAFKRQVATEQAQAY 136

Query: 77  AVKYNCTFHEVS 88
           A +   TF EVS
Sbjct: 137 AERNGMTFFEVS 148

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 1/46 (2%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVN-NVPVMLLANKL 60
           WAD  ++VY L D+ES +     +  L   R +   +PV+L+ NKL
Sbjct: 71  WADAILLVYDLTDRESLNEVSRLIAWLPNLRKLGGKIPVILVGNKL 116

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 40.8 bits (96), Expect = 8e-05
 Identities = 21/77 (27%), Positives = 38/77 (49%), Gaps = 5/77 (6%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE---HLRQVDESLG 73
           + G I V    D+E F+ + S  + +  + A+  VP+++LANK DL     + ++ E   
Sbjct: 75  SHGVIYVIDSTDRERFNESKSAFEKVINNEALEGVPLLVLANKQDLPDALSVAEIKEVFD 134

Query: 74  RSTAV--KYNCTFHEVS 88
              A+  + +C    VS
Sbjct: 135 DCIALIGRRDCLVQPVS 151

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 1/90 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A+G II Y +  + SF+ +V            +NV ++L+ NK DLE  R+V      + 
Sbjct: 76  ANGAIIAYDITRRSSFE-SVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTL 134

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A  Y       + A  S  + +AF  + TE
Sbjct: 135 AEHYGILAVLETSAKESSNVEEAFLLMATE 164

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 22/94 (23%), Positives = 43/94 (45%), Gaps = 10/94 (10%)

Query: 21  IIVYSLIDKESFDYAVSTLQN--------LQRHRAVNNVPVMLLANKLDLEHLRQVD-ES 71
           I+V+SL ++ESF+      +           + +    +P+++  NK D +  R+V  + 
Sbjct: 76  ILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDE 135

Query: 72  LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLT 105
           + +      NC + EVS   NS  + + F  L +
Sbjct: 136 VEQLVGGDENCAYFEVSAKKNS-NLDEMFRALFS 168

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 39.9 bits (94), Expect = 1e-04
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE---SLGR 74
           DG I V    D+E  + A + L  L     +   P+++LANK DL       E    LG 
Sbjct: 68  DGLIFVVDSSDRERIEEAKNELHKLLNEEELKGAPLLILANKQDLPGALTESELIELLGL 127

Query: 75  STAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
            +           S       + +  D L+
Sbjct: 128 ESIKGRRWHIQPCSAVTGD-GLDEGLDWLI 156

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 38.7 bits (90), Expect = 4e-04
 Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 2/94 (2%)

Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G I++Y + ++ESF+ AV       +  + +N  V+L+ NK D+E  R V  
Sbjct: 68  TAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSA 126

Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
             GR  A +    F E S  +N   + Q F+ L+
Sbjct: 127 ERGRQLADQLGFEFFEASAKENI-NVKQVFERLV 159

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133303 cd04103, Centaurin_gamma, Centaurin gamma (CENTG) GTPase

 Score = 38.2 bits (89), Expect = 5e-04
 Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 8   GTLTAMIC-WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLA--NKLDLEH 64
           G   A    W D  I V+SL D+ SF         L  +R ++ +P++L+   + +   +
Sbjct: 56  GAPDAQFAGWVDAVIFVFSLEDEASFQTVYRLYHQLSSYRNISEIPLILVGTQDAISASN 115

Query: 65  LRQVDESLGR--STAVKYNCTFHEVS 88
            R +D++  R     +K  C+++E  
Sbjct: 116 PRVIDDARARQLCADMK-RCSYYETC 140

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues. GGAP has been shown to have high GTPase activity due to a direct intramolecular interaction between the N-terminal GTPase domain and the C-terminal ArfGAP domain. In human tissue, AGAP mRNA was detected in skeletal muscle, kidney, placenta, brain, heart, colon, and lung. Reduced expression levels were also observed in the spleen, liver, and small intestine. Length = 158

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 37.6 bits (88), Expect = 0.001
 Identities = 28/97 (28%), Positives = 46/97 (47%), Gaps = 13/97 (13%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRH-------RAVNNVPVMLLANKLDLEHLRQVD 69
           AD C++VY + + +SF+    +L + +         R   N P ++L NK+DLE  RQV 
Sbjct: 73  ADCCVLVYDVTNPKSFE----SLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEEKRQVS 128

Query: 70  ESLGRSTAV-KYNCTFHEVSVADNSPAIYQAFDHLLT 105
               +     K N  + E S A  +  + QAF+ +  
Sbjct: 129 TKKAQQWCKSKGNIPYFETS-AKEAINVDQAFETIAR 164

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 38.1 bits (88), Expect = 0.001
 Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 2/88 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDLEHLRQVDESLGRS 75
           A G I+VY +  +E+F              + N   V ML+ NK+D E  R V    G +
Sbjct: 86  AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMA 145

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHL 103
            A ++ C F E S A     + Q F+ L
Sbjct: 146 LAKEHGCLFLECS-AKTRENVEQCFEEL 172

Length = 211

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 21  IIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80
           + VY + +  SF    S ++  ++H   N VP +L+ NK DL    QV   L +  A  +
Sbjct: 80  VFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAH 139

Query: 81  NCTFHEVSV-----ADNSPAIYQAFDHLL 104
           +    E S       D+  AI+    H L
Sbjct: 140 SMPLFETSAKDPSENDHVEAIFMTLAHKL 168

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 2/84 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  + ++++  S L + +     N V + L+ NK DLE  R V     +  
Sbjct: 75  AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTV-IFLIGNKADLEAQRDVTYEEAKQF 133

Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A +    F E S A     +  AF
Sbjct: 134 ADENGLLFLECS-AKTGENVEDAF 156

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A+  I+ Y +  +ESF      L+ ++++ A N V  +L+ NK+DL   R+V +      
Sbjct: 80  ANALILTYDITCEESFRCLPEWLREIEQY-ANNKVITILVGNKIDLAERREVSQQRAEEF 138

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           +   +  + E S A  S  + + F  L   
Sbjct: 139 SDAQDMYYLETS-AKESDNVEKLFLDLACR 167

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 35.9 bits (83), Expect = 0.004
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV 68
           A G ++VY +  +ESF+ A++      R  A  ++ ++L+ NK DLE  R+V
Sbjct: 73  AAGALLVYDITSRESFN-ALTNWLTDARTLASPDIVIILVGNKKDLEDDREV 123

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 6   TEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL 62
               L A I  A+   +VYS+    + +  + T       R    VP++L+ NK DL
Sbjct: 62  DRANLAAEIRKANVICLVYSVDRPSTLE-RIRTKWLPLIRRLGVKVPIILVGNKSDL 117

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 36.3 bits (84), Expect = 0.004
 Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 2/88 (2%)

Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G ++V+ + ++ESF++    L+  + H   +    +L+ +K DLE  RQV        A 
Sbjct: 78  GVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAK 137

Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLLTE 106
                + E S       + +AF  LLT+
Sbjct: 138 DLGMKYIETSARTGDN-VEEAF-ELLTQ 163

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG0092|consensus	200		99.96
KOG0084|consensus	205		99.96
KOG0078|consensus	207		99.96
KOG0094|consensus	221		99.95
KOG0080|consensus	209		99.95
KOG0093|consensus	193		99.95
KOG0098|consensus	216		99.94
KOG0088|consensus	218		99.94
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
KOG0087|consensus	222		99.94
KOG0091|consensus	213		99.94
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.94
KOG0079|consensus	198		99.93
KOG0394|consensus	210		99.93
KOG0083|consensus	192		99.93
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.92
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.92
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.92
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.92
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.91
PTZ00099	176	rab6; Provisional	99.91
KOG0086|consensus	214		99.91
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.91
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.91
KOG0081|consensus	219		99.9
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.9
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.9
KOG0395|consensus	196		99.89
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.89
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.89
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.89
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.89
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.89
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.89
KOG0095|consensus	213		99.89
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.89
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.89
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.89
KOG0097|consensus	215		99.88
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.88
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.88
PTZ00369	189	Ras-like protein; Provisional	99.88
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.88
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.88
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.88
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.88
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.87
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.87
PLN03108	210	Rab family protein; Provisional	99.87
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.87
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.87
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.87
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.87
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.87
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.87
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.87
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.87
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.87
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.86
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.86
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.86
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.86
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.86
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.86
KOG4252|consensus	246		99.86
PLN03110	216	Rab GTPase; Provisional	99.86
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.85
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.85
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.85
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.85
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.85
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.85
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.85
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.85
KOG0393|consensus	198		99.84
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.84
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.84
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.84
PLN03118	211	Rab family protein; Provisional	99.84
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.84
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.84
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.83
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.83
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.83
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.83
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.82
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.82
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.82
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.81
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.81
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.81
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.81
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.81
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.81
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.81
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.8
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.8
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.8
PLN00223	181	ADP-ribosylation factor; Provisional	99.8
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.8
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.8
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.79
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.79
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.79
PTZ00133	182	ADP-ribosylation factor; Provisional	99.78
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.77
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.77
KOG3883|consensus	198		99.77
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.77
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.76
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.75
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.75
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.74
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.73
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.73
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.73
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.72
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.72
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.72
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.72
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.72
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.71
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.7
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.68
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.66
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	99.65
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.65
PRK12299	335	obgE GTPase CgtA; Reviewed	99.63
PLN00023	334	GTP-binding protein; Provisional	99.61
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.61
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.6
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.59
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.58
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.58
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.52
KOG0096|consensus	216		99.51
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.5
KOG0073|consensus	185		99.49
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.49
KOG4423|consensus	229		99.47
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.47
KOG0070|consensus	181		99.47
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.46
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.46
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.46
PRK15494	339	era GTPase Era; Provisional	99.46
KOG0075|consensus	186		99.45
COG1100	219	GTPase SAR1 and related small G proteins [General	99.45
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.45
PRK12297	424	obgE GTPase CgtA; Reviewed	99.41
KOG0076|consensus	197		99.4
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.38
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.38
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.38
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.37
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.35
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.35
PRK03003	472	GTP-binding protein Der; Reviewed	99.34
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.33
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.33
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.33
PRK11058	426	GTPase HflX; Provisional	99.33
PRK03003	472	GTP-binding protein Der; Reviewed	99.31
KOG0071|consensus	180		99.31
PRK12298	390	obgE GTPase CgtA; Reviewed	99.31
cd00881	189	GTP_translation_factor GTP translation factor fami	99.29
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.28
PRK00089	292	era GTPase Era; Reviewed	99.28
PRK04213	201	GTP-binding protein; Provisional	99.27
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.26
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.26
PRK05433	600	GTP-binding protein LepA; Provisional	99.25
PRK12289	352	GTPase RsgA; Reviewed	99.25
PRK12296	500	obgE GTPase CgtA; Reviewed	99.23
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.22
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.21
KOG0072|consensus	182		99.2
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	99.19
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.18
KOG1673|consensus	205		99.17
PRK00098	298	GTPase RsgA; Reviewed	99.16
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.15
PRK12288	347	GTPase RsgA; Reviewed	99.14
COG2229	187	Predicted GTPase [General function prediction only	99.13
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.13
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.12
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.12
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.11
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.11
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.1
CHL00189	742	infB translation initiation factor 2; Provisional	99.09
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.07
PRK00093	435	GTP-binding protein Der; Reviewed	99.07
KOG1707|consensus	625		99.06
PRK05306	787	infB translation initiation factor IF-2; Validated	99.06
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.06
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.05
COG1159	298	Era GTPase [General function prediction only]	99.04
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.02
PRK00093	435	GTP-binding protein Der; Reviewed	99.01
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.0
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.0
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	98.98
cd01896	233	DRG The developmentally regulated GTP-binding prot	98.97
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.95
PRK04000	411	translation initiation factor IF-2 subunit gamma;	98.95
KOG0074|consensus	185		98.95
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	98.94
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	98.91
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	98.91
PRK12317	425	elongation factor 1-alpha; Reviewed	98.89
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	98.88
PRK04004	586	translation initiation factor IF-2; Validated	98.87
cd04105	203	SR_beta Signal recognition particle receptor, beta	98.86
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	98.85
PRK14845	1049	translation initiation factor IF-2; Provisional	98.84
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.83
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	98.77
PRK09866	741	hypothetical protein; Provisional	98.76
COG0486	454	ThdF Predicted GTPase [General function prediction	98.76
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.74
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	98.74
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.73
COG2262	411	HflX GTPases [General function prediction only]	98.71
COG1160	444	Predicted GTPases [General function prediction onl	98.71
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	98.69
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	98.69
PRK10218	607	GTP-binding protein; Provisional	98.68
PRK13796	365	GTPase YqeH; Provisional	98.67
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.67
KOG1489|consensus	366		98.67
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.64
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.64
PLN00043	447	elongation factor 1-alpha; Provisional	98.6
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.59
COG1160	444	Predicted GTPases [General function prediction onl	98.57
PRK13768	253	GTPase; Provisional	98.57
KOG0462|consensus	650		98.56
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.56
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.55
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.53
PRK01889	356	GTPase RsgA; Reviewed	98.53
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	98.53
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	98.52
TIGR00101	199	ureG urease accessory protein UreG. This model rep	98.51
PRK12736	394	elongation factor Tu; Reviewed	98.5
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	98.47
COG0536	369	Obg Predicted GTPase [General function prediction	98.46
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	98.45
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	98.44
KOG0077|consensus	193		98.44
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.42
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.41
PRK00741	526	prfC peptide chain release factor 3; Provisional	98.39
TIGR00485	394	EF-Tu translation elongation factor TU. This align	98.38
PRK13351	687	elongation factor G; Reviewed	98.36
KOG1423|consensus	379		98.31
PRK12735	396	elongation factor Tu; Reviewed	98.31
COG1162	301	Predicted GTPases [General function prediction onl	98.29
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	98.28
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	98.28
KOG1145|consensus	683		98.16
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	98.16
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	98.16
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	98.15
PRK12740	668	elongation factor G; Reviewed	98.15
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	98.13
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	97.99
CHL00071	409	tufA elongation factor Tu	97.98
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	97.97
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.97
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	97.92
KOG0705|consensus	749		97.91
PLN03127	447	Elongation factor Tu; Provisional	97.91
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	97.91
PRK00049	396	elongation factor Tu; Reviewed	97.89
PF09439	181	SRPRB: Signal recognition particle receptor beta s	97.88
KOG1707|consensus	625		97.87
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.87
PRK09602	396	translation-associated GTPase; Reviewed	97.81
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	97.8
KOG3905|consensus	473		97.8
PLN03126	478	Elongation factor Tu; Provisional	97.79
PRK09435	332	membrane ATPase/protein kinase; Provisional	97.79
PTZ00141	446	elongation factor 1- alpha; Provisional	97.74
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.73
COG1084	346	Predicted GTPase [General function prediction only	97.72
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.72
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	97.67
KOG1191|consensus	531		97.66
KOG0090|consensus	238		97.64
COG1163	365	DRG Predicted GTPase [General function prediction	97.6
PRK12739	691	elongation factor G; Reviewed	97.59
KOG1490|consensus	620		97.55
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	97.52
PF00503	389	G-alpha: G-protein alpha subunit; InterPro: IPR001	97.46
KOG0082|consensus	354		97.44
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	97.41
COG0218	200	Predicted GTPase [General function prediction only	97.39
KOG1144|consensus	1064		97.38
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	97.28
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.26
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	97.23
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	97.2
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	97.17
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	97.11
COG1217	603	TypA Predicted membrane GTPase involved in stress	97.09
KOG1532|consensus	366		97.0
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	96.99
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	96.96
COG1161	322	Predicted GTPases [General function prediction onl	96.96
COG3276	447	SelB Selenocysteine-specific translation elongatio	96.9
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	96.84
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	96.78
PRK00007	693	elongation factor G; Reviewed	96.73
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	96.55
cd03110	179	Fer4_NifH_child This protein family's function is	96.42
KOG2423|consensus	572		96.39
KOG1424|consensus	562		96.37
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	96.35
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	96.25
KOG4273|consensus	418		96.13
PRK07560	731	elongation factor EF-2; Reviewed	95.88
PTZ00416	836	elongation factor 2; Provisional	95.84
PLN00116	843	translation elongation factor EF-2 subunit; Provis	95.8
KOG0458|consensus	603		95.79
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	95.7
KOG0410|consensus	410		95.7
KOG3886|consensus	295		95.68
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	95.67
PF11111	176	CENP-M: Centromere protein M (CENP-M); InterPro: I	95.65
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	95.52
KOG2484|consensus	435		95.35
KOG0461|consensus	522		95.17
COG0050	394	TufB GTPases - translation elongation factors [Tra	95.15
KOG0447|consensus	980		95.15
KOG0468|consensus	971		94.65
COG1149	284	MinD superfamily P-loop ATPase containing an inser	94.51
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	94.46
COG3596	296	Predicted GTPase [General function prediction only	94.41
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	94.05
PF14331	266	ImcF-related_N: ImcF-related N-terminal domain	93.96
KOG3887|consensus	347		93.71
KOG0099|consensus	379		93.66
PRK13505	557	formate--tetrahydrofolate ligase; Provisional	92.97
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	92.2
COG5258	527	GTPBP1 GTPase [General function prediction only]	92.17
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	92.15
KOG0466|consensus	466		91.68
KOG1954|consensus	532		91.12
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	90.04
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	88.33
cd03111	106	CpaE_like This protein family consists of proteins	87.92
COG0523	323	Putative GTPases (G3E family) [General function pr	86.57
KOG0460|consensus	449		85.49
KOG2485|consensus	335		85.45
COG4963	366	CpaE Flp pilus assembly protein, ATPase CpaE [Intr	85.07
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	84.11
cd02036	179	MinD Bacterial cell division requires the formatio	83.95
KOG1486|consensus	364		81.85
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	81.79
PHA02518	211	ParA-like protein; Provisional	81.0
PRK13695	174	putative NTPase; Provisional	80.72
PTZ00258	390	GTP-binding protein; Provisional	80.62
COG0012	372	Predicted GTPase, probable translation factor [Tra	80.34

>KOG0092|consensus

Probab=99.96  E-value=2.1e-29  Score=181.04  Aligned_cols=111  Identities=25%  Similarity=0.318  Sum_probs=104.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  +.+.||++|+++|+|||+|+.+||..++.|+.++.+.. ++++.+.|||||+||.+.++|..+++..+|+.
T Consensus        61 TAGQERy~slapMYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~-~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~  139 (200)
T KOG0092|consen   61 TAGQERYHSLAPMYYRGANAAIVVYDITDEESFEKAKNWVKELQRQA-SPNIVIALVGNKADLLERREVEFEEAQAYAES  139 (200)
T ss_pred             cCCcccccccccceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhC-CCCeEEEEecchhhhhhcccccHHHHHHHHHh
Confidence            9999994  99999999999999999999999999999999999988 48899999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSG  114 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~  114 (173)
                      .|..|||+|||+|. ||+++|..|++.++......
T Consensus       140 ~gll~~ETSAKTg~-Nv~~if~~Ia~~lp~~~~~~  173 (200)
T KOG0092|consen  140 QGLLFFETSAKTGE-NVNEIFQAIAEKLPCSDPQE  173 (200)
T ss_pred             cCCEEEEEeccccc-CHHHHHHHHHHhccCccccc
Confidence            99999999999999 99999999999998855443

>KOG0084|consensus

Probab=99.96  E-value=2.2e-29  Score=181.58  Aligned_cols=110  Identities=28%  Similarity=0.330  Sum_probs=104.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  ++.+||++||+||+|||+|+.+||+.+..|+.++.++. ..++|++|||||+|+.+.+.|+.++++.|+..
T Consensus        65 TAGQERFrtit~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~-~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~  143 (205)
T KOG0084|consen   65 TAGQERFRTITSSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYA-SENVPKLLVGNKCDLTEKRVVSTEEAQEFADE  143 (205)
T ss_pred             ccccHHHhhhhHhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhc-cCCCCeEEEeeccccHhheecCHHHHHHHHHh
Confidence            8999995  99999999999999999999999999999999999998 57799999999999999999999999999999


Q ss_pred             cCCe-EEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          80 YNCT-FHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        80 ~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      +++. |+|+|||++. ||++.|..|+..+.+....
T Consensus       144 ~~~~~f~ETSAK~~~-NVe~~F~~la~~lk~~~~~  177 (205)
T KOG0084|consen  144 LGIPIFLETSAKDST-NVEDAFLTLAKELKQRKGL  177 (205)
T ss_pred             cCCcceeecccCCcc-CHHHHHHHHHHHHHHhccc
Confidence            9999 9999999999 9999999999998875443

>KOG0078|consensus

Probab=99.96  E-value=4.3e-29  Score=182.17  Aligned_cols=106  Identities=31%  Similarity=0.395  Sum_probs=102.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  ++.+||++|+++++|||+++..||+++..|+..|.++. +.++|++|||||+|+...|+|+.+.++.+|.+
T Consensus        68 taGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a-~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e  146 (207)
T KOG0078|consen   68 TAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHA-SDDVVKILVGNKCDLEEKRQVSKERGEALARE  146 (207)
T ss_pred             cccchhHHHHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhC-CCCCcEEEeeccccccccccccHHHHHHHHHH
Confidence            8999996  99999999999999999999999999999999999998 46899999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +|+.|+|+|||+|. ||+++|..|++.+..
T Consensus       147 ~G~~F~EtSAk~~~-NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  147 YGIKFFETSAKTNF-NIEEAFLSLARDILQ  175 (207)
T ss_pred             hCCeEEEccccCCC-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999999986

>KOG0094|consensus

Probab=99.95  E-value=4.2e-28  Score=174.64  Aligned_cols=110  Identities=26%  Similarity=0.375  Sum_probs=104.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  +.++||+++.++|+|||++|..||++...|++.+....+..++.++|||||.||.+.++++.+++...|++
T Consensus        78 TAGQERFrslipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAke  157 (221)
T KOG0094|consen   78 TAGQERFRSLIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKE  157 (221)
T ss_pred             cccHHHHhhhhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhHHHHHHHHHH
Confidence            9999995  99999999999999999999999999999999999988766799999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      ++..|+++||+.|. ||.++|..|+..+.+...
T Consensus       158 l~a~f~etsak~g~-NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  158 LNAEFIETSAKAGE-NVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             hCcEEEEecccCCC-CHHHHHHHHHHhccCccc
Confidence            99999999999999 999999999988887544

>KOG0080|consensus

Probab=99.95  E-value=6.8e-28  Score=168.67  Aligned_cols=114  Identities=25%  Similarity=0.278  Sum_probs=108.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  ++++||++|.++|+|||+|.+++|..+..|+.++.-+...+++..++||||+|..++|.|+.+++..||++
T Consensus        67 TAGqErFRtLTpSyyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~  146 (209)
T KOG0080|consen   67 TAGQERFRTLTPSYYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARK  146 (209)
T ss_pred             ccchHhhhccCHhHhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccccHHHHHHHHHh
Confidence            9999996  99999999999999999999999999999999999999778999999999999988899999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIH  116 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~  116 (173)
                      +++-|+|+|||+.+ ||+..|+.|+..|++.+....+
T Consensus       147 h~~LFiE~SAkt~~-~V~~~FeelveKIi~tp~l~~~  182 (209)
T KOG0080|consen  147 HRCLFIECSAKTRE-NVQCCFEELVEKIIETPSLWEE  182 (209)
T ss_pred             hCcEEEEcchhhhc-cHHHHHHHHHHHHhcCcchhhc
Confidence            99999999999999 9999999999999998876544

>KOG0093|consensus

Probab=99.95  E-value=1.1e-27  Score=165.43  Aligned_cols=107  Identities=26%  Similarity=0.355  Sum_probs=102.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||+.  ++..||++|+++|+|||+++.+||..++.|.-.|..++ ..++|+||||||||+.++|.++.+.+..++.+
T Consensus        77 TagqEryrtiTTayyRgamgfiLmyDitNeeSf~svqdw~tqIktys-w~naqvilvgnKCDmd~eRvis~e~g~~l~~~  155 (193)
T KOG0093|consen   77 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWITQIKTYS-WDNAQVILVGNKCDMDSERVISHERGRQLADQ  155 (193)
T ss_pred             cccchhhhHHHHHHhhccceEEEEEecCCHHHHHHHHHHHHHheeee-ccCceEEEEecccCCccceeeeHHHHHHHHHH
Confidence            8999995  99999999999999999999999999999999999887 57899999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +|++|||+|||.+. ||+++|+.++..|.+.
T Consensus       156 LGfefFEtSaK~Ni-nVk~~Fe~lv~~Ic~k  185 (193)
T KOG0093|consen  156 LGFEFFETSAKENI-NVKQVFERLVDIICDK  185 (193)
T ss_pred             hChHHhhhcccccc-cHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999988763

>KOG0098|consensus

Probab=99.94  E-value=2.4e-27  Score=169.60  Aligned_cols=109  Identities=28%  Similarity=0.346  Sum_probs=103.1

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||.  +++.+||++|-++|||||++..+||.++..|+.+++++. .+++.++|+|||+||...|+|+.+|++.||++
T Consensus        62 taGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~-~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~e  140 (216)
T KOG0098|consen   62 TAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHS-NENMVIMLIGNKSDLEARREVSKEEGEAFARE  140 (216)
T ss_pred             cCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhc-CCCcEEEEEcchhhhhccccccHHHHHHHHHH
Confidence            899998  499999999999999999999999999999999999986 58999999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      +|+.|+|+||+++. ||+++|...+..|+....
T Consensus       141 hgLifmETSakt~~-~VEEaF~nta~~Iy~~~q  172 (216)
T KOG0098|consen  141 HGLIFMETSAKTAE-NVEEAFINTAKEIYRKIQ  172 (216)
T ss_pred             cCceeehhhhhhhh-hHHHHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998886443

>KOG0088|consensus

Probab=99.94  E-value=3.2e-27  Score=165.00  Aligned_cols=110  Identities=24%  Similarity=0.320  Sum_probs=103.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  +-+.||+++|++|+|||+||.+||+.++.|+.+++... ...+-++|||||+||.+++.|+.+++..+++.
T Consensus        69 TAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~ml-Gnei~l~IVGNKiDLEeeR~Vt~qeAe~YAes  147 (218)
T KOG0088|consen   69 TAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTML-GNEIELLIVGNKIDLEEERQVTRQEAEAYAES  147 (218)
T ss_pred             ccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHh-CCeeEEEEecCcccHHHhhhhhHHHHHHHHHh
Confidence            8999996  99999999999999999999999999999999999877 47789999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      .|..|+++||+++. ||.++|+.|...+++....
T Consensus       148 vGA~y~eTSAk~N~-Gi~elFe~Lt~~MiE~~s~  180 (218)
T KOG0088|consen  148 VGALYMETSAKDNV-GISELFESLTAKMIEHSSQ  180 (218)
T ss_pred             hchhheeccccccc-CHHHHHHHHHHHHHHHhhh
Confidence            99999999999999 9999999999998885533

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=1.1e-25  Score=167.87  Aligned_cols=107  Identities=26%  Similarity=0.339  Sum_probs=97.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||++++  ++..||++||++|+|||+++++||+.+..|+..+.... ..++|++|||||+||...+++..+++..+++.
T Consensus        56 taGqe~~~~l~~~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~~~~~~a~~  134 (202)
T cd04120          56 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREISRQQGEKFAQQ  134 (202)
T ss_pred             CCCchhhHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence            8999984  88999999999999999999999999999999887764 46799999999999988888999999999987


Q ss_pred             c-CCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 Y-NCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      . ++.|++|||++|. ||+++|.+|+..+...
T Consensus       135 ~~~~~~~etSAktg~-gV~e~F~~l~~~~~~~  165 (202)
T cd04120         135 ITGMRFCEASAKDNF-NVDEIFLKLVDDILKK  165 (202)
T ss_pred             cCCCEEEEecCCCCC-CHHHHHHHHHHHHHHh
Confidence            5 7889999999999 9999999999988764

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0087|consensus

Probab=99.94  E-value=1e-26  Score=169.38  Aligned_cols=107  Identities=32%  Similarity=0.414  Sum_probs=102.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  ++.+||++|.++++|||++...+|+++..|+.+++.+. .++++++|||||+||.+.+.|..+++..+++.
T Consensus        70 TAGQERyrAitSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdha-d~nivimLvGNK~DL~~lraV~te~~k~~Ae~  148 (222)
T KOG0087|consen   70 TAGQERYRAITSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEK  148 (222)
T ss_pred             ccchhhhccccchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcC-CCCeEEEEeecchhhhhccccchhhhHhHHHh
Confidence            9999996  99999999999999999999999999999999999998 57999999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      .+..|+|+||.++. ||+.+|..++..|+..
T Consensus       149 ~~l~f~EtSAl~~t-NVe~aF~~~l~~I~~~  178 (222)
T KOG0087|consen  149 EGLFFLETSALDAT-NVEKAFERVLTEIYKI  178 (222)
T ss_pred             cCceEEEecccccc-cHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999888763

>KOG0091|consensus

Probab=99.94  E-value=4.6e-26  Score=159.93  Aligned_cols=109  Identities=23%  Similarity=0.276  Sum_probs=101.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |||||++  ++.+||+++-++++|||+++.+||++++.|+.+...+.. +..+.+.|||.|+||...|+|+.++++.++.
T Consensus        65 tagqerfrsitksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa  144 (213)
T KOG0091|consen   65 TAGQERFRSITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAA  144 (213)
T ss_pred             ccchHHHHHHHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHH
Confidence            9999994  999999999999999999999999999999999887765 4566789999999999999999999999999


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .+|+.|+|+||++|. ||++.|+.|++.+....
T Consensus       145 ~hgM~FVETSak~g~-NVeEAF~mlaqeIf~~i  176 (213)
T KOG0091|consen  145 SHGMAFVETSAKNGC-NVEEAFDMLAQEIFQAI  176 (213)
T ss_pred             hcCceEEEecccCCC-cHHHHHHHHHHHHHHHH
Confidence            999999999999999 99999999999887643

>cd04121 Rab40 Rab40 subfamily

Probab=99.94  E-value=8.9e-26  Score=166.79  Aligned_cols=105  Identities=29%  Similarity=0.324  Sum_probs=98.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||++++  +++.|++++|++|+|||++++.||+++..|+.++..+.  +++|+||||||+||.+.+.++.++++.+++.
T Consensus        62 t~G~~~~~~l~~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~--~~~piilVGNK~DL~~~~~v~~~~~~~~a~~  139 (189)
T cd04121          62 TSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA--PGVPKILVGNRLHLAFKRQVATEQAQAYAER  139 (189)
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccchhccCCCHHHHHHHHHH
Confidence            8999884  88999999999999999999999999999999998765  6899999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.||||||++|. ||+++|++|++.+..
T Consensus       140 ~~~~~~e~SAk~g~-~V~~~F~~l~~~i~~  168 (189)
T cd04121         140 NGMTFFEVSPLCNF-NITESFTELARIVLM  168 (189)
T ss_pred             cCCEEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>KOG0079|consensus

Probab=99.93  E-value=1.8e-26  Score=159.59  Aligned_cols=107  Identities=23%  Similarity=0.311  Sum_probs=101.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  ++..||++.+++++|||+|+.+||.++..|+++++..+  +.+|-||||||+|+++.+.|..+++..||..
T Consensus        64 tAGqErFrtitstyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~nc--dsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~  141 (198)
T KOG0079|consen   64 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNC--DSVPKVLVGNKNDDPERRVVDTEDARAFALQ  141 (198)
T ss_pred             cccHHHHHHHHHHHccCCceEEEEEECcchhhhHhHHHHHHHHHhcC--ccccceecccCCCCccceeeehHHHHHHHHh
Confidence            8999995  99999999999999999999999999999999999998  6899999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .|+++||+|||++. |++.+|+.|.++++...
T Consensus       142 mgie~FETSaKe~~-NvE~mF~cit~qvl~~k  172 (198)
T KOG0079|consen  142 MGIELFETSAKENE-NVEAMFHCITKQVLQAK  172 (198)
T ss_pred             cCchheehhhhhcc-cchHHHHHHHHHHHHHH
Confidence            99999999999999 99999999999887633

>KOG0394|consensus

Probab=99.93  E-value=1.1e-25  Score=160.72  Aligned_cols=111  Identities=21%  Similarity=0.313  Sum_probs=100.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCC--CccCCHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEH--LRQVDESLGR   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~--~~~v~~~~~~   74 (173)
                      |||||++  +.-.||++||++++|||+++++||+.+..|.+++..+..   +...|+||+|||+|+..  .++|+...++
T Consensus        65 TAGQERFqsLg~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq  144 (210)
T KOG0394|consen   65 TAGQERFQSLGVAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQ  144 (210)
T ss_pred             cccHHHhhhcccceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHH
Confidence            9999995  889999999999999999999999999999999988764   34689999999999975  3899999999


Q ss_pred             HHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          75 STAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        75 ~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      .||...| ++|||+|||++. ||+++|..++..++.....
T Consensus       145 ~WC~s~gnipyfEtSAK~~~-NV~~AFe~ia~~aL~~E~~  183 (210)
T KOG0394|consen  145 TWCKSKGNIPYFETSAKEAT-NVDEAFEEIARRALANEDR  183 (210)
T ss_pred             HHHHhcCCceeEEecccccc-cHHHHHHHHHHHHHhccch
Confidence            9999876 899999999999 9999999999999886543

>KOG0083|consensus

Probab=99.93  E-value=5e-26  Score=155.01  Aligned_cols=108  Identities=29%  Similarity=0.322  Sum_probs=101.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  .+..||++||+.+++||+++..||+++..|+.+|.++. ...+.++++|||||+..++.|..++++.+++.
T Consensus        54 tagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~-k~~v~l~llgnk~d~a~er~v~~ddg~kla~~  132 (192)
T KOG0083|consen   54 TAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYA-KEAVALMLLGNKCDLAHERAVKRDDGEKLAEA  132 (192)
T ss_pred             ccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHH-HhhHhHhhhccccccchhhccccchHHHHHHH
Confidence            8999994  99999999999999999999999999999999999987 46788999999999988899999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ++++|.|+|||+|. ||+..|-.|++.+.+..
T Consensus       133 y~ipfmetsaktg~-nvd~af~~ia~~l~k~~  163 (192)
T KOG0083|consen  133 YGIPFMETSAKTGF-NVDLAFLAIAEELKKLK  163 (192)
T ss_pred             HCCCceeccccccc-cHhHHHHHHHHHHHHhc
Confidence            99999999999999 99999999999887743

>cd04133 Rop_like Rop subfamily

Probab=99.92  E-value=1e-24  Score=159.42  Aligned_cols=105  Identities=21%  Similarity=0.299  Sum_probs=94.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc----------cC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLR----------QV   68 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~----------~v   68 (173)
                      |+|++++  ++..||++||++|+|||+++++||+.+ ..|+.++....  +++|++|||||+||.+.+          .+
T Consensus        56 t~G~~~~~~~~~~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~v  133 (176)
T cd04133          56 TAGQEDYNRLRPLSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA--PNVPIVLVGTKLDLRDDKQYLADHPGASPI  133 (176)
T ss_pred             CCCCccccccchhhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhccChhhhhhccCCCCC
Confidence            8999984  889999999999999999999999998 68999998765  579999999999996543          48


Q ss_pred             CHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          69 DESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        69 ~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +.+++..++...++ .|+||||++|. ||+++|..+++.+.+
T Consensus       134 ~~~~~~~~a~~~~~~~~~E~SAk~~~-nV~~~F~~~~~~~~~  174 (176)
T cd04133         134 TTAQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDAAIKVVLQ  174 (176)
T ss_pred             CHHHHHHHHHHcCCCEEEECCCCccc-CHHHHHHHHHHHHhc
Confidence            89999999999997 59999999999 999999999987654

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.92  E-value=8.8e-25  Score=162.24  Aligned_cols=102  Identities=21%  Similarity=0.285  Sum_probs=93.1

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCC----------------
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEH----------------   64 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~----------------   64 (173)
                      |||+++.++..||++||++|+|||+++++||+++. .|+.++....  +++|++|||||+||.+                
T Consensus        73 TaG~~~~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~  150 (195)
T cd01873          73 TFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC--PRVPVILVGCKLDLRYADLDEVNRARRPLARP  150 (195)
T ss_pred             CCCChhhhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhccccccchhhhcccccccc
Confidence            89998878888999999999999999999999997 5999988765  5799999999999964                


Q ss_pred             ---CccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          65 ---LRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        65 ---~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                         .+.|+.+++..+++++++.|+||||++|. ||+++|+.+++.
T Consensus       151 ~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~-~V~e~F~~~~~~  194 (195)
T cd01873         151 IKNADILPPETGRAVAKELGIPYYETSVVTQF-GVKDVFDNAIRA  194 (195)
T ss_pred             cccCCccCHHHHHHHHHHhCCEEEEcCCCCCC-CHHHHHHHHHHh
Confidence               47889999999999999999999999999 999999999863

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.92  E-value=2.1e-24  Score=158.62  Aligned_cols=104  Identities=18%  Similarity=0.165  Sum_probs=93.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |||++++  +++.||++||++|+|||+++++||+.+ ..|+.++.+..  +++|++|||||+||.+            .+
T Consensus        60 taG~e~~~~~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~~~~~~~~  137 (182)
T cd04172          60 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDLTTLVELSNHRQT  137 (182)
T ss_pred             CCCchhhHhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEeEChhhhcChhhHHHHHhcCCC
Confidence            8999884  889999999999999999999999998 78999998876  6799999999999964            34


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCccc-HHHHHHHHHHHHh
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPA-IYQAFDHLLTESR  108 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~-v~~lf~~l~~~i~  108 (173)
                      .|+.+++..+|+.+++ .|+||||++|. | |+++|..++..++
T Consensus       138 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~-n~v~~~F~~~~~~~~  180 (182)
T cd04172         138 PVSYDQGANMAKQIGAATYIECSALQSE-NSVRDIFHVATLACV  180 (182)
T ss_pred             CCCHHHHHHHHHHcCCCEEEECCcCCCC-CCHHHHHHHHHHHHh
Confidence            6899999999999995 89999999999 9 9999999988544

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.92  E-value=7.7e-24  Score=160.79  Aligned_cols=106  Identities=15%  Similarity=0.127  Sum_probs=94.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |||++++  +++.||++||++|+|||+++++||+.+ ..|+.++....  +++|+||||||+||.+            .+
T Consensus        68 TaG~e~~~~~~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~--~~~piilVgNK~DL~~~~~~~~~l~~~~~~  145 (232)
T cd04174          68 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYC--PSTRILLIGCKTDLRTDLSTLMELSNQKQA  145 (232)
T ss_pred             CCCchhhHHHHHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccchhhhhccccCC
Confidence            8999884  889999999999999999999999985 78999998865  5789999999999964            36


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .|+.+++..+|+.+++ .||||||++|..||+++|..++..+.+
T Consensus       146 ~Vs~~e~~~~a~~~~~~~~~EtSAktg~~~V~e~F~~~~~~~~~  189 (232)
T cd04174         146 PISYEQGCALAKQLGAEVYLECSAFTSEKSIHSIFRSASLLCLN  189 (232)
T ss_pred             cCCHHHHHHHHHHcCCCEEEEccCCcCCcCHHHHHHHHHHHHHH
Confidence            7899999999999998 699999999952699999999998876

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01875 RhoG RhoG subfamily

Probab=99.91  E-value=6.9e-24  Score=156.87  Aligned_cols=105  Identities=20%  Similarity=0.256  Sum_probs=93.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |||++++  +++.||++||++|+|||+++++||+.+. .|+.++....  +++|++|||||+||.+.            +
T Consensus        58 t~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~--~~~piilvgNK~DL~~~~~~~~~~~~~~~~  135 (191)
T cd01875          58 TAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC--PNVPILLVGTKKDLRNDADTLKKLKEQGQA  135 (191)
T ss_pred             CCCchhhhhhhhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEeChhhhcChhhHHHHhhccCC
Confidence            8999984  8899999999999999999999999996 5998887754  57999999999999654            2


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++..++..++ +.|+||||++|. ||+++|.+|++.+..
T Consensus       136 ~v~~~~~~~~a~~~~~~~~~e~SAk~g~-~v~e~f~~l~~~~~~  178 (191)
T cd01875         136 PITPQQGGALAKQIHAVKYLECSALNQD-GVKEVFAEAVRAVLN  178 (191)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEeCCCCCC-CHHHHHHHHHHHHhc
Confidence            467888999999988 689999999999 999999999998876

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>PTZ00099 rab6; Provisional

Probab=99.91  E-value=7.1e-24  Score=154.99  Aligned_cols=108  Identities=27%  Similarity=0.380  Sum_probs=97.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||++++  ++..||++||++|+|||+++++||+.+..|+..+.... ..++|++|||||+||.+.+.+..+++..++..
T Consensus        36 t~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~-~~~~piilVgNK~DL~~~~~v~~~e~~~~~~~  114 (176)
T PTZ00099         36 TAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNER-GKDVIIALVGNKTDLGDLRKVTYEEGMQKAQE  114 (176)
T ss_pred             CCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCCCHHHHHHHHHH
Confidence            8999884  88899999999999999999999999999999988764 35789999999999987777888899999988


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +++.|++|||++|. ||+++|++|++.+.+.+
T Consensus       115 ~~~~~~e~SAk~g~-nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099        115 YNTMFHETSAKAGH-NIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             cCCEEEEEECCCCC-CHHHHHHHHHHHHHhcc
Confidence            89999999999999 99999999999987633

>KOG0086|consensus

Probab=99.91  E-value=2.1e-24  Score=150.13  Aligned_cols=108  Identities=22%  Similarity=0.214  Sum_probs=101.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  .+++||++|-++++|||+++.+||+.+..|+..++... ++++.+||+|||.||...++|+..++..||.+
T Consensus        65 TAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lA-s~nIvviL~GnKkDL~~~R~VtflEAs~FaqE  143 (214)
T KOG0086|consen   65 TAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQE  143 (214)
T ss_pred             cccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhC-CCcEEEEEeCChhhcChhhhhhHHHHHhhhcc
Confidence            8999995  99999999999999999999999999999999999877 68899999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +.+.+.|+||++|+ ||++.|-..+..|+...
T Consensus       144 nel~flETSa~TGe-NVEEaFl~c~~tIl~kI  174 (214)
T KOG0086|consen  144 NELMFLETSALTGE-NVEEAFLKCARTILNKI  174 (214)
T ss_pred             cceeeeeecccccc-cHHHHHHHHHHHHHHHH
Confidence            99999999999999 99999999998887543

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.91  E-value=9.2e-24  Score=153.73  Aligned_cols=107  Identities=36%  Similarity=0.514  Sum_probs=97.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.||+.+..|+..+.+.....++|++|||||+|+.+.+.++.+++..+++.
T Consensus        57 t~G~~~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~a~~  136 (172)
T cd04141          57 TAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLARE  136 (172)
T ss_pred             CCCchhhHHHhHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccCHHHHHHHHHH
Confidence            7899874  88999999999999999999999999999988887754346799999999999987788999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.|++|||++|. ||+++|++|+..+..
T Consensus       137 ~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~  165 (172)
T cd04141         137 FNCPFFETSAALRH-YIDDAFHGLVREIRR  165 (172)
T ss_pred             hCCEEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999988875

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04131 Rnd Rnd subfamily

Probab=99.91  E-value=7.9e-24  Score=155.00  Aligned_cols=104  Identities=18%  Similarity=0.156  Sum_probs=93.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |||++++  +++.||++||++|+|||+++++||+++ ..|+.++.+..  +++|++|||||+||.+            .+
T Consensus        56 t~G~~~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~--~~~~iilVgnK~DL~~~~~~~~~~~~~~~~  133 (178)
T cd04131          56 TSGSPYYDNVRPLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFC--PNTKVLLVGCKTDLRTDLSTLMELSHQRQA  133 (178)
T ss_pred             CCCchhhhhcchhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHC--CCCCEEEEEEChhhhcChhHHHHHHhcCCC
Confidence            8999874  889999999999999999999999996 78999998876  6899999999999964            24


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCccc-HHHHHHHHHHHHh
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPA-IYQAFDHLLTESR  108 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~-v~~lf~~l~~~i~  108 (173)
                      .|+.+++.++++.+++ .|+||||++|. | |+++|..+++..+
T Consensus       134 ~v~~~e~~~~a~~~~~~~~~E~SA~~~~-~~v~~~F~~~~~~~~  176 (178)
T cd04131         134 PVSYEQGCAIAKQLGAEIYLECSAFTSE-KSVRDIFHVATMACL  176 (178)
T ss_pred             CCCHHHHHHHHHHhCCCEEEECccCcCC-cCHHHHHHHHHHHHh
Confidence            6889999999999996 79999999998 7 9999999998544

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>KOG0081|consensus

Probab=99.90  E-value=5.4e-24  Score=148.99  Aligned_cols=109  Identities=28%  Similarity=0.311  Sum_probs=101.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  ++..||++|-+++++||+++.+||-++..|+..++.+.--.+.-||++|||+||++.++|+.+++..+|.+
T Consensus        74 TAGQERFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~k  153 (219)
T KOG0081|consen   74 TAGQERFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADK  153 (219)
T ss_pred             cccHHHHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhhhHHHHHHHHHH
Confidence            8999994  99999999999999999999999999999999998765446777999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +|++|||+||-+|. ||++..+.|+..+.+..
T Consensus       154 yglPYfETSA~tg~-Nv~kave~LldlvM~Ri  184 (219)
T KOG0081|consen  154 YGLPYFETSACTGT-NVEKAVELLLDLVMKRI  184 (219)
T ss_pred             hCCCeeeeccccCc-CHHHHHHHHHHHHHHHH
Confidence            99999999999999 99999999999887743

>cd04122 Rab14 Rab14 subfamily

Probab=99.90  E-value=8.6e-23  Score=147.30  Aligned_cols=106  Identities=22%  Similarity=0.234  Sum_probs=96.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||+++++||+.+..|+..+.... .+++|+++||||+|+.+.+.++.+++..++..
T Consensus        58 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~  136 (166)
T cd04122          58 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLEAQRDVTYEEAKQFADE  136 (166)
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCcCHHHHHHHHHH
Confidence            7899883  78899999999999999999999999999999887764 36789999999999988888888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.|++|||++|. ||+++|.+++..+.+
T Consensus       137 ~~~~~~e~Sa~~~~-~i~e~f~~l~~~~~~  165 (166)
T cd04122         137 NGLLFLECSAKTGE-NVEDAFLETAKKIYQ  165 (166)
T ss_pred             cCCEEEEEECCCCC-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999988754

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd04126 Rab20 Rab20 subfamily

Probab=99.90  E-value=1.1e-22  Score=153.56  Aligned_cols=108  Identities=19%  Similarity=0.136  Sum_probs=95.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC---------------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH---------------   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~---------------   64 (173)
                      |||++++  ++..||+++|++|+|||+++++||+.+..|+..+.+.. ..++|+||||||+||.+               
T Consensus        51 t~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~-~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~  129 (220)
T cd04126          51 TAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTA-NEDCLFAVVGNKLDLTEEGALAGQEKDAGDRV  129 (220)
T ss_pred             CCCcccchhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccccccccccccc
Confidence            8999884  88999999999999999999999999998887777654 36799999999999975               


Q ss_pred             ----CccCCHHHHHHHhhhcC--------------CeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          65 ----LRQVDESLGRSTAVKYN--------------CTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        65 ----~~~v~~~~~~~~~~~~~--------------~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                          .+.|+.+++..++++.+              +.|+||||++|. ||+++|..+++.+....
T Consensus       130 ~~~~~r~v~~~e~~~~a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~-~V~elf~~i~~~~~~~~  193 (220)
T cd04126         130 SPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEKMCFETSAKTGY-NVDELFEYLFNLVLPLI  193 (220)
T ss_pred             cccccccCCHHHHHHHHHHhCccccccccccccccceEEEeeCCCCC-CHHHHHHHHHHHHHHHH
Confidence                67889999999998876              679999999999 99999999999887633

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>KOG0395|consensus

Probab=99.89  E-value=1.1e-22  Score=150.72  Aligned_cols=107  Identities=35%  Similarity=0.489  Sum_probs=100.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  +...|++++|++++||+++|+.||+.+..+++.|.+......+|+++||||+||...++|+.+++..++..
T Consensus        58 t~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~  137 (196)
T KOG0395|consen   58 TAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARS  137 (196)
T ss_pred             CCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccCHHHHHHHHHh
Confidence            8998874  89999999999999999999999999999999997766567799999999999998899999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|+|+||+.+. +|+++|..|++.+..
T Consensus       138 ~~~~f~E~Sak~~~-~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  138 WGCAFIETSAKLNY-NVDEVFYELVREIRL  166 (196)
T ss_pred             cCCcEEEeeccCCc-CHHHHHHHHHHHHHh
Confidence            99999999999998 999999999998765

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.89  E-value=1.1e-22  Score=151.50  Aligned_cols=104  Identities=20%  Similarity=0.272  Sum_probs=92.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||++++  ++..||+++|++|+|||+++..||+.+..|+.++.+..  .++|++|||||+|+.. +.+..+. ..++..
T Consensus        51 t~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~-~~~~~~  126 (200)
T smart00176       51 TAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDVKD-RKVKAKS-ITFHRK  126 (200)
T ss_pred             CCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhC--CCCCEEEEEECccccc-ccCCHHH-HHHHHH
Confidence            8999884  88999999999999999999999999999999999876  6899999999999864 4555544 467788


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      .++.|++|||++|. ||+++|.+|+..+.+.
T Consensus       127 ~~~~~~e~SAk~~~-~v~~~F~~l~~~i~~~  156 (200)
T smart00176      127 KNLQYYDISAKSNY-NFEKPFLWLARKLIGD  156 (200)
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHhc
Confidence            88999999999999 9999999999988764

Ran is involved in the active transport of proteins through nuclear pores.

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.89  E-value=2.1e-22  Score=149.90  Aligned_cols=109  Identities=20%  Similarity=0.211  Sum_probs=96.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |+|+++.  +++.||+++|++|+|||+++++||+.+..|+.++.....   ..++|+||||||+|+.+.+.+..+++..+
T Consensus        57 t~G~~~~~~~~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~  136 (201)
T cd04107          57 IAGQERFGGMTRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQF  136 (201)
T ss_pred             CCCchhhhhhHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHH
Confidence            8999874  889999999999999999999999999999998875421   25789999999999976677888999999


Q ss_pred             hhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          77 AVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        77 ~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +...+ ..|+++||++|. ||+++|++|++.+....
T Consensus       137 ~~~~~~~~~~e~Sak~~~-~v~e~f~~l~~~l~~~~  171 (201)
T cd04107         137 CKENGFIGWFETSAKEGI-NIEEAMRFLVKNILAND  171 (201)
T ss_pred             HHHcCCceEEEEeCCCCC-CHHHHHHHHHHHHHHhc
Confidence            99988 689999999999 99999999999988743

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.89  E-value=8.8e-23  Score=148.90  Aligned_cols=107  Identities=30%  Similarity=0.366  Sum_probs=97.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||+++++||.++..|+..+.......++|+++||||+|+.+.+.++.+++..++..
T Consensus        70 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~~~~~~~~~~~  149 (180)
T cd04127          70 TAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADK  149 (180)
T ss_pred             CCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccCHHHHHHHHHH
Confidence            7898873  88999999999999999999999999999999998765346789999999999987788888889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++++++||++|. |++++|++|++.+.+
T Consensus       150 ~~~~~~e~Sak~~~-~v~~l~~~l~~~~~~  178 (180)
T cd04127         150 YGIPYFETSAATGT-NVEKAVERLLDLVMK  178 (180)
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999988765

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.89  E-value=1.6e-22  Score=147.57  Aligned_cols=103  Identities=17%  Similarity=0.293  Sum_probs=91.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|++++  ++..||+++|++|+|||+++++||+.+. .|+.++....  +++|+||||||+|+.+.            +
T Consensus        56 t~G~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~l~~~~~~  133 (175)
T cd01874          56 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQK  133 (175)
T ss_pred             CCCccchhhhhhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhChhhHHHhhhccCC
Confidence            8999884  8888999999999999999999999996 5999888765  57999999999998643            5


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.+++..+++..+ +.|+||||++|. ||+++|+.++...
T Consensus       134 ~v~~~~~~~~a~~~~~~~~~e~SA~tg~-~v~~~f~~~~~~~  174 (175)
T cd01874         134 PITPETGEKLARDLKAVKYVECSALTQK-GLKNVFDEAILAA  174 (175)
T ss_pred             CcCHHHHHHHHHHhCCcEEEEecCCCCC-CHHHHHHHHHHHh
Confidence            678888999998887 689999999999 9999999998754

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04117 Rab15 Rab15 subfamily

Probab=99.89  E-value=2.3e-22  Score=144.65  Aligned_cols=103  Identities=26%  Similarity=0.361  Sum_probs=94.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++++|||+++++||+.+..|+.++.... ..++|+++||||+|+.+.+.+..+++..+++.
T Consensus        56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~  134 (161)
T cd04117          56 TAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYA-PEGVQKILIGNKADEEQKRQVGDEQGNKLAKE  134 (161)
T ss_pred             CCCcHhHHhhHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccCCCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999988765 35799999999999988888888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      +++.|++|||++|. ||+++|.+|++.
T Consensus       135 ~~~~~~e~Sa~~~~-~v~~~f~~l~~~  160 (161)
T cd04117         135 YGMDFFETSACTNS-NIKESFTRLTEL  160 (161)
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHhh
Confidence            99999999999999 999999999864

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.89  E-value=2.1e-22  Score=144.79  Aligned_cols=101  Identities=19%  Similarity=0.424  Sum_probs=89.0

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC--CCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE--HLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++   ..|++++|++++|||+++++||+.+..|+.++.......++|++|||||+|+.  ..+.++.+++..+++.
T Consensus        54 ~~g~~~---~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~  130 (158)
T cd04103          54 EGGAPD---AQFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCAD  130 (158)
T ss_pred             CCCCCc---hhHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHH
Confidence            788874   46889999999999999999999999999999887644679999999999985  3578888899999987


Q ss_pred             c-CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 Y-NCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      . ++.|+||||++|. ||+++|..+++.
T Consensus       131 ~~~~~~~e~SAk~~~-~i~~~f~~~~~~  157 (158)
T cd04103         131 MKRCSYYETCATYGL-NVERVFQEAAQK  157 (158)
T ss_pred             hCCCcEEEEecCCCC-CHHHHHHHHHhh
Confidence            6 4899999999999 999999999864

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>KOG0095|consensus

Probab=99.89  E-value=3.9e-23  Score=143.33  Aligned_cols=106  Identities=24%  Similarity=0.281  Sum_probs=99.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  ++.+||+.|+++|+|||++-..||+-+..|+.+|.++. ...+-.|+||||+|+.+.++|+...+++|++.
T Consensus        63 tagqerfrsitqsyyrsahalilvydiscqpsfdclpewlreie~ya-n~kvlkilvgnk~d~~drrevp~qigeefs~~  141 (213)
T KOG0095|consen   63 TAGQERFRSITQSYYRSAHALILVYDISCQPSFDCLPEWLREIEQYA-NNKVLKILVGNKIDLADRREVPQQIGEEFSEA  141 (213)
T ss_pred             ccchHHHHHHHHHHhhhcceEEEEEecccCcchhhhHHHHHHHHHHh-hcceEEEeeccccchhhhhhhhHHHHHHHHHh
Confidence            8999995  99999999999999999999999999999999999998 46788899999999999999999999999998


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...-|+|+||++.+ ||+.+|..++..+..
T Consensus       142 qdmyfletsakea~-nve~lf~~~a~rli~  170 (213)
T KOG0095|consen  142 QDMYFLETSAKEAD-NVEKLFLDLACRLIS  170 (213)
T ss_pred             hhhhhhhhcccchh-hHHHHHHHHHHHHHH
Confidence            88889999999999 999999999987775

>cd04134 Rho3 Rho3 subfamily

Probab=99.89  E-value=4e-22  Score=147.10  Aligned_cols=105  Identities=22%  Similarity=0.233  Sum_probs=91.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLR------------   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------   66 (173)
                      |+|+++.  ++..||+++|++|+|||+++++||+.+. .|+..+....  +++|++|||||+||.+.+            
T Consensus        55 t~G~~~~~~l~~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~--~~~piilvgNK~Dl~~~~~~~~~~~~~~~~  132 (189)
T cd04134          55 TAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC--PGVKLVLVALKCDLREARNERDDLQRYGKH  132 (189)
T ss_pred             CCCChhccccccccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccChhhHHHHhhccCC
Confidence            7999884  8889999999999999999999999986 5999988765  579999999999997543            


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+..+++..++...+ +.|++|||++|. ||+++|.+|++.+..
T Consensus       133 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~-~v~e~f~~l~~~~~~  175 (189)
T cd04134         133 TISYEEGLAVAKRINALRYLECSAKLNR-GVNEAFTEAARVALN  175 (189)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEccCCcCC-CHHHHHHHHHHHHhc
Confidence            356677888888777 789999999999 999999999998875

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd04111 Rab39 Rab39 subfamily

Probab=99.89  E-value=7.8e-22  Score=148.11  Aligned_cols=108  Identities=22%  Similarity=0.275  Sum_probs=97.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||+++++||+++..|+.++........+|++|||||+|+...+.+..+++..+++.
T Consensus        59 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~~~~~~~~~~~  138 (211)
T cd04111          59 TAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKD  138 (211)
T ss_pred             CCcchhHHHHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccCHHHHHHHHHH
Confidence            7898874  78899999999999999999999999999999998765445688999999999987788888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +++.|+++||++|. ||+++|++|++.+.+.
T Consensus       139 ~~~~~~e~Sak~g~-~v~e~f~~l~~~~~~~  168 (211)
T cd04111         139 LGMKYIETSARTGD-NVEEAFELLTQEIYER  168 (211)
T ss_pred             hCCEEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999988764

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04136 Rap_like Rap-like subfamily

Probab=99.89  E-value=4e-22  Score=142.81  Aligned_cols=105  Identities=28%  Similarity=0.429  Sum_probs=94.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..|++++|++++|||++++++|+.+..|+..+.......++|+++||||+|+.+.+.+..+++..++..
T Consensus        56 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  135 (163)
T cd04136          56 TAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQ  135 (163)
T ss_pred             CCCccccchHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceecHHHHHHHHHH
Confidence            8999884  88999999999999999999999999999999998765446799999999999977677777788888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ++.+++++||++|. ||+++|.+|++.+
T Consensus       136 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~~  162 (163)
T cd04136         136 WGCPFYETSAKSKI-NVDEVFADLVRQI  162 (163)
T ss_pred             cCCeEEEecCCCCC-CHHHHHHHHHHhc
Confidence            88899999999999 9999999998764

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>KOG0097|consensus

Probab=99.88  E-value=2.1e-22  Score=138.71  Aligned_cols=109  Identities=21%  Similarity=0.227  Sum_probs=102.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||++  .+++||++|-+.+.|||++...+++++..|+...+... .++..++++|||.||...+.|+.+++..|+++
T Consensus        67 tagqerfravtrsyyrgaagalmvyditrrstynhlsswl~dar~lt-npnt~i~lignkadle~qrdv~yeeak~faee  145 (215)
T KOG0097|consen   67 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIFLIGNKADLESQRDVTYEEAKEFAEE  145 (215)
T ss_pred             cccHHHHHHHHHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccC-CCceEEEEecchhhhhhcccCcHHHHHHHHhh
Confidence            8999995  99999999999999999999999999999999988876 47888999999999999999999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      +|+.|+|+|||+|. ||++.|-..+..|+++..
T Consensus       146 ngl~fle~saktg~-nvedafle~akkiyqniq  177 (215)
T KOG0097|consen  146 NGLMFLEASAKTGQ-NVEDAFLETAKKIYQNIQ  177 (215)
T ss_pred             cCeEEEEecccccC-cHHHHHHHHHHHHHHhhh
Confidence            99999999999999 999999999999987544

>cd04144 Ras2 Ras2 subfamily

Probab=99.88  E-value=4.1e-22  Score=147.12  Aligned_cols=107  Identities=29%  Similarity=0.416  Sum_probs=96.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|+++.  ++..||+++|++|+|||+++.+||+.+..|+..+.....  ..++|++|||||+|+.+.+.+...++..++
T Consensus        54 t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~  133 (190)
T cd04144          54 TAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALA  133 (190)
T ss_pred             CCCchhhHHHHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHH
Confidence            7999884  888999999999999999999999999999998876542  257899999999999877888888888888


Q ss_pred             hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..+++.|+++||++|. ||+++|.++++.+.+
T Consensus       134 ~~~~~~~~e~SAk~~~-~v~~l~~~l~~~l~~  164 (190)
T cd04144         134 RRLGCEFIEASAKTNV-NVERAFYTLVRALRQ  164 (190)
T ss_pred             HHhCCEEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence            8889999999999999 999999999988765

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04175 Rap1 Rap1 subgroup

Probab=99.88  E-value=5.5e-22  Score=142.66  Aligned_cols=105  Identities=25%  Similarity=0.416  Sum_probs=94.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||+++..+|+.+..|+..+.......++|++|||||+|+.+.+.+..+++..+++.
T Consensus        56 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  135 (164)
T cd04175          56 TAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ  135 (164)
T ss_pred             CCCcccchhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcHHHHHHHHHH
Confidence            8999874  89999999999999999999999999999999988765457899999999999987777777788888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ++++|+++||++|. ||+++|.+|++.+
T Consensus       136 ~~~~~~~~Sa~~~~-~v~~~~~~l~~~l  162 (164)
T cd04175         136 WGCAFLETSAKAKI-NVNEIFYDLVRQI  162 (164)
T ss_pred             hCCEEEEeeCCCCC-CHHHHHHHHHHHh
Confidence            88999999999999 9999999999765

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>PTZ00369 Ras-like protein; Provisional

Probab=99.88  E-value=5.3e-22  Score=146.40  Aligned_cols=108  Identities=29%  Similarity=0.391  Sum_probs=97.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.+.....++|+++||||+|+.+.+.+..+++..++..
T Consensus        60 t~G~~~~~~l~~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~~~~~~~~~  139 (189)
T PTZ00369         60 TAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKS  139 (189)
T ss_pred             CCCCccchhhHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence            8999984  88899999999999999999999999999999988765446899999999999987777888888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      ++++|++|||++|. ||+++|.+|++.+...
T Consensus       140 ~~~~~~e~Sak~~~-gi~~~~~~l~~~l~~~  169 (189)
T PTZ00369        140 FGIPFLETSAKQRV-NVDEAFYELVREIRKY  169 (189)
T ss_pred             hCCEEEEeeCCCCC-CHHHHHHHHHHHHHHH
Confidence            88999999999999 9999999999988763

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.88  E-value=1e-21  Score=148.32  Aligned_cols=106  Identities=20%  Similarity=0.183  Sum_probs=92.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|++++  +++.||+++|++|+|||+++++||+.+ ..|..++....  +++|+||||||+||...            .
T Consensus        56 t~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~--~~~piiLVgnK~DL~~~~~~~~~~~~~~~~  133 (222)
T cd04173          56 TSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC--PNAKVVLVGCKLDMRTDLATLRELSKQRLI  133 (222)
T ss_pred             CCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEECcccccchhhhhhhhhccCC
Confidence            8999874  889999999999999999999999999 56888777655  68999999999999642            1


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCccc-HHHHHHHHHHHHhcC
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPA-IYQAFDHLLTESRGG  110 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~-v~~lf~~l~~~i~~~  110 (173)
                      .++.+++..+++..++ .|+||||+++. + |+++|..++...+..
T Consensus       134 pIs~e~g~~~ak~~~~~~y~E~SAk~~~-~~V~~~F~~~~~~~~~~  178 (222)
T cd04173         134 PVTHEQGTVLAKQVGAVSYVECSSRSSE-RSVRDVFHVATVASLGR  178 (222)
T ss_pred             ccCHHHHHHHHHHcCCCEEEEcCCCcCC-cCHHHHHHHHHHHHHhc
Confidence            3778899999999995 89999999988 6 999999999877653

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.88  E-value=4.9e-22  Score=144.90  Aligned_cols=102  Identities=22%  Similarity=0.306  Sum_probs=90.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  +++.|++++|++|+|||+++++||+.+. .|+..+....  +++|++|||||+||.+.            +
T Consensus        56 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  133 (174)
T cd01871          56 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT  133 (174)
T ss_pred             CCCchhhhhhhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhccChhhHHHHhhccCC
Confidence            8999884  8889999999999999999999999996 6988887754  57999999999999642            3


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .++.+++..++++++ +.|+||||++|. ||+++|+.+++.
T Consensus       134 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-~i~~~f~~l~~~  173 (174)
T cd01871         134 PITYPQGLAMAKEIGAVKYLECSALTQK-GLKTVFDEAIRA  173 (174)
T ss_pred             CCCHHHHHHHHHHcCCcEEEEecccccC-CHHHHHHHHHHh
Confidence            578899999999988 489999999999 999999999864

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04109 Rab28 Rab28 subfamily

Probab=99.88  E-value=7.3e-22  Score=148.56  Aligned_cols=108  Identities=24%  Similarity=0.247  Sum_probs=97.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|++.+  +...|+++||++|+|||+++++||+++..|+..+.+...  ..++|+++||||+|+.+.+.+..+++..++
T Consensus        57 t~G~~~~~~l~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~  136 (215)
T cd04109          57 IGGQSIGGKMLDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFA  136 (215)
T ss_pred             CCCcHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHH
Confidence            7898773  888999999999999999999999999999999987652  245789999999999877888888999999


Q ss_pred             hhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      ..+++.++++||++|. ||+++|++|+..+...
T Consensus       137 ~~~~~~~~~iSAktg~-gv~~lf~~l~~~l~~~  168 (215)
T cd04109         137 QANGMESCLVSAKTGD-RVNLLFQQLAAELLGV  168 (215)
T ss_pred             HHcCCEEEEEECCCCC-CHHHHHHHHHHHHHhc
Confidence            9999999999999999 9999999999988764

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04176 Rap2 Rap2 subgroup

Probab=99.88  E-value=1.2e-21  Score=140.71  Aligned_cols=105  Identities=28%  Similarity=0.490  Sum_probs=93.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..|++++|++|+|||+++++||+++..|+..+.+.....++|+++||||+|+...+.+...++..++..
T Consensus        56 t~G~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~~~~~~~~~~~  135 (163)
T cd04176          56 TAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEE  135 (163)
T ss_pred             CCCcccccchHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccCHHHHHHHHHH
Confidence            8999884  89999999999999999999999999999999988765346899999999999976677777778888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.++++||++|. |++++|.++++.+
T Consensus       136 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~l  162 (163)
T cd04176         136 WGCPFMETSAKSKT-MVNELFAEIVRQM  162 (163)
T ss_pred             hCCEEEEecCCCCC-CHHHHHHHHHHhc
Confidence            88899999999999 9999999998754

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04110 Rab35 Rab35 subfamily

Probab=99.87  E-value=2.1e-21  Score=144.39  Aligned_cols=110  Identities=20%  Similarity=0.213  Sum_probs=98.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++..  ++..|++++|++|+|||+++++||+.+..|+..+....  ..+|++|||||+|+.+...+..+++..++..
T Consensus        62 ~~G~~~~~~~~~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~--~~~piivVgNK~Dl~~~~~~~~~~~~~~~~~  139 (199)
T cd04110          62 TAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC--DDVCKVLVGNKNDDPERKVVETEDAYKFAGQ  139 (199)
T ss_pred             CCCchhHHHHHHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence            8899874  88999999999999999999999999999999988765  6799999999999987777788888889888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSG  114 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~  114 (173)
                      .++.||++||++|. ||+++|++|+..+.......
T Consensus       140 ~~~~~~e~Sa~~~~-gi~~lf~~l~~~~~~~~~~~  173 (199)
T cd04110         140 MGISLFETSAKENI-NVEEMFNCITELVLRAKKDN  173 (199)
T ss_pred             cCCEEEEEECCCCc-CHHHHHHHHHHHHHHhhhcc
Confidence            89999999999999 99999999999988754433

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd01865 Rab3 Rab3 subfamily

Probab=99.87  E-value=1.6e-21  Score=140.63  Aligned_cols=106  Identities=28%  Similarity=0.350  Sum_probs=95.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++++|||++++++|+.+..|+..+.... ..++|+++||||+|+.+.+.+..+++..++..
T Consensus        57 t~g~~~~~~~~~~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~  135 (165)
T cd01865          57 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVILVGNKCDMEDERVVSSERGRQLADQ  135 (165)
T ss_pred             CCChHHHHHHHHHHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence            7898873  88899999999999999999999999999999987765 35789999999999987777778888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. ||+++|++|+..+.+
T Consensus       136 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~  164 (165)
T cd01865         136 LGFEFFEASAKENI-NVKQVFERLVDIICD  164 (165)
T ss_pred             cCCEEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence            89999999999999 999999999987654

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>PLN03108 Rab family protein; Provisional

Probab=99.87  E-value=3.9e-21  Score=144.16  Aligned_cols=107  Identities=26%  Similarity=0.333  Sum_probs=96.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.++.+++..+++.
T Consensus        62 t~G~~~~~~~~~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~~~~~  140 (210)
T PLN03108         62 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHA-NANMTIMLIGNKCDLAHRRAVSTEEGEQFAKE  140 (210)
T ss_pred             CCCcHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccCCCHHHHHHHHHH
Confidence            7888773  78899999999999999999999999999999887664 35799999999999988778888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +++.|+++||+++. ||+++|.++++.+++.
T Consensus       141 ~~~~~~e~Sa~~~~-~v~e~f~~l~~~~~~~  170 (210)
T PLN03108        141 HGLIFMEASAKTAQ-NVEEAFIKTAAKIYKK  170 (210)
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999988764

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.87  E-value=1.9e-21  Score=140.49  Aligned_cols=106  Identities=31%  Similarity=0.400  Sum_probs=95.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..++++||++|+|||++++++|+.+..|+..+.... ..++|+++||||+|+.+.+.+..+++..++..
T Consensus        59 ~~g~~~~~~~~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~  137 (167)
T cd01867          59 TAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHA-SEDVERMLVGNKCDMEEKRVVSKEEGEALADE  137 (167)
T ss_pred             CCchHHHHHHHHHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH
Confidence            7898873  77889999999999999999999999999999998764 36799999999999987777888888889998


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+++|||++|. ||+++|+++++.+..
T Consensus       138 ~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~  166 (167)
T cd01867         138 YGIKFLETSAKANI-NVEEAFFTLAKDIKK  166 (167)
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence            89999999999999 999999999988764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.87  E-value=1.5e-21  Score=139.92  Aligned_cols=105  Identities=24%  Similarity=0.375  Sum_probs=97.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...+++++|++|+|||+++++||+.+..|+..+..... .++|++|||||+|+.+.+.++.+++..++..
T Consensus        55 ~~g~~~~~~~~~~~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~-~~~~iivvg~K~D~~~~~~v~~~~~~~~~~~  133 (162)
T PF00071_consen   55 TSGQERFDSLRDIFYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKP-EDIPIIVVGNKSDLSDEREVSVEEAQEFAKE  133 (162)
T ss_dssp             ETTSGGGHHHHHHHHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHST-TTSEEEEEEETTTGGGGSSSCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc-ccccceeeeccccccccccchhhHHHHHHHH
Confidence            6788774  778899999999999999999999999999999999872 4799999999999988889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ++..|++|||+++. ||.++|..+++.+.
T Consensus       134 ~~~~~~e~Sa~~~~-~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  134 LGVPYFEVSAKNGE-NVKEIFQELIRKIL  161 (162)
T ss_dssp             TTSEEEEEBTTTTT-THHHHHHHHHHHHH
T ss_pred             hCCEEEEEECCCCC-CHHHHHHHHHHHHh
Confidence            99999999999999 99999999998875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.87  E-value=1.2e-21  Score=147.83  Aligned_cols=104  Identities=22%  Similarity=0.284  Sum_probs=91.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..||+++|++|+|||+++++||+.+..|+.++....  .++|++|||||+|+.. +.+..+++ .++..
T Consensus        69 t~G~~~~~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~--~~~piilvgNK~Dl~~-~~v~~~~~-~~~~~  144 (219)
T PLN03071         69 TAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKN-RQVKAKQV-TFHRK  144 (219)
T ss_pred             CCCchhhhhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhhhh-ccCCHHHH-HHHHh
Confidence            8999884  88899999999999999999999999999999998775  6799999999999964 44555555 67777


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      .++.||+|||++|. ||+++|.+|+..+.+.
T Consensus       145 ~~~~~~e~SAk~~~-~i~~~f~~l~~~~~~~  174 (219)
T PLN03071        145 KNLQYYEISAKSNY-NFEKPFLYLARKLAGD  174 (219)
T ss_pred             cCCEEEEcCCCCCC-CHHHHHHHHHHHHHcC
Confidence            88999999999999 9999999999998764

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.87  E-value=2e-21  Score=140.90  Aligned_cols=105  Identities=19%  Similarity=0.256  Sum_probs=92.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..+++++|++|+|||+++++||+.+. .|+..+....  +++|++|||||+|+...            +
T Consensus        53 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  130 (174)
T smart00174       53 TAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC--PNTPIILVGTKLDLREDKSTLRELSKQKQE  130 (174)
T ss_pred             CCCCcccchhchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEecChhhhhChhhhhhhhcccCC
Confidence            8999884  8888999999999999999999999996 5999988765  68999999999999653            2


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++..++...+. .|++|||++|. ||+++|..+++.+.+
T Consensus       131 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~lf~~l~~~~~~  173 (174)
T smart00174      131 PVTYEQGEALAKRIGAVKYLECSALTQE-GVREVFEEAIRAALN  173 (174)
T ss_pred             CccHHHHHHHHHHcCCcEEEEecCCCCC-CHHHHHHHHHHHhcC
Confidence            3778888899999986 89999999999 999999999987754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04112 Rab26 Rab26 subfamily

Probab=99.87  E-value=2.8e-21  Score=142.75  Aligned_cols=111  Identities=25%  Similarity=0.290  Sum_probs=99.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+++..|+..+.... ..++|+++||||+|+...+.+..+++..++..
T Consensus        57 t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~~~~~~~~~l~~~  135 (191)
T cd04112          57 TAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYA-QEDVVIMLLGNKADMSGERVVKREDGERLAKE  135 (191)
T ss_pred             CCCcHHHHHhhHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccchhccccCHHHHHHHHHH
Confidence            7898874  77889999999999999999999999999999998875 35799999999999977777888888889988


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSG  114 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~  114 (173)
                      +++.|+++||++|. ||+++|.+|++.+.+....+
T Consensus       136 ~~~~~~e~Sa~~~~-~v~~l~~~l~~~~~~~~~~~  169 (191)
T cd04112         136 YGVPFMETSAKTGL-NVELAFTAVAKELKHRKYEQ  169 (191)
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHHhcccc
Confidence            89999999999999 99999999999998765443

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04128 Spg1 Spg1p

Probab=99.87  E-value=2.1e-21  Score=142.61  Aligned_cols=109  Identities=16%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-----CccCCHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-----LRQVDESLGR   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-----~~~v~~~~~~   74 (173)
                      |+|++++  ++..|+++||++++|||+++++||+++..|+.++.... ...+| |+||||+|+..     ......+++.
T Consensus        56 t~G~~~~~~~~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~-~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~  133 (182)
T cd04128          56 LGGQREFINMLPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFN-KTAIP-ILVGTKYDLFADLPPEEQEEITKQAR  133 (182)
T ss_pred             CCCchhHHHhhHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCE-EEEEEchhccccccchhhhhhHHHHH
Confidence            7899874  88899999999999999999999999999999998765 24566 68999999842     1112245677


Q ss_pred             HHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        75 ~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      .+++..++.+++|||++|. ||+++|.++++.+.+-+..
T Consensus       134 ~~a~~~~~~~~e~SAk~g~-~v~~lf~~l~~~l~~~~~~  171 (182)
T cd04128         134 KYAKAMKAPLIFCSTSHSI-NVQKIFKIVLAKAFDLPLT  171 (182)
T ss_pred             HHHHHcCCEEEEEeCCCCC-CHHHHHHHHHHHHHhcCCC
Confidence            8888889999999999999 9999999999988874433

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.87  E-value=3.1e-21  Score=139.01  Aligned_cols=106  Identities=32%  Similarity=0.361  Sum_probs=95.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||+++++||+.+..|+..+.... ..++|+++||||+|+...+.+..+++..++..
T Consensus        58 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~-~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~  136 (166)
T cd01869          58 TAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTDKRVVDYSEAQEFADE  136 (166)
T ss_pred             CCCcHhHHHHHHHHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEEChhcccccCCCHHHHHHHHHH
Confidence            7898874  78899999999999999999999999999999998765 35789999999999987777888889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++++|+++||++|. ||+++|.+|++.+..
T Consensus       137 ~~~~~~~~Sa~~~~-~v~~~~~~i~~~~~~  165 (166)
T cd01869         137 LGIPFLETSAKNAT-NVEQAFMTMAREIKK  165 (166)
T ss_pred             cCCeEEEEECCCCc-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999987753

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.87  E-value=3.1e-21  Score=138.50  Aligned_cols=107  Identities=25%  Similarity=0.357  Sum_probs=95.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC----CCCcEEEEEeCCCCCCCccCCHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV----NNVPVMLLANKLDLEHLRQVDESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~----~~~piilv~NK~Dl~~~~~v~~~~~~~   75 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+..|+.++......    .++|+++|+||+|+.+.+.+..+++..
T Consensus        56 t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~  135 (168)
T cd04119          56 LSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRL  135 (168)
T ss_pred             CCccHHHHHHHHHHhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHH
Confidence            7898773  8889999999999999999999999999999999887632    569999999999997667778888888


Q ss_pred             HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++...++.++++||++|. ||+++|++|++.+.+
T Consensus       136 ~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~l~~  168 (168)
T cd04119         136 WAESKGFKYFETSACTGE-GVNEMFQTLFSSIVD  168 (168)
T ss_pred             HHHHcCCeEEEEECCCCC-CHHHHHHHHHHHHhC
Confidence            888888999999999999 999999999987753

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04140 ARHI_like ARHI subfamily

Probab=99.87  E-value=3.6e-21  Score=138.75  Aligned_cols=103  Identities=28%  Similarity=0.454  Sum_probs=91.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|+++.  +...+++++|++|+|||+++++||+.+..|+..+.+...  ..++|++|||||+|+...+++..+++..++
T Consensus        56 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  135 (165)
T cd04140          56 TTGSHQFPAMQRLSISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACA  135 (165)
T ss_pred             CCCCCcchHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHH
Confidence            8999884  778899999999999999999999999999888876542  257999999999999876778888888888


Q ss_pred             hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      ..+++.|++|||++|. ||+++|++|++
T Consensus       136 ~~~~~~~~e~SA~~g~-~v~~~f~~l~~  162 (165)
T cd04140         136 TEWNCAFMETSAKTNH-NVQELFQELLN  162 (165)
T ss_pred             HHhCCcEEEeecCCCC-CHHHHHHHHHh
Confidence            8888999999999999 99999999985

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.86  E-value=4.7e-21  Score=137.39  Aligned_cols=105  Identities=28%  Similarity=0.401  Sum_probs=94.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++++|||++++.+|+.+..|+..+.+.....++|++||+||+|+...+.+..+++..+++.
T Consensus        57 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~~~~~~~~~~  136 (164)
T cd04145          57 TAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARK  136 (164)
T ss_pred             CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceecHHHHHHHHHH
Confidence            8999884  88899999999999999999999999999999988765346799999999999987777777788888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.++++||++|. ||+++|++|++.+
T Consensus       137 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~  163 (164)
T cd04145         137 LKIPYIETSAKDRL-NVDKAFHDLVRVI  163 (164)
T ss_pred             cCCcEEEeeCCCCC-CHHHHHHHHHHhh
Confidence            88999999999999 9999999998754

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.86  E-value=6.8e-21  Score=136.76  Aligned_cols=106  Identities=30%  Similarity=0.480  Sum_probs=95.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|...+.+.....++|+++||||+|+...+.+..+++..+++.
T Consensus        55 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~  134 (164)
T smart00173       55 TAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQ  134 (164)
T ss_pred             CCCcccchHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEcHHHHHHHHHH
Confidence            8999884  88899999999999999999999999999998887765445799999999999987677777888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      .+..|+++||++|. |++++|++|++.+.
T Consensus       135 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~  162 (164)
T smart00173      135 WGCPFLETSAKERV-NVDEAFYDLVREIR  162 (164)
T ss_pred             cCCEEEEeecCCCC-CHHHHHHHHHHHHh
Confidence            88999999999999 99999999998765

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.86  E-value=3.7e-21  Score=137.78  Aligned_cols=102  Identities=25%  Similarity=0.354  Sum_probs=92.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++++|||++++++|+.+..|+..+....  .++|+++|+||+|+...+.++.+++..++..
T Consensus        58 ~~G~~~~~~~~~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~--~~~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~  135 (162)
T cd04106          58 TAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC--GDIPMVLVQTKIDLLDQAVITNEEAEALAKR  135 (162)
T ss_pred             CCchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhcccccCCCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999987655  6899999999999987778888889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .+++++++||++|. |++++|++|+..
T Consensus       136 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~  161 (162)
T cd04106         136 LQLPLFRTSVKDDF-NVTELFEYLAEK  161 (162)
T ss_pred             cCCeEEEEECCCCC-CHHHHHHHHHHh
Confidence            99999999999999 999999999764

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.86  E-value=5.8e-21  Score=138.14  Aligned_cols=106  Identities=22%  Similarity=0.283  Sum_probs=91.3

Q ss_pred             CCCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           1 MTIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         1 ~TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      .|+|+++.  ++..|+.++|++|+|||+++++||+.+..|+.++....  .++|+++||||+|+.. +.+.. +...++.
T Consensus        55 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piiiv~nK~Dl~~-~~~~~-~~~~~~~  130 (166)
T cd00877          55 DTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--GNIPIVLCGNKVDIKD-RKVKA-KQITFHR  130 (166)
T ss_pred             ECCCChhhccccHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEEchhccc-ccCCH-HHHHHHH
Confidence            38999883  78899999999999999999999999999999998876  4899999999999973 44433 3456677


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ..++.|+++||++|. ||+++|.+|++.+.+.+
T Consensus       131 ~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~~~  162 (166)
T cd00877         131 KKNLQYYEISAKSNY-NFEKPFLWLARKLLGNP  162 (166)
T ss_pred             HcCCEEEEEeCCCCC-ChHHHHHHHHHHHHhcc
Confidence            778899999999999 99999999999987643

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.86  E-value=6.2e-21  Score=138.55  Aligned_cols=107  Identities=20%  Similarity=0.188  Sum_probs=92.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~~~~   77 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+..|+.++.+...+.++|+++||||+|+.+...  +..+++..++
T Consensus        56 t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~  135 (170)
T cd04108          56 TAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLA  135 (170)
T ss_pred             CCChHHHHhhHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHH
Confidence            7899874  88999999999999999999999999999999987654345678999999999965433  3466777888


Q ss_pred             hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++..|+++||++|. ||+++|..|+..+.+
T Consensus       136 ~~~~~~~~e~Sa~~g~-~v~~lf~~l~~~~~~  166 (170)
T cd04108         136 AEMQAEYWSVSALSGE-NVREFFFRVAALTFE  166 (170)
T ss_pred             HHcCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            8888899999999999 999999999988765

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04125 RabA_like RabA-like subfamily

Probab=99.86  E-value=1.3e-20  Score=138.71  Aligned_cols=106  Identities=26%  Similarity=0.288  Sum_probs=96.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..+++++|++|+|||++++++|+.+..|+.++.... ...+|+++||||+|+.+.+.+..+++..++..
T Consensus        56 t~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~-~~~~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~  134 (188)
T cd04125          56 TNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYA-RENVIKVIVANKSDLVNNKVVDSNIAKSFCDS  134 (188)
T ss_pred             CCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECCCCcccccCCHHHHHHHHHH
Confidence            7888773  88899999999999999999999999999999998765 35689999999999987788888888889888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.|+++||++|. ||+++|.+|++.+..
T Consensus       135 ~~~~~~evSa~~~~-~i~~~f~~l~~~~~~  163 (188)
T cd04125         135 LNIPFFETSAKQSI-NVEEAFILLVKLIIK  163 (188)
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            89999999999999 999999999998875

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>KOG4252|consensus

Probab=99.86  E-value=2.2e-21  Score=138.40  Aligned_cols=108  Identities=22%  Similarity=0.279  Sum_probs=101.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      ||||+++  ++..||++|.+.++||+.+|..||+.+..|++++....  .++|.++|-||+||.+..+++..+++.+++.
T Consensus        76 tagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~--~~IPtV~vqNKIDlveds~~~~~evE~lak~  153 (246)
T KOG4252|consen   76 TAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKET--ERIPTVFVQNKIDLVEDSQMDKGEVEGLAKK  153 (246)
T ss_pred             hccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHh--ccCCeEEeeccchhhHhhhcchHHHHHHHHH
Confidence            8999995  99999999999999999999999999999999999887  7899999999999999899999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      +.+.++.+|++... ||.++|..|++.+.+...
T Consensus       154 l~~RlyRtSvked~-NV~~vF~YLaeK~~q~~k  185 (246)
T KOG4252|consen  154 LHKRLYRTSVKEDF-NVMHVFAYLAEKLTQQKK  185 (246)
T ss_pred             hhhhhhhhhhhhhh-hhHHHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998876443

>PLN03110 Rab GTPase; Provisional

Probab=99.86  E-value=7.2e-21  Score=143.31  Aligned_cols=106  Identities=31%  Similarity=0.429  Sum_probs=97.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++||||+|+...+.+..+++..++..
T Consensus        68 t~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~piiiv~nK~Dl~~~~~~~~~~~~~l~~~  146 (216)
T PLN03110         68 TAGQERYRAITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHA-DSNIVIMMAGNKSDLNHLRSVAEEDGQALAEK  146 (216)
T ss_pred             CCCcHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-CCCCeEEEEEEChhcccccCCCHHHHHHHHHH
Confidence            7899873  88899999999999999999999999999999988765 35799999999999988788888899999998


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.|+++||++|. ||+++|++|+..+.+
T Consensus       147 ~~~~~~e~SA~~g~-~v~~lf~~l~~~i~~  175 (216)
T PLN03110        147 EGLSFLETSALEAT-NVEKAFQTILLEIYH  175 (216)
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            89999999999999 999999999998876

>cd01868 Rab11_like Rab11-like

Probab=99.85  E-value=1e-20  Score=136.08  Aligned_cols=104  Identities=34%  Similarity=0.456  Sum_probs=93.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|+++++++|+|||++++.+|+.+..|+.++.+.. ..++|++|||||+|+...+.+..++...++..
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~  137 (165)
T cd01868          59 TAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEK  137 (165)
T ss_pred             CCChHHHHHHHHHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccccCCHHHHHHHHHH
Confidence            7888873  88899999999999999999999999999999998876 34699999999999987777888888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.++++||++|. |++++|++|+..+
T Consensus       138 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~i  164 (165)
T cd01868         138 NGLSFIETSALDGT-NVEEAFKQLLTEI  164 (165)
T ss_pred             cCCEEEEEECCCCC-CHHHHHHHHHHHh
Confidence            88999999999999 9999999998765

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.85  E-value=9.4e-21  Score=139.13  Aligned_cols=107  Identities=22%  Similarity=0.233  Sum_probs=93.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC----ccCCHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL----RQVDESLGR   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~----~~v~~~~~~   74 (173)
                      |||+++.  ++..|++++|++|+|||+++++||+++. .|+..+....  +++|+|+||||+|+...    +.+..+++.
T Consensus        56 t~G~~~~~~~~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~  133 (187)
T cd04132          56 TAGQEEYDRLRPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFC--PGTPIMLVGLKTDLRKDKNLDRKVTPAQAE  133 (187)
T ss_pred             CCCchhHHHHHHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeChhhhhCccccCCcCHHHHH
Confidence            8999874  8888999999999999999999999996 5998887654  67999999999999653    356788888


Q ss_pred             HHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          75 STAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        75 ~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .++..+++ .++++||++|. ||+++|..+++.+....
T Consensus       134 ~~~~~~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~~~  170 (187)
T cd04132         134 SVAKKQGAFAYLECSAKTME-NVEEVFDTAIEEALKKE  170 (187)
T ss_pred             HHHHHcCCcEEEEccCCCCC-CHHHHHHHHHHHHHhhh
Confidence            99999887 89999999999 99999999999887643

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01866 Rab2 Rab2 subfamily

Probab=99.85  E-value=1.4e-20  Score=136.08  Aligned_cols=106  Identities=28%  Similarity=0.352  Sum_probs=95.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...|++++|++|+|||+++++||+.+..|+.++.... .+++|++|||||+|+.+.+.++.+++..++..
T Consensus        60 t~G~~~~~~~~~~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~pvivv~nK~Dl~~~~~~~~~~~~~~~~~  138 (168)
T cd01866          60 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-NSNMTIMLIGNKCDLESRREVSYEEGEAFAKE  138 (168)
T ss_pred             CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccCCCHHHHHHHHHH
Confidence            7898873  78889999999999999999999999999999998765 36799999999999987677888888889988


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.|+++||+++. ||+++|.++++.+.+
T Consensus       139 ~~~~~~e~Sa~~~~-~i~~~~~~~~~~~~~  167 (168)
T cd01866         139 HGLIFMETSAKTAS-NVEEAFINTAKEIYE  167 (168)
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence            89999999999999 999999999988765

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.85  E-value=1.7e-20  Score=133.93  Aligned_cols=104  Identities=25%  Similarity=0.401  Sum_probs=92.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++++|||+++..+|+.+..|+..+.+.....++|++||+||+|+.+ +.+...++..++..
T Consensus        56 t~G~~~~~~l~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~  134 (162)
T cd04138          56 TAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVSSRQGQDLAKS  134 (162)
T ss_pred             CCCCcchHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc-ceecHHHHHHHHHH
Confidence            8999883  88999999999999999999999999999999988775446899999999999975 55667778888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.++++||++|. |++++|++|++.+
T Consensus       135 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~  161 (162)
T cd04138         135 YGIPYIETSAKTRQ-GVEEAFYTLVREI  161 (162)
T ss_pred             hCCeEEEecCCCCC-CHHHHHHHHHHHh
Confidence            88999999999999 9999999998754

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.85  E-value=1e-20  Score=137.10  Aligned_cols=105  Identities=25%  Similarity=0.280  Sum_probs=94.7

Q ss_pred             CCCCCCc---cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|+++.   +...|++++|++|+|||++++++|+.+..|+.++.......++|+++|+||+|+...+.+..+++..++.
T Consensus        58 t~G~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~~~~~~~~~~  137 (170)
T cd04115          58 TAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFAD  137 (170)
T ss_pred             CCChHHHHHhhHHHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCCHHHHHHHHH
Confidence            7898863   6788999999999999999999999999999999876544679999999999998888888888999999


Q ss_pred             hcCCeEEEEcccC---CcccHHHHHHHHHHHH
Q psy2792          79 KYNCTFHEVSVAD---NSPAIYQAFDHLLTES  107 (173)
Q Consensus        79 ~~~~~~~e~Sak~---g~~~v~~lf~~l~~~i  107 (173)
                      ..++.|+++||++   +. +|+++|..++..+
T Consensus       138 ~~~~~~~e~Sa~~~~~~~-~i~~~f~~l~~~~  168 (170)
T cd04115         138 AHSMPLFETSAKDPSEND-HVEAIFMTLAHKL  168 (170)
T ss_pred             HcCCcEEEEeccCCcCCC-CHHHHHHHHHHHh
Confidence            8889999999999   88 9999999998765

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.85  E-value=1.7e-20  Score=135.04  Aligned_cols=106  Identities=37%  Similarity=0.591  Sum_probs=93.3

Q ss_pred             CCCCCC---ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTE---GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~---~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|+++   .....+++++|++|+|||+++++||+.+..|+..+..... ..++|+++||||+|+...+.++.+++..++
T Consensus        54 ~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~  133 (165)
T cd04146          54 TAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLA  133 (165)
T ss_pred             CCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccCHHHHHHHH
Confidence            789884   3677899999999999999999999999999988887642 357999999999999777788888888999


Q ss_pred             hhcCCeEEEEcccCC-cccHHHHHHHHHHHHh
Q psy2792          78 VKYNCTFHEVSVADN-SPAIYQAFDHLLTESR  108 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g-~~~v~~lf~~l~~~i~  108 (173)
                      ...++.|+++||++| . ||+++|+.|++.+.
T Consensus       134 ~~~~~~~~e~Sa~~~~~-~v~~~f~~l~~~~~  164 (165)
T cd04146         134 SELGCLFFEVSAAEDYD-GVHSVFHELCREVR  164 (165)
T ss_pred             HHcCCEEEEeCCCCCch-hHHHHHHHHHHHHh
Confidence            988999999999999 6 89999999998764

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd04148 RGK RGK subfamily

Probab=99.85  E-value=1.3e-20  Score=142.50  Aligned_cols=107  Identities=27%  Similarity=0.419  Sum_probs=95.3

Q ss_pred             CCCCCCccHhhhcc-cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792           2 TIGLTEGTLTAMIC-WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY   80 (173)
Q Consensus         2 TaG~e~~~~~~y~~-~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~   80 (173)
                      |+|++..+...++. ++|++|+|||++++.||+.+..|+..+.......++|+|+|+||+|+...+.++.+++..++...
T Consensus        57 t~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~a~~~  136 (221)
T cd04148          57 HWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVF  136 (221)
T ss_pred             CCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceecHHHHHHHHHHc
Confidence            78888556677788 99999999999999999999999999887653467999999999999877888888888888888


Q ss_pred             CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          81 NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        81 ~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++.|+++||+++. ||+++|++|+..+..
T Consensus       137 ~~~~~e~SA~~~~-gv~~l~~~l~~~~~~  164 (221)
T cd04148         137 DCKFIETSAGLQH-NVDELLEGIVRQIRL  164 (221)
T ss_pred             CCeEEEecCCCCC-CHHHHHHHHHHHHHh
Confidence            8999999999999 999999999998875

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.85  E-value=3.9e-20  Score=141.94  Aligned_cols=106  Identities=25%  Similarity=0.319  Sum_probs=91.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh--------CCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR--------AVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~--------~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |+|++++  ++..|+.++|++|+|||+++++||+.+..|+.++.+..        ...++|+||||||+|+...+++..+
T Consensus        55 t~G~~~~~~~~~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~  134 (247)
T cd04143          55 TSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRD  134 (247)
T ss_pred             CCCChhhhHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHH
Confidence            7898874  78889999999999999999999999999999987642        1257999999999999876778888


Q ss_pred             HHHHHhhh-cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          72 LGRSTAVK-YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        72 ~~~~~~~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ++..++.. .++.|+++||++|. ||+++|++|+..+.
T Consensus       135 ei~~~~~~~~~~~~~evSAktg~-gI~elf~~L~~~~~  171 (247)
T cd04143         135 EVEQLVGGDENCAYFEVSAKKNS-NLDEMFRALFSLAK  171 (247)
T ss_pred             HHHHHHHhcCCCEEEEEeCCCCC-CHHHHHHHHHHHhc
Confidence            88777653 46789999999999 99999999998664

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>KOG0393|consensus

Probab=99.84  E-value=9.5e-21  Score=138.73  Aligned_cols=108  Identities=21%  Similarity=0.312  Sum_probs=97.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |||||++  +++..|.++|+||+||++.+++||+++. .|+.++..++  +++|+||||+|.||.+.            .
T Consensus        60 TAGqedYDrlRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~c--p~vpiiLVGtk~DLr~d~~~~~~l~~~~~~  137 (198)
T KOG0393|consen   60 TAGQEDYDRLRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHC--PNVPIILVGTKADLRDDPSTLEKLQRQGLE  137 (198)
T ss_pred             cCCCcccccccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhC--CCCCEEEEeehHHhhhCHHHHHHHHhccCC
Confidence            9999995  8888999999999999999999999985 5999999998  89999999999999732            3


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      .|+.+++..++++.| ..|+||||++.. |+.++|+..+...+..+.
T Consensus       138 ~Vt~~~g~~lA~~iga~~y~EcSa~tq~-~v~~vF~~a~~~~l~~~~  183 (198)
T KOG0393|consen  138 PVTYEQGLELAKEIGAVKYLECSALTQK-GVKEVFDEAIRAALRPPQ  183 (198)
T ss_pred             cccHHHHHHHHHHhCcceeeeehhhhhC-CcHHHHHHHHHHHhcccc
Confidence            678899999999999 669999999999 999999999998887543

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.84  E-value=2.9e-20  Score=133.51  Aligned_cols=103  Identities=18%  Similarity=0.275  Sum_probs=91.7

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++.  .+...+++++|++|+|||++++++|+.+..|+..+....  .++|+++|+||+|+.+..++...++..++..
T Consensus        59 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  136 (164)
T cd04101          59 SAGQELYSDMVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS--KHMPGVLVGNKMDLADKAEVTDAQAQAFAQA  136 (164)
T ss_pred             CCCHHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccccccCCCHHHHHHHHHH
Confidence            788876  378899999999999999999999999999999988765  5799999999999987777777777778877


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.++++||+++. ||+++|+.|++.+
T Consensus       137 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~  163 (164)
T cd04101         137 NQLKFFKTSALRGV-GYEEPFESLARAF  163 (164)
T ss_pred             cCCeEEEEeCCCCC-ChHHHHHHHHHHh
Confidence            88899999999999 9999999998764

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd01864 Rab19 Rab19 subfamily

Probab=99.84  E-value=2.8e-20  Score=133.94  Aligned_cols=103  Identities=26%  Similarity=0.312  Sum_probs=91.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..+++++|++++|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..+++.
T Consensus        59 ~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~  137 (165)
T cd01864          59 TAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYG-ASNVVLLLIGNKCDLEEQREVLFEEACTLAEK  137 (165)
T ss_pred             CCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            7898774  78899999999999999999999999999999998754 36799999999999987777888888888888


Q ss_pred             cCC-eEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNC-TFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~-~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .+. .++++||++|. |++++|+++++.
T Consensus       138 ~~~~~~~e~Sa~~~~-~v~~~~~~l~~~  164 (165)
T cd01864         138 NGMLAVLETSAKESQ-NVEEAFLLMATE  164 (165)
T ss_pred             cCCcEEEEEECCCCC-CHHHHHHHHHHh
Confidence            875 68999999999 999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04113 Rab4 Rab4 subfamily

Probab=99.84  E-value=3.8e-20  Score=132.57  Aligned_cols=103  Identities=23%  Similarity=0.250  Sum_probs=93.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..+++++|++|+|||++++++|+.+..|+..+.... .+++|++||+||+|+...+.+..+++..++..
T Consensus        56 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~  134 (161)
T cd04113          56 TAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALA-SPNIVVILVGNKSDLADQREVTFLEASRFAQE  134 (161)
T ss_pred             CcchHHHHHhHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcchhccCCHHHHHHHHHH
Confidence            7888773  78899999999999999999999999999999887665 46899999999999987777888889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .++.++++||+++. |++++|+++++.
T Consensus       135 ~~~~~~~~Sa~~~~-~i~~~~~~~~~~  160 (161)
T cd04113         135 NGLLFLETSALTGE-NVEEAFLKCARS  160 (161)
T ss_pred             cCCEEEEEECCCCC-CHHHHHHHHHHh
Confidence            99999999999999 999999999875

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>PLN03118 Rab family protein; Provisional

Probab=99.84  E-value=1.4e-19  Score=135.76  Aligned_cols=110  Identities=25%  Similarity=0.300  Sum_probs=95.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+.. |...+.......++|++|||||+|+...+.+..+++..++.
T Consensus        69 t~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~  148 (211)
T PLN03118         69 TAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAK  148 (211)
T ss_pred             CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHH
Confidence            8999884  88999999999999999999999999975 77666654433568999999999998777788888888888


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      ..++.|+++||+++. ||+++|.+|+..+.+.+.
T Consensus       149 ~~~~~~~e~SAk~~~-~v~~l~~~l~~~~~~~~~  181 (211)
T PLN03118        149 EHGCLFLECSAKTRE-NVEQCFEELALKIMEVPS  181 (211)
T ss_pred             HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHhhhh
Confidence            889999999999999 999999999999987543

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.84  E-value=4.5e-20  Score=134.06  Aligned_cols=101  Identities=20%  Similarity=0.316  Sum_probs=88.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |+|+++.  ++..|++++|++|+|||+++++||+.+. .|+..+....  +++|+++||||+|+..            .+
T Consensus        55 t~G~~~~~~~~~~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  132 (173)
T cd04130          55 TAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN--PKAPIILVGTQADLRTDVNVLIQLARYGEK  132 (173)
T ss_pred             CCCChhhccccccccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhhccChhHHHHHhhcCCC
Confidence            7899874  7888999999999999999999999985 6998887643  5799999999999863            45


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHH
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      .+..+++..++...+. .|++|||++|. ||+++|+.++-
T Consensus       133 ~v~~~~~~~~a~~~~~~~~~e~Sa~~~~-~v~~lf~~~~~  171 (173)
T cd04130         133 PVSQSRAKALAEKIGACEYIECSALTQK-NLKEVFDTAIL  171 (173)
T ss_pred             CcCHHHHHHHHHHhCCCeEEEEeCCCCC-CHHHHHHHHHh
Confidence            7788889999998887 89999999999 99999998763

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd04116 Rab9 Rab9 subfamily

Probab=99.84  E-value=5.1e-20  Score=133.11  Aligned_cols=103  Identities=20%  Similarity=0.284  Sum_probs=90.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |+|+++.  ++..|++++|++|+|||+++++||+.+..|+.++.....   ..++|++|||||+|+. .+.+..+++..+
T Consensus        61 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~  139 (170)
T cd04116          61 TAGQERFRSLRTPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAW  139 (170)
T ss_pred             CCChHHHHHhHHHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHH
Confidence            7898873  888999999999999999999999999999998876542   2568999999999986 467778889999


Q ss_pred             hhhcC-CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          77 AVKYN-CTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        77 ~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      +..++ +.++++||++|. ||.++|.++++.
T Consensus       140 ~~~~~~~~~~e~Sa~~~~-~v~~~~~~~~~~  169 (170)
T cd04116         140 CRENGDYPYFETSAKDAT-NVAAAFEEAVRR  169 (170)
T ss_pred             HHHCCCCeEEEEECCCCC-CHHHHHHHHHhh
Confidence            98887 479999999999 999999999864

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04177 RSR1 RSR1 subgroup

Probab=99.83  E-value=1.2e-19  Score=131.21  Aligned_cols=106  Identities=26%  Similarity=0.346  Sum_probs=94.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  +++.|++++|++|+|||++++++|+.+..|...+.+.....++|+++|+||+|+...+.+..+++..+++.
T Consensus        56 t~G~~~~~~~~~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~  135 (168)
T cd04177          56 TAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQ  135 (168)
T ss_pred             CCCcccchhhhHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccCHHHHHHHHHH
Confidence            8999884  89999999999999999999999999999999988755446899999999999987777777888888888


Q ss_pred             cC-CeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YN-CTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ++ +.++++||++|. ||+++|.+++..++
T Consensus       136 ~~~~~~~~~SA~~~~-~i~~~f~~i~~~~~  164 (168)
T cd04177         136 WGNVPFYETSARKRT-NVDEVFIDLVRQII  164 (168)
T ss_pred             cCCceEEEeeCCCCC-CHHHHHHHHHHHHh
Confidence            87 789999999999 99999999998664

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04124 RabL2 RabL2 subfamily

Probab=99.83  E-value=9.6e-20  Score=130.95  Aligned_cols=102  Identities=24%  Similarity=0.315  Sum_probs=88.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+++..|+..+.+..  +++|+++|+||+|+...  + .++...++..
T Consensus        56 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~p~ivv~nK~Dl~~~--~-~~~~~~~~~~  130 (161)
T cd04124          56 TAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR--PEIPCIVVANKIDLDPS--V-TQKKFNFAEK  130 (161)
T ss_pred             CCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCcEEEEEECccCchh--H-HHHHHHHHHH
Confidence            7899883  88999999999999999999999999999999998764  57999999999998532  1 3445566777


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++++++||++|. |++++|+.+++.+.+
T Consensus       131 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~  159 (161)
T cd04124         131 HNLPLYYVSAADGT-NVVKLFQDAIKLAVS  159 (161)
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHh
Confidence            78899999999999 999999999988876

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd04142 RRP22 RRP22 subfamily

Probab=99.83  E-value=9.9e-20  Score=135.44  Aligned_cols=99  Identities=21%  Similarity=0.292  Sum_probs=85.3

Q ss_pred             HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-hcCCeEEE
Q psy2792          10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTAV-KYNCTFHE   86 (173)
Q Consensus        10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e   86 (173)
                      ...+++++|++|+|||+++++||+.+..|+..+.+...  ..++|++|||||+|+...+.+..+++..++. .+++.|++
T Consensus        74 ~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e  153 (198)
T cd04142          74 RFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLE  153 (198)
T ss_pred             HHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECccccccccccHHHHHHHHHHhcCCcEEE
Confidence            34568999999999999999999999999998887641  3679999999999997767777777777654 56789999


Q ss_pred             EcccCCcccHHHHHHHHHHHHhc
Q psy2792          87 VSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      |||++|. ||+++|+.++..+..
T Consensus       154 ~Sak~g~-~v~~lf~~i~~~~~~  175 (198)
T cd04142         154 CSAKYNW-HILLLFKELLISATT  175 (198)
T ss_pred             ecCCCCC-CHHHHHHHHHHHhhc
Confidence            9999999 999999999988876

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>cd04118 Rab24 Rab24 subfamily

Probab=99.83  E-value=1.5e-19  Score=133.39  Aligned_cols=106  Identities=23%  Similarity=0.204  Sum_probs=92.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC----ccCCHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL----RQVDESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~----~~v~~~~~~~   75 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+....  .++|+++|+||+|+...    +.+..+++..
T Consensus        57 ~~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~  134 (193)
T cd04118          57 TAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE--EHCKIYLCGTKSDLIEQDRSLRQVDFHDVQD  134 (193)
T ss_pred             CCCchhhhhhhHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC--CCCCEEEEEEcccccccccccCccCHHHHHH
Confidence            7999873  78889999999999999999999999999999988754  57999999999998532    4556677788


Q ss_pred             HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        76 ~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      ++...++.++++||++|. ||+++|++|++.+.+.
T Consensus       135 ~~~~~~~~~~~~Sa~~~~-gv~~l~~~i~~~~~~~  168 (193)
T cd04118         135 FADEIKAQHFETSSKTGQ-NVDELFQKVAEDFVSR  168 (193)
T ss_pred             HHHHcCCeEEEEeCCCCC-CHHHHHHHHHHHHHHh
Confidence            888888999999999999 9999999999988763

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04158 ARD1 ARD1 subfamily

Probab=99.82  E-value=1.4e-19  Score=131.07  Aligned_cols=108  Identities=12%  Similarity=0.108  Sum_probs=88.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+++..|+..+.......++|++||+||+|+..  .++.+++..++..
T Consensus        50 t~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~  127 (169)
T cd04158          50 VGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSVEEMTELLSL  127 (169)
T ss_pred             CCCChhcchHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc--CCCHHHHHHHhCC
Confidence            7898874  78899999999999999999999999999998887654335689999999999963  3566767666543


Q ss_pred             cC------CeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YN------CTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~------~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      .+      +.+++|||++|. ||+++|++|++.+.+..+
T Consensus       128 ~~~~~~~~~~~~~~Sa~~g~-gv~~~f~~l~~~~~~~~~  165 (169)
T cd04158         128 HKLCCGRSWYIQGCDARSGM-GLYEGLDWLSRQLVAAGV  165 (169)
T ss_pred             ccccCCCcEEEEeCcCCCCC-CHHHHHHHHHHHHhhccc
Confidence            22      368899999999 999999999998887554

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04129 Rho2 Rho2 subfamily

Probab=99.82  E-value=2e-19  Score=132.45  Aligned_cols=108  Identities=20%  Similarity=0.203  Sum_probs=91.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCC----------CccC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEH----------LRQV   68 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~----------~~~v   68 (173)
                      |+|+++.  +.+.++.++|++|+|||+++.++|+.+. .|+..+....  +++|++|||||+|+.+          .+.+
T Consensus        56 t~g~~~~~~~~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  133 (187)
T cd04129          56 TAGQEEYERLRPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYC--PNVPVILVGLKKDLRQDAVAKEEYRTQRFV  133 (187)
T ss_pred             CCCChhccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEeeChhhhhCcccccccccCCcC
Confidence            7888774  5667889999999999999999999996 5999998765  5799999999999853          3456


Q ss_pred             CHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          69 DESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        69 ~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      ..+++..+++..+. .||+|||++|. ||+++|+++++.+....+
T Consensus       134 ~~~~~~~~~~~~~~~~~~e~Sa~~~~-~v~~~f~~l~~~~~~~~~  177 (187)
T cd04129         134 PIQQGKRVAKEIGAKKYMECSALTGE-GVDDVFEAATRAALLVRK  177 (187)
T ss_pred             CHHHHHHHHHHhCCcEEEEccCCCCC-CHHHHHHHHHHHHhcccC
Confidence            66788888988884 79999999999 999999999988876433

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.82  E-value=1.9e-19  Score=128.87  Aligned_cols=106  Identities=30%  Similarity=0.367  Sum_probs=94.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...+++++|++|+|||++++.+|+.+..|+..+..+. .+++|+++|+||+|+...+++..+.+..++..
T Consensus        56 ~~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~-~~~~pivvv~nK~D~~~~~~~~~~~~~~~~~~  134 (164)
T smart00175       56 TAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYA-DPNVVIMLVGNKSDLEDQRQVSREEAEAFAEE  134 (164)
T ss_pred             CCChHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEEchhcccccCCCHHHHHHHHHH
Confidence            6787763  78889999999999999999999999999999988775 36899999999999987677788888889988


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. |++++|++|++.+.+
T Consensus       135 ~~~~~~e~Sa~~~~-~i~~l~~~i~~~~~~  163 (164)
T smart00175      135 HGLPFFETSAKTNT-NVEEAFEELAREILK  163 (164)
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHhh
Confidence            89999999999999 999999999998765

Rab GTPases are implicated in vesicle trafficking.

>cd04135 Tc10 TC10 subfamily

Probab=99.81  E-value=3e-19  Score=129.43  Aligned_cols=103  Identities=20%  Similarity=0.291  Sum_probs=89.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|++++  ++..++.++|++|+|||++++++|+.+. .|+..+....  +++|+++||||+|+.+.            +
T Consensus        55 t~G~~~~~~~~~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~--~~~piivv~nK~Dl~~~~~~~~~~~~~~~~  132 (174)
T cd04135          55 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPYLLVGTQIDLRDDPKTLARLNDMKEK  132 (174)
T ss_pred             CCCcccccccccccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeEchhhhcChhhHHHHhhccCC
Confidence            7899873  8888999999999999999999999995 6888887653  78999999999998543            3


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.+++..+++..++ .|++|||++|. ||+++|+.++..+
T Consensus       133 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~-gi~~~f~~~~~~~  173 (174)
T cd04135         133 PVTVEQGQKLAKEIGAHCYVECSALTQK-GLKTVFDEAILAI  173 (174)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEecCCcCC-CHHHHHHHHHHHh
Confidence            6778888999988885 69999999999 9999999998765

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04149 Arf6 Arf6 subfamily

Probab=99.81  E-value=1.8e-19  Score=130.62  Aligned_cols=101  Identities=17%  Similarity=0.201  Sum_probs=81.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +++.||++||++|+|||++++.+|+++..|+.++.......++|++||+||+|+.+  .+..+++..++..
T Consensus        60 t~G~~~~~~~~~~~~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~  137 (168)
T cd04149          60 VGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPHEIQEKLGL  137 (168)
T ss_pred             CCCCHHHHHHHHHHhccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc--CCCHHHHHHHcCC
Confidence            7999874  78899999999999999999999999988887776543235789999999999864  3456666665421


Q ss_pred             -----cCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          80 -----YNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        80 -----~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                           ..+.++++||++|. ||+++|++|++
T Consensus       138 ~~~~~~~~~~~~~SAk~g~-gv~~~~~~l~~  167 (168)
T cd04149         138 TRIRDRNWYVQPSCATSGD-GLYEGLTWLSS  167 (168)
T ss_pred             CccCCCcEEEEEeeCCCCC-ChHHHHHHHhc
Confidence                 23568999999999 99999999974

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04123 Rab21 Rab21 subfamily

Probab=99.81  E-value=5.4e-19  Score=126.08  Aligned_cols=104  Identities=28%  Similarity=0.370  Sum_probs=92.5

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .+++.++.++|++++|||+++.++|+.+..|+.++..... .++|+++|+||+|+...+.+..++...++..
T Consensus        56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~piiiv~nK~D~~~~~~~~~~~~~~~~~~  134 (162)
T cd04123          56 TAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRG-NNISLVIVGNKIDLERQRVVSKSEAEEYAKS  134 (162)
T ss_pred             CCchHHHHHhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECcccccccCCCHHHHHHHHHH
Confidence            678776  3788899999999999999999999999999999987762 4799999999999987777778888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.++++||+++. |++++|+++++.+
T Consensus       135 ~~~~~~~~s~~~~~-gi~~~~~~l~~~~  161 (162)
T cd04123         135 VGAKHFETSAKTGK-GIEELFLSLAKRM  161 (162)
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHh
Confidence            89999999999999 9999999998765

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.81  E-value=6.5e-19  Score=126.22  Aligned_cols=104  Identities=28%  Similarity=0.333  Sum_probs=93.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+....|+..+.... ...+|+++|+||+|+...+.+..++...++..
T Consensus        57 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~~~~~~~~~~~~~  135 (163)
T cd01860          57 TAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNA-SPNIIIALVGNKADLESKRQVSTEEAQEYADE  135 (163)
T ss_pred             CCchHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECccccccCcCCHHHHHHHHHH
Confidence            7888763  77889999999999999999999999999999988765 36799999999999986677778888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.++++||++|. |++++|++|++.+
T Consensus       136 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~l  162 (163)
T cd01860         136 NGLLFFETSAKTGE-NVNELFTEIAKKL  162 (163)
T ss_pred             cCCEEEEEECCCCC-CHHHHHHHHHHHh
Confidence            88999999999999 9999999999875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.81  E-value=1.2e-19  Score=132.39  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=80.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA--   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~--   77 (173)
                      |+|+++.  ++..||++||++|+|||++++++|+.+..|+..+.......++|++|||||+|+.+..  ..++.....  
T Consensus        64 ~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~  141 (175)
T smart00177       64 VGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM--KAAEITEKLGL  141 (175)
T ss_pred             CCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC--CHHHHHHHhCc
Confidence            7899874  8899999999999999999999999999888887654323579999999999996432  233332221  


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                         ....+.++++||++|. ||+++|++|.+.+
T Consensus       142 ~~~~~~~~~~~~~Sa~~g~-gv~e~~~~l~~~~  173 (175)
T smart00177      142 HSIRDRNWYIQPTCATSGD-GLYEGLTWLSNNL  173 (175)
T ss_pred             cccCCCcEEEEEeeCCCCC-CHHHHHHHHHHHh
Confidence               1223457799999999 9999999998764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd01861 Rab6 Rab6 subfamily

Probab=99.81  E-value=5.5e-19  Score=126.34  Aligned_cols=103  Identities=25%  Similarity=0.383  Sum_probs=91.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...+++++|++|+|||++++++|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..++...++..
T Consensus        56 ~~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~  134 (161)
T cd01861          56 TAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDER-GNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKE  134 (161)
T ss_pred             CCCcHHHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCEEEEEEEChhccccCccCHHHHHHHHHH
Confidence            7888774  78889999999999999999999999999999987654 24799999999999976677778888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .++.++++||+++. |++++|.+|++.
T Consensus       135 ~~~~~~~~Sa~~~~-~v~~l~~~i~~~  160 (161)
T cd01861         135 LNAMFIETSAKAGH-NVKELFRKIASA  160 (161)
T ss_pred             hCCEEEEEeCCCCC-CHHHHHHHHHHh
Confidence            88999999999999 999999999874

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.81  E-value=1.4e-19  Score=130.59  Aligned_cols=101  Identities=25%  Similarity=0.282  Sum_probs=84.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH----HHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE----SLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~----~~~~~   75 (173)
                      |+|+++.  ++..||++||++|+|||.+++.+|..+..|+.++....  +++|+++|+||+|+...+.+..    ..+..
T Consensus        51 t~G~~~~~~~~~~~~~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~--~~~piilv~NK~Dl~~~~~~~~i~~~~~~~~  128 (164)
T cd04162          51 IGGSQNLRKYWKRYLSGSQGLIFVVDSADSERLPLARQELHQLLQHP--PDLPLVVLANKQDLPAARSVQEIHKELELEP  128 (164)
T ss_pred             CCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHhCC--CCCcEEEEEeCcCCcCCCCHHHHHHHhCChh
Confidence            7899874  88999999999999999999999999999998887544  6799999999999976554432    22455


Q ss_pred             HhhhcCCeEEEEcccC------CcccHHHHHHHHHH
Q psy2792          76 TAVKYNCTFHEVSVAD------NSPAIYQAFDHLLT  105 (173)
Q Consensus        76 ~~~~~~~~~~e~Sak~------g~~~v~~lf~~l~~  105 (173)
                      ++.+.++.++++||++      ++ ||+++|+.++.
T Consensus       129 ~~~~~~~~~~~~Sa~~~~s~~~~~-~v~~~~~~~~~  163 (164)
T cd04162         129 IARGRRWILQGTSLDDDGSPSRME-AVKDLLSQLIN  163 (164)
T ss_pred             hcCCCceEEEEeeecCCCChhHHH-HHHHHHHHHhc
Confidence            6677788899999998      99 99999998864

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.80  E-value=1.1e-19  Score=130.61  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=78.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH-HHHHh-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL-GRSTA-   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~-~~~~~-   77 (173)
                      |+|+++.  ++..||++||++|||||++++.+|+.+..|+..+.......++|++||+||+|+.+.  +..++ ...+. 
T Consensus        51 ~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~  128 (159)
T cd04150          51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAAEVTDKLGL  128 (159)
T ss_pred             CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence            7899874  789999999999999999999999999888877764332356899999999999642  22323 22222 


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                         ...++.++++||++|. ||+++|++|++
T Consensus       129 ~~~~~~~~~~~~~Sak~g~-gv~~~~~~l~~  158 (159)
T cd04150         129 HSLRNRNWYIQATCATSGD-GLYEGLDWLSN  158 (159)
T ss_pred             cccCCCCEEEEEeeCCCCC-CHHHHHHHHhc
Confidence               1223457899999999 99999999874

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd01863 Rab18 Rab18 subfamily

Probab=99.80  E-value=9.5e-19  Score=125.20  Aligned_cols=103  Identities=29%  Similarity=0.389  Sum_probs=91.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...+++++|++|+|||++++.+|+.+..|+..+..+....++|+++||||+|+.. ..+..++...++..
T Consensus        56 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~-~~~~~~~~~~~~~~  134 (161)
T cd01863          56 TAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN-REVTREEGLKFARK  134 (161)
T ss_pred             CCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc-cccCHHHHHHHHHH
Confidence            7888774  77889999999999999999999999999999998876557899999999999973 45667788888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .++.++++||++|. |++++|+.+.+.
T Consensus       135 ~~~~~~~~Sa~~~~-gi~~~~~~~~~~  160 (161)
T cd01863         135 HNMLFIETSAKTRD-GVQQAFEELVEK  160 (161)
T ss_pred             cCCEEEEEecCCCC-CHHHHHHHHHHh
Confidence            89999999999999 999999998864

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd01892 Miro2 Miro2 subfamily

Probab=99.80  E-value=4e-19  Score=128.88  Aligned_cols=104  Identities=19%  Similarity=0.171  Sum_probs=86.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..||+++|++|+|||++++++|+.+..|+..+..   ..++|+++|+||+|+.+.+.+...+...+++.
T Consensus        61 ~~g~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~---~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~  137 (169)
T cd01892          61 VGEDEVAILLNDAELAACDVACLVYDSSDPKSFSYCAEVYKKYFM---LGEIPCLFVAAKADLDEQQQRYEVQPDEFCRK  137 (169)
T ss_pred             cCCcccccccchhhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhcc---CCCCeEEEEEEcccccccccccccCHHHHHHH
Confidence            6788774  788899999999999999999999999999887643   24699999999999976555544556677777


Q ss_pred             cCCe-EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCT-FHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++. ++++||++|. |++++|..|++.+..
T Consensus       138 ~~~~~~~~~Sa~~~~-~v~~lf~~l~~~~~~  167 (169)
T cd01892         138 LGLPPPLHFSSKLGD-SSNELFTKLATAAQY  167 (169)
T ss_pred             cCCCCCEEEEeccCc-cHHHHHHHHHHHhhC
Confidence            7764 7999999999 999999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.80  E-value=5.9e-19  Score=129.47  Aligned_cols=105  Identities=14%  Similarity=0.161  Sum_probs=81.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..||+++|++|+|||++++++|+.+..|+..+.......++|++|||||+|+.+.  +..++......-
T Consensus        68 ~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~l~l  145 (181)
T PLN00223         68 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA--MNAAEITDKLGL  145 (181)
T ss_pred             CCCCHHHHHHHHHHhccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence            7899873  889999999999999999999999998888877754322357999999999999753  333333332221


Q ss_pred             c-----CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 Y-----NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~-----~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .     .+.+++|||++|+ ||+++|++|++.+..
T Consensus       146 ~~~~~~~~~~~~~Sa~~g~-gv~e~~~~l~~~~~~  179 (181)
T PLN00223        146 HSLRQRHWYIQSTCATSGE-GLYEGLDWLSNNIAN  179 (181)
T ss_pred             cccCCCceEEEeccCCCCC-CHHHHHHHHHHHHhh
Confidence            1     1246689999999 999999999988754

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.80  E-value=1.6e-18  Score=128.71  Aligned_cols=113  Identities=27%  Similarity=0.289  Sum_probs=92.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-CccCCHHHHHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-LRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-~~~v~~~~~~~~~~   78 (173)
                      |+|+++.  ++..|+.++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.. .+.+..++......
T Consensus        54 ~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~~~~~~~~  133 (198)
T cd04147          54 TSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVE  133 (198)
T ss_pred             CCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHHHHHHHHH
Confidence            7888773  77889999999999999999999999999999988876446799999999999965 35555555544443


Q ss_pred             -hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCc
Q psy2792          79 -KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGI  115 (173)
Q Consensus        79 -~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~  115 (173)
                       ..+..|+++||++|. ||+++|++|++.+.......+
T Consensus       134 ~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~~~~~~~  170 (198)
T cd04147         134 LDWNCGFVETSAKDNE-NVLEVFKELLRQANLPYNLSP  170 (198)
T ss_pred             hhcCCcEEEecCCCCC-CHHHHHHHHHHHhhcccccch
Confidence             445789999999999 999999999998876555443

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.80  E-value=1.9e-18  Score=123.61  Aligned_cols=107  Identities=28%  Similarity=0.393  Sum_probs=93.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..+++++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.....+...+...++..
T Consensus        55 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~~~~~~~~~~~  134 (164)
T cd04139          55 TAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQ  134 (164)
T ss_pred             CCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccCHHHHHHHHHH
Confidence            7888773  88899999999999999999999999999999888865446799999999999976555667777788888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++++++++||++|. |++++|+++++.+.+
T Consensus       135 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  163 (164)
T cd04139         135 WGVPYVETSAKTRQ-NVEKAFYDLVREIRQ  163 (164)
T ss_pred             hCCeEEEeeCCCCC-CHHHHHHHHHHHHHh
Confidence            88999999999999 999999999987753

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>cd01862 Rab7 Rab7 subfamily

Probab=99.79  E-value=2.4e-18  Score=124.15  Aligned_cols=108  Identities=25%  Similarity=0.325  Sum_probs=92.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |+|++..  ++..|++++|++|+|||++++++|+.+..|...+.....   ..++|+++|+||+|+.....+..++...+
T Consensus        56 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~  135 (172)
T cd01862          56 TAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQW  135 (172)
T ss_pred             CCChHHHHhHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHH
Confidence            6788763  788999999999999999999999999999988766542   23799999999999976566677778888


Q ss_pred             hhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          77 AVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        77 ~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      ++..+ ..++++||++|. |++++|+++++.+.+.
T Consensus       136 ~~~~~~~~~~~~Sa~~~~-gv~~l~~~i~~~~~~~  169 (172)
T cd01862         136 CQSNGNIPYFETSAKEAI-NVEQAFETIARKALEQ  169 (172)
T ss_pred             HHHcCCceEEEEECCCCC-CHHHHHHHHHHHHHhc
Confidence            88877 789999999999 9999999999988774

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.79  E-value=2.2e-18  Score=125.01  Aligned_cols=103  Identities=20%  Similarity=0.251  Sum_probs=86.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..++.++|++++|||++++++|+.+. .|+..+....  .++|+++|+||+|+...            .
T Consensus        56 t~G~~~~~~~~~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~i~~~~~~  133 (175)
T cd01870          56 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQE  133 (175)
T ss_pred             CCCchhhhhccccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEeeChhcccChhhhhhhhhccCC
Confidence            7899873  6678899999999999999999999985 5988887754  57999999999998532            3


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .+...++..++...+ ..+++|||++|. ||+++|.+|++.+
T Consensus       134 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-~v~~lf~~l~~~~  174 (175)
T cd01870         134 PVKPEEGRDMANKIGAFGYMECSAKTKE-GVREVFEMATRAA  174 (175)
T ss_pred             CccHHHHHHHHHHcCCcEEEEeccccCc-CHHHHHHHHHHHh
Confidence            355677788888777 479999999999 9999999998654

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04114 Rab30 Rab30 subfamily

Probab=99.79  E-value=2.8e-18  Score=123.66  Aligned_cols=104  Identities=21%  Similarity=0.255  Sum_probs=90.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  .+..|+..+|++|+|||+++..+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+....+...
T Consensus        63 ~~g~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~~i~v~NK~D~~~~~~i~~~~~~~~~~~  141 (169)
T cd04114          63 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-NNKVITILVGNKIDLAERREVSQQRAEEFSDA  141 (169)
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence            6787663  66889999999999999999999999999999887765 35799999999999987777777777777777


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ....++++||++|. |++++|++|++.+
T Consensus       142 ~~~~~~~~Sa~~~~-gv~~l~~~i~~~~  168 (169)
T cd04114         142 QDMYYLETSAKESD-NVEKLFLDLACRL  168 (169)
T ss_pred             cCCeEEEeeCCCCC-CHHHHHHHHHHHh
Confidence            77889999999999 9999999999765

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.78  E-value=5.6e-19  Score=129.67  Aligned_cols=105  Identities=16%  Similarity=0.197  Sum_probs=80.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA--   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~--   77 (173)
                      |+|+++.  ++..||+++|++|+|||++++++|+++..|+..+.......++|++||+||+|+.+.  +..++.....  
T Consensus        68 ~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~l~~  145 (182)
T PTZ00133         68 VGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNA--MSTTEVTEKLGL  145 (182)
T ss_pred             CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC--CCHHHHHHHhCC
Confidence            7899874  889999999999999999999999999888777654322356899999999998642  2333322211  


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                         ....+.++++||++|. ||+++|++|++.+.+
T Consensus       146 ~~~~~~~~~~~~~Sa~tg~-gv~e~~~~l~~~i~~  179 (182)
T PTZ00133        146 HSVRQRNWYIQGCCATTAQ-GLYEGLDWLSANIKK  179 (182)
T ss_pred             CcccCCcEEEEeeeCCCCC-CHHHHHHHHHHHHHH
Confidence               1122356799999999 999999999987765

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.77  E-value=7.1e-18  Score=123.02  Aligned_cols=108  Identities=28%  Similarity=0.383  Sum_probs=94.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..++.++|++|+|||+++..+|+.+..|+..+.+.....+.|+|+|+||+|+...+.+..++...++..
T Consensus        56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~  135 (180)
T cd04137          56 TAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAES  135 (180)
T ss_pred             CCChHhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccCHHHHHHHHHH
Confidence            7888774  77889999999999999999999999999988887765346789999999999977677777777788888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +++.++++||+++. |+.++|.++++.+...
T Consensus       136 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~~  165 (180)
T cd04137         136 WGAAFLESSARENE-NVEEAFELLIEEIEKV  165 (180)
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHHh
Confidence            88899999999999 9999999999988753

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>cd04154 Arl2 Arl2 subfamily

Probab=99.77  E-value=3e-18  Score=124.43  Aligned_cols=101  Identities=20%  Similarity=0.190  Sum_probs=81.9

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV-   78 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-   78 (173)
                      |||++.  .++..|++++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+..  ..++...+.. 
T Consensus        65 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~~~~~~~~~~~  142 (173)
T cd04154          65 VGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL--SEEEIREALEL  142 (173)
T ss_pred             CCCCHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC--CHHHHHHHhCc
Confidence            789986  37889999999999999999999999998898887654323679999999999996532  3445554442 


Q ss_pred             ----hcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          79 ----KYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        79 ----~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                          ..++.++++||++|. |++++|++++.
T Consensus       143 ~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~  172 (173)
T cd04154         143 DKISSHHWRIQPCSAVTGE-GLLQGIDWLVD  172 (173)
T ss_pred             cccCCCceEEEeccCCCCc-CHHHHHHHHhc
Confidence                345789999999999 99999999864

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>KOG3883|consensus

Probab=99.77  E-value=8.5e-18  Score=117.21  Aligned_cols=107  Identities=29%  Similarity=0.454  Sum_probs=98.4

Q ss_pred             CCCCCCc---cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |||...+   +.++|+.-+|++++|||..|++||+.++....+|....+...+||+++|||+|+.+.+++..+.+..||+
T Consensus        67 TaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~  146 (198)
T KOG3883|consen   67 TAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAK  146 (198)
T ss_pred             cccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccchhcCHHHHHHHHh
Confidence            8898875   9999999999999999999999999887777777777767889999999999999889999999999999


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...+..++++|++.. .+-+.|..++..+..
T Consensus       147 rEkvkl~eVta~dR~-sL~epf~~l~~rl~~  176 (198)
T KOG3883|consen  147 REKVKLWEVTAMDRP-SLYEPFTYLASRLHQ  176 (198)
T ss_pred             hhheeEEEEEeccch-hhhhHHHHHHHhccC
Confidence            999999999999999 999999999988765

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.77  E-value=5.1e-18  Score=124.59  Aligned_cols=105  Identities=19%  Similarity=0.207  Sum_probs=85.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+++.+..|+.++.......++|++||+||+|+..  .+..++...+...
T Consensus        59 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~--~~~~~~~~~~~~~  136 (183)
T cd04152          59 VGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVSEVEKLLAL  136 (183)
T ss_pred             CCCcHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc--cCCHHHHHHHhCc
Confidence            7899873  88999999999999999999999999999998887755345799999999999863  2334444443321


Q ss_pred             ------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 ------YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                            .++.++++||++|. ||+++|++|++.+.+
T Consensus       137 ~~~~~~~~~~~~~~SA~~~~-gi~~l~~~l~~~l~~  171 (183)
T cd04152         137 HELSASTPWHVQPACAIIGE-GLQEGLEKLYEMILK  171 (183)
T ss_pred             cccCCCCceEEEEeecccCC-CHHHHHHHHHHHHHH
Confidence                  12468899999999 999999999998875

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd01893 Miro1 Miro1 subfamily

Probab=99.76  E-value=1.3e-17  Score=120.26  Aligned_cols=105  Identities=21%  Similarity=0.147  Sum_probs=82.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~   76 (173)
                      |+|+++.  .+..++.++|++++|||++++++|+.+. .|+..+....  .++|+++|+||+|+.+.....  .++...+
T Consensus        54 t~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~--~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~  131 (166)
T cd01893          54 TSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG--VKVPIILVGNKSDLRDGSSQAGLEEEMLPI  131 (166)
T ss_pred             CCCchhhhHHHhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhcccccchhHHHHHHHHH
Confidence            7888763  5677789999999999999999999985 6888887765  579999999999997654421  2333334


Q ss_pred             hhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 AVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 ~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +..+.  ..+++|||++|. |++++|+.+...+..
T Consensus       132 ~~~~~~~~~~~e~Sa~~~~-~v~~lf~~~~~~~~~  165 (166)
T cd01893         132 MNEFREIETCVECSAKTLI-NVSEVFYYAQKAVLH  165 (166)
T ss_pred             HHHHhcccEEEEecccccc-CHHHHHHHHHHHhcC
Confidence            44332  379999999999 999999999987754

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd00876 Ras Ras family

Probab=99.75  E-value=1.8e-17  Score=117.89  Aligned_cols=104  Identities=36%  Similarity=0.550  Sum_probs=91.7

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .+...++.++|++++|||++++++++++..|...+........+|+++|+||+|+...+.+..+++..++..
T Consensus        54 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  133 (160)
T cd00876          54 TAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKE  133 (160)
T ss_pred             CCChHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccccceecHHHHHHHHHH
Confidence            678776  377889999999999999999999999999998888765335799999999999987677788888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      +++.++++||+++. |++++|++|+..
T Consensus       134 ~~~~~~~~S~~~~~-~i~~l~~~l~~~  159 (160)
T cd00876         134 WGCPFIETSAKDNI-NIDEVFKLLVRE  159 (160)
T ss_pred             cCCcEEEeccCCCC-CHHHHHHHHHhh
Confidence            88899999999999 999999999875

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.75  E-value=3.9e-18  Score=123.42  Aligned_cols=103  Identities=20%  Similarity=0.258  Sum_probs=80.1

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH-H---HHHH
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE-S---LGRS   75 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~-~---~~~~   75 (173)
                      |+|+++  .++..||+++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+.+.... .   ....
T Consensus        50 ~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~l~~  129 (167)
T cd04161          50 LGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEK  129 (167)
T ss_pred             CCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHHHHHHhcCccc
Confidence            688876  388999999999999999999999999999999887654335799999999999976442111 1   1123


Q ss_pred             HhhhcC--CeEEEEcccCC------cccHHHHHHHHHH
Q psy2792          76 TAVKYN--CTFHEVSVADN------SPAIYQAFDHLLT  105 (173)
Q Consensus        76 ~~~~~~--~~~~e~Sak~g------~~~v~~lf~~l~~  105 (173)
                      ++++.+  +.+++|||++|      . |+++.|+||+.
T Consensus       130 ~~~~~~~~~~~~~~Sa~~g~~~~~~~-g~~~~~~wl~~  166 (167)
T cd04161         130 LVNENKSLCHIEPCSAIEGLGKKIDP-SIVEGLRWLLA  166 (167)
T ss_pred             ccCCCCceEEEEEeEceeCCCCcccc-CHHHHHHHHhc
Confidence            343333  55788999998      7 99999999974

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>cd00157 Rho Rho (Ras homology) family

Probab=99.74  E-value=3.7e-17  Score=117.85  Aligned_cols=101  Identities=20%  Similarity=0.291  Sum_probs=85.9

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCc-----------c
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLR-----------Q   67 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-----------~   67 (173)
                      |+|+++  .+...+++.+|++++|||++++++|.... .|+..+....  .++|+++||||+|+....           .
T Consensus        55 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~  132 (171)
T cd00157          55 TAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYC--PNVPIILVGTKIDLRDDENTLKKLEKGKEP  132 (171)
T ss_pred             CCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC--CCCCEEEEEccHHhhhchhhhhhcccCCCc
Confidence            789987  37778899999999999999999998875 4888887765  589999999999986544           3


Q ss_pred             CCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHH
Q psy2792          68 VDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        68 v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      +..+++..++..+++ .|+++||++|. |++++|++|++
T Consensus       133 v~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~i~~  170 (171)
T cd00157         133 ITPEEGEKLAKEIGAIGYMECSALTQE-GVKEVFEEAIR  170 (171)
T ss_pred             cCHHHHHHHHHHhCCeEEEEeecCCCC-CHHHHHHHHhh
Confidence            456777888888887 89999999999 99999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.73  E-value=3.8e-17  Score=118.90  Aligned_cols=101  Identities=16%  Similarity=0.193  Sum_probs=79.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH-HHHh-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG-RSTA-   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-~~~~-   77 (173)
                      |+|+++.  .+..|++++|++|+|||++++++|.....|+..+.......++|+++|+||+|+...  +..++. ..+. 
T Consensus        66 ~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~--~~~~~i~~~l~~  143 (174)
T cd04153          66 IGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA--MTPAEISESLGL  143 (174)
T ss_pred             CCCCHHHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence            7898773  788899999999999999999999988888877765443357999999999998642  233332 2222 


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                         ...++.+++|||++|. ||+++|++|++
T Consensus       144 ~~~~~~~~~~~~~SA~~g~-gi~e~~~~l~~  173 (174)
T cd04153         144 TSIRDHTWHIQGCCALTGE-GLPEGLDWIAS  173 (174)
T ss_pred             ccccCCceEEEecccCCCC-CHHHHHHHHhc
Confidence               2345678999999999 99999999974

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd00879 Sar1 Sar1 subfamily

Probab=99.73  E-value=3.3e-17  Score=120.57  Aligned_cols=102  Identities=24%  Similarity=0.247  Sum_probs=83.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||+++.++|+....|+..+.+.....+.|+++|+||+|+..  .+..++...+...
T Consensus        70 ~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~--~~~~~~~~~~~~~  147 (190)
T cd00879          70 LGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPG--AVSEEELRQALGL  147 (190)
T ss_pred             CCCCHHHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC--CcCHHHHHHHhCc
Confidence            6888763  67889999999999999999999998888888887654346799999999999863  4566666665542


Q ss_pred             ----------------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 ----------------YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ----------------~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                                      ..+.+++|||++|. ||+++|.+|++.
T Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-gv~e~~~~l~~~  189 (190)
T cd00879         148 YGTTTGKGVSLKVSGIRPIEVFMCSVVKRQ-GYGEAFRWLSQY  189 (190)
T ss_pred             ccccccccccccccCceeEEEEEeEecCCC-ChHHHHHHHHhh
Confidence                            22468999999999 999999999865

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04157 Arl6 Arl6 subfamily

Probab=99.73  E-value=4.7e-17  Score=116.33  Aligned_cols=101  Identities=16%  Similarity=0.120  Sum_probs=78.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.+...  ..++|+++|+||+|+.+..  ..++.....
T Consensus        52 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~--~~~~~~~~l  129 (162)
T cd04157          52 MSGQGKYRGLWEHYYKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL--TAVKITQLL  129 (162)
T ss_pred             CCCCHhhHHHHHHHHccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC--CHHHHHHHh
Confidence            7899874  889999999999999999999999998889888765421  2579999999999986432  222222211


Q ss_pred             h-----hcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          78 V-----KYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        78 ~-----~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      .     ...+.++++||++|. |++++|++|.+
T Consensus       130 ~~~~~~~~~~~~~~~Sa~~g~-gv~~~~~~l~~  161 (162)
T cd04157         130 GLENIKDKPWHIFASNALTGE-GLDEGVQWLQA  161 (162)
T ss_pred             CCccccCceEEEEEeeCCCCC-chHHHHHHHhc
Confidence            1     123458999999999 99999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.72  E-value=6.7e-17  Score=120.51  Aligned_cols=104  Identities=16%  Similarity=0.176  Sum_probs=83.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh------------------CCCCCcEEEEEeCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR------------------AVNNVPVMLLANKLD   61 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~------------------~~~~~piilv~NK~D   61 (173)
                      |+|+++.  ++..||+++|++|+|||+++++||+++..|+.++....                  ...++|+||||||+|
T Consensus        61 taG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~D  140 (202)
T cd04102          61 VGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLD  140 (202)
T ss_pred             cCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECcc
Confidence            7999884  88999999999999999999999999999999997642                  124799999999999


Q ss_pred             CCCCccCCHHH----HHHHhhhcCCeEEEEcccCCc---------ccHHHHHHHHHH
Q psy2792          62 LEHLRQVDESL----GRSTAVKYNCTFHEVSVADNS---------PAIYQAFDHLLT  105 (173)
Q Consensus        62 l~~~~~v~~~~----~~~~~~~~~~~~~e~Sak~g~---------~~v~~lf~~l~~  105 (173)
                      +.+.+.++.+.    ...++.+.+++.++.+++++.         ..+...|+.+++
T Consensus       141 l~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  197 (202)
T cd04102         141 QIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE  197 (202)
T ss_pred             chhhcccchHHHhhHhhhHHHhcCCceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence            98767666553    345788899999999888543         134556666654

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>cd00154 Rab Rab family

Probab=99.72  E-value=8e-17  Score=113.87  Aligned_cols=101  Identities=29%  Similarity=0.406  Sum_probs=89.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...+++++|++|+|||++++++++.+..|+..+.... ...+|+++|+||+|+.....+..++...++..
T Consensus        56 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~~~~~~~~~~~~~~  134 (159)
T cd00154          56 TAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYA-PENIPIILVGNKIDLEDQRQVSTEEAQQFAKE  134 (159)
T ss_pred             cCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEcccccccccccHHHHHHHHHH
Confidence            6777663  77889999999999999999999999999999988865 35799999999999975566778888888888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLL  104 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~  104 (173)
                      .++.++++||+++. |++++|.+|+
T Consensus       135 ~~~~~~~~sa~~~~-~i~~~~~~i~  158 (159)
T cd00154         135 NGLLFFETSAKTGE-NVEELFQSLA  158 (159)
T ss_pred             cCCeEEEEecCCCC-CHHHHHHHHh
Confidence            88999999999999 9999999886

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.72  E-value=3.3e-17  Score=117.04  Aligned_cols=101  Identities=21%  Similarity=0.261  Sum_probs=78.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----   75 (173)
                      |+|+++.  ++..|+.++|++|+|||++++.+|..+..|+.++.......++|+++|+||+|+...  ...++...    
T Consensus        51 ~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~  128 (160)
T cd04156          51 VGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGA--LTAEEITRRFKL  128 (160)
T ss_pred             CCCCHhHHHHHHHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccC--cCHHHHHHHcCC
Confidence            7888763  778899999999999999999999999988888765432357999999999998632  22233222    


Q ss_pred             --HhhhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          76 --TAVKYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        76 --~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                        ++...++.+++|||++|. ||+++|++|++
T Consensus       129 ~~~~~~~~~~~~~~Sa~~~~-gv~~~~~~i~~  159 (160)
T cd04156         129 KKYCSDRDWYVQPCSAVTGE-GLAEAFRKLAS  159 (160)
T ss_pred             cccCCCCcEEEEecccccCC-ChHHHHHHHhc
Confidence              222234578999999999 99999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd04151 Arl1 Arl1 subfamily

Probab=99.72  E-value=2.4e-17  Score=117.87  Aligned_cols=101  Identities=16%  Similarity=0.170  Sum_probs=75.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH-HHh-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR-STA-   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~~-   77 (173)
                      |+|+++.  ++..|+.++|++|+|||++++.++.....|+..+.+.....++|+++|+||+|+.+..  ...+.. .+. 
T Consensus        50 t~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~--~~~~i~~~~~~  127 (158)
T cd04151          50 LGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL--SEAEISEKLGL  127 (158)
T ss_pred             CCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC--CHHHHHHHhCc
Confidence            7898773  7889999999999999999998888777766555432223579999999999986432  222222 221 


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                         ...++.+++|||++|. ||+++|++|++
T Consensus       128 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~  157 (158)
T cd04151         128 SELKDRTWSIFKTSAIKGE-GLDEGMDWLVN  157 (158)
T ss_pred             cccCCCcEEEEEeeccCCC-CHHHHHHHHhc
Confidence               1223569999999999 99999999975

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.72  E-value=1.9e-16  Score=118.97  Aligned_cols=107  Identities=20%  Similarity=0.273  Sum_probs=90.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|+.++|++|+|||+++..+|..+..|+..+....  .++|+++||||+|+.+ +.+..+. ..++..
T Consensus        65 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~i~lv~nK~Dl~~-~~~~~~~-~~~~~~  140 (215)
T PTZ00132         65 TAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC--ENIPIVLVGNKVDVKD-RQVKARQ-ITFHRK  140 (215)
T ss_pred             CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECccCcc-ccCCHHH-HHHHHH
Confidence            7888773  78889999999999999999999999999999998765  6799999999999864 3344333 356677


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      .++.|+++||++|. |++++|.+|++.+...+..
T Consensus       141 ~~~~~~e~Sa~~~~-~v~~~f~~ia~~l~~~p~~  173 (215)
T PTZ00132        141 KNLQYYDISAKSNY-NFEKPFLWLARRLTNDPNL  173 (215)
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHhhcccc
Confidence            78899999999999 9999999999998875543

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.71  E-value=1.1e-16  Score=115.21  Aligned_cols=101  Identities=22%  Similarity=0.302  Sum_probs=81.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..++.++|++|+|||.++++++.....|+..+.+.....++|+++|+||+|+...  +..++...+...
T Consensus        57 t~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~--~~~~~~~~~~~~  134 (167)
T cd04160          57 LGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVEEIKEVFQD  134 (167)
T ss_pred             CCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC--CCHHHHHHHhcc
Confidence            7899874  778899999999999999999999999889888776543467999999999998643  334444444332


Q ss_pred             -------cCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          80 -------YNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        80 -------~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                             .++.++++||++|. |++++|++|++
T Consensus       135 ~~~~~~~~~~~~~~~Sa~~g~-gv~e~~~~l~~  166 (167)
T cd04160         135 KAEEIGRRDCLVLPVSALEGT-GVREGIEWLVE  166 (167)
T ss_pred             ccccccCCceEEEEeeCCCCc-CHHHHHHHHhc
Confidence                   24579999999999 99999999975

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.70  E-value=9.7e-17  Score=114.50  Aligned_cols=101  Identities=21%  Similarity=0.228  Sum_probs=80.6

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA--   77 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~--   77 (173)
                      |+|+++  .++..++.++|++++|||++++++|.....|+..+.......+.|+++|+||+|+....  ..++.....  
T Consensus        50 ~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~  127 (158)
T cd00878          50 VGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL--SVSELIEKLGL  127 (158)
T ss_pred             CCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc--CHHHHHHhhCh
Confidence            788877  38888999999999999999999999999888887765434679999999999987533  223333322  


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                         ....++++++||++|. |++++|++|..
T Consensus       128 ~~~~~~~~~~~~~Sa~~~~-gv~~~~~~l~~  157 (158)
T cd00878         128 EKILGRRWHIQPCSAVTGD-GLDEGLDWLLQ  157 (158)
T ss_pred             hhccCCcEEEEEeeCCCCC-CHHHHHHHHhh
Confidence               2234679999999999 99999999875

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.68  E-value=4.5e-16  Score=114.34  Aligned_cols=102  Identities=20%  Similarity=0.172  Sum_probs=81.1

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .++..|+.++|++|+|+|++++++|.....|+.++.+.....++|+++|+||+|+..  .++.++......-
T Consensus        68 ~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~--~~~~~~i~~~l~l  145 (184)
T smart00178       68 LGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPY--AASEDELRYALGL  145 (184)
T ss_pred             CCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccC--CCCHHHHHHHcCC
Confidence            788876  378899999999999999999999999988888776543235789999999999863  4555555443211


Q ss_pred             ------------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 ------------YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ------------~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                                  ..+.+++|||++|. |++++++||...
T Consensus       146 ~~~~~~~~~~~~~~~~i~~~Sa~~~~-g~~~~~~wl~~~  183 (184)
T smart00178      146 TNTTGSKGKVGVRPLEVFMCSVVRRM-GYGEGFKWLSQY  183 (184)
T ss_pred             CcccccccccCCceeEEEEeecccCC-ChHHHHHHHHhh
Confidence                        13458999999999 999999999864

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01890 LepA LepA subfamily

Probab=99.66  E-value=1.1e-15  Score=111.09  Aligned_cols=98  Identities=13%  Similarity=0.156  Sum_probs=75.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||+++.  ++..|++++|++|+|||+++..++.....|.... .    .++|+++|+||+|+.+..  ..+....+++.
T Consensus        74 t~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~-~----~~~~iiiv~NK~Dl~~~~--~~~~~~~~~~~  146 (179)
T cd01890          74 TPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLAL-E----NNLEIIPVINKIDLPSAD--PERVKQQIEDV  146 (179)
T ss_pred             CCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHH-H----cCCCEEEEEECCCCCcCC--HHHHHHHHHHH
Confidence            8999884  7788999999999999999977777666665332 2    468999999999986422  12233455555


Q ss_pred             cCC---eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNC---TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~---~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      +++   .++++||++|. ||+++|++|+..+
T Consensus       147 ~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~  176 (179)
T cd01890         147 LGLDPSEAILVSAKTGL-GVEDLLEAIVERI  176 (179)
T ss_pred             hCCCcccEEEeeccCCC-CHHHHHHHHHhhC
Confidence            555   48999999999 9999999998765

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=99.65  E-value=7.8e-16  Score=118.00  Aligned_cols=91  Identities=15%  Similarity=0.147  Sum_probs=76.3

Q ss_pred             cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV   87 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~   87 (173)
                      +.+.|++++|++++|||++++. ||+.+..|+..+..    .++|++||+||+||.+.+.+..+....+. ..++.++++
T Consensus        29 L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~----~~i~~vIV~NK~DL~~~~~~~~~~~~~~~-~~g~~v~~~  103 (245)
T TIGR00157        29 LTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEA----QNIEPIIVLNKIDLLDDEDMEKEQLDIYR-NIGYQVLMT  103 (245)
T ss_pred             EECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECcccCCCHHHHHHHHHHHH-HCCCeEEEE
Confidence            7888999999999999999988 89999999987654    56999999999999765554444455444 478899999


Q ss_pred             cccCCcccHHHHHHHHHH
Q psy2792          88 SVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~  105 (173)
                      ||++|. ||+++|+.+..
T Consensus       104 SAktg~-gi~eLf~~l~~  120 (245)
T TIGR00157       104 SSKNQD-GLKELIEALQN  120 (245)
T ss_pred             ecCCch-hHHHHHhhhcC
Confidence            999999 99999988764

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>cd01898 Obg Obg subfamily

Probab=99.65  E-value=1.6e-15  Score=109.25  Aligned_cols=103  Identities=15%  Similarity=0.145  Sum_probs=79.1

Q ss_pred             CCCCCC------ccHhhhcc---cCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLTE------GTLTAMIC---WADGCIIVYSLIDK-ESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e~------~~~~~y~~---~ad~iilv~d~~~~-~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~   70 (173)
                      |||+.+      .+...|++   .+|++|+|||++++ ++++.+..|++++..... ..++|+++|+||+|+.+...+ .
T Consensus        55 tpG~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~  133 (170)
T cd01898          55 IPGLIEGASEGKGLGHRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-F  133 (170)
T ss_pred             cCcccCcccccCCchHHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-H
Confidence            788743      24555554   59999999999999 799999999998877642 146899999999999654443 3


Q ss_pred             HHHHHHhhh-cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          71 SLGRSTAVK-YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        71 ~~~~~~~~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      +....+... .+..++++||+++. |++++|++|++.
T Consensus       134 ~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~i~~~  169 (170)
T cd01898         134 ELLKELLKELWGKPVFPISALTGE-GLDELLRKLAEL  169 (170)
T ss_pred             HHHHHHHhhCCCCCEEEEecCCCC-CHHHHHHHHHhh
Confidence            334444444 36789999999999 999999999864

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.63  E-value=3.4e-15  Score=119.10  Aligned_cols=107  Identities=14%  Similarity=0.111  Sum_probs=84.4

Q ss_pred             CCCCCC------ccHhhh---cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTE------GTLTAM---ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~------~~~~~y---~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |+|+-+      ++...|   +..+|++|+|||+++.++++++..|..++..+... .+.|++||+||+|+.+...+..+
T Consensus       213 ~PGli~ga~~~~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~  292 (335)
T PRK12299        213 IPGLIEGASEGAGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREK  292 (335)
T ss_pred             CCCccCCCCccccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHH
Confidence            677644      344444   55799999999999988899999999999887521 46899999999999765544444


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ....++...++.++++||+++. ||+++|++|.+.+.+
T Consensus       293 ~~~~~~~~~~~~i~~iSAktg~-GI~eL~~~L~~~l~~  329 (335)
T PRK12299        293 RAALELAALGGPVFLISAVTGE-GLDELLRALWELLEE  329 (335)
T ss_pred             HHHHHHHhcCCCEEEEEcCCCC-CHHHHHHHHHHHHHh
Confidence            4555555666889999999999 999999999988765

>PLN00023 GTP-binding protein; Provisional

Probab=99.61  E-value=3.6e-15  Score=117.42  Aligned_cols=81  Identities=15%  Similarity=0.076  Sum_probs=69.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-----------CCCCcEEEEEeCCCCCCCc--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-----------VNNVPVMLLANKLDLEHLR--   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-----------~~~~piilv~NK~Dl~~~~--   66 (173)
                      |||++++  ++..||+++|++|+|||+++++||+++..|+.++.....           ..++|+||||||+||...+  
T Consensus        90 TAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~  169 (334)
T PLN00023         90 VSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT  169 (334)
T ss_pred             CCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc
Confidence            7999884  899999999999999999999999999999999987631           1358999999999996542  


Q ss_pred             -c---CCHHHHHHHhhhcCC
Q psy2792          67 -Q---VDESLGRSTAVKYNC   82 (173)
Q Consensus        67 -~---v~~~~~~~~~~~~~~   82 (173)
                       .   +..+++..||+++++
T Consensus       170 r~~s~~~~e~a~~~A~~~g~  189 (334)
T PLN00023        170 RGSSGNLVDAARQWVEKQGL  189 (334)
T ss_pred             cccccccHHHHHHHHHHcCC
Confidence             2   357889999998874

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.61  E-value=1.2e-14  Score=106.01  Aligned_cols=102  Identities=22%  Similarity=0.274  Sum_probs=82.2

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh--
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV--   78 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~--   78 (173)
                      +|++.  .+++.||.++|++|||+|.+|++.+.+....+..+.......++|++|++||+|+.+  .++.++......  
T Consensus        66 gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~--~~~~~~i~~~l~l~  143 (175)
T PF00025_consen   66 GGQESFRPLWKSYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPD--AMSEEEIKEYLGLE  143 (175)
T ss_dssp             SSSGGGGGGGGGGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTT--SSTHHHHHHHTTGG
T ss_pred             cccccccccceeeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccC--cchhhHHHhhhhhh
Confidence            46655  489999999999999999999999999888888877754446899999999999864  344555544332  


Q ss_pred             ----hcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          79 ----KYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        79 ----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                          ...+.++.|||++|+ |+.+.|+||.+.+
T Consensus       144 ~l~~~~~~~v~~~sa~~g~-Gv~e~l~WL~~~~  175 (175)
T PF00025_consen  144 KLKNKRPWSVFSCSAKTGE-GVDEGLEWLIEQI  175 (175)
T ss_dssp             GTTSSSCEEEEEEBTTTTB-THHHHHHHHHHHH
T ss_pred             hcccCCceEEEeeeccCCc-CHHHHHHHHHhcC
Confidence                234668999999999 9999999999865

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.60  E-value=7.8e-15  Score=105.53  Aligned_cols=87  Identities=11%  Similarity=0.177  Sum_probs=68.4

Q ss_pred             cCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCc
Q psy2792          16 WADGCIIVYSLIDKESF--DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNS   93 (173)
Q Consensus        16 ~ad~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~   93 (173)
                      .+|++|+|||+++..++  +....|+..+....  .++|+++|+||+|+.....+..  ...+....++.+++|||++|.
T Consensus        79 ~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~--~~~pvilv~NK~Dl~~~~~~~~--~~~~~~~~~~~~~~~Sa~~~~  154 (168)
T cd01897          79 LRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF--KNKPVIVVLNKIDLLTFEDLSE--IEEEEELEGEEVLKISTLTEE  154 (168)
T ss_pred             ccCcEEEEEeCCcccccchHHHHHHHHHHHhhc--CcCCeEEEEEccccCchhhHHH--HHHhhhhccCceEEEEecccC
Confidence            36899999999987654  66667888887643  4799999999999975444332  444555556789999999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy2792          94 PAIYQAFDHLLTES  107 (173)
Q Consensus        94 ~~v~~lf~~l~~~i  107 (173)
                       |++++|+++.+.+
T Consensus       155 -gi~~l~~~l~~~~  167 (168)
T cd01897         155 -GVDEVKNKACELL  167 (168)
T ss_pred             -CHHHHHHHHHHHh
Confidence             9999999999876

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.59  E-value=6.8e-15  Score=104.04  Aligned_cols=101  Identities=16%  Similarity=0.180  Sum_probs=77.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST---   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~---   76 (173)
                      |+|+++.  ++..|+.++|++++|||+++..+|.....|+..+.......++|+++|+||+|+.+...  ..+....   
T Consensus        51 ~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~  128 (159)
T cd04159          51 LGGQPRFRSMWERYCRGVNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELIEQMNL  128 (159)
T ss_pred             CCCCHhHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHHHHhCc
Confidence            6788764  77889999999999999999999998888887776543235789999999999865432  2222111   


Q ss_pred             --hhhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                        .....+.++++||++|. |++++|++|.+
T Consensus       129 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~  158 (159)
T cd04159         129 KSITDREVSCYSISCKEKT-NIDIVLDWLIK  158 (159)
T ss_pred             ccccCCceEEEEEEeccCC-ChHHHHHHHhh
Confidence              11234678999999999 99999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.58  E-value=3.7e-15  Score=104.62  Aligned_cols=82  Identities=24%  Similarity=0.158  Sum_probs=65.3

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEEcccC
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEVSVAD   91 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~   91 (173)
                      +++++|++|+|||++++.++.. ..|...+       ..|+++|+||+|+.+ +.+..+++..+++..+. .++++||++
T Consensus        59 ~~~~ad~vilv~d~~~~~s~~~-~~~~~~~-------~~p~ilv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~  129 (142)
T TIGR02528        59 TAADADVIALVQSATDPESRFP-PGFASIF-------VKPVIGLVTKIDLAE-ADVDIERAKELLETAGAEPIFEISSVD  129 (142)
T ss_pred             HhhcCCEEEEEecCCCCCcCCC-hhHHHhc-------cCCeEEEEEeeccCC-cccCHHHHHHHHHHcCCCcEEEEecCC
Confidence            5789999999999999998865 3454321       249999999999864 34456667777777775 799999999


Q ss_pred             CcccHHHHHHHHH
Q psy2792          92 NSPAIYQAFDHLL  104 (173)
Q Consensus        92 g~~~v~~lf~~l~  104 (173)
                      |. |++++|.+|+
T Consensus       130 ~~-gi~~l~~~l~  141 (142)
T TIGR02528       130 EQ-GLEALVDYLN  141 (142)
T ss_pred             CC-CHHHHHHHHh
Confidence            99 9999999875

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>cd04155 Arl3 Arl3 subfamily

Probab=99.58  E-value=1.2e-14  Score=105.15  Aligned_cols=101  Identities=18%  Similarity=0.144  Sum_probs=74.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  .+..+++++|++++|||+++..+|.....|+..+.......++|+++|+||+|+.....  .++.......
T Consensus        65 ~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~~~l~~  142 (173)
T cd04155          65 IGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIAEALNL  142 (173)
T ss_pred             CCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHHHHcCC
Confidence            6777653  67788999999999999999999998888877766543235799999999999864321  2222221111


Q ss_pred             c-----CCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          80 Y-----NCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        80 ~-----~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      .     .+.++++||++|. |++++|+||++
T Consensus       143 ~~~~~~~~~~~~~Sa~~~~-gi~~~~~~l~~  172 (173)
T cd04155         143 HDLRDRTWHIQACSAKTGE-GLQEGMNWVCK  172 (173)
T ss_pred             cccCCCeEEEEEeECCCCC-CHHHHHHHHhc
Confidence            1     1247899999999 99999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.52  E-value=1.1e-13  Score=110.23  Aligned_cols=104  Identities=13%  Similarity=0.098  Sum_probs=80.6

Q ss_pred             CCCCCC------ccHhhhcc---cCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccC
Q psy2792           2 TIGLTE------GTLTAMIC---WADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQV   68 (173)
Q Consensus         2 TaG~e~------~~~~~y~~---~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v   68 (173)
                      |||+.+      ++...|++   .+|++|+|+|+++.   ++++.+..|..++..+.. ..+.|++||+||+|+..... 
T Consensus       212 ~PGli~~a~~~~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-  290 (329)
T TIGR02729       212 IPGLIEGASEGAGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-  290 (329)
T ss_pred             CCCcccCCcccccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-
Confidence            678754      35555655   69999999999987   688888889888877642 14689999999999975432 


Q ss_pred             CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          69 DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        69 ~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ..+....+++..+..++++||+++. ||+++|.+|.+.+
T Consensus       291 ~~~~~~~l~~~~~~~vi~iSAktg~-GI~eL~~~I~~~l  328 (329)
T TIGR02729       291 LAELLKELKKALGKPVFPISALTGE-GLDELLYALAELL  328 (329)
T ss_pred             HHHHHHHHHHHcCCcEEEEEccCCc-CHHHHHHHHHHHh
Confidence            2334455666667889999999999 9999999998754

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>KOG0096|consensus

Probab=99.51  E-value=1.2e-14  Score=104.71  Aligned_cols=107  Identities=24%  Similarity=0.347  Sum_probs=91.0

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||||.  ++..-||-++.++|++||++..-++.++..|...+.+.+  .++||+++|||.|... +.+ ......+-..
T Consensus        66 tagqEk~gglrdgyyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~-r~~-k~k~v~~~rk  141 (216)
T KOG0096|consen   66 TAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVR--ENIPIVLCGNKVDIKA-RKV-KAKPVSFHRK  141 (216)
T ss_pred             cccceeecccccccEEecceeEEEeeeeehhhhhcchHHHHHHHHHh--cCCCeeeeccceeccc-ccc-ccccceeeec
Confidence            899998  489999999999999999999999999999999999988  6799999999999864 332 1223334556


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      .++.||++||+.+. |.+..|.|+++.+.-.+..
T Consensus       142 knl~y~~iSaksn~-NfekPFl~LarKl~G~p~L  174 (216)
T KOG0096|consen  142 KNLQYYEISAKSNY-NFERPFLWLARKLTGDPSL  174 (216)
T ss_pred             ccceeEEeeccccc-ccccchHHHhhhhcCCCCe
Confidence            67899999999999 9999999999998876554

>cd01878 HflX HflX subfamily

Probab=99.50  E-value=1.4e-13  Score=102.36  Aligned_cols=87  Identities=14%  Similarity=0.106  Sum_probs=69.3

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCc
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNS   93 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~   93 (173)
                      +.++|++++|+|++++.++.....|...+.... ..++|+++|+||+|+.....+     ..++...+..++++||+++.
T Consensus       118 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~-~~~~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~  191 (204)
T cd01878         118 VAEADLLLHVVDASDPDYEEQIETVEKVLKELG-AEDIPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGE  191 (204)
T ss_pred             HhcCCeEEEEEECCCCChhhHHHHHHHHHHHcC-cCCCCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCC
Confidence            678999999999999988888877877776544 356899999999998653321     13344456789999999999


Q ss_pred             ccHHHHHHHHHHHH
Q psy2792          94 PAIYQAFDHLLTES  107 (173)
Q Consensus        94 ~~v~~lf~~l~~~i  107 (173)
                       |++++|++|...+
T Consensus       192 -gi~~l~~~L~~~~  204 (204)
T cd01878         192 -GLDELLEAIEELL  204 (204)
T ss_pred             -CHHHHHHHHHhhC
Confidence             9999999998653

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0073|consensus

Probab=99.49  E-value=5.6e-13  Score=94.11  Aligned_cols=104  Identities=18%  Similarity=0.175  Sum_probs=82.7

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH------HH
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL------GR   74 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~------~~   74 (173)
                      .||-.  ..|++||..+|++|+|||.+|+..|++....+..+.....-...|++|++||.|+..  .++.++      ..
T Consensus        68 GGq~~lr~~W~nYfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~--~l~~~~i~~~~~L~  145 (185)
T KOG0073|consen   68 GGQKTLRSYWKNYFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPG--ALSLEEISKALDLE  145 (185)
T ss_pred             CCcchhHHHHHHhhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc--ccCHHHHHHhhCHH
Confidence            35554  489999999999999999999999998877776665533335689999999999973  233332      23


Q ss_pred             HHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        75 ~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++...+..+-|||.+|+ ++.+.|.||+..+.+
T Consensus       146 ~l~ks~~~~l~~cs~~tge-~l~~gidWL~~~l~~  179 (185)
T KOG0073|consen  146 ELAKSHHWRLVKCSAVTGE-DLLEGIDWLCDDLMS  179 (185)
T ss_pred             HhccccCceEEEEeccccc-cHHHHHHHHHHHHHH
Confidence            4556677899999999999 999999999998876

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.49  E-value=1.7e-13  Score=98.93  Aligned_cols=94  Identities=18%  Similarity=0.216  Sum_probs=71.9

Q ss_pred             hhcccCcEEEEEEeCCCh------hhHHHHHHHHHHHHhhhCC------CCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792          12 AMICWADGCIIVYSLIDK------ESFDYAVSTLQNLQRHRAV------NNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~------~s~~~~~~~~~~i~~~~~~------~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      .+++++|++++|+|.++.      .+++....|..++......      .+.|+++|+||+|+.....+...........
T Consensus        70 ~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~  149 (176)
T cd01881          70 AHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALE  149 (176)
T ss_pred             HHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcC
Confidence            457889999999999998      5788888888887754311      3689999999999975444333222334444


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .+..++++||+++. |++++++++...
T Consensus       150 ~~~~~~~~Sa~~~~-gl~~l~~~l~~~  175 (176)
T cd01881         150 EGAEVVPISAKTEE-GLDELIRAIYEL  175 (176)
T ss_pred             CCCCEEEEehhhhc-CHHHHHHHHHhh
Confidence            56779999999999 999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG4423|consensus

Probab=99.47  E-value=7.1e-14  Score=100.63  Aligned_cols=109  Identities=21%  Similarity=0.176  Sum_probs=90.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhh---CCCCCcEEEEEeCCCCCCCccCC-HHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHR---AVNNVPVMLLANKLDLEHLRQVD-ESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~-~~~~~~   75 (173)
                      -|||+++  ++..||+.+++..+|||++...+|+....|..++..-.   ....+|+|+.+||||........ ......
T Consensus        82 IagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~  161 (229)
T KOG4423|consen   82 IAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDN  161 (229)
T ss_pred             chhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHH
Confidence            3799984  99999999999999999999999999999998876432   23568899999999986433222 355677


Q ss_pred             HhhhcCCe-EEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          76 TAVKYNCT-FHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        76 ~~~~~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +++++|+. ++|+|+|.+. |+.|+-..|++.+.-+.
T Consensus       162 f~kengf~gwtets~Kenk-ni~Ea~r~lVe~~lvnd  197 (229)
T KOG4423|consen  162 FKKENGFEGWTETSAKENK-NIPEAQRELVEKILVND  197 (229)
T ss_pred             HHhccCccceeeecccccc-ChhHHHHHHHHHHHhhc
Confidence            88888866 8999999999 99999999999887643

>cd04171 SelB SelB subfamily

Probab=99.47  E-value=3.2e-13  Score=96.41  Aligned_cols=96  Identities=15%  Similarity=-0.003  Sum_probs=65.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGR   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~   74 (173)
                      |||+++.  ....++.++|++|+|||+++   +++++.+.    .+...   ...|+++|+||+|+.+...  ...++..
T Consensus        58 tpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~----~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~  130 (164)
T cd04171          58 VPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLE----ILELL---GIKRGLVVLTKADLVDEDWLELVEEEIR  130 (164)
T ss_pred             CCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHH----HHHHh---CCCcEEEEEECccccCHHHHHHHHHHHH
Confidence            8999874  45567889999999999987   44444332    22221   2248999999999964321  1122333


Q ss_pred             HHhhh---cCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          75 STAVK---YNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        75 ~~~~~---~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      .....   .+..++++||+++. |++++|+.+..
T Consensus       131 ~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~  163 (164)
T cd04171         131 ELLAGTFLADAPIFPVSAVTGE-GIEELKEYLDE  163 (164)
T ss_pred             HHHHhcCcCCCcEEEEeCCCCc-CHHHHHHHHhh
Confidence            33333   35789999999999 99999998764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0070|consensus

Probab=99.47  E-value=5.9e-13  Score=95.81  Aligned_cols=104  Identities=18%  Similarity=0.236  Sum_probs=83.7

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-----
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-----   75 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-----   75 (173)
                      .||+.  .++++||.+++++|||+|.+|++.+.+....+..+....+..++|+++.+||.|++..-  +..+...     
T Consensus        69 GGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~  146 (181)
T KOG0070|consen   69 GGQEKLRPLWKHYFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL--SAAEITNKLGLH  146 (181)
T ss_pred             CCCcccccchhhhccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC--CHHHHHhHhhhh
Confidence            57876  49999999999999999999999999998888888777645689999999999997533  3333322     


Q ss_pred             HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      -.....+.+..|+|.+|+ |+.+.++||...+..
T Consensus       147 ~l~~~~w~iq~~~a~~G~-GL~egl~wl~~~~~~  179 (181)
T KOG0070|consen  147 SLRSRNWHIQSTCAISGE-GLYEGLDWLSNNLKK  179 (181)
T ss_pred             ccCCCCcEEeeccccccc-cHHHHHHHHHHHHhc
Confidence            222344667899999999 999999999988754

>TIGR00436 era GTP-binding protein Era

Probab=99.46  E-value=3.9e-13  Score=104.50  Aligned_cols=112  Identities=19%  Similarity=0.061  Sum_probs=81.1

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+.+.          ....++.++|++++|+|+++..+++  ..++..+..    .+.|+++|+||+|+.+...+ ..
T Consensus        55 TPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~--~~i~~~l~~----~~~p~ilV~NK~Dl~~~~~~-~~  127 (270)
T TIGR00436        55 TPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG--EFVLTKLQN----LKRPVVLTRNKLDNKFKDKL-LP  127 (270)
T ss_pred             CcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH--HHHHHHHHh----cCCCEEEEEECeeCCCHHHH-HH
Confidence            8888652          1345789999999999999876664  334444443    35899999999998642221 22


Q ss_pred             HHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCCCCCccccccc
Q psy2792          72 LGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKF  121 (173)
Q Consensus        72 ~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~~  121 (173)
                      ....++...+. .++++||++|. |++++++.|.+.+.+.+..+++.....
T Consensus       128 ~~~~~~~~~~~~~v~~iSA~~g~-gi~~L~~~l~~~l~~~~~~~~~~~~t~  177 (270)
T TIGR00436       128 LIDKYAILEDFKDIVPISALTGD-NTSFLAAFIEVHLPEGPFRYPEDYVTD  177 (270)
T ss_pred             HHHHHHhhcCCCceEEEecCCCC-CHHHHHHHHHHhCCCCCCCCCCcccCC
Confidence            33344444444 68999999999 999999999999999888777665443

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.46  E-value=7.6e-13  Score=93.95  Aligned_cols=96  Identities=14%  Similarity=0.033  Sum_probs=73.2

Q ss_pred             CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.        +...|+.  ++|++|+|+|.+++++.   ..|...+..    .++|+++|+||+|+.+...+..+
T Consensus        50 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~----~~~~~iiv~NK~Dl~~~~~~~~~  122 (158)
T cd01879          50 LPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNLERN---LYLTLQLLE----LGLPVVVALNMIDEAEKRGIKID  122 (158)
T ss_pred             CCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcchhH---HHHHHHHHH----cCCCEEEEEehhhhcccccchhh
Confidence            8898762        4567775  99999999999886543   344444443    35899999999999765444333


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                       ...++..+++.++++||+++. |+.++|++|...
T Consensus       123 -~~~~~~~~~~~~~~iSa~~~~-~~~~l~~~l~~~  155 (158)
T cd01879         123 -LDKLSELLGVPVVPTSARKGE-GIDELKDAIAEL  155 (158)
T ss_pred             -HHHHHHhhCCCeEEEEccCCC-CHHHHHHHHHHH
Confidence             456667778899999999999 999999999875

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.46  E-value=5.4e-13  Score=95.82  Aligned_cols=97  Identities=20%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             CCCCCCc------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH
Q psy2792           2 TIGLTEG------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS   75 (173)
Q Consensus         2 TaG~e~~------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~   75 (173)
                      |||+...      -...++.++|++|+|||+++.+++.  ..|+..+   .  .+.|+++|+||+|+.+   ...+....
T Consensus        44 tpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~~s~~--~~~~~~~---~--~~~~ii~v~nK~Dl~~---~~~~~~~~  113 (158)
T PRK15467         44 TPGEYFSHPRWYHALITTLQDVDMLIYVHGANDPESRL--PAGLLDI---G--VSKRQIAVISKTDMPD---ADVAATRK  113 (158)
T ss_pred             CCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCccccc--CHHHHhc---c--CCCCeEEEEEccccCc---ccHHHHHH
Confidence            7887431      1123478999999999999887763  3455443   1  3578999999999854   23556667


Q ss_pred             HhhhcCC--eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 TAVKYNC--TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~~~~~--~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++.+.++  +++++||++|. ||+++|..+.+.+.+
T Consensus       114 ~~~~~~~~~p~~~~Sa~~g~-gi~~l~~~l~~~~~~  148 (158)
T PRK15467        114 LLLETGFEEPIFELNSHDPQ-SVQQLVDYLASLTKQ  148 (158)
T ss_pred             HHHHcCCCCCEEEEECCCcc-CHHHHHHHHHHhchh
Confidence            7777774  79999999999 999999999887654

>PRK15494 era GTPase Era; Provisional

Probab=99.46  E-value=4.4e-13  Score=107.37  Aligned_cols=114  Identities=17%  Similarity=0.137  Sum_probs=82.8

Q ss_pred             CCCCCCc---cHh-------hhcccCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLTEG---TLT-------AMICWADGCIIVYSLIDKESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e~~---~~~-------~y~~~ad~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~   70 (173)
                      |||+.+.   +..       .++.+||++|+|+|.++  +|..... |+..+...    +.|.++|+||+|+.+.   ..
T Consensus       107 TpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~--s~~~~~~~il~~l~~~----~~p~IlViNKiDl~~~---~~  177 (339)
T PRK15494        107 TPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK--SFDDITHNILDKLRSL----NIVPIFLLNKIDIESK---YL  177 (339)
T ss_pred             CCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC--CCCHHHHHHHHHHHhc----CCCEEEEEEhhcCccc---cH
Confidence            8998541   221       34789999999999765  4655544 55555442    4677899999998642   23


Q ss_pred             HHHHHHhhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcccccccchhc
Q psy2792          71 SLGRSTAVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTK  125 (173)
Q Consensus        71 ~~~~~~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~  125 (173)
                      .+...++...+  ..+|++||++|. |++++|++|+..+.++++.+++...+..+.+
T Consensus       178 ~~~~~~l~~~~~~~~i~~iSAktg~-gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~  233 (339)
T PRK15494        178 NDIKAFLTENHPDSLLFPISALSGK-NIDGLLEYITSKAKISPWLYAEDDITDLPMR  233 (339)
T ss_pred             HHHHHHHHhcCCCcEEEEEeccCcc-CHHHHHHHHHHhCCCCCCCCCCCCCCCCCHH
Confidence            44555554443  579999999999 9999999999999999999987765554443

>KOG0075|consensus

Probab=99.45  E-value=1.8e-13  Score=95.10  Aligned_cols=103  Identities=17%  Similarity=0.220  Sum_probs=79.3

Q ss_pred             CCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH----
Q psy2792           3 IGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST----   76 (173)
Q Consensus         3 aG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~----   76 (173)
                      +||.++  +++.|+++++++++|+|.+|++.++.....+..+.....-..+|++++|||.|++.  ..+......-    
T Consensus        73 gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~--AL~~~~li~rmgL~  150 (186)
T KOG0075|consen   73 GGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPG--ALSKIALIERMGLS  150 (186)
T ss_pred             CCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcc--cccHHHHHHHhCcc
Confidence            688875  99999999999999999999988887777776666554347899999999999874  2333222211    


Q ss_pred             -hhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          77 -AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        77 -~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                       .....+.+|.+|+++.. |++.+.+||++...
T Consensus       151 sitdREvcC~siScke~~-Nid~~~~Wli~hsk  182 (186)
T KOG0075|consen  151 SITDREVCCFSISCKEKV-NIDITLDWLIEHSK  182 (186)
T ss_pred             ccccceEEEEEEEEcCCc-cHHHHHHHHHHHhh
Confidence             12223568999999999 99999999997643

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.45  E-value=8.2e-13  Score=99.10  Aligned_cols=108  Identities=25%  Similarity=0.244  Sum_probs=83.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID-KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR------------   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~-~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------   66 (173)
                      ||||++.  +++.|+.+++++++|||.++ ..+++....|+..+.... ....|+++|+||+|+....            
T Consensus        61 t~gq~~~~~~~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~  139 (219)
T COG1100          61 TAGQEEYRSLRPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELA-PDDVPILLVGNKIDLFDEQSSSEEILNQLNR  139 (219)
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhC-CCCceEEEEecccccccchhHHHHHHhhhhc
Confidence            8999984  99999999999999999999 445666678999988876 2469999999999997653            


Q ss_pred             cCCHHHHHHHhhh---cCCeEEEEccc--CCcccHHHHHHHHHHHHhcCC
Q psy2792          67 QVDESLGRSTAVK---YNCTFHEVSVA--DNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        67 ~v~~~~~~~~~~~---~~~~~~e~Sak--~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .+........+..   ....++++|++  ++. +|.++|..+...+.+..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~-~v~~~~~~~~~~~~~~~  188 (219)
T COG1100         140 EVVLLVLAPKAVLPEVANPALLETSAKSLTGP-NVNELFKELLRKLLEEI  188 (219)
T ss_pred             CcchhhhHhHHhhhhhcccceeEeecccCCCc-CHHHHHHHHHHHHHHhh
Confidence            2222222222222   23348999999  999 99999999999887543

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.45  E-value=1.4e-12  Score=90.51  Aligned_cols=102  Identities=27%  Similarity=0.378  Sum_probs=76.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH-HHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL-GRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~-~~~~~~   78 (173)
                      |+|++..  ....++..+|++++|||++++.+++....|............+|+++|+||+|+.......... ......
T Consensus        52 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~~~~~~~~  131 (157)
T cd00882          52 TAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAK  131 (157)
T ss_pred             cCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHHHHHHHHh
Confidence            5677653  5577899999999999999999999888873333322224689999999999986543332222 334455


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHH
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLL  104 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~  104 (173)
                      ..+..++++|++.+. |+++++++|.
T Consensus       132 ~~~~~~~~~s~~~~~-~i~~~~~~l~  156 (157)
T cd00882         132 ELGVPYFETSAKTGE-NVEELFEELA  156 (157)
T ss_pred             hcCCcEEEEecCCCC-ChHHHHHHHh
Confidence            556889999999999 9999999886

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.41  E-value=3.4e-12  Score=104.60  Aligned_cols=106  Identities=15%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             CCCCCC------ccHhhhcc---cCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccC
Q psy2792           2 TIGLTE------GTLTAMIC---WADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQV   68 (173)
Q Consensus         2 TaG~e~------~~~~~y~~---~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v   68 (173)
                      |||+.+      ++...|++   .+|++|+|+|+++.   ++++++..|..++..+.. ..+.|++||+||+||..    
T Consensus       213 ~PGliega~~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~----  288 (424)
T PRK12297        213 IPGLIEGASEGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPE----  288 (424)
T ss_pred             CCCCcccccccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcC----
Confidence            677643      35566654   59999999999865   678888889888887642 14689999999999843    


Q ss_pred             CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          69 DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        69 ~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      ..+....+++.++..++++||+++. |+++++++|.+.+.+.+.
T Consensus       289 ~~e~l~~l~~~l~~~i~~iSA~tge-GI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        289 AEENLEEFKEKLGPKVFPISALTGQ-GLDELLYAVAELLEETPE  331 (424)
T ss_pred             CHHHHHHHHHHhCCcEEEEeCCCCC-CHHHHHHHHHHHHHhCcc
Confidence            1344555666666789999999999 999999999988876543

>KOG0076|consensus

Probab=99.40  E-value=5.1e-13  Score=95.17  Aligned_cols=105  Identities=20%  Similarity=0.290  Sum_probs=84.2

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---h
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST---A   77 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~---~   77 (173)
                      .||+.  +++..||..|+++|+++|.+|++.|+.....++.+..+....++|+++.+||.|+.+.-+  ..+....   +
T Consensus        77 gGQe~lrSlw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~El~~~~~~~  154 (197)
T KOG0076|consen   77 GGQESLRSLWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAELDGVFGLA  154 (197)
T ss_pred             CChHHHHHHHHHHHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHHHHHHhhhh
Confidence            46665  599999999999999999999999999988887777665557899999999999975433  2232222   2


Q ss_pred             hh---cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          78 VK---YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        78 ~~---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +.   ..+.+..|||.+|+ ||++..+|++..+..+
T Consensus       155 e~~~~rd~~~~pvSal~ge-gv~egi~w~v~~~~kn  189 (197)
T KOG0076|consen  155 ELIPRRDNPFQPVSALTGE-GVKEGIEWLVKKLEKN  189 (197)
T ss_pred             hhcCCccCccccchhhhcc-cHHHHHHHHHHHHhhc
Confidence            22   23668999999999 9999999999988775

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.38  E-value=3.2e-12  Score=102.76  Aligned_cols=86  Identities=15%  Similarity=0.076  Sum_probs=65.7

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN   92 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g   92 (173)
                      ++.+||++|+|||++++.+++++..|...+.... ..++|+++|+||+|+.....     ...+. .....++++||++|
T Consensus       265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~-~~~~piIlV~NK~Dl~~~~~-----v~~~~-~~~~~~i~iSAktg  337 (351)
T TIGR03156       265 EVREADLLLHVVDASDPDREEQIEAVEKVLEELG-AEDIPQLLVYNKIDLLDEPR-----IERLE-EGYPEAVFVSAKTG  337 (351)
T ss_pred             HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhc-cCCCCEEEEEEeecCCChHh-----HHHHH-hCCCCEEEEEccCC
Confidence            5889999999999999988888877766665543 34789999999999864222     11111 12245899999999


Q ss_pred             cccHHHHHHHHHHH
Q psy2792          93 SPAIYQAFDHLLTE  106 (173)
Q Consensus        93 ~~~v~~lf~~l~~~  106 (173)
                      . |+++++++|.+.
T Consensus       338 ~-GI~eL~~~I~~~  350 (351)
T TIGR03156       338 E-GLDLLLEAIAER  350 (351)
T ss_pred             C-CHHHHHHHHHhh
Confidence            9 999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.38  E-value=2.6e-12  Score=106.08  Aligned_cols=94  Identities=21%  Similarity=0.130  Sum_probs=73.7

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.          ....|++++|++|+|||++++.+++..  |+..+..    .++|+++|+||+|+...      
T Consensus       258 TaG~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~--~l~~~~~----~~~piIlV~NK~Dl~~~------  325 (442)
T TIGR00450       258 TAGIREHADFVERLGIEKSFKAIKQADLVIYVLDASQPLTKDDF--LIIDLNK----SKKPFILVLNKIDLKIN------  325 (442)
T ss_pred             CCCcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCCCCChhHH--HHHHHhh----CCCCEEEEEECccCCCc------
Confidence            8999652          235689999999999999998888765  7766643    46899999999998642      


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ....++..++..++++||++ . ||+++|+.|.+.+.+
T Consensus       326 ~~~~~~~~~~~~~~~vSak~-~-gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       326 SLEFFVSSKVLNSSNLSAKQ-L-KIKALVDLLTQKINA  361 (442)
T ss_pred             chhhhhhhcCCceEEEEEec-C-CHHHHHHHHHHHHHH
Confidence            12344566677899999998 6 899999999987765

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.38  E-value=2.8e-12  Score=94.87  Aligned_cols=90  Identities=12%  Similarity=0.079  Sum_probs=62.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHh-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTA-   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~-   77 (173)
                      |||++++  ....|++++|++|+|||+++. .+.....|+..+..    .++|+++|+||+|+...+.. ..++...+. 
T Consensus        72 tpG~~~~~~~~~~~~~~~d~~ilV~d~~~~-~~~~~~~~~~~~~~----~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~  146 (194)
T cd01891          72 TPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPDARPEEVVDEVFDLFI  146 (194)
T ss_pred             CCCcHHHHHHHHHHHHhcCEEEEEEECCCC-ccHHHHHHHHHHHH----cCCCEEEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            8999884  778899999999999999873 23333444444433    46899999999999643221 123333333 


Q ss_pred             ------hhcCCeEEEEcccCCcccHH
Q psy2792          78 ------VKYNCTFHEVSVADNSPAIY   97 (173)
Q Consensus        78 ------~~~~~~~~e~Sak~g~~~v~   97 (173)
                            ...++.++++||++|. |+.
T Consensus       147 ~~~~~~~~~~~~iv~~Sa~~g~-~~~  171 (194)
T cd01891         147 ELGATEEQLDFPVLYASAKNGW-ASL  171 (194)
T ss_pred             HhCCccccCccCEEEeehhccc-ccc
Confidence                  2236789999999997 663

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.37  E-value=2.9e-12  Score=109.29  Aligned_cols=100  Identities=12%  Similarity=0.153  Sum_probs=76.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||++++  ....+++.||++|+|||+++..+++....|...+.     .++|+++|+||+|+.+..  ..+...++...
T Consensus        77 TPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~-----~~ipiIiViNKiDl~~~~--~~~~~~el~~~  149 (595)
T TIGR01393        77 TPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE-----NDLEIIPVINKIDLPSAD--PERVKKEIEEV  149 (595)
T ss_pred             CCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH-----cCCCEEEEEECcCCCccC--HHHHHHHHHHH
Confidence            8999885  67789999999999999998766666666654332     358999999999986422  12233445555


Q ss_pred             cCC---eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNC---TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~---~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++   .++++||++|. ||+++|++|++.+..
T Consensus       150 lg~~~~~vi~vSAktG~-GI~~Lle~I~~~lp~  181 (595)
T TIGR01393       150 IGLDASEAILASAKTGI-GIEEILEAIVKRVPP  181 (595)
T ss_pred             hCCCcceEEEeeccCCC-CHHHHHHHHHHhCCC
Confidence            554   48999999999 999999999988764

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd01894 EngA1 EngA1 subfamily

Probab=99.35  E-value=6.3e-12  Score=88.93  Aligned_cols=95  Identities=18%  Similarity=0.112  Sum_probs=66.0

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |+|.++.          ....+++++|++++|+|..+..+.... .+...+..    .+.|+++|+||+|+.+....   
T Consensus        52 tpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~-~~~~~~~~----~~~piiiv~nK~D~~~~~~~---  123 (157)
T cd01894          52 TGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADE-EIAKYLRK----SKKPVILVVNKVDNIKEEDE---  123 (157)
T ss_pred             CCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHH-HHHHHHHh----cCCCEEEEEECcccCChHHH---
Confidence            7888763          123568899999999999876444332 12222222    35899999999998653221   


Q ss_pred             HHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          72 LGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        72 ~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                        .......+. .++++||+++. |++++|++|++.+
T Consensus       124 --~~~~~~~~~~~~~~~Sa~~~~-gv~~l~~~l~~~~  157 (157)
T cd01894         124 --AAEFYSLGFGEPIPISAEHGR-GIGDLLDAILELL  157 (157)
T ss_pred             --HHHHHhcCCCCeEEEecccCC-CHHHHHHHHHhhC
Confidence              222334555 68999999999 9999999998753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.35  E-value=4e-12  Score=105.34  Aligned_cols=92  Identities=17%  Similarity=0.138  Sum_probs=71.6

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.          ....++.++|++|+|||++++.++++...|..     .  .+.|+++|+||+|+.....+.  
T Consensus       270 T~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~-----~--~~~piiiV~NK~DL~~~~~~~--  340 (449)
T PRK05291        270 TAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASEPLTEEDDEILEE-----L--KDKPVIVVLNKADLTGEIDLE--  340 (449)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh-----c--CCCCcEEEEEhhhccccchhh--
Confidence            8998762          13457999999999999999888876655543     2  568999999999996533221  


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                            ...+..++++||++|. |+++++++|.+.+..
T Consensus       341 ------~~~~~~~i~iSAktg~-GI~~L~~~L~~~l~~  371 (449)
T PRK05291        341 ------EENGKPVIRISAKTGE-GIDELREAIKELAFG  371 (449)
T ss_pred             ------hccCCceEEEEeeCCC-CHHHHHHHHHHHHhh
Confidence                  2345679999999999 999999999988754

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.34  E-value=3.5e-12  Score=106.34  Aligned_cols=92  Identities=17%  Similarity=0.013  Sum_probs=66.3

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHH-HHhhhcCCeEEEEc
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGR-STAVKYNCTFHEVS   88 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~-~~~~~~~~~~~e~S   88 (173)
                      .++++||++|+|||+++..++.++. |+..+..    .++|+|||+||+|+.+....  ...+.. .+.....++++++|
T Consensus       289 ~~i~~ad~vilV~Da~~~~s~~~~~-~~~~~~~----~~~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~S  363 (472)
T PRK03003        289 AAIEAAEVAVVLIDASEPISEQDQR-VLSMVIE----AGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNIS  363 (472)
T ss_pred             HHHhcCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEE
Confidence            4688999999999999988887764 4444443    46899999999999642110  011111 22222346789999


Q ss_pred             ccCCcccHHHHHHHHHHHHhc
Q psy2792          89 VADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~i~~  109 (173)
                      |++|. ||+++|+.+...+..
T Consensus       364 Ak~g~-gv~~lf~~i~~~~~~  383 (472)
T PRK03003        364 AKTGR-AVDKLVPALETALES  383 (472)
T ss_pred             CCCCC-CHHHHHHHHHHHHHH
Confidence            99999 999999999887654

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.33  E-value=8.8e-12  Score=89.39  Aligned_cols=98  Identities=15%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~   75 (173)
                      |+|++..  ++..++..+|++++|+|+++.   ++++.+    ..+..    .++|+++|+||+|+....... ......
T Consensus        57 tpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~----~~~~~----~~~p~ivv~NK~Dl~~~~~~~~~~~~~~  128 (168)
T cd01887          57 TPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAI----KLAKA----ANVPFIVALNKIDKPNANPERVKNELSE  128 (168)
T ss_pred             CCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHH----HHHHH----cCCCEEEEEEceecccccHHHHHHHHHH
Confidence            7898763  677889999999999999884   333322    22222    458999999999986422100 011111


Q ss_pred             Hhh----h--cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          76 TAV----K--YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        76 ~~~----~--~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +..    .  ..+.++++||++|. |++++|++|.+...
T Consensus       129 ~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~  166 (168)
T cd01887         129 LGLQGEDEWGGDVQIVPTSAKTGE-GIDDLLEAILLLAE  166 (168)
T ss_pred             hhccccccccCcCcEEEeecccCC-CHHHHHHHHHHhhh
Confidence            111    1  13579999999999 99999999987543

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.33  E-value=1.4e-11  Score=86.47  Aligned_cols=99  Identities=17%  Similarity=0.229  Sum_probs=77.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDK-ESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|+++.  ++..++++++++++++|+... .++.... .|...+..... .+.|+++|+||+|+.... +.......+.
T Consensus        57 ~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~~-~~~~~~~~~~  134 (161)
T TIGR00231        57 TAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDAK-LKTHVAFLFA  134 (161)
T ss_pred             CCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcch-hhHHHHHHHh
Confidence            6787763  778889999999999999887 7777765 68777777652 279999999999996533 3333444444


Q ss_pred             hhcCCeEEEEcccCCcccHHHHHHHH
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAFDHL  103 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf~~l  103 (173)
                      ......++++||++|. |+.++|++|
T Consensus       135 ~~~~~~~~~~sa~~~~-gv~~~~~~l  159 (161)
T TIGR00231       135 KLNGEPIIPLSAETGK-NIDSAFKIV  159 (161)
T ss_pred             hccCCceEEeecCCCC-CHHHHHHHh
Confidence            4445679999999999 999999886

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.33  E-value=4.9e-12  Score=94.38  Aligned_cols=100  Identities=12%  Similarity=0.086  Sum_probs=66.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLG   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~   73 (173)
                      |+|+++.  -....+.++|++|+|+|++++    ++++.+..|    ...   ...|++||+||+|+.+....  ..++.
T Consensus        90 tPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~----~~~---~~~~iiivvNK~Dl~~~~~~~~~~~~i  162 (203)
T cd01888          90 CPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAAL----EIM---GLKHIIIVQNKIDLVKEEQALENYEQI  162 (203)
T ss_pred             CCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHH----HHc---CCCcEEEEEEchhccCHHHHHHHHHHH
Confidence            7787653  233346678999999999873    334433322    221   22479999999998642211  11223


Q ss_pred             HHHhhhc---CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          74 RSTAVKY---NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        74 ~~~~~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++...   ++.++++||++|. |++++|++|.+.+.+
T Consensus       163 ~~~~~~~~~~~~~i~~vSA~~g~-gi~~L~~~l~~~l~~  200 (203)
T cd01888         163 KKFVKGTIAENAPIIPISAQLKY-NIDVLLEYIVKKIPT  200 (203)
T ss_pred             HHHHhccccCCCcEEEEeCCCCC-CHHHHHHHHHHhCCC
Confidence            3333332   5679999999999 999999999987765

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK11058 GTPase HflX; Provisional

Probab=99.33  E-value=1.5e-11  Score=101.12  Aligned_cols=101  Identities=17%  Similarity=0.096  Sum_probs=72.1

Q ss_pred             CCCCCCc----cH------hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----TL------TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----~~------~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+.+.    +.      ..++++||++|+|+|++++.+++.+..|...+.... ..++|+++|+||+|+.....   .
T Consensus       252 TaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~-~~~~pvIiV~NKiDL~~~~~---~  327 (426)
T PRK11058        252 TVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEID-AHEIPTLLVMNKIDMLDDFE---P  327 (426)
T ss_pred             cCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhc-cCCCCEEEEEEcccCCCchh---H
Confidence            8898441    22      234789999999999999988888766555454433 25789999999999864211   1


Q ss_pred             HHHHHhhhcCCe-EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          72 LGRSTAVKYNCT-FHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        72 ~~~~~~~~~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...  ....+.. ++++||++|. |++++|++|...+..
T Consensus       328 ~~~--~~~~~~~~~v~ISAktG~-GIdeL~e~I~~~l~~  363 (426)
T PRK11058        328 RID--RDEENKPIRVWLSAQTGA-GIPLLFQALTERLSG  363 (426)
T ss_pred             HHH--HHhcCCCceEEEeCCCCC-CHHHHHHHHHHHhhh
Confidence            111  1123444 5889999999 999999999998854

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.31  E-value=1.2e-11  Score=103.14  Aligned_cols=98  Identities=20%  Similarity=0.168  Sum_probs=69.8

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |+|++..          ....|+++||++|+|||+++..++.. ..|...+..    .++|+++|+||+|+....   .+
T Consensus        93 T~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~-~~i~~~l~~----~~~piilV~NK~Dl~~~~---~~  164 (472)
T PRK03003         93 TGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATD-EAVARVLRR----SGKPVILAANKVDDERGE---AD  164 (472)
T ss_pred             CCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECccCCccc---hh
Confidence            7898741          34568999999999999998766543 334444443    468999999999985321   22


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ....+....+ .+++|||++|. |++++|++|+..+.+
T Consensus       165 ~~~~~~~g~~-~~~~iSA~~g~-gi~eL~~~i~~~l~~  200 (472)
T PRK03003        165 AAALWSLGLG-EPHPVSALHGR-GVGDLLDAVLAALPE  200 (472)
T ss_pred             hHHHHhcCCC-CeEEEEcCCCC-CcHHHHHHHHhhccc
Confidence            2222222222 35799999999 999999999998865

>KOG0071|consensus

Probab=99.31  E-value=5.5e-12  Score=87.11  Aligned_cols=103  Identities=16%  Similarity=0.182  Sum_probs=84.6

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh--
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV--   78 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~--   78 (173)
                      .||++  .++++||.++.++|||.|..+.+..++....+..+.......++|++|.+||.|++...  +.+++..+.+  
T Consensus        69 GGqd~iRplWrhYy~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~--~pqei~d~leLe  146 (180)
T KOG0071|consen   69 GGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM--KPQEIQDKLELE  146 (180)
T ss_pred             cCchhhhHHHHhhccCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc--CHHHHHHHhccc
Confidence            57766  49999999999999999999998899888888888877766889999999999998543  4556555432  


Q ss_pred             ---hcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          79 ---KYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        79 ---~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                         ...+.+..+||.+|+ ++.+-|.||...+.
T Consensus       147 ~~r~~~W~vqp~~a~~gd-gL~eglswlsnn~~  178 (180)
T KOG0071|consen  147 RIRDRNWYVQPSCALSGD-GLKEGLSWLSNNLK  178 (180)
T ss_pred             cccCCccEeeccccccch-hHHHHHHHHHhhcc
Confidence               334667899999999 99999999987654

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.31  E-value=1.5e-11  Score=100.16  Aligned_cols=109  Identities=13%  Similarity=0.119  Sum_probs=82.1

Q ss_pred             hcccCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC--CeEEE
Q psy2792          13 MICWADGCIIVYSLI---DKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN--CTFHE   86 (173)
Q Consensus        13 y~~~ad~iilv~d~~---~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e   86 (173)
                      ++..+|++++|+|++   +.+.++++..|+.++..+.. ..+.|+|||+||+|+.....+ .+....+.+..+  ..++.
T Consensus       234 ~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~  312 (390)
T PRK12298        234 HLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYL  312 (390)
T ss_pred             HHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEE
Confidence            578899999999998   45678888888888877541 136899999999998653332 233344444444  36899


Q ss_pred             EcccCCcccHHHHHHHHHHHHhcCCCCCcccccccch
Q psy2792          87 VSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSV  123 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~  123 (173)
                      +||+++. ||++++++|.+.+.+.+..+++...+...
T Consensus       313 ISA~tg~-GIdeLl~~I~~~L~~~~~~~~~~~~td~~  348 (390)
T PRK12298        313 ISAASGL-GVKELCWDLMTFIEENPREEAEEAEAPEK  348 (390)
T ss_pred             EECCCCc-CHHHHHHHHHHHhhhCcccCCcccccCcc
Confidence            9999999 99999999999998888877766544433

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.29  E-value=2.6e-11  Score=88.35  Aligned_cols=101  Identities=12%  Similarity=0.087  Sum_probs=71.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~   77 (173)
                      |+|+.+.  .+..++.++|++++|+|.++..+... ..++..+..    .+.|+++|+||+|+.......  .++.....
T Consensus        69 tpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~-~~~~~~~~~----~~~~i~iv~nK~D~~~~~~~~~~~~~~~~~~  143 (189)
T cd00881          69 TPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQT-REHLRIARE----GGLPIIVAINKIDRVGEEDLEEVLREIKELL  143 (189)
T ss_pred             CCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHH-HHHHHHHHH----CCCCeEEEEECCCCcchhcHHHHHHHHHHHH
Confidence            7888763  77788999999999999987654432 234443333    468999999999986422211  12233333


Q ss_pred             hh--------------cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          78 VK--------------YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        78 ~~--------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ..              ....++++||++|. |++++|.+|...+.
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~-gi~~l~~~l~~~l~  187 (189)
T cd00881         144 GLIGFISTKEEGTRNGLLVPIVPGSALTGI-GVEELLEAIVEHLP  187 (189)
T ss_pred             ccccccchhhhhcccCCcceEEEEecccCc-CHHHHHHHHHhhCC
Confidence            22              34678999999999 99999999998763

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.28  E-value=2.7e-11  Score=85.55  Aligned_cols=91  Identities=16%  Similarity=0.092  Sum_probs=68.8

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |+|..+.          ....++.++|++++|+|++++.+......|..       ..+.|+++|+||+|+.+....   
T Consensus        56 tpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~-------~~~~~vi~v~nK~D~~~~~~~---  125 (157)
T cd04164          56 TAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILEL-------PADKPIIVVLNKSDLLPDSEL---  125 (157)
T ss_pred             CCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh-------hcCCCEEEEEEchhcCCcccc---
Confidence            6787652          23356789999999999998877766554432       156899999999998653332   


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                          .....+..++++||+++. |+++++.+|...+
T Consensus       126 ----~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~~~  156 (157)
T cd04164         126 ----LSLLAGKPIIAISAKTGE-GLDELKEALLELA  156 (157)
T ss_pred             ----ccccCCCceEEEECCCCC-CHHHHHHHHHHhh
Confidence                233445779999999999 9999999988754

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK00089 era GTPase Era; Reviewed

Probab=99.28  E-value=3.3e-11  Score=94.56  Aligned_cols=104  Identities=15%  Similarity=0.101  Sum_probs=72.4

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC-CeEEEEcc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN-CTFHEVSV   89 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sa   89 (173)
                      ..++.++|++++|+|+++.  +.....++.....   ..+.|+++|+||+|+.............+....+ ..++++||
T Consensus        79 ~~~~~~~D~il~vvd~~~~--~~~~~~~i~~~l~---~~~~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA  153 (292)
T PRK00089         79 WSSLKDVDLVLFVVDADEK--IGPGDEFILEKLK---KVKTPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISA  153 (292)
T ss_pred             HHHHhcCCEEEEEEeCCCC--CChhHHHHHHHHh---hcCCCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecC
Confidence            3467899999999999883  2222233322222   1358999999999996332222333444544444 56899999


Q ss_pred             cCCcccHHHHHHHHHHHHhcCCCCCcccccc
Q psy2792          90 ADNSPAIYQAFDHLLTESRGGPPSGIHKIRK  120 (173)
Q Consensus        90 k~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~  120 (173)
                      +++. |+++++++|.+.+.+.+..+++...+
T Consensus       154 ~~~~-gv~~L~~~L~~~l~~~~~~y~~~~~t  183 (292)
T PRK00089        154 LKGD-NVDELLDVIAKYLPEGPPYYPEDQIT  183 (292)
T ss_pred             CCCC-CHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            9999 99999999999999888777665433

>PRK04213 GTP-binding protein; Provisional

Probab=99.27  E-value=4.6e-12  Score=93.97  Aligned_cols=56  Identities=14%  Similarity=0.168  Sum_probs=43.0

Q ss_pred             CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC---------eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC---------TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~---------~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++|+++|+||+|+.+..   .+....++..+++         .++++||++|  ||+++|++|++.+.+
T Consensus       129 ~~~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g--gi~~l~~~l~~~~~~  193 (201)
T PRK04213        129 LGIPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG--GIEELKEAIRKRLHE  193 (201)
T ss_pred             cCCCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC--CHHHHHHHHHHhhcC
Confidence            469999999999986433   3344555555554         4799999999  899999999987654

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.26  E-value=3.9e-11  Score=98.87  Aligned_cols=92  Identities=12%  Similarity=0.025  Sum_probs=64.2

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH-HHhhh----cCCeEE
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR-STAVK----YNCTFH   85 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-~~~~~----~~~~~~   85 (173)
                      ..+++.||++|+|+|+++..+..+.. ++..+..    .++|+|+|+||+|+.+... ..++.. .+...    .+++++
T Consensus       249 ~~~~~~ad~~ilV~D~~~~~~~~~~~-~~~~~~~----~~~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi  322 (429)
T TIGR03594       249 LKAIERADVVLLVLDATEGITEQDLR-IAGLILE----AGKALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIV  322 (429)
T ss_pred             HHHHHhCCEEEEEEECCCCccHHHHH-HHHHHHH----cCCcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceE
Confidence            34789999999999999876665543 3333333    4589999999999962111 111111 11111    246799


Q ss_pred             EEcccCCcccHHHHHHHHHHHHhc
Q psy2792          86 EVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        86 e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++||++|. |++++|+++.+....
T Consensus       323 ~~SA~~g~-~v~~l~~~i~~~~~~  345 (429)
T TIGR03594       323 FISALTGQ-GVDKLLDAIDEVYEN  345 (429)
T ss_pred             EEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999 999999999886654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01855 YqeH YqeH

Probab=99.26  E-value=3.1e-11  Score=89.03  Aligned_cols=91  Identities=15%  Similarity=0.124  Sum_probs=64.4

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh-----hhcCC-
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA-----VKYNC-   82 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~-----~~~~~-   82 (173)
                      +...|++++|++|+|+|++++..     .|...+....  .+.|+++|+||+|+.... ...+....+.     ...+. 
T Consensus        27 ~l~~~~~~ad~il~VvD~~~~~~-----~~~~~l~~~~--~~~~~ilV~NK~Dl~~~~-~~~~~~~~~~~~~~~~~~~~~   98 (190)
T cd01855          27 LLSSISPKKALVVHVVDIFDFPG-----SLIPRLRLFG--GNNPVILVGNKIDLLPKD-KNLVRIKNWLRAKAAAGLGLK   98 (190)
T ss_pred             HHHhcccCCcEEEEEEECccCCC-----ccchhHHHhc--CCCcEEEEEEchhcCCCC-CCHHHHHHHHHHHHHhhcCCC
Confidence            56778999999999999988541     2333332222  468999999999986432 2333333333     22332 


Q ss_pred             --eEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          83 --TFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        83 --~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                        .++.+||++|. |+++++..|.+.+.
T Consensus        99 ~~~i~~vSA~~~~-gi~eL~~~l~~~l~  125 (190)
T cd01855          99 PKDVILISAKKGW-GVEELINAIKKLAK  125 (190)
T ss_pred             cccEEEEECCCCC-CHHHHHHHHHHHhh
Confidence              58999999999 99999999998774

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.25  E-value=4.5e-11  Score=102.12  Aligned_cols=100  Identities=14%  Similarity=0.156  Sum_probs=74.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||++++  .+..+++.+|++|+|+|+++.........|.... .    .++|+++|+||+|+....  ......++...
T Consensus        81 TPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~-~----~~lpiIvViNKiDl~~a~--~~~v~~ei~~~  153 (600)
T PRK05433         81 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLAL-E----NDLEIIPVLNKIDLPAAD--PERVKQEIEDV  153 (600)
T ss_pred             CCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHH-H----CCCCEEEEEECCCCCccc--HHHHHHHHHHH
Confidence            8999885  6778999999999999999865555555554332 2    468999999999986422  12223344444


Q ss_pred             cCC---eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNC---TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~---~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++   .++++||++|. ||++++++|+..+..
T Consensus       154 lg~~~~~vi~iSAktG~-GI~~Ll~~I~~~lp~  185 (600)
T PRK05433        154 IGIDASDAVLVSAKTGI-GIEEVLEAIVERIPP  185 (600)
T ss_pred             hCCCcceEEEEecCCCC-CHHHHHHHHHHhCcc
Confidence            454   38999999999 999999999988764

>PRK12289 GTPase RsgA; Reviewed

Probab=99.25  E-value=3.2e-11  Score=96.84  Aligned_cols=91  Identities=14%  Similarity=0.112  Sum_probs=69.0

Q ss_pred             cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV   87 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~   87 (173)
                      +.+.++.++|++++|||++++. ++..+..|+..+..    .++|+|||+||+||.+..++  +........+++.++.+
T Consensus        82 L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~----~~ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~i  155 (352)
T PRK12289         82 LDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAES----TGLEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFI  155 (352)
T ss_pred             eechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEE
Confidence            5666799999999999999876 55567788776633    56999999999999632211  11222334678889999


Q ss_pred             cccCCcccHHHHHHHHHHH
Q psy2792          88 SVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~~  106 (173)
                      ||+++. |+++++..|...
T Consensus       156 SA~tg~-GI~eL~~~L~~k  173 (352)
T PRK12289        156 SVETGI-GLEALLEQLRNK  173 (352)
T ss_pred             EcCCCC-CHHHHhhhhccc
Confidence            999999 999999888653

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.23  E-value=4.8e-11  Score=99.32  Aligned_cols=96  Identities=15%  Similarity=0.100  Sum_probs=70.5

Q ss_pred             hcccCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhC----------CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792          13 MICWADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRA----------VNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~----------~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      ++..||++|+|+|+++.    +.++++..|..++..+..          ..+.|+|||+||+|+.+...+. +.......
T Consensus       233 hieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~  311 (500)
T PRK12296        233 HIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELE  311 (500)
T ss_pred             HHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHH
Confidence            46779999999999863    356666677777765541          2468999999999997543321 22222334


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      ..++.+|+|||+++. |+++++.+|.+.+...
T Consensus       312 ~~g~~Vf~ISA~tge-GLdEL~~~L~ell~~~  342 (500)
T PRK12296        312 ARGWPVFEVSAASRE-GLRELSFALAELVEEA  342 (500)
T ss_pred             HcCCeEEEEECCCCC-CHHHHHHHHHHHHHhh
Confidence            457889999999999 9999999999887653

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.22  E-value=4.9e-11  Score=101.82  Aligned_cols=97  Identities=12%  Similarity=0.063  Sum_probs=73.2

Q ss_pred             CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.        +.+.|+.  ++|++++|+|.++.+   ....+..++.+    .++|+++|+||+|+.+.+.+. .
T Consensus        48 tPG~~~~~~~s~~e~v~~~~l~~~~aDvvI~VvDat~le---r~l~l~~ql~~----~~~PiIIVlNK~Dl~~~~~i~-~  119 (591)
T TIGR00437        48 LPGIYSLTTFSLEEEVARDYLLNEKPDLVVNVVDASNLE---RNLYLTLQLLE----LGIPMILALNLVDEAEKKGIR-I  119 (591)
T ss_pred             CCCccccCccchHHHHHHHHHhhcCCCEEEEEecCCcch---hhHHHHHHHHh----cCCCEEEEEehhHHHHhCCCh-h
Confidence            7898762        2455654  799999999998743   22333334433    468999999999986555554 3


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      +.+.+++..+++++++||++|. |++++|+++.+..
T Consensus       120 d~~~L~~~lg~pvv~tSA~tg~-Gi~eL~~~i~~~~  154 (591)
T TIGR00437       120 DEEKLEERLGVPVVPTSATEGR-GIERLKDAIRKAI  154 (591)
T ss_pred             hHHHHHHHcCCCEEEEECCCCC-CHHHHHHHHHHHh
Confidence            4677888889999999999999 9999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd00880 Era_like Era (E

Probab=99.21  E-value=1.1e-10  Score=81.89  Aligned_cols=99  Identities=20%  Similarity=0.150  Sum_probs=70.3

Q ss_pred             CCCCCCc---------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH-
Q psy2792           2 TIGLTEG---------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES-   71 (173)
Q Consensus         2 TaG~e~~---------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~-   71 (173)
                      |+|+.+.         ....++.++|++++|+|.++..+..... |......    .+.|+++|+||+|+.....+... 
T Consensus        52 t~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~-~~~~~~~----~~~~~ivv~nK~D~~~~~~~~~~~  126 (163)
T cd00880          52 TPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEK-LLELLRE----RGKPVLLVLNKIDLLPEEEEEELL  126 (163)
T ss_pred             CCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHH-HHHHHHh----cCCeEEEEEEccccCChhhHHHHH
Confidence            6777662         3334789999999999999987665544 4444333    56899999999998654322211 


Q ss_pred             --HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          72 --LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        72 --~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                        .........+..++++||+++. |++++++++.+.
T Consensus       127 ~~~~~~~~~~~~~~~~~~sa~~~~-~v~~l~~~l~~~  162 (163)
T cd00880         127 ELRLLILLLLLGLPVIAVSALTGE-GIDELREALIEA  162 (163)
T ss_pred             HHHHhhcccccCCceEEEeeeccC-CHHHHHHHHHhh
Confidence              1122333345789999999999 999999999864

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0072|consensus

Probab=99.20  E-value=5.2e-11  Score=82.66  Aligned_cols=101  Identities=17%  Similarity=0.160  Sum_probs=71.6

Q ss_pred             ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc---CCHHHHHHHhhhcCCeE
Q psy2792           8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ---VDESLGRSTAVKYNCTF   84 (173)
Q Consensus         8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---v~~~~~~~~~~~~~~~~   84 (173)
                      ..++.||.+.|++|+|+|.+|.+........+..+.+...-.+..++|++||.|....-.   +....+....+..-+..
T Consensus        77 PyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~I  156 (182)
T KOG0072|consen   77 PYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALTRSEVLKMLGLQKLKDRIWQI  156 (182)
T ss_pred             HHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhhHHHHHHHhChHHHhhheeEE
Confidence            488999999999999999999876655544443343333245688999999999863211   11111112223334779


Q ss_pred             EEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          85 HEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        85 ~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      |++||.+|+ |++++++||.+.+.+
T Consensus       157 v~tSA~kg~-Gld~~~DWL~~~l~~  180 (182)
T KOG0072|consen  157 VKTSAVKGE-GLDPAMDWLQRPLKS  180 (182)
T ss_pred             Eeecccccc-CCcHHHHHHHHHHhc
Confidence            999999999 999999999988765

>cd01854 YjeQ_engC YjeQ/EngC

Probab=99.19  E-value=9.1e-11  Score=92.03  Aligned_cols=86  Identities=17%  Similarity=0.111  Sum_probs=68.1

Q ss_pred             hcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccC
Q psy2792          13 MICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVAD   91 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~   91 (173)
                      .+.++|++++|+|++++. ++..+..|+..+..    .++|+++|+||+||.+...  ......+....++.++.+||++
T Consensus        75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~----~~ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~  148 (287)
T cd01854          75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEA----AGIEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKT  148 (287)
T ss_pred             EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHH----cCCCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCC
Confidence            488999999999999988 88888899887765    4589999999999964311  1122333445688899999999


Q ss_pred             CcccHHHHHHHHHH
Q psy2792          92 NSPAIYQAFDHLLT  105 (173)
Q Consensus        92 g~~~v~~lf~~l~~  105 (173)
                      +. |+++++..|..
T Consensus       149 g~-gi~~L~~~L~~  161 (287)
T cd01854         149 GE-GLDELREYLKG  161 (287)
T ss_pred             Cc-cHHHHHhhhcc
Confidence            99 99999988764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>cd01895 EngA2 EngA2 subfamily

Probab=99.18  E-value=3.4e-10  Score=81.04  Aligned_cols=89  Identities=13%  Similarity=0.080  Sum_probs=61.8

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH-HHHHhhhc----CCeEEE
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL-GRSTAVKY----NCTFHE   86 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~-~~~~~~~~----~~~~~e   86 (173)
                      .++.++|++|+|+|++++.++... .++..+..    .+.|+++|+||+|+.+......+. ...+....    ...+++
T Consensus        80 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (174)
T cd01895          80 KAIERADVVLLVIDATEGITEQDL-RIAGLILE----EGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVF  154 (174)
T ss_pred             HHHhhcCeEEEEEeCCCCcchhHH-HHHHHHHh----cCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEE
Confidence            357899999999999998776543 23333332    358999999999987543222222 12222322    367999


Q ss_pred             EcccCCcccHHHHHHHHHHH
Q psy2792          87 VSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~~~  106 (173)
                      +||+++. |++++|+.+.+.
T Consensus       155 ~Sa~~~~-~i~~~~~~l~~~  173 (174)
T cd01895         155 ISALTGQ-GVDKLFDAIDEV  173 (174)
T ss_pred             EeccCCC-CHHHHHHHHHHh
Confidence            9999999 999999998753

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>KOG1673|consensus

Probab=99.17  E-value=1.3e-10  Score=81.67  Aligned_cols=109  Identities=15%  Similarity=0.101  Sum_probs=85.9

Q ss_pred             CCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--c---CCHHHHHH
Q psy2792           3 IGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--Q---VDESLGRS   75 (173)
Q Consensus         3 aG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~---v~~~~~~~   75 (173)
                      .|++++  +.+....++-+++|+||++.+.+++.+..|+.+.+... ...+| |+||+|.|+--.-  +   --..++..
T Consensus        77 gG~~~~~n~lPiac~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~N-ktAiP-ilvGTKyD~fi~lp~e~Q~~I~~qar~  154 (205)
T KOG1673|consen   77 GGQREFINMLPIACKDSVAILFMFDLTRRSTLNSIKEWYRQARGLN-KTAIP-ILVGTKYDLFIDLPPELQETISRQARK  154 (205)
T ss_pred             CCcHhhhccCceeecCcEEEEEEEecCchHHHHHHHHHHHHHhccC-Cccce-EEeccchHhhhcCCHHHHHHHHHHHHH
Confidence            577774  77788899999999999999999999999999988765 24455 5789999963111  0   01234566


Q ss_pred             HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCC
Q psy2792          76 TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSG  114 (173)
Q Consensus        76 ~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~  114 (173)
                      +|+-.+...|.||+.... ||..+|.-+...+..-+..-
T Consensus       155 YAk~mnAsL~F~Sts~sI-Nv~KIFK~vlAklFnL~~ti  192 (205)
T KOG1673|consen  155 YAKVMNASLFFCSTSHSI-NVQKIFKIVLAKLFNLPWTI  192 (205)
T ss_pred             HHHHhCCcEEEeeccccc-cHHHHHHHHHHHHhCCceec
Confidence            788889999999999999 99999999998888755544

>PRK00098 GTPase RsgA; Reviewed

Probab=99.16  E-value=1.2e-10  Score=91.77  Aligned_cols=86  Identities=13%  Similarity=0.070  Sum_probs=65.1

Q ss_pred             cccCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792          14 ICWADGCIIVYSLIDKESFDY-AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN   92 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g   92 (173)
                      ..++|++++|+|+++++++.. +..|+..+..    .++|+++|+||+||.+... ............++.++++||+++
T Consensus        78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~----~~ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g  152 (298)
T PRK00098         78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA----NGIKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEG  152 (298)
T ss_pred             eecCCEEEEEEECCCCCCCHHHHHHHHHHHHH----CCCCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCC
Confidence            589999999999998876544 4678777654    4689999999999953221 112233445567889999999999


Q ss_pred             cccHHHHHHHHHH
Q psy2792          93 SPAIYQAFDHLLT  105 (173)
Q Consensus        93 ~~~v~~lf~~l~~  105 (173)
                      . |+++++..+..
T Consensus       153 ~-gi~~L~~~l~g  164 (298)
T PRK00098        153 E-GLDELKPLLAG  164 (298)
T ss_pred             c-cHHHHHhhccC
Confidence            9 99999987743

>cd01859 MJ1464 MJ1464

Probab=99.15  E-value=1.3e-10  Score=83.09  Aligned_cols=93  Identities=13%  Similarity=-0.020  Sum_probs=64.0

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      +.+++++++|++|+|+|++++....+ ..+...+..    .+.|+++|+||+|+.+....  .....+....+..++.+|
T Consensus         5 ~~~~i~~~aD~vl~V~D~~~~~~~~~-~~l~~~~~~----~~~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iS   77 (156)
T cd01859           5 LVRRIIKESDVVLEVLDARDPELTRS-RKLERYVLE----LGKKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVS   77 (156)
T ss_pred             HHHHHHhhCCEEEEEeeCCCCcccCC-HHHHHHHHh----CCCcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEE
Confidence            56778899999999999987643222 122222221    35899999999998532111  111123334567789999


Q ss_pred             ccCCcccHHHHHHHHHHHHhc
Q psy2792          89 VADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~i~~  109 (173)
                      |+++. |++++++.+.+.+..
T Consensus        78 a~~~~-gi~~L~~~l~~~~~~   97 (156)
T cd01859          78 AKERL-GTKILRRTIKELAKI   97 (156)
T ss_pred             ccccc-cHHHHHHHHHHHHhh
Confidence            99999 999999999887764

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>PRK12288 GTPase RsgA; Reviewed

Probab=99.14  E-value=2.8e-10  Score=91.35  Aligned_cols=88  Identities=14%  Similarity=0.035  Sum_probs=67.1

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHhhhcCCeEEEEcccCC
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTAVKYNCTFHEVSVADN   92 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~~~~~~~~e~Sak~g   92 (173)
                      ..|+|.+++||+++...+|..+..|+..+..    .++|++||+||+||....+. ............++.++++||+++
T Consensus       118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~----~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg  193 (347)
T PRK12288        118 AANIDQIVIVSAVLPELSLNIIDRYLVACET----LGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTG  193 (347)
T ss_pred             EEEccEEEEEEeCCCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence            3569999999999887899999999876543    46899999999999643210 011222334456889999999999


Q ss_pred             cccHHHHHHHHHHH
Q psy2792          93 SPAIYQAFDHLLTE  106 (173)
Q Consensus        93 ~~~v~~lf~~l~~~  106 (173)
                      . |++++++.|...
T Consensus       194 ~-GideL~~~L~~k  206 (347)
T PRK12288        194 E-GLEELEAALTGR  206 (347)
T ss_pred             c-CHHHHHHHHhhC
Confidence            9 999999988653

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.13  E-value=6.6e-10  Score=80.15  Aligned_cols=98  Identities=20%  Similarity=0.167  Sum_probs=76.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+||+++  ++..+.++++++|++.|.+.+..| +....++.+...   ..+|++|+.||.||.+..  +.+...++...
T Consensus        75 tPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~-~a~~ii~f~~~~---~~ip~vVa~NK~DL~~a~--ppe~i~e~l~~  148 (187)
T COG2229          75 TPGQERFKFMWEILSRGAVGAIVLVDSSRPITF-HAEEIIDFLTSR---NPIPVVVAINKQDLFDAL--PPEKIREALKL  148 (187)
T ss_pred             CCCcHHHHHHHHHHhCCcceEEEEEecCCCcch-HHHHHHHHHhhc---cCCCEEEEeeccccCCCC--CHHHHHHHHHh
Confidence            8999994  999999999999999999999888 444444444432   239999999999997543  45565555444


Q ss_pred             c--CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 Y--NCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~--~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .  ..+.++++|.+++ ++.+.++.+...
T Consensus       149 ~~~~~~vi~~~a~e~~-~~~~~L~~ll~~  176 (187)
T COG2229         149 ELLSVPVIEIDATEGE-GARDQLDVLLLK  176 (187)
T ss_pred             ccCCCceeeeecccch-hHHHHHHHHHhh
Confidence            3  6889999999999 999888877654

>cd04163 Era Era subfamily

Probab=99.13  E-value=4.1e-10  Score=79.85  Aligned_cols=89  Identities=15%  Similarity=0.129  Sum_probs=62.2

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHH-HHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC-CeEEEEc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN-CTFHEVS   88 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~S   88 (173)
                      ..++..+|++++|+|++++  +.....| ...+..    .+.|+++|+||+|+........+....+....+ ..++++|
T Consensus        77 ~~~~~~~d~i~~v~d~~~~--~~~~~~~~~~~~~~----~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s  150 (168)
T cd04163          77 WSALKDVDLVLFVVDASEP--IGEGDEFILELLKK----SKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPIS  150 (168)
T ss_pred             HHHHHhCCEEEEEEECCCc--cCchHHHHHHHHHH----hCCCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEE
Confidence            4568899999999999987  2222333 333433    258999999999986322222333344444443 6789999


Q ss_pred             ccCCcccHHHHHHHHHHH
Q psy2792          89 VADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~  106 (173)
                      ++++. |++++|+.|.+.
T Consensus       151 ~~~~~-~~~~l~~~l~~~  167 (168)
T cd04163         151 ALKGE-NVDELLEEIVKY  167 (168)
T ss_pred             eccCC-ChHHHHHHHHhh
Confidence            99999 999999999764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01889 SelB_euk SelB subfamily

Probab=99.12  E-value=2.7e-10  Score=84.11  Aligned_cols=101  Identities=12%  Similarity=-0.026  Sum_probs=64.7

Q ss_pred             CCCCCCccHhhh---cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHHHH
Q psy2792           2 TIGLTEGTLTAM---ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGRST   76 (173)
Q Consensus         2 TaG~e~~~~~~y---~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~   76 (173)
                      |||+.. +...|   ...+|++++|+|+++.........|.  +...   .++|+++|+||+|+......  ..++....
T Consensus        75 tpG~~~-~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~--~~~~---~~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~  148 (192)
T cd01889          75 CPGHAS-LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLV--IGEI---LCKKLIVVLNKIDLIPEEERERKIEKMKKK  148 (192)
T ss_pred             CCCcHH-HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHH--HHHH---cCCCEEEEEECcccCCHHHHHHHHHHHHHH
Confidence            677743 33334   35679999999998754333333332  1121   24799999999998632211  11222221


Q ss_pred             -hh------hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 -AV------KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 -~~------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                       ..      ..+++++++||++|. |++++++.|..++..
T Consensus       149 l~~~~~~~~~~~~~vi~iSa~~g~-gi~~L~~~l~~~~~~  187 (192)
T cd01889         149 LQKTLEKTRFKNSPIIPVSAKPGG-GEAELGKDLNNLIVL  187 (192)
T ss_pred             HHHHHHhcCcCCCCEEEEeccCCC-CHHHHHHHHHhcccc
Confidence             11      235789999999999 999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.12  E-value=6.2e-10  Score=94.88  Aligned_cols=92  Identities=18%  Similarity=0.211  Sum_probs=66.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |||++++  ++..++..+|++|+|||+++   +++++.+    ..+.    ..++|+++++||+|+.+.   ..++....
T Consensus       142 TPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i----~~~~----~~~vPiIVviNKiDl~~~---~~e~v~~~  210 (587)
T TIGR00487       142 TPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAI----SHAK----AANVPIIVAINKIDKPEA---NPDRVKQE  210 (587)
T ss_pred             CCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHH----HHHH----HcCCCEEEEEECcccccC---CHHHHHHH
Confidence            8999885  77788999999999999987   3444332    1122    246899999999998642   23333333


Q ss_pred             hhh-------cC--CeEEEEcccCCcccHHHHHHHHHH
Q psy2792          77 AVK-------YN--CTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        77 ~~~-------~~--~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      +..       ++  ..++++||++|. |++++|++|..
T Consensus       211 L~~~g~~~~~~~~~~~~v~iSAktGe-GI~eLl~~I~~  247 (587)
T TIGR00487       211 LSEYGLVPEDWGGDTIFVPVSALTGD-GIDELLDMILL  247 (587)
T ss_pred             HHHhhhhHHhcCCCceEEEEECCCCC-ChHHHHHhhhh
Confidence            222       22  469999999999 99999999874

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.11  E-value=1.5e-10  Score=78.66  Aligned_cols=58  Identities=34%  Similarity=0.513  Sum_probs=44.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHH---HHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVS---TLQNLQRHRAVNNVPVMLLANKLD   61 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~---~~~~i~~~~~~~~~piilv~NK~D   61 (173)
                      ++|++..  ....++.++|++|+|||+++++||+.+..   |+..+....  .++|++|||||.|
T Consensus        57 ~~g~~~~~~~~~~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~--~~~piilv~nK~D  119 (119)
T PF08477_consen   57 FGGQEEFYSQHQFFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRD--KNIPIILVGNKSD  119 (119)
T ss_dssp             ESSSHCHHCTSHHHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHS--SCSEEEEEEE-TC
T ss_pred             cCccceecccccchhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccC--CCCCEEEEEeccC
Confidence            3556552  34556999999999999999999998744   566665544  5699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.11  E-value=2.7e-10  Score=97.13  Aligned_cols=99  Identities=14%  Similarity=0.103  Sum_probs=71.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC--CHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV--DESLG   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v--~~~~~   73 (173)
                      |||++++  ....++.++|++|+|+|+++   +++++++. +   +..    .++| +++|+||+|+.+...+  ..++.
T Consensus        57 tPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~-i---l~~----lgi~~iIVVlNK~Dlv~~~~~~~~~~ei  128 (581)
T TIGR00475        57 VPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLA-V---LDL----LGIPHTIVVITKADRVNEEEIKRTEMFM  128 (581)
T ss_pred             CCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHH-H---HHH----cCCCeEEEEEECCCCCCHHHHHHHHHHH
Confidence            6888775  44567889999999999998   55665543 1   222    3477 9999999999753322  12334


Q ss_pred             HHHhhhc----CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          74 RSTAVKY----NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        74 ~~~~~~~----~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..+....    +++++++||++|. |+++++..|...+..
T Consensus       129 ~~~l~~~~~~~~~~ii~vSA~tG~-GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       129 KQILNSYIFLKNAKIFKTSAKTGQ-GIGELKKELKNLLES  167 (581)
T ss_pred             HHHHHHhCCCCCCcEEEEeCCCCC-CchhHHHHHHHHHHh
Confidence            4444443    4679999999999 999999998876654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.10  E-value=6e-10  Score=94.89  Aligned_cols=95  Identities=15%  Similarity=0.061  Sum_probs=66.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--------   68 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--------   68 (173)
                      |||++.+  ++..+++.+|++|+|||+++   +++++.+..+    ..    .++|+++|+||+|+......        
T Consensus        76 TpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l----~~----~~vpiIVv~NK~Dl~~~~~~~~~~~f~e  147 (590)
T TIGR00491        76 TPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNIL----RM----YKTPFVVAANKIDRIPGWRSHEGRPFME  147 (590)
T ss_pred             CCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHH----HH----cCCCEEEEEECCCccchhhhccCchHHH
Confidence            8999874  78889999999999999997   5666654322    22    36899999999998632100        


Q ss_pred             ----CHHH------------HHHHhh------------hc--CCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          69 ----DESL------------GRSTAV------------KY--NCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        69 ----~~~~------------~~~~~~------------~~--~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                          ....            ...+++            .+  .+.++.+||++|+ |+++++.+|..
T Consensus       148 ~sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe-GideLl~~l~~  213 (590)
T TIGR00491       148 SFSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE-GIPELLTMLAG  213 (590)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC-ChhHHHHHHHH
Confidence                0000            001111            11  2578999999999 99999998864

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.09  E-value=5.5e-10  Score=96.91  Aligned_cols=94  Identities=17%  Similarity=0.199  Sum_probs=68.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-   75 (173)
                      |||++.+  ++..++..+|++|+|+|+++   +++++.+..    +.    ..++|+|||+||+|+....   .+.... 
T Consensus       302 TPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~----~k----~~~iPiIVViNKiDl~~~~---~e~v~~e  370 (742)
T CHL00189        302 TPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINY----IQ----AANVPIIVAINKIDKANAN---TERIKQQ  370 (742)
T ss_pred             CCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHH----HH----hcCceEEEEEECCCccccC---HHHHHHH
Confidence            8999874  77789999999999999987   345544322    22    2468999999999986421   222211 


Q ss_pred             H------hhhcC--CeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          76 T------AVKYN--CTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        76 ~------~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      +      ...++  ++++++||++|. |++++|++|....
T Consensus       371 L~~~~ll~e~~g~~vpvv~VSAktG~-GIdeLle~I~~l~  409 (742)
T CHL00189        371 LAKYNLIPEKWGGDTPMIPISASQGT-NIDKLLETILLLA  409 (742)
T ss_pred             HHHhccchHhhCCCceEEEEECCCCC-CHHHHHHhhhhhh
Confidence            1      22233  679999999999 9999999998653

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.07  E-value=6.5e-10  Score=89.80  Aligned_cols=89  Identities=24%  Similarity=0.244  Sum_probs=67.5

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCC--
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNC--   82 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~--   82 (173)
                      +...|+..++++++|+|+.|..     ..|..++.+..  .+.|+++|+||+||.. +.+..+....    +++..++  
T Consensus        56 ~l~~~~~~~~~Il~VvD~~d~~-----~s~~~~l~~~~--~~~piilV~NK~DLl~-k~~~~~~~~~~l~~~~k~~g~~~  127 (360)
T TIGR03597        56 LLNSLGDSNALIVYVVDIFDFE-----GSLIPELKRFV--GGNPVLLVGNKIDLLP-KSVNLSKIKEWMKKRAKELGLKP  127 (360)
T ss_pred             HHhhcccCCcEEEEEEECcCCC-----CCccHHHHHHh--CCCCEEEEEEchhhCC-CCCCHHHHHHHHHHHHHHcCCCc
Confidence            6677889999999999997653     34666776664  4679999999999864 3333444433    3556666  


Q ss_pred             -eEEEEcccCCcccHHHHHHHHHHH
Q psy2792          83 -TFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        83 -~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                       .++++||++|. |++++|..|.+.
T Consensus       128 ~~i~~vSAk~g~-gv~eL~~~l~~~  151 (360)
T TIGR03597       128 VDIILVSAKKGN-GIDELLDKIKKA  151 (360)
T ss_pred             CcEEEecCCCCC-CHHHHHHHHHHH
Confidence             48999999999 999999998754

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.07  E-value=1.1e-09  Score=90.39  Aligned_cols=93  Identities=22%  Similarity=0.135  Sum_probs=65.4

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHH--HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFD--YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD   69 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~   69 (173)
                      |+|+++.          ....++.++|++|+|+|.++..+..  .+..|+.   .    .+.|+++|+||+|+.+.    
T Consensus        56 T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~---~----~~~piilv~NK~D~~~~----  124 (435)
T PRK00093         56 TGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILR---K----SNKPVILVVNKVDGPDE----  124 (435)
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHH---H----cCCcEEEEEECccCccc----
Confidence            8898761          2456789999999999998753332  2233433   2    25899999999997531    


Q ss_pred             HHHHHHHhhhcCCe-EEEEcccCCcccHHHHHHHHHHHH
Q psy2792          70 ESLGRSTAVKYNCT-FHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        70 ~~~~~~~~~~~~~~-~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .....++ ..+++. ++++||++|. |++++|+.++...
T Consensus       125 ~~~~~~~-~~lg~~~~~~iSa~~g~-gv~~l~~~I~~~~  161 (435)
T PRK00093        125 EADAYEF-YSLGLGEPYPISAEHGR-GIGDLLDAILEEL  161 (435)
T ss_pred             hhhHHHH-HhcCCCCCEEEEeeCCC-CHHHHHHHHHhhC
Confidence            1222222 345654 8999999999 9999999998743

>KOG1707|consensus

Probab=99.06  E-value=2e-10  Score=95.27  Aligned_cols=100  Identities=18%  Similarity=0.153  Sum_probs=77.7

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCCHHH-HHHHhhhcC-Ce-
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVDESL-GRSTAVKYN-CT-   83 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~-~~~~~~~~~-~~-   83 (173)
                      ....-++.||++.+||+++++++++.+. .|+..+++..+. .++||||||||+|+......+.+. ..-+..++. ++ 
T Consensus        72 ~l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEt  151 (625)
T KOG1707|consen   72 CLRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIET  151 (625)
T ss_pred             HHHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHH
Confidence            3466789999999999999999999995 599999987643 579999999999987544433333 333333332 33 


Q ss_pred             EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          84 FHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        84 ~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++|||++.. ++.++|....+.++.
T Consensus       152 ciecSA~~~~-n~~e~fYyaqKaVih  176 (625)
T KOG1707|consen  152 CIECSALTLA-NVSELFYYAQKAVIH  176 (625)
T ss_pred             HHhhhhhhhh-hhHhhhhhhhheeec
Confidence            8999999999 999999988777665

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.06  E-value=1.1e-09  Score=95.78  Aligned_cols=93  Identities=16%  Similarity=0.173  Sum_probs=67.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR--   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~--   74 (173)
                      |+|++++  ++..++..+|++|||||+++   +++++.+.    .+.    ..++|+|||+||+|+.+..   .+...  
T Consensus       344 TPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~----~a~----~~~vPiIVviNKiDl~~a~---~e~V~~e  412 (787)
T PRK05306        344 TPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAIN----HAK----AAGVPIIVAINKIDKPGAN---PDRVKQE  412 (787)
T ss_pred             CCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHH----HHH----hcCCcEEEEEECccccccC---HHHHHHH
Confidence            8999885  77778999999999999987   44544321    122    2469999999999996421   11111  


Q ss_pred             -----HHhhhcC--CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          75 -----STAVKYN--CTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        75 -----~~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                           .++..++  +.++++||++|. ||+++|++|...
T Consensus       413 L~~~~~~~e~~g~~vp~vpvSAktG~-GI~eLle~I~~~  450 (787)
T PRK05306        413 LSEYGLVPEEWGGDTIFVPVSAKTGE-GIDELLEAILLQ  450 (787)
T ss_pred             HHHhcccHHHhCCCceEEEEeCCCCC-CchHHHHhhhhh
Confidence                 1223333  679999999999 999999998753

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.06  E-value=8.5e-10  Score=96.30  Aligned_cols=90  Identities=10%  Similarity=-0.039  Sum_probs=64.1

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-Hhhh----cCCeEEE
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-TAVK----YNCTFHE   86 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~~~~----~~~~~~e   86 (173)
                      .+++.+|++|+|+|+++..++.++. ++..+..    .++|++||+||+|+.+...  .+.... +...    ...+.+.
T Consensus       528 ~~i~~advvilViDat~~~s~~~~~-i~~~~~~----~~~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~  600 (712)
T PRK09518        528 AAIERSELALFLFDASQPISEQDLK-VMSMAVD----AGRALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVN  600 (712)
T ss_pred             HHhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEE
Confidence            4578999999999999987777664 3344433    4589999999999964221  111111 1111    1245689


Q ss_pred             EcccCCcccHHHHHHHHHHHHhc
Q psy2792          87 VSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +||++|. ||+++|+.+.+.+..
T Consensus       601 iSAktg~-gv~~L~~~i~~~~~~  622 (712)
T PRK09518        601 LSAKTGW-HTNRLAPAMQEALES  622 (712)
T ss_pred             EECCCCC-CHHHHHHHHHHHHHH
Confidence            9999999 999999999987765

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.05  E-value=1.3e-09  Score=95.21  Aligned_cols=97  Identities=16%  Similarity=0.133  Sum_probs=67.0

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~   70 (173)
                      |+|++..          ....++..||++|+|+|.++.  +... ..|...+..    .++|+|+|+||+|+....   .
T Consensus       330 T~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~--~~~~d~~i~~~Lr~----~~~pvIlV~NK~D~~~~~---~  400 (712)
T PRK09518        330 TGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVG--LTSTDERIVRMLRR----AGKPVVLAVNKIDDQASE---Y  400 (712)
T ss_pred             CCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCC--CCHHHHHHHHHHHh----cCCCEEEEEECcccccch---h
Confidence            8898741          334578999999999999864  2222 235555543    468999999999985421   1


Q ss_pred             HHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        71 ~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .....+....+ ..|++||++|. ||+++|++|+..+..
T Consensus       401 ~~~~~~~lg~~-~~~~iSA~~g~-GI~eLl~~i~~~l~~  437 (712)
T PRK09518        401 DAAEFWKLGLG-EPYPISAMHGR-GVGDLLDEALDSLKV  437 (712)
T ss_pred             hHHHHHHcCCC-CeEEEECCCCC-CchHHHHHHHHhccc
Confidence            11222222222 36799999999 999999999988755

>COG1159 Era GTPase [General function prediction only]

Probab=99.04  E-value=1e-09  Score=84.86  Aligned_cols=121  Identities=14%  Similarity=0.086  Sum_probs=83.5

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHH-HHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTL-QNLQRHRAVNNVPVMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~   70 (173)
                      |+|.-+.          ....-+.++|+++||.|.++.  +.....|+ +.+..    .+.|++++.||+|..+....-.
T Consensus        61 TPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~--~~~~d~~il~~lk~----~~~pvil~iNKID~~~~~~~l~  134 (298)
T COG1159          61 TPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEG--WGPGDEFILEQLKK----TKTPVILVVNKIDKVKPKTVLL  134 (298)
T ss_pred             CCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEecccc--CCccHHHHHHHHhh----cCCCeEEEEEccccCCcHHHHH
Confidence            7777661          233458899999999999874  22234444 33333    3589999999999865443112


Q ss_pred             HHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcccccccchhccccc
Q psy2792          71 SLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGT  129 (173)
Q Consensus        71 ~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~~~~~~~~~~~~  129 (173)
                      .....+..... ...+++||+.|. |++.+.+.+...+.++++.+++..-+..+.+...+
T Consensus       135 ~~~~~~~~~~~f~~ivpiSA~~g~-n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~a  193 (298)
T COG1159         135 KLIAFLKKLLPFKEIVPISALKGD-NVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAA  193 (298)
T ss_pred             HHHHHHHhhCCcceEEEeeccccC-CHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHH
Confidence            22222223222 458999999999 99999999999999999999987766555544433

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.02  E-value=1.4e-09  Score=80.02  Aligned_cols=101  Identities=19%  Similarity=0.190  Sum_probs=65.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~~~~   77 (173)
                      |||..++  .....+..+|++|+|+|..+.-... ....+..+..    .++|+|+|.||+|+...+.  +..+....+.
T Consensus        77 tPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~-~~~~l~~~~~----~~~p~ivvlNK~D~~~~~~~~~~~~~~~~l~  151 (188)
T PF00009_consen   77 TPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQ-TEEHLKILRE----LGIPIIVVLNKMDLIEKELEEIIEEIKEKLL  151 (188)
T ss_dssp             ESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHH-HHHHHHHHHH----TT-SEEEEEETCTSSHHHHHHHHHHHHHHHH
T ss_pred             cccccceeecccceecccccceeeeecccccccc-cccccccccc----cccceEEeeeeccchhhhHHHHHHHHHHHhc
Confidence            6788764  3445588999999999998653322 2233333444    4589999999999862111  0011111232


Q ss_pred             hhc------CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          78 VKY------NCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        78 ~~~------~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +..      .++++.+||++|. |+++|++.|.+.++
T Consensus       152 ~~~~~~~~~~~~vi~~Sa~~g~-gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  152 KEYGENGEEIVPVIPISALTGD-GIDELLEALVELLP  187 (188)
T ss_dssp             HHTTSTTTSTEEEEEEBTTTTB-THHHHHHHHHHHS-
T ss_pred             cccccCccccceEEEEecCCCC-CHHHHHHHHHHhCc
Confidence            222      2569999999999 99999999988764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.01  E-value=1.8e-09  Score=89.18  Aligned_cols=91  Identities=11%  Similarity=0.062  Sum_probs=62.9

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh----hhcCCeEEEE
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA----VKYNCTFHEV   87 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~~~~~e~   87 (173)
                      .+++.+|++|+|+|+++..+..+.. +...+.+    .+.|+++|+||+|+.+.... .+....+.    ....++++++
T Consensus       251 ~~~~~ad~~ilViD~~~~~~~~~~~-i~~~~~~----~~~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~  324 (435)
T PRK00093        251 KAIERADVVLLVIDATEGITEQDLR-IAGLALE----AGRALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFI  324 (435)
T ss_pred             HHHHHCCEEEEEEeCCCCCCHHHHH-HHHHHHH----cCCcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEE
Confidence            4788999999999999876665543 3333333    35899999999998632211 11111111    1224679999


Q ss_pred             cccCCcccHHHHHHHHHHHHhc
Q psy2792          88 SVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ||++|. ||+++|+.+......
T Consensus       325 SA~~~~-gv~~l~~~i~~~~~~  345 (435)
T PRK00093        325 SALTGQ-GVDKLLEAIDEAYEN  345 (435)
T ss_pred             eCCCCC-CHHHHHHHHHHHHHH
Confidence            999999 999999998875543

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.00  E-value=2.8e-09  Score=87.85  Aligned_cols=90  Identities=19%  Similarity=0.116  Sum_probs=63.6

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEV   87 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~   87 (173)
                      ....+++++|++|+|+|..+..+... ..+...+.+    .+.|+++|+||+|+.+....    ..+ +..+++ .++++
T Consensus        71 ~~~~~~~~ad~vl~vvD~~~~~~~~d-~~i~~~l~~----~~~piilVvNK~D~~~~~~~----~~~-~~~lg~~~~~~v  140 (429)
T TIGR03594        71 QAEIAIEEADVILFVVDGREGLTPED-EEIAKWLRK----SGKPVILVANKIDGKKEDAV----AAE-FYSLGFGEPIPI  140 (429)
T ss_pred             HHHHHHhhCCEEEEEEeCCCCCCHHH-HHHHHHHHH----hCCCEEEEEECccCCccccc----HHH-HHhcCCCCeEEE
Confidence            45567899999999999987533322 112222333    35899999999998653321    122 234565 69999


Q ss_pred             cccCCcccHHHHHHHHHHHHhc
Q psy2792          88 SVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ||++|. |++++++++...+.+
T Consensus       141 Sa~~g~-gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       141 SAEHGR-GIGDLLDAILELLPE  161 (429)
T ss_pred             eCCcCC-ChHHHHHHHHHhcCc
Confidence            999999 999999999988755

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.00  E-value=6.6e-10  Score=91.68  Aligned_cols=96  Identities=15%  Similarity=0.071  Sum_probs=61.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----CCHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----VDESLGR   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~   74 (173)
                      |||++++  ....++.++|++|+|||+++.+++..... +...+....  ...|+|||+||+|+.+...    ...++..
T Consensus        92 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~--~~~~iIVviNK~Dl~~~~~~~~~~~~~ei~  169 (426)
T TIGR00483        92 CPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTL--GINQLIVAINKMDSVNYDEEEFEAIKKEVS  169 (426)
T ss_pred             CCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHc--CCCeEEEEEEChhccCccHHHHHHHHHHHH
Confidence            7898775  23345789999999999998754321111 111222222  2357999999999963211    1123445


Q ss_pred             HHhhhcC-----CeEEEEcccCCcccHHHHH
Q psy2792          75 STAVKYN-----CTFHEVSVADNSPAIYQAF  100 (173)
Q Consensus        75 ~~~~~~~-----~~~~e~Sak~g~~~v~~lf  100 (173)
                      .+++..+     +.++++||++|. ||.+++
T Consensus       170 ~~~~~~g~~~~~~~~i~iSA~~g~-ni~~~~  199 (426)
T TIGR00483       170 NLIKKVGYNPDTVPFIPISAWNGD-NVIKKS  199 (426)
T ss_pred             HHHHHcCCCcccceEEEeeccccc-cccccc
Confidence            5665554     569999999999 998744

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=98.98  E-value=1.5e-09  Score=89.06  Aligned_cols=99  Identities=15%  Similarity=0.127  Sum_probs=65.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLG   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~   73 (173)
                      |+|++++  .....+..+|++|+|+|+++.    ++.+.+.    .+...   ...|+++|+||+|+.+....  ..++.
T Consensus        87 tPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~----~l~~~---gi~~iIVvvNK~Dl~~~~~~~~~~~~i  159 (406)
T TIGR03680        87 APGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLM----ALEII---GIKNIVIVQNKIDLVSKEKALENYEEI  159 (406)
T ss_pred             CCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHH----HHHHc---CCCeEEEEEEccccCCHHHHHHHHHHH
Confidence            6788764  334446678999999999863    2333332    22221   22468999999998643211  12233


Q ss_pred             HHHhhhc---CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          74 RSTAVKY---NCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        74 ~~~~~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ..+....   ++.++++||++|. |+++++++|...+.
T Consensus       160 ~~~l~~~~~~~~~ii~vSA~~g~-gi~~L~e~L~~~l~  196 (406)
T TIGR03680       160 KEFVKGTVAENAPIIPVSALHNA-NIDALLEAIEKFIP  196 (406)
T ss_pred             HhhhhhcccCCCeEEEEECCCCC-ChHHHHHHHHHhCC
Confidence            3333332   5679999999999 99999999998664

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=98.97  E-value=7.6e-09  Score=78.86  Aligned_cols=50  Identities=14%  Similarity=0.083  Sum_probs=39.9

Q ss_pred             CCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          50 NVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .+|+++|+||+|+..     .++...++..  ..++++||++|. |++++|+.+.+.+
T Consensus       176 y~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~-gi~~l~~~i~~~L  225 (233)
T cd01896         176 YIPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGL-NLDELKERIWDKL  225 (233)
T ss_pred             EeeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCC-CHHHHHHHHHHHh
Confidence            369999999999853     4555555553  358999999999 9999999998755

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.95  E-value=2.7e-09  Score=91.17  Aligned_cols=104  Identities=12%  Similarity=0.072  Sum_probs=74.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHh-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTA-   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~-   77 (173)
                      |||++++  ....+++.+|++|+|+|.++. .+.....|+..+..    .++|+|+|+||+|+.+.+.. ..++...+. 
T Consensus        71 TPGh~DF~~ev~~~l~~aD~alLVVDa~~G-~~~qT~~~l~~a~~----~~ip~IVviNKiD~~~a~~~~v~~ei~~l~~  145 (594)
T TIGR01394        71 TPGHADFGGEVERVLGMVDGVLLLVDASEG-PMPQTRFVLKKALE----LGLKPIVVINKIDRPSARPDEVVDEVFDLFA  145 (594)
T ss_pred             CCCHHHHHHHHHHHHHhCCEEEEEEeCCCC-CcHHHHHHHHHHHH----CCCCEEEEEECCCCCCcCHHHHHHHHHHHHH
Confidence            8999885  667899999999999999863 34555667666665    35899999999998643310 012223332 


Q ss_pred             ------hhcCCeEEEEcccCCc---------ccHHHHHHHHHHHHhcC
Q psy2792          78 ------VKYNCTFHEVSVADNS---------PAIYQAFDHLLTESRGG  110 (173)
Q Consensus        78 ------~~~~~~~~e~Sak~g~---------~~v~~lf~~l~~~i~~~  110 (173)
                            ....++++.+||++|.         .|+..+|+.|++.+...
T Consensus       146 ~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P  193 (594)
T TIGR01394       146 ELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP  193 (594)
T ss_pred             hhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence                  2234678999999984         16999999999888653

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=98.95  E-value=3.6e-09  Score=86.92  Aligned_cols=99  Identities=16%  Similarity=0.160  Sum_probs=64.3

Q ss_pred             CCCCCCccHhhhccc---CcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHH
Q psy2792           2 TIGLTEGTLTAMICW---ADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESL   72 (173)
Q Consensus         2 TaG~e~~~~~~y~~~---ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~   72 (173)
                      |||++++ ...|+..   +|++|+|+|+++.    ++++.+..    +...   ...|+++|+||+|+.+....  ..++
T Consensus        92 tPG~~~f-~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~----l~~~---~i~~iiVVlNK~Dl~~~~~~~~~~~~  163 (411)
T PRK04000         92 APGHETL-MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMA----LDII---GIKNIVIVQNKIDLVSKERALENYEQ  163 (411)
T ss_pred             CCCHHHH-HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHH----HHHc---CCCcEEEEEEeeccccchhHHHHHHH
Confidence            6777553 3445554   6999999999953    34443322    2221   22368999999998653221  1223


Q ss_pred             HHHHhhhc---CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          73 GRSTAVKY---NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        73 ~~~~~~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...++...   +++++++||++|. |++++|+.|...+..
T Consensus       164 i~~~l~~~~~~~~~ii~vSA~~g~-gI~~L~~~L~~~l~~  202 (411)
T PRK04000        164 IKEFVKGTVAENAPIIPVSALHKV-NIDALIEAIEEEIPT  202 (411)
T ss_pred             HHHHhccccCCCCeEEEEECCCCc-CHHHHHHHHHHhCCC
Confidence            33444322   4679999999999 999999999887643

>KOG0074|consensus

Probab=98.95  E-value=8.6e-10  Score=76.46  Aligned_cols=97  Identities=21%  Similarity=0.233  Sum_probs=72.9

Q ss_pred             ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH--H--hhhcCCe
Q psy2792           8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS--T--AVKYNCT   83 (173)
Q Consensus         8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~--~--~~~~~~~   83 (173)
                      +.+..||.+.|++|||.|.+|...|+++...+.++.+......+|+.+.+||.|+...-.+. +.+..  +  .....+.
T Consensus        77 pyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~e-eia~klnl~~lrdRswh  155 (185)
T KOG0074|consen   77 PYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWH  155 (185)
T ss_pred             hhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcchH-HHHHhcchhhhhhceEE
Confidence            58999999999999999999999999987777666665545789999999999986432221 11111  1  1222356


Q ss_pred             EEEEcccCCcccHHHHHHHHHHH
Q psy2792          84 FHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        84 ~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      ..+|||.+++ ++.+..+|+...
T Consensus       156 Iq~csals~e-g~~dg~~wv~sn  177 (185)
T KOG0074|consen  156 IQECSALSLE-GSTDGSDWVQSN  177 (185)
T ss_pred             eeeCcccccc-CccCcchhhhcC
Confidence            7899999999 999998888753

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=98.94  E-value=5.2e-09  Score=77.04  Aligned_cols=95  Identities=8%  Similarity=-0.038  Sum_probs=61.9

Q ss_pred             cHhhhcccC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhhhcCCe
Q psy2792           9 TLTAMICWA---DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAVKYNCT   83 (173)
Q Consensus         9 ~~~~y~~~a---d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~~~~   83 (173)
                      +...|+..+   +++++|+|.+++.+...  .++......   .++|+++|+||+|+.+..+..  .+.+..........
T Consensus        96 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~--~~i~~~l~~---~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~  170 (196)
T PRK00454         96 LIEEYLRTRENLKGVVLLIDSRHPLKELD--LQMIEWLKE---YGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDE  170 (196)
T ss_pred             HHHHHHHhCccceEEEEEEecCCCCCHHH--HHHHHHHHH---cCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCc
Confidence            445666655   67888999887543332  222222221   358999999999986432211  12233333333577


Q ss_pred             EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          84 FHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        84 ~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++++||+++. |++++|+.|...+.+
T Consensus       171 ~~~~Sa~~~~-gi~~l~~~i~~~~~~  195 (196)
T PRK00454        171 VILFSSLKKQ-GIDELRAAIAKWLAE  195 (196)
T ss_pred             eEEEEcCCCC-CHHHHHHHHHHHhcC
Confidence            9999999999 999999999877654

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=98.91  E-value=6.3e-09  Score=89.30  Aligned_cols=99  Identities=15%  Similarity=0.139  Sum_probs=67.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC--HHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD--ESLG   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~--~~~~   73 (173)
                      |||++++  .....+.++|++++|+|+++   +++.+.+.    .+..    .++| +|||+||+|+.+...+.  .++.
T Consensus        58 tPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~----il~~----lgi~~iIVVlNKiDlv~~~~~~~v~~ei  129 (614)
T PRK10512         58 VPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLA----ILQL----TGNPMLTVALTKADRVDEARIAEVRRQV  129 (614)
T ss_pred             CCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHH----HHHH----cCCCeEEEEEECCccCCHHHHHHHHHHH
Confidence            7888775  33456889999999999987   44554432    2222    2355 57999999986432211  2233


Q ss_pred             HHHhhhcC---CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          74 RSTAVKYN---CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        74 ~~~~~~~~---~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..+....+   .+++++||++|. |++++++.|......
T Consensus       130 ~~~l~~~~~~~~~ii~VSA~tG~-gI~~L~~~L~~~~~~  167 (614)
T PRK10512        130 KAVLREYGFAEAKLFVTAATEGR-GIDALREHLLQLPER  167 (614)
T ss_pred             HHHHHhcCCCCCcEEEEeCCCCC-CCHHHHHHHHHhhcc
Confidence            44444443   579999999999 999999999875443

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=98.91  E-value=2.6e-09  Score=76.32  Aligned_cols=86  Identities=16%  Similarity=0.161  Sum_probs=62.9

Q ss_pred             cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792           9 TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE   86 (173)
Q Consensus         9 ~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e   86 (173)
                      +...|+  ...|++|+|.|.++.+   .-.....++.+.    ++|+|+|.||+|+...+.+.. ....+.+.+|++++.
T Consensus        69 v~~~~l~~~~~D~ii~VvDa~~l~---r~l~l~~ql~e~----g~P~vvvlN~~D~a~~~g~~i-d~~~Ls~~Lg~pvi~  140 (156)
T PF02421_consen   69 VARDYLLSEKPDLIIVVVDATNLE---RNLYLTLQLLEL----GIPVVVVLNKMDEAERKGIEI-DAEKLSERLGVPVIP  140 (156)
T ss_dssp             HHHHHHHHTSSSEEEEEEEGGGHH---HHHHHHHHHHHT----TSSEEEEEETHHHHHHTTEEE--HHHHHHHHTS-EEE
T ss_pred             HHHHHHhhcCCCEEEEECCCCCHH---HHHHHHHHHHHc----CCCEEEEEeCHHHHHHcCCEE-CHHHHHHHhCCCEEE
Confidence            556665  5899999999998753   223344455553    599999999999864433322 345667778999999


Q ss_pred             EcccCCcccHHHHHHHH
Q psy2792          87 VSVADNSPAIYQAFDHL  103 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l  103 (173)
                      +||+++. |++++++.|
T Consensus       141 ~sa~~~~-g~~~L~~~I  156 (156)
T PF02421_consen  141 VSARTGE-GIDELKDAI  156 (156)
T ss_dssp             EBTTTTB-THHHHHHHH
T ss_pred             EEeCCCc-CHHHHHhhC
Confidence            9999999 999998865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.89  E-value=4.6e-09  Score=86.68  Aligned_cols=96  Identities=14%  Similarity=0.043  Sum_probs=59.2

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----CCHHHHHH
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----VDESLGRS   75 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v~~~~~~~   75 (173)
                      |||++++.  ....+.++|++|+|+|++++..+.....+...+....  ...|+++|+||+|+.+...    ...++...
T Consensus        91 tpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~--~~~~iivviNK~Dl~~~~~~~~~~~~~~i~~  168 (425)
T PRK12317         91 CPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL--GINQLIVAINKMDAVNYDEKRYEEVKEEVSK  168 (425)
T ss_pred             CCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc--CCCeEEEEEEccccccccHHHHHHHHHHHHH
Confidence            89987752  2344679999999999987322211112221222222  2246999999999964211    11234444


Q ss_pred             HhhhcC-----CeEEEEcccCCcccHHHHH
Q psy2792          76 TAVKYN-----CTFHEVSVADNSPAIYQAF  100 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g~~~v~~lf  100 (173)
                      ++...+     +.++++||++|. |+++++
T Consensus       169 ~l~~~g~~~~~~~ii~iSA~~g~-gi~~~~  197 (425)
T PRK12317        169 LLKMVGYKPDDIPFIPVSAFEGD-NVVKKS  197 (425)
T ss_pred             HHHhhCCCcCcceEEEeecccCC-Cccccc
Confidence            554444     468999999999 998754

>cd01858 NGP_1 NGP-1

Probab=98.88  E-value=8.5e-09  Score=73.76  Aligned_cols=88  Identities=16%  Similarity=0.061  Sum_probs=57.1

Q ss_pred             hcccCcEEEEEEeCCChhh--HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792          13 MICWADGCIIVYSLIDKES--FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA   90 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak   90 (173)
                      -+.+||++++|.|+.++..  ...+..+   +...  ..+.|+++|.||+|+.+...+ ......+.+.+....+.+||+
T Consensus         5 ~l~~aD~il~VvD~~~p~~~~~~~i~~~---l~~~--~~~~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~   78 (157)
T cd01858           5 VIDSSDVVIQVLDARDPMGTRCKHVEEY---LKKE--KPHKHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASIN   78 (157)
T ss_pred             hhhhCCEEEEEEECCCCccccCHHHHHH---HHhc--cCCCCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecc
Confidence            4789999999999998632  2222222   2222  245899999999999542211 112222333233335789999


Q ss_pred             CCcccHHHHHHHHHHHH
Q psy2792          91 DNSPAIYQAFDHLLTES  107 (173)
Q Consensus        91 ~g~~~v~~lf~~l~~~i  107 (173)
                      .+. |++++.+.+...+
T Consensus        79 ~~~-~~~~L~~~l~~~~   94 (157)
T cd01858          79 NPF-GKGSLIQLLRQFS   94 (157)
T ss_pred             ccc-cHHHHHHHHHHHH
Confidence            999 9999999987654

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK04004 translation initiation factor IF-2; Validated

Probab=98.87  E-value=1.8e-08  Score=86.13  Aligned_cols=95  Identities=17%  Similarity=0.067  Sum_probs=65.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC----C---
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV----D---   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v----~---   69 (173)
                      |||++++  ++..++..+|++|+|||+++   +++++.+..+    ..    .++|+++|+||+|+......    .   
T Consensus        78 TPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~----~~----~~vpiIvviNK~D~~~~~~~~~~~~~~e  149 (586)
T PRK04004         78 TPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINIL----KR----RKTPFVVAANKIDRIPGWKSTEDAPFLE  149 (586)
T ss_pred             CCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHH----HH----cCCCEEEEEECcCCchhhhhhcCchHHH
Confidence            8999885  67778899999999999997   6677655422    22    46899999999998521100    0   


Q ss_pred             -----HHH-----------HHHHhhhc---------------CCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          70 -----ESL-----------GRSTAVKY---------------NCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        70 -----~~~-----------~~~~~~~~---------------~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                           ...           ........               .+.++++||++|. |+++++..+..
T Consensus       150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe-Gi~dLl~~i~~  215 (586)
T PRK04004        150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE-GIPDLLMVLAG  215 (586)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC-ChHHHHHHHHH
Confidence                 000           00011111               2568999999999 99999988764

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=98.86  E-value=1.6e-08  Score=75.47  Aligned_cols=63  Identities=19%  Similarity=0.218  Sum_probs=49.5

Q ss_pred             CCCCCCc--cHhhhcccC-cEEEEEEeCCCh-hhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWA-DGCIIVYSLIDK-ESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~a-d~iilv~d~~~~-~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~   64 (173)
                      |+|+++.  ....||+++ +++|||+|.++. .++..+..|+..+.....  ...+|++||+||+|+..
T Consensus        55 ~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~  123 (203)
T cd04105          55 VPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFT  123 (203)
T ss_pred             CCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcc
Confidence            7888873  667889999 999999999997 678887777666543221  25799999999999853

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=98.85  E-value=2.4e-08  Score=87.67  Aligned_cols=88  Identities=15%  Similarity=0.086  Sum_probs=68.2

Q ss_pred             hhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792          11 TAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus        11 ~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      ..|+  ..+|++|+|+|.++.+.   ...|..++.+    .++|+++|+||+|+.+.+.+ ..+.+.+.+.+|++++++|
T Consensus        78 ~~~l~~~~aD~vI~VvDat~ler---~l~l~~ql~e----~giPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiS  149 (772)
T PRK09554         78 CHYILSGDADLLINVVDASNLER---NLYLTLQLLE----LGIPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLV  149 (772)
T ss_pred             HHHHhccCCCEEEEEecCCcchh---hHHHHHHHHH----cCCCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEE
Confidence            3454  38999999999988543   2335555554    35899999999998755555 3456777888999999999


Q ss_pred             ccCCcccHHHHHHHHHHHH
Q psy2792          89 VADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~i  107 (173)
                      |++|. |++++++.+.+..
T Consensus       150 A~~g~-GIdeL~~~I~~~~  167 (772)
T PRK09554        150 STRGR-GIEALKLAIDRHQ  167 (772)
T ss_pred             eecCC-CHHHHHHHHHHhh
Confidence            99999 9999999888754

>PRK14845 translation initiation factor IF-2; Provisional

Probab=98.84  E-value=2.8e-08  Score=89.07  Aligned_cols=96  Identities=17%  Similarity=0.110  Sum_probs=65.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE------   70 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~------   70 (173)
                      |||++.+  ++..++..+|++|+|+|+++   +++++.+.    .+..    .++|+++|+||+|+.....+..      
T Consensus       533 TPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~----~lk~----~~iPiIVViNKiDL~~~~~~~~~~~~~~  604 (1049)
T PRK14845        533 TPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAIN----ILRQ----YKTPFVVAANKIDLIPGWNISEDEPFLL  604 (1049)
T ss_pred             CCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHH----HHHH----cCCCEEEEEECCCCccccccccchhhhh
Confidence            8999874  66677889999999999987   55665543    2222    3589999999999853221100      


Q ss_pred             ------HH-HHH-----------Hh------------hhc--CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          71 ------SL-GRS-----------TA------------VKY--NCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        71 ------~~-~~~-----------~~------------~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                            +. ..+           ++            +.+  .+.+++|||++|+ |+++|...|...
T Consensus       605 ~~~~q~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe-GId~Ll~~l~~l  671 (1049)
T PRK14845        605 NFNEQDQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE-GIPELLMMVAGL  671 (1049)
T ss_pred             hhhhhHHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC-CHHHHHHHHHHh
Confidence                  00 000           11            111  2568999999999 999999887643

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.83  E-value=9.3e-09  Score=76.96  Aligned_cols=93  Identities=18%  Similarity=0.065  Sum_probs=57.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC----CHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV----DESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v----~~~~~~~   75 (173)
                      |||++++  ....++..+|++|+|+|+++... +........+.. .  ...++|+|+||+|+......    ...+...
T Consensus        84 TpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~-~~~~~~~~~~~~-~--~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~  159 (208)
T cd04166          84 TPGHEQYTRNMVTGASTADLAILLVDARKGVL-EQTRRHSYILSL-L--GIRHVVVAVNKMDLVDYSEEVFEEIVADYLA  159 (208)
T ss_pred             CCcHHHHHHHHHHhhhhCCEEEEEEECCCCcc-HhHHHHHHHHHH-c--CCCcEEEEEEchhcccCCHHHHHHHHHHHHH
Confidence            8998774  34456899999999999987521 111222222222 1  22457889999998642110    0123344


Q ss_pred             HhhhcC---CeEEEEcccCCcccHHHH
Q psy2792          76 TAVKYN---CTFHEVSVADNSPAIYQA   99 (173)
Q Consensus        76 ~~~~~~---~~~~e~Sak~g~~~v~~l   99 (173)
                      +....+   ..++.+||++|. |+.+.
T Consensus       160 ~~~~~~~~~~~ii~iSA~~g~-ni~~~  185 (208)
T cd04166         160 FAAKLGIEDITFIPISALDGD-NVVSR  185 (208)
T ss_pred             HHHHcCCCCceEEEEeCCCCC-CCccC
Confidence            445555   348999999999 98743

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=98.77  E-value=3.2e-08  Score=70.67  Aligned_cols=83  Identities=14%  Similarity=0.117  Sum_probs=55.4

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHH-HHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccH
Q psy2792          18 DGCIIVYSLIDKESFDYAVSTLQN-LQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAI   96 (173)
Q Consensus        18 d~iilv~d~~~~~s~~~~~~~~~~-i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v   96 (173)
                      |++|+|+|+.++.+..  ..|+.. ...   ..+.|+|+|.||+|+.....+ .+....+....+..++.+||+++. |+
T Consensus         1 Dvvl~VvD~~~p~~~~--~~~i~~~~~~---~~~~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~-gi   73 (155)
T cd01849           1 DVILEVLDARDPLGTR--SPDIERVLIK---EKGKKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQ-GI   73 (155)
T ss_pred             CEEEEEEeccCCcccc--CHHHHHHHHh---cCCCCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCc-Ch
Confidence            7899999999876544  234441 221   246899999999998532111 111112323335568999999999 99


Q ss_pred             HHHHHHHHHHH
Q psy2792          97 YQAFDHLLTES  107 (173)
Q Consensus        97 ~~lf~~l~~~i  107 (173)
                      +++++.+....
T Consensus        74 ~~L~~~i~~~~   84 (155)
T cd01849          74 EKKESAFTKQT   84 (155)
T ss_pred             hhHHHHHHHHh
Confidence            99999887654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>PRK09866 hypothetical protein; Provisional

Probab=98.76  E-value=1.1e-07  Score=81.03  Aligned_cols=100  Identities=20%  Similarity=0.151  Sum_probs=65.3

Q ss_pred             CCCCCCc-------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH
Q psy2792           2 TIGLTEG-------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR   74 (173)
Q Consensus         2 TaG~e~~-------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~   74 (173)
                      |+|....       .....+.+||+|+||+|.+...+..+ ......+....  ...|+++|.||+|+.+...-..+...
T Consensus       237 TPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~D-eeIlk~Lkk~~--K~~PVILVVNKIDl~dreeddkE~Ll  313 (741)
T PRK09866        237 TPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISD-EEVREAILAVG--QSVPLYVLVNKFDQQDRNSDDADQVR  313 (741)
T ss_pred             CCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhH-HHHHHHHHhcC--CCCCEEEEEEcccCCCcccchHHHHH
Confidence            7888641       23346999999999999987533332 22333444322  23699999999998532221233333


Q ss_pred             HHhh----hcC---CeEEEEcccCCcccHHHHHHHHHH
Q psy2792          75 STAV----KYN---CTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        75 ~~~~----~~~---~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      .+..    ..+   ..+|.+||+.|. |++++++.|..
T Consensus       314 e~V~~~L~q~~i~f~eIfPVSAlkG~-nid~LLdeI~~  350 (741)
T PRK09866        314 ALISGTLMKGCITPQQIFPVSSMWGY-LANRARHELAN  350 (741)
T ss_pred             HHHHHHHHhcCCCCceEEEEeCCCCC-CHHHHHHHHHh
Confidence            3322    112   358999999999 99999998876

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=98.76  E-value=4.7e-08  Score=79.88  Aligned_cols=97  Identities=15%  Similarity=0.149  Sum_probs=68.4

Q ss_pred             CCCCCC--------c--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTE--------G--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~--------~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++        |  ....-+.+||.+++|+|.+.+.+-.+.. .+.   ..  ..+.|+++|.||+||........ 
T Consensus       272 TAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~-~~~---~~--~~~~~~i~v~NK~DL~~~~~~~~-  344 (454)
T COG0486         272 TAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLA-LIE---LL--PKKKPIIVVLNKADLVSKIELES-  344 (454)
T ss_pred             cCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCchhhHH-HHH---hc--ccCCCEEEEEechhcccccccch-
Confidence            999987        3  5556799999999999999862222111 111   11  36789999999999975433111 


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                          .....+..++.+||++|. |++.+.+.|...+...
T Consensus       345 ----~~~~~~~~~i~iSa~t~~-Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         345 ----EKLANGDAIISISAKTGE-GLDALREAIKQLFGKG  378 (454)
T ss_pred             ----hhccCCCceEEEEecCcc-CHHHHHHHHHHHHhhc
Confidence                111224568999999999 9999999998877664

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.74  E-value=3.6e-08  Score=69.35  Aligned_cols=76  Identities=14%  Similarity=0.006  Sum_probs=52.3

Q ss_pred             hhhcccCcEEEEEEeCCChhhHH--HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFD--YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      ...+.++|++++|+|+.++.+..  .+..|+...   .  .+.|+++|+||+|+.....  ......+.+..+..++.+|
T Consensus         6 ~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~--~~k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iS   78 (141)
T cd01857           6 WRVVERSDIVVQIVDARNPLLFRPPDLERYVKEV---D--PRKKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFS   78 (141)
T ss_pred             HHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhc---c--CCCcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEE
Confidence            34688999999999999876543  334444332   1  4689999999999854222  1223344555667899999


Q ss_pred             ccCCc
Q psy2792          89 VADNS   93 (173)
Q Consensus        89 ak~g~   93 (173)
                      |+++.
T Consensus        79 a~~~~   83 (141)
T cd01857          79 ALKEN   83 (141)
T ss_pred             ecCCC
Confidence            99876

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=98.74  E-value=1.8e-08  Score=73.48  Aligned_cols=82  Identities=12%  Similarity=0.094  Sum_probs=52.9

Q ss_pred             Hhhhccc---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHHHHhhhcC--C
Q psy2792          10 LTAMICW---ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGRSTAVKYN--C   82 (173)
Q Consensus        10 ~~~y~~~---ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~--~   82 (173)
                      ...|++.   +|++|+|+|.++.-+..... ++..+..    .++|+++|+||+|+......  ..++....+...+  +
T Consensus        91 ~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~-~~~~~~~----~~~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~  165 (179)
T TIGR03598        91 IEEYLEKRENLKGVVLLMDIRHPLKELDLE-MLEWLRE----RGIPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDP  165 (179)
T ss_pred             HHHHHHhChhhcEEEEEecCCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCC
Confidence            3466664   57999999998754444432 2233332    35899999999998643211  1233444444443  4


Q ss_pred             eEEEEcccCCcccHH
Q psy2792          83 TFHEVSVADNSPAIY   97 (173)
Q Consensus        83 ~~~e~Sak~g~~~v~   97 (173)
                      .+|++||++|+ ||+
T Consensus       166 ~v~~~Sa~~g~-gi~  179 (179)
T TIGR03598       166 SVQLFSSLKKT-GID  179 (179)
T ss_pred             ceEEEECCCCC-CCC
Confidence            79999999999 873

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd01856 YlqF YlqF

Probab=98.73  E-value=5.1e-08  Score=70.77  Aligned_cols=88  Identities=13%  Similarity=-0.045  Sum_probs=58.8

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA   90 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak   90 (173)
                      ...+.+||++++|+|+.++..... ..+..    ..  .+.|+++|.||+|+.+...+  ....++....+..++.+||+
T Consensus        14 ~~~i~~aD~il~v~D~~~~~~~~~-~~i~~----~~--~~k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~   84 (171)
T cd01856          14 KEKLKLVDLVIEVRDARIPLSSRN-PLLEK----IL--GNKPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAK   84 (171)
T ss_pred             HHHHhhCCEEEEEeeccCccCcCC-hhhHh----Hh--cCCCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECC
Confidence            456889999999999987643221 11222    11  34789999999998532111  11112223334568999999


Q ss_pred             CCcccHHHHHHHHHHHHh
Q psy2792          91 DNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        91 ~g~~~v~~lf~~l~~~i~  108 (173)
                      ++. |++++...+...+.
T Consensus        85 ~~~-gi~~L~~~l~~~l~  101 (171)
T cd01856          85 SGK-GVKKLLKAAKKLLK  101 (171)
T ss_pred             Ccc-cHHHHHHHHHHHHH
Confidence            999 99999999988763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG2262 HflX GTPases [General function prediction only]

Probab=98.71  E-value=1.6e-07  Score=75.66  Aligned_cols=90  Identities=16%  Similarity=0.090  Sum_probs=64.6

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCc
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNS   93 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~   93 (173)
                      ..+||++++|+|.+++...+.+..-..-+.+.. ..++|+|+|.||+|+.....     .........-..+.+||++|.
T Consensus       269 ~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~-~~~~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~  342 (411)
T COG2262         269 VKEADLLLHVVDASDPEILEKLEAVEDVLAEIG-ADEIPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGE  342 (411)
T ss_pred             hhcCCEEEEEeecCChhHHHHHHHHHHHHHHcC-CCCCCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCc
Confidence            568999999999999976666655444444433 46699999999999754222     111111111158999999999


Q ss_pred             ccHHHHHHHHHHHHhcC
Q psy2792          94 PAIYQAFDHLLTESRGG  110 (173)
Q Consensus        94 ~~v~~lf~~l~~~i~~~  110 (173)
                       |++.|+..|...+...
T Consensus       343 -gl~~L~~~i~~~l~~~  358 (411)
T COG2262         343 -GLDLLRERIIELLSGL  358 (411)
T ss_pred             -CHHHHHHHHHHHhhhc
Confidence             9999999999888753

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.71  E-value=1.3e-07  Score=77.07  Aligned_cols=94  Identities=21%  Similarity=0.140  Sum_probs=64.8

Q ss_pred             CCCCCCc-----------cHhhhcccCcEEEEEEeCCChhh--HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC
Q psy2792           2 TIGLTEG-----------TLTAMICWADGCIIVYSLIDKES--FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV   68 (173)
Q Consensus         2 TaG~e~~-----------~~~~y~~~ad~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v   68 (173)
                      |+|.+..           .+..-+..||++|||+|...--+  -+.+..|   ++.    .+.|+|||+||+|-..    
T Consensus        58 TgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~---Lr~----~~kpviLvvNK~D~~~----  126 (444)
T COG1160          58 TGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKI---LRR----SKKPVILVVNKIDNLK----  126 (444)
T ss_pred             CCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHH---HHh----cCCCEEEEEEcccCch----
Confidence            8888851           34456889999999999876211  1222233   222    4689999999999642    


Q ss_pred             CHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          69 DESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        69 ~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                       .+....-...+|+ +.+.+||..|. |+.+|.+.++..+.
T Consensus       127 -~e~~~~efyslG~g~~~~ISA~Hg~-Gi~dLld~v~~~l~  165 (444)
T COG1160         127 -AEELAYEFYSLGFGEPVPISAEHGR-GIGDLLDAVLELLP  165 (444)
T ss_pred             -hhhhHHHHHhcCCCCceEeehhhcc-CHHHHHHHHHhhcC
Confidence             2222222234554 48999999999 99999999999874

>cd04167 Snu114p Snu114p subfamily

Probab=98.69  E-value=6.9e-08  Score=72.46  Aligned_cols=57  Identities=19%  Similarity=0.327  Sum_probs=43.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |||++++  ....++..+|++|+|||+++..++.. ..|+..+..    .++|+++|+||+|+.
T Consensus        78 tpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~-~~~~~~~~~----~~~p~iiviNK~D~~  136 (213)
T cd04167          78 TPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT-ERLIRHAIL----EGLPIVLVINKIDRL  136 (213)
T ss_pred             CCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHH----cCCCEEEEEECcccC
Confidence            8999875  67788999999999999987665543 344444433    348999999999974

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd04165 GTPBP1_like GTPBP1-like

Probab=98.69  E-value=1.5e-07  Score=71.40  Aligned_cols=97  Identities=14%  Similarity=0.059  Sum_probs=60.0

Q ss_pred             CCCCCCccHhhh--c--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHH
Q psy2792           2 TIGLTEGTLTAM--I--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRS   75 (173)
Q Consensus         2 TaG~e~~~~~~y--~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~   75 (173)
                      |||.+++.....  +  ..+|++++|+|+..... .....++..+..    .++|+++|.||+|+.+...+.  .++...
T Consensus        91 tpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~-~~d~~~l~~l~~----~~ip~ivvvNK~D~~~~~~~~~~~~~l~~  165 (224)
T cd04165          91 LAGHERYLKTTLFGLTGYAPDYAMLVVAANAGII-GMTKEHLGLALA----LNIPVFVVVTKIDLAPANILQETLKDLKR  165 (224)
T ss_pred             CCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEECccccCHHHHHHHHHHHHH
Confidence            788877532222  3  26899999999876432 222334444444    358999999999985432211  111122


Q ss_pred             Hhhh--------------------------cCCeEEEEcccCCcccHHHHHHHHH
Q psy2792          76 TAVK--------------------------YNCTFHEVSVADNSPAIYQAFDHLL  104 (173)
Q Consensus        76 ~~~~--------------------------~~~~~~e~Sak~g~~~v~~lf~~l~  104 (173)
                      +...                          ...++|.+||.+|. |++++...|.
T Consensus       166 ~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~-Gi~~L~~~L~  219 (224)
T cd04165         166 ILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE-GLDLLHAFLN  219 (224)
T ss_pred             HhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc-CHHHHHHHHH
Confidence            2211                          12478999999999 9999987664

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK10218 GTP-binding protein; Provisional

Probab=98.68  E-value=1.5e-07  Score=80.67  Aligned_cols=104  Identities=11%  Similarity=0.070  Sum_probs=70.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~   78 (173)
                      |+|+.++  .+..+++.+|++|+|+|+++... .....++..+..    .++|+++|.||+|+...+.. ..++...+..
T Consensus        75 TPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~-~qt~~~l~~a~~----~gip~IVviNKiD~~~a~~~~vl~ei~~l~~  149 (607)
T PRK10218         75 TPGHADFGGEVERVMSMVDSVLLVVDAFDGPM-PQTRFVTKKAFA----YGLKPIVVINKVDRPGARPDWVVDQVFDLFV  149 (607)
T ss_pred             CCCcchhHHHHHHHHHhCCEEEEEEecccCcc-HHHHHHHHHHHH----cCCCEEEEEECcCCCCCchhHHHHHHHHHHh
Confidence            8999885  77889999999999999987422 222333344433    35899999999998643211 0122223221


Q ss_pred             -------hcCCeEEEEcccCCcc---------cHHHHHHHHHHHHhcC
Q psy2792          79 -------KYNCTFHEVSVADNSP---------AIYQAFDHLLTESRGG  110 (173)
Q Consensus        79 -------~~~~~~~e~Sak~g~~---------~v~~lf~~l~~~i~~~  110 (173)
                             ...++++.+||++|..         ++..+|+.|+..+...
T Consensus       150 ~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P  197 (607)
T PRK10218        150 NLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP  197 (607)
T ss_pred             ccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence                   1346789999999971         3788888888877643

>PRK13796 GTPase YqeH; Provisional

Probab=98.67  E-value=1.4e-07  Score=76.37  Aligned_cols=84  Identities=23%  Similarity=0.235  Sum_probs=60.5

Q ss_pred             cccCc-EEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCC---eEE
Q psy2792          14 ICWAD-GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNC---TFH   85 (173)
Q Consensus        14 ~~~ad-~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~---~~~   85 (173)
                      +..+| .|++|+|+.|..     ..|...+.+..  .+.|+++|+||+||.. ..+..+....    +++..++   .++
T Consensus        66 i~~~~~lIv~VVD~~D~~-----~s~~~~L~~~~--~~kpviLViNK~DLl~-~~~~~~~i~~~l~~~~k~~g~~~~~v~  137 (365)
T PRK13796         66 IGDSDALVVNVVDIFDFN-----GSWIPGLHRFV--GNNPVLLVGNKADLLP-KSVKKNKVKNWLRQEAKELGLRPVDVV  137 (365)
T ss_pred             hcccCcEEEEEEECccCC-----CchhHHHHHHh--CCCCEEEEEEchhhCC-CccCHHHHHHHHHHHHHhcCCCcCcEE
Confidence            45566 899999997743     34666666654  4679999999999964 2333333333    3555565   579


Q ss_pred             EEcccCCcccHHHHHHHHHHH
Q psy2792          86 EVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        86 e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .+||+++. |++++++.|.+.
T Consensus       138 ~vSAk~g~-gI~eL~~~I~~~  157 (365)
T PRK13796        138 LISAQKGH-GIDELLEAIEKY  157 (365)
T ss_pred             EEECCCCC-CHHHHHHHHHHh
Confidence            99999999 999999999765

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.67  E-value=3.2e-07  Score=70.16  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=43.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|+.++  ....+++.+|++|+|+|.++.... ....|+..+..    .++|+++|+||+|+.
T Consensus        71 TPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~-~~~~~~~~~~~----~~~P~iivvNK~D~~  129 (237)
T cd04168          71 TPGHMDFIAEVERSLSVLDGAILVISAVEGVQA-QTRILWRLLRK----LNIPTIIFVNKIDRA  129 (237)
T ss_pred             CCCccchHHHHHHHHHHhCeEEEEEeCCCCCCH-HHHHHHHHHHH----cCCCEEEEEECcccc
Confidence            8999874  667889999999999999885433 23445555544    358999999999985

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>KOG1489|consensus

Probab=98.67  E-value=1.6e-07  Score=73.49  Aligned_cols=94  Identities=20%  Similarity=0.262  Sum_probs=68.2

Q ss_pred             ccHhhh---cccCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792           8 GTLTAM---ICWADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY   80 (173)
Q Consensus         8 ~~~~~y---~~~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~   80 (173)
                      ++-..|   +..|+.++||+|++..   ..++++.....++..+.. ..+.|.++|+||+|+++..   .....++++.+
T Consensus       263 GlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~l  339 (366)
T KOG1489|consen  263 GLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRL  339 (366)
T ss_pred             cccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHc
Confidence            344444   5579999999999998   778887776666665542 2578999999999985211   12235566655


Q ss_pred             CC-eEEEEcccCCcccHHHHHHHHHH
Q psy2792          81 NC-TFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        81 ~~-~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      .- .++++||+.++ +++++...|-.
T Consensus       340 q~~~V~pvsA~~~e-gl~~ll~~lr~  364 (366)
T KOG1489|consen  340 QNPHVVPVSAKSGE-GLEELLNGLRE  364 (366)
T ss_pred             CCCcEEEeeecccc-chHHHHHHHhh
Confidence            43 48999999999 99999887654

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.64  E-value=3.7e-08  Score=74.30  Aligned_cols=91  Identities=14%  Similarity=0.072  Sum_probs=53.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhh---H----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCC-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKES---F----DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVD-   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s---~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~-   69 (173)
                      |+|+.++  ....++..+|++|+|+|+++...   |    +....|. .... .  ...|+|+|+||+|+...  ..-. 
T Consensus        84 tpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~-~~~~-~--~~~~iiivvNK~Dl~~~~~~~~~~  159 (219)
T cd01883          84 APGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHAL-LART-L--GVKQLIVAVNKMDDVTVNWSEERY  159 (219)
T ss_pred             CCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHH-HHHH-c--CCCeEEEEEEccccccccccHHHH
Confidence            7887653  23344677999999999998421   1    1112221 1222 1  23689999999998631  0000 


Q ss_pred             ---HHHHHHHhhhcC-----CeEEEEcccCCcccHH
Q psy2792          70 ---ESLGRSTAVKYN-----CTFHEVSVADNSPAIY   97 (173)
Q Consensus        70 ---~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~   97 (173)
                         .++...+....+     +.++.|||++|. |++
T Consensus       160 ~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~-gi~  194 (219)
T cd01883         160 DEIKKELSPFLKKVGYNPKDVPFIPISGLTGD-NLI  194 (219)
T ss_pred             HHHHHHHHHHHHHcCCCcCCceEEEeecCcCC-CCC
Confidence               112222233333     569999999999 987

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.64  E-value=1.3e-08  Score=69.27  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=58.3

Q ss_pred             HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792          10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV   89 (173)
Q Consensus        10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa   89 (173)
                      ...++++++++++||+.++.++++.+  |...+.... ..++|+++++||.|+.+...+..+++        ..|+++|+
T Consensus        40 ~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~-k~dl~~~~~~nk~dl~~~~~~~~~~~--------~~~~~~s~  108 (124)
T smart00010       40 DPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGN-KSDLPILVGGNRDVLEEERQVATEEG--------LEFAETSA  108 (124)
T ss_pred             cccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcC-CCCCcEEEEeechhhHhhCcCCHHHH--------HHHHHHhC
Confidence            46688999999999999999999766  887776654 35789999999999854334443332        34668899


Q ss_pred             cCCcccHH
Q psy2792          90 ADNSPAIY   97 (173)
Q Consensus        90 k~g~~~v~   97 (173)
                      +++. |+.
T Consensus       109 ~~~~-~~~  115 (124)
T smart00010      109 KTPE-EGE  115 (124)
T ss_pred             CCcc-hhh
Confidence            9999 874

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=98.60  E-value=1.5e-07  Score=78.13  Aligned_cols=90  Identities=13%  Similarity=0.075  Sum_probs=59.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFD-------YAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD--   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~-------~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~--   69 (173)
                      |||++++  ....++..+|++|+|+|+++ ..|+       .....+..+..    .++| +|+|+||+|+.+. ..+  
T Consensus        92 tPGh~df~~~~~~g~~~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~----~gi~~iIV~vNKmD~~~~-~~~~~  165 (447)
T PLN00043         92 APGHRDFIKNMITGTSQADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFT----LGVKQMICCCNKMDATTP-KYSKA  165 (447)
T ss_pred             CCCHHHHHHHHHhhhhhccEEEEEEEccc-CceecccCCCchHHHHHHHHHH----cCCCcEEEEEEcccCCch-hhhHH
Confidence            7898886  45567899999999999986 3343       22222222222    3464 7889999997521 111  


Q ss_pred             -----HHHHHHHhhhcC-----CeEEEEcccCCcccHHH
Q psy2792          70 -----ESLGRSTAVKYN-----CTFHEVSVADNSPAIYQ   98 (173)
Q Consensus        70 -----~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~   98 (173)
                           .++...++...|     +.|+++||++|+ |+.+
T Consensus       166 ~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~-ni~~  203 (447)
T PLN00043        166 RYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGD-NMIE  203 (447)
T ss_pred             HHHHHHHHHHHHHHHcCCCcccceEEEEeccccc-cccc
Confidence                 234555666655     569999999999 9854

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.59  E-value=6.1e-07  Score=74.40  Aligned_cols=93  Identities=17%  Similarity=0.182  Sum_probs=63.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |||.+-+  |+..=..=+|++|||+|++|   |++.+.+..    ++    ..++|++++.||+|.++.   .+.....-
T Consensus        62 TPGHeAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~h----ak----~a~vP~iVAiNKiDk~~~---np~~v~~e  130 (509)
T COG0532          62 TPGHEAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINH----AK----AAGVPIVVAINKIDKPEA---NPDKVKQE  130 (509)
T ss_pred             CCcHHHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHH----HH----HCCCCEEEEEecccCCCC---CHHHHHHH
Confidence            7888654  44444566899999999998   455443321    22    257999999999998732   22222221


Q ss_pred             -------hhhcC--CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          77 -------AVKYN--CTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        77 -------~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                             .+.++  ..++.+||++|+ |+.+|+..+.-.
T Consensus       131 l~~~gl~~E~~gg~v~~VpvSA~tg~-Gi~eLL~~ill~  168 (509)
T COG0532         131 LQEYGLVPEEWGGDVIFVPVSAKTGE-GIDELLELILLL  168 (509)
T ss_pred             HHHcCCCHhhcCCceEEEEeeccCCC-CHHHHHHHHHHH
Confidence                   22333  558999999999 999999887643

>COG1160 Predicted GTPases [General function prediction only]

Probab=98.57  E-value=8.3e-07  Score=72.52  Aligned_cols=102  Identities=13%  Similarity=0.064  Sum_probs=69.4

Q ss_pred             CCCCCCc-------------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC
Q psy2792           2 TIGLTEG-------------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV   68 (173)
Q Consensus         2 TaG~e~~-------------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v   68 (173)
                      |||.++.             .+..-+..||++++|.|.+.+-+-++ ......+.+    .+.++|+|.||.|+.+....
T Consensus       233 TAGiRrk~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD-~~ia~~i~~----~g~~~vIvvNKWDl~~~~~~  307 (444)
T COG1160         233 TAGIRRKGKITESVEKYSVARTLKAIERADVVLLVIDATEGISEQD-LRIAGLIEE----AGRGIVIVVNKWDLVEEDEA  307 (444)
T ss_pred             CCCCCcccccccceEEEeehhhHhHHhhcCEEEEEEECCCCchHHH-HHHHHHHHH----cCCCeEEEEEccccCCchhh
Confidence            8898871             33445788999999999998754332 233344444    45899999999998765333


Q ss_pred             CHHHHHHH----hhhc-CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          69 DESLGRST----AVKY-NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        69 ~~~~~~~~----~~~~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++....    .... ..+.+.+||++|. ++.++|+.+......
T Consensus       308 ~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~-~i~~l~~~i~~~~~~  352 (444)
T COG1160         308 TMEEFKKKLRRKLPFLDFAPIVFISALTGQ-GLDKLFEAIKEIYEC  352 (444)
T ss_pred             HHHHHHHHHHHHhccccCCeEEEEEecCCC-ChHHHHHHHHHHHHH
Confidence            33333222    2222 2568999999999 999999988765443

>PRK13768 GTPase; Provisional

Probab=98.57  E-value=3.6e-07  Score=70.49  Aligned_cols=88  Identities=11%  Similarity=0.035  Sum_probs=57.5

Q ss_pred             CcEEEEEEeCCChhhHHHH--HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-------------------
Q psy2792          17 ADGCIIVYSLIDKESFDYA--VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-------------------   75 (173)
Q Consensus        17 ad~iilv~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-------------------   75 (173)
                      ++++++|+|........+.  ..|+.......  .++|+++|+||+|+.+..+.  +....                   
T Consensus       129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~--~~~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~  204 (253)
T PRK13768        129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLR--LGLPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGLQ  204 (253)
T ss_pred             CeEEEEEechHHhCCHHHHHHHHHHHHHHHHH--cCCCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccchH
Confidence            8999999999654322222  22333333222  46999999999998654321  11111                   


Q ss_pred             ---------HhhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 ---------TAVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ---------~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                               .....+  ..++++||+++. |++++.++|.+.+..
T Consensus       205 ~~~~~~~~~~i~~~~~~~~vi~iSa~~~~-gl~~L~~~I~~~l~~  248 (253)
T PRK13768        205 GLLSLELLRALEETGLPVRVIPVSAKTGE-GFDELYAAIQEVFCG  248 (253)
T ss_pred             HHHHHHHHHHHHHHCCCCcEEEEECCCCc-CHHHHHHHHHHHcCC
Confidence                     111223  568999999999 999999999887754

>KOG0462|consensus

Probab=98.56  E-value=4.3e-07  Score=75.51  Aligned_cols=104  Identities=12%  Similarity=0.067  Sum_probs=69.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC-CHHHHHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV-DESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v-~~~~~~~~~~   78 (173)
                      |+|.-++  =...-+.-||++|+|+|.+.----+.+..++..+.     .+..+|.|.||+|++..+.- -..+...+..
T Consensus       132 TPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe-----~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~  206 (650)
T KOG0462|consen  132 TPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFE-----AGLAIIPVLNKIDLPSADPERVENQLFELFD  206 (650)
T ss_pred             CCCcccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHH-----cCCeEEEeeeccCCCCCCHHHHHHHHHHHhc
Confidence            8888884  33445778999999999986322222223222222     45789999999999864320 0112233333


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ....+++.+|||+|. |++++++.|++.+....
T Consensus       207 ~~~~~~i~vSAK~G~-~v~~lL~AII~rVPpP~  238 (650)
T KOG0462|consen  207 IPPAEVIYVSAKTGL-NVEELLEAIIRRVPPPK  238 (650)
T ss_pred             CCccceEEEEeccCc-cHHHHHHHHHhhCCCCC
Confidence            334568999999999 99999999999887533

>cd00066 G-alpha G protein alpha subunit

Probab=98.56  E-value=6.7e-07  Score=71.18  Aligned_cols=107  Identities=17%  Similarity=0.086  Sum_probs=73.4

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC----
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL----   65 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~----   65 (173)
                      ++||+.  .+|.+||.+++++|||+|+++.          ..+.+....++.+.....-.++|++|++||.|+-.+    
T Consensus       168 vgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~  247 (317)
T cd00066         168 VGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKK  247 (317)
T ss_pred             CCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcC
Confidence            578765  4899999999999999999974          345555555555555432367999999999996311    


Q ss_pred             ------------ccCCHHHHHHHhhh----------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          66 ------------RQVDESLGRSTAVK----------YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        66 ------------~~v~~~~~~~~~~~----------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                  ..-+.+.+..+...          ..+.+..++|.+-. ++..+|..+.+.|..
T Consensus       248 ~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~-~i~~vf~~v~~~i~~  312 (317)
T cd00066         248 SPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTE-NIRFVFDAVKDIILQ  312 (317)
T ss_pred             CCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchH-HHHHHHHHHHHHHHH
Confidence                        01223333333211          12445678888888 999999999888775

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.55  E-value=4.2e-07  Score=70.98  Aligned_cols=89  Identities=11%  Similarity=0.052  Sum_probs=60.4

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA   90 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak   90 (173)
                      ...+..||++|+|+|..++.+.++  .++.++.     .+.|+|+|.||+|+.+.... ... ..+....+..++.+||+
T Consensus        16 ~~~l~~aDvVl~V~Dar~p~~~~~--~~i~~~l-----~~kp~IiVlNK~DL~~~~~~-~~~-~~~~~~~~~~vi~iSa~   86 (276)
T TIGR03596        16 KEKLKLVDVVIEVLDARIPLSSRN--PMIDEIR-----GNKPRLIVLNKADLADPAVT-KQW-LKYFEEKGIKALAINAK   86 (276)
T ss_pred             HHHHhhCCEEEEEEeCCCCCCCCC--hhHHHHH-----CCCCEEEEEEccccCCHHHH-HHH-HHHHHHcCCeEEEEECC
Confidence            456889999999999987654322  2222222     24799999999998532111 111 11223345678999999


Q ss_pred             CCcccHHHHHHHHHHHHhc
Q psy2792          91 DNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        91 ~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++. |++++.+.+.+.+.+
T Consensus        87 ~~~-gi~~L~~~i~~~~~~  104 (276)
T TIGR03596        87 KGK-GVKKIIKAAKKLLKE  104 (276)
T ss_pred             Ccc-cHHHHHHHHHHHHHH
Confidence            999 999999988887754

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.53  E-value=4.7e-07  Score=68.55  Aligned_cols=66  Identities=17%  Similarity=0.207  Sum_probs=46.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC-CCccCCHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE-HLRQVDESL   72 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~-~~~~v~~~~   72 (173)
                      |||++++  ....+++.+|++|+|||+++..+......| ..+..    .++|+|+|+||+|+. .+..++.++
T Consensus        80 TPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l-~~~~~----~~~p~ilviNKiD~~~~e~~~~~~~  148 (222)
T cd01885          80 SPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVL-RQALK----ERVKPVLVINKIDRLILELKLSPEE  148 (222)
T ss_pred             CCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHH-HHHHH----cCCCEEEEEECCCcchhhhcCCHHH
Confidence            8999885  677889999999999999986555432222 22222    358999999999975 233344443

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PRK01889 GTPase RsgA; Reviewed

Probab=98.53  E-value=5.1e-07  Score=72.97  Aligned_cols=83  Identities=17%  Similarity=0.033  Sum_probs=59.2

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-hcCCeEEEEcccCC
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV-KYNCTFHEVSVADN   92 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-~~~~~~~e~Sak~g   92 (173)
                      ..|+|.+++|+++...-+...++.++..+..    .+++.+||.||+||.+..   .+....+.. ..++.++.+|++++
T Consensus       110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~----~~i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g  182 (356)
T PRK01889        110 AANVDTVFIVCSLNHDFNLRRIERYLALAWE----SGAEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDG  182 (356)
T ss_pred             EEeCCEEEEEEecCCCCChhHHHHHHHHHHH----cCCCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCC
Confidence            6899999999999644344556666665555    457889999999996431   111222222 34678999999999


Q ss_pred             cccHHHHHHHHH
Q psy2792          93 SPAIYQAFDHLL  104 (173)
Q Consensus        93 ~~~v~~lf~~l~  104 (173)
                      . |+++|..+|.
T Consensus       183 ~-gl~~L~~~L~  193 (356)
T PRK01889        183 E-GLDVLAAWLS  193 (356)
T ss_pred             c-cHHHHHHHhh
Confidence            9 9999888774

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=98.53  E-value=4.6e-07  Score=64.23  Aligned_cols=90  Identities=8%  Similarity=-0.010  Sum_probs=57.0

Q ss_pred             cHhhhcc---cCcEEEEEEeCCChhh--HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhh--h
Q psy2792           9 TLTAMIC---WADGCIIVYSLIDKES--FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAV--K   79 (173)
Q Consensus         9 ~~~~y~~---~ad~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~--~   79 (173)
                      +...|+.   +++++++++|.++..+  ...+..|+..       .+.|+++|+||+|+.......  ........+  .
T Consensus        71 ~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~-------~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~  143 (170)
T cd01876          71 LIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEE-------LGIPFLVVLTKADKLKKSELAKALKEIKKELKLFE  143 (170)
T ss_pred             HHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHH-------cCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhcc
Confidence            3344554   4578999999986532  2223344432       248999999999985322111  111222222  2


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      ....++++||+++. ++.+++++|.+.
T Consensus       144 ~~~~~~~~Sa~~~~-~~~~l~~~l~~~  169 (170)
T cd01876         144 IDPPIILFSSLKGQ-GIDELRALIEKW  169 (170)
T ss_pred             CCCceEEEecCCCC-CHHHHHHHHHHh
Confidence            34678999999999 999999999864

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=98.52  E-value=3.9e-07  Score=64.06  Aligned_cols=80  Identities=20%  Similarity=0.165  Sum_probs=59.3

Q ss_pred             cccCcEEEEEEeCCChhh-HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCe-EEEEcccC
Q psy2792          14 ICWADGCIIVYSLIDKES-FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCT-FHEVSVAD   91 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s-~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~   91 (173)
                      -.+||+|++|.|.+++.+ |.      ..+...   -+.|+|=|.||+|+... ....+.+..+.+..|+. .|++|+.+
T Consensus        61 a~dad~V~ll~dat~~~~~~p------P~fa~~---f~~pvIGVITK~Dl~~~-~~~i~~a~~~L~~aG~~~if~vS~~~  130 (143)
T PF10662_consen   61 AQDADVVLLLQDATEPRSVFP------PGFASM---FNKPVIGVITKIDLPSD-DANIERAKKWLKNAGVKEIFEVSAVT  130 (143)
T ss_pred             HhhCCEEEEEecCCCCCccCC------chhhcc---cCCCEEEEEECccCccc-hhhHHHHHHHHHHcCCCCeEEEECCC
Confidence            448999999999998753 21      112221   34799999999999732 22456677777777765 79999999


Q ss_pred             CcccHHHHHHHHH
Q psy2792          92 NSPAIYQAFDHLL  104 (173)
Q Consensus        92 g~~~v~~lf~~l~  104 (173)
                      |+ ||++|.++|-
T Consensus       131 ~e-Gi~eL~~~L~  142 (143)
T PF10662_consen  131 GE-GIEELKDYLE  142 (143)
T ss_pred             Cc-CHHHHHHHHh
Confidence            99 9999998874

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00101 ureG urease accessory protein UreG

Probab=98.51  E-value=4.6e-07  Score=67.46  Aligned_cols=80  Identities=18%  Similarity=0.153  Sum_probs=53.4

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE--EEEEeCCCCCCCccCCHHHHHHHhhh--cCCeEEEEcccCC
Q psy2792          17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV--MLLANKLDLEHLRQVDESLGRSTAVK--YNCTFHEVSVADN   92 (173)
Q Consensus        17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi--ilv~NK~Dl~~~~~v~~~~~~~~~~~--~~~~~~e~Sak~g   92 (173)
                      +|.+|.|+|+++.++...  .+.         ..+..  ++|+||+|+.+......+...+....  .+.+++++||++|
T Consensus       113 ~~~~i~vvD~~~~~~~~~--~~~---------~qi~~ad~~~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g  181 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPR--KGG---------PGITRSDLLVINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTK  181 (199)
T ss_pred             hCcEEEEEEcchhhhhhh--hhH---------hHhhhccEEEEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            688999999987554221  111         12334  78999999974212222333333333  3577999999999


Q ss_pred             cccHHHHHHHHHHHHh
Q psy2792          93 SPAIYQAFDHLLTESR  108 (173)
Q Consensus        93 ~~~v~~lf~~l~~~i~  108 (173)
                      . |++++|++|.+.+.
T Consensus       182 ~-gi~el~~~i~~~~~  196 (199)
T TIGR00101       182 E-GLDTVIDWIEHYAL  196 (199)
T ss_pred             C-CHHHHHHHHHhhcC
Confidence            9 99999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>PRK12736 elongation factor Tu; Reviewed

Probab=98.50  E-value=5.2e-07  Score=73.87  Aligned_cols=102  Identities=19%  Similarity=0.141  Sum_probs=61.3

Q ss_pred             CCCCCCccHhh--hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792           2 TIGLTEGTLTA--MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS   75 (173)
Q Consensus         2 TaG~e~~~~~~--y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~   75 (173)
                      |||.++++...  -+..+|++++|+|.++... .....++..+..    .++| +|+|.||+|+.+..+..   .++...
T Consensus        82 tPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~-~~t~~~~~~~~~----~g~~~~IvviNK~D~~~~~~~~~~i~~~i~~  156 (394)
T PRK12736         82 CPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLARQ----VGVPYLVVFLNKVDLVDDEELLELVEMEVRE  156 (394)
T ss_pred             CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCEEEEEEEecCCcchHHHHHHHHHHHHH
Confidence            78887653222  2457899999999986311 111222233333    3477 67899999986432221   123344


Q ss_pred             HhhhcC-----CeEEEEcccCCcc-------cHHHHHHHHHHHHh
Q psy2792          76 TAVKYN-----CTFHEVSVADNSP-------AIYQAFDHLLTESR  108 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g~~-------~v~~lf~~l~~~i~  108 (173)
                      +....+     ++++.+||++|..       ++..+++.|...+.
T Consensus       157 ~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        157 LLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             HHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            444444     4689999999820       46777777776654

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=98.47  E-value=1.4e-06  Score=71.53  Aligned_cols=102  Identities=15%  Similarity=0.155  Sum_probs=69.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|.-++  =...-+.-|.++|+|+|.+.--.-+.+.+.+--+.     .+..+|-|.||+||+....  +....+...-
T Consensus        83 TPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle-----~~LeIiPViNKIDLP~Adp--ervk~eIe~~  155 (603)
T COG0481          83 TPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE-----NNLEIIPVLNKIDLPAADP--ERVKQEIEDI  155 (603)
T ss_pred             CCCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHH-----cCcEEEEeeecccCCCCCH--HHHHHHHHHH
Confidence            7888774  22334678999999999987422233333333332     4678999999999985321  2233344444


Q ss_pred             cCCe---EEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          80 YNCT---FHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        80 ~~~~---~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .|+.   .+.+|||+|. ||+++++.|++.+....
T Consensus       156 iGid~~dav~~SAKtG~-gI~~iLe~Iv~~iP~P~  189 (603)
T COG0481         156 IGIDASDAVLVSAKTGI-GIEDVLEAIVEKIPPPK  189 (603)
T ss_pred             hCCCcchheeEecccCC-CHHHHHHHHHhhCCCCC
Confidence            5543   7899999999 99999999999887633

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=98.46  E-value=8.3e-07  Score=70.13  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=67.7

Q ss_pred             cccCcEEEEEEeCCChh---hHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE-Ec
Q psy2792          14 ICWADGCIIVYSLIDKE---SFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE-VS   88 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~---s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e-~S   88 (173)
                      +..|.++++|+|++..+   ..++......++..+.. -.+.|.+||+||+|+....+-.......+.+..++..+. +|
T Consensus       235 IERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~IS  314 (369)
T COG0536         235 IERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLIS  314 (369)
T ss_pred             HHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeee
Confidence            55789999999998654   36666666677776642 257899999999996543322222333444444544222 99


Q ss_pred             ccCCcccHHHHHHHHHHHHhcCC
Q psy2792          89 VADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      |.++. |++++...+.+.+.+..
T Consensus       315 a~t~~-g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         315 ALTRE-GLDELLRALAELLEETK  336 (369)
T ss_pred             hhccc-CHHHHHHHHHHHHHHhh
Confidence            99999 99999999988877654

>cd01884 EF_Tu EF-Tu subfamily

Probab=98.45  E-value=1.3e-06  Score=64.86  Aligned_cols=89  Identities=20%  Similarity=0.151  Sum_probs=54.4

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS   75 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~   75 (173)
                      |+|..+++  ...-+..+|++++|+|.+..-. ......+..+..    .++| +|+|.||+|+....+..   .++...
T Consensus        72 tPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~-~~~~~~~~~~~~----~~~~~iIvviNK~D~~~~~~~~~~~~~~i~~  146 (195)
T cd01884          72 CPGHADYIKNMITGAAQMDGAILVVSATDGPM-PQTREHLLLARQ----VGVPYIVVFLNKADMVDDEELLELVEMEVRE  146 (195)
T ss_pred             CcCHHHHHHHHHHHhhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCcEEEEEeCCCCCCcHHHHHHHHHHHHH
Confidence            67776642  3344778999999999976321 112223333433    3466 78999999985322211   123334


Q ss_pred             HhhhcC-----CeEEEEcccCCcccH
Q psy2792          76 TAVKYN-----CTFHEVSVADNSPAI   96 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g~~~v   96 (173)
                      +....+     ++++.+||++|. |+
T Consensus       147 ~l~~~g~~~~~v~iipiSa~~g~-n~  171 (195)
T cd01884         147 LLSKYGFDGDNTPIVRGSALKAL-EG  171 (195)
T ss_pred             HHHHhcccccCCeEEEeeCcccc-CC
Confidence            444433     569999999999 75

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=98.44  E-value=1.4e-06  Score=72.52  Aligned_cols=104  Identities=14%  Similarity=0.037  Sum_probs=62.8

Q ss_pred             CCCCCCccHh--hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792           2 TIGLTEGTLT--AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~~~~--~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~   77 (173)
                      |+|.++++..  .-+..+|++++|+|.++...-.+....+..+.. .  .-.++|+|.||+|+.+...+.  .++...+.
T Consensus       124 tPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-l--gi~~iIVvlNKiDlv~~~~~~~~~~ei~~~l  200 (460)
T PTZ00327        124 CPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-M--KLKHIIILQNKIDLVKEAQAQDQYEEIRNFV  200 (460)
T ss_pred             CCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-c--CCCcEEEEEecccccCHHHHHHHHHHHHHHH
Confidence            5676654332  336689999999999863111111122222222 1  224689999999986422111  12222222


Q ss_pred             hh---cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VK---YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..   .+.+++.+||++|. |++.|++.|.+.+..
T Consensus       201 ~~~~~~~~~iipVSA~~G~-nI~~Ll~~L~~~lp~  234 (460)
T PTZ00327        201 KGTIADNAPIIPISAQLKY-NIDVVLEYICTQIPI  234 (460)
T ss_pred             HhhccCCCeEEEeeCCCCC-CHHHHHHHHHhhCCC
Confidence            22   35679999999999 999999999875543

>KOG0077|consensus

Probab=98.44  E-value=4.7e-07  Score=64.55  Aligned_cols=95  Identities=19%  Similarity=0.225  Sum_probs=70.1

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH------hhh---
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST------AVK---   79 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~------~~~---   79 (173)
                      .+..||-.+|++++.+|+.|.+.|.+....++.+........+|+++.+||+|.+..  +++++....      +..   
T Consensus        80 ~wkdyf~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a--~se~~l~~~l~l~~~t~~~~~  157 (193)
T KOG0077|consen   80 VWKDYFPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYA--ASEDELRFHLGLSNFTTGKGK  157 (193)
T ss_pred             HHHHHHhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCc--ccHHHHHHHHHHHHHhccccc
Confidence            678899999999999999999999988887777665544478999999999998743  344443221      111   


Q ss_pred             -----cC---CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 -----YN---CTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 -----~~---~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                           .+   +..|.||...+. +.-+.|.|+...
T Consensus       158 v~~~~~~~rp~evfmcsi~~~~-gy~e~fkwl~qy  191 (193)
T KOG0077|consen  158 VNLTDSNVRPLEVFMCSIVRKM-GYGEGFKWLSQY  191 (193)
T ss_pred             ccccCCCCCeEEEEEEEEEccC-ccceeeeehhhh
Confidence                 01   346888888888 777888877653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.42  E-value=1.1e-06  Score=69.04  Aligned_cols=89  Identities=12%  Similarity=0.036  Sum_probs=60.5

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA   90 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak   90 (173)
                      ...+..||++|+|+|..++.+.+.  .++.++.     .+.|+++|.||+|+.+...  .+....+....+..++.+||+
T Consensus        19 ~~~l~~aDvIL~VvDar~p~~~~~--~~l~~~~-----~~kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~   89 (287)
T PRK09563         19 KENLKLVDVVIEVLDARIPLSSEN--PMIDKII-----GNKPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAK   89 (287)
T ss_pred             HHHhhhCCEEEEEEECCCCCCCCC--hhHHHHh-----CCCCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECC
Confidence            456889999999999987654322  2232222     2579999999999853211  111122223345678999999


Q ss_pred             CCcccHHHHHHHHHHHHhc
Q psy2792          91 DNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        91 ~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++. |++++...+...+.+
T Consensus        90 ~~~-gi~~L~~~l~~~l~~  107 (287)
T PRK09563         90 KGQ-GVKKILKAAKKLLKE  107 (287)
T ss_pred             Ccc-cHHHHHHHHHHHHHH
Confidence            999 999999988877654

>smart00275 G_alpha G protein alpha subunit

Probab=98.41  E-value=4.5e-06  Score=67.13  Aligned_cols=106  Identities=15%  Similarity=0.102  Sum_probs=71.7

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC-----
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL-----   65 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----   65 (173)
                      +||..  .+|.+||.+++++|||+|+++.          ..+++....++.+.....-.++|++|++||.|+..+     
T Consensus       192 gGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~~Kl~~~  271 (342)
T smart00275      192 GGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFEEKIKKV  271 (342)
T ss_pred             CCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHHHHhCCC
Confidence            56654  4899999999999999999973          345555555566655433367999999999997321     


Q ss_pred             ----------ccCCHHHHHHHhh-----h------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          66 ----------RQVDESLGRSTAV-----K------YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        66 ----------~~v~~~~~~~~~~-----~------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                ...+.+.+..+..     .      ..+.++.++|.+-. ++..+|+.+...|..
T Consensus       272 ~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~-~~~~v~~~v~~~I~~  335 (342)
T smart00275      272 PLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTR-NIRVVFDAVKDIILQ  335 (342)
T ss_pred             chhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccH-HHHHHHHHHHHHHHH
Confidence                      0012233333221     1      12345678888888 999999998887765

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=98.39  E-value=1.8e-06  Score=73.09  Aligned_cols=57  Identities=16%  Similarity=0.190  Sum_probs=41.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |||++++  ....+++.+|++|+|+|.++.-. .....++.....    .++|+++++||+|+.
T Consensus        86 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~-~~t~~l~~~~~~----~~iPiiv~iNK~D~~  144 (526)
T PRK00741         86 TPGHEDFSEDTYRTLTAVDSALMVIDAAKGVE-PQTRKLMEVCRL----RDTPIFTFINKLDRD  144 (526)
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEecCCCCC-HHHHHHHHHHHh----cCCCEEEEEECCccc
Confidence            8999875  45678999999999999987421 122333333322    569999999999974

>TIGR00485 EF-Tu translation elongation factor TU

Probab=98.38  E-value=9.7e-07  Score=72.29  Aligned_cols=84  Identities=19%  Similarity=0.171  Sum_probs=51.9

Q ss_pred             CCCCCCccHhh--hcccCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCC---HHH
Q psy2792           2 TIGLTEGTLTA--MICWADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVD---ESL   72 (173)
Q Consensus         2 TaG~e~~~~~~--y~~~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~---~~~   72 (173)
                      |||+++++...  -..++|++++|+|+++.   ++++    .+..+..    .++|.+ +|.||+|+.+..+..   .++
T Consensus        82 tpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e----~l~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~~~~~  153 (394)
T TIGR00485        82 CPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTRE----HILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEME  153 (394)
T ss_pred             CCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH----HHHHHHH----cCCCEEEEEEEecccCCHHHHHHHHHHH
Confidence            88997753222  24467999999999873   3332    2222333    246754 689999986432211   123


Q ss_pred             HHHHhhhcC-----CeEEEEcccCCc
Q psy2792          73 GRSTAVKYN-----CTFHEVSVADNS   93 (173)
Q Consensus        73 ~~~~~~~~~-----~~~~e~Sak~g~   93 (173)
                      ...++...+     ++++.+||++|.
T Consensus       154 i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       154 VRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHhcCCCccCccEEECcccccc
Confidence            455555554     679999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK13351 elongation factor G; Reviewed

Probab=98.36  E-value=2.9e-06  Score=74.12  Aligned_cols=58  Identities=17%  Similarity=0.238  Sum_probs=45.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|+.++  .+..+++.+|++|+|+|.++...+.....|. .+..    .++|+++|+||+|+..
T Consensus        80 tPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~-~~~~----~~~p~iiviNK~D~~~  139 (687)
T PRK13351         80 TPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWR-QADR----YGIPRLIFINKMDRVG  139 (687)
T ss_pred             CCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHh----cCCCEEEEEECCCCCC
Confidence            8999874  6788999999999999999876666555553 3333    4689999999999853

>KOG1423|consensus

Probab=98.31  E-value=3.3e-06  Score=65.97  Aligned_cols=102  Identities=17%  Similarity=0.123  Sum_probs=68.2

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc-------------cCC---HHHHHH
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR-------------QVD---ESLGRS   75 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-------------~v~---~~~~~~   75 (173)
                      ..+.+||++++|+|+++....-+ ...+..+..+   .++|-|||.||+|....+             +++   .+....
T Consensus       151 ~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~y---s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~  226 (379)
T KOG1423|consen  151 DAAQNADCVVVVVDASATRTPLH-PRVLHMLEEY---SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEK  226 (379)
T ss_pred             HHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHH---hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHH
Confidence            34678999999999997432211 2234445554   469999999999974321             111   111111


Q ss_pred             Hhh---------hcCC----eEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcccc
Q psy2792          76 TAV---------KYNC----TFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKI  118 (173)
Q Consensus        76 ~~~---------~~~~----~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~~  118 (173)
                      +..         ..|+    .+|.+||++|. ||+++-++|..++..+++.++...
T Consensus       227 f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~-GikdlkqyLmsqa~~gpW~y~a~i  281 (379)
T KOG1423|consen  227 FTDVPSDEKWRTICGWSHFERVFMVSALYGE-GIKDLKQYLMSQAPPGPWKYPADI  281 (379)
T ss_pred             hccCCcccccccccCcccceeEEEEeccccc-CHHHHHHHHHhcCCCCCCCCCccc
Confidence            211         1122    38999999999 999999999999999998886543

>PRK12735 elongation factor Tu; Reviewed

Probab=98.31  E-value=2.7e-06  Score=69.78  Aligned_cols=102  Identities=19%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             CCCCCCccH--hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCC---HHHHHH
Q psy2792           2 TIGLTEGTL--TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVD---ESLGRS   75 (173)
Q Consensus         2 TaG~e~~~~--~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~---~~~~~~   75 (173)
                      |||.++++.  ..-+.++|++++|+|+.+... .....++..+..    .++|.+ +|.||+|+.+..+..   ..+...
T Consensus        82 tPGh~~f~~~~~~~~~~aD~~llVvda~~g~~-~qt~e~l~~~~~----~gi~~iivvvNK~Dl~~~~~~~~~~~~ei~~  156 (396)
T PRK12735         82 CPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRE  156 (396)
T ss_pred             CCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEecCCcchHHHHHHHHHHHHH
Confidence            788866422  233667899999999987321 222233333333    347855 579999986422111   123444


Q ss_pred             HhhhcC-----CeEEEEcccCCc---------ccHHHHHHHHHHHHh
Q psy2792          76 TAVKYN-----CTFHEVSVADNS---------PAIYQAFDHLLTESR  108 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g~---------~~v~~lf~~l~~~i~  108 (173)
                      +...++     ++++.+||++|.         .++..|++.|...+.
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             HHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            454443     568999999984         156777777766543

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.29  E-value=6.1e-06  Score=64.61  Aligned_cols=93  Identities=16%  Similarity=0.123  Sum_probs=68.5

Q ss_pred             cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV   87 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~   87 (173)
                      +.+--+.+.|-+|+|+++.+|+ +...+..++-.+..    .++..|||.||+||.+......++........|+..+.+
T Consensus        72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~----~gi~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~  147 (301)
T COG1162          72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEA----GGIEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFV  147 (301)
T ss_pred             eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHH----cCCcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEe
Confidence            4444556788899999999986 56666666554443    568888899999997644332234555667789999999


Q ss_pred             cccCCcccHHHHHHHHHHH
Q psy2792          88 SVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~~  106 (173)
                      |++++. +++++...+...
T Consensus       148 s~~~~~-~~~~l~~~l~~~  165 (301)
T COG1162         148 SAKNGD-GLEELAELLAGK  165 (301)
T ss_pred             cCcCcc-cHHHHHHHhcCC
Confidence            999999 999998877654

>cd01899 Ygr210 Ygr210 subfamily

Probab=98.28  E-value=5.7e-06  Score=65.89  Aligned_cols=60  Identities=20%  Similarity=0.213  Sum_probs=42.6

Q ss_pred             CCcEEEEEeCCCCCCCccCCHHHHHHHhhhc-CCeEEEEcccCCcccHHHHHH-HHHHHHhcCCCCC
Q psy2792          50 NVPVMLLANKLDLEHLRQVDESLGRSTAVKY-NCTFHEVSVADNSPAIYQAFD-HLLTESRGGPPSG  114 (173)
Q Consensus        50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sak~g~~~v~~lf~-~l~~~i~~~~~~~  114 (173)
                      ..|+|+|+||+|+.....    ....+.... ...++.+||+.+. +++++.+ .+.+.+.+.+...
T Consensus       214 ~KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~-~L~~L~~~~i~~~lPe~~~f~  275 (318)
T cd01899         214 SKPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAEL-ALRRAAKQGLIKYDPGDSDFE  275 (318)
T ss_pred             CCcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccc-cHHHHHHhhHHHhCCCCCCce
Confidence            469999999999753221    111222222 4568999999999 9999998 6999888766543

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=98.28  E-value=4.4e-06  Score=62.49  Aligned_cols=55  Identities=16%  Similarity=0.156  Sum_probs=40.0

Q ss_pred             CcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          51 VPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        51 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      .|.++|+||+|+.+.......+........  ..+++++||++|. |++++|+++.+.
T Consensus       149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~-gv~~l~~~i~~~  205 (207)
T TIGR00073       149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGE-GLDEWLEFLEGQ  205 (207)
T ss_pred             hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCC-CHHHHHHHHHHh
Confidence            577999999999653222233333333333  3779999999999 999999999864

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>KOG1145|consensus

Probab=98.16  E-value=2.8e-05  Score=65.10  Aligned_cols=93  Identities=14%  Similarity=0.105  Sum_probs=63.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-   75 (173)
                      |+|..-+  |+..=..-+|++++|+..+|   +++.+.+.       ... ..++|+|+..||||.++   .+.+.... 
T Consensus       208 TPGHaAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIk-------hAk-~A~VpiVvAinKiDkp~---a~pekv~~e  276 (683)
T KOG1145|consen  208 TPGHAAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIK-------HAK-SANVPIVVAINKIDKPG---ANPEKVKRE  276 (683)
T ss_pred             CCcHHHHHHHHhccCccccEEEEEEEccCCccHhHHHHHH-------HHH-hcCCCEEEEEeccCCCC---CCHHHHHHH
Confidence            5666543  55555667899999999988   45554332       222 36799999999999763   22333322 


Q ss_pred             H------hhhcC--CeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          76 T------AVKYN--CTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        76 ~------~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      +      .+.+|  ..++++||++|. |++.|-+.+.-.
T Consensus       277 L~~~gi~~E~~GGdVQvipiSAl~g~-nl~~L~eaill~  314 (683)
T KOG1145|consen  277 LLSQGIVVEDLGGDVQVIPISALTGE-NLDLLEEAILLL  314 (683)
T ss_pred             HHHcCccHHHcCCceeEEEeecccCC-ChHHHHHHHHHH
Confidence            2      23444  568999999999 999998877643

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=98.16  E-value=9.2e-06  Score=69.39  Aligned_cols=101  Identities=10%  Similarity=0.032  Sum_probs=73.5

Q ss_pred             CCCCCCc-cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG-TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~-~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+..+|+ ..+.|+.  ..|++|-|.|.++.+.   --..--++.+.    ++|++++.|++|....+-+. -+...+.+
T Consensus        64 ~~~S~DE~Var~~ll~~~~D~ivnVvDAtnLeR---nLyltlQLlE~----g~p~ilaLNm~D~A~~~Gi~-ID~~~L~~  135 (653)
T COG0370          64 TAYSEDEKVARDFLLEGKPDLIVNVVDATNLER---NLYLTLQLLEL----GIPMILALNMIDEAKKRGIR-IDIEKLSK  135 (653)
T ss_pred             CCCCchHHHHHHHHhcCCCCEEEEEcccchHHH---HHHHHHHHHHc----CCCeEEEeccHhhHHhcCCc-ccHHHHHH
Confidence            5555554 7777765  4699999999998642   12222334443    58999999999986554442 34466778


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .+|++++++||++|. |++++...+.+....+.
T Consensus       136 ~LGvPVv~tvA~~g~-G~~~l~~~i~~~~~~~~  167 (653)
T COG0370         136 LLGVPVVPTVAKRGE-GLEELKRAIIELAESKT  167 (653)
T ss_pred             HhCCCEEEEEeecCC-CHHHHHHHHHHhccccc
Confidence            899999999999999 99999999887555433

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=98.16  E-value=4.9e-06  Score=68.44  Aligned_cols=92  Identities=15%  Similarity=0.033  Sum_probs=54.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC----HHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD----ESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~----~~~~~~   75 (173)
                      |||.+++  -...-+..+|++|+|+|......-...+.|. .+...   ...++|+|.||+|+.+...-.    .++...
T Consensus        87 tPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~-~~~~~---~~~~iivviNK~D~~~~~~~~~~~i~~~~~~  162 (406)
T TIGR02034        87 TPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSY-IASLL---GIRHVVLAVNKMDLVDYDEEVFENIKKDYLA  162 (406)
T ss_pred             CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHH-HHHHc---CCCcEEEEEEecccccchHHHHHHHHHHHHH
Confidence            7888774  2233578999999999987542111111121 12221   223588999999986422110    112222


Q ss_pred             HhhhcC---CeEEEEcccCCcccHHH
Q psy2792          76 TAVKYN---CTFHEVSVADNSPAIYQ   98 (173)
Q Consensus        76 ~~~~~~---~~~~e~Sak~g~~~v~~   98 (173)
                      +....+   +.++.+||++|. |+++
T Consensus       163 ~~~~~~~~~~~iipiSA~~g~-ni~~  187 (406)
T TIGR02034       163 FAEQLGFRDVTFIPLSALKGD-NVVS  187 (406)
T ss_pred             HHHHcCCCCccEEEeecccCC-CCcc
Confidence            333333   469999999999 9885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd04169 RF3 RF3 subfamily

Probab=98.15  E-value=1.1e-05  Score=62.77  Aligned_cols=58  Identities=17%  Similarity=0.194  Sum_probs=41.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |||++++  ....+++.+|++|+|+|.++... .....|+.....    .++|+++++||+|+..
T Consensus        78 TPG~~df~~~~~~~l~~aD~~IlVvda~~g~~-~~~~~i~~~~~~----~~~P~iivvNK~D~~~  137 (267)
T cd04169          78 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVE-PQTRKLFEVCRL----RGIPIITFINKLDREG  137 (267)
T ss_pred             CCCchHHHHHHHHHHHHCCEEEEEEECCCCcc-HHHHHHHHHHHh----cCCCEEEEEECCccCC
Confidence            8999874  46678899999999999987432 122333333322    4689999999999854

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>PRK12740 elongation factor G; Reviewed

Probab=98.15  E-value=1.7e-05  Score=69.16  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=42.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |||..+.  .+..++..+|++|+|+|.++.........|. .+..    .++|+++|+||+|+.
T Consensus        67 tPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~-~~~~----~~~p~iiv~NK~D~~  125 (668)
T PRK12740         67 TPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWR-QAEK----YGVPRIIFVNKMDRA  125 (668)
T ss_pred             CCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHH-HHHH----cCCCEEEEEECCCCC
Confidence            7888773  5677899999999999998866555444343 3333    458999999999985

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=98.13  E-value=4.8e-06  Score=69.76  Aligned_cols=93  Identities=13%  Similarity=0.037  Sum_probs=53.8

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH----HHHH
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES----LGRS   75 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~----~~~~   75 (173)
                      |||.+++.  ...-+..+|++|+|+|.+..-.-.....|.  +....  ...++|||.||+|+.+...-..+    +...
T Consensus       114 TPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~--l~~~l--g~~~iIvvvNKiD~~~~~~~~~~~i~~~l~~  189 (474)
T PRK05124        114 TPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSF--IATLL--GIKHLVVAVNKMDLVDYSEEVFERIREDYLT  189 (474)
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHH--HHHHh--CCCceEEEEEeeccccchhHHHHHHHHHHHH
Confidence            78987642  222368999999999987632110111111  12111  12478999999998632211111    1222


Q ss_pred             Hhhhc----CCeEEEEcccCCcccHHHH
Q psy2792          76 TAVKY----NCTFHEVSVADNSPAIYQA   99 (173)
Q Consensus        76 ~~~~~----~~~~~e~Sak~g~~~v~~l   99 (173)
                      +....    ...++.+||++|. |+.++
T Consensus       190 ~~~~~~~~~~~~iipvSA~~g~-ni~~~  216 (474)
T PRK05124        190 FAEQLPGNLDIRFVPLSALEGD-NVVSQ  216 (474)
T ss_pred             HHHhcCCCCCceEEEEEeecCC-Ccccc
Confidence            22332    3679999999999 99764

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=97.99  E-value=1.9e-05  Score=68.53  Aligned_cols=92  Identities=21%  Similarity=0.062  Sum_probs=54.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH----HHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE----SLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~----~~~~~   75 (173)
                      |||.+++  ....-+..+|++|+|+|.++... .........+...   ...++|||.||+|+.+...-..    .+...
T Consensus       111 tPG~~~f~~~~~~~~~~aD~~llVvda~~g~~-~~t~e~~~~~~~~---~~~~iivvvNK~D~~~~~~~~~~~i~~~i~~  186 (632)
T PRK05506        111 TPGHEQYTRNMVTGASTADLAIILVDARKGVL-TQTRRHSFIASLL---GIRHVVLAVNKMDLVDYDQEVFDEIVADYRA  186 (632)
T ss_pred             CCChHHHHHHHHHHHHhCCEEEEEEECCCCcc-ccCHHHHHHHHHh---CCCeEEEEEEecccccchhHHHHHHHHHHHH
Confidence            7888764  22234789999999999975321 1111111122222   2257889999999863111001    12222


Q ss_pred             HhhhcC---CeEEEEcccCCcccHHH
Q psy2792          76 TAVKYN---CTFHEVSVADNSPAIYQ   98 (173)
Q Consensus        76 ~~~~~~---~~~~e~Sak~g~~~v~~   98 (173)
                      +....+   ..++.+||++|. |+.+
T Consensus       187 ~~~~~~~~~~~iipiSA~~g~-ni~~  211 (632)
T PRK05506        187 FAAKLGLHDVTFIPISALKGD-NVVT  211 (632)
T ss_pred             HHHHcCCCCccEEEEecccCC-Cccc
Confidence            334444   358999999999 9874

>CHL00071 tufA elongation factor Tu

Probab=97.98  E-value=3e-05  Score=63.88  Aligned_cols=87  Identities=20%  Similarity=0.144  Sum_probs=53.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~   75 (173)
                      |||..++  -...-+..+|++++|+|....- .......+..+..    .++| +|+|.||+|+.+..+..   .++...
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~----~g~~~iIvvvNK~D~~~~~~~~~~~~~~l~~  156 (409)
T CHL00071         82 CPGHADYVKNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQ----VGVPNIVVFLNKEDQVDDEELLELVELEVRE  156 (409)
T ss_pred             CCChHHHHHHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHH----cCCCEEEEEEEccCCCCHHHHHHHHHHHHHH
Confidence            7887654  2233467899999999997632 1222233333333    3478 77899999986432211   123334


Q ss_pred             HhhhcC-----CeEEEEcccCCc
Q psy2792          76 TAVKYN-----CTFHEVSVADNS   93 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g~   93 (173)
                      +....+     ++++.+||.+|.
T Consensus       157 ~l~~~~~~~~~~~ii~~Sa~~g~  179 (409)
T CHL00071        157 LLSKYDFPGDDIPIVSGSALLAL  179 (409)
T ss_pred             HHHHhCCCCCcceEEEcchhhcc
Confidence            444433     578999999886

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=97.97  E-value=9.7e-06  Score=63.16  Aligned_cols=58  Identities=21%  Similarity=0.284  Sum_probs=40.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|..++  -...+++.+|++|+|+|..+...-. ....+..+..    .++|+++|.||+|+.+
T Consensus        71 TPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~-t~~~~~~~~~----~~~p~ivviNK~D~~~  130 (270)
T cd01886          71 TPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQ-TETVWRQADR----YNVPRIAFVNKMDRTG  130 (270)
T ss_pred             CCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHH-HHHHHHHHHH----cCCCEEEEEECCCCCC
Confidence            7888764  5567899999999999997742211 1223333333    4589999999999864

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.97  E-value=3.7e-05  Score=45.30  Aligned_cols=43  Identities=23%  Similarity=0.391  Sum_probs=29.3

Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792          17 ADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLD   61 (173)
Q Consensus        17 ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~D   61 (173)
                      .++|+|++|++..-  |.++-...+++++..-  .+.|+++|.||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F--~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLF--PNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHT--TTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHc--CCCCEEEEEeccC
Confidence            57899999998753  5666666778888765  6899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=97.92  E-value=9.4e-05  Score=54.83  Aligned_cols=99  Identities=14%  Similarity=0.056  Sum_probs=60.9

Q ss_pred             CCCCCCc--cHhhh-----cccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----C-
Q psy2792           2 TIGLTEG--TLTAM-----ICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----V-   68 (173)
Q Consensus         2 TaG~e~~--~~~~y-----~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----v-   68 (173)
                      |+|..+.  ....|     +.++|++|+|.|-    +|...+ .|+..+...    +.|+++|+||+|+.....    . 
T Consensus        59 tpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~~----~~~~~d~~~~~~l~~~----~~~~ilV~nK~D~~~~~~~~~~~~  130 (197)
T cd04104          59 LPGIGSTAFPPDDYLEEMKFSEYDFFIIISST----RFSSNDVKLAKAIQCM----GKKFYFVRTKVDRDLSNEQRSKPR  130 (197)
T ss_pred             CCCCCcccCCHHHHHHHhCccCcCEEEEEeCC----CCCHHHHHHHHHHHHh----CCCEEEEEecccchhhhhhccccc
Confidence            6777641  22333     6789999998542    344443 466666553    479999999999842111    0 


Q ss_pred             --CHHH----HHHH----hhhcC---CeEEEEccc--CCcccHHHHHHHHHHHHhc
Q psy2792          69 --DESL----GRST----AVKYN---CTFHEVSVA--DNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        69 --~~~~----~~~~----~~~~~---~~~~e~Sak--~g~~~v~~lf~~l~~~i~~  109 (173)
                        ..++    ....    ....+   -.+|-+|+.  .+. ++..+.+.+...+.+
T Consensus       131 ~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~~~~~-~~~~l~~~~~~~l~~  185 (197)
T cd04104         131 SFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFDPSDY-DFPKLRETLLKDLPA  185 (197)
T ss_pred             cccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCChhhc-ChHHHHHHHHHHhhH
Confidence              0111    1111    11212   358999998  578 899999999888876

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>KOG0705|consensus

Probab=97.91  E-value=2.5e-05  Score=65.31  Aligned_cols=101  Identities=15%  Similarity=0.352  Sum_probs=80.1

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC--CCccCCHHHHHHHhhhc-CCeEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE--HLRQVDESLGRSTAVKY-NCTFH   85 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~~-~~~~~   85 (173)
                      ....|..++|++||||.+.|..+|+.+..+...+..+.....+|+++|+.+.-+.  ..+.+.+.++..++.++ .+.||
T Consensus        88 ~~aQft~wvdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~  167 (749)
T KOG0705|consen   88 PDAQFCQWVDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYY  167 (749)
T ss_pred             chhhhhhhccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCcccee
Confidence            4567888999999999999999999998887777766555789999999985543  23455566666655554 48899


Q ss_pred             EEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          86 EVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        86 e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +++|.+|. +++..|+.++..+...
T Consensus       168 et~atyGl-nv~rvf~~~~~k~i~~  191 (749)
T KOG0705|consen  168 ETCATYGL-NVERVFQEVAQKIVQL  191 (749)
T ss_pred             ecchhhhh-hHHHHHHHHHHHHHHH
Confidence            99999999 9999999998777643

>PLN03127 Elongation factor Tu; Provisional

Probab=97.91  E-value=7.2e-05  Score=62.28  Aligned_cols=101  Identities=18%  Similarity=0.117  Sum_probs=58.0

Q ss_pred             CCCCCCccHh--hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCH---HHHHH
Q psy2792           2 TIGLTEGTLT--AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDE---SLGRS   75 (173)
Q Consensus         2 TaG~e~~~~~--~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~---~~~~~   75 (173)
                      |||.++++..  .-+..+|++++|+|.++... .+....+..+..    .++| +|+|.||+|+.+..+...   .+...
T Consensus       131 tPGh~~f~~~~~~g~~~aD~allVVda~~g~~-~qt~e~l~~~~~----~gip~iIvviNKiDlv~~~~~~~~i~~~i~~  205 (447)
T PLN03127        131 CPGHADYVKNMITGAAQMDGGILVVSAPDGPM-PQTKEHILLARQ----VGVPSLVVFLNKVDVVDDEELLELVEMELRE  205 (447)
T ss_pred             CCCccchHHHHHHHHhhCCEEEEEEECCCCCc-hhHHHHHHHHHH----cCCCeEEEEEEeeccCCHHHHHHHHHHHHHH
Confidence            7898775222  23457999999999876321 122222333333    3578 578899999864222111   12222


Q ss_pred             Hhhhc-----CCeEEEEccc---CCccc-------HHHHHHHHHHHHh
Q psy2792          76 TAVKY-----NCTFHEVSVA---DNSPA-------IYQAFDHLLTESR  108 (173)
Q Consensus        76 ~~~~~-----~~~~~e~Sak---~g~~~-------v~~lf~~l~~~i~  108 (173)
                      +....     .++++.+||.   +|. |       +..|++.|...+.
T Consensus       206 ~l~~~~~~~~~vpiip~Sa~sa~~g~-n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        206 LLSFYKFPGDEIPIIRGSALSALQGT-NDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             HHHHhCCCCCcceEEEeccceeecCC-CcccccchHHHHHHHHHHhCC
Confidence            33222     2567888775   454 4       6777777776654

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=97.91  E-value=0.00014  Score=55.38  Aligned_cols=105  Identities=16%  Similarity=0.225  Sum_probs=68.1

Q ss_pred             CCCCCc-------cHhhhcccCcEEEEEEeCCChh---hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--cCC-
Q psy2792           3 IGLTEG-------TLTAMICWADGCIIVYSLIDKE---SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--QVD-   69 (173)
Q Consensus         3 aG~e~~-------~~~~y~~~ad~iilv~d~~~~~---s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~-   69 (173)
                      +||...       .....+++++++|||||+.+.+   .+..+...+..+.++.  +++.+.+...|.|+..+.  ... 
T Consensus        56 pGq~~~~~~~~~~~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~s--p~~~v~vfiHK~D~l~~~~r~~~~  133 (232)
T PF04670_consen   56 PGQDDFMENYFNSQREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYS--PNIKVFVFIHKMDLLSEDEREEIF  133 (232)
T ss_dssp             -SSCSTTHTTHTCCHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHS--TT-EEEEEEE-CCCS-HHHHHHHH
T ss_pred             CCccccccccccccHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhC--CCCeEEEEEeecccCCHHHHHHHH
Confidence            577652       3466799999999999998433   3444455556666665  889999999999985321  111 


Q ss_pred             ---HHHHHHHhhhcC---CeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          70 ---ESLGRSTAVKYN---CTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        70 ---~~~~~~~~~~~~---~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                         .+.....+...+   +.|+.+|.-+ . .+.++|..++..+..+.
T Consensus       134 ~~~~~~i~~~~~~~~~~~~~~~~TSI~D-~-Sly~A~S~Ivq~LiP~~  179 (232)
T PF04670_consen  134 RDIQQRIRDELEDLGIEDITFFLTSIWD-E-SLYEAWSKIVQKLIPNL  179 (232)
T ss_dssp             HHHHHHHHHHHHHTT-TSEEEEEE-TTS-T-HHHHHHHHHHHTTSTTH
T ss_pred             HHHHHHHHHHhhhccccceEEEeccCcC-c-HHHHHHHHHHHHHcccH
Confidence               112233344445   7799999888 4 69999999999887543

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK00049 elongation factor Tu; Reviewed

Probab=97.89  E-value=5.3e-05  Score=62.19  Aligned_cols=101  Identities=19%  Similarity=0.152  Sum_probs=58.7

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCC---HHHHHH
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVD---ESLGRS   75 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~---~~~~~~   75 (173)
                      |||..+++  ...-+..+|++++|+|..+... .....++..+..    .++|.+ ++.||+|+.+..+..   ..+...
T Consensus        82 tPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~-~qt~~~~~~~~~----~g~p~iiVvvNK~D~~~~~~~~~~~~~~i~~  156 (396)
T PRK00049         82 CPGHADYVKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFLNKCDMVDDEELLELVEMEVRE  156 (396)
T ss_pred             CCCHHHHHHHHHhhhccCCEEEEEEECCCCCc-hHHHHHHHHHHH----cCCCEEEEEEeecCCcchHHHHHHHHHHHHH
Confidence            78886642  2234678999999999976421 222333344443    347875 589999986422111   112333


Q ss_pred             Hhhhc-----CCeEEEEcccCCcc---------cHHHHHHHHHHHH
Q psy2792          76 TAVKY-----NCTFHEVSVADNSP---------AIYQAFDHLLTES  107 (173)
Q Consensus        76 ~~~~~-----~~~~~e~Sak~g~~---------~v~~lf~~l~~~i  107 (173)
                      +....     .++++.+||+++..         ++..+++.|...+
T Consensus       157 ~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~  202 (396)
T PRK00049        157 LLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYI  202 (396)
T ss_pred             HHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcC
Confidence            33332     35689999998741         2456666665543

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.88  E-value=2.3e-05  Score=57.43  Aligned_cols=63  Identities=21%  Similarity=0.254  Sum_probs=42.1

Q ss_pred             CCCCCC---ccHhh--hcccCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTE---GTLTA--MICWADGCIIVYSLID-KESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~---~~~~~--y~~~ad~iilv~d~~~-~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~   64 (173)
                      ++|.++   .+...  |..++.+||||.|.+. ...+.++..++..+.....  ...+|++|++||.|+..
T Consensus        56 ~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~  126 (181)
T PF09439_consen   56 IPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFT  126 (181)
T ss_dssp             ETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT
T ss_pred             CCCcHHHHHHHHHhhhchhhCCEEEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccc
Confidence            467766   24444  7889999999999974 4566777666655554332  36799999999999864

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>KOG1707|consensus

Probab=97.87  E-value=4.6e-05  Score=64.04  Aligned_cols=90  Identities=19%  Similarity=0.218  Sum_probs=66.3

Q ss_pred             ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCe-EEEEcccCCc
Q psy2792          15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCT-FHEVSVADNS   93 (173)
Q Consensus        15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-~~e~Sak~g~   93 (173)
                      ..||++.++||.+++.||+.+...+.....   ...+|+++|+.|+|+.+..+...-.-.+++.+++++ .+.+|.++..
T Consensus       494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~---~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~  570 (625)
T KOG1707|consen  494 AACDVACLVYDSSNPRSFEYLAEVYNKYFD---LYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLS  570 (625)
T ss_pred             ceeeeEEEecccCCchHHHHHHHHHHHhhh---ccCCceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCC
Confidence            679999999999999999987664443322   257999999999999754322222227788888876 5677777543


Q ss_pred             ccHHHHHHHHHHHHhc
Q psy2792          94 PAIYQAFDHLLTESRG  109 (173)
Q Consensus        94 ~~v~~lf~~l~~~i~~  109 (173)
                       . .++|..|+....-
T Consensus       571 -s-~~lf~kL~~~A~~  584 (625)
T KOG1707|consen  571 -S-NELFIKLATMAQY  584 (625)
T ss_pred             -C-chHHHHHHHhhhC
Confidence             4 7999999987654

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.87  E-value=6.9e-05  Score=65.64  Aligned_cols=58  Identities=19%  Similarity=0.207  Sum_probs=43.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|+.++  ....+++.+|++|+|+|.++.........| ..+..    .++|+++|+||+|+..
T Consensus        82 TPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~-~~~~~----~~~p~ivviNK~D~~~  141 (689)
T TIGR00484        82 TPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW-RQANR----YEVPRIAFVNKMDKTG  141 (689)
T ss_pred             CCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH-HHHHH----cCCCEEEEEECCCCCC
Confidence            8999874  567789999999999999875444433333 33333    3589999999999874

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK09602 translation-associated GTPase; Reviewed

Probab=97.81  E-value=0.00023  Score=58.39  Aligned_cols=63  Identities=19%  Similarity=0.097  Sum_probs=46.2

Q ss_pred             CCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHH-HHHHHHHHHhcCCCCCccc
Q psy2792          50 NVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQ-AFDHLLTESRGGPPSGIHK  117 (173)
Q Consensus        50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~-lf~~l~~~i~~~~~~~~~~  117 (173)
                      ..|+|+|+||+|+....    +....+....+..++.+||+.+. ++.+ +.+.+++.+.+.++.++..
T Consensus       217 ~KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~-~l~~~l~~~i~~~lp~~p~~~~~d  280 (396)
T PRK09602        217 SKPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAEL-ALRRAAKAGLIDYIPGDSDFEILG  280 (396)
T ss_pred             CCCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhh-hHHHHHHHhHHhhCCCCCccCccc
Confidence            47999999999975311    11222222234568999999999 9999 8899999999888877664

>TIGR00750 lao LAO/AO transport system ATPase

Probab=97.80  E-value=7e-05  Score=59.20  Aligned_cols=86  Identities=15%  Similarity=0.086  Sum_probs=52.0

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH------HHHHhh---hcCCe
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL------GRSTAV---KYNCT   83 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~------~~~~~~---~~~~~   83 (173)
                      .+..+|.++++-+.   ++-+++......+      .++|.++|.||+|+..........      ...+..   .+...
T Consensus       144 i~~~aD~i~vv~~~---~~~~el~~~~~~l------~~~~~ivv~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~  214 (300)
T TIGR00750       144 IANMADTFVVVTIP---GTGDDLQGIKAGL------MEIADIYVVNKADGEGATNVTIARLMLALALEEIRRREDGWRPP  214 (300)
T ss_pred             HHHhhceEEEEecC---CccHHHHHHHHHH------hhhccEEEEEcccccchhHHHHHHHHHHHHHhhccccccCCCCC
Confidence            45667888887443   2334443333333      246779999999986432110000      011111   12235


Q ss_pred             EEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          84 FHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        84 ~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ++.+||+++. |+++++.+|.+.+.
T Consensus       215 v~~iSA~~g~-Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       215 VLTTSAVEGR-GIDELWDAIEEHKT  238 (300)
T ss_pred             EEEEEccCCC-CHHHHHHHHHHHHH
Confidence            8999999999 99999999987643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>KOG3905|consensus

Probab=97.80  E-value=0.00033  Score=55.50  Aligned_cols=61  Identities=21%  Similarity=0.327  Sum_probs=48.2

Q ss_pred             CCcEEEEEeCCCCC----CCccCC-------HHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          50 NVPVMLLANKLDLE----HLRQVD-------ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        50 ~~piilv~NK~Dl~----~~~~v~-------~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .+|++||.+|||..    .+.+..       ......||-.+|...|.+|+|+.. |++-++..|+..++-.+
T Consensus       222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~K-NidllyKYivhr~yG~~  293 (473)
T KOG3905|consen  222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETK-NIDLLYKYIVHRSYGFP  293 (473)
T ss_pred             CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeeccccc-chHHHHHHHHHHhcCcc
Confidence            46999999999972    222221       234567899999999999999999 99999999999887654

>PLN03126 Elongation factor Tu; Provisional

Probab=97.79  E-value=5.5e-05  Score=63.46  Aligned_cols=87  Identities=18%  Similarity=0.090  Sum_probs=52.9

Q ss_pred             CCCCCCccHh--hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792           2 TIGLTEGTLT--AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS   75 (173)
Q Consensus         2 TaG~e~~~~~--~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~   75 (173)
                      |||.++++..  .-+..+|++|+|+|.++... .....++..+..    .++| +|+|.||+|+.+..+..   .++...
T Consensus       151 tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~-~qt~e~~~~~~~----~gi~~iIvvvNK~Dl~~~~~~~~~i~~~i~~  225 (478)
T PLN03126        151 CPGHADYVKNMITGAAQMDGAILVVSGADGPM-PQTKEHILLAKQ----VGVPNMVVFLNKQDQVDDEELLELVELEVRE  225 (478)
T ss_pred             CCCHHHHHHHHHHHHhhCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCeEEEEEecccccCHHHHHHHHHHHHHH
Confidence            6788765333  23567899999999886422 222333344443    3477 78899999986422211   113333


Q ss_pred             Hhhhc-----CCeEEEEcccCCc
Q psy2792          76 TAVKY-----NCTFHEVSVADNS   93 (173)
Q Consensus        76 ~~~~~-----~~~~~e~Sak~g~   93 (173)
                      +....     .++++.+||.+|.
T Consensus       226 ~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        226 LLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHhcCCCcCcceEEEEEccccc
Confidence            44433     4668999999885

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=97.79  E-value=0.0002  Score=57.30  Aligned_cols=96  Identities=10%  Similarity=0.108  Sum_probs=57.1

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhh-
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAV-   78 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~-   78 (173)
                      |+|....-.. ....||.+++|.+....+....+.   ..+.+      +.-++|.||+|+.......  ..+...... 
T Consensus       156 T~Gv~qs~~~-i~~~aD~vlvv~~p~~gd~iq~~k---~gi~E------~aDIiVVNKaDl~~~~~a~~~~~el~~~L~l  225 (332)
T PRK09435        156 TVGVGQSETA-VAGMVDFFLLLQLPGAGDELQGIK---KGIME------LADLIVINKADGDNKTAARRAAAEYRSALRL  225 (332)
T ss_pred             CCCCccchhH-HHHhCCEEEEEecCCchHHHHHHH---hhhhh------hhheEEeehhcccchhHHHHHHHHHHHHHhc
Confidence            6666543111 466799999997644433333222   22333      2237999999986432110  111111111 


Q ss_pred             ------hcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          79 ------KYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        79 ------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                            .+..+++.+||+++. ||+++++.|.+.+.
T Consensus       226 ~~~~~~~w~~pVi~vSA~~g~-GIdeL~~~I~~~~~  260 (332)
T PRK09435        226 LRPKDPGWQPPVLTCSALEGE-GIDEIWQAIEDHRA  260 (332)
T ss_pred             ccccccCCCCCEEEEECCCCC-CHHHHHHHHHHHHH
Confidence                  122468999999999 99999999998765

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=97.74  E-value=8.3e-05  Score=61.95  Aligned_cols=92  Identities=15%  Similarity=0.061  Sum_probs=53.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCC--CccCC-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE---SF---DYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEH--LRQVD-   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~--~~~v~-   69 (173)
                      |+|.+++  -...-+..+|++|+|+|.+...   .|   ......+..+..    -++| +|++.||.|...  ..+-. 
T Consensus        92 tPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~----~gi~~iiv~vNKmD~~~~~~~~~~~  167 (446)
T PTZ00141         92 APGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFT----LGVKQMIVCINKMDDKTVNYSQERY  167 (446)
T ss_pred             CCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHH----cCCCeEEEEEEccccccchhhHHHH
Confidence            7888775  2233477999999999987631   01   112221222322    3466 678999999531  11000 


Q ss_pred             ---HHHHHHHhhhcC-----CeEEEEcccCCcccHHH
Q psy2792          70 ---ESLGRSTAVKYN-----CTFHEVSVADNSPAIYQ   98 (173)
Q Consensus        70 ---~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~   98 (173)
                         .++...+....+     ++++.+||.+|. |+.+
T Consensus       168 ~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~-ni~~  203 (446)
T PTZ00141        168 DEIKKEVSAYLKKVGYNPEKVPFIPISGWQGD-NMIE  203 (446)
T ss_pred             HHHHHHHHHHHHhcCCCcccceEEEeecccCC-Cccc
Confidence               122333333333     568999999999 9864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.73  E-value=0.00012  Score=56.76  Aligned_cols=92  Identities=14%  Similarity=0.114  Sum_probs=56.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|..++  ....+++.+|++|+|+|.++.........|. .+..    .++|+++|+||+|+....  ..+....+...
T Consensus        71 tPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~-~~~~----~~~p~iivvNK~D~~~~~--~~~~~~~l~~~  143 (268)
T cd04170          71 TPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWE-FADE----AGIPRIIFINKMDRERAD--FDKTLAALQEA  143 (268)
T ss_pred             CcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEECCccCCCC--HHHHHHHHHHH
Confidence            6777663  5677899999999999998865443333342 2332    458999999999986431  12223334344


Q ss_pred             cCCe--EEEEcccCCcccHHHHHH
Q psy2792          80 YNCT--FHEVSVADNSPAIYQAFD  101 (173)
Q Consensus        80 ~~~~--~~e~Sak~g~~~v~~lf~  101 (173)
                      ++..  .+.+...++. ++..+.+
T Consensus       144 ~~~~~~~~~ip~~~~~-~~~~~vd  166 (268)
T cd04170         144 FGRPVVPLQLPIGEGD-DFKGVVD  166 (268)
T ss_pred             hCCCeEEEEecccCCC-ceeEEEE
Confidence            4443  3445556655 5444433

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>COG1084 Predicted GTPase [General function prediction only]

Probab=97.72  E-value=0.00019  Score=56.68  Aligned_cols=87  Identities=10%  Similarity=0.197  Sum_probs=60.2

Q ss_pred             CcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC-CeEEEEcccCCc
Q psy2792          17 ADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN-CTFHEVSVADNS   93 (173)
Q Consensus        17 ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~g~   93 (173)
                      +++|+|+||.+..-  +.+.-...++++....   +.|+++|.||+|+.+...+.  ++.......+ .....+++..+.
T Consensus       248 ~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f---~~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~  322 (346)
T COG1084         248 AGVILFLFDPSETCGYSLEEQISLLEEIKELF---KAPIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATKGC  322 (346)
T ss_pred             cCeEEEEEcCccccCCCHHHHHHHHHHHHHhc---CCCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeeehh
Confidence            67899999998753  5666667778888765   38999999999987544332  2222233333 446788888888


Q ss_pred             ccHHHHHHHHHHHHhc
Q psy2792          94 PAIYQAFDHLLTESRG  109 (173)
Q Consensus        94 ~~v~~lf~~l~~~i~~  109 (173)
                       +++.+-..+.....+
T Consensus       323 -~~d~~~~~v~~~a~~  337 (346)
T COG1084         323 -GLDKLREEVRKTALE  337 (346)
T ss_pred             -hHHHHHHHHHHHhhc
Confidence             888777777666444

>TIGR00503 prfC peptide chain release factor 3

Probab=97.72  E-value=7.8e-05  Score=63.30  Aligned_cols=58  Identities=17%  Similarity=0.219  Sum_probs=40.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|+.++  ....+++.+|++|+|+|.++.- ......++.....    .++|+++|+||+|+..
T Consensus        87 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~----~~~PiivviNKiD~~~  146 (527)
T TIGR00503        87 TPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRL----RDTPIFTFMNKLDRDI  146 (527)
T ss_pred             CCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHh----cCCCEEEEEECccccC
Confidence            8999774  4566789999999999998731 1122333333322    4689999999999853

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=97.67  E-value=0.00023  Score=48.76  Aligned_cols=81  Identities=23%  Similarity=0.125  Sum_probs=57.3

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEEcccCC
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEVSVADN   92 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g   92 (173)
                      ..++|++++|-.+++++|.-     -..+..   .-..|+|-|.+|+||.+...  .+....|..+-|. ++|++|+.++
T Consensus        62 ~~dadvi~~v~~and~~s~f-----~p~f~~---~~~k~vIgvVTK~DLaed~d--I~~~~~~L~eaGa~~IF~~s~~d~  131 (148)
T COG4917          62 LQDADVIIYVHAANDPESRF-----PPGFLD---IGVKKVIGVVTKADLAEDAD--ISLVKRWLREAGAEPIFETSAVDN  131 (148)
T ss_pred             hhccceeeeeecccCccccC-----Cccccc---ccccceEEEEecccccchHh--HHHHHHHHHHcCCcceEEEeccCc
Confidence            45789999999998876420     011111   12356999999999975333  3445666666674 4899999999


Q ss_pred             cccHHHHHHHHHH
Q psy2792          93 SPAIYQAFDHLLT  105 (173)
Q Consensus        93 ~~~v~~lf~~l~~  105 (173)
                      . ||++++..|..
T Consensus       132 ~-gv~~l~~~L~~  143 (148)
T COG4917         132 Q-GVEELVDYLAS  143 (148)
T ss_pred             c-cHHHHHHHHHh
Confidence            9 99999998875

>KOG1191|consensus

Probab=97.66  E-value=8.6e-05  Score=61.40  Aligned_cols=106  Identities=22%  Similarity=0.130  Sum_probs=64.5

Q ss_pred             CCCCCC---------c--cHhhhcccCcEEEEEEeC--CChhhHHHHHHHHHHHHhhhC-----CCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTE---------G--TLTAMICWADGCIIVYSL--IDKESFDYAVSTLQNLQRHRA-----VNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~---------~--~~~~y~~~ad~iilv~d~--~~~~s~~~~~~~~~~i~~~~~-----~~~~piilv~NK~Dl~   63 (173)
                      |||.++         +  ....-+..||++++|+|.  ++.++-..+...++....-..     ...-++++|.||+|+.
T Consensus       323 TAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~  402 (531)
T KOG1191|consen  323 TAGIREESNDGIEALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLV  402 (531)
T ss_pred             ccccccccCChhHHHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhcc
Confidence            899887         2  334558899999999999  443333333333333322110     1336899999999986


Q ss_pred             CC-ccCCHHHHHHHhhhcC---C-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          64 HL-RQVDESLGRSTAVKYN---C-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        64 ~~-~~v~~~~~~~~~~~~~---~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .. .+....- ..+....+   . ...++|+++++ ++++|...+.+.+..
T Consensus       403 s~~~~~~~~~-~~~~~~~~~~~~~i~~~vs~~tke-g~~~L~~all~~~~~  451 (531)
T KOG1191|consen  403 SKIPEMTKIP-VVYPSAEGRSVFPIVVEVSCTTKE-GCERLSTALLNIVER  451 (531)
T ss_pred             CccccccCCc-eeccccccCcccceEEEeeechhh-hHHHHHHHHHHHHHH
Confidence            43 1211100 11111111   2 25679999999 999999999887654

>KOG0090|consensus

Probab=97.64  E-value=0.00027  Score=52.67  Aligned_cols=102  Identities=19%  Similarity=0.170  Sum_probs=61.7

Q ss_pred             CCCCC--ccHhhhcc---cCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhh--CCCCCcEEEEEeCCCCCCCc--------
Q psy2792           3 IGLTE--GTLTAMIC---WADGCIIVYSLID-KESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLR--------   66 (173)
Q Consensus         3 aG~e~--~~~~~y~~---~ad~iilv~d~~~-~~s~~~~~~~~~~i~~~~--~~~~~piilv~NK~Dl~~~~--------   66 (173)
                      +|.++  .....|+.   .+-++|||+|..- .....++..++-.+.-..  ....+|++++.||.|+...+        
T Consensus        90 PGH~rlR~kl~e~~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~  169 (238)
T KOG0090|consen   90 PGHSRLRRKLLEYLKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQ  169 (238)
T ss_pred             CCcHHHHHHHHHHccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHH
Confidence            45555  23344555   7999999999754 334555555555544333  13678999999999983211        


Q ss_pred             ------------c----CCHHH----------HHH--H--hhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          67 ------------Q----VDESL----------GRS--T--AVKYNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        67 ------------~----v~~~~----------~~~--~--~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                                  .    +..+.          +..  |  +....+.|.++|++++  +++++-+||.+.
T Consensus       170 LEkEi~~lr~sRsa~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~--~i~~~~~wi~~~  237 (238)
T KOG0090|consen  170 LEKEIHKLRESRSALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG--EIDQWESWIREA  237 (238)
T ss_pred             HHHHHHHHHHHHhhhhccccccccccccccccccccchhhcccceeEEeecccCcC--ChHHHHHHHHHh
Confidence                        0    11100          111  1  1223456889999987  489999998764

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=97.60  E-value=0.00069  Score=53.63  Aligned_cols=51  Identities=16%  Similarity=0.062  Sum_probs=40.1

Q ss_pred             CcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          51 VPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        51 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +|.++|.||+|+..     .++...+.+..  .++.+||+.+. |+++|.+.|.+.+--
T Consensus       240 ~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~-nld~L~e~i~~~L~l  290 (365)
T COG1163         240 KPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGI-NLDELKERIWDVLGL  290 (365)
T ss_pred             eeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCC-CHHHHHHHHHHhhCe
Confidence            59999999999864     34455555443  68999999999 999999999887643

>PRK12739 elongation factor G; Reviewed

Probab=97.59  E-value=0.00046  Score=60.57  Aligned_cols=57  Identities=18%  Similarity=0.270  Sum_probs=39.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|..++  -....++.+|++|+|+|.++.-.-... ..+..+..    .++|+|++.||+|+.
T Consensus        80 TPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~-~i~~~~~~----~~~p~iv~iNK~D~~  138 (691)
T PRK12739         80 TPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE-TVWRQADK----YGVPRIVFVNKMDRI  138 (691)
T ss_pred             CCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECCCCC
Confidence            7787663  455678999999999999875322222 22223333    458999999999986

>KOG1490|consensus

Probab=97.55  E-value=0.00049  Score=57.30  Aligned_cols=90  Identities=12%  Similarity=0.088  Sum_probs=66.4

Q ss_pred             cEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH---HHHHhhhcCCeEEEEcccCC
Q psy2792          18 DGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL---GRSTAVKYNCTFHEVSVADN   92 (173)
Q Consensus        18 d~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~---~~~~~~~~~~~~~e~Sak~g   92 (173)
                      .+|+|+.|++..-  |.+.--..+..|....  .+.|+|+|.||+|+-....++++.   ...+...-++.++++|+.+.
T Consensus       249 aaVLYfmDLSe~CGySva~QvkLfhsIKpLF--aNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~e  326 (620)
T KOG1490|consen  249 SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLF--ANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQE  326 (620)
T ss_pred             hhheeeeechhhhCCCHHHHHHHHHHhHHHh--cCCceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccch
Confidence            3688899998742  5555556677777665  688999999999987666665543   23334444588999999999


Q ss_pred             cccHHHHHHHHHHHHhcC
Q psy2792          93 SPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        93 ~~~v~~lf~~l~~~i~~~  110 (173)
                      + ||-++-...++.++..
T Consensus       327 e-gVm~Vrt~ACe~LLa~  343 (620)
T KOG1490|consen  327 E-GVMDVRTTACEALLAA  343 (620)
T ss_pred             h-ceeeHHHHHHHHHHHH
Confidence            9 9998888888777653

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=97.52  E-value=0.00034  Score=55.97  Aligned_cols=89  Identities=17%  Similarity=0.065  Sum_probs=55.6

Q ss_pred             CCCCCCccHhhh--cccCcEEEEEEeCCChhhHHHHHH--HHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH----HH
Q psy2792           2 TIGLTEGTLTAM--ICWADGCIIVYSLIDKESFDYAVS--TLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES----LG   73 (173)
Q Consensus         2 TaG~e~~~~~~y--~~~ad~iilv~d~~~~~s~~~~~~--~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~----~~   73 (173)
                      |+|.+.+.+...  ...||++|+++|.-. .-+++...  ++..+...     ..++|..||+||.+-.+-..+    +-
T Consensus        93 TPGHeQYTRNMaTGASTadlAIlLVDAR~-Gvl~QTrRHs~I~sLLGI-----rhvvvAVNKmDLvdy~e~~F~~I~~dy  166 (431)
T COG2895          93 TPGHEQYTRNMATGASTADLAILLVDARK-GVLEQTRRHSFIASLLGI-----RHVVVAVNKMDLVDYSEEVFEAIVADY  166 (431)
T ss_pred             CCcHHHHhhhhhcccccccEEEEEEecch-hhHHHhHHHHHHHHHhCC-----cEEEEEEeeecccccCHHHHHHHHHHH
Confidence            778766533332  456999999999842 22332221  33333322     358889999999764332222    23


Q ss_pred             HHHhhhcCC---eEEEEcccCCcccHH
Q psy2792          74 RSTAVKYNC---TFHEVSVADNSPAIY   97 (173)
Q Consensus        74 ~~~~~~~~~---~~~e~Sak~g~~~v~   97 (173)
                      ..|+.++++   .|+.+||..|+ ||-
T Consensus       167 ~~fa~~L~~~~~~~IPiSAl~GD-NV~  192 (431)
T COG2895         167 LAFAAQLGLKDVRFIPISALLGD-NVV  192 (431)
T ss_pred             HHHHHHcCCCcceEEechhccCC-ccc
Confidence            457777774   48999999999 874

>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []

Probab=97.46  E-value=0.00056  Score=56.00  Aligned_cols=104  Identities=16%  Similarity=0.151  Sum_probs=65.8

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-----C
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDKE----------SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-----L   65 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-----~   65 (173)
                      +||..  ..|.+|+.++++||||+++++.+          .+.+....++.+....--.++|+||+.||.|+-.     .
T Consensus       244 GGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~f~~Kl~~~  323 (389)
T PF00503_consen  244 GGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDLFEEKLKKG  323 (389)
T ss_dssp             TSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHHHHHHTTTS
T ss_pred             CCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHHHHHHccCC
Confidence            57754  38999999999999999987532          1333344445555433235799999999999721     0


Q ss_pred             -----------cc--CCHHHHHHHhhh------------cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          66 -----------RQ--VDESLGRSTAVK------------YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        66 -----------~~--v~~~~~~~~~~~------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                                 ..  -+.+.+..+...            ..+.+..++|.+.. ++..+|..+.+.|
T Consensus       324 ~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~-~~~~v~~~v~~~i  389 (389)
T PF00503_consen  324 PKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTE-NIRKVFNAVKDII  389 (389)
T ss_dssp             SCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHH-HHHHHHHHHHHHH
T ss_pred             CchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccH-HHHHHHHHhcCcC
Confidence                       01  123344333211            12345688888888 9999998887653

G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....

>KOG0082|consensus

Probab=97.44  E-value=0.0015  Score=52.46  Aligned_cols=106  Identities=13%  Similarity=0.094  Sum_probs=68.4

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCChhh----------HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC-----
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDKES----------FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL-----   65 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-----   65 (173)
                      .||.-  ..|.+++.++++||||.++++.+-          +.+....++.|.+..--.+.++||..||.||-.+     
T Consensus       203 GGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsiiLFLNK~DLFeEKi~~~  282 (354)
T KOG0082|consen  203 GGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSIILFLNKKDLFEEKIKKV  282 (354)
T ss_pred             CCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEEEEeecHHHHHHHhccC
Confidence            56643  388899999999999999987532          1122334444544433357999999999998321     


Q ss_pred             ---------cc-CCHHHHHHHhh--------hc--CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          66 ---------RQ-VDESLGRSTAV--------KY--NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        66 ---------~~-v~~~~~~~~~~--------~~--~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                               .. -..+++..+..        ..  .+-+..++|.+-. +|+.+|..+.+.|..
T Consensus       283 ~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~-nv~~vf~av~d~Ii~  345 (354)
T KOG0082|consen  283 PLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQ-NVQFVFDAVTDTIIQ  345 (354)
T ss_pred             chhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHH-HHHHHHHHHHHHHHH
Confidence                     11 12333333221        11  2334566787777 999999999988876

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=97.41  E-value=0.00044  Score=54.73  Aligned_cols=87  Identities=11%  Similarity=0.134  Sum_probs=60.3

Q ss_pred             CcEEEEEEeCCCh----hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHHHHhhhc---CCeEEEE
Q psy2792          17 ADGCIIVYSLIDK----ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGRSTAVKY---NCTFHEV   87 (173)
Q Consensus        17 ad~iilv~d~~~~----~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~---~~~~~e~   87 (173)
                      .|++|+|.+.+.+    ++-+++..  -+|..     -..+|+|-||+||......  .++++.+|.+..   +.+.+.+
T Consensus       110 MDgAlLvIaANEpcPQPQT~EHl~A--leIig-----ik~iiIvQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPi  182 (415)
T COG5257         110 MDGALLVIAANEPCPQPQTREHLMA--LEIIG-----IKNIIIVQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPI  182 (415)
T ss_pred             hcceEEEEecCCCCCCCchHHHHHH--Hhhhc-----cceEEEEecccceecHHHHHHHHHHHHHHhcccccCCCceeee
Confidence            4899999998874    44444422  12222     2458999999999753221  244555555432   4679999


Q ss_pred             cccCCcccHHHHHHHHHHHHhcCC
Q psy2792          88 SVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ||..+. |++.+++.|.+.+....
T Consensus       183 SA~~~~-NIDal~e~i~~~IptP~  205 (415)
T COG5257         183 SAQHKA-NIDALIEAIEKYIPTPE  205 (415)
T ss_pred             hhhhcc-CHHHHHHHHHHhCCCCc
Confidence            999999 99999999999887643

>COG0218 Predicted GTPase [General function prediction only]

Probab=97.39  E-value=0.0018  Score=47.95  Aligned_cols=94  Identities=11%  Similarity=0.009  Sum_probs=58.2

Q ss_pred             cHhhhccc---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh----hhcC
Q psy2792           9 TLTAMICW---ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA----VKYN   81 (173)
Q Consensus         9 ~~~~y~~~---ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~----~~~~   81 (173)
                      +...|+.+   -.++++++|+-.+..-.+ ...++-+..    .++|++||+||+|-....+.. ......+    ....
T Consensus        96 ~i~~YL~~R~~L~~vvlliD~r~~~~~~D-~em~~~l~~----~~i~~~vv~tK~DKi~~~~~~-k~l~~v~~~l~~~~~  169 (200)
T COG0218          96 LIEEYLEKRANLKGVVLLIDARHPPKDLD-REMIEFLLE----LGIPVIVVLTKADKLKKSERN-KQLNKVAEELKKPPP  169 (200)
T ss_pred             HHHHHHhhchhheEEEEEEECCCCCcHHH-HHHHHHHHH----cCCCeEEEEEccccCChhHHH-HHHHHHHHHhcCCCC
Confidence            45567654   567888999876532211 123333333    469999999999976533221 1112222    2222


Q ss_pred             Ce--EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          82 CT--FHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        82 ~~--~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..  ++..|+..+. |++++...|.+.+.+
T Consensus       170 ~~~~~~~~ss~~k~-Gi~~l~~~i~~~~~~  198 (200)
T COG0218         170 DDQWVVLFSSLKKK-GIDELKAKILEWLKE  198 (200)
T ss_pred             ccceEEEEeccccc-CHHHHHHHHHHHhhc
Confidence            33  7788999999 999999998877654

>KOG1144|consensus

Probab=97.38  E-value=0.00042  Score=60.10  Aligned_cols=98  Identities=15%  Similarity=0.119  Sum_probs=63.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc----------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR----------   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~----------   66 (173)
                      |+|.|.+  ++...-.-||.+|+|+|+..   +++.+.+.    .++    ..+.|+||..||+|.....          
T Consensus       547 tpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~----lLR----~rktpFivALNKiDRLYgwk~~p~~~i~~  618 (1064)
T KOG1144|consen  547 TPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESIN----LLR----MRKTPFIVALNKIDRLYGWKSCPNAPIVE  618 (1064)
T ss_pred             CCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHH----HHH----hcCCCeEEeehhhhhhcccccCCCchHHH
Confidence            8888775  77777888999999999865   44444332    222    2579999999999963110          


Q ss_pred             -------cCCH-------HHHHHHhhh------------cC--CeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          67 -------QVDE-------SLGRSTAVK------------YN--CTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        67 -------~v~~-------~~~~~~~~~------------~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                             .+..       ....+|++.            .+  +..+.+||.+|+ ||-+|+.+|++...
T Consensus       619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe-GipdLl~llv~ltQ  687 (1064)
T KOG1144|consen  619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE-GIPDLLLLLVQLTQ  687 (1064)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC-CcHHHHHHHHHHHH
Confidence                   0000       001112211            01  345789999999 99999998887554

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=97.28  E-value=0.00048  Score=50.74  Aligned_cols=53  Identities=13%  Similarity=0.134  Sum_probs=41.4

Q ss_pred             EEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          54 MLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        54 ilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ++|.||.||...-..+.+....-+++.  +.+++++|+++|. |+++++.++....
T Consensus       146 llVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~-G~~~~~~~i~~~~  200 (202)
T COG0378         146 LLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGE-GLDEWLRFIEPQA  200 (202)
T ss_pred             EEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCc-CHHHHHHHHHhhc
Confidence            789999999765555556655555554  3789999999999 9999999987643

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.26  E-value=0.00058  Score=52.28  Aligned_cols=100  Identities=16%  Similarity=0.065  Sum_probs=48.1

Q ss_pred             CCCCCCc-cHh-------hhc--ccCcEEEEEEeCCC---hhhHHHHHHHHHHHH-hhhCCCCCcEEEEEeCCCCCCCc-
Q psy2792           2 TIGLTEG-TLT-------AMI--CWADGCIIVYSLID---KESFDYAVSTLQNLQ-RHRAVNNVPVMLLANKLDLEHLR-   66 (173)
Q Consensus         2 TaG~e~~-~~~-------~y~--~~ad~iilv~d~~~---~~s~~~~~~~~~~i~-~~~~~~~~piilv~NK~Dl~~~~-   66 (173)
                      |+||.+. ...       .++  ...-++++++|..-   +..|-  ..++-.+. ...  -+.|.|.|.||+|+.+.. 
T Consensus        98 tPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~--s~~L~s~s~~~~--~~lP~vnvlsK~Dl~~~~~  173 (238)
T PF03029_consen   98 TPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFV--SSLLLSLSIMLR--LELPHVNVLSKIDLLSKYL  173 (238)
T ss_dssp             --SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHH--HHHHHHHHHHHH--HTSEEEEEE--GGGS-HHH
T ss_pred             CCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHH--HHHHHHHHHHhh--CCCCEEEeeeccCcccchh
Confidence            8999882 111       122  24557888999753   33342  22222211 111  369999999999997511 


Q ss_pred             -c----------C-------CH---HHHHHHhhhcC-C-eEEEEcccCCcccHHHHHHHHHHH
Q psy2792          67 -Q----------V-------DE---SLGRSTAVKYN-C-TFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        67 -~----------v-------~~---~~~~~~~~~~~-~-~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                       .          .       ..   +....+....+ . .++.+|+++++ ++++++..+-+.
T Consensus       174 ~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~-~~~~L~~~id~a  235 (238)
T PF03029_consen  174 EFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGE-GMEELLAAIDKA  235 (238)
T ss_dssp             HHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTT-THHHHHHHHHHH
T ss_pred             HHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChH-HHHHHHHHHHHH
Confidence             0          0       00   01111122233 3 69999999999 999999877543

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=97.23  E-value=0.00066  Score=49.39  Aligned_cols=44  Identities=20%  Similarity=0.159  Sum_probs=28.0

Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792          18 DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus        18 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |++++|.|+.++.+..+ ..+.+.+. .. ..+.|+|+|.||+|+.+
T Consensus         1 DvVl~VvDar~p~~~~~-~~i~~~~~-l~-~~~kp~IlVlNK~DL~~   44 (172)
T cd04178           1 DVILEVLDARDPLGCRC-PQVEEAVL-QA-GGNKKLVLVLNKIDLVP   44 (172)
T ss_pred             CEEEEEEECCCCCCCCC-HHHHHHHH-hc-cCCCCEEEEEehhhcCC
Confidence            79999999988643211 12222221 11 13589999999999954

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=97.20  E-value=0.0037  Score=52.42  Aligned_cols=62  Identities=18%  Similarity=0.242  Sum_probs=47.4

Q ss_pred             CcEEEEEeCCCCCC----CccC-------CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          51 VPVMLLANKLDLEH----LRQV-------DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        51 ~piilv~NK~Dl~~----~~~v-------~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      +|++||.+|+|...    +...       -.+..+.+|-.+|...|.||++... |++-|+..|...++..+..
T Consensus       197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~-n~~~L~~yi~h~l~~~~f~  269 (472)
T PF05783_consen  197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEK-NLDLLYKYILHRLYGFPFK  269 (472)
T ss_pred             cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccc-cHHHHHHHHHHHhccCCCC
Confidence            79999999999631    1111       1223566788999999999999999 9999999999888775543

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=97.17  E-value=0.00073  Score=53.04  Aligned_cols=55  Identities=20%  Similarity=0.175  Sum_probs=38.3

Q ss_pred             CcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          51 VPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        51 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      ..-++|.||+||........+.........  ...++.+||++|. |++++++||...
T Consensus       231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGe-Gld~L~~~L~~~  287 (290)
T PRK10463        231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGE-GMDQWLNWLETQ  287 (290)
T ss_pred             cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCC-CHHHHHHHHHHh
Confidence            567899999999642211222233333332  4779999999999 999999999764

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=97.11  E-value=0.012  Score=43.34  Aligned_cols=93  Identities=8%  Similarity=-0.029  Sum_probs=55.8

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCC------HHHHHHHhhhcCCeEEE
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVD------ESLGRSTAVKYNCTFHE   86 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~------~~~~~~~~~~~~~~~~e   86 (173)
                      ..+.|++|+|.|+.+. +-+ ....++.+.+..+. .-.++++|.|+.|......+.      ......+.+..+-.|+.
T Consensus        81 ~~g~~~illVi~~~~~-t~~-d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~  158 (196)
T cd01852          81 APGPHAFLLVVPLGRF-TEE-EEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVA  158 (196)
T ss_pred             CCCCEEEEEEEECCCc-CHH-HHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEE
Confidence            4678999999998862 211 12233444443211 124788999999864322111      12334444555545544


Q ss_pred             Ec-----ccCCcccHHHHHHHHHHHHhc
Q psy2792          87 VS-----VADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        87 ~S-----ak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+     +..+. +|.+|++.|.+.+.+
T Consensus       159 f~~~~~~~~~~~-q~~~Ll~~i~~~~~~  185 (196)
T cd01852         159 FNNKAKGEEQEQ-QVKELLAKVESMVKE  185 (196)
T ss_pred             EeCCCCcchhHH-HHHHHHHHHHHHHHh
Confidence            43     45677 999999999998887

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=97.09  E-value=0.0048  Score=51.26  Aligned_cols=105  Identities=11%  Similarity=0.133  Sum_probs=68.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHHHh-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRSTA-   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~-   77 (173)
                      |+|..++  =.+..+.-+|++++++|..+- ...+.+.-+.....    .+.+-|+|.||+|.+..+.-. -++...+. 
T Consensus        75 TPGHADFGGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~----~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~  149 (603)
T COG1217          75 TPGHADFGGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALA----LGLKPIVVINKIDRPDARPDEVVDEVFDLFV  149 (603)
T ss_pred             CCCcCCccchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHH----cCCCcEEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence            8888883  556678889999999998762 12222333344444    347778899999987654210 11222222 


Q ss_pred             ------hhcCCeEEEEcccCCcc---------cHHHHHHHHHHHHhcCC
Q psy2792          78 ------VKYNCTFHEVSVADNSP---------AIYQAFDHLLTESRGGP  111 (173)
Q Consensus        78 ------~~~~~~~~e~Sak~g~~---------~v~~lf~~l~~~i~~~~  111 (173)
                            .+++++++..||..|..         ++.-||+.|++.+....
T Consensus       150 ~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~  198 (603)
T COG1217         150 ELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK  198 (603)
T ss_pred             HhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence                  24567788899987632         67789999998887644

>KOG1532|consensus

Probab=97.00  E-value=0.0064  Score=47.39  Aligned_cols=103  Identities=13%  Similarity=0.063  Sum_probs=60.0

Q ss_pred             CCCCCC-------c--cHhhhcc-cCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC
Q psy2792           2 TIGLTE-------G--TLTAMIC-WADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV   68 (173)
Q Consensus         2 TaG~e~-------~--~~~~y~~-~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v   68 (173)
                      |+||-+       |  ++..+-. .--++++|+|...   +.+|-.-.-+--.|.-   ....|+|+|.||+|+.+..- 
T Consensus       123 TPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSily---ktklp~ivvfNK~Dv~d~~f-  198 (366)
T KOG1532|consen  123 TPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILY---KTKLPFIVVFNKTDVSDSEF-  198 (366)
T ss_pred             CCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHH---hccCCeEEEEecccccccHH-
Confidence            788877       2  3333322 2345667777643   4445433333223332   15699999999999865321 


Q ss_pred             CHHHHHH--------------------------Hhhh-cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          69 DESLGRS--------------------------TAVK-YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        69 ~~~~~~~--------------------------~~~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++...                          +-+. .++..+-||+.+|. |.+++|..+-..+-+
T Consensus       199 a~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~-G~ddf~~av~~~vdE  265 (366)
T KOG1532|consen  199 ALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE-GFDDFFTAVDESVDE  265 (366)
T ss_pred             HHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC-cHHHHHHHHHHHHHH
Confidence            1111100                          0011 13567899999999 999999988776654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.99  E-value=0.0015  Score=53.15  Aligned_cols=94  Identities=16%  Similarity=0.082  Sum_probs=54.3

Q ss_pred             CCCCCCccHh--hhcccCcEEEEEEeCCChhhHHHH------HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH
Q psy2792           2 TIGLTEGTLT--AMICWADGCIIVYSLIDKESFDYA------VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG   73 (173)
Q Consensus         2 TaG~e~~~~~--~y~~~ad~iilv~d~~~~~s~~~~------~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~   73 (173)
                      ++|.+++...  .-..+||++|||+|..+.+ |+.-      ......+....  .--.+|++.||.|+.+-++-..++.
T Consensus        92 aPGHrdFvknmItGasqAD~aVLVV~a~~~e-fE~g~~~~gQtrEH~~La~tl--Gi~~lIVavNKMD~v~wde~rf~ei  168 (428)
T COG5256          92 APGHRDFVKNMITGASQADVAVLVVDARDGE-FEAGFGVGGQTREHAFLARTL--GIKQLIVAVNKMDLVSWDEERFEEI  168 (428)
T ss_pred             CCchHHHHHHhhcchhhccEEEEEEECCCCc-cccccccCCchhHHHHHHHhc--CCceEEEEEEcccccccCHHHHHHH
Confidence            4666554222  2366899999999998753 2211      11122223322  2235889999999975332222222


Q ss_pred             ----HHHhhhcC-----CeEEEEcccCCcccHHHH
Q psy2792          74 ----RSTAVKYN-----CTFHEVSVADNSPAIYQA   99 (173)
Q Consensus        74 ----~~~~~~~~-----~~~~e~Sak~g~~~v~~l   99 (173)
                          ..+.+..|     +.|+.|||..|+ |+.+.
T Consensus       169 ~~~v~~l~k~~G~~~~~v~FIPiSg~~G~-Nl~~~  202 (428)
T COG5256         169 VSEVSKLLKMVGYNPKDVPFIPISGFKGD-NLTKK  202 (428)
T ss_pred             HHHHHHHHHHcCCCccCCeEEecccccCC-ccccc
Confidence                22333333     569999999999 88643

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=96.96  E-value=0.0015  Score=57.69  Aligned_cols=57  Identities=23%  Similarity=0.211  Sum_probs=39.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |||+.++  ....+++.+|++|+|+|..+.-..+....|. .+..    .++|+++|+||+|..
T Consensus        93 TPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~-~~~~----~~~p~ivviNKiD~~  151 (720)
T TIGR00490        93 TPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLR-QALK----ENVKPVLFINKVDRL  151 (720)
T ss_pred             CCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHH-HHHH----cCCCEEEEEEChhcc
Confidence            8999884  6677899999999999997732222222232 2222    457889999999975

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG1161 Predicted GTPases [General function prediction only]

Probab=96.96  E-value=0.0015  Score=52.29  Aligned_cols=83  Identities=18%  Similarity=0.076  Sum_probs=56.3

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      ....++..+|+|+.|.|+-++.+...     ..+.+..  .+.|.++|+||+||.... +..+....+....+...+.++
T Consensus        27 ~~~~~~~~~d~vvevvDar~P~~s~~-----~~l~~~v--~~k~~i~vlNK~DL~~~~-~~~~W~~~~~~~~~~~~~~v~   98 (322)
T COG1161          27 QLKEVLKSVDVVVEVVDARDPLGTRN-----PELERIV--KEKPKLLVLNKADLAPKE-VTKKWKKYFKKEEGIKPIFVS   98 (322)
T ss_pred             HHHHhcccCCEEEEEEeccccccccC-----ccHHHHH--ccCCcEEEEehhhcCCHH-HHHHHHHHHHhcCCCccEEEE
Confidence            44567889999999999999865432     2233333  345569999999997532 344555556666567778888


Q ss_pred             ccCCcccHHHHH
Q psy2792          89 VADNSPAIYQAF  100 (173)
Q Consensus        89 ak~g~~~v~~lf  100 (173)
                      ++.+. ++..+.
T Consensus        99 ~~~~~-~~~~i~  109 (322)
T COG1161          99 AKSRQ-GGKKIR  109 (322)
T ss_pred             eeccc-CccchH
Confidence            88777 665555

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=96.90  E-value=0.0058  Score=50.24  Aligned_cols=96  Identities=10%  Similarity=0.043  Sum_probs=60.2

Q ss_pred             CCCCCccHhhh--cccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           3 IGLTEGTLTAM--ICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         3 aG~e~~~~~~y--~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      +|.++.+...-  +...|.+++|+|.++   +++-|++.     +....  .-...++|.+|+|..+...+ .+...+..
T Consensus        58 pgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~-----iLdll--gi~~giivltk~D~~d~~r~-e~~i~~Il  129 (447)
T COG3276          58 PGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLL-----ILDLL--GIKNGIIVLTKADRVDEARI-EQKIKQIL  129 (447)
T ss_pred             CCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHH-----HHHhc--CCCceEEEEeccccccHHHH-HHHHHHHH
Confidence            45544444433  347899999999964   44544432     22222  22346899999998753322 11222222


Q ss_pred             hhc---CCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          78 VKY---NCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        78 ~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ...   ..++|.+|+++|. ||++|.+.|.+..
T Consensus       130 ~~l~l~~~~i~~~s~~~g~-GI~~Lk~~l~~L~  161 (447)
T COG3276         130 ADLSLANAKIFKTSAKTGR-GIEELKNELIDLL  161 (447)
T ss_pred             hhcccccccccccccccCC-CHHHHHHHHHHhh
Confidence            222   3557999999999 9999999999877

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=96.84  E-value=0.024  Score=46.84  Aligned_cols=94  Identities=19%  Similarity=0.187  Sum_probs=58.7

Q ss_pred             Hhhhcc-cCcEEEEEE-eCC--C--hhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC
Q psy2792          10 LTAMIC-WADGCIIVY-SLI--D--KESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC   82 (173)
Q Consensus        10 ~~~y~~-~ad~iilv~-d~~--~--~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~   82 (173)
                      ++..+. .+|+.|+|. |.+  +  ++.+... ..|+.++++    .++|+++|.||+|-....  +.+....+..+++.
T Consensus       137 T~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eLk~----~~kPfiivlN~~dp~~~e--t~~l~~~l~eky~v  210 (492)
T TIGR02836       137 TRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEELKE----LNKPFIILLNSTHPYHPE--TEALRQELEEKYDV  210 (492)
T ss_pred             HHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHHHh----cCCCEEEEEECcCCCCch--hHHHHHHHHHHhCC
Confidence            555666 899999998 764  1  1223333 568888887    459999999999932111  33444566677788


Q ss_pred             eEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          83 TFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        83 ~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +++.+|+..-.  -+++..-+.+.+++-+
T Consensus       211 pvl~v~c~~l~--~~DI~~il~~vL~EFP  237 (492)
T TIGR02836       211 PVLAMDVESMR--ESDILSVLEEVLYEFP  237 (492)
T ss_pred             ceEEEEHHHcC--HHHHHHHHHHHHhcCC
Confidence            88888776432  2344443444455543

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>cd01850 CDC_Septin CDC/Septin

Probab=96.78  E-value=0.0013  Score=51.53  Aligned_cols=76  Identities=9%  Similarity=0.037  Sum_probs=44.3

Q ss_pred             hhccc--CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHhhhcCCeEEEE
Q psy2792          12 AMICW--ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGRSTAVKYNCTFHEV   87 (173)
Q Consensus        12 ~y~~~--ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~~~~~~~~~~~~e~   87 (173)
                      .++.+  +|+++++++.+.. .+....  ++.+....  ..+|+|+|+||+|+....+  .......+.+..+++.+|..
T Consensus       108 ~~~~d~rvh~~ly~i~~~~~-~l~~~D--~~~lk~l~--~~v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~  182 (276)
T cd01850         108 PRIPDTRVHACLYFIEPTGH-GLKPLD--IEFMKRLS--KRVNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKF  182 (276)
T ss_pred             ccCCCCceEEEEEEEeCCCC-CCCHHH--HHHHHHHh--ccCCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECC
Confidence            34444  6677777776542 121111  22223222  3589999999999854222  22344566777888998877


Q ss_pred             cccCC
Q psy2792          88 SVADN   92 (173)
Q Consensus        88 Sak~g   92 (173)
                      .....
T Consensus       183 ~~~~~  187 (276)
T cd01850         183 PEDEE  187 (276)
T ss_pred             CCCcc
Confidence            65443

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PRK00007 elongation factor G; Reviewed

Probab=96.73  E-value=0.0067  Score=53.40  Aligned_cols=58  Identities=19%  Similarity=0.239  Sum_probs=39.0

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|..++.  ...-++.+|++|+|+|....-.-.....| ..+..    .++|+|++.||+|+..
T Consensus        82 TPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~-~~~~~----~~~p~iv~vNK~D~~~  141 (693)
T PRK00007         82 TPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVW-RQADK----YKVPRIAFVNKMDRTG  141 (693)
T ss_pred             CCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHH-HHHHH----cCCCEEEEEECCCCCC
Confidence            78877642  33457899999999998764333322223 23333    3589999999999874

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=96.55  E-value=0.013  Score=39.30  Aligned_cols=41  Identities=27%  Similarity=0.336  Sum_probs=27.7

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK   59 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK   59 (173)
                      .+..+|++++|+|.+++.. +.....+..+.     .+.|+++|.||
T Consensus        76 ~~~~~d~ii~vv~~~~~~~-~~~~~~~~~l~-----~~~~~i~v~NK  116 (116)
T PF01926_consen   76 QISKSDLIIYVVDASNPIT-EDDKNILRELK-----NKKPIILVLNK  116 (116)
T ss_dssp             HHCTESEEEEEEETTSHSH-HHHHHHHHHHH-----TTSEEEEEEES
T ss_pred             HHHHCCEEEEEEECCCCCC-HHHHHHHHHHh-----cCCCEEEEEcC
Confidence            3578999999999877422 22223333342     45899999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd03110 Fer4_NifH_child This protein family's function is unkown

Probab=96.42  E-value=0.036  Score=40.07  Aligned_cols=69  Identities=14%  Similarity=0.127  Sum_probs=48.7

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH   85 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~   85 (173)
                      .....+..+|.+|++...+. .+...+..+++.+.+.    ++|+.+|.||+|....   ...+..++++..+++++
T Consensus       107 ~~~~~l~~aD~vliv~~~~~-~~~~~~~~~~~~l~~~----~~~~~vV~N~~~~~~~---~~~~~~~~~~~~~~~vl  175 (179)
T cd03110         107 PVIASLTGADAALLVTEPTP-SGLHDLERAVELVRHF----GIPVGVVINKYDLNDE---IAEEIEDYCEEEGIPIL  175 (179)
T ss_pred             HHHHHHHcCCEEEEEecCCc-ccHHHHHHHHHHHHHc----CCCEEEEEeCCCCCcc---hHHHHHHHHHHcCCCeE
Confidence            34456789999999998873 4666777777666553    4678999999996431   24456677777787655

It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.

>KOG2423|consensus

Probab=96.39  E-value=0.015  Score=47.47  Aligned_cols=91  Identities=15%  Similarity=0.111  Sum_probs=55.5

Q ss_pred             CCCCCccHhhh---cccCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           3 IGLTEGTLTAM---ICWADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         3 aG~e~~~~~~y---~~~ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      +||..-+|...   +..+|++|-|.|.-||-  .-..++.+   +...  .+...+|+|.|||||.. .-++..+...+.
T Consensus       197 kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~y---lkke--~phKHli~vLNKvDLVP-twvt~~Wv~~lS  270 (572)
T KOG2423|consen  197 KGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEY---LKKE--KPHKHLIYVLNKVDLVP-TWVTAKWVRHLS  270 (572)
T ss_pred             ccchhHHHHHHHHhhcccceeEEeeeccCCcccccHHHHHH---Hhhc--CCcceeEEEeecccccc-HHHHHHHHHHHh
Confidence            46665555443   66899999999999974  22333333   2333  26778999999999964 223344445555


Q ss_pred             hhcCCeEEEEcccCCcccHHHHH
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAF  100 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf  100 (173)
                      +++-.--|..|..+.. |-..++
T Consensus       271 keyPTiAfHAsi~nsf-GKgalI  292 (572)
T KOG2423|consen  271 KEYPTIAFHASINNSF-GKGALI  292 (572)
T ss_pred             hhCcceeeehhhcCcc-chhHHH
Confidence            5555445666665555 433333

>KOG1424|consensus

Probab=96.37  E-value=0.0093  Score=49.98  Aligned_cols=71  Identities=15%  Similarity=0.023  Sum_probs=47.5

Q ss_pred             cccCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccC
Q psy2792          14 ICWADGCIIVYSLIDKESF--DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVAD   91 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~   91 (173)
                      +..+|+||.++|+-+|--|  .+++.++.++.     +....+|+.||+||....++ .. ...+....++.++..||..
T Consensus       172 lErSDivvqIVDARnPllfr~~dLe~Yvke~d-----~~K~~~LLvNKaDLl~~~qr-~a-Wa~YF~~~ni~~vf~SA~~  244 (562)
T KOG1424|consen  172 LERSDIVVQIVDARNPLLFRSPDLEDYVKEVD-----PSKANVLLVNKADLLPPEQR-VA-WAEYFRQNNIPVVFFSALA  244 (562)
T ss_pred             HhhcceEEEEeecCCccccCChhHHHHHhccc-----cccceEEEEehhhcCCHHHH-HH-HHHHHHhcCceEEEEeccc
Confidence            6789999999999998644  34445544443     34567899999999643221 11 1223445678888889886

>cd01882 BMS1 Bms1

Probab=96.35  E-value=0.017  Score=43.75  Aligned_cols=76  Identities=14%  Similarity=0.047  Sum_probs=42.9

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCCCCCcc-CC--HHHHHH-Hhhh--cCCeEE
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDLEHLRQ-VD--ESLGRS-TAVK--YNCTFH   85 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~-v~--~~~~~~-~~~~--~~~~~~   85 (173)
                      ..+.+|++++|+|.+....... ..++..+..    .+.|. ++|.||.|+.+... ..  ...... +..+  .+.+++
T Consensus       100 ~ak~aDvVllviDa~~~~~~~~-~~i~~~l~~----~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~  174 (225)
T cd01882         100 IAKVADLVLLLIDASFGFEMET-FEFLNILQV----HGFPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLF  174 (225)
T ss_pred             HHHhcCEEEEEEecCcCCCHHH-HHHHHHHHH----cCCCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEE
Confidence            4678999999999876432221 223333333    34674 55999999853221 10  111111 2211  235799


Q ss_pred             EEcccCCc
Q psy2792          86 EVSVADNS   93 (173)
Q Consensus        86 e~Sak~g~   93 (173)
                      .+||++..
T Consensus       175 ~iSa~~~~  182 (225)
T cd01882         175 YLSGIVHG  182 (225)
T ss_pred             EEeeccCC
Confidence            99999873

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=96.25  E-value=0.0059  Score=43.52  Aligned_cols=48  Identities=17%  Similarity=0.012  Sum_probs=34.2

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCC
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL   60 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~   60 (173)
                      ++..|+..+|++|+|.+.+...+-.....|.......    ...+++|.||+
T Consensus       121 ~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~----~~~~i~V~nk~  168 (168)
T PF00350_consen  121 ITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPD----KSRTIFVLNKA  168 (168)
T ss_dssp             HHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTT----CSSEEEEEE-G
T ss_pred             HHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCC----CCeEEEEEcCC
Confidence            7888999999999999999865544444555444433    34489999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>KOG4273|consensus

Probab=96.13  E-value=0.016  Score=44.60  Aligned_cols=90  Identities=14%  Similarity=0.163  Sum_probs=60.4

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC---------------------------cc--
Q psy2792          17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL---------------------------RQ--   67 (173)
Q Consensus        17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~---------------------------~~--   67 (173)
                      ..++++|||++....+..+..|+.-..-..  -+ .++.+|||.|....                           ..  
T Consensus        79 l~a~vmvfdlse~s~l~alqdwl~htdins--fd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgis  155 (418)
T KOG4273|consen   79 LQAFVMVFDLSEKSGLDALQDWLPHTDINS--FD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGIS  155 (418)
T ss_pred             eeeEEEEEeccchhhhHHHHhhcccccccc--ch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhcccc
Confidence            357899999999989999999975322111  11 34567999995210                           00  


Q ss_pred             ---------------CCHHHHHHHhhhcCCeEEEEcccC------------CcccHHHHHHHHHHHHhcC
Q psy2792          68 ---------------VDESLGRSTAVKYNCTFHEVSVAD------------NSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        68 ---------------v~~~~~~~~~~~~~~~~~e~Sak~------------g~~~v~~lf~~l~~~i~~~  110 (173)
                                     .....+.+|+.++|+.|++.+|.+            .. ||+.+|..|-..+..+
T Consensus       156 etegssllgsedasldirga~lewc~e~~~efieacasn~dfd~c~~~dgdsq-gverifgal~ahmwpg  224 (418)
T KOG4273|consen  156 ETEGSSLLGSEDASLDIRGAALEWCLEHGFEFIEACASNEDFDECDDDDGDSQ-GVERIFGALNAHMWPG  224 (418)
T ss_pred             ccccccccccccchhhHHHHHHHHHHhcCceeeeecCCccccchhhccCcchh-hHHHHHHHhhhccCcc
Confidence                           011234678999999999999953            24 8899998887655443

>PRK07560 elongation factor EF-2; Reviewed

Probab=95.88  E-value=0.014  Score=51.64  Aligned_cols=57  Identities=23%  Similarity=0.204  Sum_probs=38.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|..++  -....++.+|++|+|+|....-.-.....|. .+..    .++|.|++.||+|+.
T Consensus        94 tPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~-~~~~----~~~~~iv~iNK~D~~  152 (731)
T PRK07560         94 TPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLR-QALR----ERVKPVLFINKVDRL  152 (731)
T ss_pred             CCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHH-HHHH----cCCCeEEEEECchhh
Confidence            7888874  5556789999999999987642222222333 2222    246789999999975

>PTZ00416 elongation factor 2; Provisional

Probab=95.84  E-value=0.013  Score=52.76  Aligned_cols=57  Identities=18%  Similarity=0.264  Sum_probs=38.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|..++  -...-++.+|++|+|+|..+.-.-.....| ..+..    .++|+|+|.||+|+.
T Consensus        99 tPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~-~~~~~----~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         99 SPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVL-RQALQ----ERIRPVLFINKVDRA  157 (836)
T ss_pred             CCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHH-HHHHH----cCCCEEEEEEChhhh
Confidence            7787774  334557899999999998874222222223 33333    358999999999985

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=95.80  E-value=0.014  Score=52.53  Aligned_cols=57  Identities=19%  Similarity=0.222  Sum_probs=39.0

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|..++.  ...-++.+|++|+|+|....-.......|. .+..    .++|+|++.||+|..
T Consensus       105 tPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~-~~~~----~~~p~i~~iNK~D~~  163 (843)
T PLN00116        105 SPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLR-QALG----ERIRPVLTVNKMDRC  163 (843)
T ss_pred             CCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHH-HHHH----CCCCEEEEEECCccc
Confidence            78887753  334478999999999988643222222333 2333    468999999999975

>KOG0458|consensus

Probab=95.79  E-value=0.021  Score=48.57  Aligned_cols=94  Identities=16%  Similarity=0.064  Sum_probs=54.1

Q ss_pred             CCCCCCccHhh--hcccCcEEEEEEeCCChhhHHHH------HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH
Q psy2792           2 TIGLTEGTLTA--MICWADGCIIVYSLIDKESFDYA------VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG   73 (173)
Q Consensus         2 TaG~e~~~~~~--y~~~ad~iilv~d~~~~~s~~~~------~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~   73 (173)
                      ++|..++....  -...||++|+|+|.+. ..|+.-      ...+..+.+..  .---+||+.||.|+.+=.+-..+++
T Consensus       262 aPGhkdFi~nmi~g~sqaD~avLvvd~s~-~~FE~gfd~~gQtrEha~llr~L--gi~qlivaiNKmD~V~Wsq~RF~eI  338 (603)
T KOG0458|consen  262 APGHKDFIPNMISGASQADVAVLVVDAST-GEFESGFDPGGQTREHALLLRSL--GISQLIVAINKMDLVSWSQDRFEEI  338 (603)
T ss_pred             CCCccccchhhhccccccceEEEEEECCc-chhhhccCCCCchHHHHHHHHHc--CcceEEEEeecccccCccHHHHHHH
Confidence            45655543332  2457999999999875 234321      11223333433  2346899999999864222112222


Q ss_pred             ----HHHh-hhcC-----CeEEEEcccCCcccHHHH
Q psy2792          74 ----RSTA-VKYN-----CTFHEVSVADNSPAIYQA   99 (173)
Q Consensus        74 ----~~~~-~~~~-----~~~~e~Sak~g~~~v~~l   99 (173)
                          ..|. +..|     +.|+.||+..|+ |+...
T Consensus       339 k~~l~~fL~~~~gf~es~v~FIPiSGl~Ge-NL~k~  373 (603)
T KOG0458|consen  339 KNKLSSFLKESCGFKESSVKFIPISGLSGE-NLIKI  373 (603)
T ss_pred             HHHHHHHHHHhcCcccCCcceEecccccCC-ccccc
Confidence                2233 3333     569999999999 87644

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=95.70  E-value=0.059  Score=42.51  Aligned_cols=85  Identities=11%  Similarity=0.112  Sum_probs=48.6

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHh----hh--cCCeEE
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTA----VK--YNCTFH   85 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~----~~--~~~~~~   85 (173)
                      ..-||.+++|.-..--+..+-++   .-+.+      +-=|+|.||.|.........  ..+..+.    ..  |.-+.+
T Consensus       162 ~~~aDt~~~v~~pg~GD~~Q~iK---~GimE------iaDi~vINKaD~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~  232 (323)
T COG1703         162 ANMADTFLVVMIPGAGDDLQGIK---AGIME------IADIIVINKADRKGAEKAARELRSALDLLREVWRENGWRPPVV  232 (323)
T ss_pred             hhhcceEEEEecCCCCcHHHHHH---hhhhh------hhheeeEeccChhhHHHHHHHHHHHHHhhcccccccCCCCcee
Confidence            34578877776543333343333   23333      22368899999643211000  0111111    11  224589


Q ss_pred             EEcccCCcccHHHHHHHHHHHHh
Q psy2792          86 EVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        86 e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      .+||..|. |+++|++.+.+...
T Consensus       233 ~t~A~~g~-Gi~~L~~ai~~h~~  254 (323)
T COG1703         233 TTSALEGE-GIDELWDAIEDHRK  254 (323)
T ss_pred             EeeeccCC-CHHHHHHHHHHHHH
Confidence            99999999 99999999987654

>KOG0410|consensus

Probab=95.70  E-value=0.011  Score=47.18  Aligned_cols=85  Identities=18%  Similarity=0.136  Sum_probs=55.9

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc----EEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP----VMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p----iilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      .+..+|.+|.|.|++.|.--++...-+.-+.+.. .+..|    +|=|-||+|..... +.       .+.++  .+.+|
T Consensus       254 eVaeadlllHvvDiShP~ae~q~e~Vl~vL~~ig-v~~~pkl~~mieVdnkiD~e~~~-~e-------~E~n~--~v~is  322 (410)
T KOG0410|consen  254 EVAEADLLLHVVDISHPNAEEQRETVLHVLNQIG-VPSEPKLQNMIEVDNKIDYEEDE-VE-------EEKNL--DVGIS  322 (410)
T ss_pred             HHhhcceEEEEeecCCccHHHHHHHHHHHHHhcC-CCcHHHHhHHHhhcccccccccc-Cc-------cccCC--ccccc
Confidence            4678999999999999875555444444444433 23333    45567788864321 11       12222  57899


Q ss_pred             ccCCcccHHHHHHHHHHHHhc
Q psy2792          89 VADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~i~~  109 (173)
                      |++|+ |.+++...+-..+..
T Consensus       323 altgd-gl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  323 ALTGD-GLEELLKAEETKVAS  342 (410)
T ss_pred             cccCc-cHHHHHHHHHHHhhh
Confidence            99999 999999888776654

>KOG3886|consensus

Probab=95.68  E-value=0.064  Score=40.92  Aligned_cols=95  Identities=18%  Similarity=0.266  Sum_probs=56.9

Q ss_pred             hhhcccCcEEEEEEeCCChhh---HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--cCCHHH----HHHHhhhcC
Q psy2792          11 TAMICWADGCIIVYSLIDKES---FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--QVDESL----GRSTAVKYN   81 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s---~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~~~~----~~~~~~~~~   81 (173)
                      ..-+++.+++|+|||+...+-   |+.....++.+.++.  ++..+.+...|.||....  ++..++    ...+....+
T Consensus        76 d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~S--P~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~~~~  153 (295)
T KOG3886|consen   76 DNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNS--PEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSRPLE  153 (295)
T ss_pred             hhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcC--CcceEEEEEeechhcccchHHHHHHHHHHHHHHhccccc
Confidence            355889999999999987653   333344555666654  778899999999996422  211111    112222334


Q ss_pred             CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          82 CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        82 ~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +.+|.+|.-+.  .+......++..+..
T Consensus       154 ~~~f~TsiwDe--tl~KAWS~iv~~lip  179 (295)
T KOG3886|consen  154 CKCFPTSIWDE--TLYKAWSSIVYNLIP  179 (295)
T ss_pred             ccccccchhhH--HHHHHHHHHHHhhCC
Confidence            56777776543  345555555544443

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=95.67  E-value=0.008  Score=46.39  Aligned_cols=84  Identities=10%  Similarity=0.036  Sum_probs=46.8

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhh----hcCCeEEEE
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAV----KYNCTFHEV   87 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~----~~~~~~~e~   87 (173)
                      ..-||.+++|.-..--+..+.++.=   +.+      +.=|+|.||+|.......-.  .....+..    .+..+++.|
T Consensus       140 ~~~aD~~v~v~~Pg~GD~iQ~~KaG---imE------iaDi~vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~t  210 (266)
T PF03308_consen  140 ADMADTVVLVLVPGLGDEIQAIKAG---IME------IADIFVVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKT  210 (266)
T ss_dssp             HTTSSEEEEEEESSTCCCCCTB-TT---HHH------H-SEEEEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEE
T ss_pred             HHhcCeEEEEecCCCccHHHHHhhh---hhh------hccEEEEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEE
Confidence            4468899988876554444333322   222      23378899999643211101  11112222    123468999


Q ss_pred             cccCCcccHHHHHHHHHHHH
Q psy2792          88 SVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ||.++. ||+++++.|.+..
T Consensus       211 sA~~~~-Gi~eL~~~i~~~~  229 (266)
T PF03308_consen  211 SALEGE-GIDELWEAIDEHR  229 (266)
T ss_dssp             BTTTTB-SHHHHHHHHHHHH
T ss_pred             EeCCCC-CHHHHHHHHHHHH
Confidence            999999 9999999988643

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []

Probab=95.65  E-value=0.19  Score=36.50  Aligned_cols=90  Identities=19%  Similarity=0.117  Sum_probs=64.2

Q ss_pred             cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCccc
Q psy2792          16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPA   95 (173)
Q Consensus        16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~   95 (173)
                      ..|.|+|++|.+..-|+..++.-+..+....  ---.+.++++-+...+.-.+...+..+++..+.++++.+--.+.. +
T Consensus        64 rIDlIVFvinl~sk~SL~~ve~SL~~vd~~f--flGKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~-~  140 (176)
T PF11111_consen   64 RIDLIVFVINLHSKYSLQSVEASLSHVDPSF--FLGKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEE-G  140 (176)
T ss_pred             eeEEEEEEEecCCcccHHHHHHHHhhCChhh--hccceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccch-H
Confidence            4799999999999989887766444443221  112355566666655556788899999999999998888777666 7


Q ss_pred             HHHHHHHHHHHHh
Q psy2792          96 IYQAFDHLLTESR  108 (173)
Q Consensus        96 v~~lf~~l~~~i~  108 (173)
                      ...+-+.|++.+.
T Consensus       141 ~~~lAqRLL~~lq  153 (176)
T PF11111_consen  141 RTSLAQRLLRMLQ  153 (176)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777666666543

CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].

>smart00053 DYNc Dynamin, GTPase

Probab=95.52  E-value=0.047  Score=41.89  Aligned_cols=52  Identities=13%  Similarity=0.024  Sum_probs=32.7

Q ss_pred             cHhhhccc-CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           9 TLTAMICW-ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         9 ~~~~y~~~-ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      +...|+++ .+++++|.|.+.--.-.........+.    ....++++|.||+|..+
T Consensus       154 lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld----~~~~rti~ViTK~D~~~  206 (240)
T smart00053      154 MIKQFISKEECLILAVTPANVDLANSDALKLAKEVD----PQGERTIGVITKLDLMD  206 (240)
T ss_pred             HHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHH----HcCCcEEEEEECCCCCC
Confidence            67789995 458999998754211111112222232    24689999999999864

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG2484|consensus

Probab=95.35  E-value=0.03  Score=45.63  Aligned_cols=71  Identities=18%  Similarity=0.069  Sum_probs=42.9

Q ss_pred             cccCcEEEEEEeCCChhhH--HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792          14 ICWADGCIIVYSLIDKESF--DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA   90 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~--~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak   90 (173)
                      +..+|+||.|.|.-||.+-  .+++.|+-   +.  ..+...|+|.||+||.. +++-.++...+..+...-.|.+|..
T Consensus       144 ve~sDVVleVlDARDPlgtR~~~vE~~V~---~~--~gnKkLILVLNK~DLVP-rEv~e~Wl~YLr~~~ptv~fkast~  216 (435)
T KOG2484|consen  144 VEASDVVLEVLDARDPLGTRCPEVEEAVL---QA--HGNKKLILVLNKIDLVP-REVVEKWLVYLRREGPTVAFKASTQ  216 (435)
T ss_pred             HhhhheEEEeeeccCCCCCCChhHHHHHH---hc--cCCceEEEEeehhccCC-HHHHHHHHHHHHhhCCcceeecccc
Confidence            5569999999999998753  33444432   21  14578999999999964 3333344444444333323444433

>KOG0461|consensus

Probab=95.17  E-value=0.1  Score=42.13  Aligned_cols=92  Identities=20%  Similarity=0.182  Sum_probs=52.6

Q ss_pred             cHhhhcccC---cEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCCHH-HHHHHhhh
Q psy2792           9 TLTAMICWA---DGCIIVYSLIDK---ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVDES-LGRSTAVK   79 (173)
Q Consensus         9 ~~~~y~~~a---d~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~-~~~~~~~~   79 (173)
                      +.+..+.+|   |..++|+|+..-   ++-+.+  .+.++..      ...|+|.||+|+..+  |.-..+ ......+.
T Consensus        83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcL--iig~~~c------~klvvvinkid~lpE~qr~ski~k~~kk~~Kt  154 (522)
T KOG0461|consen   83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECL--IIGELLC------KKLVVVINKIDVLPENQRASKIEKSAKKVRKT  154 (522)
T ss_pred             HHHHHHhhhheeeeeeEEEehhcccccccchhh--hhhhhhc------cceEEEEeccccccchhhhhHHHHHHHHHHHH
Confidence            445555554   678999998753   222211  2222222      347788899887532  221111 12222221


Q ss_pred             c-------CCeEEEEcccCC----cccHHHHHHHHHHHHhc
Q psy2792          80 Y-------NCTFHEVSVADN----SPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~-------~~~~~e~Sak~g----~~~v~~lf~~l~~~i~~  109 (173)
                      +       +.+.+++||+.|    + ++.++.+.|...+.+
T Consensus       155 Le~t~f~g~~PI~~vsa~~G~~~~~-~i~eL~e~l~s~if~  194 (522)
T KOG0461|consen  155 LESTGFDGNSPIVEVSAADGYFKEE-MIQELKEALESRIFE  194 (522)
T ss_pred             HHhcCcCCCCceeEEecCCCccchh-HHHHHHHHHHHhhcC
Confidence            1       266899999999    6 777777777777665

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=95.15  E-value=0.084  Score=41.73  Aligned_cols=86  Identities=19%  Similarity=0.195  Sum_probs=51.0

Q ss_pred             cCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHHHhhhcCC-----e
Q psy2792          16 WADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRSTAVKYNC-----T   83 (173)
Q Consensus        16 ~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~~~~~~~~-----~   83 (173)
                      +.|+.|+|++.+|   |++-+++.    ..++    -.+| ++++.||+|+.+..+.-   +.+..++...+++     +
T Consensus        98 qmDgAILVVsA~dGpmPqTrEHiL----larq----vGvp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~P  169 (394)
T COG0050          98 QMDGAILVVAATDGPMPQTREHIL----LARQ----VGVPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTP  169 (394)
T ss_pred             hcCccEEEEEcCCCCCCcchhhhh----hhhh----cCCcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence            5799999999998   44554431    1222    2365 67789999998644322   2345566666664     3


Q ss_pred             EEEEcccCCc-------ccHHHHHHHHHHHHhc
Q psy2792          84 FHEVSVADNS-------PAIYQAFDHLLTESRG  109 (173)
Q Consensus        84 ~~e~Sak~g~-------~~v~~lf~~l~~~i~~  109 (173)
                      ++.-||....       ..|.+|++.+-+.+..
T Consensus       170 ii~gSal~ale~~~~~~~~i~eLm~avd~yip~  202 (394)
T COG0050         170 IIRGSALKALEGDAKWEAKIEELMDAVDSYIPT  202 (394)
T ss_pred             eeechhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence            5666665322       1356666666555543

>KOG0447|consensus

Probab=95.15  E-value=0.094  Score=44.78  Aligned_cols=75  Identities=16%  Similarity=0.114  Sum_probs=52.8

Q ss_pred             CCCCCCC-------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH
Q psy2792           1 MTIGLTE-------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG   73 (173)
Q Consensus         1 ~TaG~e~-------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~   73 (173)
                      ||+|...       .+..+|+.+-++||+|+-=.   |.+.-...+..+....++.+.-.|+|.+|.||.+....++..+
T Consensus       426 vT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG---SVDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI  502 (980)
T KOG0447|consen  426 VTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG---SVDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRI  502 (980)
T ss_pred             hcccccccchHHHHHHHHHHhcCCCeEEEEeccC---CcchhhhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHH
Confidence            6888776       28899999999999998532   2222233344455555556778999999999987666677777


Q ss_pred             HHHhh
Q psy2792          74 RSTAV   78 (173)
Q Consensus        74 ~~~~~   78 (173)
                      ....+
T Consensus       503 ~kIle  507 (980)
T KOG0447|consen  503 QQIIE  507 (980)
T ss_pred             HHHHh
Confidence            66554

>KOG0468|consensus

Probab=94.65  E-value=0.054  Score=47.08  Aligned_cols=56  Identities=21%  Similarity=0.343  Sum_probs=38.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL   62 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl   62 (173)
                      |+|.-++  =.-.-++-+|++++|+|+.+--.++.- ..+....    ..+.|+++|.||.|.
T Consensus       204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE-r~ikhai----q~~~~i~vviNKiDR  261 (971)
T KOG0468|consen  204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE-RIIKHAI----QNRLPIVVVINKVDR  261 (971)
T ss_pred             CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHH-HHHHHHH----hccCcEEEEEehhHH
Confidence            6777664  334468899999999999876555432 2222222    356999999999995

>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]

Probab=94.51  E-value=0.24  Score=38.61  Aligned_cols=63  Identities=14%  Similarity=0.089  Sum_probs=47.5

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH   85 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~   85 (173)
                      +-+.+||.+|+|-..| +..+.+++..++.+...    ++|..+|.||.++-.     . +.++++.+.+++++
T Consensus       181 ~sl~~aD~ai~VTEPT-p~glhD~kr~~el~~~f----~ip~~iViNr~~~g~-----s-~ie~~~~e~gi~il  243 (284)
T COG1149         181 ASLKGADLAILVTEPT-PFGLHDLKRALELVEHF----GIPTGIVINRYNLGD-----S-EIEEYCEEEGIPIL  243 (284)
T ss_pred             HhhccCCEEEEEecCC-ccchhHHHHHHHHHHHh----CCceEEEEecCCCCc-----h-HHHHHHHHcCCCee
Confidence            4578999999998776 44677777776666654    599999999997532     2 67888888887754

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=94.46  E-value=0.16  Score=42.20  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=38.8

Q ss_pred             CCCCCCccHhhh--cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEGTLTAM--ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~~~~~y--~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|.+++--..|  +--+|.+|.|.|...-  .+.-.   ..+-+.+...++||+-..||.|...
T Consensus        88 TPGHeDFSEDTYRtLtAvDsAvMVIDaAKG--iE~qT---~KLfeVcrlR~iPI~TFiNKlDR~~  147 (528)
T COG4108          88 TPGHEDFSEDTYRTLTAVDSAVMVIDAAKG--IEPQT---LKLFEVCRLRDIPIFTFINKLDREG  147 (528)
T ss_pred             CCCccccchhHHHHHHhhheeeEEEecccC--ccHHH---HHHHHHHhhcCCceEEEeecccccc
Confidence            899988644444  6679999999998763  11101   1122333346899999999999653

>COG3596 Predicted GTPase [General function prediction only]

Probab=94.41  E-value=0.22  Score=38.96  Aligned_cols=103  Identities=14%  Similarity=-0.002  Sum_probs=66.1

Q ss_pred             CCCCCCc---------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC-------
Q psy2792           2 TIGLTEG---------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL-------   65 (173)
Q Consensus         2 TaG~e~~---------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-------   65 (173)
                      |+|.+++         +...|+...|.++++.+..|+.=--+ ..++..+....  -+.++++|.|.+|....       
T Consensus        94 tPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d-~~f~~dVi~~~--~~~~~i~~VtQ~D~a~p~~~W~~~  170 (296)
T COG3596          94 TPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTD-EDFLRDVIILG--LDKRVLFVVTQADRAEPGREWDSA  170 (296)
T ss_pred             CCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCC-HHHHHHHHHhc--cCceeEEEEehhhhhccccccccc
Confidence            7888873         45567888999999999998742111 33344444433  34899999999997422       


Q ss_pred             -ccCCH-------HHH---HHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          66 -RQVDE-------SLG---RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        66 -~~v~~-------~~~---~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                       ...+.       +.+   .+++.. -.+++.++...+. |++.+...++..+..
T Consensus       171 ~~~p~~a~~qfi~~k~~~~~~~~q~-V~pV~~~~~r~~w-gl~~l~~ali~~lp~  223 (296)
T COG3596         171 GHQPSPAIKQFIEEKAEALGRLFQE-VKPVVAVSGRLPW-GLKELVRALITALPV  223 (296)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHhh-cCCeEEeccccCc-cHHHHHHHHHHhCcc
Confidence             11111       111   112221 1346778889999 999999999988764

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=94.05  E-value=0.43  Score=36.52  Aligned_cols=71  Identities=21%  Similarity=0.108  Sum_probs=41.8

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN   81 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~   81 (173)
                      -||.| -+.+-..+++|.+|.|.|.+. +|+...+...+...+ .  .=.++.+|.||.|-.      .......+...+
T Consensus       142 EAGiE-HfgRg~~~~vD~vivVvDpS~-~sl~taeri~~L~~e-l--g~k~i~~V~NKv~e~------e~~~~~~~~~~~  210 (255)
T COG3640         142 EAGIE-HFGRGTIEGVDLVIVVVDPSY-KSLRTAERIKELAEE-L--GIKRIFVVLNKVDEE------EELLRELAEELG  210 (255)
T ss_pred             ccchh-hhccccccCCCEEEEEeCCcH-HHHHHHHHHHHHHHH-h--CCceEEEEEeeccch------hHHHHhhhhccC
Confidence            35553 234445789999999999864 455544443332222 2  126899999999942      233444455555


Q ss_pred             Ce
Q psy2792          82 CT   83 (173)
Q Consensus        82 ~~   83 (173)
                      .+
T Consensus       211 ~~  212 (255)
T COG3640         211 LE  212 (255)
T ss_pred             Ce
Confidence            43

>PF14331 ImcF-related_N: ImcF-related N-terminal domain

Probab=93.96  E-value=0.17  Score=39.34  Aligned_cols=48  Identities=27%  Similarity=0.292  Sum_probs=31.1

Q ss_pred             cCcEEEEEEeCCCh-----h--hHHHH----HHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792          16 WADGCIIVYSLIDK-----E--SFDYA----VSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus        16 ~ad~iilv~d~~~~-----~--s~~~~----~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      -.++||+++|+.+-     +  .+...    ..-+.++.+.. .-.+||.||.+|+|+..
T Consensus        25 PlnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~l-g~~~PVYvv~Tk~D~l~   83 (266)
T PF14331_consen   25 PLNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTL-GVRLPVYVVFTKCDLLP   83 (266)
T ss_pred             CCCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHh-CCCCCeEeeeECCCccc
Confidence            46999999998652     1  12221    22334444433 36899999999999864

>KOG3887|consensus

Probab=93.71  E-value=0.57  Score=36.19  Aligned_cols=107  Identities=16%  Similarity=0.167  Sum_probs=62.6

Q ss_pred             CCCCCc-----cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHh-hhCCCCCcEEEEEeCCCCCCC-ccCCH-----
Q psy2792           3 IGLTEG-----TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQR-HRAVNNVPVMLLANKLDLEHL-RQVDE-----   70 (173)
Q Consensus         3 aG~e~~-----~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~-~~~~~~~piilv~NK~Dl~~~-~~v~~-----   70 (173)
                      +||-+.     -....++++-+.|+|.|.-+. -.+.+......+.+ +.-.+++.+=+...|.|-..+ -.+..     
T Consensus        83 PGQ~~~Fd~s~D~e~iF~~~gALifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~  161 (347)
T KOG3887|consen   83 PGQMDFFDPSFDYEMIFRGVGALIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIH  161 (347)
T ss_pred             CCccccCCCccCHHHHHhccCeEEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHH
Confidence            577663     344568999999999998653 12222222222221 222378888899999995422 11211     


Q ss_pred             -HHHHHHhh----hcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          71 -SLGRSTAV----KYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        71 -~~~~~~~~----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                       .....++.    ...+.|+.+|..+ . .|-|.|..+++.+..+-+
T Consensus       162 qr~~d~l~d~gle~v~vsf~LTSIyD-H-SIfEAFSkvVQkLipqLp  206 (347)
T KOG3887|consen  162 QRTNDELADAGLEKVQVSFYLTSIYD-H-SIFEAFSKVVQKLIPQLP  206 (347)
T ss_pred             HHhhHHHHhhhhccceEEEEEeeecc-h-HHHHHHHHHHHHHhhhch
Confidence             11122222    2224577777665 4 699999999988876443

>KOG0099|consensus

Probab=93.66  E-value=0.31  Score=38.01  Aligned_cols=60  Identities=18%  Similarity=0.222  Sum_probs=38.2

Q ss_pred             CCCCCc--cHhhhcccCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792           3 IGLTEG--TLTAMICWADGCIIVYSLIDKE----------SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL   62 (173)
Q Consensus         3 aG~e~~--~~~~y~~~ad~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl   62 (173)
                      .||++.  .|-..+.+..+||||...+...          .+.+....+..+.+..=...+-+||..||.||
T Consensus       210 GGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqDl  281 (379)
T KOG0099|consen  210 GGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQDL  281 (379)
T ss_pred             CCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHHH
Confidence            577764  8889999999999999876521          12222222222222211134779999999998

>PRK13505 formate--tetrahydrofolate ligase; Provisional

Probab=92.97  E-value=0.85  Score=39.06  Aligned_cols=71  Identities=10%  Similarity=0.093  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE--cccCCcccHHHHHHHHHHHHhc
Q psy2792          32 FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV--SVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        32 ~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~--Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      |.++..-++.++.+    ++|++|+.||.|...+.+  .+..+++|.+.|+.+..+  =++-|. |-.++-..+++.+.+
T Consensus       358 l~NL~RHIenvr~F----GvPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~~Gg~-Gai~LA~aVveA~~~  430 (557)
T PRK13505        358 FANLERHIENIRKF----GVPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWAKGGE-GGVELAEKVVELIEE  430 (557)
T ss_pred             HHHHHHHHHHHHHc----CCCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccccCCc-chHHHHHHHHHHHhc
Confidence            45555555555554    599999999999854322  456788999999886633  344566 777777777776654

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=92.20  E-value=2.6  Score=30.54  Aligned_cols=86  Identities=7%  Similarity=0.016  Sum_probs=61.0

Q ss_pred             cccCcEEEEEEeCCCh-------hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792          14 ICWADGCIIVYSLIDK-------ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE   86 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~-------~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e   86 (173)
                      ++...+=.+++|.+|-       +-.+++..|++++++..  ..--++||-|-+-..+  .....++..+.+.++++++.
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~--~~~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~  111 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQF--GKDRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLR  111 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHC--CCCeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEE
Confidence            6677777788898773       12356788999998765  2225889999764322  33467888899999999988


Q ss_pred             EcccCCcccHHHHHHHHH
Q psy2792          87 VSVADNSPAIYQAFDHLL  104 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~  104 (173)
                      -+++... +..++...+.
T Consensus       112 h~~kKP~-~~~~i~~~~~  128 (168)
T PF09419_consen  112 HRAKKPG-CFREILKYFK  128 (168)
T ss_pred             eCCCCCc-cHHHHHHHHh
Confidence            8887776 7777666553

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=92.17  E-value=1.1  Score=36.89  Aligned_cols=101  Identities=14%  Similarity=0.042  Sum_probs=52.4

Q ss_pred             CCCCCCc----cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHH-
Q psy2792           2 TIGLTEG----TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGR-   74 (173)
Q Consensus         2 TaG~e~~----~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~-   74 (173)
                      |.|.|..    ++-..-...|-.++|+..+|--+-- .++-+--..    .-+.|+|+|.+|+|+..+..+.  .+++. 
T Consensus       208 tvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~-tkEHLgi~~----a~~lPviVvvTK~D~~~ddr~~~v~~ei~~  282 (527)
T COG5258         208 TVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKM-TKEHLGIAL----AMELPVIVVVTKIDMVPDDRFQGVVEEISA  282 (527)
T ss_pred             cCCccHHHHHHHHHHhccccceEEEEEEccCCcchh-hhHhhhhhh----hhcCCEEEEEEecccCcHHHHHHHHHHHHH
Confidence            4455542    3333445567777777766632210 011111111    1468999999999996431110  01110 


Q ss_pred             ---------------------HHhhhcC---CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          75 ---------------------STAVKYN---CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        75 ---------------------~~~~~~~---~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                           ..+-+.+   .++|.+|+.+|. |++-| ..+...+..
T Consensus       283 ~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~-GldlL-~e~f~~Lp~  339 (527)
T COG5258         283 LLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE-GLDLL-DEFFLLLPK  339 (527)
T ss_pred             HHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc-cHHHH-HHHHHhCCc
Confidence                                 1112222   568999999999 97644 444444443

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=92.15  E-value=0.26  Score=43.50  Aligned_cols=56  Identities=21%  Similarity=0.267  Sum_probs=38.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL   62 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl   62 (173)
                      |+|.-++  =...-++-+|++|+|+|...--......-|... .+    .++|.|++.||.|.
T Consensus        83 TPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa-~~----~~vp~i~fiNKmDR  140 (697)
T COG0480          83 TPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQA-DK----YGVPRILFVNKMDR  140 (697)
T ss_pred             CCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHH-hh----cCCCeEEEEECccc
Confidence            7888875  334568899999999999764222222334332 22    46999999999996

>KOG0466|consensus

Probab=91.68  E-value=0.25  Score=39.33  Aligned_cols=87  Identities=10%  Similarity=0.059  Sum_probs=57.4

Q ss_pred             cEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhhh---cCCeEEEEc
Q psy2792          18 DGCIIVYSLID----KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAVK---YNCTFHEVS   88 (173)
Q Consensus        18 d~iilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~---~~~~~~e~S   88 (173)
                      |+++++...+.    |++-+++..  -++.+.     ..++++-||+||..+.+..  .+.++.|...   .+.+.+.+|
T Consensus       150 DaalLlIA~NEsCPQPQTsEHLaa--veiM~L-----khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPis  222 (466)
T KOG0466|consen  150 DAALLLIAGNESCPQPQTSEHLAA--VEIMKL-----KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPIS  222 (466)
T ss_pred             hhhhhhhhcCCCCCCCchhhHHHH--HHHhhh-----ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeeh
Confidence            66777766554    344454432  223332     3588999999997543321  2334455443   256799999


Q ss_pred             ccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          89 VADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      |.-+. ||+.+.+.|+..+.....
T Consensus       223 AQlky-NId~v~eyivkkIPvPvR  245 (466)
T KOG0466|consen  223 AQLKY-NIDVVCEYIVKKIPVPVR  245 (466)
T ss_pred             hhhcc-ChHHHHHHHHhcCCCCcc
Confidence            99999 999999999999876443

>KOG1954|consensus

Probab=91.12  E-value=0.27  Score=40.14  Aligned_cols=52  Identities=15%  Similarity=0.143  Sum_probs=34.1

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      ..+=|...+|.||++||....+--++....+..++.    .+-.+-||.||+|..+
T Consensus       174 v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG----~EdkiRVVLNKADqVd  225 (532)
T KOG1954|consen  174 VLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKG----HEDKIRVVLNKADQVD  225 (532)
T ss_pred             HHHHHHHhccEEEEEechhhccccHHHHHHHHHhhC----CcceeEEEeccccccC
Confidence            445567889999999997654433333444444444    3346778899999753

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=90.04  E-value=1.4  Score=30.47  Aligned_cols=51  Identities=16%  Similarity=0.185  Sum_probs=35.7

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL   62 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl   62 (173)
                      .....+..+|.+++|.+.+ ..++......++.+.+..  ...++.+|.|+++-
T Consensus        59 ~~~~~l~~aD~vviv~~~~-~~s~~~~~~~l~~l~~~~--~~~~~~lVvN~~~~  109 (139)
T cd02038          59 NVLDFFLAADEVIVVTTPE-PTSITDAYALIKKLAKQL--RVLNFRVVVNRAES  109 (139)
T ss_pred             HHHHHHHhCCeEEEEcCCC-hhHHHHHHHHHHHHHHhc--CCCCEEEEEeCCCC
Confidence            4456789999999999885 445665555555554433  34578899999974

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=88.33  E-value=2.4  Score=33.87  Aligned_cols=53  Identities=8%  Similarity=-0.038  Sum_probs=29.9

Q ss_pred             cCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCC
Q psy2792          16 WADGCIIVYSLIDKESFDYA-VSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVD   69 (173)
Q Consensus        16 ~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~   69 (173)
                      +.|++|||..++... +... ...++.+....+ .--.++|||.+++|.......+
T Consensus       118 g~DvVLyV~rLD~~R-~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~  172 (313)
T TIGR00991       118 TIDVLLYVDRLDAYR-VDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLE  172 (313)
T ss_pred             CCCEEEEEeccCccc-CCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCC
Confidence            689999997655321 2222 234444444331 1224689999999975333333

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=87.92  E-value=3.1  Score=27.37  Aligned_cols=50  Identities=20%  Similarity=0.056  Sum_probs=34.5

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeC
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANK   59 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK   59 (173)
                      .....+..+|.+|++.+.+ ..++..+..+++.+.+........+.+|+|+
T Consensus        57 ~~~~~l~~aD~vlvvv~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          57 VSLAALDQADRVFLVTQQD-LPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             HHHHHHHHcCeEEEEecCC-hHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence            4456788999999999764 4577777777777766542113467778775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=86.57  E-value=3.3  Score=33.28  Aligned_cols=67  Identities=16%  Similarity=0.046  Sum_probs=37.0

Q ss_pred             cCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC--CeEEEEccc
Q psy2792          16 WADGCIIVYSLIDKESFDY-AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN--CTFHEVSVA   90 (173)
Q Consensus        16 ~ad~iilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~Sak   90 (173)
                      .-|++|-|+|...-..... +.....+-...      -=+||.||+|+.+...  .+.......+.+  ..++.++..
T Consensus       116 ~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~------AD~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~~  185 (323)
T COG0523         116 RLDGVVTVVDAAHFLEGLDAIAELAEDQLAF------ADVIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSYG  185 (323)
T ss_pred             eeceEEEEEeHHHhhhhHHHHHHHHHHHHHh------CcEEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEcccc
Confidence            3578999999866432111 22222222222      2267899999976443  233344444443  667887773

>KOG0460|consensus

Probab=85.49  E-value=4  Score=33.23  Aligned_cols=68  Identities=18%  Similarity=0.136  Sum_probs=39.8

Q ss_pred             cCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC---CHHHHHHHhhhcC-----CeE
Q psy2792          16 WADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV---DESLGRSTAVKYN-----CTF   84 (173)
Q Consensus        16 ~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v---~~~~~~~~~~~~~-----~~~   84 (173)
                      +-|++|+|+..+|   |++-+++    -..++..   -..+++..||.|+.++.+.   -+-+..++..++|     +++
T Consensus       140 qMDGaILVVaatDG~MPQTrEHl----LLArQVG---V~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~Pv  212 (449)
T KOG0460|consen  140 QMDGAILVVAATDGPMPQTREHL----LLARQVG---VKHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPV  212 (449)
T ss_pred             ccCceEEEEEcCCCCCcchHHHH----HHHHHcC---CceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCe
Confidence            4699999999998   3444433    2223322   1247788999999743321   1223455666665     446


Q ss_pred             EEEccc
Q psy2792          85 HEVSVA   90 (173)
Q Consensus        85 ~e~Sak   90 (173)
                      +.=||.
T Consensus       213 I~GSAL  218 (449)
T KOG0460|consen  213 IRGSAL  218 (449)
T ss_pred             eecchh
Confidence            655554

>KOG2485|consensus

Probab=85.45  E-value=2.4  Score=33.80  Aligned_cols=84  Identities=14%  Similarity=0.087  Sum_probs=47.6

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA   90 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak   90 (173)
                      +.-+...|+||=|-|+--|-|-.+.  .   +....  +..|-|||.||+||.+..+ ....++.++.+....++..++.
T Consensus        41 ~~~l~~~D~iiEvrDaRiPLssrn~--~---~~~~~--~~k~riiVlNK~DLad~~~-~k~~iq~~~~~~~~~~~~~~c~  112 (335)
T KOG2485|consen   41 QNRLPLVDCIIEVRDARIPLSSRNE--L---FQDFL--PPKPRIIVLNKMDLADPKE-QKKIIQYLEWQNLESYIKLDCN  112 (335)
T ss_pred             HhhcccccEEEEeeccccCCccccH--H---HHHhc--CCCceEEEEecccccCchh-hhHHHHHHHhhcccchhhhhhh
Confidence            4457789999999998766443221  1   22222  4678999999999976332 2334455555544334433333


Q ss_pred             --CCcccHHHHHHHH
Q psy2792          91 --DNSPAIYQAFDHL  103 (173)
Q Consensus        91 --~g~~~v~~lf~~l  103 (173)
                        ... ++..++..+
T Consensus       113 ~~~~~-~v~~l~~il  126 (335)
T KOG2485|consen  113 KDCNK-QVSPLLKIL  126 (335)
T ss_pred             hhhhh-ccccHHHHH
Confidence              332 355554433

>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]

Probab=85.07  E-value=5.7  Score=32.42  Aligned_cols=54  Identities=22%  Similarity=0.244  Sum_probs=44.7

Q ss_pred             ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      ..+..++.++|.|++|.+.+ -.++...++.++++.+.. ....+..+|.||.+-.
T Consensus       231 ~~t~~vL~~Sd~iviv~e~s-l~slR~ak~lld~l~~~r-~~~~~p~lv~n~~~~~  284 (366)
T COG4963         231 DWTRQVLSGSDEIVIVAEPS-LASLRNAKELLDELKRLR-PNDPKPILVLNRVGVP  284 (366)
T ss_pred             hHHHHHHhcCCeEEEEeccc-HHHHHHHHHHHHHHHHhC-CCCCCceEEeeecCCC
Confidence            36788999999999999975 347788888888888877 4677888999999964

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=84.11  E-value=1.4  Score=41.53  Aligned_cols=48  Identities=27%  Similarity=0.247  Sum_probs=34.5

Q ss_pred             ccCcEEEEEEeCCChh-----hH----HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792          15 CWADGCIIVYSLIDKE-----SF----DYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus        15 ~~ad~iilv~d~~~~~-----s~----~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      +-.|+||+++|+.+--     ..    ..+...+.++.+.. .-.+||.||.+|+|+.
T Consensus       200 ~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~l-g~~~PVYvv~Tk~Dll  256 (1169)
T TIGR03348       200 QPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQL-GARFPVYLVLTKADLL  256 (1169)
T ss_pred             CCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHh-CCCCCEEEEEecchhh
Confidence            3589999999987632     11    23445566666655 3689999999999985

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=83.95  E-value=11  Score=26.60  Aligned_cols=71  Identities=13%  Similarity=0.030  Sum_probs=42.7

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH   85 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~   85 (173)
                      .....+..+|.+|++.+.+. .++..+..+++.+...   ....+.+|.|++|-...  ...+....+.+.++..++
T Consensus        77 ~~~~~l~~ad~viiv~~~~~-~s~~~~~~~~~~~~~~---~~~~~~iv~N~~~~~~~--~~~~~~~~~~~~~~~~v~  147 (179)
T cd02036          77 GFITAIAPADEALLVTTPEI-SSLRDADRVKGLLEAL---GIKVVGVIVNRVRPDMV--EGGDMVEDIEEILGVPLL  147 (179)
T ss_pred             HHHHHHHhCCcEEEEeCCCc-chHHHHHHHHHHHHHc---CCceEEEEEeCCccccc--chhhHHHHHHHHhCCCEE
Confidence            34456789999999998754 4566666666666542   22356789999985321  122223344455565543

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>KOG1486|consensus

Probab=81.85  E-value=6.6  Score=30.70  Aligned_cols=53  Identities=15%  Similarity=0.077  Sum_probs=40.5

Q ss_pred             CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .-++.+.|-||+|.     ++.++...+|..-+.  +-+|+.-.- |++.+.+.+-+.+.-
T Consensus       237 ~Y~~ClYvYnKID~-----vs~eevdrlAr~Pns--vViSC~m~l-nld~lle~iWe~l~L  289 (364)
T KOG1486|consen  237 VYIKCLYVYNKIDQ-----VSIEEVDRLARQPNS--VVISCNMKL-NLDRLLERIWEELNL  289 (364)
T ss_pred             eEEEEEEEeeccce-----ecHHHHHHHhcCCCc--EEEEecccc-CHHHHHHHHHHHhce
Confidence            34789999999994     568888888887664  455666667 888888888776654

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=81.79  E-value=6.6  Score=29.24  Aligned_cols=95  Identities=11%  Similarity=0.009  Sum_probs=53.7

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCC-------HHHHHHHhhhcCCeEE
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVD-------ESLGRSTAVKYNCTFH   85 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~-------~~~~~~~~~~~~~~~~   85 (173)
                      ..+.|++|||+.++.. +-++ ...++.+....+. ----+|||.+..|......+.       ......+.+..+-.|.
T Consensus        81 ~~g~ha~llVi~~~r~-t~~~-~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~~~~~l~~~~~~~l~~li~~c~~R~~  158 (212)
T PF04548_consen   81 SPGPHAFLLVIPLGRF-TEED-REVLELLQEIFGEEIWKHTIVVFTHADELEDDSLEDYLKKESNEALQELIEKCGGRYH  158 (212)
T ss_dssp             TT-ESEEEEEEETTB--SHHH-HHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTTHHHHHHHHHHHHHHHHHHHTTTCEE
T ss_pred             cCCCeEEEEEEecCcc-hHHH-HHHHHHHHHHccHHHHhHhhHHhhhccccccccHHHHHhccCchhHhHHhhhcCCEEE
Confidence            4578999999998832 2111 2223333333311 112477788887754433211       1123445566666677


Q ss_pred             EEccc------CCcccHHHHHHHHHHHHhcCC
Q psy2792          86 EVSVA------DNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        86 e~Sak------~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ....+      ... .+.+|+..+-..+.++.
T Consensus       159 ~f~n~~~~~~~~~~-qv~~Ll~~ie~mv~~n~  189 (212)
T PF04548_consen  159 VFNNKTKDKEKDES-QVSELLEKIEEMVQENG  189 (212)
T ss_dssp             ECCTTHHHHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred             EEeccccchhhhHH-HHHHHHHHHHHHHHHcC
Confidence            66665      334 78899998888877754

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PHA02518 ParA-like protein; Provisional

Probab=81.00  E-value=15  Score=26.70  Aligned_cols=59  Identities=12%  Similarity=-0.006  Sum_probs=34.7

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCC
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDL   62 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl   62 (173)
                      |+|....+....+..||.+|++...+..  .....+..++..+....  ...+ +.+|.|+.+-
T Consensus        84 ~p~~~~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~--~~~~~~~iv~n~~~~  145 (211)
T PHA02518         84 GAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVT--DGLPKFAFIISRAIK  145 (211)
T ss_pred             CCCCccHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhC--CCCceEEEEEeccCC
Confidence            4554444677788899999999987642  12333344444433322  3344 4567787653

>PRK13695 putative NTPase; Provisional

Probab=80.72  E-value=18  Score=25.80  Aligned_cols=82  Identities=12%  Similarity=0.075  Sum_probs=46.3

Q ss_pred             HhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792          10 LTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus        10 ~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      ....+.++|+  +++|=-.+  ++.. ..+.+.+.... ..+.|+|+|.||...       ......+....+...+++ 
T Consensus        90 ~~~~l~~~~~--lllDE~~~--~e~~~~~~~~~l~~~~-~~~~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~-  156 (174)
T PRK13695         90 LERALEEADV--IIIDEIGK--MELKSPKFVKAVEEVL-DSEKPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL-  156 (174)
T ss_pred             HHhccCCCCE--EEEECCCc--chhhhHHHHHHHHHHH-hCCCeEEEEECchhh-------HHHHHHHhccCCcEEEEE-
Confidence            3345567777  46672111  1111 22333343333 256899999998643       223344444455667776 


Q ss_pred             ccCCcccHHHHHHHHHHHH
Q psy2792          89 VADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~i  107 (173)
                        +.+ |-+++.+.+.+.+
T Consensus       157 --~~~-~r~~~~~~~~~~~  172 (174)
T PRK13695        157 --TPE-NRDSLPFEILNRL  172 (174)
T ss_pred             --cch-hhhhHHHHHHHHH
Confidence              455 7788988888765

>PTZ00258 GTP-binding protein; Provisional

Probab=80.62  E-value=2.5  Score=34.87  Aligned_cols=44  Identities=11%  Similarity=-0.034  Sum_probs=28.5

Q ss_pred             CCcEEEEEeCC--CCCCCccCCHHHHHHHhhhc-CCeEEEEcccCCc
Q psy2792          50 NVPVMLLANKL--DLEHLRQVDESLGRSTAVKY-NCTFHEVSVADNS   93 (173)
Q Consensus        50 ~~piilv~NK~--Dl~~~~~v~~~~~~~~~~~~-~~~~~e~Sak~g~   93 (173)
                      ..|+++|+|+.  |+.....-..+....++... +..++.+||+...
T Consensus       220 ~KP~iyv~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~  266 (390)
T PTZ00258        220 AKPMIYLVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEE  266 (390)
T ss_pred             cCCEEEEEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence            46999999999  76211111234455566666 4789999987654

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=80.34  E-value=5.2  Score=32.69  Aligned_cols=44  Identities=20%  Similarity=0.116  Sum_probs=30.8

Q ss_pred             CCCcEEEEEeCCCCCCCccCC--HHHHHHHhhhcCCeEEEEcccCCc
Q psy2792          49 NNVPVMLLANKLDLEHLRQVD--ESLGRSTAVKYNCTFHEVSVADNS   93 (173)
Q Consensus        49 ~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~~~~~~e~Sak~g~   93 (173)
                      ...|+++|+||.|...... .  .....+++...+..++.+||+-..
T Consensus       205 t~KP~lyvaN~~e~~~~~~-n~~~~~i~~~~~~~~~~vV~~sA~~E~  250 (372)
T COG0012         205 TAKPMLYVANVSEDDLANL-NEYVKRLKELAAKENAEVVPVSAAIEL  250 (372)
T ss_pred             hcCCeEEEEECCcccccch-hHHHHHHHHHhhhcCCcEEEeeHHHHH
Confidence            3579999999999754222 1  344566677777889999997443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		1e-10
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		2e-10
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		2e-10
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		2e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		2e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		2e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		2e-10
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		3e-10
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		5e-10
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		5e-10
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		2e-09
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-09
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		1e-08
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		8e-08
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		3e-07
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		1e-06
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		1e-06
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		1e-06
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-06
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-06
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-06
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		2e-06
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-06
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		2e-06
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		3e-06
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		3e-06
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-06
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		3e-06
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		4e-06
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-06
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		4e-06
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		4e-06
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		5e-06
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		6e-06
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		8e-06
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		8e-06
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		8e-06
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-06
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		9e-06
4fmc_B	171	Espg-Rab1 Complex Length = 171		1e-05
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-05
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		1e-05
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		1e-05
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		1e-05
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		2e-05
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-05
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		2e-05
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-05
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		2e-05
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		3e-05
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		3e-05
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-05
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		4e-05
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		4e-05
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		5e-05
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		5e-05
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		7e-05
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		8e-05
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		9e-05
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		9e-05
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		1e-04
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		1e-04
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-04
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		1e-04
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-04
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		2e-04
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-04
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		2e-04
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		2e-04
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-04
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		3e-04
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		3e-04
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		3e-04
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		3e-04
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		3e-04
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		3e-04
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		3e-04
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		3e-04
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		3e-04
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		3e-04
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		3e-04
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		3e-04
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		3e-04
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		4e-04
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		5e-04
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		5e-04
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		8e-04

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           DG +IVYS+ DK SF++     Q + R +   + P++L+ANK+DL HLR+V    G+  A
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 150
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLL 104
            KYN  + E S  D    + + F  L+
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           DG +IVYS+ DK SF++     Q + R +   + P++L+ANK+DL HLR+V    G+  A
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 150
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLL 104
            KYN  + E S  D    + + F  L+
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           DG +IVYS+ DK SF++     Q + R +   + P++L+ANK+DL HLR+V    G+  A
Sbjct: 91  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 150
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLL 104
            KYN  + E S  D    + + F  L+
Sbjct: 151 TKYNIPYIETSAKDPPLNVDKTFHDLV 177

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 50/87 (57%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           DG +IVYS+ DK SF++     Q + R +   + P++L+ANK+DL HLR+V    G+  A
Sbjct: 86  DGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMA 145
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLL 104
            KYN  + E S  D    + + F  L+
Sbjct: 146 TKYNIPYIETSAKDPPLNVDKTFHDLV 172

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ DK SF+ A      L+R R  ++VP++L+ NK DL   R+V    GR+ 
Sbjct: 78  GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 137
Query: 77  AVKYNCTFHEVSVA--DNSPAIYQA 99
           AV ++C F E S A   N  A+++ 
Sbjct: 138 AVVFDCKFIETSAALHHNVQALFEG 162

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ DK SF+ A      L+R R  ++VP++L+ NK DL   R+V    GR+ 
Sbjct: 78  GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 137
Query: 77  AVKYNCTFHEVSVA--DNSPAIYQA 99
           AV ++C F E S A   N  A+++ 
Sbjct: 138 AVVFDCKFIETSAALHHNVQALFEG 162

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ DK SF+ A      L+R R  ++VP++L+ NK DL   R+V    GR+ 
Sbjct: 73  GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 132
Query: 77  AVKYNCTFHEVSVA--DNSPAIYQA 99
           AV ++C F E S A   N  A+++ 
Sbjct: 133 AVVFDCKFIETSAALHHNVQALFEG 157

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ D+ SF+ A      L+R R   ++P++L+ NK DL   R+V  S GR+ 
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 77  AVKYNCTFHEVSVA 90
           AV ++C F E S A
Sbjct: 141 AVVFDCKFIETSAA 154

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ D+ SF+ A      L+R R   ++P++L+ NK DL   R+V  S GR+ 
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 140
Query: 77  AVKYNCTFHEVSVA 90
           AV ++C F E S A
Sbjct: 141 AVVFDCKFIETSAA 154

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ D+ SF+ A      L+R R   ++P++L+ NK DL   R+V  S GR+ 
Sbjct: 112 GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRAC 171
Query: 77  AVKYNCTFHEVSVA 90
           AV ++C F E S A
Sbjct: 172 AVVFDCKFIETSAA 185

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 58.5 bits (140), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%)
Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
           W +G ++VY + D+ SF+  +     L   +   NV ++L+ NK DL+H RQV    G  
Sbjct: 98  WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK 157
Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            A +  C F+E S       I + F  L  E R
Sbjct: 158 LATELACAFYECSACTGEGNITEIFYELCREVR 190

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 43/74 (58%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ D+ SF+ A      L+R R   ++P++L+ NK DL   R+V  S GR+ 
Sbjct: 81  GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAX 140
Query: 77  AVKYNCTFHEVSVA 90
           AV ++  F E S A
Sbjct: 141 AVVFDXKFIETSAA 154

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 21  IIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY 80
           +IVYS+ D+ SF+ A      L+R    ++VP++L+ NK DL   R+V    GR+ AV +
Sbjct: 82  VIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVF 141
Query: 81  NCTFHEVS 88
           +C F E S
Sbjct: 142 DCKFIETS 149

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 2/88 (2%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G ++VY +    +++     L+ L+ H A +N+ +ML+ NK DL HLR V     R+ A 
Sbjct: 80  GALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 138
Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           K N +F E S  D S  + +AF ++LTE
Sbjct: 139 KNNLSFIETSALD-STNVEEAFKNILTE 165

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G IIVY + D++SFD     +Q + R+ A+ NV  +L+ NK DL   R V    GR  
Sbjct: 82  AHGIIIVYDVTDRDSFDNVKQWIQEIDRY-AMENVNKLLVGNKCDLVSKRVVTSDEGREL 140
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A  +   F E S A N+  + QAF
Sbjct: 141 ADSHGIKFIETS-AKNAYNVEQAF 163

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G ++VY + +++SFD   + ++N++ H A  +V  M+L NK D+   RQV +
Sbjct: 73  TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSK 131
Query: 71  SLGRSTAVKYNCTFHEVSVADN 92
             G   A+ Y   F E S   N
Sbjct: 132 ERGEKLALDYGIKFMETSAKAN 153

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY + +++SFD   + ++N++ H A  +V  M+L NK D+   RQV +  G   
Sbjct: 81  AMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKL 139
Query: 77  AVKYNCTFHEVSVADN 92
           A+ Y   F E S   N
Sbjct: 140 ALDYGIKFMETSAKAN 155

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +    +++     L+ L+ H A +N+ +ML+ NK DL HLR V     R+ 
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K   +F E S  D S  +  AF  +LTE
Sbjct: 161 AEKNGLSFIETSALD-STNVEAAFQTILTE 189

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 48/84 (57%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  +E+F++  S L++ ++H + N V +ML+ NK DLE  R V    G + 
Sbjct: 94  AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMV-IMLIGNKSDLESRRDVKREEGEAF 152
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A ++   F E S A  +  + +AF
Sbjct: 153 AREHGLIFMETS-AKTACNVEEAF 175

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +    +++     L+ L+ H A +N+ +ML+ NK DL HLR V     R+ 
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K   +F E S  D S  +  AF  +LTE
Sbjct: 161 AEKNGLSFIETSALD-STNVEAAFQTILTE 189

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +    +++     L+ L+ H A +N+ +ML+ NK DL HLR V     R+ 
Sbjct: 93  AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 151
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K   +F E S  D S  +  AF  +LTE
Sbjct: 152 AEKNGLSFIETSALD-STNVEAAFQTILTE 180

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/97 (35%), Positives = 49/97 (50%), Gaps = 4/97 (4%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 89  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE--SRGGP 111
           A      F E S A N+  + Q+F  +  E   R GP
Sbjct: 148 ADSLGIPFLETS-AKNATNVEQSFMTMAAEIKKRMGP 183

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
             I+VY + +++SF+     +Q++   R   +V + L+ NK DL  LR+V    G   A 
Sbjct: 76  AAIVVYDITNRQSFENTTKWIQDILNERG-KDVIIALVGNKTDLGDLRKVTYEEGXQKAQ 134
Query: 79  KYNCTFHEVS 88
           +YN  FHE S
Sbjct: 135 EYNTXFHETS 144

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)
Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRH--RAVNNVPVMLLANKLDLEHLRQVDESLG 73
           WA   ++VYS+  ++SFD + S L+ L  H      ++P +LL NKLD+   RQV ++ G
Sbjct: 91  WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150
Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            + A ++ C F EVS   +   +   F   + E+R
Sbjct: 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/90 (35%), Positives = 48/90 (53%), Gaps = 2/90 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +    +++     L+ L+ H A +N+ +ML+ NK DL HLR V     R+ 
Sbjct: 81  AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 139
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K   +F E S  D S  +  AF  +LTE
Sbjct: 140 AEKNGLSFIETSALD-STNVEAAFQTILTE 168

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score = 48.1 bits (113), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 51/84 (60%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  +++F++  + L++ ++H + +N+ +ML+ NK DLE  R+V +  G + 
Sbjct: 83  AAGALLVYDITRRDTFNHLTTWLEDARQH-SNSNMVIMLIGNKSDLESRREVKKEEGEAF 141
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A ++   F E S A  +  + +AF
Sbjct: 142 AREHGLIFMETS-AKTASNVEEAF 164

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IV+S+ D+ SF     TL  L+  R  +++PV+L+ NK DL   R+V    GR  
Sbjct: 97  GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 156
Query: 77  AVKYNCTFHEVSVA 90
           A   +C   E S A
Sbjct: 157 AGTLSCKHIETSAA 170

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 1/87 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G ++V+S+ D+ SF+      + + R +  +  P++L+ NK DL+H RQV +  G+  A
Sbjct: 78  EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLA 137
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLL 104
            +   T+ E S A     + QAF  L+
Sbjct: 138 RQLKVTYMEAS-AKIRMNVDQAFHELV 163

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 1/94 (1%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G ++++ L +++SF    + +  LQ H    N  ++L  NK DLE  R V E
Sbjct: 88  TAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKE 147
Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
              R  A KY   + E S A N   I  A + LL
Sbjct: 148 EEARELAEKYGIPYFETSAA-NGTNISHAIEMLL 180

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 42/70 (60%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G I+VYSL++++SF         + R +    VPV+L+ NK+DLE  R+V  S GR+ A 
Sbjct: 77  GFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAE 136
Query: 79  KYNCTFHEVS 88
           ++ C F E S
Sbjct: 137 EWGCPFMETS 146

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IV+S+ D+ SF     TL  L+  R  +++PV+L+ NK DL   R+V    GR  
Sbjct: 86  GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 145
Query: 77  AVKYNCTFHEVSVA 90
           A   +C   E S A
Sbjct: 146 AGTLSCKHIETSAA 159

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 37/81 (45%)
Query: 12  AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71
           + I    G ++VYS+    SF    S  Q L        VPV+L+ NK DL   R+V   
Sbjct: 91  SFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV 150
Query: 72  LGRSTAVKYNCTFHEVSVADN 92
            G+  A  +  TF E S  +N
Sbjct: 151 EGKKLAESWGATFMESSAREN 171

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 47.0 bits (110), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IV+S+ D+ SF     TL  L+  R  +++PV+L+ NK DL   R+V    GR  
Sbjct: 76  GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHL 135
Query: 77  AVKYNCTFHEVSVA 90
           A   +C   E S A
Sbjct: 136 AGTLSCKHIETSAA 149

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 98  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 156
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A      F E S A N+  + Q+F  +  E
Sbjct: 157 ADSLGIPFLETS-AKNATNVEQSFMTMAAE 185

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 72  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 130
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A      F E S A N+  + Q+F
Sbjct: 131 ADSLGIPFLETS-AKNATNVEQSF 153

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score = 46.6 bits (109), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 89  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A      F E S A N+  + Q+F  +  E
Sbjct: 148 ADSLGIPFLETS-AKNATNVEQSFMTMAAE 176

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV     ++ A
Sbjct: 87  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 146
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
            ++N  + E S A     + + F  L+ E R 
Sbjct: 147 EQWNVNYVETS-AKTRANVDKVFFDLMREIRA 177

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 164
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A      F E S A N+  + Q+F
Sbjct: 165 ADSLGIPFLETS-AKNATNVEQSF 187

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 79  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 137
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A      F E S A N+  + Q+F
Sbjct: 138 ADSLGIPFLETS-AKNATNVEQSF 160

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 79  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 137
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A      F E S A N+  + Q+F
Sbjct: 138 ADSLGIPFLETS-AKNATNVEQSF 160

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 29/88 (32%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G ++VY +  K SF+     L+ L R  A +N+ ++L+ NK DL+HLR ++++     A 
Sbjct: 83  GALLVYDITKKNSFENIEKWLKEL-RDNADSNIVILLVGNKSDLKHLRVINDNDATQYAK 141
Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           K    F E S  + +  +  AF  LL E
Sbjct: 142 KEKLAFIETSALE-ATNVELAFHQLLNE 168

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV     ++ A
Sbjct: 79  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 138
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
            ++N  + E S A     + + F  L+ E R 
Sbjct: 139 EQWNVNYVETS-AKTRANVDKVFFDLMREIRA 169

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV     ++ A
Sbjct: 91  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 150
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
            ++N  + E S A     + + F  L+ E R 
Sbjct: 151 EQWNVNYVETS-AKTRANVDKVFFDLMREIRA 181

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV     ++ A
Sbjct: 79  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 138
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
            ++N  + E S A     + + F  L+ E R 
Sbjct: 139 EQWNVNYVETS-AKTRANVDKVFFDLMREIRA 169

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV     ++ A
Sbjct: 77  EGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRA 136
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG 109
            ++N  + E S A     + + F  L+ E R 
Sbjct: 137 DQWNVNYVETS-AKTRANVDKVFFDLMREIRA 167

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/88 (34%), Positives = 46/88 (52%), Gaps = 2/88 (2%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G ++VY +    +++     L+ L+ H A +N+ + L+ NK DL HLR V     R+ A 
Sbjct: 86  GALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIXLVGNKSDLRHLRAVPTDEARAFAE 144
Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           K   +F E S  D S  +  AF  +LTE
Sbjct: 145 KNGLSFIETSALD-STNVEAAFQTILTE 171

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ES+      LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 82  AHGIIVVYDVTDQESYANVKQWLQEIDRY-ASENVNKLLVGNKSDLTTKKVVDNTTAKEF 140
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A      F E S A N+  + QAF
Sbjct: 141 ADSLGIPFLETS-AKNATNVEQAF 163

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +    +++     L+ L+ H A +N+ + L+ NK DL HLR V     R+ 
Sbjct: 78  AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIXLVGNKSDLRHLRAVPTDEARAF 136
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K   +F E S  D S  +  AF  +LTE
Sbjct: 137 AEKNGLSFIETSALD-STNVEAAFQTILTE 165

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ES+      LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 82  AHGIIVVYDVTDQESYANVKQWLQEIDRY-ASENVNKLLVGNKSDLTTKKVVDNTTAKEF 140
Query: 77  AVKYNCTFHEVSVADNSPAIYQAF 100
           A      F E S A N+  + QAF
Sbjct: 141 ADSLGIPFLETS-AKNATNVEQAF 163

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 44.7 bits (104), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G ++++ L  ++SF    + +  LQ +    N  ++L+ NK DL   R+V+E
Sbjct: 102 TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 161
Query: 71  SLGRSTAVKYNCTFHEVSVA 90
              R  A KY   + E S A
Sbjct: 162 RQARELADKYGIPYFETSAA 181

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 48/97 (49%), Gaps = 4/97 (4%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+  K DL   + VD +  +  
Sbjct: 81  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGIKCDLTTKKVVDYTTAKEF 139
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE--SRGGP 111
           A      F E S A N+  + Q+F  +  E   R GP
Sbjct: 140 ADSLGIPFLETS-AKNATNVEQSFMTMAAEIKKRMGP 175

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G ++++ L  ++SF    + +  LQ +    N  ++L+ NK DL   R+V+E
Sbjct: 88  TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
Query: 71  SLGRSTAVKYNCTFHEVSVA 90
              R  A KY   + E S A
Sbjct: 148 RQARELAEKYGIPYFETSAA 167

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 44.3 bits (103), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G +IVY +    S++     L  L R  A +NV V L+ NK DL HLR V     ++ A 
Sbjct: 88  GALIVYDISKSSSYENCNHWLSEL-RENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ 146
Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLL 104
           +    F E S A NS  + +AF+ L+
Sbjct: 147 ENQLLFTETS-ALNSENVDKAFEELI 171

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 46/94 (48%), Gaps = 2/94 (2%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G I++Y + ++ESF+ AV       +  + +N  V+L+ NK D+E  R V  
Sbjct: 72  TAYYRGAMGFILMYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSS 130
Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
             GR  A      F E S  DN   + Q F+ L+
Sbjct: 131 ERGRQLADHLGFEFFEASAKDN-INVKQTFERLV 163

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 40/80 (50%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G ++++ L  ++SF    + +  LQ +    N  ++L+ NK DL   R+V+E
Sbjct: 88  TAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
Query: 71  SLGRSTAVKYNCTFHEVSVA 90
              R  A KY   + E S A
Sbjct: 148 RQARELAEKYGIPYFETSAA 167

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G I+ Y + ++ESF+ AV       +  + +N  V+L+ NK D E  R V  
Sbjct: 75  TAYYRGAXGFILXYDITNEESFN-AVQDWSTQIKTYSWDNAQVLLVGNKCDXEDERVVSS 133
Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
             GR  A      F E S  DN   + Q F+ L+
Sbjct: 134 ERGRQLADHLGFEFFEASAKDN-INVKQTFERLV 166

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G ++ + L  ++SF    +    LQ +    N  ++L+ NK DL   R+V+E
Sbjct: 88  TAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
Query: 71  SLGRSTAVKYNCTFHEVSVA 90
              R  A KY   + E S A
Sbjct: 148 RQARELAEKYGIPYFETSAA 167

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNN-VPVMLLANKLDLEHLRQVDESLGRS 75
            +G ++V+S+ + ESF       + + R +A  + +P++++ NK DLE  RQV     RS
Sbjct: 79  GEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARS 138
Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            A ++   + E S A     + + F  L+ E R
Sbjct: 139 KAEEWGVQYVETS-AKTRANVDKVFFDLMREIR 170

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G ++ + L  ++SF    +    LQ +    N  ++L+ NK DL   R+V+E
Sbjct: 88  TAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIVLIGNKADLPDQREVNE 147
Query: 71  SLGRSTAVKYNCTFHEVSVA 90
              R  A KY   + E S A
Sbjct: 148 RQARELAEKYGIPYFETSAA 167

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 2/92 (2%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNN-VPVMLLANKLDLEHLRQVDESLGRST 76
           +G ++V+S+ + ESF       + + R +A  + +P++++ NK DLE  RQV     RS 
Sbjct: 76  EGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSK 135
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           A ++   + E S A     + + F  L+ E R
Sbjct: 136 AEEWGVQYVETS-AKTRANVDKVFFDLMREIR 166

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           TA    A G I++Y + ++ESF+ AV       +  + +N  V+L+ NK D+E  R V  
Sbjct: 90  TAYYRGAMGFILMYDITNEESFN-AVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVPT 148
Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLL 104
             G+  A +    F E S  +N  ++ QAF+ L+
Sbjct: 149 EKGQLLAEQLGFDFFEASAKEN-ISVRQAFERLV 181

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G +IVY +    S++     L  L R  A +NV V L+ NK DL HLR V     ++ A+
Sbjct: 85  GALIVYDISKSSSYENCNHWLTEL-RENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAM 143
Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLL 104
           +    F E S A NS  + +AF  L+
Sbjct: 144 ENQMLFTETS-ALNSDNVDKAFRELI 168

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G IIVY + D+ESF+     LQ + R+ A + V  +L+ NK DL+  R V+  + +  A 
Sbjct: 83  GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 79  KYNCTFHEVSVADNSPAIYQAF 100
                F E S  D S  +  AF
Sbjct: 142 ANKMPFLETSALD-STNVEDAF 162

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 21  IIVYSLIDKESFDYAVSTLQNL--QRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           I+V+S+  K+S +  +  +  L  Q   +V ++PVML+ NK D E  R+VD    ++ A 
Sbjct: 84  ILVFSVTSKQSLE-ELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQ 141
Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLLT 105
           ++ C F E S   N   + + F  LLT
Sbjct: 142 EWKCAFMETSAKMNY-NVKELFQELLT 167

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G ++V+++ D++SF+        + R +  ++ PV+L+ NK DLE  RQV  S   +   
Sbjct: 83  GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGA 142
Query: 79  KYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            ++  + E S A     + +AF+ L+   R
Sbjct: 143 SHHVAYFEAS-AKLRLNVDEAFEQLVRAVR 171

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G IIVY + D+ESF+     LQ + R+ A + V  +L+ NK DL+  R V+  + +  A 
Sbjct: 96  GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 154
Query: 79  KYNCTFHEVSVADNSPAIYQAF 100
                F E S  D S  +  AF
Sbjct: 155 ANKMPFLETSALD-STNVEDAF 175

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/98 (28%), Positives = 52/98 (53%), Gaps = 4/98 (4%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A+G I+ Y +  + SF      +++++++ A +N+  +L+ NK DL  LR+V  +  +S 
Sbjct: 102 ANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSL 160
Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE---SRGGP 111
           A  Y+      + A +S  + +AF  + TE     GGP
Sbjct: 161 AEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP 198

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G IIVY + D+ESF+     LQ + R+ A + V  +L+ NK DL+  R V+  + +  A 
Sbjct: 83  GIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 79  KYNCTFHEVSVADNSPAIYQAF 100
                F E S  D S  +  AF
Sbjct: 142 ANKMPFLETSALD-STNVEDAF 162

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G I+VYS+   +SF+        L        +P+ML+ NK DL   R +    G++ A
Sbjct: 79  NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
             +N  F E S  +N  A+   F  ++ E+ 
Sbjct: 139 ESWNAAFLESSAKENQTAV-DVFRRIILEAE 168

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 80  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 138
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 139 ADDNSLLFXETS 150

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 79  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 138 ADDNSLLFMETS 149

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G I+VYS+   +SF+        L        +P+ML+ NK DL   R +    G++ A
Sbjct: 79  NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 138
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
             +N  F E S  +N  A+   F  ++ E+ 
Sbjct: 139 ESWNAAFLESSAKENQTAV-DVFRRIILEAE 168

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G I+VYS+   +SF+        L        +P+ML+ NK DL   R +    G++ A
Sbjct: 74  NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 133
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
             +N  F E S  +N  A+   F  ++ E+ 
Sbjct: 134 ESWNAAFLESSAKENQTAV-DVFRRIILEAE 163

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 79  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 138 ADDNSLLFMETS 149

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 79  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 138 ADDNSLLFMETS 149

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 1/91 (1%)
Query: 18  DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA 77
           +G I+VYS+   +SF+        L        +P+ML+ NK DL   R +    G++ A
Sbjct: 77  NGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALA 136
Query: 78  VKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
             +N  F E S  +N  A+   F  ++ E+ 
Sbjct: 137 ESWNAAFLESSAKENQTAV-DVFRRIILEAE 166

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 79  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 138 ADDNSLLFMETS 149

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 80  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 138
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 139 ADDNSLLFMETS 150

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 79  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 138 ADDNSLLFMETS 149

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G  +VYS+  + +F+      + + R +  ++VP++L+ NK DLE  R V +  G++ A 
Sbjct: 77  GFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLAR 136
Query: 79  KY-NCTFHEVS 88
           ++ NC F E S
Sbjct: 137 QWNNCAFLESS 147

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 79  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 137
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 138 ADDNSLLFMETS 149

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G  +VYS+  + +F+      + + R +  ++VP++L+ NK DLE  R V +  G++ A 
Sbjct: 79  GFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLAR 138
Query: 79  KY-NCTFHEVS 88
           ++ NC F E S
Sbjct: 139 QWNNCAFLESS 149

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR +A  N+ + L  NK DL + R VD    +S 
Sbjct: 78  AQAAIVVYDITNEESFARAKNWVKELQR-QASPNIVIALSGNKADLANKRAVDFQEAQSY 136
Query: 77  AVKYNCTFHEVS 88
           A   +  F E S
Sbjct: 137 ADDNSLLFMETS 148

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   +++Y + +K SFD   + L  +  + A ++V +MLL NK+D  H R V    G   
Sbjct: 84  AHALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKL 142
Query: 77  AVKYNCTFHEVS 88
           A +Y   F E S
Sbjct: 143 AKEYGLPFMETS 154

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G  +VYS+  + +F+      + + R +   +VP++L+ NK DLE  R V +  G++ A 
Sbjct: 77  GFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 136
Query: 79  KY-NCTFHEVS 88
           ++ NC F E S
Sbjct: 137 QWCNCAFLESS 147

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 19  GCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV 78
           G  +VYS+  + +F+      + + R +   +VP++L+ NK DLE  R V +  G++ A 
Sbjct: 77  GFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLAR 136
Query: 79  KY-NCTFHEVS 88
           ++ NC F E S
Sbjct: 137 QWCNCAFLESS 147

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY +  KE+FD     ++ + ++ A  +  ++L+ NKLD E  R++    G   
Sbjct: 99  AKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKF 157
Query: 77  AVKY-NCTFHEVSVADN 92
           A +     F E S  DN
Sbjct: 158 AQQITGMRFCEASAKDN 174

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	3e-27
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	5e-25
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	3e-24
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	6e-24
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	6e-24
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-23
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	3e-23
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-23
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-22
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	1e-21
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	2e-21
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-21
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-21
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	3e-21
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-21
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	8e-21
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-20
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	2e-20
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	1e-19
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	2e-19
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-19
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-19
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	3e-19
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-19
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-19
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	4e-19
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	5e-19
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	6e-19
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	7e-19
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	8e-19
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	8e-19
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-18
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-18
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	1e-18
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	2e-18
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	2e-18
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-18
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-18
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-18
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	2e-18
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	2e-18
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-18
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	5e-18
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	8e-18
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	2e-17
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	2e-17
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	3e-17
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	3e-17
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-17
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	3e-17
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	4e-17
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	7e-17
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-17
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	8e-17
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	8e-17
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	9e-17
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	9e-17
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	1e-16
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	2e-16
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	3e-16
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	6e-16
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	7e-16
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	3e-15
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-14
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	1e-14
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	2e-14
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	3e-14
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	5e-13
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-12
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	3e-10
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	2e-08
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-04
3llu_A	196	RAS-related GTP-binding protein C; structural geno	2e-04
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	4e-04
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	7e-04
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	8e-04

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  100 bits (251), Expect = 3e-27
 Identities = 30/93 (32%), Positives = 45/93 (48%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
           W +G ++VY + D+ SF+  +     L   +   NV ++L+ NK DL+H RQV    G  
Sbjct: 98  WGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEK 157

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            A +  C F+E S       I + F  L  E R
Sbjct: 158 LATELACAFYECSACTGEGNITEIFYELCREVR 190

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 94.2 bits (235), Expect = 5e-25
 Identities = 32/95 (33%), Positives = 52/95 (54%), Gaps = 2/95 (2%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLRQVDESLG 73
           WA   ++VYS+  ++SFD + S L+ L  H      ++P +LL NKLD+   RQV ++ G
Sbjct: 91  WAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEG 150

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            + A ++ C F EVS   +   +   F   + E+R
Sbjct: 151 VALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR 185

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 92.2 bits (230), Expect = 3e-24
 Identities = 34/93 (36%), Positives = 51/93 (54%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
             DG +IVYS+ DK SF++     Q + R +   + P++L+ANK+DL HLR+V    G+ 
Sbjct: 89  TGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKE 148

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            A KYN  + E S  D    + + F  L+   R
Sbjct: 149 MATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR 181

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 92.4 bits (230), Expect = 6e-24
 Identities = 32/93 (34%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
             D  +IVYS+ D+ SF+ A      L+R R   ++P++L+ NK DL   R+V  S GR+
Sbjct: 111 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRA 170

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            AV ++C F E S A     + + F+ ++ + R
Sbjct: 171 CAVVFDCKFIETSAAVQH-NVKELFEGIVRQVR 202

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 91.9 bits (229), Expect = 6e-24
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
             D  +IV+S+ D+ SF     TL  L+  R  +++PV+L+ NK DL   R+V    GR 
Sbjct: 96  TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH 155

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            A   +C   E S A +     + F+  + + R
Sbjct: 156 LAGTLSCKHIETSAALHH-NTRELFEGAVRQIR 187

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 89.5 bits (223), Expect = 2e-23
 Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 1/92 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
               +IVYS+ D+ SF+ A      L+R    ++VP++L+ NK DL   R+V    GR+ 
Sbjct: 78  GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRAC 137

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           AV ++C F E S       + + F+ ++ + R
Sbjct: 138 AVVFDCKFIETSATLQH-NVAELFEGVVRQLR 168

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 89.5 bits (223), Expect = 3e-23
 Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
             D  +IV+S+ D+ SF     TL  L+  R  +++PV+L+ NK DL   R+V    GR 
Sbjct: 75  TGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRH 134

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            A   +C   E S A +     + F+  + + R
Sbjct: 135 LAGTLSCKHIETSAALHH-NTRELFEGAVRQIR 166

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 88.7 bits (221), Expect = 5e-23
 Identities = 33/92 (35%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            D  +IVYS+ DK SF+ A      L+R R  ++VP++L+ NK DL   R+V    GR+ 
Sbjct: 73  GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRAC 132

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           AV ++C F E S A +   +   F+ ++ + R
Sbjct: 133 AVVFDCKFIETSAALHH-NVQALFEGVVRQIR 163

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 86.0 bits (214), Expect = 5e-22
 Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV     ++ 
Sbjct: 76  GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 135

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           A ++N  + E S    +  + + F  L+ E R
Sbjct: 136 ADQWNVNYVETSAKTRA-NVDKVFFDLMREIR 166

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 85.7 bits (213), Expect = 1e-21
 Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 6/102 (5%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
             G ++V+++ D++SF+        + R +  ++ PV+L+ NK DLE  RQV  S   + 
Sbjct: 81  GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAF 140

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE-----SRGGPPS 113
              ++  + E S       + +AF+ L+        +  PPS
Sbjct: 141 GASHHVAYFEASAKLRL-NVDEAFEQLVRAVRKYQEQELPPS 181

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 85.3 bits (212), Expect = 2e-21
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV     ++ 
Sbjct: 90  GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 149

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A ++N  + E S    +  + + F  L+ E
Sbjct: 150 AEQWNVNYVETSAKTRA-NVDKVFFDLMRE 178

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 85.4 bits (212), Expect = 2e-21
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
             D  +IVYS+ D+ SF+ A      L+R R   ++P++L+ NK DL   R+V  S GR+
Sbjct: 80  VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRA 139

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTK 125
            AV ++  F E S A     + + F+ ++ + R    S     R+ +  K
Sbjct: 140 XAVVFDXKFIETSAAVQH-NVKELFEGIVRQVRLRRDSKEKNERRLAYQK 188

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 84.4 bits (210), Expect = 2e-21
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
             G I+VYSL++++SF         + R +    VPV+L+ NK+DLE  R+V  S GR+ 
Sbjct: 75  GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRAL 134

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A ++ C F E S    +  + + F  ++ +
Sbjct: 135 AEEWGCPFMETSAKSKT-MVDELFAEIVRQ 163

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 84.1 bits (209), Expect = 3e-21
 Identities = 25/92 (27%), Positives = 41/92 (44%), Gaps = 1/92 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            +G I+VYS+   +SF+        L        +P+ML+ NK DL   R +    G++ 
Sbjct: 78  INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKAL 137

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           A  +N  F E S A  +      F  ++ E+ 
Sbjct: 138 AESWNAAFLESS-AKENQTAVDVFRRIILEAE 168

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 84.2 bits (209), Expect = 6e-21
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
              G ++VYS+    SF    S  Q L        VPV+L+ NK DL   R+V    G+ 
Sbjct: 95  GVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKK 154

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            A  +  TF E S A  +      F  ++ E
Sbjct: 155 LAESWGATFMESS-ARENQLTQGIFTKVIQE 184

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 83.8 bits (208), Expect = 8e-21
 Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 1/90 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV     ++ 
Sbjct: 86  GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNR 145

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A ++N  + E S    +  + + F  L+ E
Sbjct: 146 AEQWNVNYVETSAKTRA-NVDKVFFDLMRE 174

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 82.6 bits (205), Expect = 1e-20
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 2/93 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRS 75
               I+VYS+  ++S +      + +   +  V ++P+ML+ NK D    R+V  S   +
Sbjct: 75  GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEA 134

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            A  + C F E S   N   + + F  LL   +
Sbjct: 135 LARTWKCAFMETSAKLNH-NVKELFQELLNLEK 166

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 81.8 bits (203), Expect = 2e-20
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 2/92 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            +G + V+++ + +SF+      + ++R +  ++VP++L+ NK DL   R V+    +  
Sbjct: 75  GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDL 133

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           A  Y   + E S       +  AF  L+ E R
Sbjct: 134 ARSYGIPYIETSAKTRQ-GVEDAFYTLVREIR 164

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 80.2 bits (199), Expect = 1e-19
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A  C++V+S  D+ESF+   S  + +       ++P  L+ NK+DL     +        
Sbjct: 78  AQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGL 135

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F+  S       + + F +L  +
Sbjct: 136 AKRLKLRFYRTS-VKEDLNVSEVFKYLAEK 164

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 80.0 bits (198), Expect = 2e-19
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 1/90 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++++ L +++SF    + +  LQ H    N  ++L  NK DLE  R V E   R  
Sbjct: 94  AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEAREL 153

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A KY   + E S A N   I  A + LL  
Sbjct: 154 AEKYGIPYFETS-AANGTNISHAIEMLLDL 182

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 79.6 bits (197), Expect = 2e-19
 Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 2/92 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
               + VY + +  SF    + ++  ++H   N++P +L+ NK DL    QV   L +  
Sbjct: 94  VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKF 153

Query: 77  AVKYNCTFHEVS--VADNSPAIYQAFDHLLTE 106
           A  ++    E S    +++  +   F  L  +
Sbjct: 154 ADTHSMPLFETSAKNPNDNDHVEAIFMTLAHK 185

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 80.1 bits (198), Expect = 3e-19
 Identities = 32/137 (23%), Positives = 57/137 (41%), Gaps = 10/137 (7%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G +IVY +    S++     L  L+ + A +NV V L+ NK DL HLR V     ++ 
Sbjct: 86  AVGALIVYDISKSSSYENCNHWLSELREN-ADDNVAVGLIGNKSDLAHLRAVPTEESKTF 144

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNK 136
           A +    F E S  ++   + +AF+ L+          I++        +  +   G+  
Sbjct: 145 AQENQLLFTETSALNSE-NVDKAFEELINT--------IYQKVSKHQMDLGDSSANGNAN 195

Query: 137 SPPTHQGGTVVVCNKSD 153
                 G T+ +    +
Sbjct: 196 GASAPNGPTISLTPTPN 212

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 79.6 bits (197), Expect = 3e-19
 Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I++Y + ++ESF+        ++ + + +N  V+L+ NK D+E  R V    GR  
Sbjct: 81  AMGFILMYDITNEESFNAVQDWSTQIKTY-SWDNAQVLLVGNKCDMEDERVVSSERGRQL 139

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTKMLGTLIGGSNK 136
           A      F E S A ++  + Q F+ L+          I +    S+      + G    
Sbjct: 140 ADHLGFEFFEAS-AKDNINVKQTFERLVDV--------ICEKMSESLDTADPAVTGAKQG 190

Query: 137 SPPTHQGG 144
              T Q  
Sbjct: 191 PQLTDQQA 198

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 79.2 bits (196), Expect = 3e-19
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G +++Y + ++ESF         ++ + + +N  V+L+ NK DLE  R V    GR  
Sbjct: 95  AMGFLLMYDIANQESFAAVQDWATQIKTY-SWDNAQVILVGNKCDLEDERVVPAEDGRRL 153

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A      F E S A  +  + Q F+ L+  
Sbjct: 154 ADDLGFEFFEAS-AKENINVKQVFERLVDV 182

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 79.2 bits (196), Expect = 3e-19
 Identities = 28/90 (31%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   +++Y + +K SFD   + L  +  + A ++V +MLL NK+D  H R V    G   
Sbjct: 84  AHALLLLYDVTNKASFDNIQAWLTEIHEY-AQHDVALMLLGNKVDSAHERVVKREDGEKL 142

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +Y   F E S A     +  AF  +  E
Sbjct: 143 AKEYGLPFMETS-AKTGLNVDLAFTAIAKE 171

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 79.7 bits (197), Expect = 4e-19
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++++ L  ++SF    + +  LQ +    N  ++L+ NK DL   R+V+E   R  
Sbjct: 108 AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 167

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A KY   + E S A     + +A + LL  
Sbjct: 168 ADKYGIPYFETS-AATGQNVEKAVETLLDL 196

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 78.8 bits (195), Expect = 5e-19
 Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY + +++SFD   + ++N++ H A  +V  M+L NK D+   RQV +  G   
Sbjct: 81  AMGIMLVYDITNEKSFDNIRNWIRNIEEH-ASADVEKMILGNKCDVNDKRQVSKERGEKL 139

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A+ Y   F E S A  +  +  AF  L  +
Sbjct: 140 ALDYGIKFMETS-AKANINVENAFFTLARD 168

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 77.9 bits (193), Expect = 6e-19
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 2/91 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
             G  +VYS+  + +F+      + + R +   +VP++L+ NK DLE  R V +  G++ 
Sbjct: 75  GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNL 134

Query: 77  AVKY-NCTFHEVSVADNSPAIYQAFDHLLTE 106
           A ++ NC F E S       + + F  L+ +
Sbjct: 135 ARQWCNCAFLESSAKSKI-NVNEIFYDLVRQ 164

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 78.4 bits (194), Expect = 7e-19
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
             +G + V+++ + +SF       + ++R +  ++VP++L+ NK DL   R VD      
Sbjct: 92  TGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHE 150

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            A  Y   F E S       +  AF  L+ E
Sbjct: 151 LAKSYGIPFIETSAKTRQ-GVEDAFYTLVRE 180

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 78.4 bits (194), Expect = 8e-19
 Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I++Y + ++ESF+        ++ + + +N  V+L+ NK D+E  R V    G+  
Sbjct: 96  AMGFILMYDITNEESFNAVQDWATQIKTY-SWDNAQVILVGNKCDMEEERVVPTEKGQLL 154

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F E S A  + ++ QAF+ L+  
Sbjct: 155 AEQLGFDFFEAS-AKENISVRQAFERLVDA 183

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 78.0 bits (193), Expect = 8e-19
 Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 2/92 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
            +G + V+++ + +SF+      + ++R +   +VP++L+ NK DL   R VD    +  
Sbjct: 76  GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDL 134

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           A  Y   F E S       +  AF  L+ E R
Sbjct: 135 ARSYGIPFIETSAKTRQ-GVDDAFYTLVREIR 165

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 106 AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 164

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A      F E S A N+  + Q+F  +  E
Sbjct: 165 ADSLGIPFLETS-AKNATNVEQSFMTMAAE 193

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 31/90 (34%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ESF+     LQ + R+ A  NV  +L+ NK DL   + VD +  +  
Sbjct: 89  AHGIIVVYDVTDQESFNNVKQWLQEIDRY-ASENVNKLLVGNKCDLTTKKVVDYTTAKEF 147

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A      F E S A N+  + Q+F  +  E
Sbjct: 148 ADSLGIPFLETS-AKNATNVEQSFMTMAAE 176

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 78.1 bits (193), Expect = 1e-18
 Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           + G IIVY + D+ESF+     LQ + R+ A + V  +L+ NK DL+  R V+  + +  
Sbjct: 81  SHGIIIVYDVTDQESFNGVKMWLQEIDRY-ATSTVLKLLVGNKCDLKDKRVVEYDVAKEF 139

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A      F E S A +S  +  AF  +  +
Sbjct: 140 ADANKMPFLETS-ALDSTNVEDAFLTMARQ 168

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 77.6 bits (192), Expect = 2e-18
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +    +++     L+ L+ H A +N+ +ML+ NK DL HLR V     R+ 
Sbjct: 102 AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 160

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K   +F E S A +S  +  AF  +LTE
Sbjct: 161 AEKNGLSFIETS-ALDSTNVEAAFQTILTE 189

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 77.7 bits (192), Expect = 2e-18
 Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 3/110 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHR-AVNNVPVMLLANKLDLEHLRQVDESLGRS 75
               I+V+S+  K+S +      + + + + +V ++PVML+ NK D    R+VD    ++
Sbjct: 80  GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQA 138

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRKFSVTK 125
            A ++ C F E S   N   + + F  LLT       S     ++    K
Sbjct: 139 VAQEWKCAFMETSAKMNY-NVKELFQELLTLETRRNMSLNIDGKRSGKQK 187

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 77.2 bits (191), Expect = 2e-18
 Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL--EHLRQVDESLG 73
           W D  + V+SL D+ SF    +    L   R  + VP++L+  +  +   + R +D+S  
Sbjct: 85  WVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRA 144

Query: 74  RSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTE 106
           R  +     CT++E         + + F  +  +
Sbjct: 145 RKLSTDLKRCTYYETCATYGL-NVERVFQDVAQK 177

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++V+ L   +++      L+ L  H A   + VML+ NK DL   R+V     R  
Sbjct: 98  AVGALLVFDLTKHQTYAVVERWLKELYDH-AEATIVVMLVGNKSDLSQAREVPTEEARMF 156

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A      F E S A +S  +  AF+ +L E
Sbjct: 157 AENNGLLFLETS-ALDSTNVELAFETVLKE 185

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 77.3 bits (191), Expect = 2e-18
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A+  I+ Y +  +ESF      L+ ++++ A N V  +L+ NK+DL   R+V +      
Sbjct: 99  ANALILTYDITCEESFRCLPEWLREIEQY-ASNKVITVLVGNKIDLAERREVSQQRAEEF 157

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           +   +  + E S A  S  + + F  L   
Sbjct: 158 SEAQDMYYLETS-AKESDNVEKLFLDLACR 186

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 76.8 bits (190), Expect = 2e-18
 Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 3/92 (3%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLRQVDESLGR 74
           A G ++VY + + +SF+        +++    +     V L+ NK+DLEH+R +      
Sbjct: 80  AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHL 139

Query: 75  STAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
               +   + H VS A    +++  F  +  E
Sbjct: 140 RFCQENGFSSHFVS-AKTGDSVFLCFQKVAAE 170

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 76.8 bits (190), Expect = 2e-18
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 3/90 (3%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
             G I+VY +   ESF      L  + ++   ++V  +L+ NK D    + V+       
Sbjct: 82  THGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKF 139

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +      E S A  +  + + F+ +   
Sbjct: 140 AGQMGIQLFETS-AKENVNVEEMFNCITEL 168

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 76.1 bits (188), Expect = 4e-18
 Identities = 22/90 (24%), Positives = 41/90 (45%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  +E+++   + L + +   A  N+ ++L  NK DL+  R+V        
Sbjct: 83  AAGALLVYDITSRETYNALTNWLTDARML-ASQNIVIILCGNKKDLDADREVTFLEASRF 141

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F E S A     + +AF     +
Sbjct: 142 AQENELMFLETS-ALTGENVEEAFVQCARK 170

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 76.6 bits (189), Expect = 5e-18
 Identities = 33/90 (36%), Positives = 52/90 (57%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +    +++     L+ L+ H A +N+ +ML+ NK DL HLR V     R+ 
Sbjct: 78  AVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDEARAF 136

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K N +F E S A +S  + +AF ++LTE
Sbjct: 137 AEKNNLSFIETS-ALDSTNVEEAFKNILTE 165

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 75.3 bits (186), Expect = 8e-18
 Identities = 22/90 (24%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  + ++++  S L + +      N  ++L+ NK DLE  R V     +  
Sbjct: 88  AAGALMVYDITRRSTYNHLSSWLTDARNL-TNPNTVIILIGNKADLEAQRDVTYEEAKQF 146

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F E S A     +  AF     +
Sbjct: 147 AEENGLLFLEAS-AKTGENVEDAFLEAAKK 175

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 74.1 bits (183), Expect = 2e-17
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           ++G I+VY + D++SF    + ++ L++    N + + ++ NK+DLE  R V      S 
Sbjct: 79  SNGAILVYDITDEDSFQKVKNWVKELRKM-LGNEICLCIVGNKIDLEKERHVSIQEAESY 137

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A       +  S A  +  I + F  L   
Sbjct: 138 AESVGAKHYHTS-AKQNKGIEELFLDLCKR 166

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 28/90 (31%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  +E+F++  S L++ ++H + +N+ +ML+ NK DLE  R V    G + 
Sbjct: 94  AAGALLVYDITRRETFNHLTSWLEDARQH-SSSNMVIMLIGNKSDLESRRDVKREEGEAF 152

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A ++   F E S A  +  + +AF +   E
Sbjct: 153 AREHGLIFMETS-AKTACNVEEAFINTAKE 181

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 74.1 bits (183), Expect = 3e-17
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   IIV+ + ++ SF+ A   +Q LQ      N+ + L  NK DL   R+V     ++ 
Sbjct: 85  AAAAIIVFDVTNQASFERAKKWVQELQAQ-GNPNMVMALAGNKSDLLDARKVTAEDAQTY 143

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F E S A  +  + + F  +   
Sbjct: 144 AQENGLFFMETS-AKTATNVKEIFYEIARR 172

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 74.7 bits (184), Expect = 3e-17
 Identities = 18/90 (20%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+ + +  + +       ++  Q     N  P+++ ANK+D+++ +++ + L    
Sbjct: 85  ASGAILFFDVTSRITCQNLARWVKEFQAV-VGNEAPIVVCANKIDIKNRQKISKKLVMEV 143

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
               N  + E+S A  +      F HL   
Sbjct: 144 LKGKNYEYFEIS-AKTAHNFGLPFLHLARI 172

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 74.2 bits (183), Expect = 3e-17
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++VY +  +E+++   + L + +   A  N+ V+L  NK DL+  R+V        
Sbjct: 98  AAGALLVYDITSRETYNSLAAWLTDARTL-ASPNIVVILCGNKKDLDPEREVTFLEASRF 156

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F E S A     + +AF      
Sbjct: 157 AQENELMFLETS-ALTGENVEEAFLKCART 185

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 73.7 bits (182), Expect = 3e-17
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+VY + ++ESF  A + ++ LQR  A  N+ + L  NK DL + R VD    +S 
Sbjct: 79  AQAAIVVYDITNEESFARAKNWVKELQRQ-ASPNIVIALSGNKADLANKRAVDFQEAQSY 137

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A   +  F E S A  S  + + F  +  +
Sbjct: 138 ADDNSLLFMETS-AKTSMNVNEIFMAIAKK 166

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 73.4 bits (181), Expect = 4e-17
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           +   ++VY + +  SF      + +++  R  ++V +ML+ NK DL   RQV    G   
Sbjct: 87  STVAVVVYDITNTNSFHQTSKWIDDVRTERG-SDVIIMLVGNKTDLSDKRQVSTEEGERK 145

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A + N  F E S A     + Q F  +   
Sbjct: 146 AKELNVMFIETS-AKAGYNVKQLFRRVAAA 174

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 73.4 bits (181), Expect = 7e-17
 Identities = 21/90 (23%), Positives = 39/90 (43%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           +   +IVY +  ++SF      ++ L+ H    N+ + +  NK DL  +R+V     +  
Sbjct: 96  SAAAVIVYDITKQDSFYTLKKWVKELKEHGP-ENIVMAIAGNKCDLSDIREVPLKDAKEY 154

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A        E S A N+  I + F  +  +
Sbjct: 155 AESIGAIVVETS-AKNAINIEELFQGISRQ 183

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 73.5 bits (181), Expect = 7e-17
 Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 8/96 (8%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL------RQVDE 70
           ADG +++Y +  ++SF      +  ++   A   VP+ML+ NK D+         + V  
Sbjct: 101 ADGVLLLYDVTCEKSFLNIREWVDMIEDA-AHETVPIMLVGNKADIRDTAATEGQKCVPG 159

Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
             G   A+ Y   F E S A +   I +A  HL  E
Sbjct: 160 HFGEKLAMTYGALFCETS-AKDGSNIVEAVLHLARE 194

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 72.5 bits (179), Expect = 8e-17
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           +   IIVY +  +E+F    + ++ L++H    ++ V +  NK DL  +R+V E   +  
Sbjct: 79  SAAAIIVYDITKEETFSTLKNWVRELRQH-GPPSIVVAIAGNKCDLTDVREVMERDAKDY 137

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A   +  F E S A N+  I + F  +   
Sbjct: 138 ADSIHAIFVETS-AKNAININELFIEISRR 166

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 73.5 bits (181), Expect = 8e-17
 Identities = 24/90 (26%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           +   ++VY + +  SF      + +++  R  ++V +ML+ NK DL   RQV    G   
Sbjct: 89  STVAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEGERK 147

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A + N  F E S A     + Q F  +   
Sbjct: 148 AKELNVMFIETS-AKAGYNVKQLFRRVAAA 176

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 73.1 bits (180), Expect = 9e-17
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY +  +++F    + L  L+ +   N++  ML+ NK+D E+ R+VD + G   
Sbjct: 88  AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN-REVDRNEGLKF 146

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A K++  F E S A     +  AF+ L+ +
Sbjct: 147 ARKHSMLFIEAS-AKTCDGVQCAFEELVEK 175

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 73.0 bits (180), Expect = 9e-17
 Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 3/91 (3%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY +  KE+FD     ++ + ++ A  +  ++L+ NKLD E  R++    G   
Sbjct: 99  AKGIILVYDITKKETFDDLPKWMKMIDKY-ASEDAELLLVGNKLDCETDREITRQQGEKF 157

Query: 77  AVKYN-CTFHEVSVADNSPAIYQAFDHLLTE 106
           A +     F E S A ++  + + F  L+ +
Sbjct: 158 AQQITGMRFCEAS-AKDNFNVDEIFLKLVDD 187

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 71.8 bits (177), Expect = 1e-16
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ +F       + +  H A +   ++L+ NK D+E  R V    G + 
Sbjct: 76  AMGIILVYDITDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDME-TRVVTADQGEAL 133

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F E S A N   + + F  L   
Sbjct: 134 AKELGIPFIESS-AKNDDNVNEIFFTLAKL 162

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 72.3 bits (178), Expect = 2e-16
 Identities = 27/91 (29%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A+G I+ Y +  + SF      +++++++ A +N+  +L+ NK DL  LR+V  +  +S 
Sbjct: 102 ANGAILAYDITKRSSFLSVPHWIEDVRKY-AGSNIVQLLIGNKSDLSELREVSLAEAQSL 160

Query: 77  AVKYNC-TFHEVSVADNSPAIYQAFDHLLTE 106
           A  Y+     E S A +S  + +AF  + TE
Sbjct: 161 AEHYDILCAIETS-AKDSSNVEEAFLRVATE 190

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 72.0 bits (177), Expect = 3e-16
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 3/90 (3%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G I+VY + D+ +F       + +  H A +   ++L+ NK D+E  R V    G + 
Sbjct: 93  AMGIILVYDVTDERTFTNIKQWFKTVNEH-ANDEAQLLLVGNKSDME-TRVVTADQGEAL 150

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A +    F E S A N   + + F  L   
Sbjct: 151 AKELGIPFIESS-AKNDDNVNEIFFTLAKL 179

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 71.2 bits (175), Expect = 6e-16
 Identities = 22/93 (23%), Positives = 36/93 (38%), Gaps = 3/93 (3%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHR--AVNNVPVMLLANKLDLEHLR-QVDESLG 73
               I+V+ +   ESF+   +  + L+  R      +  +L+ANK DL   R QV   + 
Sbjct: 97  VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMA 156

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           +  A      F +VS           F  + T 
Sbjct: 157 QDWATTNTLDFFDVSANPPGKDADAPFLSIATT 189

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 70.8 bits (174), Expect = 7e-16
 Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 4/93 (4%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKLDLEHLRQVDESLG 73
           AD C++V+ +    +F    S           R   N P ++L NK+DLE+ +   +   
Sbjct: 81  ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQ 140

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
                K N  + E S A  +  + QAF  +   
Sbjct: 141 AWCYSKNNIPYFETS-AKEAINVEQAFQTIARN 172

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 68.8 bits (169), Expect = 3e-15
 Identities = 23/95 (24%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKLDLEHL-RQVDESL 72
           AD C++VY + +  SF+   S       H    +    P ++L NK+D E   + V E  
Sbjct: 82  ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS 141

Query: 73  GRSTAVKY-NCTFHEVSVADNSPAIYQAFDHLLTE 106
            +  A    +      S A N+  +  AF+ +   
Sbjct: 142 AQELAKSLGDIPLFLTS-AKNAINVDTAFEEIARS 175

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 67.9 bits (166), Expect = 1e-14
 Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 5/90 (5%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   I+V+ + +  + D A + +  L+     +N  ++L+ANK+D     QVD    +  
Sbjct: 117 ATCAIVVFDISNSNTLDRAKTWVNQLKIS---SNYIIILVANKIDKNK-FQVDILEVQKY 172

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A   N  F + S A     I   F  L  E
Sbjct: 173 AQDNNLLFIQTS-AKTGTNIKNIFYMLAEE 201

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 67.2 bits (165), Expect = 1e-14
 Identities = 19/94 (20%), Positives = 43/94 (45%), Gaps = 6/94 (6%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRH---RAVNNVPVMLLANKLDLEHLRQVDESLG 73
           +D C++ +S+ D +SF    +  +    +   +   + P ++L NK+D+   RQV     
Sbjct: 80  SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEA 138

Query: 74  RSTAVKY-NCTFHEVSVADNSPAIYQAFDHLLTE 106
           ++      +  + E S A ++  +  AF+  +  
Sbjct: 139 QAWCRDNGDYPYFETS-AKDATNVAAAFEEAVRR 171

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 66.5 bits (163), Expect = 2e-14
 Identities = 19/82 (23%), Positives = 32/82 (39%), Gaps = 5/82 (6%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVN--NVPVML--LANKLDLEHLRQVDES 71
           WAD  I V+SL D+ SF         L   R      + + L    +++     R V ++
Sbjct: 72  WADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDA 131

Query: 72  LGRS-TAVKYNCTFHEVSVADN 92
             R+  A    C+++E      
Sbjct: 132 RARALXADMKRCSYYETXATYG 153

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 17/90 (18%), Positives = 42/90 (46%), Gaps = 5/90 (5%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A   II++ +  + ++    +  ++L R     N+P++L  NK+D++  +   +      
Sbjct: 88  AQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVKAK--SIVF 143

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
             K N  ++++S A ++    + F  L  +
Sbjct: 144 HRKKNLQYYDIS-AKSNYNFEKPFLWLARK 172

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 64.3 bits (156), Expect = 5e-13
 Identities = 20/91 (21%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 18  DGCIIVY--SLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
           DG ++    S     +FD  +  + NL    A    P++++  K D    R + ++   +
Sbjct: 164 DGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFA 223

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            + K N    E S   N   +  AF  L+  
Sbjct: 224 LS-KKNLQVVETSARSNV-NVDLAFSTLVQL 252

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 62.3 bits (151), Expect = 4e-12
 Identities = 12/97 (12%), Positives = 33/97 (34%), Gaps = 6/97 (6%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
            +   +++    D  +       L++++++      PV+++ NK+D      +++     
Sbjct: 121 RSSVYMLLL---DSRTDSNKHYWLRHIEKY--GGKSPVIVVMNKIDENPSYNIEQKKINE 175

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112
                   FH +S   N   +      L +       
Sbjct: 176 RFPAIENRFHRIS-CKNGDGVESIAKSLKSAVLHPDS 211

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 17  ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQ---VDESL 72
               + VY L   ++   A+   L N++     ++ PV+L+   LD+   +Q       +
Sbjct: 80  RALYLAVYDLSKGQAEVDAMKPWLFNIKAR--ASSSPVILVGTHLDVSDEKQRKACMSKI 137

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            +    K            N+     A   L   
Sbjct: 138 TKELLNKRGFPAIRDYHFVNATEESDALAKLRKT 171

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 5/93 (5%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL---RQVDESLG 73
           A   ++VY +   +SF  A   ++ L    +  ++ + L+ NK+D       R+V    G
Sbjct: 76  AQAALVVYDVTKPQSFIKARHWVKELHEQAS-KDIIIALVGNKIDXLQEGGERKVAREEG 134

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
              A +    F E S       +   F  +  +
Sbjct: 135 EKLAEEKGLLFFETSAKTGE-NVNDVFLGIGEK 166

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 21/82 (25%), Positives = 37/82 (45%), Gaps = 12/82 (14%)

Query: 17  ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDL--------EHLRQ 67
           AD  ++ +SLI K S++  +   +  L+R     NVP++L+  KLDL        +H   
Sbjct: 81  ADIFVLAFSLISKASYENVLKKWMPELRRFAP--NVPIVLVGTKLDLRDDKGYLADHTNV 138

Query: 68  VDESLGRSTAVKYNC-TFHEVS 88
           +  + G     +     + E S
Sbjct: 139 ITSTQGEELRKQIGAAAYIECS 160

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 17/102 (16%)

Query: 17  ADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL-----------E 63
               I V    D   E+      T+    +     ++   +  +K+D            +
Sbjct: 96  TGALIYVIDAQDDYMEALTRLHITVSKAYKVNP--DMNFEVFIHKVDGLSDDHKIETQRD 153

Query: 64  HLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLT 105
             ++ ++ L  +   K + +F+  S+ D+S  I++AF  ++ 
Sbjct: 154 IHQRANDDLADAGLEKLHLSFYLTSIYDHS--IFEAFSKVVQ 193

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 38.5 bits (90), Expect = 4e-04
 Identities = 14/76 (18%), Positives = 34/76 (44%), Gaps = 6/76 (7%)

Query: 17  ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDL--EHLRQVDESLG 73
           +D  ++ +++ ++ SFD   +     ++ +  ++    +L+  K+DL  +    V +  G
Sbjct: 95  SDVVLLCFAVNNRTSFDNISTKWEPEIKHY--IDTAKTVLVGLKVDLRKDGSDDVTKQEG 152

Query: 74  RSTAVKYNC-TFHEVS 88
                K  C  + E S
Sbjct: 153 DDLCQKLGCVAYIEAS 168

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 37.5 bits (87), Expect = 7e-04
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 17  ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL--- 72
           +D  ++ + +   E+ D A+      +  +    +  V+L+  K DL         L   
Sbjct: 99  SDAVLLCFDISRPETVDSALKKWRTEILDYCP--STRVLLIGCKTDLRTDLSTLMELSHQ 156

Query: 73  ---------GRSTAVKYNC-TFHEVSVADNSPAIYQAFD 101
                    G + A +     + E S   +  +I+  F 
Sbjct: 157 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFR 195

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 17  ADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR 74
           A   ++ + +    SFD   +     +        VP++++  K DL   + +   L R
Sbjct: 106 ASVLLLCFDVTSPNSFDNIFNRWYPEVNHF--CKKVPIIVVGCKTDLRKDKSLVNKLRR 162

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.95
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.89
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.89
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.88
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.88
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.88
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.88
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.88
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.87
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.87
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.87
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.87
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.87
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.87
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.87
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.87
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.87
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.87
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.87
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.86
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.86
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.86
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.86
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.86
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.86
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.86
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.86
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.86
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.86
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.86
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.86
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.86
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.86
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.86
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.86
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.86
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.86
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.86
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.85
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.85
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.85
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.85
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.85
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.85
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.85
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.85
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.85
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.85
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.85
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.85
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.85
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.85
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.85
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.85
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.84
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.84
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.84
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.84
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.84
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.84
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.84
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.84
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.84
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.84
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.84
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.84
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.83
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.83
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.83
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.83
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.83
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.83
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.83
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.82
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.82
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.82
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.82
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.82
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.82
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.82
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.81
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.81
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.81
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.81
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.81
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.8
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.8
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.8
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.8
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.8
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.79
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.78
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.78
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.78
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.77
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.77
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.63
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.76
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.75
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.74
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.73
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.73
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.72
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.72
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.71
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.7
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.7
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.7
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.69
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.69
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.68
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.65
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.64
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.63
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.63
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.62
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.61
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.61
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.61
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.58
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.57
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.52
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.5
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.5
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.5
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.49
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.49
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.47
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.46
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.45
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.44
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.43
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.42
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.42
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.42
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.42
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.41
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.37
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.36
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.35
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.35
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.34
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.3
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.29
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.29
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.26
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.25
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.24
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.22
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.22
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.21
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.21
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.19
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.19
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.18
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.18
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.18
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.16
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.14
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.13
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.13
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.1
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.09
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.09
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.07
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.07
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.06
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.06
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.04
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.04
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.02
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	98.99
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	98.98
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	98.97
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	98.96
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	98.94
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	98.87
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.86
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.86
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.85
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.8
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	98.78
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	98.77
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.77
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.77
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.74
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.71
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	98.69
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.69
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.65
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	98.63
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	98.63
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.62
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	98.6
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.59
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.49
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.48
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.44
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	98.39
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.37
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.35
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.26
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.12
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.08
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.06
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.02
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.01
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.0
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	97.99
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	97.96
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	97.6
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	97.23
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	95.88
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	91.33
3end_A	307	Light-independent protochlorophyllide reductase ir	90.47
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	89.91
3cwq_A	209	Para family chromosome partitioning protein; alpha	89.77
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	88.49
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	83.07
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	82.48
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	81.73
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	81.08
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	80.02

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.95  E-value=5.3e-28  Score=181.10  Aligned_cols=107  Identities=26%  Similarity=0.356  Sum_probs=99.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||+|++  +++.||+++|++|+|||+++++||+.+..|+..+.... .+++|+||||||+||.+.+.|+.+++..++..
T Consensus        69 taGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~-~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~  147 (216)
T 4dkx_A           69 TAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE  147 (216)
T ss_dssp             CSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhc-CCCCeEEEEeeccchHhcCcccHHHHhhHHHH
Confidence            8999985  99999999999999999999999999999999998876 47899999999999998899999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +++.|+||||++|. ||+++|+.|++.+...
T Consensus       148 ~~~~~~e~SAktg~-nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          148 LNVMFIETSAKAGY-NVKQLFRRVAAALPGM  177 (216)
T ss_dssp             HTCEEEEEBTTTTB-SHHHHHHHHHHHC---
T ss_pred             hCCeeEEEeCCCCc-CHHHHHHHHHHHHHhh
Confidence            99999999999999 9999999999988753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.89  E-value=2.9e-22  Score=147.12  Aligned_cols=107  Identities=27%  Similarity=0.348  Sum_probs=97.3

Q ss_pred             CCCCCCc---cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|+++.   ++..|++++|++|+|||++++.+|+.+..|+.++.......++|++|||||+|+.+.+.++.+++..++.
T Consensus        79 t~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~a~  158 (195)
T 3cbq_A           79 IWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG  158 (195)
T ss_dssp             CCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHHHHHHHHH
T ss_pred             cCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHHHHHHHHH
Confidence            7899862   7788999999999999999999999999999998876533579999999999998878888999999999


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++.|++|||++|. ||+++|++|++.+.+
T Consensus       159 ~~~~~~~e~Sa~~~~-~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          159 TLSCKHIETSAALHH-NTRELFEGAVRQIRL  188 (195)
T ss_dssp             HTTCEEEEEBTTTTB-SHHHHHHHHHHHHHT
T ss_pred             HhCCEEEEEcCCCCC-CHHHHHHHHHHHHHH
Confidence            999999999999999 999999999998875

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.89  E-value=2.5e-22  Score=144.80  Aligned_cols=109  Identities=26%  Similarity=0.323  Sum_probs=97.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+..|+.++.......++|++||+||+|+.+.+.+..+++..++..
T Consensus        61 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  140 (181)
T 3t5g_A           61 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES  140 (181)
T ss_dssp             CCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceecHHHHHHHHHH
Confidence            7999884  88899999999999999999999999999999998775446899999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +++.|+++||++|. ||+++|.+|++.+.+..
T Consensus       141 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~~~  171 (181)
T 3t5g_A          141 WNAAFLESSAKENQ-TAVDVFRRIILEAEKMD  171 (181)
T ss_dssp             TTCEEEECCTTSHH-HHHHHHHHHHHHHHTC-
T ss_pred             hCCcEEEEecCCCC-CHHHHHHHHHHHHHHhc
Confidence            99999999999999 99999999999988743

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=1.4e-22  Score=150.99  Aligned_cols=107  Identities=30%  Similarity=0.444  Sum_probs=94.8

Q ss_pred             CCCCCC---ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTE---GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~---~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|++.   .+...|++.+|++|+|||+++++||+.+..|+..+.......++|+||||||+||.+.+.+..+++..++.
T Consensus        94 t~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~  173 (211)
T 2g3y_A           94 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAV  173 (211)
T ss_dssp             CTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             cCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHHHHHHHHH
Confidence            778775   37788999999999999999999999999999888764323579999999999998778888888888998


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++.|++|||++|. ||+++|++|++.+..
T Consensus       174 ~~~~~~~e~SAk~g~-~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          174 VFDCKFIETSAAVQH-NVKELFEGIVRQVRL  203 (211)
T ss_dssp             HHTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             HcCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            899999999999999 999999999998854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.88  E-value=4e-22  Score=141.59  Aligned_cols=107  Identities=32%  Similarity=0.474  Sum_probs=85.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus        56 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  135 (166)
T 3q72_A           56 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV  135 (166)
T ss_dssp             CC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHHHHHHHHH
T ss_pred             CCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999988765446899999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++|||++|. ||+++|++|++.+.+
T Consensus       136 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          136 FDCKFIETSAALHH-NVQALFEGVVRQIRL  164 (166)
T ss_dssp             TTCEEEECBGGGTB-SHHHHHHHHHHHHHH
T ss_pred             hCCcEEEeccCCCC-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999988764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.88  E-value=3.8e-22  Score=142.09  Aligned_cols=107  Identities=27%  Similarity=0.350  Sum_probs=94.7

Q ss_pred             CCCCCCc---cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|+++.   ++..|++++|++|+|||++++++|+.+..|+.++.......++|+++|+||+|+.+.+.+..+++..++.
T Consensus        58 ~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  137 (169)
T 3q85_A           58 IWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG  137 (169)
T ss_dssp             CCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             CCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCCHHHHHHHHH
Confidence            7899873   7788999999999999999999999999999999887644589999999999998888899999999999


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++.|+++||++|. ||+++|++|++.+..
T Consensus       138 ~~~~~~~~~Sa~~~~-~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          138 TLSCKHIETSAALHH-NTRELFEGAVRQIRL  167 (169)
T ss_dssp             HTTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             HcCCcEEEecCccCC-CHHHHHHHHHHHHHh
Confidence            999999999999999 999999999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.88  E-value=5.7e-22  Score=143.15  Aligned_cols=107  Identities=34%  Similarity=0.476  Sum_probs=98.6

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus        73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~  152 (183)
T 3kkq_A           73 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK  152 (183)
T ss_dssp             CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcCHHHHHHHHHH
Confidence            789987  388999999999999999999999999999999998765457899999999999988888999999999999


Q ss_pred             cCCeEEEEccc-CCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVA-DNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak-~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|+++||+ +|. ||+++|++|++.+.+
T Consensus       153 ~~~~~~~~Sa~~~~~-~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          153 YNIPYIETSAKDPPL-NVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             HTCCEEEEBCSSSCB-SHHHHHHHHHHHHHH
T ss_pred             hCCeEEEeccCCCCC-CHHHHHHHHHHHHhh
Confidence            99999999999 999 999999999988764

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.88  E-value=4.1e-22  Score=146.49  Aligned_cols=111  Identities=30%  Similarity=0.364  Sum_probs=96.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+...+.+..+++..++..
T Consensus        79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  158 (201)
T 3oes_A           79 TAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES  158 (201)
T ss_dssp             ECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHHHHHHHHHH
Confidence            7899874  88999999999999999999999999999999998775446799999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      .++.|+++||++|. ||+++|.+|++.+.+....
T Consensus       159 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          159 WGATFMESSARENQ-LTQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             HTCEEEECCTTCHH-HHHHHHHHHHHHHHHC---
T ss_pred             hCCeEEEEeCCCCC-CHHHHHHHHHHHHHhhhhh
Confidence            99999999999999 9999999999999875444

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.87  E-value=6.1e-22  Score=143.00  Aligned_cols=106  Identities=30%  Similarity=0.410  Sum_probs=86.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  142 (183)
T 2fu5_C           64 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALD  142 (183)
T ss_dssp             C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH
T ss_pred             CCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECccCCccCcCCHHHHHHHHHH
Confidence            7898874  78899999999999999999999999999999998764 35799999999999988788888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+++|||++|. ||+++|.+|++.+.+
T Consensus       143 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          143 YGIKFMETSAKANI-NVENAFFTLARDIKA  171 (183)
T ss_dssp             HTCEEEECCC---C-CHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.87  E-value=4.8e-22  Score=147.92  Aligned_cols=107  Identities=16%  Similarity=0.116  Sum_probs=96.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHH-HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDY-AVSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~-~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+. +..|+..+....  +++|++|||||+|+.+.            +
T Consensus        82 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  159 (214)
T 3q3j_B           82 TSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC--PSTRVLLIGCKTDLRTDLSTLMELSHQKQA  159 (214)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC--TTSEEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred             CCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccchhhhhhhcccccC
Confidence            7899874  88999999999999999999999999 688999998875  68999999999999753            6


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCccc-HHHHHHHHHHHHhcCC
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPA-IYQAFDHLLTESRGGP  111 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~-v~~lf~~l~~~i~~~~  111 (173)
                      .+..+++..++..+++ .|++|||++|. | |+++|++|++.+.+..
T Consensus       160 ~v~~~~~~~~~~~~~~~~~~e~SA~~g~-g~v~~lf~~l~~~~~~~~  205 (214)
T 3q3j_B          160 PISYEQGCAIAKQLGAEIYLEGSAFTSE-KSIHSIFRTASMLCLNKP  205 (214)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCH-HHHHHHHHHHHHHHHC--
T ss_pred             ccCHHHHHHHHHHcCCCEEEEeccCCCc-ccHHHHHHHHHHHHhccC
Confidence            7889999999999998 89999999999 9 9999999999988743

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.87  E-value=8.3e-22  Score=145.15  Aligned_cols=106  Identities=26%  Similarity=0.309  Sum_probs=97.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~  163 (201)
T 2hup_A           85 TAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYA-GSNIVQLLIGNKSDLSELREVSLAEAQSLAEH  163 (201)
T ss_dssp             CTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence            8999884  88899999999999999999999999999999998765 46799999999999987788889999999999


Q ss_pred             cCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++ .+++|||++|. ||+++|.+|++.+.+
T Consensus       164 ~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          164 YDILCAIETSAKDSS-NVEEAFLRVATELIM  193 (201)
T ss_dssp             TTCSEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            998 89999999999 999999999998875

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.87  E-value=1.6e-21  Score=139.46  Aligned_cols=107  Identities=28%  Similarity=0.448  Sum_probs=90.4

Q ss_pred             CCCCCC--c--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTE--G--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~--~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|+++  .  +...|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~  138 (175)
T 2nzj_A           59 TWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACA  138 (175)
T ss_dssp             CC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHHHHHHHH
T ss_pred             cCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHHHHHHHH
Confidence            788876  2  678899999999999999999999999999998887643357999999999999887888888888999


Q ss_pred             hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..+++.+++|||++|. ||+++|++|++.+.+
T Consensus       139 ~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~  169 (175)
T 2nzj_A          139 VVFDCKFIETSATLQH-NVAELFEGVVRQLRL  169 (175)
T ss_dssp             HHHTSEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             HHcCCeEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence            8899999999999999 999999999998865

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.87  E-value=1.1e-21  Score=142.79  Aligned_cols=104  Identities=22%  Similarity=0.386  Sum_probs=92.9

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC--CCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE--HLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++..   |++++|++|+|||++++.+|+.+..|+..+.......++|++|||||+|+.  ..+.++.+++..++..
T Consensus        74 t~G~~~~~---~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~  150 (184)
T 3ihw_A           74 EGGPPELQ---FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTD  150 (184)
T ss_dssp             CSSSCCHH---HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHH
T ss_pred             CCCChhhh---eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHH
Confidence            78887644   899999999999999999999999999999886533579999999999993  5678889999999999


Q ss_pred             cC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YN-CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++ +.|++|||++|. ||+++|++|++.+.+
T Consensus       151 ~~~~~~~e~Sa~~~~-gv~~lf~~l~~~i~~  180 (184)
T 3ihw_A          151 LKRCTYYETCATYGL-NVERVFQDVAQKVVA  180 (184)
T ss_dssp             TTTCEEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred             cCCCeEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence            87 899999999999 999999999998875

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.87  E-value=2.1e-21  Score=142.16  Aligned_cols=107  Identities=29%  Similarity=0.401  Sum_probs=93.4

Q ss_pred             CCCCCC---ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTE---GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~---~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|++.   .+...|++.+|++|+|||+++++||+.+..|+..+.......++|+++|+||+|+...+.+..+++..++.
T Consensus        63 t~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~~~~~~a~  142 (192)
T 2cjw_A           63 MWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAV  142 (192)
T ss_dssp             CCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             eccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHHHHHHHHH
Confidence            666654   48889999999999999999999999999999888775433579999999999998777888888888888


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++.|++|||++|. ||+++|++|++.+..
T Consensus       143 ~~~~~~~e~SA~~g~-~v~~lf~~l~~~~~~  172 (192)
T 2cjw_A          143 VFDXKFIETSAAVQH-NVKELFEGIVRQVRL  172 (192)
T ss_dssp             HTTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             HhCCceEEeccccCC-CHHHHHHHHHHHHHh
Confidence            889999999999999 999999999998864

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.87  E-value=2e-21  Score=137.56  Aligned_cols=107  Identities=27%  Similarity=0.388  Sum_probs=95.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.+++..+++..++..
T Consensus        59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  138 (168)
T 1u8z_A           59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ  138 (168)
T ss_dssp             CCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999998877445899999999999987778888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. ||+++|++|++.+.+
T Consensus       139 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          139 WNVNYVETSAKTRA-NVDKVFFDLMREIRA  167 (168)
T ss_dssp             HTCEEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred             cCCeEEEeCCCCCC-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.87  E-value=2.1e-21  Score=139.34  Aligned_cols=109  Identities=25%  Similarity=0.358  Sum_probs=95.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCc-EEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVP-VMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+..|+..+..... ..+.| ++||+||+|+.+.+.+..+++..++
T Consensus        63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~  142 (178)
T 2hxs_A           63 IGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC  142 (178)
T ss_dssp             CTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSCHHHHHHHH
T ss_pred             CCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccCHHHHHHHH
Confidence            8999884  889999999999999999999999999999998877531 02455 8999999999877788888999999


Q ss_pred             hhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ..+++.++++||++|. ||+++|++|++.+.+..
T Consensus       143 ~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~~  175 (178)
T 2hxs_A          143 QENGFSSHFVSAKTGD-SVFLCFQKVAAEILGIK  175 (178)
T ss_dssp             HHHTCEEEEECTTTCT-THHHHHHHHHHHHTTCC
T ss_pred             HHcCCcEEEEeCCCCC-CHHHHHHHHHHHHHhhh
Confidence            9999999999999999 99999999999887643

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.87  E-value=2.5e-21  Score=137.24  Aligned_cols=106  Identities=25%  Similarity=0.411  Sum_probs=96.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus        58 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  137 (167)
T 1c1y_A           58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ  137 (167)
T ss_dssp             ECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999988875446899999999999988788888899999988


Q ss_pred             c-CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 Y-NCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      + ++.++++||++|. |++++|++|++.+.
T Consensus       138 ~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          138 WCNCAFLESSAKSKI-NVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTSCEEEECBTTTTB-SHHHHHHHHHHHHT
T ss_pred             ccCCcEEEecCCCCC-CHHHHHHHHHHHHh
Confidence            7 7899999999999 99999999998764

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.87  E-value=2.6e-21  Score=138.85  Aligned_cols=107  Identities=25%  Similarity=0.368  Sum_probs=97.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus        64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  143 (181)
T 2fn4_A           64 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS  143 (181)
T ss_dssp             CCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence            7999874  88999999999999999999999999999999986655456899999999999988788888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|++|.+.+.+
T Consensus       144 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~  172 (181)
T 2fn4_A          144 HHVAYFEASAKLRL-NVDEAFEQLVRAVRK  172 (181)
T ss_dssp             TTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCeEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.87  E-value=1.3e-21  Score=142.45  Aligned_cols=107  Identities=33%  Similarity=0.539  Sum_probs=92.9

Q ss_pred             CCCCCCc-cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG-TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~-~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|++++ ....|++++|++|+|||++++++|+.+..|+..+.....  ..++|++|||||+|+.+.+.++.+++..++.
T Consensus        76 t~G~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~  155 (187)
T 3c5c_A           76 TADLDTPRNCERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG  155 (187)
T ss_dssp             CCC---CCCTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSCHHHHHHHHH
T ss_pred             CCCCCcchhHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccCHHHHHHHHH
Confidence            7899874 236799999999999999999999999999999887641  2579999999999998878899999999999


Q ss_pred             hcCCeEEEEcc-cCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSV-ADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sa-k~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++.|++||| ++|. ||+++|+.|++.+.+
T Consensus       156 ~~~~~~~e~Sa~~~g~-gv~~lf~~l~~~i~~  186 (187)
T 3c5c_A          156 RFGCLFFEVSACLDFE-HVQHVFHEAVREARR  186 (187)
T ss_dssp             HHTCEEEECCSSSCSH-HHHHHHHHHHHHHHC
T ss_pred             HcCCcEEEEeecCccc-cHHHHHHHHHHHHhh
Confidence            99999999999 8999 999999999988764

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.86  E-value=3.9e-21  Score=138.12  Aligned_cols=104  Identities=19%  Similarity=0.339  Sum_probs=90.3

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCC--CCccCCHHHHHHHh
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLE--HLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~   77 (173)
                      |+|+++   ..|++++|++|+|||++++++|+.+..|+..+.....  ..++|++|||||+|+.  ..+.+..+++..++
T Consensus        61 t~G~~~---~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~  137 (178)
T 2iwr_A           61 EAGAPD---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALX  137 (178)
T ss_dssp             CSSSCC---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHH
T ss_pred             CCCCch---hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHH
Confidence            788876   6799999999999999999999999998777665542  2579999999999993  55778889999988


Q ss_pred             hhc-CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VKY-NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ... ++.|++|||++|. ||+++|++|++.+.+
T Consensus       138 ~~~~~~~~~~~Sa~~~~-~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          138 ADMKRCSYYETXATYGL-NVDRVFQEVAQKVVT  169 (178)
T ss_dssp             HHHSSEEEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred             HhhcCCeEEEEeccccC-CHHHHHHHHHHHHHH
Confidence            876 6889999999999 999999999998875

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.86  E-value=2.3e-21  Score=141.29  Aligned_cols=106  Identities=27%  Similarity=0.347  Sum_probs=97.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        77 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  155 (191)
T 2a5j_A           77 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFARE  155 (191)
T ss_dssp             CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCCccccCHHHHHHHHHH
Confidence            7899874  78899999999999999999999999999999998765 36799999999999987778888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|++|++.+.+
T Consensus       156 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          156 HGLIFMETSAKTAC-NVEEAFINTAKEIYR  184 (191)
T ss_dssp             HTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.86  E-value=1.9e-21  Score=138.36  Aligned_cols=106  Identities=24%  Similarity=0.259  Sum_probs=92.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..
T Consensus        62 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  140 (170)
T 1z08_A           62 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAES  140 (170)
T ss_dssp             CCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence            7898873  88889999999999999999999999999999987765 35799999999999988788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|++|++.+.+
T Consensus       141 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  169 (170)
T 1z08_A          141 VGAKHYHTSAKQNK-GIEELFLDLCKRMIE  169 (170)
T ss_dssp             TTCEEEEEBTTTTB-SHHHHHHHHHHHHHC
T ss_pred             cCCeEEEecCCCCC-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999998865

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.86  E-value=2.2e-21  Score=141.58  Aligned_cols=107  Identities=17%  Similarity=0.226  Sum_probs=96.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~   76 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+ ..|+..+....  .++|++||+||+|+.+.  +.+..+++..+
T Consensus        78 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  155 (194)
T 3reg_A           78 TAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI--DTAKTVLVGLKVDLRKDGSDDVTKQEGDDL  155 (194)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSEEEEEEECGGGCCTTTTCCCHHHHHHH
T ss_pred             CCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhccCCCCcccHHHHHHH
Confidence            7899874  889999999999999999999999997 67999888765  67999999999999753  67888999999


Q ss_pred             hhhcCCe-EEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          77 AVKYNCT-FHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        77 ~~~~~~~-~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +..+++. |++|||++|. ||+++|++|++.+.+..
T Consensus       156 ~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~~  190 (194)
T 3reg_A          156 CQKLGCVAYIEASSVAKI-GLNEVFEKSVDCIFSNK  190 (194)
T ss_dssp             HHHHTCSCEEECBTTTTB-SHHHHHHHHHHHHHCSC
T ss_pred             HHhcCCCEEEEeecCCCC-CHHHHHHHHHHHHHhcC
Confidence            9999988 9999999999 99999999999988744

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=1.4e-21  Score=144.32  Aligned_cols=106  Identities=21%  Similarity=0.248  Sum_probs=97.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        82 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~  160 (201)
T 2ew1_A           82 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEA  160 (201)
T ss_dssp             ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence            7899874  78899999999999999999999999999999998765 36799999999999987788888999999998


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.|++|||++|. ||+++|.+|++.+.+
T Consensus       161 ~~~~~~~~Sa~~g~-gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          161 QDMYYLETSAKESD-NVEKLFLDLACRLIS  189 (201)
T ss_dssp             HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.86  E-value=2.8e-21  Score=138.47  Aligned_cols=106  Identities=22%  Similarity=0.240  Sum_probs=96.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..
T Consensus        71 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  149 (179)
T 1z0f_A           71 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE  149 (179)
T ss_dssp             CTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999988765 36799999999999987788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. ||+++|++|++.+.+
T Consensus       150 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          150 NGLLFLEASAKTGE-NVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHC-
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999988754

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.86  E-value=2.2e-21  Score=137.81  Aligned_cols=106  Identities=26%  Similarity=0.279  Sum_probs=95.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... .+++|+++|+||+|+.+.+.+..+++..++..
T Consensus        62 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~  140 (170)
T 1r2q_A           62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADD  140 (170)
T ss_dssp             ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccCccccccCHHHHHHHHHH
Confidence            7898873  88899999999999999999999999999999988765 36899999999999987778888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. |++++|++|++.+.+
T Consensus       141 ~~~~~~~~Sa~~g~-gi~~l~~~i~~~~~~  169 (170)
T 1r2q_A          141 NSLLFMETSAKTSM-NVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHTSCC
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999986643

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=3.9e-21  Score=138.13  Aligned_cols=106  Identities=27%  Similarity=0.338  Sum_probs=92.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        67 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  145 (180)
T 2g6b_A           67 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKE  145 (180)
T ss_dssp             CCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccCcccccCHHHHHHHHHH
Confidence            7899874  78899999999999999999999999999999998865 36799999999999988788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. ||+++|++|.+.+.+
T Consensus       146 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          146 YGLPFMETSAKTGL-NVDLAFTAIAKELKR  174 (180)
T ss_dssp             HTCCEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998876

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.86  E-value=3.9e-21  Score=140.05  Aligned_cols=106  Identities=28%  Similarity=0.351  Sum_probs=98.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        72 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  150 (196)
T 3tkl_A           72 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADS  150 (196)
T ss_dssp             ECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence            7898873  88999999999999999999999999999999998876 36799999999999988888888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+++|||++|. ||+++|++|++.+.+
T Consensus       151 ~~~~~~~~Sa~~g~-gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          151 LGIPFLETSAKNAT-NVEQSFMTMAAEIKK  179 (196)
T ss_dssp             TTCCEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCcEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998876

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=6.2e-21  Score=139.12  Aligned_cols=105  Identities=19%  Similarity=0.273  Sum_probs=94.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+. .|+..+....  +++|++||+||+|+.+.            +
T Consensus        73 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  150 (194)
T 2atx_A           73 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEK  150 (194)
T ss_dssp             CCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred             CCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhcccccchhhcccccCc
Confidence            8999884  8889999999999999999999999997 7999998875  57999999999999753            4


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+..+++..++..+++ .|++|||++|. ||+++|++|++.++.
T Consensus       151 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~  193 (194)
T 2atx_A          151 PICVEQGQKLAKEIGACCYVECSALTQK-GLKTVFDEAIIAILT  193 (194)
T ss_dssp             CCCHHHHHHHHHHHTCSCEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHcCCcEEEEeeCCCCC-CHHHHHHHHHHHHhc
Confidence            6888899999998887 89999999999 999999999998764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.86  E-value=3.8e-21  Score=138.28  Aligned_cols=106  Identities=24%  Similarity=0.231  Sum_probs=96.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... .+++|+++|+||+|+.+.+.+..+++..++..
T Consensus        68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~  146 (181)
T 2efe_B           68 TAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQG-NPNMVMALAGNKSDLLDARKVTAEDAQTYAQE  146 (181)
T ss_dssp             CCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccccCCHHHHHHHHHH
Confidence            7898873  88899999999999999999999999999999998875 36899999999999987788888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|++|++.+.+
T Consensus       147 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          147 NGLFFMETSAKTAT-NVKEIFYEIARRLPR  175 (181)
T ss_dssp             TTCEEEECCSSSCT-THHHHHHHHHHTCC-
T ss_pred             cCCEEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999987755

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.86  E-value=5.2e-21  Score=139.11  Aligned_cols=106  Identities=28%  Similarity=0.331  Sum_probs=97.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        78 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  156 (189)
T 2gf9_A           78 TAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYS-WDNAQVILVGNKCDLEDERVVPAEDGRRLADD  156 (189)
T ss_dssp             CCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccCCCHHHHHHHHHH
Confidence            7899873  88999999999999999999999999999999988765 35799999999999987788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. ||+++|++|++.+.+
T Consensus       157 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          157 LGFEFFEASAKENI-NVKQVFERLVDVICE  185 (189)
T ss_dssp             HTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998865

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.86  E-value=5.8e-21  Score=140.13  Aligned_cols=107  Identities=27%  Similarity=0.391  Sum_probs=98.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+.+.+.+..+++..++..
T Consensus        69 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  148 (206)
T 2bov_A           69 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ  148 (206)
T ss_dssp             CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCccccccccHHHHHHHHHH
Confidence            7899884  88899999999999999999999999999999998876445899999999999988778888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. ||+++|++|++.+.+
T Consensus       149 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          149 WNVNYVETSAKTRA-NVDKVFFDLMREIRA  177 (206)
T ss_dssp             HTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred             hCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998876

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.86  E-value=4e-21  Score=137.93  Aligned_cols=105  Identities=20%  Similarity=0.211  Sum_probs=97.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+....  .++|++||+||+|+.+.+.+..+++..++..
T Consensus        65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~  142 (181)
T 3tw8_B           65 TAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC--DDVCRILVGNKNDDPERKVVETEDAYKFAGQ  142 (181)
T ss_dssp             ETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC--TTSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCCCchhcccCHHHHHHHHHH
Confidence            7888773  88899999999999999999999999999999998865  6899999999999988888888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|++|.+.+.+
T Consensus       143 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  171 (181)
T 3tw8_B          143 MGIQLFETSAKENV-NVEEMFNCITELVLR  171 (181)
T ss_dssp             HTCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998876

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.86  E-value=5.1e-21  Score=138.00  Aligned_cols=107  Identities=27%  Similarity=0.391  Sum_probs=98.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+.+.+.+..+++..++..
T Consensus        73 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  152 (187)
T 2a9k_A           73 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ  152 (187)
T ss_dssp             CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccCHHHHHHHHHH
Confidence            7899874  88899999999999999999999999999999998887445899999999999987778888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||+++. ||+++|++|++.+.+
T Consensus       153 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          153 WNVNYVETSAKTRA-NVDKVFFDLMREIRA  181 (187)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCeEEEeCCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998865

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=1.2e-21  Score=142.84  Aligned_cols=106  Identities=28%  Similarity=0.356  Sum_probs=96.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        79 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  157 (191)
T 3dz8_A           79 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYS-WDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ  157 (191)
T ss_dssp             HHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence            5676653  78899999999999999999999999999999998865 46899999999999988888899999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+++|||++|. ||+++|++|++.+.+
T Consensus       158 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  186 (191)
T 3dz8_A          158 LGFDFFEASAKENI-SVRQAFERLVDAICD  186 (191)
T ss_dssp             HTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.86  E-value=7.2e-21  Score=140.10  Aligned_cols=107  Identities=27%  Similarity=0.329  Sum_probs=98.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        64 t~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  142 (206)
T 2bcg_Y           64 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA  142 (206)
T ss_dssp             CTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence            8999874  88999999999999999999999999999999998765 36799999999999988788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      .++.++++||++|. ||+++|.+|.+.+.+.
T Consensus       143 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          143 NKMPFLETSALDST-NVEDAFLTMARQIKES  172 (206)
T ss_dssp             TTCCEEECCTTTCT-THHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHHH
Confidence            99999999999999 9999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.86  E-value=4.3e-21  Score=135.74  Aligned_cols=107  Identities=30%  Similarity=0.466  Sum_probs=97.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++++|||++++.+|+.+..|+..+.......++|+++|+||+|+.+.+++..+++..++..
T Consensus        58 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  137 (167)
T 1kao_A           58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE  137 (167)
T ss_dssp             CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCCHHHHHHHHHH
Confidence            7899884  88899999999999999999999999999999988776446899999999999987788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. |++++|++|++.+.+
T Consensus       138 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          138 WGCPFMETSAKSKT-MVDELFAEIVRQMNY  166 (167)
T ss_dssp             HTSCEEEECTTCHH-HHHHHHHHHHHHHHH
T ss_pred             hCCCEEEecCCCCc-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999987753

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.86  E-value=4.4e-21  Score=143.28  Aligned_cols=109  Identities=28%  Similarity=0.342  Sum_probs=95.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        69 t~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  147 (223)
T 3cpj_B           69 TAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENA-DDNVAVGLIGNKSDLAHLRAVPTEESKTFAQE  147 (223)
T ss_dssp             CTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHC-C--CEEEEEECCGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCeEEEEEECcccccccccCHHHHHHHHHH
Confidence            8999884  88999999999999999999999999999999998765 35799999999999987788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      .++.|+++||++|. ||+++|++|++.+.+...
T Consensus       148 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          148 NQLLFTETSALNSE-NVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             TTCEEEECCCC-CC-CHHHHHHHHHHHHTTCC-
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHHHhh
Confidence            99999999999999 999999999999987443

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.86  E-value=6.2e-21  Score=135.60  Aligned_cols=106  Identities=24%  Similarity=0.279  Sum_probs=96.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...|++++|++|+|||++++.+|+.+..|+..+.... .+.+|+++|+||+|+.+.+++..+++..++..
T Consensus        62 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~-~~~~~iilv~nK~Dl~~~~~v~~~~~~~~~~~  140 (170)
T 1z0j_A           62 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADS  140 (170)
T ss_dssp             ECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECCccccccccCHHHHHHHHHH
Confidence            7898873  78899999999999999999999999999999998864 46899999999999988788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. |++++|++|.+.+.+
T Consensus       141 ~~~~~~~~Sa~~~~-~i~~l~~~i~~~i~~  169 (170)
T 1z0j_A          141 IHAIFVETSAKNAI-NINELFIEISRRIPS  169 (170)
T ss_dssp             TTCEEEECBTTTTB-SHHHHHHHHHHHCCC
T ss_pred             cCCEEEEEeCCCCc-CHHHHHHHHHHHHhc
Confidence            99999999999999 999999999987643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.86  E-value=3e-21  Score=140.88  Aligned_cols=106  Identities=20%  Similarity=0.225  Sum_probs=96.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..
T Consensus        79 t~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~-~~~~piiiv~NK~Dl~~~~~v~~~~~~~~~~~  157 (192)
T 2fg5_A           79 TAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHG-PENIVMAIAGNKCDLSDIREVPLKDAKEYAES  157 (192)
T ss_dssp             ECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred             CCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhC-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            7898873  88899999999999999999999999999999998765 35799999999999987778888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++|||++|. ||+++|++|.+.+.+
T Consensus       158 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          158 IGAIVVETSAKNAI-NIEELFQGISRQIPP  186 (192)
T ss_dssp             TTCEEEECBTTTTB-SHHHHHHHHHHTCC-
T ss_pred             cCCEEEEEeCCCCc-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999987755

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.85  E-value=4.9e-21  Score=138.41  Aligned_cols=106  Identities=21%  Similarity=0.231  Sum_probs=96.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+...+.+..+++..++..
T Consensus        66 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  144 (186)
T 2bme_A           66 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQE  144 (186)
T ss_dssp             ECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            7898874  78899999999999999999999999999999888765 36799999999999987788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++|||++|. ||+++|++|++.+.+
T Consensus       145 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          145 NELMFLETSALTGE-NVEEAFVQCARKILN  173 (186)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCEEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.85  E-value=7.2e-21  Score=139.69  Aligned_cols=106  Identities=30%  Similarity=0.374  Sum_probs=97.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        64 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  142 (203)
T 1zbd_A           64 TAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH  142 (203)
T ss_dssp             ECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CSSCEEEEEEECTTCTTSCCSCHHHHHHHHHH
T ss_pred             CCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999988765 45799999999999988788888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+++|||++|. ||+++|++|++.+.+
T Consensus       143 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  171 (203)
T 1zbd_A          143 LGFEFFEASAKDNI-NVKQTFERLVDVICE  171 (203)
T ss_dssp             HTCEEEECBTTTTB-SSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999988865

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=7.3e-21  Score=138.34  Aligned_cols=109  Identities=28%  Similarity=0.326  Sum_probs=97.3

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .++..|++++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+. .+.+..+++..++..
T Consensus        71 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~  149 (195)
T 1x3s_A           71 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARK  149 (195)
T ss_dssp             ECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHH
T ss_pred             CCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCc-ccccCHHHHHHHHHH
Confidence            789887  38899999999999999999999999999999999876544679999999999995 466778889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      .++.++++||+++. ||+++|++|.+.+.+...
T Consensus       150 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~~~  181 (195)
T 1x3s_A          150 HSMLFIEASAKTCD-GVQCAFEELVEKIIQTPG  181 (195)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHHTSGG
T ss_pred             cCCEEEEecCCCCC-CHHHHHHHHHHHHHhhhh
Confidence            99999999999999 999999999999987543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.85  E-value=5.4e-21  Score=139.64  Aligned_cols=106  Identities=26%  Similarity=0.344  Sum_probs=95.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        82 t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~  160 (192)
T 2il1_A           82 TAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYA-SEDAELLLVGNKLDCETDREITRQQGEKFAQQ  160 (192)
T ss_dssp             ECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHh
Confidence            7898874  78899999999999999999999999999999888765 35799999999999988788888888899887


Q ss_pred             c-CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 Y-NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      . ++.+++|||++|. ||+++|++|++.+.+
T Consensus       161 ~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          161 ITGMRFCEASAKDNF-NVDEIFLKLVDDILK  190 (192)
T ss_dssp             STTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            5 7899999999999 999999999988765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.85  E-value=9.1e-21  Score=137.41  Aligned_cols=107  Identities=32%  Similarity=0.369  Sum_probs=97.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+++.+..|+..+.......++|+++|+||+|+.+.+.+..+++..++..
T Consensus        77 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  156 (195)
T 3bc1_A           77 TAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEK  156 (195)
T ss_dssp             ECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHH
Confidence            7888874  78899999999999999999999999999999998876446899999999999987778888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|++|.+.+.+
T Consensus       157 ~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          157 YGIPYFETSAANGT-NISHAIEMLLDLIMK  185 (195)
T ss_dssp             HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998865

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.85  E-value=6.9e-21  Score=138.50  Aligned_cols=103  Identities=15%  Similarity=0.187  Sum_probs=91.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLI------DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~------~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~   73 (173)
                      |+|+++.  ++..|++++|++|+|||++      +.++|+.+..|+.++...  ..++|++||+||+|+.+  .+..+++
T Consensus        81 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~--~~~~piilv~NK~Dl~~--~~~~~~~  156 (198)
T 3t1o_A           81 VPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLT--LDDVPIVIQVNKRDLPD--ALPVEMV  156 (198)
T ss_dssp             CCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCC--TTSSCEEEEEECTTSTT--CCCHHHH
T ss_pred             CCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccc--cCCCCEEEEEEchhccc--ccCHHHH
Confidence            8999884  8899999999999999999      667888888999888543  37899999999999975  3778899


Q ss_pred             HHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          74 RSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        74 ~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++...++ .+++|||++|. ||+++|++|++.+.+
T Consensus       157 ~~~~~~~~~~~~~~~Sa~~~~-gv~~l~~~l~~~i~~  192 (198)
T 3t1o_A          157 RAVVDPEGKFPVLEAVATEGK-GVFETLKEVSRLVLA  192 (198)
T ss_dssp             HHHHCTTCCSCEEECBGGGTB-THHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCceEEEEecCCCc-CHHHHHHHHHHHHHH
Confidence            999999998 99999999999 999999999998876

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.85  E-value=6.1e-21  Score=135.48  Aligned_cols=105  Identities=20%  Similarity=0.230  Sum_probs=94.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC---ccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL---RQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~---~~v~~~~~~~~   76 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+...   +.+..+++..+
T Consensus        59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~  137 (170)
T 1ek0_A           59 TAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDXLQEGGERKVAREEGEKL  137 (170)
T ss_dssp             ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH
T ss_pred             CCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCccccccccCCCHHHHHHH
Confidence            7898873  88899999999999999999999999999999988765 367999999999999765   67888889999


Q ss_pred             hhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        77 ~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +...++.++++||++|. |++++|++|.+.+.
T Consensus       138 ~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          138 AEEKGLLFFETSAKTGE-NVNDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHTCEEEECCTTTCT-THHHHHHHHHTTSC
T ss_pred             HHHcCCEEEEEeCCCCC-CHHHHHHHHHHHHh
Confidence            99999999999999999 99999999987654

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.85  E-value=7.1e-21  Score=135.05  Aligned_cols=105  Identities=24%  Similarity=0.332  Sum_probs=96.5

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .++..|++++|++|+|||++++.+|+.+..|+..+....  .++|+++|+||+|+.+.+.+..+++..++..
T Consensus        61 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  138 (168)
T 1z2a_A           61 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR  138 (168)
T ss_dssp             CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECcccCcccccCHHHHHHHHHH
Confidence            789887  388899999999999999999999999999999998876  6799999999999987778888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|++|.+.+.+
T Consensus       139 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          139 LKLRFYRTSVKEDL-NVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             HTCEEEECBTTTTB-SSHHHHHHHHHHHHC
T ss_pred             cCCeEEEEecCCCC-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999988765

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.85  E-value=6.6e-21  Score=138.09  Aligned_cols=105  Identities=18%  Similarity=0.162  Sum_probs=93.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+ ..|+..+....  +++|++|||||+|+.+.            +
T Consensus        62 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  139 (184)
T 1m7b_A           62 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQT  139 (184)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             CCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEEcchhhcchhhHhhhhhcccC
Confidence            7899874  888999999999999999999999999 68999988765  67999999999999742            5


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEccc-CCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVA-DNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak-~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++..++..++ +.|++|||+ ++. ||+++|+.|++.++.
T Consensus       140 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~-gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          140 PVSYDQGANMAKQIGAATYIECSALQSEN-SVRDIFHVATLACVN  183 (184)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECBTTTBHH-HHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHcCCcEEEEeeecCCCc-CHHHHHHHHHHHHhc
Confidence            688889999998887 789999999 688 999999999988764

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.85  E-value=5.4e-21  Score=140.59  Aligned_cols=106  Identities=22%  Similarity=0.244  Sum_probs=96.5

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+...+.+..+++..++..
T Consensus        81 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~  159 (200)
T 2o52_A           81 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLA-SPNIVVILCGNKKDLDPEREVTFLEASRFAQE  159 (200)
T ss_dssp             CTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCCcccccccCHHHHHHHHHH
Confidence            788876  378899999999999999999999999999999988765 36799999999999987788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++|||++|. ||+++|.+|++.+.+
T Consensus       160 ~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~  188 (200)
T 2o52_A          160 NELMFLETSALTGE-NVEEAFLKCARTILN  188 (200)
T ss_dssp             TTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.85  E-value=8.3e-21  Score=139.28  Aligned_cols=106  Identities=27%  Similarity=0.370  Sum_probs=93.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC------CCccCCHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE------HLRQVDESLG   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~------~~~~v~~~~~   73 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.      ..+.+..+++
T Consensus        84 t~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~  162 (199)
T 2p5s_A           84 TAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAA-HETVPIMLVGNKADIRDTAATEGQKCVPGHFG  162 (199)
T ss_dssp             CTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC----CCEEEEEECGGGHHHHHHTTCCCCCHHHH
T ss_pred             CCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhc-CCCCCEEEEEECcccccccccccccccCHHHH
Confidence            7899884  88899999999999999999999999999999888764 3579999999999996      3567888889


Q ss_pred             HHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          74 RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        74 ~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++...++.|++|||++|. ||+++|.+|++.+.+
T Consensus       163 ~~~~~~~~~~~~~~SA~~g~-gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          163 EKLAMTYGALFCETSAKDGS-NIVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHHHHTCEEEECCTTTCT-THHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCeEEEeeCCCCC-CHHHHHHHHHHHHHh
Confidence            99999999999999999999 999999999998764

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.85  E-value=1.9e-20  Score=138.94  Aligned_cols=110  Identities=19%  Similarity=0.257  Sum_probs=96.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|+.++|++|+|||+++..+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        68 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  146 (218)
T 4djt_A           68 TAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVV-GNEAPIVVCANKIDIKNRQKISKKLVMEVLKG  146 (218)
T ss_dssp             ECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSSSCEEEEEECTTCC----CCHHHHHHHTTT
T ss_pred             cCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCCccccccCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999998876 35699999999999988778888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      .++.+++|||++|. ||+++|++|++.+.+....
T Consensus       147 ~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~~~~~  179 (218)
T 4djt_A          147 KNYEYFEISAKTAH-NFGLPFLHLARIFTGRPDL  179 (218)
T ss_dssp             CCCEEEEEBTTTTB-TTTHHHHHHHHHHHCCTTC
T ss_pred             cCCcEEEEecCCCC-CHHHHHHHHHHHHhccccc
Confidence            99999999999999 9999999999999875443

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.85  E-value=1.4e-20  Score=137.98  Aligned_cols=105  Identities=18%  Similarity=0.265  Sum_probs=94.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+. .|+..+....  .++|++||+||+|+..            .+
T Consensus        75 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  152 (201)
T 2q3h_A           75 TAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC--PKAPIILVGTQSDLREDVKVLIELDKCKEK  152 (201)
T ss_dssp             CCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSSCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEECHhhhhchhhhhhhcccccc
Confidence            8999884  8889999999999999999999999997 7999998875  5899999999999975            35


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+..+++..++..+++ .|++|||++|. ||+++|++|++.+.+
T Consensus       153 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          153 PVPEEAAKLLAEEIKAASYIECSALTQK-NLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCcEEEEEecCCCC-CHHHHHHHHHHHHhc
Confidence            6788889999998887 89999999999 999999999998875

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.85  E-value=1.4e-20  Score=137.18  Aligned_cols=106  Identities=28%  Similarity=0.346  Sum_probs=96.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+...+.+..+++..++..
T Consensus        81 t~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  159 (193)
T 2oil_A           81 TAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHA-EATIVVMLVGNKSDLSQAREVPTEEARMFAEN  159 (193)
T ss_dssp             ESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECCCcccccccCHHHHHHHHHH
Confidence            7899874  88999999999999999999999999999999988764 36799999999999987778888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++|||++|. ||+++|.+|++.+.+
T Consensus       160 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          160 NGLLFLETSALDST-NVELAFETVLKEIFA  188 (193)
T ss_dssp             TTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998865

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.85  E-value=7.2e-21  Score=138.35  Aligned_cols=107  Identities=21%  Similarity=0.283  Sum_probs=93.3

Q ss_pred             CCCCCC---ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTE---GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~---~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|+++   .++..|++++|++|+|||++++.+|+.+..|+.++.......++|++||+||+|+.+.+++..+++..++.
T Consensus        76 t~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~  155 (189)
T 1z06_A           76 TAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFAD  155 (189)
T ss_dssp             CCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHH
T ss_pred             CCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeCHHHHHHHHH
Confidence            788876   37889999999999999999999999999999999887544689999999999998778888899999999


Q ss_pred             hcCCeEEEEcccCC---cccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSVADN---SPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sak~g---~~~v~~lf~~l~~~i~~  109 (173)
                      ..++.++++||+++   . ||+++|.+|++.+.+
T Consensus       156 ~~~~~~~~~Sa~~~~~~~-~i~~l~~~l~~~i~~  188 (189)
T 1z06_A          156 THSMPLFETSAKNPNDND-HVEAIFMTLAHKLKS  188 (189)
T ss_dssp             HTTCCEEECCSSSGGGGS-CHHHHHHHHC-----
T ss_pred             HcCCEEEEEeCCcCCccc-CHHHHHHHHHHHHhh
Confidence            99999999999999   8 999999999887653

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.85  E-value=4.8e-21  Score=141.67  Aligned_cols=107  Identities=23%  Similarity=0.344  Sum_probs=92.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--------CCH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--------VDE   70 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--------v~~   70 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+. .|+..+....  +++|++||+||+|+.+.+.        +..
T Consensus        64 t~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~v~~  141 (212)
T 2j0v_A           64 TAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA--PNVPIVLVGTKLDLRDDKGYLADHTNVITS  141 (212)
T ss_dssp             CCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHTCSSCCCH
T ss_pred             CCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEeCHHhhhCccccccccCCCCH
Confidence            8999884  8889999999999999999999999997 7999998875  5799999999999976543        478


Q ss_pred             HHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          71 SLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        71 ~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +++..++..+++ .|++|||++|. ||+++|++|++.+.+..
T Consensus       142 ~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~~~  182 (212)
T 2j0v_A          142 TQGEELRKQIGAAAYIECSSKTQQ-NVKAVFDTAIKVVLQPP  182 (212)
T ss_dssp             HHHHHHHHHHTCSEEEECCTTTCT-THHHHHHHHHHHHHCC-
T ss_pred             HHHHHHHHHcCCceEEEccCCCCC-CHHHHHHHHHHHHhhhh
Confidence            888899998885 89999999999 99999999999998743

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.85  E-value=1.4e-20  Score=133.79  Aligned_cols=105  Identities=24%  Similarity=0.312  Sum_probs=94.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+ ..+.+..+++..++..
T Consensus        59 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~  136 (170)
T 1g16_A           59 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKE  136 (170)
T ss_dssp             CTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTC-TTCCSCHHHHHHHHHH
T ss_pred             CCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECccC-CcCccCHHHHHHHHHH
Confidence            7898873  88899999999999999999999999999999988865 357999999999999 4466788888999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|.+|.+.+.+
T Consensus       137 ~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~  165 (170)
T 1g16_A          137 LGIPFIESSAKNDD-NVNEIFFTLAKLIQE  165 (170)
T ss_dssp             HTCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998876

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.84  E-value=5.5e-21  Score=137.57  Aligned_cols=105  Identities=23%  Similarity=0.288  Sum_probs=92.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc----------C
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQ----------V   68 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~----------v   68 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+.+.          +
T Consensus        63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~v  140 (182)
T 3bwd_D           63 TAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA--PGVPIVLVGTKLDLRDDKQFFIDHPGAVPI  140 (182)
T ss_dssp             CCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECHHHHTCHHHHHHC--CCCC
T ss_pred             CCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhhcCcccccccccCCCC
Confidence            8999884  8889999999999999999999999997 6999988875  5799999999999965543          4


Q ss_pred             CHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          69 DESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        69 ~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..+++..++..+++ .|++|||++|. ||+++|++|++.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  181 (182)
T 3bwd_D          141 TTVQGEELKKLIGAPAYIECSSKSQE-NVKGVFDAAIRVVLQ  181 (182)
T ss_dssp             CHHHHHHHHHHHTCSEEEECCTTTCT-THHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHcCCCEEEEEECCCCC-CHHHHHHHHHHHHhc
Confidence            77888899988886 89999999999 999999999988764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.84  E-value=1.1e-20  Score=136.19  Aligned_cols=107  Identities=21%  Similarity=0.298  Sum_probs=95.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+.            +
T Consensus        60 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  137 (186)
T 1mh1_A           60 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT  137 (186)
T ss_dssp             CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC--CCCCEEEEeEcccccccchhhhhhcccccc
Confidence            8999874  8888999999999999999999999997 6999988765  47999999999998653            5


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .+..+++..++...++ .+++|||++|. ||+++|++|++.+.+.+
T Consensus       138 ~v~~~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~~~  182 (186)
T 1mh1_A          138 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAVLCPP  182 (186)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHSCCC
T ss_pred             cCCHHHHHHHHHhcCCcEEEEecCCCcc-CHHHHHHHHHHHHhccc
Confidence            6788888999998886 89999999999 99999999999987644

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=1.6e-20  Score=137.38  Aligned_cols=108  Identities=30%  Similarity=0.485  Sum_probs=97.9

Q ss_pred             CCCCCC-ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792           2 TIGLTE-GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY   80 (173)
Q Consensus         2 TaG~e~-~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~   80 (173)
                      |+|+++ .++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+.+.+.+..+++..++..+
T Consensus        83 t~G~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~  162 (196)
T 2atv_A           83 TAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL  162 (196)
T ss_dssp             CCCCCCCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH
T ss_pred             CCCCCcccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHHHHHHHHHHh
Confidence            789887 5888999999999999999999999999999999988764568999999999999887888899999999999


Q ss_pred             CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          81 NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        81 ~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++.|++|||++|..||+++|++|++.+.+
T Consensus       163 ~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~  191 (196)
T 2atv_A          163 ACAFYECSACTGEGNITEIFYELCREVRR  191 (196)
T ss_dssp             TSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCcCHHHHHHHHHHHHHh
Confidence            99999999999954899999999998865

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.84  E-value=3.2e-20  Score=134.15  Aligned_cols=106  Identities=26%  Similarity=0.403  Sum_probs=95.0

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .++..|++++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.+ +.+..+++..++..
T Consensus        59 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~  137 (189)
T 4dsu_A           59 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARS  137 (189)
T ss_dssp             CCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS-CSSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc-cccCHHHHHHHHHH
Confidence            799988  389999999999999999999999999999999998876557899999999999974 66778889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. ||+++|++|++.+.+
T Consensus       138 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          138 YGIPFIETSAKTRQ-GVDDAFYTLVREIRK  166 (189)
T ss_dssp             HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.84  E-value=8.2e-21  Score=139.38  Aligned_cols=107  Identities=21%  Similarity=0.194  Sum_probs=86.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCCC-CccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLEH-LRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~~-~~~v~~~~~~~~   76 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.....  ..++|++||+||+|+.+ .+.++.+++..+
T Consensus        80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~  159 (208)
T 2yc2_C           80 TAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDW  159 (208)
T ss_dssp             TTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCCHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCCHHHHHHH
Confidence            7898773  888999999999999999999999999999999988762  15799999999999987 778888999999


Q ss_pred             hhhcCCeEEEEcccC-CcccHHHHHHHHHHHHhc
Q psy2792          77 AVKYNCTFHEVSVAD-NSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 ~~~~~~~~~e~Sak~-g~~~v~~lf~~l~~~i~~  109 (173)
                      +..+++.+++|||++ |. ||+++|++|++.+.+
T Consensus       160 ~~~~~~~~~~~Sa~~~~~-gi~~l~~~i~~~~~~  192 (208)
T 2yc2_C          160 ATTNTLDFFDVSANPPGK-DADAPFLSIATTFYR  192 (208)
T ss_dssp             HHHTTCEEEECCC--------CHHHHHHHHHHHH
T ss_pred             HHHcCCEEEEeccCCCCc-CHHHHHHHHHHHHHH
Confidence            999999999999999 99 999999999998875

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.84  E-value=1.1e-20  Score=135.46  Aligned_cols=106  Identities=25%  Similarity=0.351  Sum_probs=95.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|+.++|++|+|||++++.+|+.+..|+..+.... ..++|+++|+||+|+.+.+.+..+++..++..
T Consensus        70 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~  148 (179)
T 2y8e_A           70 TAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTER-GSDVIIMLVGNKTDLSDKRQVSTEEGERKAKE  148 (179)
T ss_dssp             ECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECCcccccCcCCHHHHHHHHHH
Confidence            7898873  78899999999999999999999999999999988765 36799999999999988788888899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. |++++|++|.+.+.+
T Consensus       149 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          149 LNVMFIETSAKAGY-NVKQLFRRVAAALPG  177 (179)
T ss_dssp             HTCEEEEEBTTTTB-SHHHHHHHHHHTCC-
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999886643

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.84  E-value=1.4e-20  Score=139.28  Aligned_cols=105  Identities=18%  Similarity=0.170  Sum_probs=92.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |+|++++  ++..|++++|++|+|||++++++|+.+ ..|+..+....  .++|++|||||+|+.+            .+
T Consensus        83 t~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  160 (205)
T 1gwn_A           83 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQT  160 (205)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             CCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC--CCCCEEEEEechhhccchhhhhhhcccccC
Confidence            7899874  888999999999999999999999999 68999998765  6799999999999974            25


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEccc-CCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVA-DNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak-~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++..++..++ +.|++|||+ ++. ||+++|+.|++.++.
T Consensus       161 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~~-gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          161 PVSYDQGANMAKQIGAATYIECSALQSEN-SVRDIFHVATLACVN  204 (205)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECCTTTCHH-HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHcCCCEEEEeeeccCCc-CHHHHHHHHHHHHhh
Confidence            688888999998887 789999999 688 999999999988764

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.84  E-value=3.9e-20  Score=135.98  Aligned_cols=105  Identities=19%  Similarity=0.235  Sum_probs=93.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+ ..|+..+....  +++|+++|+||+|+...            +
T Consensus        80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  157 (201)
T 2gco_A           80 TAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRQDEHTRRELAKMKQE  157 (201)
T ss_dssp             CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGTTCHHHHHHHHTTTCC
T ss_pred             CCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEecHHhhcCccchhhhcccccC
Confidence            8999873  888899999999999999999999999 67998888765  57999999999999764            4


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+..+++..++...++ .+++|||++|. ||+++|++|++.+++
T Consensus       158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          158 PVRSEEGRDMANRISAFGYLECSAKTKE-GVREVFEMATRAGLQ  200 (201)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHhCCCcEEEEeeCCCCC-CHHHHHHHHHHHHhc
Confidence            5788889999998887 89999999999 999999999988764

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.84  E-value=1.5e-20  Score=139.67  Aligned_cols=106  Identities=16%  Similarity=0.190  Sum_probs=83.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+. .|+..+....  .++|++||+||+|+...            +
T Consensus        89 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  166 (214)
T 2j1l_A           89 TAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC--KKVPIIVVGCKTDLRKDKSLVNKLRRNGLE  166 (214)
T ss_dssp             C---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECGGGGSCHHHHHHHHHTTCC
T ss_pred             CCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEChhhhccchhhhhhcccccC
Confidence            7899874  8889999999999999999999999996 6999988765  67999999999999754            3


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      .++.+++..++...++ .|++|||++|. ||+++|++|++.+.+.
T Consensus       167 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          167 PVTYHRGQEMARSVGAVAYLECSARLHD-NVHAVFQEAAEVALSS  210 (214)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECBTTTTB-SHHHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHhcCCCEEEEecCCCCC-CHHHHHHHHHHHHHHh
Confidence            6788888999999997 89999999999 9999999999988763

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.84  E-value=9.1e-20  Score=128.61  Aligned_cols=106  Identities=25%  Similarity=0.381  Sum_probs=95.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|+.++|++|+|||++++.+|+.+..|+..+.......++|+++|+||+|+.. +.+..+++..++..
T Consensus        58 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~  136 (166)
T 2ce2_X           58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA-RTVESRQAQDLARS  136 (166)
T ss_dssp             CCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHH
T ss_pred             CCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh-cccCHHHHHHHHHH
Confidence            7899873  88889999999999999999999999999999998876445899999999999976 56778888999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.++++||++|. |++++|++|.+.+.+
T Consensus       137 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  165 (166)
T 2ce2_X          137 YGIPYIETSAKTRQ-GVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HTCCEEEECTTTCT-THHHHHHHHHHHHHT
T ss_pred             cCCeEEEecCCCCC-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999988764

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.84  E-value=7.6e-21  Score=141.06  Aligned_cols=107  Identities=28%  Similarity=0.337  Sum_probs=95.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.......++|++||+||+|+.+.+.+..+++..++..
T Consensus        91 t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~  170 (217)
T 2f7s_A           91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK  170 (217)
T ss_dssp             EESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHH
Confidence            6787763  78899999999999999999999999999998887654336799999999999987778888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+++|||++|. ||+++|++|++.+.+
T Consensus       171 ~~~~~~~~Sa~~g~-gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          171 YGIPYFETSAATGQ-NVEKAVETLLDLIMK  199 (217)
T ss_dssp             TTCCEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998876

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.84  E-value=6.4e-20  Score=135.40  Aligned_cols=106  Identities=21%  Similarity=0.262  Sum_probs=94.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+ ..|+..+....  +++|+++|+||+|+...            +
T Consensus        80 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  157 (207)
T 2fv8_A           80 TAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC--PNVPIILVANKKDLRSDEHVRTELARMKQE  157 (207)
T ss_dssp             CTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECGGGGGCHHHHHHHHHTTCC
T ss_pred             CCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEEchhhhccccchhhhhhcccC
Confidence            8999874  888999999999999999999999999 67998888765  67999999999999754            4


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      .+..+++..++...+. .+++|||++|. ||+++|++|++.+.+.
T Consensus       158 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~el~~~l~~~i~~~  201 (207)
T 2fv8_A          158 PVRTDDGRAMAVRIQAYDYLECSAKTKE-GVREVFETATRAALQK  201 (207)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHhcCCCEEEEeeCCCCC-CHHHHHHHHHHHHHHH
Confidence            5778888899988887 89999999999 9999999999998864

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.83  E-value=8.2e-20  Score=130.83  Aligned_cols=107  Identities=21%  Similarity=0.285  Sum_probs=94.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.....   ..++|+++|+||+|+. .+.+..+++..+
T Consensus        63 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~  141 (177)
T 1wms_A           63 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAW  141 (177)
T ss_dssp             CCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS-SCSSCHHHHHHH
T ss_pred             CCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc-ccccCHHHHHHH
Confidence            7898874  788999999999999999999999999999999887652   1578999999999997 567788888888


Q ss_pred             hh-hcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          77 AV-KYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        77 ~~-~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +. ..++.++++||++|. ||+++|++|++.+.+.
T Consensus       142 ~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~~  175 (177)
T 1wms_A          142 CRDNGDYPYFETSAKDAT-NVAAAFEEAVRRVLAT  175 (177)
T ss_dssp             HHHTTCCCEEECCTTTCT-THHHHHHHHHHHHHTC
T ss_pred             HHhcCCceEEEEeCCCCC-CHHHHHHHHHHHHHhh
Confidence            88 567889999999999 9999999999988763

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.83  E-value=2.4e-20  Score=137.03  Aligned_cols=102  Identities=18%  Similarity=0.201  Sum_probs=83.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||+++.  ++..|++++|++|+|||++++++|+.+..|+.++.......++|+++|+||+|+.+  .++.+++..++..
T Consensus        76 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~  153 (198)
T 1f6b_A           76 LGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGL  153 (198)
T ss_dssp             ECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTC
T ss_pred             CCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccc--cCCHHHHHHHhCc
Confidence            7999873  88899999999999999999999999999999987653336799999999999974  5667777776542


Q ss_pred             -----------------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 -----------------YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 -----------------~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                                       .++.+++|||++|. ||+++|++|++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~  196 (198)
T 1f6b_A          154 YGQTTGKGSVSLKELNARPLEVFMCSVLKRQ-GYGEGFRWMAQY  196 (198)
T ss_dssp             TTTCCCSSCCCTTTCCSCCEEEEECBTTTTB-SHHHHHHHHHTT
T ss_pred             ccccccccccccccccCceEEEEEEECCCCC-CHHHHHHHHHHh
Confidence                             34679999999999 999999999864

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.83  E-value=7.7e-20  Score=131.25  Aligned_cols=107  Identities=22%  Similarity=0.274  Sum_probs=86.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCC-CCccCCHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLE-HLRQVDESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~-~~~~v~~~~~~~   75 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.....   ..++|+++|+||+|+. ..+.+..+++..
T Consensus        65 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~  144 (182)
T 1ky3_A           65 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE  144 (182)
T ss_dssp             CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH
T ss_pred             CCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccCCHHHHHH
Confidence            7898873  788899999999999999999999999999999887652   2578999999999995 345677888888


Q ss_pred             Hhh-hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 TAV-KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~-~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++. ..++.+++|||++|. ||+++|++|++.+.+
T Consensus       145 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  178 (182)
T 1ky3_A          145 LAKSLGDIPLFLTSAKNAI-NVDTAFEEIARSALQ  178 (182)
T ss_dssp             HHHHTTSCCEEEEBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCeEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence            887 556889999999999 999999999998865

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.83  E-value=1e-20  Score=133.99  Aligned_cols=105  Identities=17%  Similarity=0.204  Sum_probs=83.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----   75 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+..  ..++...    
T Consensus        51 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~  128 (164)
T 1r8s_A           51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM--NAAEITDKLGL  128 (164)
T ss_dssp             CCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTG
T ss_pred             cCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC--CHHHHHHHhCc
Confidence            7999874  7888999999999999999999999999999888764333679999999999996532  2222222    


Q ss_pred             -HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 -TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 -~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                       .+...++.+++|||++|. ||+++|++|++.+.+
T Consensus       129 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          129 HSLRHRNWYIQATCATSGD-GLYEGLDWLSNQLRN  162 (164)
T ss_dssp             GGCSSCCEEEEECBTTTTB-THHHHHHHHHHHC--
T ss_pred             ccccCccEEEEEcccCCCc-CHHHHHHHHHHHHhh
Confidence             122345679999999999 999999999987754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.83  E-value=8.4e-20  Score=132.56  Aligned_cols=106  Identities=26%  Similarity=0.389  Sum_probs=88.6

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .++..|++++|++|+|||+++..+|+.+..|+..+.......++|+++|+||+|+.. +.+..+++..++..
T Consensus        76 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~  154 (190)
T 3con_A           76 TAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKS  154 (190)
T ss_dssp             CCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC-CCSCHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc-ccCCHHHHHHHHHH
Confidence            789886  388899999999999999999999999999999998876445799999999999976 66778889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. |++++|.+|++.+.+
T Consensus       155 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  183 (190)
T 3con_A          155 YGIPFIETSAKTRQ-GVEDAFYTLVREIRQ  183 (190)
T ss_dssp             HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.83  E-value=4.2e-20  Score=131.35  Aligned_cols=106  Identities=25%  Similarity=0.387  Sum_probs=93.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|+++.  ++..|+.++|++|+|||++++.+|+.+..|+..+.+... ..++|+++|+||+|+.+.+.+..+++..++.
T Consensus        58 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~  137 (172)
T 2erx_A           58 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR  137 (172)
T ss_dssp             CCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             CCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHH
Confidence            7999874  888999999999999999999999999999888877642 2479999999999998778888888888999


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      .+++.++++||++|. ||+++|++|.+.+.
T Consensus       138 ~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~  166 (172)
T 2erx_A          138 TWKCAFMETSAKLNH-NVKELFQELLNLEK  166 (172)
T ss_dssp             HHTCEEEECBTTTTB-SHHHHHHHHHHTCC
T ss_pred             HhCCeEEEecCCCCc-CHHHHHHHHHHHHh
Confidence            889999999999999 99999999997654

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.83  E-value=5.2e-20  Score=134.38  Aligned_cols=102  Identities=24%  Similarity=0.238  Sum_probs=86.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+  .++.+++..++..
T Consensus        74 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~  151 (190)
T 1m2o_B           74 LGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN--AVSEAELRSALGL  151 (190)
T ss_dssp             CCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT--CCCHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC--CCCHHHHHHHhCC
Confidence            8999874  88899999999999999999999999999999887654336799999999999975  5666776665542


Q ss_pred             ------------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          80 ------------YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        80 ------------~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                                  .++.|++|||++|. ||+++|++|++.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~  189 (190)
T 1m2o_B          152 LNTTGSQRIEGQRPVEVFMCSVVMRN-GYLEAFQWLSQY  189 (190)
T ss_dssp             SSCCC---CCSSCCEEEEECBTTTTB-SHHHHHHHHHTT
T ss_pred             ccccccccccccceEEEEEeECCcCC-CHHHHHHHHHhh
Confidence                        35679999999999 999999999753

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.82  E-value=1.6e-19  Score=131.61  Aligned_cols=103  Identities=24%  Similarity=0.230  Sum_probs=92.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+....   ++|+++|+||+| ...+.+..+++..++..
T Consensus       100 t~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~---~~piilv~NK~D-~~~~~~~~~~~~~~~~~  175 (208)
T 3clv_A          100 TAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISS---NYIIILVANKID-KNKFQVDILEVQKYAQD  175 (208)
T ss_dssp             CTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS---CCEEEEEEECTT-CC-CCSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhC---CCcEEEEEECCC-cccccCCHHHHHHHHHH
Confidence            7898874  88899999999999999999999999999999998765   399999999999 55577888999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||++|. ||+++|++|++.+.+
T Consensus       176 ~~~~~~~~Sa~~~~-~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          176 NNLLFIQTSAKTGT-NIKNIFYMLAEEIYK  204 (208)
T ss_dssp             TTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCcEEEEecCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999988765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.82  E-value=7.1e-20  Score=135.09  Aligned_cols=105  Identities=24%  Similarity=0.308  Sum_probs=94.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+ ..+.+..+++..++..
T Consensus        76 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~piilv~nK~Dl-~~~~~~~~~~~~~~~~  153 (213)
T 3cph_A           76 TAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDM-ETRVVTADQGEALAKE  153 (213)
T ss_dssp             CTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHT-TTCSEEEEEEECTTC-SSCCSCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCEEEEEECCCC-cccccCHHHHHHHHHH
Confidence            7898873  78899999999999999999999999999999988765 357999999999999 4567778888889998


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+++|||++|. ||+++|.+|.+.+.+
T Consensus       154 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          154 LGIPFIESSAKNDD-NVNEIFFTLAKLIQE  182 (213)
T ss_dssp             HTCCEEECBTTTTB-SSHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999988865

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.82  E-value=2.2e-21  Score=142.35  Aligned_cols=106  Identities=28%  Similarity=0.351  Sum_probs=85.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+.... ..++|++||+||+|+.+.+.+..+++..++..
T Consensus        89 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~  167 (199)
T 3l0i_B           89 TAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYA-SENVNKLLVGNKCDLTTKKVVDYTTAKEFADS  167 (199)
T ss_dssp             CTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC--CCSEEEEC-CCSSCC--CCCCSCC-CHHHHT
T ss_pred             CCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-cCCCCEEEEEECccCCccccCCHHHHHHHHHH
Confidence            7899874  78899999999999999999999999999999997765 35799999999999987777777778888999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+++|||++|. ||+++|++|++.+.+
T Consensus       168 ~~~~~~~vSA~~g~-gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          168 LGIPFLETSAKNAT-NVEQSFMTMAAEIKK  196 (199)
T ss_dssp             TTCCBCCCCC---H-HHHHHHHHHTTTTTT
T ss_pred             cCCeEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999877654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.82  E-value=3.5e-20  Score=131.93  Aligned_cols=105  Identities=17%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH-----
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR-----   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-----   74 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+...  .++..     
T Consensus        58 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~  135 (171)
T 1upt_A           58 LGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMT--SSEMANSLGL  135 (171)
T ss_dssp             ECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTG
T ss_pred             CCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCC--HHHHHHHhCc
Confidence            7899873  88899999999999999999999999999998887653236799999999999975432  22221     


Q ss_pred             HHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        75 ~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++...++.+++|||++|. ||+++|++|++.+.+
T Consensus       136 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          136 PALKDRKWQIFKTSATKGT-GLDEAMEWLVETLKS  169 (171)
T ss_dssp             GGCTTSCEEEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred             hhccCCceEEEECcCCCCc-CHHHHHHHHHHHHhh
Confidence            2233456789999999999 999999999998875

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.82  E-value=2.6e-20  Score=135.94  Aligned_cols=107  Identities=17%  Similarity=0.174  Sum_probs=85.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-------CCCcEEEEEeCCCCCCCcc---CC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-------NNVPVMLLANKLDLEHLRQ---VD   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-------~~~piilv~NK~Dl~~~~~---v~   69 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+......       .++|+|||+||+|+.....   +.
T Consensus        70 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~  149 (199)
T 4bas_A           70 MGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTAAELV  149 (199)
T ss_dssp             ECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCHHHHH
T ss_pred             CCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCHHHHH
Confidence            7899874  8889999999999999999999999999999888765211       2799999999999976432   11


Q ss_pred             HHHHHH-HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          70 ESLGRS-TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        70 ~~~~~~-~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...... ++...++.|++|||++|. ||+++|++|++.+.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          150 EILDLTTLMGDHPFVIFASNGLKGT-GVHEGFSWLQETASR  189 (199)
T ss_dssp             HHHTHHHHHTTSCEEEEECBTTTTB-THHHHHHHHHHHHHH
T ss_pred             HHhcchhhccCCeeEEEEeeCCCcc-CHHHHHHHHHHHHHH
Confidence            111111 125567889999999999 999999999998876

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.82  E-value=9.4e-20  Score=132.97  Aligned_cols=106  Identities=26%  Similarity=0.378  Sum_probs=93.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|+++.  ++..|+.++|++|+|||++++.+|+.+..|+..+...... .++|++||+||+|+.. +.+..+++..++.
T Consensus        63 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~  141 (199)
T 2gf0_A           63 TTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQ  141 (199)
T ss_dssp             CCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHH
T ss_pred             CCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHH
Confidence            7899874  8889999999999999999999999999888877765421 4689999999999975 6677888888999


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++.++++||++|. ||+++|++|++.+.+
T Consensus       142 ~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          142 EWKCAFMETSAKMNY-NVKELFQELLTLETR  171 (199)
T ss_dssp             HHTCEEEECBTTTTB-SHHHHHHHHHHHCSS
T ss_pred             HhCCeEEEEecCCCC-CHHHHHHHHHHHHhh
Confidence            999999999999999 999999999987765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.82  E-value=3.3e-20  Score=136.83  Aligned_cols=103  Identities=22%  Similarity=0.328  Sum_probs=90.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLR------------   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+. .|+..+....  .++|++||+||+|+.+..            
T Consensus        85 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  162 (204)
T 4gzl_A           85 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT  162 (204)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--SSCCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC--CCCCEEEEEechhhccchhhhhhhhccccc
Confidence            7899874  8888999999999999999999999997 7999988875  679999999999996543            


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .+..+++..++...++ .+++|||++|. ||+++|++|++.+
T Consensus       163 ~v~~~~~~~~~~~~~~~~~~~~SA~~g~-gi~~l~~~l~~~~  203 (204)
T 4gzl_A          163 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAV  203 (204)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHhcCCcEEEEeeCCCCC-CHHHHHHHHHHHh
Confidence            3778888899998885 59999999999 9999999998754

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.81  E-value=2.9e-20  Score=135.91  Aligned_cols=105  Identities=16%  Similarity=0.173  Sum_probs=80.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----   75 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+.+..  ..++...    
T Consensus        80 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~--~~~~i~~~~~~  157 (192)
T 2b6h_A           80 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM--PVSELTDKLGL  157 (192)
T ss_dssp             CC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTG
T ss_pred             CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC--CHHHHHHHhCc
Confidence            8999873  8889999999999999999999999999999888765434679999999999996532  2222222    


Q ss_pred             -HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 -TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 -~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                       ++...++.+++|||++|. ||+++|++|++.+.+
T Consensus       158 ~~~~~~~~~~~~~SA~~g~-gi~~l~~~l~~~i~~  191 (192)
T 2b6h_A          158 QHLRSRTWYVQATCATQGT-GLYDGLDWLSHELSK  191 (192)
T ss_dssp             GGCSSCCEEEEECBTTTTB-THHHHHHHHHHHTTT
T ss_pred             ccccCCceEEEECcCCCcC-CHHHHHHHHHHHHhc
Confidence             222345679999999999 999999999987754

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.81  E-value=5.8e-20  Score=136.81  Aligned_cols=107  Identities=20%  Similarity=0.254  Sum_probs=93.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+....  .++|++||+||+|+.+... . .+...++..
T Consensus        71 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~  146 (221)
T 3gj0_A           71 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKV-K-AKSIVFHRK  146 (221)
T ss_dssp             ECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--TTCCEEEEEECTTSSSCSS-C-GGGCCHHHH
T ss_pred             CCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC--CCCCEEEEEECCccccccc-c-HHHHHHHHH
Confidence            7898873  88999999999999999999999999999999999876  6899999999999975433 2 255667788


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPS  113 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~  113 (173)
                      .++.|++|||++|. ||+++|.+|++.+...+..
T Consensus       147 ~~~~~~~~Sa~~~~-gi~~l~~~l~~~l~~~~~~  179 (221)
T 3gj0_A          147 KNLQYYDISAKSNY-NFEKPFLWLARKLIGDPNL  179 (221)
T ss_dssp             HTCEEEECBGGGTB-TTTHHHHHHHHHHHTCTTC
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHhCccc
Confidence            89999999999999 9999999999999875443

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.81  E-value=6.8e-20  Score=134.19  Aligned_cols=102  Identities=17%  Similarity=0.186  Sum_probs=85.8

Q ss_pred             CCCCCCc--cH---hhhcccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-------Ccc
Q psy2792           2 TIGLTEG--TL---TAMICWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-------LRQ   67 (173)
Q Consensus         2 TaG~e~~--~~---~~y~~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-------~~~   67 (173)
                      |+|++++  +.   ..||+++|++|+|||+++.  ++++.+..|+.++....  .++|++|||||+|+.+       .+.
T Consensus        76 t~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~  153 (196)
T 3llu_A           76 FPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN--PDMNFEVFIHKVDGLSDDHKIETQRD  153 (196)
T ss_dssp             CCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC--TTCEEEEEEECGGGSCHHHHHHHHHH
T ss_pred             CCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC--CCCcEEEEEeccccCchhhhhHHHhH
Confidence            7999883  44   7999999999999999997  77888888888876544  6899999999999754       345


Q ss_pred             CCHHHHHHHhh----hcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          68 VDESLGRSTAV----KYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        68 v~~~~~~~~~~----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      +..+++..++.    ..++.|++|||++ . ||+++|..|++.+
T Consensus       154 v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~-~v~~~f~~l~~~l  195 (196)
T 3llu_A          154 IHQRANDDLADAGLEKLHLSFYLTSIYD-H-SIFEAFSKVVQKL  195 (196)
T ss_dssp             HHHHHHHHHHHTTCTTSCEEEEEECTTS-T-HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhhcCCcceEEEEech-h-hHHHHHHHHHHHh
Confidence            66666777887    6788999999999 9 9999999999865

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.81  E-value=1.8e-19  Score=130.69  Aligned_cols=108  Identities=11%  Similarity=0.124  Sum_probs=84.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA--   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~--   77 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+  ....++.....  
T Consensus        67 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~--~~~~~~i~~~~~~  144 (187)
T 1zj6_A           67 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKE--CMTVAEISQFLKL  144 (187)
T ss_dssp             CCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT--CCCHHHHHHHHTG
T ss_pred             CCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC--CCCHHHHHHHhCh
Confidence            8999874  88899999999999999999999999999999988753236799999999999974  23344444332  


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                         ...++.+++|||++|. ||+++|++|++.+.....
T Consensus       145 ~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~~~~  181 (187)
T 1zj6_A          145 TSIKDHQWHIQACCALTGE-GLCQGLEWMMSRLKIRLE  181 (187)
T ss_dssp             GGCCSSCEEEEECBTTTTB-THHHHHHHHHHHHCC---
T ss_pred             hhhcCCCcEEEEccCCCCc-CHHHHHHHHHHHHHHHhh
Confidence               2346789999999999 999999999998876443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.81  E-value=2.2e-19  Score=131.82  Aligned_cols=106  Identities=25%  Similarity=0.318  Sum_probs=92.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC---CCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV---NNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+..|+..+......   .++|++||+||+|+. .+.+..+++..+
T Consensus        64 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~  142 (207)
T 1vg8_A           64 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE-NRQVATKRAQAW  142 (207)
T ss_dssp             ECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS-CCCSCHHHHHHH
T ss_pred             CCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc-ccccCHHHHHHH
Confidence            7898873  7889999999999999999999999999999988776521   468999999999997 466777888888


Q ss_pred             hh-hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 AV-KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 ~~-~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +. ..++.++++||++|. ||+++|++|++.+.+
T Consensus       143 ~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~  175 (207)
T 1vg8_A          143 CYSKNNIPYFETSAKEAI-NVEQAFQTIARNALK  175 (207)
T ss_dssp             HHHTTSCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             HHhcCCceEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            87 667889999999999 999999999998876

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.80  E-value=5.8e-20  Score=133.03  Aligned_cols=105  Identities=17%  Similarity=0.144  Sum_probs=83.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST---   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~---   76 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+...  .++....   
T Consensus        67 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~  144 (181)
T 1fzq_A           67 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNL  144 (181)
T ss_dssp             CSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTG
T ss_pred             CCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCC--HHHHHHHhCc
Confidence            8999874  77899999999999999999999999999998876643236799999999999975432  2333222   


Q ss_pred             --hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                        +...++.+++|||++|. ||+++|++|++.+.+
T Consensus       145 ~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          145 HTIRDRVWQIQSCSALTGE-GVQDGMNWVCKNVNA  178 (181)
T ss_dssp             GGCCSSCEEEEECCTTTCT-THHHHHHHHHHTC--
T ss_pred             hhccCCceEEEEccCCCCC-CHHHHHHHHHHHHHh
Confidence              12345679999999999 999999999987654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.80  E-value=5.8e-20  Score=133.41  Aligned_cols=105  Identities=19%  Similarity=0.186  Sum_probs=85.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----   75 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+...  .++...    
T Consensus        73 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~  150 (189)
T 2x77_A           73 LGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAAS--EAEIAEQLGV  150 (189)
T ss_dssp             ECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC--HHHHHHHTTG
T ss_pred             CCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC--HHHHHHHhCh
Confidence            7999874  88889999999999999999999999999998887654346799999999999975422  222222    


Q ss_pred             -HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 -TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 -~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                       .+...++.+++|||++|. ||+++|++|.+.+.+
T Consensus       151 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  184 (189)
T 2x77_A          151 SSIMNRTWTIVKSSSKTGD-GLVEGMDWLVERLRE  184 (189)
T ss_dssp             GGCCSSCEEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             hhccCCceEEEEccCCCcc-CHHHHHHHHHHHHHh
Confidence             223345689999999999 999999999998865

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.80  E-value=3.5e-20  Score=145.81  Aligned_cols=105  Identities=14%  Similarity=0.155  Sum_probs=84.9

Q ss_pred             CCCCCCc-----cHhhhcccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC-------cc
Q psy2792           2 TIGLTEG-----TLTAMICWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL-------RQ   67 (173)
Q Consensus         2 TaG~e~~-----~~~~y~~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~-------~~   67 (173)
                      |||||++     +++.||++|+++|+|||+++.  ++++.+..|+.++....  +++|++|||||+||.+.       ++
T Consensus        53 TAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~--~~ipillvgNK~DL~~~~~R~~~~R~  130 (331)
T 3r7w_B           53 LPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN--PSINIEVLIHKVDGLSEDFKVDAQRD  130 (331)
T ss_dssp             CCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC--TTCEEEEECCCCCSSCSHHHHHHHHH
T ss_pred             CCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC--CCCcEEEEEECcccCchhhhhhHHHH
Confidence            8999986     368999999999999999998  33344444455555543  68999999999999753       46


Q ss_pred             CCHHHHHHHhhh----cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          68 VDESLGRSTAVK----YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        68 v~~~~~~~~~~~----~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      |..+++.++++.    +++.||||||++ . ||.++|..|+..++.+
T Consensus       131 V~~~~~~~la~~~~~~~~i~f~eTSAkd-~-nV~eAFs~iv~~li~~  175 (331)
T 3r7w_B          131 IMQRTGEELLELGLDGVQVSFYLTSIFD-H-SIYEAFSRIVQKLIPE  175 (331)
T ss_dssp             HHHHHHHTTSSSSCSCCCEEEECCCSSS-S-HHHHHHHHHHTTSSTT
T ss_pred             hhHHHHHHHHhhcccccCceEEEeccCC-C-cHHHHHHHHHHHHHhh
Confidence            777888888886    678999999997 6 8999999999887753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.1e-18  Score=126.93  Aligned_cols=105  Identities=16%  Similarity=0.175  Sum_probs=86.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC--CCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV--NNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+......  .++|++||+||+|+.+  .+..++...++
T Consensus        74 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~  151 (190)
T 2h57_A           74 MSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD--AVTSVKVSQLL  151 (190)
T ss_dssp             ECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT--CCCHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc--CCCHHHHHHHh
Confidence            7899874  8889999999999999999999999999999988876432  5799999999999964  34455555554


Q ss_pred             h-----hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 V-----KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~-----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .     ..++.+++|||++|. ||+++|++|.+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          152 CLENIKDKPWHICASDAIKGE-GLQEGVDWLQDQIQT  187 (190)
T ss_dssp             TGGGCCSSCEEEEECBTTTTB-THHHHHHHHHHHC--
T ss_pred             ChhhccCCceEEEEccCCCCc-CHHHHHHHHHHHHHH
Confidence            2     236789999999999 999999999987643

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.80  E-value=6.8e-20  Score=139.99  Aligned_cols=104  Identities=20%  Similarity=0.196  Sum_probs=84.2

Q ss_pred             CCCCCCc--cHhhhcc---------------------cCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEE
Q psy2792           2 TIGLTEG--TLTAMIC---------------------WADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLL   56 (173)
Q Consensus         2 TaG~e~~--~~~~y~~---------------------~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv   56 (173)
                      |||+++.  ++..||+                     +||++|+|||++++  .||+.+..|+.++.......++|++||
T Consensus       125 ~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV  204 (255)
T 3c5h_A          125 RAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVV  204 (255)
T ss_dssp             HHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             cchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEE
Confidence            5677663  6667776                     89999999999998  999999999999887622357999999


Q ss_pred             EeCCCCCCCccCCHHHHHHHhhh-cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          57 ANKLDLEHLRQVDESLGRSTAVK-YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        57 ~NK~Dl~~~~~v~~~~~~~~~~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +||+|+.+.+.+  +++..++.. .++.|++|||++|. ||+++|++|++.+.
T Consensus       205 ~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~-gv~elf~~l~~~l~  254 (255)
T 3c5h_A          205 LTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNV-NVDLAFSTLVQLID  254 (255)
T ss_dssp             EECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTB-SHHHHHHHHHHHHH
T ss_pred             EEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCC-CHHHHHHHHHHHhc
Confidence            999999765554  466777766 47899999999999 99999999998764

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.79  E-value=6e-19  Score=138.32  Aligned_cols=105  Identities=22%  Similarity=0.289  Sum_probs=94.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+.            +
T Consensus       210 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~  287 (332)
T 2wkq_A          210 TAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT  287 (332)
T ss_dssp             ECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC--CCCcEEEEEEchhcccccchhhhccccccc
Confidence            7899874  8889999999999999999999999997 6998888765  48999999999998643            5


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+..+++..++...++ .|++|||++|. ||+++|+.|++.++.
T Consensus       288 ~v~~~~~~~~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          288 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAVLC  330 (332)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHcCCcEEEEecCCCCc-CHHHHHHHHHHHHhc
Confidence            6888899999999997 89999999999 999999999998875

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.78  E-value=8e-19  Score=126.73  Aligned_cols=102  Identities=12%  Similarity=0.159  Sum_probs=82.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA--   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~--   77 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.  ...++.....  
T Consensus        72 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~i~~~~~~  149 (181)
T 2h17_A           72 IGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC--MTVAEISQFLKL  149 (181)
T ss_dssp             ESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC--CCHHHHHHHTTG
T ss_pred             CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC--CCHHHHHHHhCc
Confidence            7899873  888999999999999999999999999999988876532367999999999999652  3344444332  


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                         ...++.+++|||++|. ||+++|++|++.
T Consensus       150 ~~~~~~~~~~~~~Sa~~g~-gi~~l~~~l~~~  180 (181)
T 2h17_A          150 TSIKDHQWHIQACCALTGE-GLCQGLEWMMSR  180 (181)
T ss_dssp             GGCCSSCEEEEECBTTTTB-THHHHHHHHHTC
T ss_pred             ccccCCceEEEEccCCCCc-CHHHHHHHHHhh
Confidence               2345689999999999 999999999753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.78  E-value=1.4e-18  Score=125.64  Aligned_cols=106  Identities=17%  Similarity=0.169  Sum_probs=86.5

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh--
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA--   77 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~--   77 (173)
                      |+|+++  .++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+..  ..++.....  
T Consensus        69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~  146 (186)
T 1ksh_A           69 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL--SCNAIQEALEL  146 (186)
T ss_dssp             ECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC--CHHHHHHHTTG
T ss_pred             CCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC--CHHHHHHHhCh
Confidence            789877  48889999999999999999999999999999888765333679999999999997543  233333322  


Q ss_pred             ---hhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          78 ---VKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        78 ---~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                         ...++.+++|||++|. ||+++|++|.+.+.+.
T Consensus       147 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~i~~~  181 (186)
T 1ksh_A          147 DSIRSHHWRIQGCSAVTGE-DLLPGIDWLLDDISSR  181 (186)
T ss_dssp             GGCCSSCEEEEECCTTTCT-THHHHHHHHHHHHHTC
T ss_pred             hhccCCceEEEEeeCCCCC-CHHHHHHHHHHHHHhc
Confidence               2346789999999999 9999999999988764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.78  E-value=1.4e-19  Score=131.65  Aligned_cols=105  Identities=18%  Similarity=0.219  Sum_probs=83.0

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST---   76 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~---   76 (173)
                      |+|+++  .++..|++++|++|+|||++++++|+.+..|+..+.......++|++||+||+|+...  ...++....   
T Consensus        74 t~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~  151 (188)
T 1zd9_A           74 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA--LDEKELIEKMNL  151 (188)
T ss_dssp             ECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC--CCHHHHHHHTTG
T ss_pred             CCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC--CCHHHHHHHhCh
Confidence            788877  3888999999999999999999999999999988876532367999999999999753  223332221   


Q ss_pred             --hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                        +...++.+++|||++|. ||+++|++|++.+.+
T Consensus       152 ~~~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          152 SAIQDREICCYSISCKEKD-NIDITLQWLIQHSKS  185 (188)
T ss_dssp             GGCCSSCEEEEECCTTTCT-THHHHHHHHHHTCC-
T ss_pred             hhhccCCeeEEEEECCCCC-CHHHHHHHHHHHHHh
Confidence              12345679999999999 999999999986644

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=3.9e-19  Score=128.02  Aligned_cols=105  Identities=16%  Similarity=0.147  Sum_probs=82.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV-   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~-   78 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.......++|+++|+||+|+.+.  ...++...... 
T Consensus        69 t~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~i~~~~~~  146 (183)
T 1moz_A           69 LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNL  146 (183)
T ss_dssp             EC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTT
T ss_pred             CCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC--CCHHHHHHHhCc
Confidence            7898873  888999999999999999999999999999988877543467999999999999653  33444443332 


Q ss_pred             ----hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 ----KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                          ..++.+++|||++|. ||+++|++|.+.+.+
T Consensus       147 ~~~~~~~~~~~~~Sa~~~~-gi~~l~~~l~~~~~~  180 (183)
T 1moz_A          147 VELKDRSWSIVASSAIKGE-GITEGLDWLIDVIKE  180 (183)
T ss_dssp             TTCCSSCEEEEEEBGGGTB-THHHHHHHHHHHHHH
T ss_pred             ccccCCceEEEEccCCCCc-CHHHHHHHHHHHHHh
Confidence                234579999999999 999999999988764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.77  E-value=2e-19  Score=130.38  Aligned_cols=105  Identities=20%  Similarity=0.267  Sum_probs=87.7

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC---HHHHHH
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDK-ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD---ESLGRS   75 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~-~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~---~~~~~~   75 (173)
                      |||+++  .+++.|++++|++++|||++++ .+|+.+..|+.++....  +++|++|||||+|+.+.+.+.   .+.+..
T Consensus        63 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~  140 (184)
T 2zej_A           63 FAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA--SSSPVILVGTHLDVSDEKQRKACMSKITKE  140 (184)
T ss_dssp             ECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC--TTCEEEEEEECGGGCCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC--CCCcEEEEEECCCcccchhhHHHHHHHHHH
Confidence            788877  3788999999999999999997 58999999999987764  579999999999997654432   234566


Q ss_pred             HhhhcCCe----EEEEcccCC-cccHHHHHHHHHHHHhc
Q psy2792          76 TAVKYNCT----FHEVSVADN-SPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~~~~~~----~~e~Sak~g-~~~v~~lf~~l~~~i~~  109 (173)
                      ++..+++.    |+++||+++ . +++++|..|.+.+.+
T Consensus       141 ~~~~~~~~~~~~~~~~Sa~~~~~-~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          141 LLNKRGFPAIRDYHFVNATEESD-ALAKLRKTIINESLN  178 (184)
T ss_dssp             TTTCTTSCEEEEEEECCTTSCCH-HHHHHHHHHHHHHHC
T ss_pred             HHHhcCCcchhheEEEecccCch-hHHHHHHHHHHHHhc
Confidence            77777776    999999999 6 899999999988876

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.63  E-value=2.8e-20  Score=136.86  Aligned_cols=103  Identities=21%  Similarity=0.310  Sum_probs=89.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCc------------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLR------------   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~------------   66 (173)
                      |+|+++.  ++..|++++|++|+|||++++.+|+.+. .|+..+....  .++|+++|+||+|+.+..            
T Consensus        85 t~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~--~~~piilv~NK~Dl~~~~~~~~~~~~~~~~  162 (204)
T 3th5_A           85 TAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT  162 (204)
Confidence            7899874  8888999999999999999999999987 7988887765  479999999999997543            


Q ss_pred             cCCHHHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          67 QVDESLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .+..+++..++...++ .+++|||++|. ||+++|++|++.+
T Consensus       163 ~v~~~~~~~~~~~~~~~~~~~vSA~~g~-gi~~l~~~l~~~i  203 (204)
T 3th5_A          163 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAV  203 (204)
Confidence            5566777888888887 89999999999 9999999998765

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.76  E-value=3.8e-19  Score=141.76  Aligned_cols=107  Identities=12%  Similarity=0.080  Sum_probs=90.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID----------KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR---   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~---   66 (173)
                      ||||++.  ++.+||++++++|||||+++          ..+|++...|+..+.......++|+||||||+||...+   
T Consensus       200 t~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~~piiLv~NK~DL~~~ki~~  279 (353)
T 1cip_A          200 VGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKK  279 (353)
T ss_dssp             ECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHHTT
T ss_pred             CCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccCCcEEEEEECcCchhhhccc
Confidence            7999874  99999999999999999999          46799999999988875433679999999999985332   


Q ss_pred             ------------cCCHHHHHHHhh-----------hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 ------------QVDESLGRSTAV-----------KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ------------~v~~~~~~~~~~-----------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                  .++.+++..++.           ..++.+++|||+++. ||.++|.++++.+..
T Consensus       280 ~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~-nV~~vF~~v~~~i~~  344 (353)
T 1cip_A          280 SPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK-NVQFVFDAVTDVIIK  344 (353)
T ss_dssp             SCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred             cchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch-hHHHHHHHHHHHHHH
Confidence                        367788888776           356789999999999 999999999998875

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=137.25  Aligned_cols=105  Identities=17%  Similarity=0.190  Sum_probs=80.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-H--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-T--   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~--   76 (173)
                      |+|++++  ++..|++++|++|+|||++++.+|+.+..|+..+.......++|+|||+||+|+.+...  .++... +  
T Consensus       216 t~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~--~~~i~~~~~~  293 (329)
T 3o47_A          216 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEITDKLGL  293 (329)
T ss_dssp             CC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTC
T ss_pred             CCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC--HHHHHHHhch
Confidence            8999884  89999999999999999999999999998887776654346899999999999975432  222222 2  


Q ss_pred             --hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                        +...++.|++|||++|. ||+++|++|++.+.+
T Consensus       294 ~~~~~~~~~~~~vSAk~g~-gi~el~~~l~~~l~~  327 (329)
T 3o47_A          294 HSLRHRNWYIQATCATSGD-GLYEGLDWLSNQLRN  327 (329)
T ss_dssp             TTCCSSCEEEEECBTTTTB-THHHHHHHHHHHHTC
T ss_pred             hhhhcCCCEEEEEECCCCc-CHHHHHHHHHHHHHh
Confidence              22335679999999999 999999999998865

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.74  E-value=1.3e-18  Score=138.61  Aligned_cols=107  Identities=12%  Similarity=0.104  Sum_probs=86.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLI----------DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--   67 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--   67 (173)
                      ||||+++  ++.+||++++++|+|||++          +..+|+++..|+..+.......++|+||||||+||.+++.  
T Consensus       190 taGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~  269 (354)
T 2xtz_A          190 VGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLD  269 (354)
T ss_dssp             ECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTT
T ss_pred             CCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECcchhhhhccc
Confidence            7999984  9999999999999999998          7889999999999888754336799999999999854322  


Q ss_pred             C-------------------CHHHHHHHhhh----------------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          68 V-------------------DESLGRSTAVK----------------YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        68 v-------------------~~~~~~~~~~~----------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +                   +.+++..++..                ..+.+++|||+++. ||+++|.++++.+.+
T Consensus       270 v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~-nV~~vF~~v~~~I~~  345 (354)
T 2xtz_A          270 VPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK-LVKKTFKLVDETLRR  345 (354)
T ss_dssp             SCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch-hHHHHHHHHHHHHHH
Confidence            1                   14566666432                12446899999999 999999999988865

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.73  E-value=4.3e-18  Score=137.44  Aligned_cols=107  Identities=15%  Similarity=0.130  Sum_probs=87.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID----------KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--   67 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--   67 (173)
                      ||||+++  ++.+||++++++|||||+++          ..+|+++..|+..+.......++|+||||||+||...+.  
T Consensus       224 taGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~DL~~~ki~~  303 (402)
T 1azs_C          224 VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLA  303 (402)
T ss_dssp             ECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHHHHHHHHHH
T ss_pred             cchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChhhhhhhhcc
Confidence            7999884  99999999999999999999          889999999999988764346899999999999854332  


Q ss_pred             -C---------------------------CHHHHHHHh-----hh--------cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          68 -V---------------------------DESLGRSTA-----VK--------YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        68 -v---------------------------~~~~~~~~~-----~~--------~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                       +                           +.+++..++     ..        .++.+++|||+++. ||+++|..+.+.
T Consensus       304 ~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~-nV~~vF~~v~~~  382 (402)
T 1azs_C          304 GKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE-NIRRVFNDCRDI  382 (402)
T ss_dssp             CSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHH-HHHHHHHHHHHH
T ss_pred             cccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCc-CHHHHHHHHHHH
Confidence             2                           134555553     21        24667899999999 999999999988


Q ss_pred             Hhc
Q psy2792         107 SRG  109 (173)
Q Consensus       107 i~~  109 (173)
                      +..
T Consensus       383 I~~  385 (402)
T 1azs_C          383 IQR  385 (402)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.72  E-value=4.4e-18  Score=136.03  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=84.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID----------KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR---   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----------~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~---   66 (173)
                      ||||+.+  ++.+||++++++|||||+++          ..+|++...|+..+.......++|+|||+||+||..++   
T Consensus       208 t~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~DL~~~ki~~  287 (362)
T 1zcb_A          208 VGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV  287 (362)
T ss_dssp             ECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTT
T ss_pred             ccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChhhhhhhccc
Confidence            7999874  99999999999999999999          67999999999988875333679999999999986322   


Q ss_pred             -------------cCCHHHHHHHh--------h---hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 -------------QVDESLGRSTA--------V---KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 -------------~v~~~~~~~~~--------~---~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                   .++.+++..++        .   ..++.+++|||+++. ||+++|.++.+.+.+
T Consensus       288 ~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~-nV~~vF~~v~~~i~~  353 (362)
T 1zcb_A          288 VSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE-NIRLVFRDVKDTILH  353 (362)
T ss_dssp             CCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred             cchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch-hHHHHHHHHHHHHHH
Confidence                         26677777765        1   345778999999999 999999999998865

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.72  E-value=9.8e-17  Score=117.53  Aligned_cols=106  Identities=32%  Similarity=0.426  Sum_probs=94.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...|+.++|++|+|||+++..+|+++..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..
T Consensus        61 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~  139 (199)
T 2f9l_A           61 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK  139 (199)
T ss_dssp             CSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCeEEEEEECcccccccCcCHHHHHHHHHH
Confidence            7888763  77889999999999999999999999989998877653 35789999999999987777888889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.++++||+++. |++++|++|.+.+.+
T Consensus       140 ~~~~~~d~Sal~~~-~i~~l~~~l~~~~~~  168 (199)
T 2f9l_A          140 NNLSFIETSALDST-NVEEAFKNILTEIYR  168 (199)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCeEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999988865

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.71  E-value=6.9e-18  Score=133.02  Aligned_cols=109  Identities=15%  Similarity=0.081  Sum_probs=90.3

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLI----------DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR---   66 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~---   66 (173)
                      ||||++  .++.+||++++++|+|||++          +..+|++...|+..+.......++|++|||||+||..++   
T Consensus       174 tgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL~~~ki~~  253 (327)
T 3ohm_A          174 VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMY  253 (327)
T ss_dssp             ECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHHHHHHTTT
T ss_pred             cCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchhhhhhhcc
Confidence            799987  49999999999999999665          667888888888888765434679999999999986543   


Q ss_pred             -------------cCCHHHHHHH----------hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          67 -------------QVDESLGRST----------AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        67 -------------~v~~~~~~~~----------~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                                   .++.+++..+          +...++.+++|||+++. ||+.+|..+.+.+++..
T Consensus       254 ~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~-nV~~vF~~v~~~Il~~~  320 (327)
T 3ohm_A          254 SHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE-NIRFVFAAVKDTILQLN  320 (327)
T ss_dssp             SCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHH-HHHHHHHHHHHHHHHTT
T ss_pred             chHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCH-HHHHHHHHHHHHHHHHh
Confidence                         4677888877          34456778999999999 99999999999998743

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.70  E-value=2e-17  Score=129.30  Aligned_cols=91  Identities=18%  Similarity=0.114  Sum_probs=77.0

Q ss_pred             ccHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC--CeE
Q psy2792           8 GTLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN--CTF   84 (173)
Q Consensus         8 ~~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~   84 (173)
                      .+++.||+++|++|+|||+++++ +|+.+..|+..+..    .++|++||+||+||.+.+.+  +++..++..++  +.|
T Consensus        76 ~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~----~~~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~  149 (301)
T 1u0l_A           76 LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPI  149 (301)
T ss_dssp             EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCE
T ss_pred             eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcE
Confidence            38899999999999999999998 79999999988765    46999999999999754433  34566676666  889


Q ss_pred             EEEcccCCcccHHHHHHHHHH
Q psy2792          85 HEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        85 ~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      ++|||++|. ||+++|..+..
T Consensus       150 ~~~SAktg~-gv~~lf~~l~g  169 (301)
T 1u0l_A          150 VKTSAKTGM-GIEELKEYLKG  169 (301)
T ss_dssp             EECCTTTCT-THHHHHHHHSS
T ss_pred             EEEECCCCc-CHHHHHHHhcC
Confidence            999999999 99999987754

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.70  E-value=2.6e-17  Score=117.26  Aligned_cols=97  Identities=13%  Similarity=0.029  Sum_probs=78.1

Q ss_pred             CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.        +...|++  ++|++++|||+++.++   ...|+.++.+    .++|+++|+||+|+...+.+.. 
T Consensus        57 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~---~~~~~~~~~~----~~~p~ilv~nK~Dl~~~~~~~~-  128 (165)
T 2wji_A           57 LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALER---NLYLTLQLME----MGANLLLALNKMDLAKSLGIEI-  128 (165)
T ss_dssp             CCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHHH---HHHHHHHHHH----TTCCEEEEEECHHHHHHTTCCC-
T ss_pred             CCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchhH---hHHHHHHHHh----cCCCEEEEEEchHhccccChhh-
Confidence            8998863        4467776  8999999999998543   4558777765    3589999999999875555543 


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ++..++..+++.++++||++|. ||+++|++|++.+
T Consensus       129 ~~~~~~~~~~~~~~~~SA~~~~-~v~~l~~~l~~~~  163 (165)
T 2wji_A          129 DVDKLEKILGVKVVPLSAAKKM-GIEELKKAISIAV  163 (165)
T ss_dssp             CHHHHHHHHTSCEEECBGGGTB-SHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCEEEEEcCCCC-CHHHHHHHHHHHh
Confidence            4667788888999999999999 9999999998865

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.70  E-value=9.4e-17  Score=120.15  Aligned_cols=96  Identities=11%  Similarity=0.102  Sum_probs=75.5

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH---HHHHHhhhcC--Ce
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDY--AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES---LGRSTAVKYN--CT   83 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~---~~~~~~~~~~--~~   83 (173)
                      ..++..+|++|+|||++++.+|+.  ...|+..+....  .++|+++|+||+|+.+.+.+..+   ....++...+  +.
T Consensus       103 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~--~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (228)
T 2qu8_A          103 TALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF--SNKSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIK  180 (228)
T ss_dssp             HHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC---CCCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEE
T ss_pred             HHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh--cCCcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCce
Confidence            356889999999999999888752  245666665542  47999999999999877777654   4556677776  88


Q ss_pred             EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          84 FHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        84 ~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++|||++|. ||+++|++|++.+.+
T Consensus       181 ~~~~SA~~g~-gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          181 FSSFSTLTGV-GVEQAKITACELLKN  205 (228)
T ss_dssp             EEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             EEEEecccCC-CHHHHHHHHHHHHHH
Confidence            9999999999 999999999998875

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.69  E-value=2.9e-16  Score=114.55  Aligned_cols=104  Identities=33%  Similarity=0.455  Sum_probs=92.1

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .+...|+++++++++|||+++..+|+++..|+..+.... ..+.|+++|+||+|+.+.+.+..+++..++..
T Consensus        85 t~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~  163 (191)
T 1oix_A           85 TAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK  163 (191)
T ss_dssp             ECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc-CCCCcEEEEEECcccccccccCHHHHHHHHHH
Confidence            678877  478889999999999999999999999989998876653 35789999999999987777888889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++.++++||+++. |++++|+.|.+.+
T Consensus       164 ~~~~~ld~Sald~~-~v~~l~~~l~~~i  190 (191)
T 1oix_A          164 NGLSFIETSALDST-NVEAAFQTILTEI  190 (191)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHh
Confidence            99999999999999 9999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.69  E-value=2.6e-17  Score=121.59  Aligned_cols=104  Identities=15%  Similarity=0.114  Sum_probs=71.5

Q ss_pred             CCCCCCc---cHhhhcccCcEEEEEEeCCChh-hHHHHHH-HHHHHHhhh-CCCCCcEEEEEeCCCCCCCccCC------
Q psy2792           2 TIGLTEG---TLTAMICWADGCIIVYSLIDKE-SFDYAVS-TLQNLQRHR-AVNNVPVMLLANKLDLEHLRQVD------   69 (173)
Q Consensus         2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~-s~~~~~~-~~~~i~~~~-~~~~~piilv~NK~Dl~~~~~v~------   69 (173)
                      |||+++.   ++..|++++|++|+|||+++.. ++..+.. |...+.... ...++|++||+||+|+.......      
T Consensus        61 t~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~l  140 (214)
T 2fh5_B           61 LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQL  140 (214)
T ss_dssp             CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHH
T ss_pred             CCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccHHHHHHHH
Confidence            7899873   6788999999999999999964 5666655 444443321 13579999999999997543211      


Q ss_pred             ----------------------------HHHHHHHhh-hc--CCeEEEEcccCC------cccHHHHHHHHHHH
Q psy2792          70 ----------------------------ESLGRSTAV-KY--NCTFHEVSVADN------SPAIYQAFDHLLTE  106 (173)
Q Consensus        70 ----------------------------~~~~~~~~~-~~--~~~~~e~Sak~g------~~~v~~lf~~l~~~  106 (173)
                                                  .+++..++. .+  ++.|++|||++|      . ||+++|++|++.
T Consensus       141 ~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~-gv~~lf~~l~~~  213 (214)
T 2fh5_B          141 EKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSA-DIQDLEKWLAKI  213 (214)
T ss_dssp             HHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CC-BCHHHHHHHHHH
T ss_pred             HHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCcccccc-ChHHHHHHHHHh
Confidence                                        001111111 11  567999999999      9 999999999875

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.68  E-value=6.3e-17  Score=126.70  Aligned_cols=106  Identities=15%  Similarity=0.167  Sum_probs=86.3

Q ss_pred             CCCCCC-------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCC--Ccc----
Q psy2792           2 TIGLTE-------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEH--LRQ----   67 (173)
Q Consensus         2 TaG~e~-------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~--~~~----   67 (173)
                      |||+++       .++..|++++|++|+|||++++++|+++..|...+..... .+++|++|||||+|+.+  .+.    
T Consensus        59 t~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~  138 (307)
T 3r7w_A           59 CGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQ  138 (307)
T ss_dssp             ECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHH
T ss_pred             CCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHH
Confidence            788875       3778899999999999999999999999777554443210 26799999999999976  444    


Q ss_pred             CCHHHHHHHhhhcC---CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          68 VDESLGRSTAVKYN---CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        68 v~~~~~~~~~~~~~---~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +..+++..++..+|   +.|++|||++ . ++.++|..++..+..
T Consensus       139 v~~~~~~~~~~~~g~~~~~~~~tSa~~-~-~i~e~~~~iv~~li~  181 (307)
T 3r7w_A          139 IMMKNLSETSSEFGFPNLIGFPTSIWD-E-SLYKAWSQIVCSLIP  181 (307)
T ss_dssp             HHHHHHHHHHHTTTCCSCEEEECCTTS-S-HHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHHcCCCCeEEEEeeecC-C-hHHHHHHHHHHHHcC
Confidence            55677888999887   7899999999 7 899999999887654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.65  E-value=6.6e-17  Score=127.92  Aligned_cols=107  Identities=14%  Similarity=0.158  Sum_probs=85.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLI----------DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR---   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~----------~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~---   66 (173)
                      ||||+++  ++.+||++++++|||||++          +..+|++...|+..+.......++|+||||||+||..++   
T Consensus       168 taGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~NK~DL~~eki~~  247 (340)
T 4fid_A          168 VGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLNKMDLFEEKLTK  247 (340)
T ss_dssp             CCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEECHHHHHHHHHH
T ss_pred             CCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEECchhhhhhcCc
Confidence            8999874  9999999999999999999          678899999999888876534689999999999985321   


Q ss_pred             ------------cCCHHHHHHHhhh---------------------------cCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          67 ------------QVDESLGRSTAVK---------------------------YNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        67 ------------~v~~~~~~~~~~~---------------------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                                  ....+++..++..                           ..+.+++|||++.. ||+.+|..+.+.|
T Consensus       248 ~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~-nv~~vF~~v~~~I  326 (340)
T 4fid_A          248 VPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGS-NIKRVFMLAVDVI  326 (340)
T ss_dssp             SCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHH-HHHHHHHHHHHHH
T ss_pred             chHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcH-HHHHHHHHHHHHH
Confidence                        1235555444322                           13668899999999 9999999999988


Q ss_pred             hc
Q psy2792         108 RG  109 (173)
Q Consensus       108 ~~  109 (173)
                      ++
T Consensus       327 l~  328 (340)
T 4fid_A          327 MK  328 (340)
T ss_dssp             HH
T ss_pred             HH
Confidence            76

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.64  E-value=1.1e-15  Score=119.66  Aligned_cols=111  Identities=15%  Similarity=0.043  Sum_probs=91.6

Q ss_pred             CCCCCC------------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC
Q psy2792           2 TIGLTE------------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD   69 (173)
Q Consensus         2 TaG~e~------------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~   69 (173)
                      |+|+.+            .....++.++|++|+|||+++..++++...|+..+..    .++|+++|+||+|+.......
T Consensus        66 TPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~----~~~pvilV~NK~Dl~~~~~~~  141 (308)
T 3iev_A           66 TPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKP----LNKPVIVVINKIDKIGPAKNV  141 (308)
T ss_dssp             CCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGG----GCCCEEEEEECGGGSSSGGGG
T ss_pred             CcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHh----cCCCEEEEEECccCCCCHHHH
Confidence            788854            1456789999999999999998888888888887776    358999999999997445555


Q ss_pred             HHHHHHHhhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCccc
Q psy2792          70 ESLGRSTAVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHK  117 (173)
Q Consensus        70 ~~~~~~~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~~  117 (173)
                      .+....+...++  ..++++||++|. ||+++|++|.+.+.+.+..+++.
T Consensus       142 ~~~~~~l~~~~~~~~~i~~vSA~~g~-gv~~L~~~l~~~l~~~~~~~~~~  190 (308)
T 3iev_A          142 LPLIDEIHKKHPELTEIVPISALKGA-NLDELVKTILKYLPEGEPLFPED  190 (308)
T ss_dssp             HHHHHHHHHHCTTCCCEEECBTTTTB-SHHHHHHHHHHHSCBCCCSSCTT
T ss_pred             HHHHHHHHHhccCCCeEEEEeCCCCC-CHHHHHHHHHHhCccCCCCCCcc
Confidence            666777777765  779999999999 99999999999998877766543

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.63  E-value=1.3e-16  Score=114.57  Aligned_cols=98  Identities=15%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             CCCCCCc--------c--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--------T--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--------~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.        +  ...|++++|++|+|||+++..+|+. ..|+..+.+.. ..++|+++|+||+|+.+..     
T Consensus        59 t~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~~-----  131 (172)
T 2gj8_A           59 TAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARL-PAKLPITVVRNKADITGET-----  131 (172)
T ss_dssp             CCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHS-CTTCCEEEEEECHHHHCCC-----
T ss_pred             CCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhc-ccCCCEEEEEECccCCcch-----
Confidence            8898762        1  2247899999999999999888763 56887777654 3579999999999985321     


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                        ..++...++.+++|||++|. ||+++|++|.+.+..
T Consensus       132 --~~~~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          132 --LGMSEVNGHALIRLSARTGE-GVDVLRNHLKQSMGF  166 (172)
T ss_dssp             --CEEEEETTEEEEECCTTTCT-THHHHHHHHHHHC--
T ss_pred             --hhhhhccCCceEEEeCCCCC-CHHHHHHHHHHHhhh
Confidence              12233456789999999999 999999999987643

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.63  E-value=6.6e-16  Score=129.17  Aligned_cols=105  Identities=10%  Similarity=0.101  Sum_probs=87.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||+++.  +...|++++|++|+|||+++.   +.+..|+.++....  .++|+|||+||+|+...+.+..+++..++..
T Consensus       105 t~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l~~~~--~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~  179 (535)
T 3dpu_A          105 FGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHIEKYG--GKSPVIVVMNKIDENPSYNIEQKKINERFPA  179 (535)
T ss_dssp             CCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHHHHHS--SSCCEEEEECCTTTCTTCCCCHHHHHHHCGG
T ss_pred             CCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHHHHhC--CCCCEEEEEECCCcccccccCHHHHHHHHHh
Confidence            7999874  788899999999999999764   55678999998876  5799999999999988788888889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      .++.+++|||++|. ||+++|..|++.+.+...
T Consensus       180 ~~~~~~~vSA~~g~-gi~eL~~~l~~~~~~~~~  211 (535)
T 3dpu_A          180 IENRFHRISCKNGD-GVESIAKSLKSAVLHPDS  211 (535)
T ss_dssp             GTTCEEECCC------CTTHHHHHHHHHTCTTS
T ss_pred             cCCceEEEecCccc-CHHHHHHHHHHHHhcccc
Confidence            99999999999999 999999999998877543

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.62  E-value=1.8e-16  Score=114.48  Aligned_cols=97  Identities=14%  Similarity=0.101  Sum_probs=77.0

Q ss_pred             cHhhhccc-CcEEEEEEeCCChhhHHHH-HHHHHH--------HHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           9 TLTAMICW-ADGCIIVYSLIDKESFDYA-VSTLQN--------LQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         9 ~~~~y~~~-ad~iilv~d~~~~~s~~~~-~~~~~~--------i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      +...|+++ ++++++||++.|..+|+.+ ..|...        +.......++|+++|+||+|+...+   .+++..++.
T Consensus        71 ~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~---~~~~~~~~~  147 (190)
T 2cxx_A           71 EIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV---QEVINFLAE  147 (190)
T ss_dssp             HHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH---HHHHHHHHH
T ss_pred             HHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH---HHHHHHHHH
Confidence            66778888 9999899999998899887 667653        2222212579999999999997544   556777888


Q ss_pred             hcCCe-------EEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCT-------FHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~-------~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++.       +++|||++|. ||+++|++|++.+.+
T Consensus       148 ~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~l~~~~~~  184 (190)
T 2cxx_A          148 KFEVPLSEIDKVFIPISAKFGD-NIERLKNRIFEVIRE  184 (190)
T ss_dssp             HHTCCGGGHHHHEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             HhhhhhhccCCcEEEEecCCCC-CHHHHHHHHHHhcch
Confidence            77764       7999999999 999999999998876

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.61  E-value=8.7e-15  Score=104.52  Aligned_cols=96  Identities=17%  Similarity=0.180  Sum_probs=71.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |+|+++.  ++..++.++|++|+|||+++   .++++.+    ..+..    .++|+++|+||+|+.+.   ..++....
T Consensus        62 t~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l----~~~~~----~~~p~ilv~nK~Dl~~~---~~~~~~~~  130 (178)
T 2lkc_A           62 TPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAI----NHAKA----ANVPIIVAINKMDKPEA---NPDRVMQE  130 (178)
T ss_dssp             CCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHH----HHHGG----GSCCEEEEEETTTSSCS---CHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH----HHHHh----CCCCEEEEEECccCCcC---CHHHHHHH
Confidence            8999884  77889999999999999998   4444332    22222    46899999999999653   22333322


Q ss_pred             hhh-------cC--CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 AVK-------YN--CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 ~~~-------~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...       ++  +.+++|||++|. ||+++|++|++.+..
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~Sa~~~~-gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          131 LMEYNLVPEEWGGDTIFCKLSAKTKE-GLDHLLEMILLVSEM  171 (178)
T ss_dssp             HTTTTCCBTTTTSSEEEEECCSSSSH-HHHHHHHHHHHHHHH
T ss_pred             HHhcCcChhHcCCcccEEEEecCCCC-CHHHHHHHHHHhhhh
Confidence            222       22  579999999999 999999999988765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.61  E-value=8.4e-16  Score=111.00  Aligned_cols=101  Identities=12%  Similarity=0.039  Sum_probs=81.4

Q ss_pred             CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.        +...|+.  ++|++++|+|.++   ++....|+..+..    .++|+++|+||+|+...+.+. .
T Consensus        61 t~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~----~~~piilv~nK~Dl~~~~~~~-~  132 (188)
T 2wjg_A           61 LPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME----MGANLLLALNKMDLAKSLGIE-I  132 (188)
T ss_dssp             CCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT----TTCCEEEEEECHHHHHHTTCC-C
T ss_pred             CCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh----cCCCEEEEEEhhhccccccch-H
Confidence            7898863        4667776  4999999999875   5666778887765    468999999999987555554 3


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ++..++..+++.++++||+++. ||+++|++|++.+.+..
T Consensus       133 ~~~~~~~~~~~~~~~~Sa~~~~-~v~~l~~~i~~~~~~~~  171 (188)
T 2wjg_A          133 DVDKLEKILGVKVVPLSAAKKM-GIEELKKAISIAVKDKK  171 (188)
T ss_dssp             CHHHHHHHHTSCEEECBGGGTB-SHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHhCCCeEEEEecCCC-CHHHHHHHHHHHHHhcc
Confidence            5677788888999999999999 99999999999887643

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.61  E-value=6.4e-16  Score=120.79  Aligned_cols=96  Identities=19%  Similarity=0.040  Sum_probs=77.9

Q ss_pred             CCCC--ccHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHHHhhh
Q psy2792           4 GLTE--GTLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRSTAVK   79 (173)
Q Consensus         4 G~e~--~~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~~~   79 (173)
                      ++++  .+.+.|++++|++|+|||+++++ +++.+..|+..+..    .++|++||+||+||.+..++. .++...++..
T Consensus        65 i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~----~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~  140 (302)
T 2yv5_A           65 VEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY----FKVEPVIVFNKIDLLNEEEKKELERWISIYRD  140 (302)
T ss_dssp             ECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHH
T ss_pred             eCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh----CCCCEEEEEEcccCCCccccHHHHHHHHHHHH
Confidence            3555  37788999999999999999987 89999999987765    469999999999997543222 3445566667


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHH
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLL  104 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~  104 (173)
                      .++.++++||++|. |++++|..+.
T Consensus       141 ~g~~~~~~SA~~g~-gi~~L~~~l~  164 (302)
T 2yv5_A          141 AGYDVLKVSAKTGE-GIDELVDYLE  164 (302)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHTT
T ss_pred             CCCeEEEEECCCCC-CHHHHHhhcc
Confidence            78999999999999 9999997654

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.58  E-value=1.8e-15  Score=106.32  Aligned_cols=95  Identities=14%  Similarity=0.063  Sum_probs=70.1

Q ss_pred             CCCCCCc---------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH
Q psy2792           2 TIGLTEG---------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL   72 (173)
Q Consensus         2 TaG~e~~---------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~   72 (173)
                      |+|+++.         ....+++++|++|+|||+++..+..  ..|+..+...   .++|+++|+||+|+.+..    ++
T Consensus        56 t~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~--~~~~~~~~~~---~~~p~ilv~nK~Dl~~~~----~~  126 (161)
T 2dyk_A           56 TGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQA--DYEVAEYLRR---KGKPVILVATKVDDPKHE----LY  126 (161)
T ss_dssp             CGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHH--HHHHHHHHHH---HTCCEEEEEECCCSGGGG----GG
T ss_pred             CCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHh--HHHHHHHHHh---cCCCEEEEEECcccccch----Hh
Confidence            7888761         4567899999999999999864432  2333333332   358999999999997532    33


Q ss_pred             HHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          73 GRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        73 ~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      +..++ ..++ .++++||++|. |++++|++|++.+
T Consensus       127 ~~~~~-~~~~~~~~~~Sa~~~~-gv~~l~~~l~~~l  160 (161)
T 2dyk_A          127 LGPLY-GLGFGDPIPTSSEHAR-GLEELLEAIWERL  160 (161)
T ss_dssp             CGGGG-GGSSCSCEECBTTTTB-SHHHHHHHHHHHC
T ss_pred             HHHHH-hCCCCCeEEEecccCC-ChHHHHHHHHHhC
Confidence            44455 5676 79999999999 9999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.57  E-value=4e-15  Score=108.00  Aligned_cols=94  Identities=15%  Similarity=0.122  Sum_probs=69.8

Q ss_pred             cHhhhcccC---cEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHH-HhhhcCC
Q psy2792           9 TLTAMICWA---DGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRS-TAVKYNC   82 (173)
Q Consensus         9 ~~~~y~~~a---d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~-~~~~~~~   82 (173)
                      +...|++++   |++|+|||+++..++.... ++..+..    .++|+++|+||+|+.+.+++..  +++.. ++...++
T Consensus        95 ~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~  169 (195)
T 1svi_A           95 MIETYITTREELKAVVQIVDLRHAPSNDDVQ-MYEFLKY----YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPED  169 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-HHHHHHH----TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTS
T ss_pred             HHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-HHHHHHH----cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCC
Confidence            577888888   9999999999987776543 2222222    4689999999999976554432  23333 3334568


Q ss_pred             eEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          83 TFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        83 ~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      .++++||++|. ||+++|++|.+.+.
T Consensus       170 ~~~~~Sa~~~~-gv~~l~~~l~~~l~  194 (195)
T 1svi_A          170 ELILFSSETKK-GKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEEECCTTTCT-THHHHHHHHHHHHT
T ss_pred             ceEEEEccCCC-CHHHHHHHHHHHhc
Confidence            89999999999 99999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.52  E-value=1.7e-14  Score=104.36  Aligned_cols=93  Identities=14%  Similarity=0.076  Sum_probs=68.4

Q ss_pred             cHhhhcccC---cEEEEEEeCCChhh--HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--cCCHHHHHHHhhhcC
Q psy2792           9 TLTAMICWA---DGCIIVYSLIDKES--FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--QVDESLGRSTAVKYN   81 (173)
Q Consensus         9 ~~~~y~~~a---d~iilv~d~~~~~s--~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~~~~~~~~~~~~~   81 (173)
                      +...|++++   |++++|+|.++..+  +..+..|+..       .++|+++|+||+|+.+..  ....+++..++...+
T Consensus        94 ~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~  166 (195)
T 3pqc_A           94 LVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKS-------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYG  166 (195)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHH-------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSC
T ss_pred             HHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHH-------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcC
Confidence            667788877   99999999987533  3333344432       258999999999996432  233345556666544


Q ss_pred             -CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          82 -CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        82 -~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                       +.+++|||++|. ||+++|++|.+.+.+
T Consensus       167 ~~~~~~~Sa~~~~-gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          167 EYTIIPTSSVTGE-GISELLDLISTLLKE  194 (195)
T ss_dssp             CSCEEECCTTTCT-THHHHHHHHHHHHC-
T ss_pred             CCceEEEecCCCC-CHHHHHHHHHHHhhc
Confidence             789999999999 999999999988754

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.50  E-value=2.5e-14  Score=110.24  Aligned_cols=98  Identities=12%  Similarity=0.077  Sum_probs=78.2

Q ss_pred             CCCCCCc--------cHhhhcc--cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--------TLTAMIC--WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--------~~~~y~~--~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||++..        +...|+.  ++|++|+|||+++.+++   ..|...+.+    .++|+++|+||+|+...+.+. .
T Consensus        56 tpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~~---~~~~~~l~~----~~~p~ilv~NK~Dl~~~~~~~-~  127 (272)
T 3b1v_A           56 LPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLERN---LYLTTQLIE----TGIPVTIALNMIDVLDGQGKK-I  127 (272)
T ss_dssp             CCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHHH---HHHHHHHHH----TCSCEEEEEECHHHHHHTTCC-C
T ss_pred             CCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHhH---HHHHHHHHh----cCCCEEEEEEChhhCCcCCcH-H
Confidence            7898762        5677886  59999999999986544   456666665    368999999999986544444 3


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ++..++..+++++++|||++|. ||+++|++|++.+.
T Consensus       128 ~~~~l~~~lg~~vi~~SA~~g~-gi~el~~~i~~~~~  163 (272)
T 3b1v_A          128 NVDKLSYHLGVPVVATSALKQT-GVDQVVKKAAHTTT  163 (272)
T ss_dssp             CHHHHHHHHTSCEEECBTTTTB-SHHHHHHHHHHSCT
T ss_pred             HHHHHHHHcCCCEEEEEccCCC-CHHHHHHHHHHHHh
Confidence            4567788889999999999999 99999999988654

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.50  E-value=1.6e-14  Score=114.57  Aligned_cols=99  Identities=12%  Similarity=0.170  Sum_probs=80.4

Q ss_pred             cHhhhccc---CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC
Q psy2792           9 TLTAMICW---ADGCIIVYSLID---KESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN   81 (173)
Q Consensus         9 ~~~~y~~~---ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~   81 (173)
                      +...|++.   +|++|+|||+++   .++++++..|+.++..+.. ..++|++||+||+|+....    +....++..+.
T Consensus       226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~~----e~~~~l~~~l~  301 (342)
T 1lnz_A          226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLT  301 (342)
T ss_dssp             THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCC
T ss_pred             hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCCH----HHHHHHHHHhh
Confidence            66677665   999999999998   7889999999999988642 2479999999999986422    34555666665


Q ss_pred             --CeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          82 --CTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        82 --~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                        +.++++||+++. ||+++|.+|.+.+.+.+.
T Consensus       302 ~~~~v~~iSA~tg~-gi~eL~~~l~~~l~~~~~  333 (342)
T 1lnz_A          302 DDYPVFPISAVTRE-GLRELLFEVANQLENTPE  333 (342)
T ss_dssp             SCCCBCCCSSCCSS-TTHHHHHHHHHHHTSCCC
T ss_pred             cCCCEEEEECCCCc-CHHHHHHHHHHHHhhCcc
Confidence              679999999999 999999999998876443

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.50  E-value=3.1e-14  Score=108.83  Aligned_cols=99  Identities=11%  Similarity=0.014  Sum_probs=78.8

Q ss_pred             CCCCCCc--------cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--------TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--------~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||++..        +...|+  .++|++|+|||+++.++.   ..|...+.+    .++|+++|+||+|+...+.+.. 
T Consensus        59 tpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~----~~~pvilv~NK~Dl~~~~~i~~-  130 (258)
T 3a1s_A           59 LPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE----MEKKVILAMTAIDEAKKTGMKI-  130 (258)
T ss_dssp             CCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT----TTCCEEEEEECHHHHHHTTCCB-
T ss_pred             CCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh----cCCCEEEEEECcCCCCccchHH-
Confidence            7898763        346777  589999999999986554   346666655    3599999999999875555542 


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +...++..++++++++||++|. ||+++|++|.+.+..
T Consensus       131 ~~~~l~~~lg~~vi~~SA~~g~-gi~el~~~i~~~~~~  167 (258)
T 3a1s_A          131 DRYELQKHLGIPVVFTSSVTGE-GLEELKEKIVEYAQK  167 (258)
T ss_dssp             CHHHHHHHHCSCEEECCTTTCT-THHHHHHHHHHHHHS
T ss_pred             HHHHHHHHcCCCEEEEEeeCCc-CHHHHHHHHHHHhhc
Confidence            3677888889999999999999 999999999987753

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.49  E-value=1.3e-13  Score=109.82  Aligned_cols=93  Identities=10%  Similarity=0.174  Sum_probs=76.7

Q ss_pred             hhcccCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792          12 AMICWADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV   89 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa   89 (173)
                      .+...+|++|+|+|+++..  +++....|+..+....  .+.|+++|+||+|+.....+  +++..++...++.+++|||
T Consensus       242 ~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~--~~~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA  317 (357)
T 2e87_A          242 ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF--KDLPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISA  317 (357)
T ss_dssp             GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT--TTSCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBT
T ss_pred             HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc--CCCCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeC
Confidence            3556799999999999877  7888888999888765  37999999999999754332  3455666677889999999


Q ss_pred             cCCcccHHHHHHHHHHHHhc
Q psy2792          90 ADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        90 k~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++|. ||+++|++|.+.+..
T Consensus       318 ~~g~-gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          318 LKGT-GIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TTTB-THHHHHHHHHHHHHH
T ss_pred             CCCc-CHHHHHHHHHHHHHH
Confidence            9999 999999999988754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.49  E-value=9.5e-15  Score=108.06  Aligned_cols=92  Identities=17%  Similarity=0.159  Sum_probs=69.0

Q ss_pred             CCCCCCc--cHhhhccc----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh---CCCCCcEEEEEeCCCCCCCccCC--
Q psy2792           2 TIGLTEG--TLTAMICW----ADGCIIVYSLI-DKESFDYAVSTLQNLQRHR---AVNNVPVMLLANKLDLEHLRQVD--   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~----ad~iilv~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~v~--   69 (173)
                      |+|+++.  ++..|+++    +|++|+|||++ ++++|..+..|+.++....   ...++|+++|+||+|+...+.+.  
T Consensus        62 t~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~  141 (218)
T 1nrj_B           62 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKI  141 (218)
T ss_dssp             CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHH
T ss_pred             CCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHH
Confidence            8999874  77788887    99999999999 8899999999998887653   13679999999999998765543  


Q ss_pred             ----HHHHHHHhhhcCCeEEEEcccCCc
Q psy2792          70 ----ESLGRSTAVKYNCTFHEVSVADNS   93 (173)
Q Consensus        70 ----~~~~~~~~~~~~~~~~e~Sak~g~   93 (173)
                          .+++..++...++.|+++||++|.
T Consensus       142 ~~~l~~~~~~~~~~~~~~~~~~Sa~~~~  169 (218)
T 1nrj_B          142 KDALESEIQKVIERRKKSLNEVERKINE  169 (218)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccc
Confidence                445666777777889999999987

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.47  E-value=9.2e-14  Score=108.49  Aligned_cols=107  Identities=18%  Similarity=0.155  Sum_probs=76.6

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHH-HHHHhhhCCCCCcEEEEEeCCCCCCCcc-CC
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTL-QNLQRHRAVNNVPVMLLANKLDLEHLRQ-VD   69 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~piilv~NK~Dl~~~~~-v~   69 (173)
                      |||+.+.          ....|++++|++|+|||+++..+..  ..|+ ..+....  .++|+++|+||+|+..... + 
T Consensus        62 TpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~--~~~i~~~l~~~~--~~~p~ilV~NK~Dl~~~~~~~-  136 (301)
T 1wf3_A           62 TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPE--DELVARALKPLV--GKVPILLVGNKLDAAKYPEEA-  136 (301)
T ss_dssp             CCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHH--HHHHHHHHGGGT--TTSCEEEEEECGGGCSSHHHH-
T ss_pred             CccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChH--HHHHHHHHHhhc--CCCCEEEEEECcccCCchHHH-
Confidence            8998761          4567899999999999999864443  4555 4555442  4699999999999865332 1 


Q ss_pred             HHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcc
Q psy2792          70 ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIH  116 (173)
Q Consensus        70 ~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~  116 (173)
                      .+....+  .....++++||++|. |++++|+.|...+.+.+..+++
T Consensus       137 ~~~~~~~--~~~~~~~~iSA~~g~-gv~~l~~~l~~~l~~~~~~y~~  180 (301)
T 1wf3_A          137 MKAYHEL--LPEAEPRMLSALDER-QVAELKADLLALMPEGPFFYPE  180 (301)
T ss_dssp             HHHHHHT--STTSEEEECCTTCHH-HHHHHHHHHHTTCCBCCCSSCT
T ss_pred             HHHHHHh--cCcCcEEEEeCCCCC-CHHHHHHHHHHhcccCCCCCCc
Confidence            1222222  112568999999999 9999999999888776655543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.46  E-value=1e-13  Score=113.85  Aligned_cols=92  Identities=10%  Similarity=-0.004  Sum_probs=72.4

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc-----CCeEEE
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY-----NCTFHE   86 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~e   86 (173)
                      .|++.||++|+|+|+++..+ +....|...+..    .++|+|||+||+|+.+.+.+..+++.+.+...     ++++++
T Consensus       273 ~~~~~ad~~llviD~~~~~~-~~~~~~~~~~~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  347 (456)
T 4dcu_A          273 KAIDRSEVVAVVLDGEEGII-EQDKRIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  347 (456)
T ss_dssp             HHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHhhCCEEEEEEeCCCCcC-HHHHHHHHHHHH----cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            48899999999999987533 233455555554    45899999999999876766666666655543     478999


Q ss_pred             EcccCCcccHHHHHHHHHHHHhc
Q psy2792          87 VSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      |||++|. ||+++|+.+.+.+..
T Consensus       348 ~SA~~g~-gv~~l~~~i~~~~~~  369 (456)
T 4dcu_A          348 MSALTKK-RIHTLMPAIIKASEN  369 (456)
T ss_dssp             CCTTTCT-TGGGHHHHHHHHHHH
T ss_pred             EcCCCCc-CHHHHHHHHHHHHHH
Confidence            9999999 999999999987765

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.45  E-value=4.5e-14  Score=114.87  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=80.2

Q ss_pred             CCCCCCc--c-------HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH
Q psy2792           2 TIGLTEG--T-------LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL   72 (173)
Q Consensus         2 TaG~e~~--~-------~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~   72 (173)
                      |||++++  +       +..++.++|++|+|||++..   +....|+..+.+.    ++|+++|+||+|+...+..  +.
T Consensus        90 TpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~----~~piIvV~NK~Dl~~~~~~--~~  160 (423)
T 3qq5_A           90 TPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM----EIPFVVVVNKIDVLGEKAE--EL  160 (423)
T ss_dssp             CSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT----TCCEEEECCCCTTTTCCCT--HH
T ss_pred             CcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc----CCCEEEEEeCcCCCCccHH--HH
Confidence            8999873  2       46689999999999999433   3336677777764    5899999999999865544  56


Q ss_pred             HHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          73 GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        73 ~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      ...++..+++.++++||++|. |++++|++|.+.+.+.
T Consensus       161 ~~~l~~~~g~~v~~vSAktg~-gI~eL~~~L~~~l~~~  197 (423)
T 3qq5_A          161 KGLYESRYEAKVLLVSALQKK-GFDDIGKTISEILPGD  197 (423)
T ss_dssp             HHHSSCCTTCCCCCCSSCCTT-STTTHHHHHHHHSCCC
T ss_pred             HHHHHHHcCCCEEEEECCCCC-CHHHHHHHHHHhhhhh
Confidence            677777888999999999999 9999999999988654

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.44  E-value=3.8e-14  Score=108.28  Aligned_cols=96  Identities=19%  Similarity=0.126  Sum_probs=74.0

Q ss_pred             CCCCCCc------------cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc
Q psy2792           2 TIGLTEG------------TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ   67 (173)
Q Consensus         2 TaG~e~~------------~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~   67 (173)
                      |||++..            +...|+  .++|++|+|+|+++.+++..+..|   +.+    .++|+++|+||+|+...+.
T Consensus        55 tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l~~----~~~pvilv~NK~Dl~~~~~  127 (256)
T 3iby_A           55 LPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---LFE----LGKPVVVALNMMDIAEHRG  127 (256)
T ss_dssp             CCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---HTT----SCSCEEEEEECHHHHHHTT
T ss_pred             CCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---HHH----cCCCEEEEEEChhcCCcCC
Confidence            7888652            567788  899999999999997666544333   333    3689999999999865443


Q ss_pred             CCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          68 VDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        68 v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      +.. ....++..++++++++||++|. |++++|++|.+.
T Consensus       128 ~~~-~~~~l~~~lg~~vi~~SA~~g~-gi~el~~~i~~~  164 (256)
T 3iby_A          128 ISI-DTEKLESLLGCSVIPIQAHKNI-GIPALQQSLLHC  164 (256)
T ss_dssp             CEE-CHHHHHHHHCSCEEECBGGGTB-SHHHHHHHHHTC
T ss_pred             cHH-HHHHHHHHcCCCEEEEECCCCC-CHHHHHHHHHhh
Confidence            322 2345677789999999999999 999999999876

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.43  E-value=1.7e-13  Score=113.05  Aligned_cols=100  Identities=20%  Similarity=0.108  Sum_probs=67.8

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.          .+..|+.++|++|+|||++++.+++++..+...+...   .++|+++|+||+|+.....+   
T Consensus       288 T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l---~~~piIvV~NK~Dl~~~~~~---  361 (476)
T 3gee_A          288 TAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH---PAAKFLTVANKLDRAANADA---  361 (476)
T ss_dssp             --------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC---TTSEEEEEEECTTSCTTTHH---
T ss_pred             CCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc---CCCCEEEEEECcCCCCccch---
Confidence            8998762          2355899999999999999988876443333333322   36899999999999765433   


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ....+.......+++|||++|. ||+++|++|.+.+.
T Consensus       362 ~~~~l~~~~~~~~i~vSAktg~-GI~eL~~~i~~~~~  397 (476)
T 3gee_A          362 LIRAIADGTGTEVIGISALNGD-GIDTLKQHMGDLVK  397 (476)
T ss_dssp             HHHHHHHHHTSCEEECBTTTTB-SHHHHHHHHTHHHH
T ss_pred             hHHHHHhcCCCceEEEEECCCC-CHHHHHHHHHHHHh
Confidence            2233443323679999999999 99999999999887

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.42  E-value=7e-14  Score=107.71  Aligned_cols=100  Identities=15%  Similarity=0.049  Sum_probs=74.2

Q ss_pred             CCCCCCc------------cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc
Q psy2792           2 TIGLTEG------------TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ   67 (173)
Q Consensus         2 TaG~e~~------------~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~   67 (173)
                      |||+++.            +...|+  +++|++|+|+|.++.+++..   |...+.+.    ++|+++|+||+|+.+.+.
T Consensus        57 tpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~----~~p~ivv~NK~Dl~~~~~  129 (274)
T 3i8s_A           57 LPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLLEL----GIPCIVALNMLDIAEKQN  129 (274)
T ss_dssp             CCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH----TCCEEEEEECHHHHHHTT
T ss_pred             CcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc----CCCEEEEEECccchhhhh
Confidence            7888762            244454  79999999999998665543   44444443    589999999999864433


Q ss_pred             CCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          68 VDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        68 v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +. .....++..++++++++||++|. |++++|++|.+.+...
T Consensus       130 ~~-~~~~~l~~~lg~~~i~~SA~~g~-gi~el~~~i~~~~~~~  170 (274)
T 3i8s_A          130 IR-IEIDALSARLGCPVIPLVSTRGR-GIEALKLAIDRYKANE  170 (274)
T ss_dssp             EE-ECHHHHHHHHTSCEEECCCGGGH-HHHHHHHHHHTCCCCC
T ss_pred             HH-HHHHHHHHhcCCCEEEEEcCCCC-CHHHHHHHHHHHHhcC
Confidence            22 12456677789999999999999 9999999998766543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.42  E-value=1.5e-13  Score=112.29  Aligned_cols=92  Identities=10%  Similarity=-0.034  Sum_probs=72.4

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-----HhhhcCCeEEE
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-----TAVKYNCTFHE   86 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~e   86 (173)
                      .+++++|++|+|||+++..++++. .|+..+..    .++|+|+|+||+|+.+.+.+..++...     ++...++++++
T Consensus       253 ~~~~~ad~~llv~D~~~~~s~~~~-~~~~~~~~----~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  327 (436)
T 2hjg_A          253 KAIDRSEVVAVVLDGEEGIIEQDK-RIAGYAHE----AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILF  327 (436)
T ss_dssp             HHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEE
T ss_pred             HHHHhCCEEEEEEcCCcCCcHHHH-HHHHHHHH----cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEE
Confidence            589999999999999998887775 57776665    468999999999998665554333322     22233678999


Q ss_pred             EcccCCcccHHHHHHHHHHHHhc
Q psy2792          87 VSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +||++|. ||+++|+.+.+.+..
T Consensus       328 ~SA~tg~-~v~~l~~~i~~~~~~  349 (436)
T 2hjg_A          328 MSALTKK-RIHTLMPAIIKASEN  349 (436)
T ss_dssp             CCTTTCT-TGGGHHHHHHHHHHH
T ss_pred             EecccCC-CHHHHHHHHHHHHHH
Confidence            9999999 999999999987765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.42  E-value=5.1e-13  Score=98.91  Aligned_cols=96  Identities=11%  Similarity=0.007  Sum_probs=65.9

Q ss_pred             cHhhhccc---CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhhh----
Q psy2792           9 TLTAMICW---ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAVK----   79 (173)
Q Consensus         9 ~~~~y~~~---ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~----   79 (173)
                      +...|++.   +|++|+|+|.++..+.. ...|+..+..    .++|+++|+||+|+.....+..  +........    
T Consensus       105 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~~~~~l~~----~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~  179 (223)
T 4dhe_A          105 LLSSYLQTRPQLCGMILMMDARRPLTEL-DRRMIEWFAP----TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDA  179 (223)
T ss_dssp             HHHHHHHHCTTEEEEEEEEETTSCCCHH-HHHHHHHHGG----GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHHHHHHHHh----cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhc
Confidence            55677777   78899999998753322 2345555554    4589999999999875333211  111222222    


Q ss_pred             ---cCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 ---YNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                         .++.++++||++|. ||+++|++|.+.+...
T Consensus       180 ~~~~~~~~~~~SA~~g~-gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          180 GYAGKLTVQLFSALKRT-GLDDAHALIESWLRPA  212 (223)
T ss_dssp             TCCSCEEEEEEBTTTTB-SHHHHHHHHHHHHC--
T ss_pred             ccCCCCeEEEeecCCCc-CHHHHHHHHHHhcCcc
Confidence               45789999999999 9999999999988653

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.42  E-value=1.2e-12  Score=108.19  Aligned_cols=96  Identities=15%  Similarity=0.131  Sum_probs=73.6

Q ss_pred             CCCCC-Cc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLT-EG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e-~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~   70 (173)
                      |||++ +.          ....|++++|++|+|||++++.++++...| +.+      .+.|+++|+||+|+...  +..
T Consensus       298 TaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il-~~l------~~~piivV~NK~DL~~~--~~~  368 (482)
T 1xzp_A          298 TAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKIL-ERI------KNKRYLVVINKVDVVEK--INE  368 (482)
T ss_dssp             SSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHH-HHH------TTSSEEEEEEECSSCCC--CCH
T ss_pred             CCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHHHH-HHh------cCCCEEEEEECcccccc--cCH
Confidence            89988 42          245789999999999999998887664332 222      35899999999999642  444


Q ss_pred             HHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          71 SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        71 ~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ++...++. .++.+++|||++|. ||+++|++|.+.+.
T Consensus       369 ~~~~~~~~-~~~~~i~iSAktg~-Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          369 EEIKNKLG-TDRHMVKISALKGE-GLEKLEESIYRETQ  404 (482)
T ss_dssp             HHHHHHHT-CSTTEEEEEGGGTC-CHHHHHHHHHHHTH
T ss_pred             HHHHHHhc-CCCcEEEEECCCCC-CHHHHHHHHHHHHh
Confidence            55554433 34679999999999 99999999998765

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.41  E-value=4.3e-13  Score=98.90  Aligned_cols=102  Identities=8%  Similarity=0.054  Sum_probs=70.2

Q ss_pred             CCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHH---HhhhC-CCCCcEEEEEeCC-CCCCCccCCHHHHHHH
Q psy2792           4 GLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNL---QRHRA-VNNVPVMLLANKL-DLEHLRQVDESLGRST   76 (173)
Q Consensus         4 G~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i---~~~~~-~~~~piilv~NK~-Dl~~~~~v~~~~~~~~   76 (173)
                      ||+.  .+|++||.++|++|||+|.+|.+.++ ....+.++   ..... ..++|++|++||. |++  ...+..+..+.
T Consensus       111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp--~Ams~~EI~e~  187 (227)
T 3l82_B          111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV--KRMPCFYLAHE  187 (227)
T ss_dssp             ------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS--CBCCHHHHHHH
T ss_pred             cHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc--CCCCHHHHHHH
Confidence            6765  59999999999999999999986544 33333232   22211 2578999999995 775  34455554432


Q ss_pred             hh----hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 AV----KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 ~~----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..    ...+.++.|||++|+ |+.+.++||++.+..
T Consensus       188 L~L~~l~R~W~Iq~csA~TGe-GL~EGLdWL~~~l~~  223 (227)
T 3l82_B          188 LHLNLLNHPWLVQDTEAETLT-GFLNGIEWILEEVES  223 (227)
T ss_dssp             TTGGGGCSCEEEEEEETTTCT-THHHHHHHHTTTTTT
T ss_pred             cCCcCCCCCEEEEEeECCCCc-CHHHHHHHHHHHHHh
Confidence            21    234678999999999 999999999976654

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.37  E-value=1.8e-12  Score=104.85  Aligned_cols=104  Identities=13%  Similarity=0.034  Sum_probs=78.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~   77 (173)
                      |||++++  ....++.++|++|+|+|+++..++.+...|+..+....   ..|+++|+||+|+.+.....  .++...+.
T Consensus        82 tPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~---~~~iivviNK~Dl~~~~~~~~~~~~i~~~l  158 (403)
T 3sjy_A           82 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG---VKNLIIVQNKVDVVSKEEALSQYRQIKQFT  158 (403)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT---CCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC---CCCEEEEEECccccchHHHHHHHHHHHHHH
Confidence            7899885  66778999999999999998777777777877666543   35899999999997532211  12222333


Q ss_pred             hhc---CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VKY---NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...   +++++++||++|. ||+++|+.|.+.+..
T Consensus       159 ~~~~~~~~~ii~vSA~~g~-gi~~L~~~l~~~l~~  192 (403)
T 3sjy_A          159 KGTWAENVPIIPVSALHKI-NIDSLIEGIEEYIKT  192 (403)
T ss_dssp             TTSTTTTCCEEECBTTTTB-SHHHHHHHHHHHSCC
T ss_pred             HhhCCCCCEEEEEECCCCc-ChHHHHHHHHHhCCC
Confidence            222   4679999999999 999999999987754

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.36  E-value=1.1e-12  Score=100.60  Aligned_cols=101  Identities=11%  Similarity=0.014  Sum_probs=77.4

Q ss_pred             CCCCCCc--------cHhhhc--ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG--------TLTAMI--CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~--------~~~~y~--~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |+|+++.        +...|+  .++|++|+|+|.++.+   ....|...+...   ..+|+++|+||+|+.+.+.+...
T Consensus        57 tpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~  130 (271)
T 3k53_A           57 LPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM---EVKNIILVLNKFDLLKKKGAKID  130 (271)
T ss_dssp             CCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT---TCCSEEEEEECHHHHHHHTCCCC
T ss_pred             CCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc---CCCCEEEEEEChhcCcccccHHH
Confidence            7898762        566777  6899999999998853   334455555543   23899999999998654433322


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                       ...++..++++++++||++|. |++++|+.+...+...
T Consensus       131 -~~~l~~~lg~~~~~~Sa~~g~-gi~~l~~~i~~~~~~~  167 (271)
T 3k53_A          131 -IKKMRKELGVPVIPTNAKKGE-GVEELKRMIALMAEGK  167 (271)
T ss_dssp             -HHHHHHHHSSCEEECBGGGTB-THHHHHHHHHHHHHTC
T ss_pred             -HHHHHHHcCCcEEEEEeCCCC-CHHHHHHHHHHHHhcc
Confidence             566778889999999999999 9999999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.35  E-value=2.1e-12  Score=105.54  Aligned_cols=99  Identities=18%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             CCCCCCc-----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLTEG-----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e~~-----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~   70 (173)
                      |||++..           .+..|+++||++|+|||+++..++.+  .|+..+.+.   .++|++||+||+|+...  . .
T Consensus        56 T~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~---~~~p~ilv~NK~D~~~~--~-~  127 (439)
T 1mky_A           56 TCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK---STVDTILVANKAENLRE--F-E  127 (439)
T ss_dssp             CTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH---HTCCEEEEEESCCSHHH--H-H
T ss_pred             CCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH---cCCCEEEEEeCCCCccc--c-H
Confidence            8998741           45678999999999999987644432  233333322   25899999999998532  1 1


Q ss_pred             HHH-HHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          71 SLG-RSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        71 ~~~-~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      .+. .+++ .+++ .++++||++|. |++++|++|+..+.+.
T Consensus       128 ~~~~~~~~-~lg~~~~~~iSA~~g~-gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          128 REVKPELY-SLGFGEPIPVSAEHNI-NLDTMLETIIKKLEEK  167 (439)
T ss_dssp             HHTHHHHG-GGSSCSCEECBTTTTB-SHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHH-hcCCCCEEEEeccCCC-CHHHHHHHHHHhcccc
Confidence            222 3444 4566 68999999999 9999999999988753

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.35  E-value=3.1e-12  Score=108.08  Aligned_cols=101  Identities=12%  Similarity=0.137  Sum_probs=80.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ....+++.+|++|+|||+++..+++....|...+.     .++|+|+|+||+|+....  ..+...++...
T Consensus        78 TPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~-----~~ipiIvViNKiDl~~a~--~~~v~~ei~~~  150 (599)
T 3cb4_D           78 TPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME-----MDLEVVPVLNKIDLPAAD--PERVAEEIEDI  150 (599)
T ss_dssp             CCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH-----CCCCEEEeeeccCccccc--HHHHHHHHHHH
Confidence            8999885  67788999999999999998777777777765442     358999999999997533  23334556666


Q ss_pred             cCCe---EEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNCT---FHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~~---~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +++.   ++++||++|. ||+++|++|++.+...
T Consensus       151 lg~~~~~vi~vSAktg~-GI~~Ll~~I~~~lp~p  183 (599)
T 3cb4_D          151 VGIDATDAVRCSAKTGV-GVQDVLERLVRDIPPP  183 (599)
T ss_dssp             TCCCCTTCEEECTTTCT-THHHHHHHHHHHSCCC
T ss_pred             hCCCcceEEEeecccCC-CchhHHHHHhhcCCCc
Confidence            6653   8999999999 9999999999988653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.34  E-value=4.7e-12  Score=106.96  Aligned_cols=101  Identities=9%  Similarity=0.130  Sum_probs=80.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ....+++.+|++|+|||+++..+++....|.....     .++|+|+|+||+|+....  ..+...++...
T Consensus        80 TPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~-----~~ipiIvviNKiDl~~a~--~~~v~~el~~~  152 (600)
T 2ywe_A           80 TPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE-----QDLVIIPVINKIDLPSAD--VDRVKKQIEEV  152 (600)
T ss_dssp             CCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH-----TTCEEEEEEECTTSTTCC--HHHHHHHHHHT
T ss_pred             CCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH-----CCCCEEEEEeccCccccC--HHHHHHHHHHh
Confidence            8999885  66778999999999999999877777777765442     468999999999997533  13334556666


Q ss_pred             cCC---eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          80 YNC---TFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        80 ~~~---~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +++   .++++||++|. ||+++|++|++.+...
T Consensus       153 lg~~~~~vi~vSAktg~-GI~~Lle~I~~~lp~p  185 (600)
T 2ywe_A          153 LGLDPEEAILASAKEGI-GIEEILEAIVNRIPPP  185 (600)
T ss_dssp             SCCCGGGCEECBTTTTB-SHHHHHHHHHHHSCCC
T ss_pred             hCCCcccEEEEEeecCC-CchHHHHHHHHhcccc
Confidence            665   38999999999 9999999999988653

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.30  E-value=6.5e-12  Score=97.96  Aligned_cols=108  Identities=17%  Similarity=0.034  Sum_probs=78.3

Q ss_pred             CCCCC-C----------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLT-E----------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e-~----------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~   70 (173)
                      |+|+. .          .....+++.+|++++|+|.++   +.....|+.+...   ..+.|+++|+||+|+...+....
T Consensus        63 TpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~---~~~~~~~i~~~l~---~~~~P~ilvlNK~D~~~~~~~~~  136 (301)
T 1ega_A           63 TPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR---WTPDDEMVLNKLR---EGKAPVILAVNKVDNVQEKADLL  136 (301)
T ss_dssp             SSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC---CCHHHHHHHHHHH---SSSSCEEEEEESTTTCCCHHHHH
T ss_pred             CcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC---CCHHHHHHHHHHH---hcCCCEEEEEECcccCccHHHHH
Confidence            88887 2          234678899999999999977   3334445544333   24689999999999865222223


Q ss_pred             HHHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcc
Q psy2792          71 SLGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIH  116 (173)
Q Consensus        71 ~~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~  116 (173)
                      +....++..+++ .++++||+++. |++++++.|...+.+.+..+++
T Consensus       137 ~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~~~l~~~~~~~~~  182 (301)
T 1ega_A          137 PHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVRKHLPEATHHFPE  182 (301)
T ss_dssp             HHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHHTTCCBCCCSSCT
T ss_pred             HHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHHHhCCcCCCCCCc
Confidence            445556666675 69999999999 9999999999888776655543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.29  E-value=1e-11  Score=95.68  Aligned_cols=103  Identities=8%  Similarity=0.038  Sum_probs=71.9

Q ss_pred             CCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHH---HHHhhh-CCCCCcEEEEEeC-CCCCCCccCCHHHHHH
Q psy2792           3 IGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQ---NLQRHR-AVNNVPVMLLANK-LDLEHLRQVDESLGRS   75 (173)
Q Consensus         3 aG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~---~i~~~~-~~~~~piilv~NK-~Dl~~~~~v~~~~~~~   75 (173)
                      .||+.  .++++||.++|++|||+|.+|.+.++ ....+.   .+.... ...++|++|++|| .|++.  .++..+..+
T Consensus       195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~e  271 (312)
T 3l2o_B          195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAH  271 (312)
T ss_dssp             --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHHH
Confidence            46765  49999999999999999999987654 222222   222111 1257999999996 68853  445555443


Q ss_pred             Hhh----hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 TAV----KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~----~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...    ...+.++.|||++|+ |+.+.++||++.+..
T Consensus       272 ~L~L~~l~r~W~Iq~csA~tGe-GL~EGldWL~~~l~~  308 (312)
T 3l2o_B          272 ELHLNLLNHPWLVQDTEAETLT-GFLNGIEWILEEVES  308 (312)
T ss_dssp             HTTGGGGCSCEEEEEEETTTCT-THHHHHHHHHHHSCC
T ss_pred             HcCCccCCCcEEEEecccCCCc-CHHHHHHHHHHHHHh
Confidence            221    234668899999999 999999999988754

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.29  E-value=4.9e-12  Score=104.02  Aligned_cols=97  Identities=15%  Similarity=0.128  Sum_probs=65.6

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||+++.          ....++.++|++|+|||.+++.++.. ..|+..+      .+.|+++|+||+|+.....+.  
T Consensus       279 T~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l------~~~piivV~NK~Dl~~~~~~~--  349 (462)
T 3geh_A          279 TAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV------KHRPLILVMNKIDLVEKQLIT--  349 (462)
T ss_dssp             --------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH------TTSCEEEEEECTTSSCGGGST--
T ss_pred             CCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc------cCCcEEEEEECCCCCcchhhH--
Confidence            8898652          23457899999999999998766554 4455444      237999999999997655443  


Q ss_pred             HHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          72 LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        72 ~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      ....+.  .+..++++||++|. |++++|++|.+.+...
T Consensus       350 ~~~~~~--~~~~~i~iSAktg~-Gi~eL~~~i~~~~~~~  385 (462)
T 3geh_A          350 SLEYPE--NITQIVHTAAAQKQ-GIDSLETAILEIVQTG  385 (462)
T ss_dssp             TCCCCT--TCCCEEEEBTTTTB-SHHHHHHHHHHHHTTS
T ss_pred             HHHHhc--cCCcEEEEECCCCC-CHHHHHHHHHHHHhcc
Confidence            111111  34679999999999 9999999999988653

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.26  E-value=2.3e-11  Score=98.55  Aligned_cols=100  Identities=14%  Similarity=0.112  Sum_probs=65.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID----KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLG   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~   73 (173)
                      |+|++++  ....++..+|++|+|+|+++    +++++++..|    ...   ...|+++|+||+|+.+....  ..+++
T Consensus        88 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~l---~~~~iivv~NK~Dl~~~~~~~~~~~~i  160 (408)
T 1s0u_A           88 SPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMAL----EIL---GIDKIIIVQNKIDLVDEKQAEENYEQI  160 (408)
T ss_dssp             CSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHH----HHT---TCCCEEEEEECTTSSCTTTTTTHHHHH
T ss_pred             CCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHH----HHc---CCCeEEEEEEccCCCCHHHHHHHHHHH
Confidence            6787664  33344667799999999994    5566655433    221   23589999999999764432  24556


Q ss_pred             HHHhhh---cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          74 RSTAVK---YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        74 ~~~~~~---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++..   .++.++++||++|. ||+++|++|...+..
T Consensus       161 ~~~l~~~~~~~~~~i~vSA~~g~-gi~~L~~~l~~~i~~  198 (408)
T 1s0u_A          161 KEFVKGTIAENAPIIPISAHHEA-NIDVLLKAIQDFIPT  198 (408)
T ss_dssp             HHHHTTSTTTTCCEEEC-------CHHHHHHHHHHHSCC
T ss_pred             HHHHhhcCCCCCeEEEeeCCCCC-CHHHHHHHHHHhCCC
Confidence            666654   35789999999999 999999999987754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.25  E-value=2.1e-11  Score=97.57  Aligned_cols=90  Identities=21%  Similarity=0.155  Sum_probs=70.5

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCC--
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNC--   82 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~--   82 (173)
                      +.++|++.+|++|+|+|++|+.     ..|..++.+..  .+.|+++|+||+||... .+..+....    ++...|+  
T Consensus        62 ~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~--~~~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~  133 (368)
T 3h2y_A           62 ILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV--GNNKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKP  133 (368)
T ss_dssp             HHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS--SSSCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh--CCCcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCc
Confidence            6778899999999999999863     45777777765  47899999999999653 233333333    3566676  


Q ss_pred             -eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          83 -TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        83 -~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                       .++++||++|. |++++++.|.+..
T Consensus       134 ~~v~~iSA~~g~-gi~~L~~~l~~~~  158 (368)
T 3h2y_A          134 EDVFLISAAKGQ-GIAELADAIEYYR  158 (368)
T ss_dssp             SEEEECCTTTCT-THHHHHHHHHHHH
T ss_pred             ccEEEEeCCCCc-CHHHHHhhhhhhc
Confidence             79999999999 9999999997654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.24  E-value=4.8e-12  Score=103.36  Aligned_cols=98  Identities=15%  Similarity=0.052  Sum_probs=65.8

Q ss_pred             CCCCCC----------ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTE----------GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~----------~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |||++.          ..+..|+++||++|+|+|+++..++.+  .|+..+...   .++|++||+||+|+.....    
T Consensus        58 T~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~l~~---~~~pvilv~NK~D~~~~~~----  128 (436)
T 2hjg_A           58 TGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKILYR---TKKPVVLAVNKLDNTEMRA----  128 (436)
T ss_dssp             ---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHHHTT---CCSCEEEEEECCCC---------
T ss_pred             CCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHHHHH---cCCCEEEEEECccCccchh----
Confidence            889862          256778999999999999998766543  344443332   5689999999999864321    


Q ss_pred             HHHHHhhhcCC-eEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          72 LGRSTAVKYNC-TFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        72 ~~~~~~~~~~~-~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      +..++. .+++ .++++||++|. |+.++|+++.+.+.+.
T Consensus       129 ~~~~~~-~lg~~~~~~iSA~~g~-gv~~L~~~i~~~l~~~  166 (436)
T 2hjg_A          129 NIYDFY-SLGFGEPYPISGTHGL-GLGDLLDAVAEHFKNI  166 (436)
T ss_dssp             CCCSSG-GGSSCCCEECBTTTTB-THHHHHHHHHHTGGGC
T ss_pred             hHHHHH-HcCCCCeEEEeCcCCC-ChHHHHHHHHHhcCcc
Confidence            111222 3454 68999999999 9999999999988753

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.22  E-value=1.8e-11  Score=101.16  Aligned_cols=98  Identities=14%  Similarity=0.164  Sum_probs=72.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGR   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~   74 (173)
                      |+|++++  ....++..+|++|+|+|+++   +++++.+.    .+..    .++|+|+|+||+|+.+....  ..++..
T Consensus        80 tPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~----~~~~----~~ip~IvviNK~Dl~~~~~~~~~~~~l~  151 (482)
T 1wb1_A           80 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHML----ILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMK  151 (482)
T ss_dssp             CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHH----HHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHH----HHHH----cCCCEEEEEECCCcccchhHHHHHHHHH
Confidence            7888774  56678999999999999988   55665443    2222    35888999999999742211  123344


Q ss_pred             HHhhhc----CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          75 STAVKY----NCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        75 ~~~~~~----~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      .++...    ++.++++||++|. |+++++++|.+.+.
T Consensus       152 ~~l~~~~~~~~~~ii~vSA~~g~-gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          152 SILQSTHNLKNSSIIPISAKTGF-GVDELKNLIITTLN  188 (482)
T ss_dssp             HHHHHSSSGGGCCEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred             HHHhhhcccccceEEEEECcCCC-CHHHHHHHHHHhhc
Confidence            455444    4679999999999 99999999998775

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.22  E-value=9.9e-11  Score=98.92  Aligned_cols=98  Identities=16%  Similarity=0.091  Sum_probs=70.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-------   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-------   69 (173)
                      |||++++  ++..+++.+|++|+|||+++   +++++.+..    +..    .++|+++|+||+|+.......       
T Consensus        77 TPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~----~~vPiIVViNKiDl~~~~~~~~~~~~~e  148 (594)
T 1g7s_A           77 TPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM----YRTPFVVAANKIDRIHGWRVHEGRPFME  148 (594)
T ss_dssp             CCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH----TTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH----cCCeEEEEecccccccccccccCCchHH
Confidence            8999885  77788999999999999999   778765542    222    468999999999986422100       


Q ss_pred             ------HH----------HH-HHHhhh--------------cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          70 ------ES----------LG-RSTAVK--------------YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        70 ------~~----------~~-~~~~~~--------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                            ..          +. ..+...              ..++++++||++|. ||++++++|...+.
T Consensus       149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~-GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE-GIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC-CchhHHHHHHhhcc
Confidence                  00          01 111110              12368999999999 99999999998765

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.21  E-value=1.2e-10  Score=97.31  Aligned_cols=58  Identities=16%  Similarity=0.115  Sum_probs=46.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |||++++  .+..+++.+|++|+|+|.++..+......|. .+..    .++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~----~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           89 TPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL----RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT----TTCCEEEEEECTTSCC
T ss_pred             CCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH----cCCCEEEEEeCCCCcc
Confidence            8999985  7778999999999999999876666665553 3333    4689999999999864

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.21  E-value=2.9e-11  Score=96.85  Aligned_cols=100  Identities=6%  Similarity=-0.015  Sum_probs=73.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEe-CCCCCCCccCCH--HHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLAN-KLDLEHLRQVDE--SLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~N-K~Dl~~~~~v~~--~~~~~   75 (173)
                      |||++++  ....+++.+|++|+|+| + ...+.+...|+..+...    ++|. |+|+| |+|+ +...+..  ++...
T Consensus        67 tPGh~~f~~~~~~~~~~aD~ailVvd-~-~g~~~qt~e~~~~~~~~----~i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~  139 (370)
T 2elf_A           67 AHSYPKTLKSLITALNISDIAVLCIP-P-QGLDAHTGECIIALDLL----GFKHGIIALTRSDST-HMHAIDELKAKLKV  139 (370)
T ss_dssp             CTTTTTCHHHHHHHHHTCSEEEEEEC-T-TCCCHHHHHHHHHHHHT----TCCEEEEEECCGGGS-CHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHCCEEEEEEc-C-CCCcHHHHHHHHHHHHc----CCCeEEEEEEeccCC-CHHHHHHHHHHHHH
Confidence            8999986  44567899999999999 4 34556666676666553    4777 88899 9999 4332222  44555


Q ss_pred             HhhhcC---CeEEE--EcccC---CcccHHHHHHHHHHHHhc
Q psy2792          76 TAVKYN---CTFHE--VSVAD---NSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~~~~---~~~~e--~Sak~---g~~~v~~lf~~l~~~i~~  109 (173)
                      ++...+   +++++  +||++   +. |++++|+.|.+.+..
T Consensus       140 ~l~~~~~~~~~ii~~~~SA~~~~~g~-gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          140 ITSGTVLQDWECISLNTNKSAKNPFE-GVDELKARINEVAEK  180 (370)
T ss_dssp             HTTTSTTTTCEEEECCCCTTSSSTTT-THHHHHHHHHHHHHH
T ss_pred             HHHhcCCCceEEEecccccccCcCCC-CHHHHHHHHHhhccc
Confidence            555543   68999  99999   99 999999999887654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.19  E-value=8.3e-11  Score=96.09  Aligned_cols=93  Identities=15%  Similarity=-0.003  Sum_probs=67.1

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH-----HHhhhcCCeEE
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR-----STAVKYNCTFH   85 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~-----~~~~~~~~~~~   85 (173)
                      ..+++.+|++++|+|+++..++.+. .+...+..    .++|+++|+||+|+.+.+....++..     .++...+.+++
T Consensus       258 ~~~i~~ad~vllv~d~~~~~~~~~~-~i~~~l~~----~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  332 (439)
T 1mky_A          258 VDSIEKADVVVIVLDATQGITRQDQ-RMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLI  332 (439)
T ss_dssp             HHHHHHCSEEEEEEETTTCCCHHHH-HHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEE
T ss_pred             HHHHhhCCEEEEEEeCCCCCCHHHH-HHHHHHHH----cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEE
Confidence            3578899999999999986665542 22233332    46899999999999765544443332     22223357899


Q ss_pred             EEcccCCcccHHHHHHHHHHHHhc
Q psy2792          86 EVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        86 e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++||++|. ||+++|+.+.+.+..
T Consensus       333 ~~SA~~g~-gv~~l~~~i~~~~~~  355 (439)
T 1mky_A          333 FTSADKGW-NIDRMIDAMNLAYAS  355 (439)
T ss_dssp             ECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             EEECCCCC-CHHHHHHHHHHHHHh
Confidence            99999999 999999999987655

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.19  E-value=8.4e-12  Score=101.93  Aligned_cols=98  Identities=16%  Similarity=0.161  Sum_probs=69.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCC-cEEEEEeCCCCCCCc------cCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNV-PVMLLANKLDLEHLR------QVD   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~-piilv~NK~Dl~~~~------~v~   69 (173)
                      |||++++  ....++..+|++|+|||+++ .+|+.+..|..+..++..   ..++ |+|+|+||+|+.+..      ...
T Consensus        91 tpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~~  169 (435)
T 1jny_A           91 APGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDEKRYKEI  169 (435)
T ss_dssp             CSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCHHHHHHH
T ss_pred             CCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccHHHHHHH
Confidence            8999985  66778999999999999998 788866554433333210   1234 689999999997521      111


Q ss_pred             HHHHHHHhhhcC-----CeEEEEcccCCcccHHHHHH
Q psy2792          70 ESLGRSTAVKYN-----CTFHEVSVADNSPAIYQAFD  101 (173)
Q Consensus        70 ~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~lf~  101 (173)
                      .++...++...+     +.++++||++|. ||.+++.
T Consensus       170 ~~~i~~~~~~~~~~~~~~~~i~iSA~~g~-~v~e~~~  205 (435)
T 1jny_A          170 VDQVSKFMRSYGFNTNKVRFVPVVAPSGD-NITHKSE  205 (435)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEECBTTTTB-TTTBCCS
T ss_pred             HHHHHHHHHHcCCCcCCceEEEeecccCc-ccccccc
Confidence            344556666655     679999999999 9986654

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.18  E-value=7e-11  Score=94.42  Aligned_cols=98  Identities=14%  Similarity=0.099  Sum_probs=70.4

Q ss_pred             hhcccCcEEEEEEeCCChh--hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHHHhhhc---CCeEE
Q psy2792          12 AMICWADGCIIVYSLIDKE--SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRSTAVKY---NCTFH   85 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~--s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~~~~---~~~~~   85 (173)
                      .++..+|++++|+|++++.  +++.+..|...+.... ..+.|+|+|+||+|+.+..... ...+..++...   +..++
T Consensus       253 ~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~-~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~  331 (364)
T 2qtf_A          253 SEAKYSDALILVIDSTFSENLLIETLQSSFEILREIG-VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVI  331 (364)
T ss_dssp             HGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHT-CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             HHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhC-cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEE
Confidence            3588999999999999876  6666666766555543 3578999999999986532100 11222233443   34689


Q ss_pred             EEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          86 EVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        86 e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ++||+++. |++++++.|.+.+....
T Consensus       332 ~~SA~~g~-gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          332 PISALKRT-NLELLRDKIYQLATQLS  356 (364)
T ss_dssp             ECBTTTTB-SHHHHHHHHHHHHHHHC
T ss_pred             EEECCCCc-CHHHHHHHHHHHhcccC
Confidence            99999999 99999999998776533

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.18  E-value=2.5e-11  Score=98.19  Aligned_cols=102  Identities=18%  Similarity=0.155  Sum_probs=73.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC---CHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV---DESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~   75 (173)
                      |||++++  ....++..+|++|+|+|+++... .+...|+..+..    .++| +++|+||+|+.+....   ..++...
T Consensus        82 tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~-~qt~~~l~~~~~----~~ip~iivviNK~Dl~~~~~~~~~~~~~~~~  156 (405)
T 2c78_A           82 CPGHADYIKNMITGAAQMDGAILVVSAADGPM-PQTREHILLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRD  156 (405)
T ss_dssp             CCCSGGGHHHHHHHHTTCSSEEEEEETTTCCC-HHHHHHHHHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHCCEEEEEEECCCCCc-HHHHHHHHHHHH----cCCCEEEEEEECccccCcHHHHHHHHHHHHH
Confidence            8999885  66678999999999999988643 344556655554    3578 8999999999742211   1224455


Q ss_pred             HhhhcC-----CeEEEEcccCCccc------------------HHHHHHHHHHHHhc
Q psy2792          76 TAVKYN-----CTFHEVSVADNSPA------------------IYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g~~~------------------v~~lf~~l~~~i~~  109 (173)
                      ++...+     ++++++||++|. |                  +.++++.|...+..
T Consensus       157 ~l~~~~~~~~~~~~i~~SA~~g~-~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~  212 (405)
T 2c78_A          157 LLNQYEFPGDEVPVIRGSALLAL-EQMHRNPKTRRGENEWVDKIWELLDAIDEYIPT  212 (405)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHH-HHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHhcccccCCCEEEccHHHhh-hhhccccccccCCCcccccHHHHHHHHHhhcCC
Confidence            665555     579999999998 7                  77888888776653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.18  E-value=5.5e-11  Score=96.35  Aligned_cols=100  Identities=14%  Similarity=0.080  Sum_probs=69.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID----KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLG   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~----~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~   73 (173)
                      |+|++++  .....+..+|++|+|+|+++    +++++.+..|    ...   ...|+|+|+||+|+.+...  ...++.
T Consensus        90 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~----~~~---~~~~iivviNK~Dl~~~~~~~~~~~~i  162 (410)
T 1kk1_A           90 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMAL----QII---GQKNIIIAQNKIELVDKEKALENYRQI  162 (410)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHH----HHH---TCCCEEEEEECGGGSCHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHH----HHc---CCCcEEEEEECccCCCHHHHHHHHHHH
Confidence            6787664  33344667899999999984    4566655433    222   2357999999999975321  112344


Q ss_pred             HHHhhh---cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          74 RSTAVK---YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        74 ~~~~~~---~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ..++..   .+++++++||++|. ||+++|++|...+..
T Consensus       163 ~~~l~~~~~~~~~~i~vSA~~g~-gi~~L~~~l~~~~~~  200 (410)
T 1kk1_A          163 KEFIEGTVAENAPIIPISALHGA-NIDVLVKAIEDFIPT  200 (410)
T ss_dssp             HHHHTTSTTTTCCEEECBTTTTB-SHHHHHHHHHHHSCC
T ss_pred             HHHHHhcCcCCCeEEEeeCCCCC-CHHHHHHHHHHhCCC
Confidence            455543   35789999999999 999999999987754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.16  E-value=7.3e-11  Score=97.55  Aligned_cols=94  Identities=15%  Similarity=0.009  Sum_probs=59.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHH-----HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYA-----VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG-   73 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~-----~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-   73 (173)
                      |||++++  ....++.++|++|+|||+++..++..+     ..+...+....  ...|+|||+||+|+.+.++...++. 
T Consensus       118 TPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~--~~~~iIvviNK~Dl~~~~~~~~~~i~  195 (483)
T 3p26_A          118 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL--GIHNLIIAMNKMDNVDWSQQRFEEIK  195 (483)
T ss_dssp             CCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT--TCCCEEEEEECGGGGTTCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc--CCCcEEEEEECcCcccchHHHHHHHH
Confidence            8999885  677899999999999999986544321     11222222222  2346999999999975333222222 


Q ss_pred             ---HHHhhhc-----CCeEEEEcccCCcccHHH
Q psy2792          74 ---RSTAVKY-----NCTFHEVSVADNSPAIYQ   98 (173)
Q Consensus        74 ---~~~~~~~-----~~~~~e~Sak~g~~~v~~   98 (173)
                         ..+....     ++.++++||++|. ||++
T Consensus       196 ~~~~~~l~~~g~~~~~~~~i~iSA~~g~-gi~e  227 (483)
T 3p26_A          196 SKLLPYLVDIGFFEDNINWVPISGFSGE-GVYK  227 (483)
T ss_dssp             HHHHHHHHHHTCCGGGEEEEECCSSSCT-TSSS
T ss_pred             HHHHHHHHHcCCCcccceEEEEeeecCC-Cccc
Confidence               2233332     3579999999999 9875

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.14  E-value=2.3e-11  Score=101.52  Aligned_cols=100  Identities=18%  Similarity=0.103  Sum_probs=71.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--cCCHHHHHHH-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--QVDESLGRST-   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--~v~~~~~~~~-   76 (173)
                      |||++++  ++..++..+|++|+|||+++.........| ..+..    .++|+++|+||+|+.+..  .+..+ ...+ 
T Consensus        59 TPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~~----~~vPiIVViNKiDl~~~~~~~v~~~-l~~~~  132 (537)
T 3izy_P           59 TPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAKD----AHVPIVLAINKCDKAEADPEKVKKE-LLAYD  132 (537)
T ss_dssp             CSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHHT----TTCCEEECCBSGGGTTTSCCSSSSH-HHHTT
T ss_pred             CCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHHH----cCCcEEEEEecccccccchHHHHHH-HHhhh
Confidence            8999884  778899999999999999985544433332 22322    468999999999996432  12111 1111 


Q ss_pred             --hhhc--CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          77 --AVKY--NCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        77 --~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                        +..+  .+.++++||++|. |++++|++|...+.
T Consensus       133 ~~~e~~~~~~~iv~vSAktG~-GI~eLle~I~~l~~  167 (537)
T 3izy_P          133 VVCEDYGGDVQAVHVSALTGE-NMMALAEATIALAE  167 (537)
T ss_dssp             SCCCCSSSSEEECCCCSSSSC-SSHHHHHHHHHHHT
T ss_pred             hhHHhcCCCceEEEEECCCCC-CchhHHHHHHHhhh
Confidence              2222  2579999999999 99999999998765

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.13  E-value=5.1e-11  Score=96.18  Aligned_cols=102  Identities=17%  Similarity=0.058  Sum_probs=71.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC---CHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV---DESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~   75 (173)
                      |||++++  ....++..+|++|+|+|+++....+....| ..+..    .++| +|+|+||+|+.+....   ..++...
T Consensus        73 tpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l-~~~~~----~~vp~iivviNK~Dl~~~~~~~~~~~~~~~~  147 (397)
T 1d2e_A           73 CPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHL-LLARQ----IGVEHVVVYVNKADAVQDSEMVELVELEIRE  147 (397)
T ss_dssp             CSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCSCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHH-HHHHH----cCCCeEEEEEECcccCCCHHHHHHHHHHHHH
Confidence            7899874  566789999999999999984333222333 33333    3578 7899999999742211   1234555


Q ss_pred             HhhhcC-----CeEEEEcccCCccc----------HHHHHHHHHHHHhc
Q psy2792          76 TAVKYN-----CTFHEVSVADNSPA----------IYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g~~~----------v~~lf~~l~~~i~~  109 (173)
                      ++..++     ++++++||++|. |          +.++|+.|.+.+..
T Consensus       148 ~l~~~~~~~~~~~~i~~SA~~g~-n~~~~~~~~g~i~~Ll~~l~~~~p~  195 (397)
T 1d2e_A          148 LLTEFGYKGEETPIIVGSALCAL-EQRDPELGLKSVQKLLDAVDTYIPV  195 (397)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHH-TTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred             HHHHcCCCcccCcEEEeehhhcc-cccCCCccCCcHHHHHHHHHHhCCC
Confidence            666655     579999999976 5          89999999887654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.13  E-value=3e-11  Score=98.61  Aligned_cols=93  Identities=13%  Similarity=0.012  Sum_probs=66.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCC-cEEEEEeCCCCCCCcc--C--CHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNV-PVMLLANKLDLEHLRQ--V--DESLGR   74 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~-piilv~NK~Dl~~~~~--v--~~~~~~   74 (173)
                      |||++++  ....++..+|++|+|+|+++.. +.+...|+..+...    ++ |+|+|+||+|+.+...  +  ..++..
T Consensus       111 tpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~----~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~  185 (434)
T 1zun_B          111 TPGHEQYTRNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLL----GIKHIVVAINKMDLNGFDERVFESIKADYL  185 (434)
T ss_dssp             CCCSGGGHHHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHT----TCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHc----CCCeEEEEEEcCcCCcccHHHHHHHHHHHH
Confidence            8999885  6667899999999999998853 23334454444432    34 6999999999975211  1  123455


Q ss_pred             HHhhhcC-----CeEEEEcccCCcccHHHHH
Q psy2792          75 STAVKYN-----CTFHEVSVADNSPAIYQAF  100 (173)
Q Consensus        75 ~~~~~~~-----~~~~e~Sak~g~~~v~~lf  100 (173)
                      .++..++     +.++++||++|. ||+++|
T Consensus       186 ~~~~~~g~~~~~~~~i~vSA~~g~-gi~~~~  215 (434)
T 1zun_B          186 KFAEGIAFKPTTMAFVPMSALKGD-NVVNKS  215 (434)
T ss_dssp             HHHHTTTCCCSEEEEEECCTTTCT-TTSSCC
T ss_pred             HHHHHhCCCccCceEEEEeccCCC-Cccccc
Confidence            5666666     679999999999 998854

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.10  E-value=1.6e-10  Score=83.35  Aligned_cols=66  Identities=17%  Similarity=0.197  Sum_probs=54.1

Q ss_pred             CCCCCCc--cHhhhccc----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhh---CCCCCcEEEEEeCCCCCCCcc
Q psy2792           2 TIGLTEG--TLTAMICW----ADGCIIVYSLI-DKESFDYAVSTLQNLQRHR---AVNNVPVMLLANKLDLEHLRQ   67 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~----ad~iilv~d~~-~~~s~~~~~~~~~~i~~~~---~~~~~piilv~NK~Dl~~~~~   67 (173)
                      |+|+++.  .+..|+.+    +|++|+|||++ +.++|..+..|+..+....   ...++|+++|+||+|+.+.+.
T Consensus        98 t~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~  173 (193)
T 2ged_A           98 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARP  173 (193)
T ss_dssp             ETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred             CCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence            7898873  67777776    99999999999 8999999999988876543   125799999999999976544

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.09  E-value=2e-10  Score=91.99  Aligned_cols=90  Identities=18%  Similarity=0.135  Sum_probs=69.0

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCC--
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNC--   82 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~--   82 (173)
                      +.++++..++++|+|+|++++.+     .|..++.+..  .+.|+++|+||+||... .+..+....    ++...|+  
T Consensus        64 ~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l--~~~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~  135 (369)
T 3ec1_A           64 MLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA--ADNPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCP  135 (369)
T ss_dssp             HHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC--TTSCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCC
T ss_pred             HHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh--CCCCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCc
Confidence            67788899999999999999763     4666666654  47899999999999653 233333333    3556676  


Q ss_pred             -eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          83 -TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        83 -~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                       .++.+||++|. |++++++.+.+..
T Consensus       136 ~~v~~iSA~~g~-gi~~L~~~I~~~~  160 (369)
T 3ec1_A          136 VDVCLVSAAKGI-GMAKVMEAINRYR  160 (369)
T ss_dssp             SEEEECBTTTTB-THHHHHHHHHHHH
T ss_pred             ccEEEEECCCCC-CHHHHHHHHHhhc
Confidence             68999999999 9999999987654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.09  E-value=1.7e-11  Score=100.93  Aligned_cols=97  Identities=13%  Similarity=0.090  Sum_probs=58.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCc------cCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDK---ESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLR------QVD   69 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~---~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~------~v~   69 (173)
                      |||++++  ....++..+|++|+|||+++.   .+|+....|.+.+.... ..++| +|||+||+|+....      ...
T Consensus       128 tPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~-~~~vp~iivviNK~Dl~~~~~~~~~~~~i  206 (467)
T 1r5b_A          128 APGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLAR-TQGINHLVVVINKMDEPSVQWSEERYKEC  206 (467)
T ss_dssp             CCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHH-HTTCSSEEEEEECTTSTTCSSCHHHHHHH
T ss_pred             CCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHH-HcCCCEEEEEEECccCCCccccHHHHHHH
Confidence            8999885  566778999999999999985   34442223332222211 14577 99999999995311      011


Q ss_pred             HHHHHHHhhhc-------CCeEEEEcccCCcccHHHHH
Q psy2792          70 ESLGRSTAVKY-------NCTFHEVSVADNSPAIYQAF  100 (173)
Q Consensus        70 ~~~~~~~~~~~-------~~~~~e~Sak~g~~~v~~lf  100 (173)
                      .++...++...       ++.++++||++|. |+.++|
T Consensus       207 ~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~-~i~~l~  243 (467)
T 1r5b_A          207 VDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ-NVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHCCCHHHHEEEEECBTTTTB-TTSSCC
T ss_pred             HHHHHHHHHHhcCCCccCCceEEeccccccc-cccccc
Confidence            22345555554       3569999999999 998766

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.07  E-value=1.7e-10  Score=87.57  Aligned_cols=95  Identities=11%  Similarity=-0.008  Sum_probs=60.6

Q ss_pred             hcccCcEEEEEEeCCChhhH-HHHHHHHHHHHhhhCCCCCcEEEEEe-CCCCCCCccCCH-------HHHHHHhhhcCCe
Q psy2792          13 MICWADGCIIVYSLIDKESF-DYAVSTLQNLQRHRAVNNVPVMLLAN-KLDLEHLRQVDE-------SLGRSTAVKYNCT   83 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piilv~N-K~Dl~~~~~v~~-------~~~~~~~~~~~~~   83 (173)
                      +++++|++|+|||+++.... ..+..|+.++....  ...|+++|.| |+|+... .+..       .++..++...+..
T Consensus       102 ~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~--~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~  178 (260)
T 2xtp_A          102 SAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED--AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGR  178 (260)
T ss_dssp             HTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG--GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTC
T ss_pred             cCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch--hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCe
Confidence            78999999999999863222 22223433332211  1345555555 9999743 2211       2233455555432


Q ss_pred             ---E--EEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          84 ---F--HEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        84 ---~--~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                         +  +++||+++. |++++|.+|.+.+....
T Consensus       179 ~~~~~~~~~SA~~~~-gv~~l~~~i~~~~~~~~  210 (260)
T 2xtp_A          179 ICAFNNRAEGSNQDD-QVKELMDCIEDLLMEKN  210 (260)
T ss_dssp             EEECCTTCCHHHHHH-HHHHHHHHHHHHHHHTT
T ss_pred             EEEecCcccccccHH-HHHHHHHHHHHHHHhCC
Confidence               2  789999999 99999999999988765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.07  E-value=2.2e-10  Score=93.72  Aligned_cols=95  Identities=17%  Similarity=0.087  Sum_probs=62.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCc------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKES---FD---YAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLR------   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s---~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~------   66 (173)
                      |||++++  ....++.+||++|+|+|+++...   |+   +....+..+..    .++| +|+|+||+|+....      
T Consensus       102 TPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~----~~v~~iIvviNK~Dl~~~~~~~~~~  177 (439)
T 3j2k_7          102 APGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT----AGVKHLIVLINKMDDPTVNWSNERY  177 (439)
T ss_pred             CCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH----cCCCeEEEEeecCCCcccchHHHHH
Confidence            8999885  66678999999999999988421   21   11222222222    3466 99999999985311      


Q ss_pred             cCCHHHHHHHhhhcC------CeEEEEcccCCcccHHHHHH
Q psy2792          67 QVDESLGRSTAVKYN------CTFHEVSVADNSPAIYQAFD  101 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~------~~~~e~Sak~g~~~v~~lf~  101 (173)
                      +...++...++...+      +.++++||++|. |++++++
T Consensus       178 ~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~-ni~~l~~  217 (439)
T 3j2k_7          178 EECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGA-NLKEQSD  217 (439)
T ss_pred             HHHHHHHHHHHHHhcccccCCeeEEEeeccCCc-ccccccc
Confidence            011223344444444      469999999999 9999655

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.06  E-value=1.6e-11  Score=98.03  Aligned_cols=94  Identities=12%  Similarity=0.101  Sum_probs=59.5

Q ss_pred             hhcccCcEE-----------EEEEeCCC-hhhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHH
Q psy2792          12 AMICWADGC-----------IIVYSLID-KESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRST   76 (173)
Q Consensus        12 ~y~~~ad~i-----------ilv~d~~~-~~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~   76 (173)
                      .|+++++++           ++||++++ ..++..+. .|+..+     ..++|+|+|+||+|+...+++..  +++..+
T Consensus       128 ~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~  202 (361)
T 2qag_A          128 RYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-----HNKVNIVPVIAKADTLTLKERERLKKRILDE  202 (361)
T ss_dssp             HHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            777776654           37777765 44566554 354443     25689999999999976555544  467777


Q ss_pred             hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        77 ~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      +..+++.+|++||+++. + ++.|.++...+.+..+
T Consensus       203 ~~~~~i~~~~~Sa~~~~-~-~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          203 IEEHNIKIYHLPDAESD-E-DEDFKEQTRLLKASIP  236 (361)
T ss_dssp             TTCC-CCSCCCC-----------CHHHHHHHHHTCS
T ss_pred             HHHCCCCEEeCCCcCCC-c-chhHHHHHHHHHhcCC
Confidence            88889999999999999 8 8899999888876544

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.06  E-value=4.4e-11  Score=99.10  Aligned_cols=95  Identities=21%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC--ccCCHHH--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL--RQVDESL--   72 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~~--   72 (173)
                      |||++++  ++..++..+|++|+|||+++   +++++.+    ..+..    .++|+|+|+||+|+.+.  ..+..+.  
T Consensus        58 TPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l----~~~~~----~~vPiIVviNKiDl~~~~~~~v~~~l~~  129 (501)
T 1zo1_I           58 TPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAI----QHAKA----AQVPVVVAVNKIDKPEADPDRVKNELSQ  129 (501)
T ss_dssp             CCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHH----HHHHH----TTCCEEEEEECSSSSTTCCCCTTCCCCC
T ss_pred             CCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHH----HHHHh----cCceEEEEEEeccccccCHHHHHHHHHH
Confidence            8999885  66778999999999999988   4454433    22222    46899999999999642  1111110  


Q ss_pred             HHHHhhhcC--CeEEEEcccCCcccHHHHHHHHHH
Q psy2792          73 GRSTAVKYN--CTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        73 ~~~~~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      ...++..++  ++++++||++|. ||+++|++|..
T Consensus       130 ~~~~~~~~~~~~~~v~vSAktG~-gI~eLle~I~~  163 (501)
T 1zo1_I          130 YGILPEEWGGESQFVHVSAKAGT-GIDELLDAILL  163 (501)
T ss_dssp             CCCCTTCCSSSCEEEECCTTTCT-TCTTHHHHTTT
T ss_pred             hhhhHHHhCCCccEEEEeeeecc-Ccchhhhhhhh
Confidence            011122333  689999999999 99999999875

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.04  E-value=6.8e-11  Score=91.31  Aligned_cols=93  Identities=13%  Similarity=0.021  Sum_probs=63.1

Q ss_pred             cHhhhcccCcEEE-EEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh--cC-CeE
Q psy2792           9 TLTAMICWADGCI-IVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK--YN-CTF   84 (173)
Q Consensus         9 ~~~~y~~~ad~ii-lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--~~-~~~   84 (173)
                      +...|+++++.+| +|+|.++..+......|+..+..    .+.|+++|+||+|+.+......+........  .+ ..+
T Consensus       154 ~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~----~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  229 (299)
T 2aka_B          154 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV  229 (299)
T ss_dssp             HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred             HHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCC----CCCeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEE
Confidence            6667899999777 79999875444433345544432    4689999999999975444223322211111  13 357


Q ss_pred             EEEcccCCcccHHHHHHHHHHH
Q psy2792          85 HEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        85 ~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                      +++||++|. |++++|++|...
T Consensus       230 ~~~SA~~~~-gi~~l~~~l~~~  250 (299)
T 2aka_B          230 VNRSQKDID-GKKDITAALAAE  250 (299)
T ss_dssp             CCCCCBCTT-SCBCHHHHHHHH
T ss_pred             ECCChhhcc-ccccHHHHHHHH
Confidence            899999999 999999999863

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.04  E-value=1.1e-10  Score=99.08  Aligned_cols=94  Identities=16%  Similarity=0.078  Sum_probs=60.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH---
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE---SFD---YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE---   70 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~---   70 (173)
                      |||++++  ....+++++|++|+|+|+++..   +|.   .....+..+.. .  ...|+|||+||+|+.+......   
T Consensus       252 TPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~-l--gi~~iIVVvNKiDl~~~~~~~~~ei  328 (611)
T 3izq_1          252 APGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS-L--GIHNLIIAMNKMDNVDWSQQRFEEI  328 (611)
T ss_dssp             CCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHT-T--TCCEEEEEEECTTTTTTCHHHHHHH
T ss_pred             CCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHH-c--CCCeEEEEEecccccchhHHHHHHH
Confidence            8999885  6677899999999999998742   111   11111111221 1  2235999999999975322212   


Q ss_pred             -HHHHHHhhhcC-----CeEEEEcccCCcccHHHH
Q psy2792          71 -SLGRSTAVKYN-----CTFHEVSVADNSPAIYQA   99 (173)
Q Consensus        71 -~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~l   99 (173)
                       ++...++...+     +.+++|||++|. ||.++
T Consensus       329 ~~~l~~~l~~~g~~~~~~~~i~vSA~tG~-gI~el  362 (611)
T 3izq_1          329 KSKLLPYLVDIGFFEDNINWVPISGFSGE-GVYKI  362 (611)
T ss_dssp             HHHHHHHHHHHTCCGGGCEEEECCTTTCT-TTSSC
T ss_pred             HHHHHHHHHhhcccccCccEEeeecccCC-Ccccc
Confidence             22333343333     579999999999 99876

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.02  E-value=2.5e-10  Score=101.92  Aligned_cols=101  Identities=17%  Similarity=0.144  Sum_probs=72.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC---CHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV---DESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v---~~~~~~~   75 (173)
                      |||++++  ....++..+|++|+|+|+++... .+...|+..+...    ++| +|||+||+|+.+....   ..+++..
T Consensus       366 TPGHedF~~~mi~gas~AD~aILVVDAtdGv~-~QTrEhL~ll~~l----gIP~IIVVINKiDLv~d~e~le~i~eEi~e  440 (1289)
T 3avx_A          366 CPGHADYVKNMITGAAQMDGAILVVAATDGPM-PQTREHILLGRQV----GVPYIIVFLNKCDMVDDEELLELVEMEVRE  440 (1289)
T ss_dssp             CCCHHHHHHHHHHTSCCCSEEEEEEETTTCSC-TTHHHHHHHHHHH----TCSCEEEEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHhhCCEEEEEEcCCccCc-HHHHHHHHHHHHc----CCCeEEEEEeecccccchhhHHHHHHHHHH
Confidence            7899885  55678999999999999998532 2334455545442    478 7899999999742211   1234555


Q ss_pred             HhhhcC-----CeEEEEcccCC--------cccHHHHHHHHHHHHh
Q psy2792          76 TAVKYN-----CTFHEVSVADN--------SPAIYQAFDHLLTESR  108 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g--------~~~v~~lf~~l~~~i~  108 (173)
                      ++...+     ++++++||++|        . ||.++|+.|...+.
T Consensus       441 lLk~~G~~~~~vp~IpvSAktG~ng~~~w~e-GI~eLleaL~~~Ip  485 (1289)
T 3avx_A          441 LLSQYDFPGDDTPIVRGSALKALEGDAEWEA-KILELAGFLDSYIP  485 (1289)
T ss_dssp             HHHHTTSCTTTCCEEECCSTTTTTCCHHHHH-HHHHHHHHHHHTSC
T ss_pred             HHHhccccccceeEEEEEeccCCCCCccccc-cchhhHhHHhhhcC
Confidence            666655     57999999999        5 79999999887664

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=98.99  E-value=2.3e-10  Score=93.88  Aligned_cols=90  Identities=16%  Similarity=0.076  Sum_probs=60.0

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCC-eEEEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNC-TFHEV   87 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~-~~~e~   87 (173)
                      ....|+++||++|+|+|..+.  +.....|+.++...   .++|++||+||+|+.+..    ....++. ..++ .++++
T Consensus        95 ~~~~~~~~ad~il~VvD~~~~--~~~~d~~l~~~l~~---~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~i  164 (456)
T 4dcu_A           95 QAEIAMDEADVIIFMVNGREG--VTAADEEVAKILYR---TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPI  164 (456)
T ss_dssp             HHHHHHHHCSEEEEEEESSSC--SCHHHHHHHHHHTT---CCSCEEEEEECC-------------CCSG-GGSSSSEEEC
T ss_pred             HHHhhHhhCCEEEEEEeCCCC--CChHHHHHHHHHHH---cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEe
Confidence            667889999999999998764  33334455444432   578999999999986322    1111121 2232 46899


Q ss_pred             cccCCcccHHHHHHHHHHHHhc
Q psy2792          88 SVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ||++|. |+.++|+.+.+.+..
T Consensus       165 SA~~g~-gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          165 SGTHGL-GLGDLLDAVAEHFKN  185 (456)
T ss_dssp             CTTTCT-THHHHHHHHHTTGGG
T ss_pred             eccccc-chHHHHHHHHhhccc
Confidence            999999 999999999887754

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=98.98  E-value=1.8e-10  Score=94.60  Aligned_cols=93  Identities=14%  Similarity=0.030  Sum_probs=62.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCcc----C
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE---SFD---YAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQ----V   68 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~----v   68 (173)
                      |||++++  ....++..+|++|+|+|+++..   +|+   +...++..+..    .++| +|+|+||+|+.+...    .
T Consensus        92 tPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~----~~v~~iivviNK~Dl~~~~~~~~~~  167 (458)
T 1f60_A           92 APGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT----LGVRQLIVAVNKMDSVKWDESRFQE  167 (458)
T ss_dssp             CCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH----TTCCEEEEEEECGGGGTTCHHHHHH
T ss_pred             CCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH----cCCCeEEEEEEccccccCCHHHHHH
Confidence            8999885  6677899999999999998752   332   22223333332    3465 999999999963111    1


Q ss_pred             CHHHHHHHhhhcC-----CeEEEEcccCCcccHHHH
Q psy2792          69 DESLGRSTAVKYN-----CTFHEVSVADNSPAIYQA   99 (173)
Q Consensus        69 ~~~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~l   99 (173)
                      ..++...++..++     +.++++||++|. |+.++
T Consensus       168 i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~-nv~~~  202 (458)
T 1f60_A          168 IVKETSNFIKKVGYNPKTVPFVPISGWNGD-NMIEA  202 (458)
T ss_dssp             HHHHHHHHHHHHTCCGGGCCEEECCTTTCB-TTTBC
T ss_pred             HHHHHHHHHHHcCCCccCceEEEeecccCc-Ccccc
Confidence            1233445555555     579999999999 98754

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=98.97  E-value=2.7e-09  Score=86.56  Aligned_cols=95  Identities=15%  Similarity=0.118  Sum_probs=72.1

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN   92 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g   92 (173)
                      +..++.+|+|+|++ ..++.++..|..++..+.. ....|.+||+||+|+... . ..+.....+...++.++.+||+++
T Consensus       233 ~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-~~~~l~~~l~~~g~~vi~iSA~~g  309 (416)
T 1udx_A          233 IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-AVKALADALAREGLAVLPVSALTG  309 (416)
T ss_dssp             HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-HHHHHHHHHHTTTSCEEECCTTTC
T ss_pred             HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-HHHHHHHHHHhcCCeEEEEECCCc
Confidence            34699999999998 5678888888777766531 125799999999998653 1 123344455556788999999999


Q ss_pred             cccHHHHHHHHHHHHhcCCC
Q psy2792          93 SPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        93 ~~~v~~lf~~l~~~i~~~~~  112 (173)
                      . ||+++|++|.+.+.+...
T Consensus       310 ~-gi~eL~~~i~~~l~~~~~  328 (416)
T 1udx_A          310 A-GLPALKEALHALVRSTPP  328 (416)
T ss_dssp             T-THHHHHHHHHHHHHTSCC
T ss_pred             c-CHHHHHHHHHHHHHhccc
Confidence            9 999999999999987543

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=98.96  E-value=5.2e-10  Score=96.21  Aligned_cols=103  Identities=17%  Similarity=0.126  Sum_probs=74.1

Q ss_pred             CCCCCC-----ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH-----
Q psy2792           2 TIGLTE-----GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES-----   71 (173)
Q Consensus         2 TaG~e~-----~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~-----   71 (173)
                      |||+.+     ..+..|+.+||++|+|+|.+++.++.+...|...+..    .+.|+++|+||+|+.....++.+     
T Consensus       181 TPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~----~~~~iiiVlNK~Dl~~~~~~~~ee~e~l  256 (695)
T 2j69_A          181 SPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG----RGLTVFFLVNAWDQVRESLIDPDDVEEL  256 (695)
T ss_dssp             CCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT----SCCCEEEEEECGGGGGGGCSSTTCHHHH
T ss_pred             CCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh----hCCCEEEEEECcccccccccChhhHHHH
Confidence            788765     2667899999999999999988787777666554433    35789999999998654322211     


Q ss_pred             -----HHH-----HHhhh--------cCCeEEEEccc--------------CCcccHHHHHHHHHHHHhc
Q psy2792          72 -----LGR-----STAVK--------YNCTFHEVSVA--------------DNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        72 -----~~~-----~~~~~--------~~~~~~e~Sak--------------~g~~~v~~lf~~l~~~i~~  109 (173)
                           ...     .+...        ....+|+|||+              ++. |+++++..|.+.+..
T Consensus       257 ~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~-Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          257 QASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT-GFPKFMDSLNTFLTR  325 (695)
T ss_dssp             HHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS-SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc-CHHHHHHHHHHHHHH
Confidence                 111     11111        12358999999              999 999999999987765

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=98.94  E-value=2.9e-09  Score=91.18  Aligned_cols=57  Identities=18%  Similarity=0.172  Sum_probs=43.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|++++  ....+++.+|++++|+|.++...... ..|+..+..    .++|+++|+||+|+.
T Consensus        81 TpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt-~~~~~~~~~----~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           81 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGT-ERAWTVAER----LGLPRMVVVTKLDKG  139 (665)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHH-HHHHHHHHH----TTCCEEEEEECGGGC
T ss_pred             CCCccchHHHHHHHHhhcCcEEEEEcCCcccchhH-HHHHHHHHH----ccCCEEEEecCCchh
Confidence            8999884  77889999999999999887543332 344444444    358999999999986

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=98.87  E-value=8.2e-10  Score=87.91  Aligned_cols=92  Identities=11%  Similarity=0.073  Sum_probs=66.0

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      +...|+.++|++|+|+|.++.+...  ..|+..+.... ..+.|+|+|+||+|+.+......+....+...++..|+++|
T Consensus       165 ~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~-~~~~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~  241 (360)
T 3t34_A          165 MVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVD-PSGDRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVV  241 (360)
T ss_dssp             HHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSC-TTCTTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEEC
T ss_pred             HHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhc-ccCCCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEE
Confidence            6678999999999999876543322  33444444443 35689999999999976555555555555556678899999


Q ss_pred             ccCCcccHHHHHHHHH
Q psy2792          89 VADNSPAIYQAFDHLL  104 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~  104 (173)
                      ++++. ++++.+..+.
T Consensus       242 ~~s~~-~i~~~~~~~~  256 (360)
T 3t34_A          242 NRSQA-DINKNVDMIA  256 (360)
T ss_dssp             CCCHH-HHHTTCCHHH
T ss_pred             ECChH-HhccCCCHHH
Confidence            99998 8887665433

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.86  E-value=9.1e-09  Score=77.11  Aligned_cols=96  Identities=6%  Similarity=-0.068  Sum_probs=62.1

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCC------HHHHHHHhhhcCCe
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVD------ESLGRSTAVKYNCT   83 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~------~~~~~~~~~~~~~~   83 (173)
                      ..++.++|++|+|+|+++....  ...|+..+..... ....|++||+||+|+.....+.      .+....+++..+..
T Consensus       107 ~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~  184 (239)
T 3lxx_A          107 LLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDR  184 (239)
T ss_dssp             HHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSS
T ss_pred             HhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCE
Confidence            3456788999999998764331  1234444432210 0236999999999986554443      23566777888877


Q ss_pred             EEEEcccCC-----cccHHHHHHHHHHHHhc
Q psy2792          84 FHEVSVADN-----SPAIYQAFDHLLTESRG  109 (173)
Q Consensus        84 ~~e~Sak~g-----~~~v~~lf~~l~~~i~~  109 (173)
                      |+.+++..+     . +|.++|..+...+.+
T Consensus       185 ~~~~~~~~~~~~~~~-~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          185 YCALNNKATGAEQEA-QRAQLLGLIQRVVRE  214 (239)
T ss_dssp             EEECCTTCCHHHHHH-HHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCccccHH-HHHHHHHHHHHHHHH
Confidence            887776644     6 899999999887765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.86  E-value=3e-09  Score=78.47  Aligned_cols=85  Identities=12%  Similarity=0.071  Sum_probs=59.7

Q ss_pred             ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCC
Q psy2792          15 CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADN   92 (173)
Q Consensus        15 ~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g   92 (173)
                      ..++.+|+|+|+++...  ....+..   ..    +.|+++|+||+|+.+......++...++...  ++.++++||++|
T Consensus       128 ~~~~~~i~vvd~~~~~~--~~~~~~~---~~----~~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g  198 (221)
T 2wsm_A          128 LGENYRVVMVSVTEGDD--VVEKHPE---IF----RVADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTG  198 (221)
T ss_dssp             CSCSEEEEEEEGGGCTT--HHHHCHH---HH----HTCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTT
T ss_pred             cccCcEEEEEeCCCcch--hhhhhhh---hh----hcCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCC
Confidence            46788999999876532  1111111   11    3789999999998643334556665555543  478999999999


Q ss_pred             cccHHHHHHHHHHHHhc
Q psy2792          93 SPAIYQAFDHLLTESRG  109 (173)
Q Consensus        93 ~~~v~~lf~~l~~~i~~  109 (173)
                      . |++++|++|.+.+..
T Consensus       199 ~-gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          199 K-GFEEWIDFLRGILNV  214 (221)
T ss_dssp             B-THHHHHHHHHHHHC-
T ss_pred             C-CHHHHHHHHHHHHHH
Confidence            9 999999999987754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.85  E-value=4.1e-09  Score=81.41  Aligned_cols=94  Identities=13%  Similarity=-0.000  Sum_probs=66.4

Q ss_pred             CCCCCc---cHhhhcccCcEEEEEEeCCChhhHH--HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHh
Q psy2792           3 IGLTEG---TLTAMICWADGCIIVYSLIDKESFD--YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTA   77 (173)
Q Consensus         3 aG~e~~---~~~~y~~~ad~iilv~d~~~~~s~~--~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~   77 (173)
                      +|....   ....++.++|++|+|+|+.++.++.  .+..|+         .+.|+++|+||+||.+...  .+....+.
T Consensus         7 PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l---------~~kp~ilVlNK~DL~~~~~--~~~~~~~~   75 (282)
T 1puj_A            7 PGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL---------KNKPRIMLLNKADKADAAV--TQQWKEHF   75 (282)
T ss_dssp             --CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC---------SSSCEEEEEECGGGSCHHH--HHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH---------CCCCEEEEEECcccCCHHH--HHHHHHHH
Confidence            455442   3445789999999999999987664  333332         4689999999999964211  11223344


Q ss_pred             hhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          78 VKYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        78 ~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +..++.++.+||+++. |+++++..+.+.+.
T Consensus        76 ~~~g~~~i~iSA~~~~-gi~~L~~~i~~~l~  105 (282)
T 1puj_A           76 ENQGIRSLSINSVNGQ-GLNQIVPASKEILQ  105 (282)
T ss_dssp             HTTTCCEEECCTTTCT-TGGGHHHHHHHHHH
T ss_pred             HhcCCcEEEEECCCcc-cHHHHHHHHHHHHH
Confidence            4557889999999999 99999988877664

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.80  E-value=1.3e-09  Score=83.56  Aligned_cols=86  Identities=9%  Similarity=0.084  Sum_probs=48.2

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhhhcCCeEEEEcccCCcc
Q psy2792          17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAVKYNCTFHEVSVADNSP   94 (173)
Q Consensus        17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~~~~~~~e~Sak~g~~   94 (173)
                      +|+++++++.+.......-..++..+..     ++|+|+|+||+|+....++..  +.........++.++++||+++. 
T Consensus       116 ~~~~l~~i~~~~~~~~~~d~~~l~~l~~-----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~-  189 (274)
T 3t5d_A          116 VQCCLYFIAPSGHGLKPLDIEFMKRLHE-----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDE-  189 (274)
T ss_dssp             CCEEEEEECSCCSSCCHHHHHHHHHHTT-----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-------
T ss_pred             eeEEEEEecCCCCCCCHHHHHHHHHHhc-----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCCh-
Confidence            8899999987763222222334444432     689999999999864322211  22344455678889999999999 


Q ss_pred             cHHHHHHHHHHHHh
Q psy2792          95 AIYQAFDHLLTESR  108 (173)
Q Consensus        95 ~v~~lf~~l~~~i~  108 (173)
                      |+++++.+|.+.+.
T Consensus       190 ~~~~l~~~l~~~~p  203 (274)
T 3t5d_A          190 EENKLVKKIKDRLP  203 (274)
T ss_dssp             -----CHHHHHTCS
T ss_pred             hHHHHHHHHhcCCC
Confidence            99999999987653

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=98.78  E-value=3.8e-08  Score=84.60  Aligned_cols=58  Identities=22%  Similarity=0.230  Sum_probs=47.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|+.++  .+..+++.+|++|+|+|.++..++.....|.. +..    .++|+++|+||+|+..
T Consensus        84 TPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~----~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           84 TPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK----YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             CCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             CcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence            8999884  77889999999999999999877777666654 333    3689999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.77  E-value=6.2e-08  Score=80.91  Aligned_cols=58  Identities=19%  Similarity=0.252  Sum_probs=42.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |||++++  ....+++.+|++|+|+|+++....     |...+.......++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~-----~t~~~~~~~~~~~ipiivviNK~Dl~~  148 (529)
T 2h5e_A           89 TPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVED-----RTRKLMEVTRLRDTPILTFMNKLDRDI  148 (529)
T ss_dssp             CCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCH-----HHHHHHHHHTTTTCCEEEEEECTTSCC
T ss_pred             CCCChhHHHHHHHHHHHCCEEEEEEeCCccchH-----HHHHHHHHHHHcCCCEEEEEcCcCCcc
Confidence            8999884  667899999999999999875322     222222222235799999999999864

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.77  E-value=1.6e-08  Score=78.53  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=61.7

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhH-HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESF-DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV   87 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~-~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~   87 (173)
                      ....|+.++|++|+|+|.++.... .....+...+.    ..+.|+++|+||+|+........+.........+..|+++
T Consensus       160 ~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~----~~~~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v  235 (315)
T 1jwy_B          160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGV  235 (315)
T ss_dssp             HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEEC
T ss_pred             HHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhC----CCCCcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEE
Confidence            566789999999999997543211 11112222232    2468999999999997544322222221111222556776


Q ss_pred             ccc---C---CcccHHHHHHHHHHHHhcCCC
Q psy2792          88 SVA---D---NSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        88 Sak---~---g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      |+.   +   +. |+.+++..+...+...+.
T Consensus       236 ~~~sa~~~~~~~-gv~~l~~~~~~~~~~~~~  265 (315)
T 1jwy_B          236 INRSQEDIIAKK-SIRESLKSEILYFKNHPI  265 (315)
T ss_dssp             CCCCHHHHSSSC-CHHHHHHHHHHHHHTCTT
T ss_pred             ecCChhhhccCC-CHHHHHHHHHHHHhCCCc
Confidence            655   4   67 899999999988877554

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.74  E-value=2.6e-08  Score=72.61  Aligned_cols=87  Identities=13%  Similarity=0.068  Sum_probs=60.8

Q ss_pred             ccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--CCHHHHHHHhhhcC--CeEEEEc
Q psy2792          15 CWADGCIIVYSLIDKESFDY--AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--VDESLGRSTAVKYN--CTFHEVS   88 (173)
Q Consensus        15 ~~ad~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--v~~~~~~~~~~~~~--~~~~e~S   88 (173)
                      ..+|++++|+|+++..++..  +..|+.   .    .++|+++|+||+|+.+..+  ...+.+..++...+  +.++++|
T Consensus       107 ~~~~~~~~v~d~~~~~~~~~~~~~~~~~---~----~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~S  179 (210)
T 1pui_A          107 QSLQGLVVLMDIRHPLKDLDQQMIEWAV---D----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFS  179 (210)
T ss_dssp             TTEEEEEEEEETTSCCCHHHHHHHHHHH---H----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECB
T ss_pred             hcccEEEEEEECCCCCchhHHHHHHHHH---H----cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEe
Confidence            57899999999998655432  233332   2    4589999999999864321  11234445555544  5688999


Q ss_pred             ccCCcccHHHHHHHHHHHHhc
Q psy2792          89 VADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        89 ak~g~~~v~~lf~~l~~~i~~  109 (173)
                      |+++. |++++++.|.+.+.+
T Consensus       180 al~~~-~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          180 SLKKQ-GVDKLRQKLDTWFSE  199 (210)
T ss_dssp             TTTTB-SHHHHHHHHHHHHC-
T ss_pred             ecCCC-CHHHHHHHHHHHHhh
Confidence            99999 999999999887654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.71  E-value=8.4e-09  Score=78.02  Aligned_cols=101  Identities=10%  Similarity=-0.047  Sum_probs=61.4

Q ss_pred             CCCCCCccHh--------hhcccCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLTEGTLT--------AMICWADGCIIVYSLID---KESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e~~~~~--------~y~~~ad~iilv~d~~~---~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~   70 (173)
                      |+|+.+....        .++.+ +++|+|+|...   +..+.....+.......   .++|+++|+||+|+.....+  
T Consensus       116 tpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~---~~~p~~iv~NK~D~~~~~~~--  189 (262)
T 1yrb_A          116 TPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSEEEK--  189 (262)
T ss_dssp             CCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCHHHH--
T ss_pred             CCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcc---cCCCeEEEEecccccccccH--
Confidence            7787653111        24566 88888888754   33333222222111111   35899999999998643221  


Q ss_pred             HHHHHH----------------------------hhhcC--CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          71 SLGRST----------------------------AVKYN--CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        71 ~~~~~~----------------------------~~~~~--~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++...+                            +..++  ..++++||+++. |++++|++|.+.+..
T Consensus       190 ~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~-gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          190 ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTRE-GFEDLETLAYEHYCT  257 (262)
T ss_dssp             HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcc-cHHHHHHHHHHHhcc
Confidence            111111                            23333  478999999999 999999999987764

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=98.69  E-value=4.3e-09  Score=88.96  Aligned_cols=97  Identities=15%  Similarity=0.100  Sum_probs=57.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDK----------ESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQV   68 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~----------~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v   68 (173)
                      |||++++  ....++..+|++|+|+|+++.          ++.+.+    ..+..    .++| +|||+||+|+.+....
T Consensus       262 TPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l----~~~~~----lgip~iIvviNKiDl~~~~~~  333 (592)
T 3mca_A          262 APGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA----YLLRA----LGISEIVVSVNKLDLMSWSED  333 (592)
T ss_dssp             EESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH----HHHHH----SSCCCEEEEEECGGGGTTCHH
T ss_pred             CCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH----HHHHH----cCCCeEEEEEeccccccccHH
Confidence            7899885  566788999999999999853          333322    22222    2465 9999999998642110


Q ss_pred             ----CHHHHHHHh-hhcCC-----eEEEEcccCCcccHH--------------HHHHHHHHHH
Q psy2792          69 ----DESLGRSTA-VKYNC-----TFHEVSVADNSPAIY--------------QAFDHLLTES  107 (173)
Q Consensus        69 ----~~~~~~~~~-~~~~~-----~~~e~Sak~g~~~v~--------------~lf~~l~~~i  107 (173)
                          ...+...+. ...++     .++++||++|. ||.              .|++.|...+
T Consensus       334 ~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~-gI~e~~~~~~~~w~~g~~Lle~l~~~~  395 (592)
T 3mca_A          334 RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGT-NLIQKDSSDLYKWYKGPTLLSALDQLV  395 (592)
T ss_dssp             HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCS-SSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCc-ccccccccccccccchHHHHHHHHhhc
Confidence                012333344 44454     69999999999 998              6777665543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.69  E-value=5.2e-09  Score=83.20  Aligned_cols=96  Identities=14%  Similarity=0.178  Sum_probs=62.4

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh---
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV---   78 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---   78 (173)
                      |||.... ....+..+|++|+|+|.+..+.+..+..+         ..+.|+++|+||+|+....... .....+..   
T Consensus       179 TpGi~~~-~~~~~~~aD~vl~V~d~~~~~~~~~l~~~---------~~~~p~ivVlNK~Dl~~~~~~~-~~~~~l~~~l~  247 (355)
T 3p32_A          179 TVGVGQS-EVAVANMVDTFVLLTLARTGDQLQGIKKG---------VLELADIVVVNKADGEHHKEAR-LAARELSAAIR  247 (355)
T ss_dssp             ECSCSSH-HHHHHTTCSEEEEEEESSTTCTTTTCCTT---------SGGGCSEEEEECCCGGGHHHHH-HHHHHHHHHHH
T ss_pred             CCCCCcH-HHHHHHhCCEEEEEECCCCCccHHHHHHh---------HhhcCCEEEEECCCCcChhHHH-HHHHHHHHHHh
Confidence            6675432 22345899999999998765444222110         1246899999999986422211 11112221   


Q ss_pred             -------hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 -------KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 -------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                             .++.+++++||++|. ||++++++|.+.+..
T Consensus       248 ~~~~~~~~~~~~vi~iSA~~g~-Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          248 LIYPREALWRPPVLTMSAVEGR-GLAELWDTVERHRQV  284 (355)
T ss_dssp             HHSTTCCSCCCCEEEEBGGGTB-SHHHHHHHHHHHHHH
T ss_pred             hccccccCCCCceEEEEcCCCC-CHHHHHHHHHHHHHH
Confidence                   124679999999999 999999999988754

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.65  E-value=1.7e-09  Score=80.00  Aligned_cols=58  Identities=12%  Similarity=0.155  Sum_probs=46.3

Q ss_pred             CcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          51 VPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        51 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .|.++|+||+|+.+.+.+..++...++...  ++.++++||++|. |++++|++|.+.+.+
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~-gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTME-GFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCC-CHHHHHHHHHHHHHh
Confidence            456999999998754445666666666654  5789999999999 999999999987754

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=98.63  E-value=2e-07  Score=80.32  Aligned_cols=58  Identities=19%  Similarity=0.221  Sum_probs=45.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|++++  ....+++.+|++|+|+|+++.........|. .+..    .++|+++|+||+|+..
T Consensus        89 TPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~-~~~~----~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           89 TPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWR-QANK----YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHH-HHHH----cCCCEEEEEeCCCccc
Confidence            8999884  7778999999999999999876555544453 2322    4689999999999853

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=98.63  E-value=2.4e-07  Score=79.67  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=46.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH   64 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~   64 (173)
                      |+|+.++  ....+++.+|++|+|+|.++..++.....|.. +..    .++|+++|+||+|+..
T Consensus        82 TPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~----~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           82 TPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT----YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             CCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCCEEEEEECTTSTT
T ss_pred             CcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH----cCCCEEEEEECCCccc
Confidence            8999884  67788999999999999998777776666643 443    3589999999999864

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.62  E-value=5.6e-09  Score=84.32  Aligned_cols=56  Identities=20%  Similarity=0.195  Sum_probs=36.2

Q ss_pred             CCcEEEEEeCCCCCCCccCCHHHHHHHhh---hcCCeEEEEcccCCcccHHHHHH-HHHHHHhcCC
Q psy2792          50 NVPVMLLANKLDLEHLRQVDESLGRSTAV---KYNCTFHEVSVADNSPAIYQAFD-HLLTESRGGP  111 (173)
Q Consensus        50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~---~~~~~~~e~Sak~g~~~v~~lf~-~l~~~i~~~~  111 (173)
                      ..|+++|+||+|+..     .+....+..   ..+..++.+||+.+. ++.+++. .+++.+...+
T Consensus       214 ~kP~i~v~NK~D~~~-----~~~l~~l~~~~~~~~~~vv~iSA~~e~-~l~~L~~~~l~~~~p~~~  273 (397)
T 1wxq_A          214 NKPMVIAANKADAAS-----DEQIKRLVREEEKRGYIVIPTSAAAEL-TLRKAAKAGFIEYIPGAS  273 (397)
T ss_dssp             HSCEEEEEECGGGSC-----HHHHHHHHHHHHHTTCEEEEECHHHHH-HHHSCSSSCCCCSCC---
T ss_pred             CCCEEEEEeCccccc-----hHHHHHHHHHHhhcCCcEEEEeccchh-hHHHHHhhhhhhhcCCCc
Confidence            389999999999852     222333322   236789999999999 9988765 4444333333

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=98.60  E-value=5.7e-09  Score=81.24  Aligned_cols=61  Identities=13%  Similarity=0.045  Sum_probs=41.7

Q ss_pred             CCCcEEEEEeCCCCCCCccC--CHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          49 NNVPVMLLANKLDLEHLRQV--DESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        49 ~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .++++++|+||+|+...+++  ..+++..++..+++.||++||+++  |++++|..+++.+.+..
T Consensus       154 ~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~--~v~e~f~~l~~~i~~~~  216 (301)
T 2qnr_A          154 NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES--DEDEDFKEQTRLLKASI  216 (301)
T ss_dssp             TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC-----------CHHHHHHHHTTC
T ss_pred             hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc--cccHHHHHHHHHhhcCC
Confidence            46899999999999754433  245677888889999999999998  69999999999887643

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.59  E-value=6.6e-09  Score=84.36  Aligned_cols=93  Identities=9%  Similarity=0.006  Sum_probs=52.1

Q ss_pred             HhhhcccCcEEEEEEeCCCh-hhHHHHH-HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhhhcCCeEE
Q psy2792          10 LTAMICWADGCIIVYSLIDK-ESFDYAV-STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAVKYNCTFH   85 (173)
Q Consensus        10 ~~~y~~~ad~iilv~d~~~~-~s~~~~~-~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~~~~~~~   85 (173)
                      .+.++.++++.+++|+.+.. .+|..+. .|+..+.     .++|+|+|+||+|+...+++..  +.+..++..+++.+|
T Consensus       130 aRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~-----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~  204 (418)
T 2qag_C          130 NRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH-----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIY  204 (418)
T ss_dssp             CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred             HHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEE
Confidence            34567777776666665543 3455554 5766663     3689999999999876555544  566777888899999


Q ss_pred             EEcccCCcccHHHHHHHHHHHHh
Q psy2792          86 EVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        86 e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ++||+++. +++++|..+...++
T Consensus       205 ~~sa~~~~-~v~~~~~~l~~~iP  226 (418)
T 2qag_C          205 EFPETDDE-EENKLVKKIKDRLP  226 (418)
T ss_dssp             CCC------------------CC
T ss_pred             eCCCCCCc-CHHHHHHHHHhhCC
Confidence            99999999 99999988877554

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.49  E-value=4.7e-08  Score=76.29  Aligned_cols=87  Identities=15%  Similarity=0.169  Sum_probs=59.0

Q ss_pred             cHhhhcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CHHHHHHHhhhcCCeEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DESLGRSTAVKYNCTFH   85 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~~   85 (173)
                      +.+..+.++|.+++|+|+.+|. +...+..++..+..    .++|.+||.||+||.+....  ..+....+....|+.++
T Consensus        79 l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~----~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~  154 (307)
T 1t9h_A           79 LIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY  154 (307)
T ss_dssp             ETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred             hhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEE
Confidence            5555689999999999999775 44444555443333    56899999999999753210  01222334445678899


Q ss_pred             EEcccCCcccHHHHH
Q psy2792          86 EVSVADNSPAIYQAF  100 (173)
Q Consensus        86 e~Sak~g~~~v~~lf  100 (173)
                      .+||+++. |+++++
T Consensus       155 ~~sa~~~~-g~~~L~  168 (307)
T 1t9h_A          155 LTSSKDQD-SLADII  168 (307)
T ss_dssp             ECCHHHHT-TCTTTG
T ss_pred             EEecCCCC-CHHHHH
Confidence            99999887 766555

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.48  E-value=6.4e-08  Score=73.92  Aligned_cols=82  Identities=7%  Similarity=-0.059  Sum_probs=59.0

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHH--HHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDY--AVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHE   86 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~--~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e   86 (173)
                      .....+.++|++|+|+|+.++.+..+  +. |+          +.|.++|+||+||.+...  .+....+.+..|+.+ .
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll----------~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~   79 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS----------RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-I   79 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT----------TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-E
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc----------CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-E
Confidence            34567899999999999999876532  12 21          589999999999965211  112233444557778 9


Q ss_pred             EcccCCcccHHHHHHHHHH
Q psy2792          87 VSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~~  105 (173)
                      +||+++. |+++++..+..
T Consensus        80 iSa~~~~-gi~~L~~~l~~   97 (262)
T 3cnl_A           80 TTHKGEP-RKVLLKKLSFD   97 (262)
T ss_dssp             ECCTTSC-HHHHHHHHCCC
T ss_pred             EECCCCc-CHHHHHHHHHH
Confidence            9999999 99999877654

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.44  E-value=3.6e-07  Score=72.17  Aligned_cols=96  Identities=15%  Similarity=0.115  Sum_probs=57.6

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH--HHHHHHhhh
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE--SLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~--~~~~~~~~~   79 (173)
                      |+|..+. .......+|++|+|+|.+..+.+..+..   ..      .++|.++|+||+|+.....+..  ++.......
T Consensus       156 TpG~~~~-~~~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~------~~~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~  225 (341)
T 2p67_A          156 TVGVGQS-ETEVARMVDCFISLQIAGGGDDLQGIKK---GL------MEVADLIVINKDDGDNHTNVAIARHMYESALHI  225 (341)
T ss_dssp             EECCTTH-HHHHHTTCSEEEEEECC------CCCCH---HH------HHHCSEEEECCCCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccch-HHHHHHhCCEEEEEEeCCccHHHHHHHH---hh------hcccCEEEEECCCCCChHHHHHHHHHHHHHHHh
Confidence            6776543 2235689999999999976533221111   11      1368899999999864221111  011111111


Q ss_pred             -------cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 -------YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 -------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                             +...++++||++|. |+++++++|.+.+.
T Consensus       226 ~~~~~~~~~~~vi~iSA~~g~-gi~~L~~~l~~~~~  260 (341)
T 2p67_A          226 LRRKYDEWQPRVLTCSALEKR-GIDEIWHAIIDFKT  260 (341)
T ss_dssp             SCCSBTTBCCEEEECBGGGTB-SHHHHHHHHHHHHH
T ss_pred             ccccccCCCCcEEEeeCCCCC-CHHHHHHHHHHHHH
Confidence                   13568999999999 99999999988765

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=98.39  E-value=4.4e-07  Score=68.98  Aligned_cols=68  Identities=13%  Similarity=0.018  Sum_probs=46.5

Q ss_pred             CCCCCCc--cHhhhcc---------cCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccC
Q psy2792           2 TIGLTEG--TLTAMIC---------WADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQV   68 (173)
Q Consensus         2 TaG~e~~--~~~~y~~---------~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v   68 (173)
                      |||++++  ....|++         ++|++|+|+|++... +... ..|+..+...... ...|+++|+||+|+...+..
T Consensus        91 TpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~  169 (262)
T 3def_A           91 TPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDEL  169 (262)
T ss_dssp             CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTC
T ss_pred             CCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCc
Confidence            8999873  4444443         899999999998754 4433 4677777765521 12499999999999644444


Q ss_pred             CH
Q psy2792          69 DE   70 (173)
Q Consensus        69 ~~   70 (173)
                      ..
T Consensus       170 ~~  171 (262)
T 3def_A          170 SY  171 (262)
T ss_dssp             CH
T ss_pred             cH
Confidence            33

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.37  E-value=1.7e-06  Score=68.63  Aligned_cols=95  Identities=9%  Similarity=0.115  Sum_probs=55.2

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh---
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV---   78 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~---   78 (173)
                      |+|.... .......+|++++|+|.++......+..   .+      -+.|.++|+||+|+.+.... ......+..   
T Consensus       174 T~Gi~~~-~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i------l~~~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~  242 (349)
T 2www_A          174 TVGVGQS-EFAVADMVDMFVLLLPPAGGDELQGIKR---GI------IEMADLVAVTKSDGDLIVPA-RRIQAEYVSALK  242 (349)
T ss_dssp             CCCC--C-HHHHHTTCSEEEEEECCC---------------------CCSCSEEEECCCSGGGHHHH-HHHHHHHHHHHT
T ss_pred             CCCcchh-hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH------HhcCCEEEEeeecCCCchhH-HHHHHHHHHHHH
Confidence            6665322 2334678999999999987543222211   11      23678999999998532110 001111211   


Q ss_pred             -------hcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          79 -------KYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        79 -------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                             .++.+++.+||++|. |+++++++|.+.+.
T Consensus       243 ~~~~~a~~~~~~vi~iSA~~g~-Gi~~L~~~I~~~~~  278 (349)
T 2www_A          243 LLRKRSQVWKPKVIRISARSGE-GISEMWDKMKDFQD  278 (349)
T ss_dssp             TCC-----CCCEEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred             hcCccccCCCceEEEEecCCCC-CHHHHHHHHHHHHH
Confidence                   124568999999999 99999999988664

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.35  E-value=4.3e-08  Score=77.80  Aligned_cols=92  Identities=12%  Similarity=0.033  Sum_probs=54.3

Q ss_pred             cHhhhcccCcEEEE-EEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH--HhhhcC-CeE
Q psy2792           9 TLTAMICWADGCII-VYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS--TAVKYN-CTF   84 (173)
Q Consensus         9 ~~~~y~~~ad~iil-v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~--~~~~~~-~~~   84 (173)
                      +...|+.+++.+|+ |.|.+....-.....++..+.    ..+.|+++|+||+|+.+...........  +....+ ..+
T Consensus       159 ~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~----~~~~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v  234 (353)
T 2x2e_A          159 MLMQFVTKENCLILAVSPANSDLANSDALKVAKEVD----PQGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV  234 (353)
T ss_dssp             HHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHC----TTCTTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEEC
T ss_pred             HHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhC----cCCCceEEEeccccccCcchhHHHHHhCCcccccCCceEE
Confidence            56678877766555 455543211111112333332    3568999999999997543311221111  111123 246


Q ss_pred             EEEcccCCcccHHHHHHHHHH
Q psy2792          85 HEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        85 ~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      +++||+++. |++++|+.+..
T Consensus       235 ~~~SA~~~~-~i~~l~~~l~~  254 (353)
T 2x2e_A          235 VNRSQKDID-GKKDITAALAA  254 (353)
T ss_dssp             CCCCHHHHH-TTCCHHHHHHH
T ss_pred             EeCCccccc-ccccHHHHHHH
Confidence            889999999 99999999876

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.26  E-value=2.5e-06  Score=67.80  Aligned_cols=84  Identities=18%  Similarity=0.109  Sum_probs=56.5

Q ss_pred             cccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC-HHHHHHHhhhcCCeEEEEcccC
Q psy2792          14 ICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD-ESLGRSTAVKYNCTFHEVSVAD   91 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~-~~~~~~~~~~~~~~~~e~Sak~   91 (173)
                      ..++|.+++|.+. +|. +...+..|+.....    .++|.+||.||+||.+..... .+.........|+.++.+||++
T Consensus       128 ~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~----~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          128 AANIDQIVIVSAI-LPELSLNIIDRYLVGCET----LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EECCCEEEEEEES-TTTCCHHHHHHHHHHHHH----HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh----cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            6899999999776 454 45555666554443    357889999999996432100 0112223345688899999999


Q ss_pred             CcccHHHHHHHH
Q psy2792          92 NSPAIYQAFDHL  103 (173)
Q Consensus        92 g~~~v~~lf~~l  103 (173)
                      +. |++++...+
T Consensus       203 ~~-gl~~L~~~~  213 (358)
T 2rcn_A          203 QD-GLKPLEEAL  213 (358)
T ss_dssp             TB-THHHHHHHH
T ss_pred             Cc-CHHHHHHhc
Confidence            99 999887543

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.12  E-value=4.4e-06  Score=63.58  Aligned_cols=67  Identities=13%  Similarity=0.019  Sum_probs=44.8

Q ss_pred             CCCCCCc--cHh-------hh--cccCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCC--CcEEEEEeCCCCCCCcc
Q psy2792           2 TIGLTEG--TLT-------AM--ICWADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNN--VPVMLLANKLDLEHLRQ   67 (173)
Q Consensus         2 TaG~e~~--~~~-------~y--~~~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~--~piilv~NK~Dl~~~~~   67 (173)
                      |||+++.  +..       .|  +.++|++|||||++.. ++... ..|+..+....+ .+  .|+++|+||+|+...+.
T Consensus        94 TpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~-~~~~~~iivV~nK~Dl~~~~~  171 (270)
T 1h65_A           94 TPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFG-KGIWNKAIVALTHAQFSPPDG  171 (270)
T ss_dssp             CCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHC-GGGGGGEEEEEECCSCCCGGG
T ss_pred             CCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhC-cccccCEEEEEECcccCCcCC
Confidence            8898762  211       12  3579999999999764 34433 468877776542 22  69999999999975444


Q ss_pred             CCH
Q psy2792          68 VDE   70 (173)
Q Consensus        68 v~~   70 (173)
                      ++.
T Consensus       172 ~~~  174 (270)
T 1h65_A          172 LPY  174 (270)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            333

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.08  E-value=1.2e-06  Score=73.45  Aligned_cols=53  Identities=17%  Similarity=0.142  Sum_probs=41.4

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCC
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHL   65 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~   65 (173)
                      ....|+..+|++|+|+|+++....+....|+..+..    .+.|+++|+||+|+...
T Consensus       181 ~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~----~~~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          181 VLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG----HEDKIRVVLNKADMVET  233 (550)
T ss_dssp             HHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT----CGGGEEEEEECGGGSCH
T ss_pred             HHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh----cCCCEEEEEECCCccCH
Confidence            455689999999999999886555666677766654    34799999999998653

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.06  E-value=3e-06  Score=74.39  Aligned_cols=57  Identities=21%  Similarity=0.272  Sum_probs=47.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |||++++  .+..+++.+|++|+|||+++..+++....|.... .    .++|+++|+||+|+.
T Consensus       105 TPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~----~~~p~ilviNK~D~~  163 (842)
T 1n0u_A          105 SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G----ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H----TTCEEEEEEECHHHH
T ss_pred             CcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H----cCCCeEEEEECCCcc
Confidence            8999985  7788999999999999999987887766665433 2    468999999999985

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.02  E-value=1.2e-05  Score=63.49  Aligned_cols=96  Identities=10%  Similarity=0.080  Sum_probs=55.5

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh--
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK--   79 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~--   79 (173)
                      |+|..+.- ......+|.+++|+|....+..+.+..+   +.      +++.++|.||+|+.............+...  
T Consensus       155 T~Gi~~~~-~~v~~~~d~vl~v~d~~~~~~~~~i~~~---i~------~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~  224 (337)
T 2qm8_A          155 TVGVGQSE-TAVADLTDFFLVLMLPGAGDELQGIKKG---IF------ELADMIAVNKADDGDGERRASAAASEYRAALH  224 (337)
T ss_dssp             ECSSSSCH-HHHHTTSSEEEEEECSCC------CCTT---HH------HHCSEEEEECCSTTCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCCcch-hhHHhhCCEEEEEEcCCCcccHHHHHHH---Hh------ccccEEEEEchhccCchhHHHHHHHHHHHHHH
Confidence            66765431 1235789999999998654322211111   11      245677789999743221111122222211  


Q ss_pred             --------cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 --------YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 --------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                              +..+++.+||+++. |++++++.|.+...
T Consensus       225 l~~~~~~~~~~~vl~~Sal~g~-gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          225 ILTPPSATWTPPVVTISGLHGK-GLDSLWSRIEDHRS  260 (337)
T ss_dssp             TBCCSBTTBCCCEEEEBTTTTB-SHHHHHHHHHHHHH
T ss_pred             hccccccCCCCCEEEEeCCCCC-CHHHHHHHHHHHHH
Confidence                    13468899999999 99999999987654

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.01  E-value=1.5e-05  Score=63.56  Aligned_cols=52  Identities=15%  Similarity=0.072  Sum_probs=36.8

Q ss_pred             CCcEEEEEeCCCC--CCC-ccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHH
Q psy2792          50 NVPVMLLANKLDL--EHL-RQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDH  102 (173)
Q Consensus        50 ~~piilv~NK~Dl--~~~-~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~  102 (173)
                      ..|+++|+||.|.  .+. .....+....++...+..++++||+.+. ++.+++..
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~-el~eL~~~  255 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEA-ELAELSGE  255 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHH-HHHTSCHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHH-HHHHhchH
Confidence            3799999999984  221 1223455677888788999999999876 66655543

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.00  E-value=6.3e-05  Score=59.87  Aligned_cols=42  Identities=21%  Similarity=0.027  Sum_probs=30.6

Q ss_pred             CCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccC
Q psy2792          50 NVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVAD   91 (173)
Q Consensus        50 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~   91 (173)
                      ..|+++|+||.|..-......+....++...+..++.+||+.
T Consensus       199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            489999999999642112224556677777788999999875

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=97.99  E-value=4.8e-05  Score=63.72  Aligned_cols=57  Identities=19%  Similarity=0.185  Sum_probs=40.7

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|..++.  ...-++-+|++|+|+|...----.....| ..+.+    .++|+|++.||+|..
T Consensus       107 TPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~-~~a~~----~~lp~i~fINK~Dr~  165 (548)
T 3vqt_A          107 TPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLM-DVCRM----RATPVMTFVNKMDRE  165 (548)
T ss_dssp             CCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHH-HHHHH----TTCCEEEEEECTTSC
T ss_pred             CCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHH-HHHHH----hCCceEEEEecccch
Confidence            88988863  34458899999999999874222333345 33344    459999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=97.96  E-value=2.6e-06  Score=73.72  Aligned_cols=100  Identities=12%  Similarity=-0.008  Sum_probs=61.8

Q ss_pred             cHhhhc-ccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-H-hhhcC-CeE
Q psy2792           9 TLTAMI-CWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-T-AVKYN-CTF   84 (173)
Q Consensus         9 ~~~~y~-~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-~-~~~~~-~~~   84 (173)
                      +...|+ ..+|++++|+|.+....-.+...++..+..    .+.|+|+|.||+|+.+........... . ....+ ..+
T Consensus       179 lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~----~g~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~V  254 (772)
T 3zvr_A          179 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGV  254 (772)
T ss_dssp             HHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCT----TCSSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEEC
T ss_pred             HHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHh----cCCCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCce
Confidence            344555 578999999999864322222223333332    468999999999997544332221110 0 00123 246


Q ss_pred             EEEcccCCcccHHHHHHHHHHH---HhcCCCC
Q psy2792          85 HEVSVADNSPAIYQAFDHLLTE---SRGGPPS  113 (173)
Q Consensus        85 ~e~Sak~g~~~v~~lf~~l~~~---i~~~~~~  113 (173)
                      +.+||++|. |++++++.+...   +.+.+.+
T Consensus       255 V~iSA~~G~-GvdeL~eaI~~e~~ffpe~P~y  285 (772)
T 3zvr_A          255 VNRSQKDID-GKKDITAALAAERKFFLSHPSY  285 (772)
T ss_dssp             CCCCCEESS-SSEEHHHHHHHHHHHHHHCTTT
T ss_pred             EEecccccc-cchhHHHHHHHHHHhccCCcch
Confidence            789999999 999999999873   5455443

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=97.60  E-value=8.8e-05  Score=63.22  Aligned_cols=57  Identities=21%  Similarity=0.289  Sum_probs=39.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|..++  -...-++-+|++|+|+|...--.-.....|. .+..+    ++|.|++.||+|..
T Consensus        74 TPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~-~a~~~----~lp~i~~INKmDr~  132 (638)
T 3j25_A           74 TPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFH-ALRKM----GIPTIFFINKIDQN  132 (638)
T ss_dssp             CCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHH-HHHHH----TCSCEECCEECCSS
T ss_pred             CCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHH-HHHHc----CCCeEEEEeccccc
Confidence            8999886  3445588999999999998632112223343 33333    48999999999974

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=97.23  E-value=0.0027  Score=54.73  Aligned_cols=57  Identities=21%  Similarity=0.237  Sum_probs=39.3

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|.-++.  ...-++=+|++|+|+|+..--.-.....|.. +.+    .++|.|+|.||+|..
T Consensus        92 TPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~----~~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           92 TPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANK----YGVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH----HTCCEEEEEECSSST
T ss_pred             CCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHH----cCCCeEEEEcccccc
Confidence            78888863  3445889999999999986322222233433 333    359999999999974

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=95.88  E-value=0.044  Score=43.68  Aligned_cols=68  Identities=15%  Similarity=0.116  Sum_probs=41.1

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCC--------CccCCHHHHHHHhhhcC
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEH--------LRQVDESLGRSTAVKYN   81 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~--------~~~v~~~~~~~~~~~~~   81 (173)
                      ..+++||++++|+|.+++.  .+......++..... ....|.+++.||.|...        ....+.++...+...+.
T Consensus       145 ~~i~~ad~il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~  221 (376)
T 4a9a_A          145 AVARTCNLLFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYR  221 (376)
T ss_dssp             HHHHHCSEEEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTT
T ss_pred             HHHHhcCccccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhc
Confidence            3578999999999999873  333333333333210 13568889999999632        12344555555555444

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=91.33  E-value=0.082  Score=43.76  Aligned_cols=78  Identities=14%  Similarity=0.032  Sum_probs=47.3

Q ss_pred             cCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcE-EEEEeCCCCCCCccCCHHHHHHHhhhcCCe-----------
Q psy2792          16 WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPV-MLLANKLDLEHLRQVDESLGRSTAVKYNCT-----------   83 (173)
Q Consensus        16 ~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~-----------   83 (173)
                      .+|.+++|+|.+.....  + .....+.+     .+|+ ++|.||+|......    .+.......+.+           
T Consensus       213 ~pd~vllVvDa~~g~~~--~-~~a~~~~~-----~~~i~gvVlNK~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~  280 (504)
T 2j37_W          213 QPDNIVYVMDASIGQAC--E-AQAKAFKD-----KVDVASVIVTKLDGHAKGG----GALSAVAATKSPIIFIGTGEHID  280 (504)
T ss_dssp             CCSEEEEEEETTCCTTH--H-HHHHHHHH-----HHCCCCEEEECTTSCCCCT----HHHHHHHHHCCCEEEEECSSSTT
T ss_pred             cCceEEEEEeccccccH--H-HHHHHHHh-----hcCceEEEEeCCccccchH----HHHHHHHHhCCCeEEeccccchh
Confidence            78999999999774321  1 11222322     1564 88999999753211    112222222322           


Q ss_pred             -------EEEEcccCCccc-HHHHHHHHHHH
Q psy2792          84 -------FHEVSVADNSPA-IYQAFDHLLTE  106 (173)
Q Consensus        84 -------~~e~Sak~g~~~-v~~lf~~l~~~  106 (173)
                             .+.+|+..|. | +.++++++.+.
T Consensus       281 dl~~f~~~~~vsal~G~-Gdi~~Lie~i~e~  310 (504)
T 2j37_W          281 DFEPFKTQPFISKLLGM-GDIEGLIDKVNEL  310 (504)
T ss_dssp             CEECCTHHHHHHCCCTT-TTTTTTHHHHTTT
T ss_pred             hhhccCcceeeehhcCC-CcHHHHHHHHHHH
Confidence                   2347899999 8 99999988765

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=89.91  E-value=0.65  Score=32.66  Aligned_cols=72  Identities=11%  Similarity=-0.002  Sum_probs=44.8

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH   85 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~   85 (173)
                      .....+..+|.+|++...+.. + ..+..+++.+.+... .+++++.+|.|++|-..  .. ..+..++.+.++..++
T Consensus        90 ~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~~~~~~l~~~~~~vl  162 (206)
T 4dzz_A           90 ITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LNVLKESIKDTGVKAF  162 (206)
T ss_dssp             HHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EHHHHHHHHHHTCCBC
T ss_pred             HHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HHHHHHHHHHcCCcee
Confidence            455667789999999987654 4 566666666655421 14577899999999532  11 2334444455555444

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=89.77  E-value=1.9  Score=30.78  Aligned_cols=72  Identities=17%  Similarity=0.071  Sum_probs=46.1

Q ss_pred             ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEE
Q psy2792           8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFH   85 (173)
Q Consensus         8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~   85 (173)
                      ......+..+|.+|++...+ ..++..+...++.+....   +.++.+|.|++|-... . ...+..+..++.+..++
T Consensus        82 ~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~---~~~~~vv~N~~~~~~~-~-~~~~~~~~l~~~g~~v~  153 (209)
T 3cwq_A           82 EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG---NNRFRILLTIIPPYPS-K-DGDEARQLLTTAGLPLF  153 (209)
T ss_dssp             SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC---SSSEEEEECSBCCTTS-C-HHHHHHHHHHHTTCCBC
T ss_pred             HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc---CCCEEEEEEecCCccc-h-HHHHHHHHHHHcCCchh
Confidence            34556778899999999864 456777777776666532   4678899999985320 1 13344444444565544

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=88.49  E-value=0.19  Score=40.32  Aligned_cols=31  Identities=19%  Similarity=0.378  Sum_probs=18.1

Q ss_pred             CCCCCCc---------cHhhhcccCcEEEEEEeCCChhhH
Q psy2792           2 TIGLTEG---------TLTAMICWADGCIIVYSLIDKESF   32 (173)
Q Consensus         2 TaG~e~~---------~~~~y~~~ad~iilv~d~~~~~s~   32 (173)
                      |||+.++         ....+++++|++++|+|+++.+++
T Consensus        93 tpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i  132 (396)
T 2ohf_A           93 IAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDI  132 (396)
T ss_dssp             CCC-----------CCHHHHHHHTSSSEEEEEEC------
T ss_pred             CCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence            7888762         345789999999999999875443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=83.07  E-value=3.4  Score=33.52  Aligned_cols=65  Identities=9%  Similarity=-0.004  Sum_probs=38.0

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV   89 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa   89 (173)
                      ...+|.+++|.|.+....-   ......+.+..    .+..+|.||.|....    ...+.......+.++..++.
T Consensus       210 ~~~pd~vlLVvDA~~gq~a---~~~a~~f~~~~----~i~gVIlTKlD~~~~----gG~~ls~~~~~g~PI~fig~  274 (443)
T 3dm5_A          210 VIHPHEVILVIDGTIGQQA---YNQALAFKEAT----PIGSIIVTKLDGSAK----GGGALSAVAATGAPIKFIGT  274 (443)
T ss_dssp             HHCCSEEEEEEEGGGGGGH---HHHHHHHHHSC----TTEEEEEECCSSCSS----HHHHHHHHHTTCCCEEEEEC
T ss_pred             hhcCceEEEEEeCCCchhH---HHHHHHHHhhC----CCeEEEEECCCCccc----ccHHHHHHHHHCCCEEEEEc
Confidence            3468999999998764322   12223333321    345689999997531    33444555566777665554

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=82.48  E-value=11  Score=26.89  Aligned_cols=72  Identities=11%  Similarity=0.027  Sum_probs=47.6

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEV   87 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~   87 (173)
                      .....+..+|.+|+|...+ ..++..+..+++.+.... .+...+.+|.|++|-..  ....+   .+.+.++..++.+
T Consensus       133 ~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~-~~~~~~~~v~N~~~~~~--~~~~~---~~~~~~~~~v~~~  204 (245)
T 3ea0_A          133 VGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFE-KPISRIEIILNRADTNS--RITSD---EIEKVIGRPISKR  204 (245)
T ss_dssp             THHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCS-SCCSCEEEEEESTTSCT--TSCHH---HHHHHHTSCEEEE
T ss_pred             HHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhC-CCccceEEEEecCCCCC--CCCHH---HHHHHhCCCeEEE
Confidence            4556688899999999864 567777777777776543 23456789999998542  23333   3334456665544

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=81.73  E-value=4.9  Score=31.83  Aligned_cols=52  Identities=10%  Similarity=0.011  Sum_probs=38.0

Q ss_pred             CCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          49 NNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        49 ~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ...|.++|.||+|..     ..++...+...  -.++.+|+..+. |++.|...+.+.+-
T Consensus       248 ~~~p~i~v~nKid~~-----~~eele~l~~~--~~~~~is~~~e~-gLd~Li~~~y~~L~  299 (376)
T 4a9a_A          248 RYMPAIYVLNKIDSL-----SIEELELLYRI--PNAVPISSGQDW-NLDELLQVMWDRLN  299 (376)
T ss_dssp             EEECEEEEEECGGGS-----CHHHHHHHTTS--TTEEECCTTTCT-THHHHHHHHHHHHC
T ss_pred             hccceEEEEeccccc-----CHHHHHHHhcc--cchhhhhhhhcc-cchhHHHHHHHHcC
Confidence            457999999999964     24444443322  247899999999 99999888877664

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=81.08  E-value=3  Score=31.74  Aligned_cols=71  Identities=11%  Similarity=0.033  Sum_probs=42.7

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN   92 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g   92 (173)
                      ...+|.+++|.|.+...   +.......+..     .++ ..+|.||.|...    ....+..++...+.++..++  .|
T Consensus       210 ~~~~d~vllVvda~~g~---~~~~~~~~~~~-----~~~i~gvVlnk~D~~~----~~g~~~~~~~~~~~pi~~i~--~G  275 (297)
T 1j8m_F          210 AIKPDEVTLVIDASIGQ---KAYDLASKFNQ-----ASKIGTIIITKMDGTA----KGGGALSAVAATGATIKFIG--TG  275 (297)
T ss_dssp             HHCCSEEEEEEEGGGGG---GHHHHHHHHHH-----TCTTEEEEEECGGGCT----THHHHHHHHHTTTCCEEEEE--CS
T ss_pred             HhcCCEEEEEeeCCchH---HHHHHHHHHHh-----hCCCCEEEEeCCCCCc----chHHHHHHHHHHCcCEEEEe--CC
Confidence            45799999999986432   11122222222     255 678999999642    23345566777787776665  56


Q ss_pred             cccHHHH
Q psy2792          93 SPAIYQA   99 (173)
Q Consensus        93 ~~~v~~l   99 (173)
                      + +++++
T Consensus       276 e-~v~dl  281 (297)
T 1j8m_F          276 E-KIDEL  281 (297)
T ss_dssp             S-STTCE
T ss_pred             C-Chhhc
Confidence            5 66543

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=80.02  E-value=4.2  Score=29.88  Aligned_cols=50  Identities=16%  Similarity=0.130  Sum_probs=36.6

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCC
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLD   61 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~D   61 (173)
                      .....+..||.+|++...+ ..+...+...++.+....  .+.++.+|.|+++
T Consensus       159 ~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~--~~~~~~vv~N~~~  208 (267)
T 3k9g_A          159 TLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN--LFLPIFLIITRFK  208 (267)
T ss_dssp             HHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT--CCCCEEEEEEEEC
T ss_pred             HHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh--ccCCEEEEEeccc
Confidence            4455667799999999874 456676766776666654  4578889999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	8e-12
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-11
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	3e-10
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	6e-10
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-09
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-09
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-09
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	4e-08
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-08
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-08
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-07
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	6e-07
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-06
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-06
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	3e-06
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	4e-06
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-06
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-05
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	3e-05
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	7e-05
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	9e-05
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	9e-04
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	9e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	0.001
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	0.001
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	0.002
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	0.003

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (140), Expect = 8e-12
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 2/93 (2%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
              A G ++VY +  +E+F++  S L++ ++H + +N+ +ML+ NK DLE  R V    G
Sbjct: 73  YRGAAGALLVYDITRRETFNHLTSWLEDARQHSS-SNMVIMLIGNKSDLESRRDVKREEG 131

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            + A ++   F E S       + +AF +   E
Sbjct: 132 EAFAREHGLIFMETSAKTAC-NVEEAFINTAKE 163

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (134), Expect = 6e-11
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 2/94 (2%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
               A G ++VY +    +++     L+ L+ H A +N+ +ML+ NK DL HLR V    
Sbjct: 73  YYRGAVGALLVYDIAKHLTYENVERWLKELRDH-ADSNIVIMLVGNKSDLRHLRAVPTDE 131

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            R+ A K N +F E S  D++  + +AF ++LTE
Sbjct: 132 ARAFAEKNNLSFIETSALDST-NVEEAFKNILTE 164

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 3e-10
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
           I    G I+VYSL++++SF         + R +    VPV+L+ NK+DLE  R+V  S G
Sbjct: 72  IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEG 131

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           R+ A ++ C F E S    +  + + F  ++ +
Sbjct: 132 RALAEEWGCPFMETSAKSKT-MVDELFAEIVRQ 163

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.1 bits (126), Expect = 6e-10
 Identities = 33/95 (34%), Positives = 51/95 (53%)

Query: 12  AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71
             +   DG +IVYS+ DK SF++     Q + R +   + P++L+ANK+DL HLR+V   
Sbjct: 71  QYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 130

Query: 72  LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            G+  A KYN  + E S  D    + + F  L+  
Sbjct: 131 QGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRV 165

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 1e-09
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
               A G ++VY +  + ++++  S L +  R+    N  ++L+ NK DLE  R V    
Sbjct: 73  YYRGAAGALMVYDITRRSTYNHLSSWLTDA-RNLTNPNTVIILIGNKADLEAQRDVTYEE 131

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            +  A +    F E S       +  AF     +
Sbjct: 132 AKQFAEENGLLFLEASAKTGE-NVEDAFLEAAKK 164

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 52.2 bits (124), Expect = 1e-09
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 1/96 (1%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
                +G + V+S+ + ESF       + + R +   NVP +L+ NK DLE  RQV    
Sbjct: 72  YFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEE 131

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
            ++ A ++N  + E S    +  + + F  L+ E R
Sbjct: 132 AKNRADQWNVNYVETSAKTRA-NVDKVFFDLMREIR 166

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (122), Expect = 3e-09
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 2/91 (2%)

Query: 16  WADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS 75
            A G ++VY + +++SFD   + ++N+    A  +V  M+L NK D+   RQV +  G  
Sbjct: 78  GAMGIMLVYDITNEKSFDNIRNWIRNI-EEHASADVEKMILGNKCDVNDKRQVSKERGEK 136

Query: 76  TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            A+ Y   F E S   N   +  AF  L  +
Sbjct: 137 LALDYGIKFMETSAKANI-NVENAFFTLARD 166

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 4e-08
 Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 2/92 (2%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
                  + VY + +  SF    + ++  ++H   N++P +L+ NK DL    QV   L 
Sbjct: 73  YRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLA 132

Query: 74  RSTAVKYNCTFHEVSV--ADNSPAIYQAFDHL 103
           +  A  ++    E S    +++  +   F  L
Sbjct: 133 QKFADTHSMPLFETSAKNPNDNDHVEAIFMTL 164

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (114), Expect = 4e-08
 Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 17  ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST 76
           A G ++++ L  ++SF    + +  LQ +    N  ++L+ NK DL   R+V+E   R  
Sbjct: 88  AMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQAREL 147

Query: 77  AVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           A KY   + E S A     + +A + LL  
Sbjct: 148 ADKYGIPYFETSAATGQ-NVEKAVETLLDL 176

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 5e-08
 Identities = 21/94 (22%), Positives = 44/94 (46%), Gaps = 2/94 (2%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
            +   +G + V+++ + +SF+      + ++R +  ++VP++L+ NK D    R V+   
Sbjct: 71  YMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCD-LAARTVESRQ 129

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            +  A  Y   + E S       +  AF  L+ E
Sbjct: 130 AQDLARSYGIPYIETSAKTRQ-GVEDAFYTLVRE 162

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 5e-07
 Identities = 29/95 (30%), Positives = 45/95 (47%)

Query: 12  AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES 71
             + W +G ++VY + D+ SF+  +     L   +   NV ++L+ NK DL+H RQV   
Sbjct: 68  GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE 127

Query: 72  LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            G   A +  C F+E S       I + F  L  E
Sbjct: 128 EGEKLATELACAFYECSACTGEGNITEIFYELCRE 162

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 6e-07
 Identities = 24/108 (22%), Positives = 50/108 (46%), Gaps = 9/108 (8%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
            +    G ++V+++ D++SF+        + R +  ++ PV+L+ NK DLE  RQV  S 
Sbjct: 74  YMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSE 133

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRK 120
             +    ++  + E S       + +AF+ L+          + K ++
Sbjct: 134 ASAFGASHHVAYFEASAKLRL-NVDEAFEQLVRA--------VRKYQE 172

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
               ++G I+VY + D++SF    + ++   R    N + + ++ NK+DLE  R V    
Sbjct: 72  YYRDSNGAILVYDITDEDSFQKVKNWVKE-LRKMLGNEICLCIVGNKIDLEKERHVSIQE 130

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
             S A       +  S   N   I + F  L   
Sbjct: 131 AESYAESVGAKHYHTSAKQNK-GIEELFLDLCKR 163

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 28/108 (25%), Positives = 52/108 (48%), Gaps = 9/108 (8%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
            +   +G ++V+S+ D+ SF+      + + R +  +  P++L+ NK DL+H RQV +  
Sbjct: 73  YMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEE 132

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIHKIRK 120
           G+  A +   T+ E S       + QAF  L+          I K ++
Sbjct: 133 GQQLARQLKVTYMEASAKIRM-NVDQAFHELVRV--------IRKFQE 171

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 3e-06
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
           I  +   ++VY + +  SF      + +++  R  ++V +ML+ NK DL   RQV    G
Sbjct: 70  IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG-SDVIIMLVGNKTDLADKRQVSIEEG 128

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
              A + N  F E S       + Q F  +   
Sbjct: 129 ERKAKELNVMFIETSAKAGY-NVKQLFRRVAAA 160

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 2/97 (2%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDES 71
            I      I+VYS+  ++S +      + +   +  V ++P+ML+ NK D    R+V  S
Sbjct: 70  SISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS 129

Query: 72  LGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
              + A  + C F E S   N   + + F  LL   +
Sbjct: 130 EAEALARTWKCAFMETSAKLNH-NVKELFQELLNLEK 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 4/97 (4%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKL---DLEHLRQVD 69
                 G I V    D+E  + A   L  +     + +  +++ ANK    +  +  ++ 
Sbjct: 64  YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEIT 123

Query: 70  ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           + LG  +    N        A +   +Y+  D L  +
Sbjct: 124 DKLGLHSLRHRNWYIQATC-ATSGDGLYEGLDWLSNQ 159

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
              A G I+VY + D+ +F   +          A +   ++L+ NK D+E  R V    G
Sbjct: 72  YRGAMGIILVYDITDERTFT-NIKQWFKTVNEHANDEAQLLLVGNKSDMET-RVVTADQG 129

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            + A +    F E S  ++   + + F  L   
Sbjct: 130 EALAKELGIPFIESSAKNDD-NVNEIFFTLAKL 161

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 26/93 (27%), Positives = 47/93 (50%), Gaps = 2/93 (2%)

Query: 14  ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG 73
              A G I+VY +  +++F    + L  L+ +   N++  ML+ NK+D +  R+VD + G
Sbjct: 77  YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKID-KENREVDRNEG 135

Query: 74  RSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
              A K++  F E S       +  AF+ L+ +
Sbjct: 136 LKFARKHSMLFIEASAKTCD-GVQCAFEELVEK 167

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 7e-05
 Identities = 17/106 (16%), Positives = 31/106 (29%), Gaps = 14/106 (13%)

Query: 20  CIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES-------- 71
             ++   +   +    V      +      N P++L+  KLDL   +   E         
Sbjct: 79  VSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTP 138

Query: 72  ----LGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPP 112
                G + A +     + E S       +   FD  +      PP
Sbjct: 139 ITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAVLCPPP 183

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 9e-05
 Identities = 18/97 (18%), Positives = 39/97 (40%), Gaps = 4/97 (4%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVN---NVPVMLLANKLDLEHLRQVD 69
               +D C++ +S+ D +SF    +  +    +  V    + P ++L NK+D+   +   
Sbjct: 75  FYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVST 134

Query: 70  ESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           E          +  + E S  D +  +  AF+  +  
Sbjct: 135 EEAQAWCRDNGDYPYFETSAKDAT-NVAAAFEEAVRR 170

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (81), Expect = 9e-04
 Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
            +   D  +IVYS+ D+ SF+ A      L+R R   ++P++L+ NK DL   R+V  S 
Sbjct: 74  CMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSE 133

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           GR+ AV ++C F E S A     + + F+ ++ +
Sbjct: 134 GRACAVVFDCKFIETSAAVQH-NVKELFEGIVRQ 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 9e-04
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE--------- 63
               +D  +I + +   E+ D +V      +      N  ++L+  K DL          
Sbjct: 70  SYPDSDAVLICFDISRPETLD-SVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVEL 128

Query: 64  ---HLRQVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHL 103
                  V    G + A +    T+ E S   +  ++   F   
Sbjct: 129 SNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVA 172

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 43  QRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDH 102
              R   N+P++L  NK+D++  +   +S       K N  ++++S   N     + F  
Sbjct: 100 DLVRVCENIPIVLCGNKVDIKDRKVKAKS--IVFHRKKNLQYYDISAKSNY-NFEKPFLW 156

Query: 103 LLTE 106
           L  +
Sbjct: 157 LARK 160

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.6 bits (81), Expect = 0.001
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 11  TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE 70
           ++    + G IIVY + D+ESF+  V          A + V  +L+ NK DL+  R V+ 
Sbjct: 73  SSYYRGSHGIIIVYDVTDQESFN-GVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY 131

Query: 71  SLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
            + +  A      F E S  D++  +  AF  +  +
Sbjct: 132 DVAKEFADANKMPFLETSALDST-NVEDAFLTMARQ 166

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.002
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 1/96 (1%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
                +G I+VYS+   +SF+        L        +P+ML+ NK DL   R +    
Sbjct: 72  YSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEE 131

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESR 108
           G++ A  +N  F E S  +N       F  ++ E+ 
Sbjct: 132 GKALAESWNAAFLESSAKENQ-TAVDVFRRIILEAE 166

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 13  MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL 72
            +   D  +IVYS+ DK SF+ A      L+R R  ++VP++L+ NK DL   R+V    
Sbjct: 68  CMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE 127

Query: 73  GRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTE 106
           GR+ AV ++C F E S A +   +   F+ ++ +
Sbjct: 128 GRACAVVFDCKFIETSAALHH-NVQALFEGVVRQ 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.93
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.93
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.92
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.91
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.9
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.9
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.89
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.89
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.87
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.87
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.87
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.86
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.86
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.86
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.85
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.83
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.82
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.81
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.8
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.8
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.78
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.77
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.72
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.65
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.6
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.53
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.51
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.5
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.48
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.47
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.44
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.43
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.34
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.33
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.18
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.12
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.11
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.09
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.07
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.05
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.03
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.99
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.97
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	98.87
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	98.85
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.69
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.47
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.41
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.35
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	98.11
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	98.07
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.07
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.91
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	97.81
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	97.77
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	97.73
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.69
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	97.56
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.51
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	97.49
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.29
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	96.9
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.97
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	92.43
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	92.1
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	91.52
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	84.59
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	83.14
d1zpda1	175	Pyruvate decarboxylase {Zymomonas mobilis [TaxId:	81.54
d1eg7a_	549	Formyltetrahydrofolate synthetase {Moorella thermo	81.28

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.7e-26  Score=163.47  Aligned_cols=107  Identities=32%  Similarity=0.474  Sum_probs=94.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..||+++|++|+|||+++++||+.+..|+.++.......++|++|||||+|+.+.++++..++..++..
T Consensus        55 ~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~~~~  134 (168)
T d2gjsa1          55 IWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVV  134 (168)
T ss_dssp             CC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             cccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccceEEEeecccchhhhcchhHHHHHHHHHh
Confidence            7899884  89999999999999999999999999999999998776557799999999999998889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|+||||++|. ||+++|+.|++.+..
T Consensus       135 ~~~~~~e~Sak~~~-~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         135 FDCKFIETSAALHH-NVQALFEGVVRQIRL  163 (168)
T ss_dssp             HTSEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCc-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999988765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-26  Score=165.30  Aligned_cols=107  Identities=32%  Similarity=0.485  Sum_probs=99.1

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN   81 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~   81 (173)
                      |+|++++++..|++++|++|+|||+++++||+.+..|+.++.......++|++|||||+||.+.++++.+++..++..++
T Consensus        63 ~~g~e~~~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~  142 (172)
T d2g3ya1          63 NKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD  142 (172)
T ss_dssp             TTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHT
T ss_pred             ccccccccccccccccceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEeccccccccccccHHHHHHHHHHcC
Confidence            67888788899999999999999999999999999999988876545789999999999999888999999999999999


Q ss_pred             CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          82 CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        82 ~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +.|++|||++|. ||+++|..|++.+..
T Consensus       143 ~~~~e~Sak~g~-~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         143 CKFIETSAAVQH-NVKELFEGIVRQVRL  169 (172)
T ss_dssp             CEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCc-CHHHHHHHHHHHHHH
Confidence            999999999999 999999999998864

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-25  Score=158.40  Aligned_cols=106  Identities=26%  Similarity=0.349  Sum_probs=98.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..|++++|++|+|||+++++||+.+..|+..+.+.....++|++|||||+|+...+.|+.+++..++++
T Consensus        59 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~r~v~~~~~~~~a~~  138 (167)
T d1xtqa1          59 TAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES  138 (167)
T ss_dssp             CCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             cccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccccchhHHHHHHHHHH
Confidence            7888874  88999999999999999999999999999999998876567899999999999988889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +++.|+||||++|. ||+++|+.|+..+.
T Consensus       139 ~~~~~~e~Sak~~~-~v~~~f~~li~~~~  166 (167)
T d1xtqa1         139 WNAAFLESSAKENQ-TAVDVFRRIILEAE  166 (167)
T ss_dssp             HTCEEEECCTTCHH-HHHHHHHHHHHHHH
T ss_pred             cCCEEEEEecCCCC-CHHHHHHHHHHHhc
Confidence            99999999999999 99999999998764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.1e-25  Score=159.43  Aligned_cols=105  Identities=24%  Similarity=0.314  Sum_probs=98.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +...|++++|++++|||+++++||+.+..|++++.+..  +++|++|||||+|+.+.++++.+++..+++.
T Consensus        58 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~--~~~~iilVgnK~Dl~~~~~v~~~~~~~~~~~  135 (164)
T d1z2aa1          58 TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV--GDIPTALVQNKIDLLDDSCIKNEEAEGLAKR  135 (164)
T ss_dssp             CTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH--CSCCEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred             cCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC--CCceEEEeeccCCcccceeeeehhhHHHHHH
Confidence            7888884  88899999999999999999999999999999998877  6899999999999998889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|++|||++|. ||+++|++|++.+++
T Consensus       136 ~~~~~~e~Sak~g~-~v~e~f~~l~~~~lq  164 (164)
T d1z2aa1         136 LKLRFYRTSVKEDL-NVSEVFKYLAEKHLQ  164 (164)
T ss_dssp             HTCEEEECBTTTTB-SSHHHHHHHHHHHHC
T ss_pred             cCCEEEEeccCCCc-CHHHHHHHHHHHHhC
Confidence            99999999999999 999999999998864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=3.4e-25  Score=157.86  Aligned_cols=107  Identities=35%  Similarity=0.475  Sum_probs=99.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +++.|++++|++++|||++|++||+.+..|+.++.+.....++|+||||||+|+.+.+.++.+++..+++.
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~  138 (169)
T d1x1ra1          59 TAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATK  138 (169)
T ss_dssp             CCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSCHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhhceeehhhHHHHHHH
Confidence            6888874  88999999999999999999999999999999998876557899999999999998899999999999999


Q ss_pred             cCCeEEEEcccCC-cccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADN-SPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g-~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|+|||||++ . ||+++|..|++.+.+
T Consensus       139 ~~~~~~e~Sak~~~~-nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         139 YNIPYIETSAKDPPL-NVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             HTCCEEEEBCSSSCB-SHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCc-CHHHHHHHHHHHHHh
Confidence            9999999999986 6 999999999998875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.92  E-value=3.7e-25  Score=157.56  Aligned_cols=107  Identities=27%  Similarity=0.388  Sum_probs=97.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||+++++||+.+..|+.++.+.....++|++|||||+|+.+.+.++.+++..+++.
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiivgnK~Dl~~~~~v~~~~~~~~~~~  138 (168)
T d1u8za_          59 TAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ  138 (168)
T ss_dssp             CCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             cccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCCCCcEEEEeccccccccccccHHHHHHHHHH
Confidence            6888874  88999999999999999999999999999999998876567899999999999988889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|+||||++|. ||+++|++|++.+..
T Consensus       139 ~~~~~~e~Sak~g~-gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         139 WNVNYVETSAKTRA-NVDKVFFDLMREIRA  167 (168)
T ss_dssp             HTCEEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred             cCCeEEEEcCCCCc-CHHHHHHHHHHHHHC
Confidence            99999999999999 999999999998764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-25  Score=157.65  Aligned_cols=107  Identities=25%  Similarity=0.368  Sum_probs=99.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++.||+.+..|+..+.+.....++|+||||||+|+.+.+.+..+++..++..
T Consensus        61 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~  140 (173)
T d2fn4a1          61 TAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS  140 (173)
T ss_dssp             CCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             cccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhccccchhhhhHHHHh
Confidence            7899884  89999999999999999999999999999999988766557899999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.||+|||++|. ||+++|+.|++.+.+
T Consensus       141 ~~~~~~e~Sak~g~-gv~e~f~~l~~~i~k  169 (173)
T d2fn4a1         141 HHVAYFEASAKLRL-NVDEAFEQLVRAVRK  169 (173)
T ss_dssp             TTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCc-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998876

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.8e-25  Score=156.56  Aligned_cols=106  Identities=24%  Similarity=0.259  Sum_probs=94.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +++.|++++|++|+|||+++++||+.+..|+..+.... ....|++|||||+|+.+.+.|+.+++..+++.
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~-~~~~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~  137 (167)
T d1z08a1          59 TAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKML-GNEICLCIVGNKIDLEKERHVSIQEAESYAES  137 (167)
T ss_dssp             CCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHH-GGGSEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             cCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhccccc-ccccceeeeccccccccccccchHHHHHHHHH
Confidence            7888873  88999999999999999999999999999998877665 36789999999999998899999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|+||||++|. ||+++|.+|++.+++
T Consensus       138 ~~~~~~e~Sak~~~-~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         138 VGAKHYHTSAKQNK-GIEELFLDLCKRMIE  166 (167)
T ss_dssp             TTCEEEEEBTTTTB-SHHHHHHHHHHHHHC
T ss_pred             cCCeEEEEecCCCc-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999999876

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.2e-25  Score=155.49  Aligned_cols=107  Identities=25%  Similarity=0.381  Sum_probs=95.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC-CCCCcEEEEEeCCCCCCCccCCHHHHHHHhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA-VNNVPVMLLANKLDLEHLRQVDESLGRSTAV   78 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~   78 (173)
                      |+|++++  ++..|++++|++|+|||+++++||+.+..|+..+.+... ..++|++|||||+|+...++++.+++..+++
T Consensus        57 ~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~~~v~~~e~~~~~~  136 (171)
T d2erxa1          57 TTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALAR  136 (171)
T ss_dssp             CCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHH
T ss_pred             ccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeecccccccccccHHHHHHHHH
Confidence            7899884  888999999999999999999999999999988876542 3679999999999998888999999999999


Q ss_pred             hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          79 KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        79 ~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .+++.|+||||++|. ||+++|..|++.+.+
T Consensus       137 ~~~~~~~e~Sak~~~-~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         137 TWKCAFMETSAKLNH-NVKELFQELLNLEKR  166 (171)
T ss_dssp             HHTCEEEECBTTTTB-SHHHHHHHHHHTCCS
T ss_pred             HcCCeEEEEcCCCCc-CHHHHHHHHHHHHHH
Confidence            999999999999999 999999999976543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.3e-24  Score=152.20  Aligned_cols=106  Identities=25%  Similarity=0.411  Sum_probs=96.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +++.|++++|++|+|||+++++||+++..|+..+.+....+++|++|||||+|+...+.+..+++..++++
T Consensus        58 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~  137 (167)
T d1c1ya_          58 TAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ  137 (167)
T ss_dssp             ECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             ccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccccccchhHHHHHHHH
Confidence            5788874  88999999999999999999999999999999988766557899999999999998888999999999887


Q ss_pred             c-CCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 Y-NCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~-~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      . ++.|+||||++|. ||+++|++|++.|.
T Consensus       138 ~~~~~~~e~Sak~g~-gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         138 WCNCAFLESSAKSKI-NVNEIFYDLVRQIN  166 (167)
T ss_dssp             TTSCEEEECBTTTTB-SHHHHHHHHHHHHT
T ss_pred             hCCCEEEEEcCCCCc-CHHHHHHHHHHHhc
Confidence            4 6899999999999 99999999998774

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=2.5e-24  Score=152.84  Aligned_cols=105  Identities=24%  Similarity=0.280  Sum_probs=97.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++|+|||++++++|+.+..|+..+.... ..+.|++|||||+|+.+.+.+..+++..++..
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~~~~~~~~~~  138 (167)
T d1z0ja1          60 TAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHG-PPSIVVAIAGNKCDLTDVREVMERDAKDYADS  138 (167)
T ss_dssp             ECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             cCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhcc-CCcceEEEecccchhccccchhHHHHHHHHHH
Confidence            6898884  89999999999999999999999999999998887765 47899999999999998889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +++.|+||||++|. ||+++|.+|++.|.
T Consensus       139 ~~~~~~e~SAk~~~-nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         139 IHAIFVETSAKNAI-NINELFIEISRRIP  166 (167)
T ss_dssp             TTCEEEECBTTTTB-SHHHHHHHHHHHCC
T ss_pred             cCCEEEEEecCCCC-CHHHHHHHHHHhCC
Confidence            99999999999999 99999999998763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.6e-24  Score=153.04  Aligned_cols=108  Identities=30%  Similarity=0.496  Sum_probs=96.6

Q ss_pred             CCCCCCc-cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792           2 TIGLTEG-TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY   80 (173)
Q Consensus         2 TaG~e~~-~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~   80 (173)
                      |+|++.+ .+..|++++|++++|||+++++||+.+..|+..+.......++|+++||||+|+.+.+.|+.+++..+++++
T Consensus        57 ~~g~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~  136 (168)
T d2atva1          57 TAGQEDTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATEL  136 (168)
T ss_dssp             CCCCCCCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHHH
T ss_pred             cccccccccchhhhcccccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhhccCcHHHHHHHHHHh
Confidence            7898876 667899999999999999999999999998877666554578999999999999888899999999999999


Q ss_pred             CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          81 NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        81 ~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++.|+||||++|..||+++|..|++.+.+
T Consensus       137 ~~~~~e~Saktg~gnV~e~F~~l~~~i~~  165 (168)
T d2atva1         137 ACAFYECSACTGEGNITEIFYELCREVRR  165 (168)
T ss_dssp             TSEEEECCTTTCTTCHHHHHHHHHHHHHH
T ss_pred             CCeEEEEccccCCcCHHHHHHHHHHHHHH
Confidence            99999999999972499999999998764

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.5e-24  Score=152.77  Aligned_cols=106  Identities=30%  Similarity=0.483  Sum_probs=97.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++..  ++..|+++||++++|||+++++||+.+..|+..+.......++|++|||||+|+.+.+.+..+++..+++.
T Consensus        58 ~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~  137 (167)
T d1kaoa_          58 TAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE  137 (167)
T ss_dssp             CCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCCCCCEEEEEEccchhhcccchHHHHHHHHHH
Confidence            6788874  88899999999999999999999999999999888765457899999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +++.|+||||++|. ||+++|..|++.+.
T Consensus       138 ~~~~~~e~Sak~g~-~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         138 WGCPFMETSAKSKT-MVDELFAEIVRQMN  165 (167)
T ss_dssp             HTSCEEEECTTCHH-HHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCc-CHHHHHHHHHHHHc
Confidence            99999999999999 99999999998764

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.4e-24  Score=152.07  Aligned_cols=107  Identities=28%  Similarity=0.408  Sum_probs=95.3

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|++++|++++|||+++++||+.+..|+.++.+......+|+||||||+|+.+.+.++.+++..+++.
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~  139 (171)
T d2erya1          60 TAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQ  139 (171)
T ss_dssp             CC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTSCSSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhhccchHHHHHHHHHH
Confidence            6788874  78899999999999999999999999999999888776557899999999999998889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|++|||++|. ||+++|..|++.+.+
T Consensus       140 ~~~~~~e~Sak~~~-~i~e~f~~l~~~i~k  168 (171)
T d2erya1         140 LKVTYMEASAKIRM-NVDQAFHELVRVIRK  168 (171)
T ss_dssp             TTCEEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCc-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.3e-24  Score=151.01  Aligned_cols=105  Identities=25%  Similarity=0.335  Sum_probs=97.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  ++..|+.++|++|+|||++++.||+.+..|+.++.... ..++|++|||||+|+.+.+.+..+++..+++.
T Consensus        56 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~  134 (164)
T d1yzqa1          56 TAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTER-GSDVIIMLVGNKTDLADKRQVSIEEGERKAKE  134 (164)
T ss_dssp             ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHH-TTSSEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             cCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhc-CCCceEEEEecccchhhhhhhhHHHHHHHHHH
Confidence            6888884  88999999999999999999999999999999988766 46899999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +++.|+||||++|. ||+++|.+|++.|.
T Consensus       135 ~~~~~~e~SAk~g~-~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         135 LNVMFIETSAKAGY-NVKQLFRRVAAALP  162 (164)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHSC
T ss_pred             cCCEEEEecCCCCc-CHHHHHHHHHHhhC
Confidence            99999999999999 99999999998764

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.4e-24  Score=152.51  Aligned_cols=106  Identities=26%  Similarity=0.279  Sum_probs=97.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  +++.|++++|++|+|||+++.++|+.+..|...+.+.. .+++|++|||||+|+.+.+.++.+++..++..
T Consensus        62 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~  140 (170)
T d1r2qa_          62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQA-SPNIVIALSGNKADLANKRAVDFQEAQSYADD  140 (170)
T ss_dssp             ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhcc-CCCceEEeecccccccccccccHHHHHHHHHh
Confidence            6899884  88999999999999999999999999999998887655 47899999999999998899999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|+||||++|. ||+++|+.|++.|.+
T Consensus       141 ~~~~~~e~SAk~g~-~V~e~f~~l~~~i~~  169 (170)
T d1r2qa_         141 NSLLFMETSAKTSM-NVNEIFMAIAKKLPK  169 (170)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHTSCC
T ss_pred             cCCEEEEeeCCCCC-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999987765

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.6e-24  Score=156.33  Aligned_cols=107  Identities=28%  Similarity=0.337  Sum_probs=98.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..|++++|++|+|||++++.+|+.+..|+.++..+.....+|++|||||+|+...++++.+++..++++
T Consensus        71 t~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~  150 (186)
T d2f7sa1          71 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADK  150 (186)
T ss_dssp             EESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeeccchhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHH
Confidence            6888874  88999999999999999999999999999998887765457789999999999998899999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|++|||++|. ||+++|++|++.+.+
T Consensus       151 ~~~~~~e~Sak~~~-~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         151 YGIPYFETSAATGQ-NVEKAVETLLDLIMK  179 (186)
T ss_dssp             TTCCEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=9.2e-24  Score=150.21  Aligned_cols=106  Identities=29%  Similarity=0.356  Sum_probs=97.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||+++.  +++.|+++||++|+|||++++++|..+..|+..+.... ....|+++||||+|+.+.+.++.+++..+++.
T Consensus        61 t~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iivv~nK~D~~~~~~v~~~~~~~~~~~  139 (169)
T d3raba_          61 TAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYS-WDNAQVLLVGNKCDMEDERVVSSERGRQLADH  139 (169)
T ss_dssp             ECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHC-CSCCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhccc-CCcceEEEEEeecccccccccchhhhHHHHHH
Confidence            7999884  88999999999999999999999999999888776654 46899999999999998889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|++|||++|. ||+++|++|++.+.+
T Consensus       140 ~~~~~~e~Sak~g~-gv~e~f~~l~~~i~e  168 (169)
T d3raba_         140 LGFEFFEASAKDNI-NVKQTFERLVDVICE  168 (169)
T ss_dssp             HTCEEEECBTTTTB-SHHHHHHHHHHHHHT
T ss_pred             cCCEEEEecCCCCc-CHHHHHHHHHHHHhh
Confidence            99999999999999 999999999998876

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-23  Score=150.29  Aligned_cols=105  Identities=20%  Similarity=0.312  Sum_probs=91.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |+|++++  ++..|++++|++|+|||+++++||+++.. |...+....  .++|+++||||+||.+            .+
T Consensus        64 ~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~--~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r  141 (185)
T d2atxa1          64 TAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA--PNVPFLLIGTQIDLRDDPKTLARLNDMKEK  141 (185)
T ss_dssp             CCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTCCEEEEEECTTSTTCHHHHHHHTTTTCC
T ss_pred             ccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhcC--CCCCeeEeeeccccccchhhhhhhhhcccc
Confidence            7899884  88999999999999999999999998866 555555544  7899999999999864            46


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .|+.+++.+++++++ +.|+||||++|. ||+++|+.+++.++.
T Consensus       142 ~v~~~~~~~~a~~~~~~~~~E~SAk~~~-gv~e~F~~li~~il~  184 (185)
T d2atxa1         142 PICVEQGQKLAKEIGACCYVECSALTQK-GLKTVFDEAIIAILT  184 (185)
T ss_dssp             CCCHHHHHHHHHHHTCSCEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHcCCCEEEEecCCCCc-CHHHHHHHHHHHHcC
Confidence            789999999999887 789999999999 999999999988764

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.7e-23  Score=148.28  Aligned_cols=105  Identities=22%  Similarity=0.246  Sum_probs=96.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..|++++|++|+|||+++.+||+.+..|+..+.+.. ....|+++||||+|+...+.+..+++..+++.
T Consensus        60 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilvgnK~Dl~~~~~~~~~~~~~~~~~  138 (166)
T d1z0fa1          60 TAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLT-NPNTVIILIGNKADLEAQRDVTYEEAKQFAEE  138 (166)
T ss_dssp             CTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             cCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhc-cccceEEEEcccccchhhcccHHHHHHHHHHH
Confidence            7899884  88999999999999999999999999999998887765 47899999999999988888889999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +++.|++|||++|. ||+++|..|++.++
T Consensus       139 ~~~~~~e~Saktg~-~v~e~f~~i~~~i~  166 (166)
T d1z0fa1         139 NGLLFLEASAKTGE-NVEDAFLEAAKKIY  166 (166)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHC
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHhC
Confidence            99999999999999 99999999998763

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=149.16  Aligned_cols=106  Identities=27%  Similarity=0.347  Sum_probs=97.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++..  +++.+++++|++|+|||+++++||+.+..|+..+.+.. ..++|++|||||+|+...+.+..+++..+++.
T Consensus        59 ~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~-~~~~piilv~nK~D~~~~~~~~~~~~~~~a~~  137 (173)
T d2a5ja1          59 TAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHS-SSNMVIMLIGNKSDLESRRDVKREEGEAFARE  137 (173)
T ss_dssp             CTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             ccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhC-CCCCeEEEEecCCchhhhhhhHHHHHHHHHHH
Confidence            6788774  88999999999999999999999999999999888765 47899999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|+||||++|. ||+++|.+|++.+.+
T Consensus       138 ~~~~~~e~Sa~tg~-~V~e~f~~i~~~i~~  166 (173)
T d2a5ja1         138 HGLIFMETSAKTAC-NVEEAFINTAKEIYR  166 (173)
T ss_dssp             HTCEEEEECTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCCEEEEecCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=9.7e-24  Score=149.20  Aligned_cols=95  Identities=22%  Similarity=0.303  Sum_probs=87.6

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      .++.|++++|++|+|||++|++||+.+..|+.++.++....++|++|||||+|+.+.++++.++++.+++.+++.|+|||
T Consensus        68 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S  147 (165)
T d1z06a1          68 MVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETS  147 (165)
T ss_dssp             THHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECC
T ss_pred             cceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEe
Confidence            67889999999999999999999999999999998876557899999999999998889999999999999999999999


Q ss_pred             ccC---CcccHHHHHHHHH
Q psy2792          89 VAD---NSPAIYQAFDHLL  104 (173)
Q Consensus        89 ak~---g~~~v~~lf~~l~  104 (173)
                      ||+   +. ||+++|++|+
T Consensus       148 Akt~~~~~-~V~e~F~~lA  165 (165)
T d1z06a1         148 AKNPNDND-HVEAIFMTLA  165 (165)
T ss_dssp             SSSGGGGS-CHHHHHHHHC
T ss_pred             cccCCcCc-CHHHHHHHhC
Confidence            996   56 9999999874

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.2e-23  Score=149.71  Aligned_cols=106  Identities=21%  Similarity=0.248  Sum_probs=97.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||++++  +++.|++++|++|+|||++++.+|+.+..|+..+.+.. ...+|++|||||+|+.+.+.++.+++..+++.
T Consensus        61 t~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~~~~ilvgnK~D~~~~~~v~~~~~~~~~~~  139 (171)
T d2ew1a1          61 TAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYA-SNKVITVLVGNKIDLAERREVSQQRAEEFSEA  139 (171)
T ss_dssp             ECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCSSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhcccc-cccccEEEEEeecccccccchhhhHHHHHHHh
Confidence            7999884  88999999999999999999999999999998887765 46799999999999988888999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|++|||++|. ||+++|.+|+..+..
T Consensus       140 ~~~~~~~~SAktg~-gV~e~f~~l~~~l~~  168 (171)
T d2ew1a1         140 QDMYYLETSAKESD-NVEKLFLDLACRLIS  168 (171)
T ss_dssp             HTCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             CCCEEEEEccCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999988765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3e-23  Score=148.51  Aligned_cols=105  Identities=20%  Similarity=0.272  Sum_probs=90.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHH-HHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |+|++.+  +++.||+++|++|+|||+++++||+++..| ...+....  +++|++|||||+|+.+            .+
T Consensus        57 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  134 (177)
T d1kmqa_          57 TAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC--PNVPIILVGNKKDLRNDEHTRRELAKMKQE  134 (177)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECGGGTTCHHHHHHHHHTTCC
T ss_pred             cCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhC--CCCceEEeeecccccchhhHHHHHHHhhcc
Confidence            7899884  899999999999999999999999998775 45455443  6899999999999963            24


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.+++..++++++ ..|+||||++|. ||+++|+.+++.+++
T Consensus       135 ~v~~~e~~~~a~~~~~~~~~E~SAkt~~-gi~e~F~~i~~~~l~  177 (177)
T d1kmqa_         135 PVKPEEGRDMANRIGAFGYMECSAKTKD-GVREVFEMATRAALQ  177 (177)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHHC
T ss_pred             cccHHHHHHHHHHcCCcEEEEecCCCCc-CHHHHHHHHHHHHhC
Confidence            688899999999988 579999999999 999999999988764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=7.4e-24  Score=150.96  Aligned_cols=106  Identities=21%  Similarity=0.293  Sum_probs=93.5

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++  .+++.|++++|++++|||+++++||+.+..|+..+.+..  +++|++|||||+|+...+..  +++..++..
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~--~~~~~~~~~  134 (170)
T d1i2ma_          59 TAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC--ENIPIVLCGNKVDIKDRKVK--AKSIVFHRK  134 (170)
T ss_dssp             CTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH--CSCCEEEEEECCCCSCSCCT--TTSHHHHSS
T ss_pred             cccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc--CCCceeeecchhhhhhhhhh--hHHHHHHHH
Confidence            788877  489999999999999999999999999999999998876  68999999999999765543  345678888


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      .++.|+||||++|. ||+++|.+|++.++..+.
T Consensus       135 ~~~~~~e~Sak~~~-~v~e~f~~l~~~l~~~~~  166 (170)
T d1i2ma_         135 KNLQYYDISAKSNY-NFEKPFLWLARKLIGDPN  166 (170)
T ss_dssp             CSSEEEEEBTTTTB-TTTHHHHHHHHHHHTCTT
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHccCCC
Confidence            99999999999999 999999999999986443

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.8e-23  Score=145.53  Aligned_cols=106  Identities=25%  Similarity=0.383  Sum_probs=96.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++..  .++.++++++++++|||++++.+|+.+..|+..+.+.....++|+++||||+|+.. +.++.+++..+++.
T Consensus        58 ~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~  136 (166)
T d1ctqa_          58 TAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAA-RTVESRQAQDLARS  136 (166)
T ss_dssp             ECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSSCCEEEEEECTTCSC-CCSCHHHHHHHHHH
T ss_pred             ccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCCCCeEEEEeccccccc-ccccHHHHHHHHHH
Confidence            4677663  78889999999999999999999999999999999877557899999999999864 67788999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|++|||++|. ||+++|.+|++.+.+
T Consensus       137 ~~~~~~e~Sak~g~-gi~e~f~~i~~~i~~  165 (166)
T d1ctqa_         137 YGIPYIETSAKTRQ-GVEDAFYTLVREIRQ  165 (166)
T ss_dssp             HTCCEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred             hCCeEEEEcCCCCc-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999998865

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.3e-23  Score=146.68  Aligned_cols=107  Identities=22%  Similarity=0.289  Sum_probs=88.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCc-cCCHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLR-QVDESLGRS   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~-~v~~~~~~~   75 (173)
                      |+|+++.  ++..|++.+|++++|||++++.||+.+..|+.++.....   ..++|++|||||+|+.+.+ .++.+++.+
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~  138 (175)
T d1ky3a_          59 TAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE  138 (175)
T ss_dssp             CC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCSCHHHHHH
T ss_pred             cCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhhcccccCcEEEEecccchhhhhcchhHHHHHH
Confidence            7898883  888999999999999999999999999999999876542   3578999999999998654 478889999


Q ss_pred             HhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 TAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 ~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++..++ +.|++|||++|. ||+++|++|++.+++
T Consensus       139 ~~~~~~~~~~~e~SA~~g~-gv~e~f~~l~~~~l~  172 (175)
T d1ky3a_         139 LAKSLGDIPLFLTSAKNAI-NVDTAFEEIARSALQ  172 (175)
T ss_dssp             HHHHTTSCCEEEEBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCeEEEEeCCCCc-CHHHHHHHHHHHHHh
Confidence            998886 789999999999 999999999998876

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=146.10  Aligned_cols=107  Identities=16%  Similarity=0.292  Sum_probs=92.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHH-HHHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVST-LQNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~-~~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |+|++++  ++..||+++|++|+|||+++++||+++..| ...+....  .++|+++||||+||.+            .+
T Consensus        58 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~  135 (191)
T d2ngra_          58 TAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC--PKTPFLLVGTQIDLRDDPSTIEKLAKNKQK  135 (191)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCCEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             cccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcC--CCCceEEEeccccccccchhhhhhhhcccc
Confidence            7899884  999999999999999999999999999874 55555443  7899999999999853            34


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .|+.+++..++.+++ +.|+||||++|. ||+++|+.++..+.+.+
T Consensus       136 ~v~~~~~~~~~~~~~~~~~~e~SAk~~~-~V~e~f~~l~~~~~~~~  180 (191)
T d2ngra_         136 PITPETAEKLARDLKAVKYVECSALTQK-GLKNVFDEAILAALEPP  180 (191)
T ss_dssp             CCCHHHHHHHHHHTTCSCEEECCTTTCT-THHHHHHHHHHHHTSCC
T ss_pred             cccHHHHHHHHHHcCCCeEEEEeCCCCc-CHHHHHHHHHHHHhcCc
Confidence            688999999998864 789999999999 99999999999887743

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.4e-22  Score=143.54  Aligned_cols=106  Identities=32%  Similarity=0.426  Sum_probs=96.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..+++++|++|+|||+++++||+.+..|+..+.+.. .+++|++|||||+|+.+.+.+..+....+...
T Consensus        60 ~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~-~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~  138 (175)
T d2f9la1          60 TAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA-DSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK  138 (175)
T ss_dssp             CSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCGGGCCSCHHHHHHHHHH
T ss_pred             cCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhc-CCCCcEEEEEeeecccccccchHHHHHHhhcc
Confidence            7898884  88999999999999999999999999999999998876 46799999999999988777888888888889


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ++..|++|||++|. ||+++|+++++.+.+
T Consensus       139 ~~~~~~e~Sa~~g~-~i~e~f~~l~~~i~~  167 (175)
T d2f9la1         139 NNLSFIETSALDST-NVEEAFKNILTEIYR  167 (175)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cCceEEEEecCCCc-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.5e-22  Score=141.96  Aligned_cols=105  Identities=28%  Similarity=0.345  Sum_probs=92.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||+++.  ++..|++++|++++|||+++++||..+..|+..+.... ....|+++|+||+|+.+.+.++.+++..+++.
T Consensus        63 t~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~d~~~~~~v~~~~~~~~~~~  141 (170)
T d2g6ba1          63 TAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYA-QHDVALMLLGNKVDSAHERVVKREDGEKLAKE  141 (170)
T ss_dssp             CCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECCSTTSCCCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhcc-CCCceEEEEEeeechhhcccccHHHHHHHHHH
Confidence            8999884  88999999999999999999999999999988877665 36789999999999998889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +++.|++|||++|. ||+++|.+|++.|.
T Consensus       142 ~~~~~~e~Sak~g~-gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         142 YGLPFMETSAKTGL-NVDLAFTAIAKELK  169 (170)
T ss_dssp             HTCCEEECCTTTCT-THHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCc-CHHHHHHHHHHHcC
Confidence            99999999999999 99999999998875

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2e-22  Score=143.68  Aligned_cols=106  Identities=21%  Similarity=0.231  Sum_probs=98.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  +++.|++++|++|+|||.+++++|..+..|+..+.... ..++|+++||||+|+.....+..+.+..++..
T Consensus        61 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~~~  139 (174)
T d2bmea1          61 TAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLA-SQNIVIILCGNKKDLDADREVTFLEASRFAQE  139 (174)
T ss_dssp             ECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECGGGGGGCCSCHHHHHHHHHH
T ss_pred             CCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhccccccc-CCceEEEEEEecccccchhchhhhHHHHHHHh
Confidence            7899884  88999999999999999999999999999999988766 46899999999999988888989999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|++|||++|. ||+++|.+|++.+++
T Consensus       140 ~~~~~~e~Sak~~~-gi~e~f~~l~~~i~~  168 (174)
T d2bmea1         140 NELMFLETSALTGE-NVEEAFVQCARKILN  168 (174)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeCCCCc-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.5e-22  Score=144.41  Aligned_cols=107  Identities=21%  Similarity=0.299  Sum_probs=90.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHH-HHHHHHhhhCCCCCcEEEEEeCCCCCCC------------c
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVS-TLQNLQRHRAVNNVPVMLLANKLDLEHL------------R   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~-~~~~i~~~~~~~~~piilv~NK~Dl~~~------------~   66 (173)
                      |+|++.+  ++..||+++|++|+|||+++++||+++.. |...+..+.  .++|++|||||+|+.+.            +
T Consensus        60 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~--~~~piilvgnK~Dl~~~~~~~~~~~~~~~~  137 (183)
T d1mh1a_          60 TAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC--PNTPIILVGTKLDLRDDKDTIEKLKEKKLT  137 (183)
T ss_dssp             CCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS--TTSCEEEEEECHHHHTCHHHHHHHHHTTCC
T ss_pred             ccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC--CCCcEEEEeecccchhhhhhhhhhhhcccc
Confidence            6788774  88999999999999999999999999976 555555554  68999999999998543            3


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .+...++..+++.++ +.|+||||++|. ||+++|+.|++.++..+
T Consensus       138 ~~~~~~~~~~a~~~~~~~~~E~SAk~~~-~V~e~F~~l~~~il~pp  182 (183)
T d1mh1a_         138 PITYPQGLAMAKEIGAVKYLECSALTQR-GLKTVFDEAIRAVLCPP  182 (183)
T ss_dssp             CCCHHHHHHHHHHTTCSEEEECCTTTCT-THHHHHHHHHHHHSCCC
T ss_pred             chhhHHHHHHHHHcCCceEEEcCCCCCc-CHHHHHHHHHHHHcCCC
Confidence            456778888888887 789999999999 99999999999987643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=8.4e-22  Score=142.97  Aligned_cols=108  Identities=27%  Similarity=0.319  Sum_probs=99.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  ++..|+++||++|+|||++++++|..+..|...+.+.. ..++|++|||||+|+.+...+..++...++..
T Consensus        62 t~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~-~~~~~iilv~nK~D~~~~~~~~~~~~~~~~~~  140 (194)
T d2bcgy1          62 TAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYA-TSTVLKLLVGNKCDLKDKRVVEYDVAKEFADA  140 (194)
T ss_dssp             CTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECTTCTTTCCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcc-cCCceEEEEEeccccccccchhHHHHhhhhhc
Confidence            8999984  89999999999999999999999999999988887655 47899999999999998889999999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      .++.|++|||++|. ||+++|++|++.+.+..
T Consensus       141 ~~~~~~e~SAk~g~-gi~e~f~~l~~~i~~~~  171 (194)
T d2bcgy1         141 NKMPFLETSALDST-NVEDAFLTMARQIKESM  171 (194)
T ss_dssp             TTCCEEECCTTTCT-THHHHHHHHHHHHHHHC
T ss_pred             cCcceEEEecCcCc-cHHHHHHHHHHHHHHHh
Confidence            99999999999999 99999999999888644

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=5.3e-22  Score=141.45  Aligned_cols=106  Identities=30%  Similarity=0.410  Sum_probs=86.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|++++  +++.|++++|++|+|||++++.||+.+..|...+.... ..++|+++||||+|+...+.+..+++..++..
T Consensus        62 ~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~iilv~~k~D~~~~~~~~~~~~~~~~~~  140 (173)
T d2fu5c1          62 TAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHA-SADVEKMILGNKCDVNDKRQVSKERGEKLALD  140 (173)
T ss_dssp             C---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEEC--CCSCCCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhc-cCCceEEEEEecccchhhcccHHHHHHHHHHh
Confidence            7899884  88999999999999999999999999999998887655 47899999999999988888888889999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .++.|++|||++|. ||+++|++|++.+.+
T Consensus       141 ~~~~~~e~Sa~~g~-gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         141 YGIKFMETSAKANI-NVENAFFTLARDIKA  169 (173)
T ss_dssp             HTCEEEECCC---C-CHHHHHHHHHHHHHH
T ss_pred             cCCEEEEEeCCCCC-CHHHHHHHHHHHHHH
Confidence            99999999999999 999999999998865

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=8.6e-22  Score=141.33  Aligned_cols=105  Identities=18%  Similarity=0.191  Sum_probs=89.9

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHH-HHHHhhhCCCCCcEEEEEeCCCCCC------------Cc
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTL-QNLQRHRAVNNVPVMLLANKLDLEH------------LR   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~-~~i~~~~~~~~~piilv~NK~Dl~~------------~~   66 (173)
                      |+|++..  +++.|++++|++|+|||+++++||+.+..|. ..+....  .++|++|||||+|+..            .+
T Consensus        57 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~--~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~  134 (179)
T d1m7ba_          57 TSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC--PNTKMLLVGCKSDLRTDVSTLVELSNHRQT  134 (179)
T ss_dssp             ECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC--TTCEEEEEEECGGGGGCHHHHHHHHTTTCC
T ss_pred             ccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccC--CcceEEEEEecccccccchhhHHHhhhhcC
Confidence            6888873  8889999999999999999999999998754 4444443  6899999999999853            46


Q ss_pred             cCCHHHHHHHhhhcC-CeEEEEcccCCccc-HHHHHHHHHHHHhc
Q psy2792          67 QVDESLGRSTAVKYN-CTFHEVSVADNSPA-IYQAFDHLLTESRG  109 (173)
Q Consensus        67 ~v~~~~~~~~~~~~~-~~~~e~Sak~g~~~-v~~lf~~l~~~i~~  109 (173)
                      .|+.+++..++++.+ ..|+||||++|. | |+++|+.++..++.
T Consensus       135 ~V~~~e~~~~a~~~~~~~y~E~SAk~~~-n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         135 PVSYDQGANMAKQIGAATYIECSALQSE-NSVRDIFHVATLACVN  178 (179)
T ss_dssp             CCCHHHHHHHHHHHTCSEEEECBTTTBH-HHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHhCCCeEEEEeCCCCC-cCHHHHHHHHHHHHhc
Confidence            688999999999887 579999999998 6 99999999988765

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=6.6e-22  Score=140.44  Aligned_cols=105  Identities=20%  Similarity=0.240  Sum_probs=94.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC---CccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH---LRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~---~~~v~~~~~~~~   76 (173)
                      |+|+++.  +++.|+.++|++|+|||++++.||+.+..|+.++.... ....|+++|+||+|+.+   .+.+..+++..+
T Consensus        59 ~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~  137 (170)
T d1ek0a_          59 TAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQA-SKDIIIALVGNKIDMLQEGGERKVAREEGEKL  137 (170)
T ss_dssp             ECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHS-CTTCEEEEEEECGGGGGSSCCCCSCHHHHHHH
T ss_pred             cCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhcccc-ccccceeeeecccccccccchhhhhHHHHHHH
Confidence            6888874  88999999999999999999999999999988777655 36789999999999854   478899999999


Q ss_pred             hhhcCCeEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        77 ~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      ++.+++.|+||||++|. ||+++|..|++.|+
T Consensus       138 ~~~~~~~~~e~Sak~g~-gV~e~F~~i~~~i~  168 (170)
T d1ek0a_         138 AEEKGLLFFETSAKTGE-NVNDVFLGIGEKIP  168 (170)
T ss_dssp             HHHHTCEEEECCTTTCT-THHHHHHHHHTTSC
T ss_pred             HHHcCCEEEEecCCCCc-CHHHHHHHHHHHhc
Confidence            99999999999999999 99999999987654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.9e-21  Score=138.98  Aligned_cols=109  Identities=28%  Similarity=0.313  Sum_probs=99.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |+|+++.  +++.|+.++|++|+|||++++.+|+.+..|+.++.+.......|+++++||.|.. .+.+..+++..+++.
T Consensus        63 t~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~  141 (177)
T d1x3sa1          63 TAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARK  141 (177)
T ss_dssp             ECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSS-SCCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeeccccc-cccccHHHHHHHHHH
Confidence            7899884  8999999999999999999999999999999999887655679999999999975 478889999999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhcCCC
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      +++.|++|||++|. ||+++|++|++.+.+.+.
T Consensus       142 ~~~~~~e~Sa~tg~-gv~e~f~~l~~~l~~~p~  173 (177)
T d1x3sa1         142 HSMLFIEASAKTCD-GVQCAFEELVEKIIQTPG  173 (177)
T ss_dssp             TTCEEEECCTTTCT-THHHHHHHHHHHHHTSGG
T ss_pred             CCCEEEEEeCCCCC-CHHHHHHHHHHHHccCcc
Confidence            99999999999999 999999999999998543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=5.1e-21  Score=136.32  Aligned_cols=106  Identities=21%  Similarity=0.302  Sum_probs=93.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |+|+.+.  ....++..+|++++|||++++.||+.+..|++++.....   ..++|++|||||+|+.+ +.++.+++..+
T Consensus        62 ~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~  140 (174)
T d1wmsa_          62 TAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAW  140 (174)
T ss_dssp             CCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CSSCHHHHHHH
T ss_pred             ccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh-ccCcHHHHHHH
Confidence            6777763  788899999999999999999999999999988876542   35789999999999964 78899999999


Q ss_pred             hhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 AVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 ~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.+ +.|+||||++|. ||+++|++|++.++.
T Consensus       141 ~~~~~~~~~~e~Sak~~~-gI~e~f~~l~~~il~  173 (174)
T d1wmsa_         141 CRDNGDYPYFETSAKDAT-NVAAAFEEAVRRVLA  173 (174)
T ss_dssp             HHHTTCCCEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred             HHHcCCCeEEEEcCCCCc-CHHHHHHHHHHHHhc
Confidence            98765 889999999999 999999999998875

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1e-20  Score=135.26  Aligned_cols=104  Identities=19%  Similarity=0.335  Sum_probs=88.4

Q ss_pred             CCCCCCccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC--CCCCcEEEEEeCCCCC--CCccCCHHHHHHHh
Q psy2792           2 TIGLTEGTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA--VNNVPVMLLANKLDLE--HLRQVDESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~--~~~~piilv~NK~Dl~--~~~~v~~~~~~~~~   77 (173)
                      |+|+++   ..|++++|++|+|||+++++||+.+..|+..+.....  ...+|+++||||.|+.  ..+.++.+++..++
T Consensus        59 t~g~~~---~~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~  135 (175)
T d2bmja1          59 EAGAPD---AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALC  135 (175)
T ss_dssp             CSSCCC---HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHH
T ss_pred             cccccc---cccccccceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHH
Confidence            677763   5699999999999999999999999999998876532  3678999999988874  45678888998886


Q ss_pred             hh-cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VK-YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~-~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      .. +++.|+||||++|. ||+++|..+++.+..
T Consensus       136 ~~~~~~~~~e~SAk~~~-~v~~~F~~l~~~i~~  167 (175)
T d2bmja1         136 ADMKRCSYYETCATYGL-NVDRVFQEVAQKVVT  167 (175)
T ss_dssp             HTSTTEEEEEEBTTTTB-THHHHHHHHHHHHHH
T ss_pred             HHhCCCeEEEeCCCCCc-CHHHHHHHHHHHHHH
Confidence            54 56889999999999 999999999998875

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.83  E-value=1.8e-20  Score=134.61  Aligned_cols=106  Identities=25%  Similarity=0.348  Sum_probs=90.8

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhC---CCCCcEEEEEeCCCCCCCccCCHHHHHHH
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRA---VNNVPVMLLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~---~~~~piilv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      |+|+++  ..+..++.+||++|+|||++++.+|+.+..|++++.....   ..++|++|||||+|+.+ +.+..++...+
T Consensus        58 ~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~  136 (184)
T d1vg8a_          58 TAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQVATKRAQAW  136 (184)
T ss_dssp             ECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CCSCHHHHHHH
T ss_pred             cCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccccccCCCEEEEEEeecccc-cchhHHHHHHH
Confidence            678777  3888999999999999999999999999999998877642   24689999999999875 55677777777


Q ss_pred             hh-hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 AV-KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 ~~-~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +. ..++.|++|||++|. ||+++|++|++.+.+
T Consensus       137 ~~~~~~~~~~e~Sak~~~-gI~e~f~~l~~~i~~  169 (184)
T d1vg8a_         137 CYSKNNIPYFETSAKEAI-NVEQAFQTIARNALK  169 (184)
T ss_dssp             HHHTTSCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             HHHhcCCeEEEEcCCCCc-CHHHHHHHHHHHHHh
Confidence            65 457899999999999 999999999998876

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=4.3e-20  Score=130.44  Aligned_cols=105  Identities=25%  Similarity=0.325  Sum_probs=94.6

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK   79 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~   79 (173)
                      |||++++  ++..|++++|++|+|||+++++||+.+..|+..+.... ....|+++++||.|+.. +.+..+++..++..
T Consensus        58 t~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~i~~~~k~d~~~-~~~~~~~~~~~~~~  135 (166)
T d1g16a_          58 TAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHA-NDEAQLLLVGNKSDMET-RVVTADQGEALAKE  135 (166)
T ss_dssp             CTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHS-CTTCEEEEEEECTTCTT-CCSCHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccc-cCcceeeeecchhhhhh-hhhhHHHHHHHHHh
Confidence            8999874  88999999999999999999999999999888777765 46789999999999864 66778899999999


Q ss_pred             cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          80 YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        80 ~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +++.|++|||++|. ||+++|++|++.+.+
T Consensus       136 ~~~~~~~~Sa~~~~-~v~e~f~~l~~~i~~  164 (166)
T d1g16a_         136 LGIPFIESSAKNDD-NVNEIFFTLAKLIQE  164 (166)
T ss_dssp             HTCCEEECBTTTTB-SHHHHHHHHHHHHHH
T ss_pred             cCCeEEEECCCCCC-CHHHHHHHHHHHHHh
Confidence            99999999999999 999999999998865

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.81  E-value=8.1e-21  Score=136.12  Aligned_cols=105  Identities=16%  Similarity=0.158  Sum_probs=82.4

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----   75 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----   75 (173)
                      |+|++.  .++..|+.++|++++|||++|+.+|.....|+..+.......++|++|||||+|+.+.  ++.++...    
T Consensus        68 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~~i~~~~~~  145 (182)
T d1moza_          68 LGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA--LSASEVSKELNL  145 (182)
T ss_dssp             EC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC--CCHHHHHHHTTT
T ss_pred             cccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc--cCHHHHHHHHHH
Confidence            678877  3889999999999999999999999999888877766554578999999999999642  23333322    


Q ss_pred             -HhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          76 -TAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        76 -~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                       .+...++.|++|||++|+ ||+++|++|++.+.+
T Consensus       146 ~~~~~~~~~~~e~SA~~g~-gv~e~~~~l~~~i~~  179 (182)
T d1moza_         146 VELKDRSWSIVASSAIKGE-GITEGLDWLIDVIKE  179 (182)
T ss_dssp             TTCCSSCEEEEEEBGGGTB-THHHHHHHHHHHHHH
T ss_pred             HHHhhCCCEEEEEECCCCC-CHHHHHHHHHHHHHH
Confidence             334456789999999999 999999999998865

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.80  E-value=8.4e-20  Score=129.82  Aligned_cols=102  Identities=19%  Similarity=0.160  Sum_probs=82.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----   75 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----   75 (173)
                      |+|+++.  .+..|++++|++|+|||+++..+|.++..|+.++.......++|++|||||+|+.+...  .....+    
T Consensus        67 ~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~--~~~~~~~~~~  144 (176)
T d1fzqa_          67 IGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAP--ASEIAEGLNL  144 (176)
T ss_dssp             CSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCC--HHHHHHHTTG
T ss_pred             ccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEecccccccc--HHHHHHHHHH
Confidence            6787774  88899999999999999999999999988887777655456899999999999975332  222222    


Q ss_pred             -HhhhcCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          76 -TAVKYNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        76 -~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                       .+....+.+++|||++|. ||+++|+||++.
T Consensus       145 ~~~~~~~~~~~~~SA~tg~-gv~e~~~~l~~~  175 (176)
T d1fzqa_         145 HTIRDRVWQIQSCSALTGE-GVQDGMNWVCKN  175 (176)
T ss_dssp             GGCCSSCEEEEECCTTTCT-THHHHHHHHHHT
T ss_pred             HHHHhcCCEEEEEeCCCCC-CHHHHHHHHHhc
Confidence             233445779999999999 999999999875

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.80  E-value=6.9e-20  Score=130.25  Aligned_cols=105  Identities=19%  Similarity=0.279  Sum_probs=82.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc---CCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ---VDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---v~~~~~~~~   76 (173)
                      |+|++..  .+..|++++|++|+|||+++.++|..+..|+..+.+.....++|++||+||+|+.+...   +....+...
T Consensus        63 ~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~~i~~~~~~~~  142 (173)
T d1e0sa_          63 VGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTR  142 (173)
T ss_dssp             ESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred             CCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccccHHHHHHHHHHHH
Confidence            5788774  88889999999999999999999999988887776654356899999999999974322   111112223


Q ss_pred             hhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        77 ~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      +...++.+++|||++|+ ||+++|++|.+.+
T Consensus       143 ~~~~~~~~~e~SA~tg~-gv~e~~~~l~~~~  172 (173)
T d1e0sa_         143 IRDRNWYVQPSCATSGD-GLYEGLTWLTSNY  172 (173)
T ss_dssp             CCSSCEEEEECBTTTTB-THHHHHHHHHHHC
T ss_pred             HHhCCCEEEEeeCCCCc-CHHHHHHHHHHhc
Confidence            34446779999999999 9999999998764

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.78  E-value=8.7e-20  Score=128.64  Aligned_cols=103  Identities=19%  Similarity=0.209  Sum_probs=82.8

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHH-----H
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLG-----R   74 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~-----~   74 (173)
                      |+|++.  ..+..|+.++|++++|||+++.++|+.+..|+..+......+++|++|||||.|+.+..  ...+.     .
T Consensus        54 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~--~~~~i~~~~~~  131 (164)
T d1zd9a1          54 IGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL--DEKELIEKMNL  131 (164)
T ss_dssp             ECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC--CHHHHHHHTTG
T ss_pred             ccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh--hHHHHHHHHHH
Confidence            578776  38889999999999999999999999999988888766545789999999999996432  22222     2


Q ss_pred             HHhhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          75 STAVKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        75 ~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .++...++.+++|||++|. ||+++|++|++.+
T Consensus       132 ~~~~~~~~~~~e~Sa~~g~-gv~e~~~~l~~~~  163 (164)
T d1zd9a1         132 SAIQDREICCYSISCKEKD-NIDITLQWLIQHS  163 (164)
T ss_dssp             GGCCSSCEEEEECCTTTCT-THHHHHHHHHHTC
T ss_pred             HHHHhCCCEEEEEeCcCCc-CHHHHHHHHHHcc
Confidence            2334456789999999999 9999999998753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.77  E-value=8.5e-19  Score=123.36  Aligned_cols=105  Identities=17%  Similarity=0.184  Sum_probs=82.5

Q ss_pred             CCCCCC--ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH---
Q psy2792           2 TIGLTE--GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST---   76 (173)
Q Consensus         2 TaG~e~--~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~---   76 (173)
                      |+|++.  ..+..|++++|++++|||++|..+|.....|+..........++|++||+||+|+.+...+  ++....   
T Consensus        53 ~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~--~~~~~~~~~  130 (165)
T d1ksha_          53 VGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALSC--NAIQEALEL  130 (165)
T ss_dssp             ECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHHHTTG
T ss_pred             cCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEeccccccccCH--HHHHHHHHh
Confidence            678876  3888999999999999999999999988777666554443478999999999999754433  332222   


Q ss_pred             --hhhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          77 --AVKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        77 --~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                        ....++.+++|||++|. ||+++|++|++.+..
T Consensus       131 ~~~~~~~~~~~~~Sa~~g~-gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         131 DSIRSHHWRIQGCSAVTGE-DLLPGIDWLLDDISS  164 (165)
T ss_dssp             GGCCSSCEEEEECCTTTCT-THHHHHHHHHHHHHT
T ss_pred             hhhhcCCCEEEEEECCCCC-CHHHHHHHHHHHHHc
Confidence              12234679999999999 999999999988764

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.72  E-value=5.4e-18  Score=117.82  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=83.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc---CCHHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ---VDESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---v~~~~~~~~   76 (173)
                      |+|++..  .+..|+.+++++++|||++++.++..+..|+.++........+|+++|+||.|+.+...   +.......+
T Consensus        51 ~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~~~~~i~~~~~~~~  130 (160)
T d1r8sa_          51 VGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHS  130 (160)
T ss_dssp             CCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHTTGGG
T ss_pred             CCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccccHHHHHHHHHHHH
Confidence            5677763  78889999999999999999999999999888887665457799999999999864322   112222334


Q ss_pred             hhhcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          77 AVKYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        77 ~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      +...++.+++|||++|. ||+++|++|++++
T Consensus       131 ~~~~~~~~~~~SAktg~-gi~e~~~~l~~~l  160 (160)
T d1r8sa_         131 LRHRNWYIQATCATSGD-GLYEGLDWLSNQL  160 (160)
T ss_dssp             CSSCCEEEEECBTTTTB-THHHHHHHHHHHC
T ss_pred             HhhCCCEEEEeECCCCC-CHHHHHHHHHhcC
Confidence            55567889999999999 9999999998764

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=2.5e-16  Score=112.02  Aligned_cols=108  Identities=19%  Similarity=0.152  Sum_probs=78.7

Q ss_pred             CCCCCCc----------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHH
Q psy2792           2 TIGLTEG----------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDES   71 (173)
Q Consensus         2 TaG~e~~----------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~   71 (173)
                      |+|+...          ....++.+||++|+|+|+++...... ..|...++...  .+.|+++|+||+|+....   .+
T Consensus        60 tpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~--~~~piilv~NK~Dl~~~~---~~  133 (178)
T d1wf3a1          60 TPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV--GKVPILLVGNKLDAAKYP---EE  133 (178)
T ss_dssp             CCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT--TTSCEEEEEECGGGCSSH---HH
T ss_pred             cccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheeccc--cchhhhhhhcccccccCH---HH
Confidence            7888661          22345789999999999988644332 33455555443  578999999999986432   23


Q ss_pred             HHHHHhhhcC-CeEEEEcccCCcccHHHHHHHHHHHHhcCCCCCcc
Q psy2792          72 LGRSTAVKYN-CTFHEVSVADNSPAIYQAFDHLLTESRGGPPSGIH  116 (173)
Q Consensus        72 ~~~~~~~~~~-~~~~e~Sak~g~~~v~~lf~~l~~~i~~~~~~~~~  116 (173)
                      ....+....+ ..++++||++|. ||++|+++|++.+.++++.+++
T Consensus       134 ~~~~~~~~~~~~~~~~iSA~~~~-gi~~L~~~i~~~lpe~p~~~p~  178 (178)
T d1wf3a1         134 AMKAYHELLPEAEPRMLSALDER-QVAELKADLLALMPEGPFFYPE  178 (178)
T ss_dssp             HHHHHHHTSTTSEEEECCTTCHH-HHHHHHHHHHTTCCBCCCSSCT
T ss_pred             HHHHHHhhcccCceEEEecCCCC-CHHHHHHHHHHhCCCCCCCCCC
Confidence            3344455554 568999999999 9999999999999888877753

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.60  E-value=1.4e-15  Score=107.35  Aligned_cols=97  Identities=11%  Similarity=0.179  Sum_probs=75.8

Q ss_pred             ccHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH-----HhhhcCC
Q psy2792           8 GTLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS-----TAVKYNC   82 (173)
Q Consensus         8 ~~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~-----~~~~~~~   82 (173)
                      .....++..++++++|||.++..+++....+.............|++||+||+|+.....  .++...     .+...++
T Consensus        74 ~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~  151 (177)
T d1zj6a1          74 SSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEISQFLKLTSIKDHQW  151 (177)
T ss_dssp             GGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHHHHHHTGGGCCSSCE
T ss_pred             cchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--HHHHHHHHHHHhhHhcCC
Confidence            377888999999999999999999988877666655544347899999999999865332  222222     2233457


Q ss_pred             eEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          83 TFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        83 ~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      .|++|||++|+ ||+++|++|++.+
T Consensus       152 ~~~~~Sa~tg~-Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         152 HIQACCALTGE-GLCQGLEWMMSRL  175 (177)
T ss_dssp             EEEECBTTTTB-THHHHHHHHHHHH
T ss_pred             EEEEEeCCCCC-CHHHHHHHHHHHh
Confidence            79999999999 9999999999876

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.53  E-value=2.1e-14  Score=99.90  Aligned_cols=100  Identities=17%  Similarity=0.251  Sum_probs=77.5

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc---CCHHHHHHHhhhcCCeEE
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ---VDESLGRSTAVKYNCTFH   85 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~---v~~~~~~~~~~~~~~~~~   85 (173)
                      ....++..++++++++|+++..++.....+.............|+++|+||.|+.+...   +....+..++...++.|+
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~  144 (169)
T d1upta_          65 YWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIF  144 (169)
T ss_dssp             GGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEE
T ss_pred             cchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEE
Confidence            66788999999999999999888888877655555443346789999999999975332   212222334555678899


Q ss_pred             EEcccCCcccHHHHHHHHHHHHhc
Q psy2792          86 EVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        86 e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +|||++|. ||+++|++|++.+.+
T Consensus       145 ~~SA~~g~-gv~e~~~~l~~~l~~  167 (169)
T d1upta_         145 KTSATKGT-GLDEAMEWLVETLKS  167 (169)
T ss_dssp             ECCTTTCT-THHHHHHHHHHHHHT
T ss_pred             EEeCCCCC-CHHHHHHHHHHHHHh
Confidence            99999999 999999999998865

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=7.3e-16  Score=110.18  Aligned_cols=106  Identities=12%  Similarity=-0.010  Sum_probs=75.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHH-----------HHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFD-----------YAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~-----------~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--   66 (173)
                      |||+++.  ++..||++++++++|||+++.++|.           ....|...+.... ...+|+++|+||+|+...+  
T Consensus        49 ~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~-~~~~~~~lv~Nk~d~~~~~~~  127 (195)
T d1svsa1          49 VGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW-FTDTSIILFLNKKDLFEEKIK  127 (195)
T ss_dssp             ECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGG-GTTSEEEEEEECHHHHHHHTT
T ss_pred             cccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccc-cCCCCEEEEeccchhhhhhcc
Confidence            7999984  9999999999999999999988762           3344554444333 4779999999999963211  


Q ss_pred             -------------cCCHHHHH-----HHhh------hcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 -------------QVDESLGR-----STAV------KYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 -------------~v~~~~~~-----~~~~------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                   .....++.     .+..      ...+.+++|||+++. ||+++|+.+.+.+++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~-nv~~~F~~v~~~il~  193 (195)
T d1svsa1         128 KSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK-NVQFVFDAVTDVIIK  193 (195)
T ss_dssp             TSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred             chHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCH-hHHHHHHHHHHHHHh
Confidence                         11112211     1111      123557899999999 999999999888765

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.9e-13  Score=94.25  Aligned_cols=94  Identities=24%  Similarity=0.279  Sum_probs=74.6

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHH------------
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRST------------   76 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~------------   76 (173)
                      ....++..+++++++||.++..++.....|...........+.|+++++||.|+...  +...+....            
T Consensus        60 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~  137 (166)
T d2qtvb1          60 LWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRI  137 (166)
T ss_dssp             GGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---C
T ss_pred             hHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhh
Confidence            788899999999999999999999988888777776665678999999999998642  223332221            


Q ss_pred             hhhcCCeEEEEcccCCcccHHHHHHHHHH
Q psy2792          77 AVKYNCTFHEVSVADNSPAIYQAFDHLLT  105 (173)
Q Consensus        77 ~~~~~~~~~e~Sak~g~~~v~~lf~~l~~  105 (173)
                      ....++.+++|||++|+ ||+|+|+||++
T Consensus       138 ~~~~~~~~~~~SA~tg~-Gv~e~~~~l~~  165 (166)
T d2qtvb1         138 EGQRPVEVFMCSVVMRN-GYLEAFQWLSQ  165 (166)
T ss_dssp             CSSCCEEEEEEBTTTTB-SHHHHHHHHTT
T ss_pred             cccCCCEEEEeeCCCCC-CHHHHHHHHhC
Confidence            12234579999999999 99999999964

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.48  E-value=5.8e-15  Score=102.77  Aligned_cols=88  Identities=15%  Similarity=0.098  Sum_probs=69.7

Q ss_pred             HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792          10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV   89 (173)
Q Consensus        10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa   89 (173)
                      ...++.++|++++++|..+..+++....|...+....  .++|+++|+||+||.+...       .+.+..+..++++||
T Consensus        74 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~iilv~NK~Dl~~~~~-------~~~~~~~~~~~~iSA  144 (161)
T d2gj8a1          74 AWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP--AKLPITVVRNKADITGETL-------GMSEVNGHALIRLSA  144 (161)
T ss_dssp             HHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC--TTCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCT
T ss_pred             HHHHHHhccccceeeccccccchhhhhhhhhhhhhcc--cccceeeccchhhhhhhHH-------HHHHhCCCcEEEEEC
Confidence            4567899999999999999888877777766666554  5799999999999864322       112234578999999


Q ss_pred             cCCcccHHHHHHHHHHHH
Q psy2792          90 ADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        90 k~g~~~v~~lf~~l~~~i  107 (173)
                      ++|. ||++++++|++.+
T Consensus       145 k~~~-gi~~L~~~l~~~l  161 (161)
T d2gj8a1         145 RTGE-GVDVLRNHLKQSM  161 (161)
T ss_dssp             TTCT-THHHHHHHHHHHC
T ss_pred             CCCC-CHHHHHHHHHhhC
Confidence            9999 9999999998753

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.47  E-value=1.4e-14  Score=103.69  Aligned_cols=106  Identities=15%  Similarity=0.050  Sum_probs=78.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChh-----------hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE-----------SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR--   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~-----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~--   66 (173)
                      |+|++..  ++..||++++++++|||.++..           .++....|...+.... ..++|+++|+||+|+...+  
T Consensus        52 ~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~-~~~~~~~~v~NK~Dl~~~~~~  130 (200)
T d2bcjq2          52 VGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPW-FQNSSVILFLNKKDLLEEKIM  130 (200)
T ss_dssp             CCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGG-GSSSEEEEEEECHHHHHHHTT
T ss_pred             ccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhh-ccCccEEEecchhhhhhhccc
Confidence            7899874  9999999999999999998864           4566677877776654 4789999999999974211  


Q ss_pred             --------------cCCHHHHHHHh----------hhcCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 --------------QVDESLGRSTA----------VKYNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 --------------~v~~~~~~~~~----------~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                    ..+...+..+.          ....+.+++|||++|. ||+++|+.|.+.|++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~-ni~~vF~~i~~~I~~  196 (200)
T d2bcjq2         131 YSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTE-NIRFVFAAVKDTILQ  196 (200)
T ss_dssp             TSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred             chHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCH-hHHHHHHHHHHHHHH
Confidence                          11222222221          1123557899999999 999999999988875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.44  E-value=5.7e-13  Score=94.31  Aligned_cols=96  Identities=15%  Similarity=0.118  Sum_probs=69.0

Q ss_pred             hhcccCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792          12 AMICWADGCIIVYSLIDK--ESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV   89 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~--~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa   89 (173)
                      .++..+|++++++|....  .+++....|+.......  .+.|+++|+||+|+.+...  .++..+.....+.++|++||
T Consensus        75 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA  150 (180)
T d1udxa2          75 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL--LRRPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSA  150 (180)
T ss_dssp             HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH--HHSCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCT
T ss_pred             HHHHhhhhhhhhcccccccccchhhhhhhhhcccccc--chhhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEc
Confidence            457899999999998653  23444444544433222  3579999999999975433  22334455566889999999


Q ss_pred             cCCcccHHHHHHHHHHHHhcCCC
Q psy2792          90 ADNSPAIYQAFDHLLTESRGGPP  112 (173)
Q Consensus        90 k~g~~~v~~lf~~l~~~i~~~~~  112 (173)
                      ++|. ||++|++.|.+.+...++
T Consensus       151 ~tg~-gid~L~~~i~~~l~~~~~  172 (180)
T d1udxa2         151 LTGA-GLPALKEALHALVRSTPP  172 (180)
T ss_dssp             TTCT-THHHHHHHHHHHHHTSCC
T ss_pred             CCCC-CHHHHHHHHHHHHhhcCC
Confidence            9999 999999999998876443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.43  E-value=6.7e-13  Score=93.42  Aligned_cols=96  Identities=18%  Similarity=0.212  Sum_probs=73.1

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh----------
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV----------   78 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----------   78 (173)
                      ....++..++++++|+|+++...+.....+...........++|++|++||.|+..  .+...+......          
T Consensus        73 ~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~--~~~~~~i~~~~~~~~~~~~~~~  150 (186)
T d1f6ba_          73 VWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGS  150 (186)
T ss_dssp             GGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSC
T ss_pred             HHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccc--cCCHHHHHHHHhhcccchhhhh
Confidence            77889999999999999999999888876555554433347899999999999864  233444333221          


Q ss_pred             -------hcCCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          79 -------KYNCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        79 -------~~~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                             ..++.+++|||++|+ ||+|+|+||++.+
T Consensus       151 ~~~~~~~~~~~~~~~~SA~tg~-Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         151 VSLKELNARPLEVFMCSVLKRQ-GYGEGFRWMAQYI  185 (186)
T ss_dssp             CCTTTCCSCCEEEEECBTTTTB-SHHHHHHHHHTTC
T ss_pred             hhHHHhhcCCCEEEEEeCCCCC-CHHHHHHHHHHhh
Confidence                   223568999999999 9999999998653

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.34  E-value=2.3e-12  Score=90.34  Aligned_cols=94  Identities=16%  Similarity=0.028  Sum_probs=65.7

Q ss_pred             HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcc
Q psy2792          10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSV   89 (173)
Q Consensus        10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa   89 (173)
                      ...++..+|+++++.|.+...... ...|+..+...    ++|+|+|+||+|+.+..  ..+...++.+.....++++||
T Consensus        74 ~~~~~~~ad~i~~~~~~~~~~~~~-~~~~~~~l~~~----~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSA  146 (171)
T d1mkya1          74 TLNMIREADLVLFVVDGKRGITKE-DESLADFLRKS----TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSA  146 (171)
T ss_dssp             HHHHHTTCSEEEEEEETTTCCCHH-HHHHHHHHHHH----TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBT
T ss_pred             cccccccCcEEEEeeccccccccc-ccccccccccc----cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEec
Confidence            344578999999999987654333 24455555543    48999999999986321  122223333333456799999


Q ss_pred             cCCcccHHHHHHHHHHHHhcCC
Q psy2792          90 ADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        90 k~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      ++|. ||++++++|.+.+.+..
T Consensus       147 k~g~-gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         147 EHNI-NLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             TTTB-SHHHHHHHHHHHHHHTT
T ss_pred             CCCC-CHHHHHHHHHHhCCCCC
Confidence            9999 99999999999887643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=2e-12  Score=92.47  Aligned_cols=107  Identities=13%  Similarity=0.090  Sum_probs=71.8

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhh----------HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCc---
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKES----------FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLR---   66 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s----------~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~---   66 (173)
                      |+|++..  .+..|+++++++++|||.++..+          ++....|+..+.+.....++|++|||||+|+.+..   
T Consensus        51 ~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~  130 (200)
T d1zcba2          51 VGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQV  130 (200)
T ss_dssp             ECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTT
T ss_pred             ccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccc
Confidence            6899874  88999999999999999998543          45555566666554434789999999999974210   


Q ss_pred             -------------cCCHHHHHHHhhh-----------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          67 -------------QVDESLGRSTAVK-----------YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        67 -------------~v~~~~~~~~~~~-----------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                   .-..+.+.++...           ..+.+++|||+++. ||+++|+.+.+.|.+
T Consensus       131 ~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~-ni~~vf~~v~d~i~~  196 (200)
T d1zcba2         131 VSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE-NIRLVFRDVKDTILH  196 (200)
T ss_dssp             CCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH-HHHHHHHHHHHHHHH
T ss_pred             cHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcH-HHHHHHHHHHHHHHH
Confidence                         0112223322111           12456789999999 999999999887765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.18  E-value=3.2e-11  Score=85.27  Aligned_cols=102  Identities=14%  Similarity=0.133  Sum_probs=66.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~   77 (173)
                      |+|..++  .+...+..+|++++|+|.++.........| ..+..    .++|+++|.||+|+.......  .+....+.
T Consensus        66 ~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~----~~~p~iiv~NKiD~~~~~~~~~~~~~~~~~~  140 (179)
T d1wb1a4          66 APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH----FNIPIIVVITKSDNAGTEEIKRTEMIMKSIL  140 (179)
T ss_dssp             CSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCBCEEEECTTSSCHHHHHHHHHHHHHHH
T ss_pred             cccccccccchhhhhhhccccccccccccccchhhhhhh-hhhhh----cCCcceeccccccccCHHHHHHHHHHHHHHH
Confidence            4555443  445678899999999999875332222222 22333    468999999999986532211  11112222


Q ss_pred             hh----cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VK----YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~----~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      +.    .+.++++|||++|. |+++|++.|++.+.+
T Consensus       141 ~~~~~~~~~~iv~iSA~~g~-gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         141 QSTHNLKNSSIIPISAKTGF-GVDELKNLIITTLNN  175 (179)
T ss_dssp             HHSSSGGGCCEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             HHhhcCCCCeEEEEEccCCc-CHHHHHHHHHhcCCc
Confidence            21    13578999999999 999999999988865

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=2.2e-10  Score=78.86  Aligned_cols=83  Identities=13%  Similarity=0.050  Sum_probs=59.5

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCC
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADN   92 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g   92 (173)
                      .+.++|++++|+|.+++...+....+.     ..  ...++++++||+|+.+..  ..++..... ..+.+++++||++|
T Consensus        77 ~~~~ad~ii~v~d~~~~~~~~~~~~~~-----~~--~~~~~i~~~~k~d~~~~~--~~~~~~~~~-~~~~~~~~vSA~~g  146 (160)
T d1xzpa2          77 EIEKADIVLFVLDASSPLDEEDRKILE-----RI--KNKRYLVVINKVDVVEKI--NEEEIKNKL-GTDRHMVKISALKG  146 (160)
T ss_dssp             HHHHCSEEEEEEETTSCCCHHHHHHHH-----HH--TTSSEEEEEEECSSCCCC--CHHHHHHHH-TCSTTEEEEEGGGT
T ss_pred             HHHhCCEEEEEEeCCCCcchhhhhhhh-----hc--ccccceeeeeeccccchh--hhHHHHHHh-CCCCcEEEEECCCC
Confidence            478999999999999876654433221     11  457899999999987532  233332222 23467999999999


Q ss_pred             cccHHHHHHHHHHH
Q psy2792          93 SPAIYQAFDHLLTE  106 (173)
Q Consensus        93 ~~~v~~lf~~l~~~  106 (173)
                      . ||++|+++|.++
T Consensus       147 ~-gi~~L~~~I~ke  159 (160)
T d1xzpa2         147 E-GLEKLEESIYRE  159 (160)
T ss_dssp             C-CHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHhc
Confidence            9 999999998763

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=2.8e-10  Score=80.31  Aligned_cols=93  Identities=15%  Similarity=0.020  Sum_probs=63.6

Q ss_pred             cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhh----c-CCe
Q psy2792           9 TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVK----Y-NCT   83 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~----~-~~~   83 (173)
                      ....+++.+|++++|+|...... +....|+..+..    .+.|+|+|+||+|+.........+.......    . ..+
T Consensus        84 ~~~~~~~~~dvii~v~d~~~~~~-~~~~~~~~~~~~----~~~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (186)
T d1mkya2          84 RVVDSIEKADVVVIVLDATQGIT-RQDQRMAGLMER----RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSP  158 (186)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCCC-HHHHHHHHHHHH----TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSC
T ss_pred             HHHHHHhcCCEEEEeecccccch-hhHHHHHHHHHH----cCCceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCe
Confidence            44556789999999999976432 222334444444    4589999999999865444333333322221    2 356


Q ss_pred             EEEEcccCCcccHHHHHHHHHHHH
Q psy2792          84 FHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        84 ~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ++++||++|. ||++|+++|.+.+
T Consensus       159 i~~vSa~~g~-gv~~L~~~i~~~~  181 (186)
T d1mkya2         159 LIFTSADKGW-NIDRMIDAMNLAY  181 (186)
T ss_dssp             EEECBTTTTB-SHHHHHHHHHHHH
T ss_pred             EEEEeCCCCC-CHHHHHHHHHHHH
Confidence            8999999999 9999999996654

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=1.7e-10  Score=82.23  Aligned_cols=89  Identities=13%  Similarity=0.083  Sum_probs=60.6

Q ss_pred             hhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHH----HhhhcCCeEEEE
Q psy2792          12 AMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRS----TAVKYNCTFHEV   87 (173)
Q Consensus        12 ~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~----~~~~~~~~~~e~   87 (173)
                      .++..+|++++|+|.+.... .....++..+..    .++|+++|+||+|+.+..... +....    +.......++.+
T Consensus       101 ~~~~~~~~vi~viD~~~~~~-~~~~~~~~~l~~----~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  174 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPS-NDDVQMYEFLKY----YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILF  174 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCC-HHHHHHHHHHHH----TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEEC
T ss_pred             ccccchhhhhhhhhcccccc-cccccccccccc----ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEE
Confidence            34567899999999976432 122344455554    358999999999986433321 22222    222244679999


Q ss_pred             cccCCcccHHHHHHHHHHHH
Q psy2792          88 SVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        88 Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ||++|. |++++|++|.+.+
T Consensus       175 SA~~~~-gi~el~~~i~~~l  193 (195)
T d1svia_         175 SSETKK-GKDEAWGAIKKMI  193 (195)
T ss_dssp             CTTTCT-THHHHHHHHHHHH
T ss_pred             eCCCCC-CHHHHHHHHHHHh
Confidence            999999 9999999998876

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=5.6e-11  Score=86.83  Aligned_cols=107  Identities=15%  Similarity=0.132  Sum_probs=71.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChh----------hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc--
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE----------SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ--   67 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~----------s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~--   67 (173)
                      ++||+..  .+..|+++++++++|+|+++.+          .+.+...++..+.......++|++|+|||+||.+.+.  
T Consensus        54 ~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~k~~~  133 (221)
T d1azta2          54 VGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAEKVLA  133 (221)
T ss_dssp             CCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHHHHHH
T ss_pred             cCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhhhhcc
Confidence            6788873  8999999999999999998643          2333333334444433346899999999999843211  


Q ss_pred             --CC--------------------------HHHHHHH-----hh---h-----cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          68 --VD--------------------------ESLGRST-----AV---K-----YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        68 --v~--------------------------~~~~~~~-----~~---~-----~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                        +.                          ..++..+     ..   .     ..+.++++||+++. ||+.+|..+.+.
T Consensus       134 ~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~~~~y~h~T~A~Dt~-ni~~vf~~v~d~  212 (221)
T d1azta2         134 GKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTE-NIRRVFNDCRDI  212 (221)
T ss_dssp             CSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTSCCEEEEECCTTCHH-HHHHHHHTTHHH
T ss_pred             CcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCCCceeeeecceeccH-HHHHHHHHHHHH
Confidence              00                          1112221     11   1     12335689999999 999999998877


Q ss_pred             Hhc
Q psy2792         107 SRG  109 (173)
Q Consensus       107 i~~  109 (173)
                      |++
T Consensus       213 I~~  215 (221)
T d1azta2         213 IQR  215 (221)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            765

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.05  E-value=5.5e-10  Score=78.45  Aligned_cols=91  Identities=18%  Similarity=0.088  Sum_probs=59.7

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHH----------HHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAV----------STLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY   80 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~----------~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~   80 (173)
                      ..+++.+|++++|+|.+.........          ..+..+..    .++|+++|+||+|+.+..+   .....+....
T Consensus        76 ~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~----~~~p~iiv~NK~D~~~~~~---~~~~~~~~~~  148 (184)
T d2cxxa1          76 EDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE----LDIPTIVAVNKLDKIKNVQ---EVINFLAEKF  148 (184)
T ss_dssp             HHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH----TTCCEEEEEECGGGCSCHH---HHHHHHHHHH
T ss_pred             hhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH----cCCCEEEEEeeeehhhhHH---HHHHHHHHHh
Confidence            34567899999999997653322111          12222322    4689999999999754322   1112222221


Q ss_pred             -------CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          81 -------NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        81 -------~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                             ...++++||++|. ||++|+++|.+.+.+
T Consensus       149 ~~~~~~~~~~~~~vSA~~g~-gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         149 EVPLSEIDKVFIPISAKFGD-NIERLKNRIFEVIRE  183 (184)
T ss_dssp             TCCGGGHHHHEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cccccccCCeEEEEECCCCC-CHHHHHHHHHHHccC
Confidence                   1238899999999 999999999998875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=3e-10  Score=79.53  Aligned_cols=96  Identities=15%  Similarity=-0.014  Sum_probs=67.7

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC-CeEEEEcccC
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN-CTFHEVSVAD   91 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~-~~~~e~Sak~   91 (173)
                      +...+|+++++.|..+..  .....+...+.+    ...|+++|.||.|+.............+...++ .+++++||++
T Consensus        82 ~~~~~~~~l~~~d~~~~~--~~~~~~~~~l~~----~~~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~  155 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWT--PDDEMVLNKLRE----GKAPVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAET  155 (179)
T ss_dssp             CCCCEEEEEEEEETTCCC--HHHHHHHHHHHS----SSSCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred             chhhcceeEEEEecCccc--hhHHHHHHHhhh----ccCceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcC
Confidence            455788888999877642  222333333433    457899999999986543322344455555565 5799999999


Q ss_pred             CcccHHHHHHHHHHHHhcCCCCCc
Q psy2792          92 NSPAIYQAFDHLLTESRGGPPSGI  115 (173)
Q Consensus        92 g~~~v~~lf~~l~~~i~~~~~~~~  115 (173)
                      |. |+++|++.|.+.+.+.+..||
T Consensus       156 g~-gi~~L~~~i~~~lpe~~~~yp  178 (179)
T d1egaa1         156 GL-NVDTIAAIVRKHLPEATHHFP  178 (179)
T ss_dssp             TT-THHHHHHHHHTTCCBCCCSSC
T ss_pred             CC-CHHHHHHHHHHhCCCCCCCCC
Confidence            99 999999999999888776665

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=1.4e-09  Score=78.03  Aligned_cols=65  Identities=14%  Similarity=0.067  Sum_probs=46.5

Q ss_pred             CCCCCCc---cHhhhcccCcEEEEEEeCCChhhH-HHHHHHHHHHH-hhh-CCCCCcEEEEEeCCCCCCCc
Q psy2792           2 TIGLTEG---TLTAMICWADGCIIVYSLIDKESF-DYAVSTLQNLQ-RHR-AVNNVPVMLLANKLDLEHLR   66 (173)
Q Consensus         2 TaG~e~~---~~~~y~~~ad~iilv~d~~~~~s~-~~~~~~~~~i~-~~~-~~~~~piilv~NK~Dl~~~~   66 (173)
                      |+|+++.   .+..|+..+|++++|||+++..++ .....|+..+. ... ....+|++||+||+|+....
T Consensus        54 ~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1          54 LPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             CCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred             ccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCC
Confidence            5677652   677889999999999999997764 44445544443 222 12568999999999997543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.97  E-value=9.4e-10  Score=80.49  Aligned_cols=102  Identities=18%  Similarity=0.102  Sum_probs=65.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCH---------
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDE---------   70 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~---------   70 (173)
                      |||.+++  .+...+..||++|+|+|+.+.-.-.. ...+..+..    .++|+|+|.||+|+........         
T Consensus        77 tPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~-~~~~~~~~~----~~~p~iivlNK~D~~~~~~~~~~~~~~~~~~  151 (227)
T d1g7sa4          77 TPGHEAFTTLRKRGGALADLAILIVDINEGFKPQT-QEALNILRM----YRTPFVVAANKIDRIHGWRVHEGRPFMETFS  151 (227)
T ss_dssp             CCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHH-HHHHHHHHH----TTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred             ccceecccccchhcccccceEEEEEecccCcccch-hHHHHHhhc----CCCeEEEEEECccCCCchhhhhhHHHHHhhh
Confidence            8898875  44456889999999999987422222 222333333    4589999999999864322110         


Q ss_pred             -----------HHH----HHHhhh--------------cCCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          71 -----------SLG----RSTAVK--------------YNCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        71 -----------~~~----~~~~~~--------------~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                                 ...    ..+...              ...+++.+||++|. |+++|++.|.....+
T Consensus       152 ~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~-gid~Ll~~l~~l~~~  218 (227)
T d1g7sa4         152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE-GIPELLTMLMGLAQQ  218 (227)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT-THHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCC-CHHHHHHHHHHHHHH
Confidence                       000    001110              01358999999999 999999988876543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.87  E-value=1.5e-09  Score=78.09  Aligned_cols=104  Identities=13%  Similarity=0.039  Sum_probs=63.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~   77 (173)
                      |+|..++  ....-+..||++|+|+|..+.-.-.....-+..+...   .-.|+||+.||+|+.+.....  ..+...+.
T Consensus        93 ~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~---~i~~iIV~vNK~Dl~~~~~~~~~~~~~~~~l  169 (205)
T d2qn6a3          93 APGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII---GVKNLIIVQNKVDVVSKEEALSQYRQIKQFT  169 (205)
T ss_dssp             CSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHc---CCceeeeccccCCCccchHHHHHHHHHHHHh
Confidence            5566554  2223367899999999997741111112212222222   224889999999996532211  11122222


Q ss_pred             hhc---CCeEEEEcccCCcccHHHHHHHHHHHHhc
Q psy2792          78 VKY---NCTFHEVSVADNSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        78 ~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i~~  109 (173)
                      ...   +++++.+||++|. ||++|++.|...+.+
T Consensus       170 ~~~~~~~~p~ipiSA~~g~-nI~~L~e~i~~~ip~  203 (205)
T d2qn6a3         170 KGTWAENVPIIPVSALHKI-NIDSLIEGIEEYIKT  203 (205)
T ss_dssp             TTSTTTTCCEEECBTTTTB-SHHHHHHHHHHHSCC
T ss_pred             ccccCCCCeEEEEeCCCCC-ChHHHHHHHHhhCCC
Confidence            222   3678999999999 999999999887654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.87  E-value=9.4e-10  Score=77.55  Aligned_cols=94  Identities=15%  Similarity=0.129  Sum_probs=61.0

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHH---HHHHHHHhh-hCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhc--CCeEEE
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAV---STLQNLQRH-RAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKY--NCTFHE   86 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~---~~~~~i~~~-~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~--~~~~~e   86 (173)
                      ++..++.++++++...........   .+....... ....++|+++|+||+|+.+..    +....+.+..  +.+++.
T Consensus        76 ~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~----~~~~~~~~~~~~~~~v~~  151 (185)
T d1lnza2          76 HIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA----ENLEAFKEKLTDDYPVFP  151 (185)
T ss_dssp             HHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH----HHHHHHHHHCCSCCCBCC
T ss_pred             HHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH----HHHHHHHHHhccCCcEEE
Confidence            456799999988776543322221   121111111 112468999999999996532    2233333333  577899


Q ss_pred             EcccCCcccHHHHHHHHHHHHhcCC
Q psy2792          87 VSVADNSPAIYQAFDHLLTESRGGP  111 (173)
Q Consensus        87 ~Sak~g~~~v~~lf~~l~~~i~~~~  111 (173)
                      +||++|. ||++|+..|.+.+.+.+
T Consensus       152 iSA~~g~-Gi~~L~~~i~~~L~~~p  175 (185)
T d1lnza2         152 ISAVTRE-GLRELLFEVANQLENTP  175 (185)
T ss_dssp             CSSCCSS-TTHHHHHHHHHHHTSCC
T ss_pred             EECCCCC-CHHHHHHHHHHhhhhCC
Confidence            9999999 99999999999886543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=98.85  E-value=2.1e-09  Score=76.61  Aligned_cols=102  Identities=16%  Similarity=0.061  Sum_probs=64.0

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA   77 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~   77 (173)
                      |+|.+++  ....-+..+|++++|.|..+..........+..+...   ...++|+|.||+|+.+.....  ......+.
T Consensus        85 tPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~---~~~~iiv~inK~D~~d~~~~~~~~~~~~~~~  161 (195)
T d1kk1a3          85 APGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII---GQKNIIIAQNKIELVDKEKALENYRQIKEFI  161 (195)
T ss_dssp             CSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH---TCCCEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHh---cCccceeeeecccchhhHHHHHHHHHHHHHh
Confidence            5676664  2333467899999999998742122222222233332   224588899999986532211  12233333


Q ss_pred             hhc---CCeEEEEcccCCcccHHHHHHHHHHHH
Q psy2792          78 VKY---NCTFHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        78 ~~~---~~~~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ...   .++++++||++|. |+++|++.+.+.+
T Consensus       162 ~~~~~~~~~iIpiSA~~G~-ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         162 EGTVAENAPIIPISALHGA-NIDVLVKAIEDFI  193 (195)
T ss_dssp             TTSTTTTCCEEECBTTTTB-SHHHHHHHHHHHS
T ss_pred             ccccCCCCeEEEEECCCCC-CHHHHHHHHHHHC
Confidence            333   2578999999999 9999999988765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.69  E-value=1.9e-08  Score=73.16  Aligned_cols=84  Identities=18%  Similarity=0.090  Sum_probs=61.4

Q ss_pred             hcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh--hcCCeEEEEcc
Q psy2792          13 MICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV--KYNCTFHEVSV   89 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~--~~~~~~~e~Sa   89 (173)
                      -..|.|.+++|+++.+|+ +...++.|+-.+..    .+++.+||.||+||.+...  .+....+..  ..++.++.+||
T Consensus         7 ~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~----~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           7 HVANVDQVILVVTVKMPETSTYIIDKFLVLAEK----NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH----TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCT
T ss_pred             CcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH----cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEecc
Confidence            457999999999998865 56677777766655    4699999999999964321  112222222  23477899999


Q ss_pred             cCCcccHHHHHHHH
Q psy2792          90 ADNSPAIYQAFDHL  103 (173)
Q Consensus        90 k~g~~~v~~lf~~l  103 (173)
                      +++. |++++...+
T Consensus        81 ~~~~-g~~~L~~~l   93 (225)
T d1u0la2          81 KTGM-GIEELKEYL   93 (225)
T ss_dssp             TTCT-THHHHHHHH
T ss_pred             ccch-hHhhHHHHh
Confidence            9999 999987765

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=98.47  E-value=8.8e-08  Score=68.34  Aligned_cols=102  Identities=17%  Similarity=0.093  Sum_probs=63.5

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC---HHHHHHH
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD---ESLGRST   76 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~---~~~~~~~   76 (173)
                      |+|.+++  -...-+..+|++|+|+|.++-- +++....+..+...   ...|+|++.||.|+....+.-   ..+...+
T Consensus        73 tPGh~~f~~~~~~~~~~aD~allVVda~~G~-~~QT~~~~~~a~~~---~~~~iIv~iNK~D~~~~~~~~~~i~~~i~~~  148 (196)
T d1d2ea3          73 CPGHADYVKNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQI---GVEHVVVYVNKADAVQDSEMVELVELEIREL  148 (196)
T ss_dssp             CSSHHHHHHHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHT---TCCCEEEEEECGGGCSCHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHhhcCeEEEEEEcCCCC-chhHHHHHHHHHHh---cCCcEEEEEecccccccHHHHHHHHHHHHHH
Confidence            6777664  2233477899999999998732 22223333333332   235789999999986432211   1123334


Q ss_pred             hhhcC-----CeEEEEcccCC----------cccHHHHHHHHHHHHh
Q psy2792          77 AVKYN-----CTFHEVSVADN----------SPAIYQAFDHLLTESR  108 (173)
Q Consensus        77 ~~~~~-----~~~~e~Sak~g----------~~~v~~lf~~l~~~i~  108 (173)
                      ....+     ++++.+||++|          . ++.+|++.|.+.+.
T Consensus       149 l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~-~~~~Lldai~~~iP  194 (196)
T d1d2ea3         149 LTEFGYKGEETPIIVGSALCALEQRDPELGLK-SVQKLLDAVDTYIP  194 (196)
T ss_dssp             HHHTTSCTTTSCEEECCHHHHHTTCCTTTTHH-HHHHHHHHHHHHSC
T ss_pred             HHHhCCCcccCEEEEEEccccccccCcccccC-CHHHHHHHHHhhCC
Confidence            33333     56899999988          6 88899988876543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.41  E-value=4e-08  Score=71.68  Aligned_cols=85  Identities=18%  Similarity=0.227  Sum_probs=61.2

Q ss_pred             hcccCcEEEEEEeCCChh-hHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHH---HHhhhcCCeEEEEc
Q psy2792          13 MICWADGCIIVYSLIDKE-SFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGR---STAVKYNCTFHEVS   88 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~-s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~---~~~~~~~~~~~e~S   88 (173)
                      -..|.|.+++|+++.+|+ ++..++.++-....    .+++.+||.||+||.+..+. .+...   ......|++++.+|
T Consensus         7 ~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~----~~i~pvIvlnK~DL~~~~~~-~~~~~~~~~~y~~~g~~v~~~S   81 (231)
T d1t9ha2           7 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA----NDIQPIICITKMDLIEDQDT-EDTIQAYAEDYRNIGYDVYLTS   81 (231)
T ss_dssp             TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT----TTCEEEEEEECGGGCCCHHH-HHHHHHHHHHHHHHTCCEEECC
T ss_pred             CccccCEEEEEEECCCCCCCHHHHHHHHHHHHH----cCCCEEEEEecccccccHHH-HHHHHHHHHHHhhccccceeee
Confidence            357999999999998875 67777777766554    56999999999999653221 11222   23345689999999


Q ss_pred             ccCCcccHHHHHHHH
Q psy2792          89 VADNSPAIYQAFDHL  103 (173)
Q Consensus        89 ak~g~~~v~~lf~~l  103 (173)
                      |+++. |++++...|
T Consensus        82 a~~~~-gl~~L~~~l   95 (231)
T d1t9ha2          82 SKDQD-SLADIIPHF   95 (231)
T ss_dssp             HHHHT-TCTTTGGGG
T ss_pred             cCChh-HHHHHHHhh
Confidence            99988 887766543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=3.4e-07  Score=68.34  Aligned_cols=88  Identities=11%  Similarity=0.024  Sum_probs=59.7

Q ss_pred             hhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEccc
Q psy2792          11 TAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVA   90 (173)
Q Consensus        11 ~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak   90 (173)
                      ...+..+|+||+|.|.-+|.+..+  .+++++.     .+.|+|+|.||+||.+... ..+ ..++....+..++.+||+
T Consensus        10 ~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~-----~~Kp~IlVlNK~DLv~~~~-~~~-w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_          10 TEKLKLIDIVYELVDARIPMSSRN--PMIEDIL-----KNKPRIMLLNKADKADAAV-TQQ-WKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC-----SSSCEEEEEECGGGSCHHH-HHH-HHHHHHTTTCCEEECCTT
T ss_pred             HHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH-----cCCCeEEEEECccCCchHH-HHH-HHHHHHhcCCccceeecc
Confidence            457899999999999988865432  2233332     3579999999999965321 112 222334456778999999


Q ss_pred             CCcccHHHHHHHHHHHHh
Q psy2792          91 DNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        91 ~g~~~v~~lf~~l~~~i~  108 (173)
                      ++. ++.++...+.+.+.
T Consensus        81 ~~~-~~~~~~~~~~~~l~   97 (273)
T d1puja_          81 NGQ-GLNQIVPASKEILQ   97 (273)
T ss_dssp             TCT-TGGGHHHHHHHHHH
T ss_pred             cCC-Cccccchhhhhhhh
Confidence            998 87777666655444

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=98.11  E-value=3.6e-06  Score=60.83  Aligned_cols=90  Identities=14%  Similarity=0.018  Sum_probs=54.5

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCH----HHHH
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDE----SLGR   74 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~----~~~~   74 (173)
                      |+|.+++.  ...-...+|++|+|+|+.+--.-+..+.| ..+..    .+++ +|++.||.|+.+..+-..    .+..
T Consensus        96 ~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~-~~~~~----~gv~~iiv~vNK~D~~~~~~~~~~~~~~~l~  170 (222)
T d1zunb3          96 TPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHS-YIASL----LGIKHIVVAINKMDLNGFDERVFESIKADYL  170 (222)
T ss_dssp             CCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHH-HHHHH----TTCCEEEEEEECTTTTTSCHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhccccccCceEEEEeccccCcccchHHHH-HHHHH----cCCCEEEEEEEccccccccceehhhhHHHHh
Confidence            68887762  23347789999999999873211111112 12222    2455 788999999975322111    1233


Q ss_pred             HHhhhcC-----CeEEEEcccCCcccHH
Q psy2792          75 STAVKYN-----CTFHEVSVADNSPAIY   97 (173)
Q Consensus        75 ~~~~~~~-----~~~~e~Sak~g~~~v~   97 (173)
                      .+....+     +.|+.+||++|. ||.
T Consensus       171 ~~~~~~~~~~~~i~~IPiSA~~G~-ni~  197 (222)
T d1zunb3         171 KFAEGIAFKPTTMAFVPMSALKGD-NVV  197 (222)
T ss_dssp             HHHHTTTCCCSEEEEEECCTTTCT-TTS
T ss_pred             hhhHhhccCCCceEEEEEEcccCc-cCC
Confidence            4444443     357899999999 884

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.07  E-value=2e-06  Score=61.44  Aligned_cols=86  Identities=19%  Similarity=0.130  Sum_probs=51.6

Q ss_pred             CCCCCCcc--HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCC---HHHHHH
Q psy2792           2 TIGLTEGT--LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVD---ESLGRS   75 (173)
Q Consensus         2 TaG~e~~~--~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~---~~~~~~   75 (173)
                      |||.+++.  ...-+..||++|+|+|+++--..+..+.| ..+..    .++| +|++.||.|+.+..+.-   .++...
T Consensus        74 tPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~-~~~~~----~gi~~iiv~iNK~D~~~~~~~~~~~~~~i~~  148 (204)
T d2c78a3          74 CPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHI-LLARQ----VGVPYIVVFMNKVDMVDDPELLDLVEMEVRD  148 (204)
T ss_dssp             CCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHH-HHHHH----TTCCCEEEEEECGGGCCCHHHHHHHHHHHHH
T ss_pred             CCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHH-HHHHH----cCCCeEEEEEEecccCCCHHHHHHHHHHHHH
Confidence            88998863  33457889999999999875433333333 33333    3466 67789999986422110   122233


Q ss_pred             HhhhcC-----CeEEEEcccCC
Q psy2792          76 TAVKYN-----CTFHEVSVADN   92 (173)
Q Consensus        76 ~~~~~~-----~~~~e~Sak~g   92 (173)
                      +....+     +.++.+||..+
T Consensus       149 ~l~~~~~~~~~i~~i~~sa~~~  170 (204)
T d2c78a3         149 LLNQYEFPGDEVPVIRGSALLA  170 (204)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHH
T ss_pred             HHHhcCCCcccceeeeeechhh
Confidence            333322     55888888754

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.07  E-value=6.3e-06  Score=56.72  Aligned_cols=85  Identities=13%  Similarity=0.127  Sum_probs=50.4

Q ss_pred             CcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHhhhc--CCeEEEEcccCC
Q psy2792          17 ADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTAVKY--NCTFHEVSVADN   92 (173)
Q Consensus        17 ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~~~~--~~~~~e~Sak~g   92 (173)
                      ++.++++.+..... ......++..+..    ...++++|+||+|+.+.....  .+...+.....  ...++.+||++|
T Consensus        99 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g  173 (188)
T d1puia_          99 LQGLVVLMDIRHPL-KDLDQQMIEWAVD----SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKK  173 (188)
T ss_dssp             EEEEEEEEETTSCC-CHHHHHHHHHHHH----TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTT
T ss_pred             eeEEEEeecccccc-hhHHHHHHHHhhh----ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCC
Confidence            34455555554432 2222344444444    357899999999986432211  11112222222  256899999999


Q ss_pred             cccHHHHHHHHHHHH
Q psy2792          93 SPAIYQAFDHLLTES  107 (173)
Q Consensus        93 ~~~v~~lf~~l~~~i  107 (173)
                      . ||++|++.|.+.+
T Consensus       174 ~-Gid~L~~~i~~~~  187 (188)
T d1puia_         174 Q-GVDKLRQKLDTWF  187 (188)
T ss_dssp             B-SHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHh
Confidence            9 9999999987643

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.91  E-value=1.2e-05  Score=56.52  Aligned_cols=64  Identities=14%  Similarity=0.164  Sum_probs=43.3

Q ss_pred             CCCCCCc--cHhh----hcccCcEEEEEEeCCC-hhhHHHHHHHHHHHH---hhhCCCCCcEEEEEeCCCCCCC
Q psy2792           2 TIGLTEG--TLTA----MICWADGCIIVYSLID-KESFDYAVSTLQNLQ---RHRAVNNVPVMLLANKLDLEHL   65 (173)
Q Consensus         2 TaG~e~~--~~~~----y~~~ad~iilv~d~~~-~~s~~~~~~~~~~i~---~~~~~~~~piilv~NK~Dl~~~   65 (173)
                      |+|++..  ....    ++..++.+++++|..+ ..+++.+..|+..+.   +.....++|+++|+||+|+.+.
T Consensus        53 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~  126 (209)
T d1nrjb_          53 FPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  126 (209)
T ss_dssp             CCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             cccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeccccc
Confidence            6788762  3333    3456688888888664 567777777664433   2222468999999999999753

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.81  E-value=0.0001  Score=54.64  Aligned_cols=56  Identities=20%  Similarity=0.246  Sum_probs=41.1

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL   62 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl   62 (173)
                      |+|..++  -...-++-+|++|+|+|..+--.-.....| ....+    .++|.|++.||.|.
T Consensus        78 tPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w-~~a~~----~~lP~i~fINKmDr  135 (276)
T d2bv3a2          78 APGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW-RQAEK----YKVPRIAFANKMDK  135 (276)
T ss_dssp             CCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHH-HHHHT----TTCCEEEEEECTTS
T ss_pred             CCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHH-HHHHH----cCCCEEEEEecccc
Confidence            8999886  445568899999999999885333333444 23333    56999999999997

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.77  E-value=2.9e-05  Score=55.80  Aligned_cols=92  Identities=16%  Similarity=0.102  Sum_probs=53.7

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC--CH-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE---SF---DYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV--DE-   70 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~---s~---~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v--~~-   70 (173)
                      |+|..++  -...-++-+|++|+|+|+.+-.   ++   .+..+-+..... .  .-.++|++.||.|+......  .. 
T Consensus        88 tPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~-~--~~~~iIv~iNK~D~~~~~~~~~~~~  164 (224)
T d1jnya3          88 APGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKT-M--GLDQLIVAVNKMDLTEPPYDEKRYK  164 (224)
T ss_dssp             CSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHH-T--TCTTCEEEEECGGGSSSTTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHH-h--CCCceEEEEEcccCCCccccHHHHH
Confidence            7899886  3445577899999999998731   11   111111111111 1  23468889999998632110  01 


Q ss_pred             ---HHHHHHhhhc-----CCeEEEEcccCCcccHH
Q psy2792          71 ---SLGRSTAVKY-----NCTFHEVSVADNSPAIY   97 (173)
Q Consensus        71 ---~~~~~~~~~~-----~~~~~e~Sak~g~~~v~   97 (173)
                         .+...+...+     .+.++.+||..|. ||.
T Consensus       165 ~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~-NV~  198 (224)
T d1jnya3         165 EIVDQVSKFMRSYGFNTNKVRFVPVVAPSGD-NIT  198 (224)
T ss_dssp             HHHHHHHHHHHHTTCCCTTCEEEECBTTTTB-TTT
T ss_pred             HHHHHHHhHHHhcCCCcccCeEEEEEccCCC-Ccc
Confidence               1222333333     2568899999999 875

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.73  E-value=3.2e-05  Score=56.49  Aligned_cols=94  Identities=15%  Similarity=0.120  Sum_probs=49.4

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCHH-
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKE---SFD---YAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDES-   71 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~---s~~---~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~~-   71 (173)
                      |+|..++  ....-..-+|++|+|+|+.+-.   +++   +...-+..+..    .+++ ++++.||.|+..... ..+ 
T Consensus       109 tPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~----~~i~~iiv~iNKmD~~~~~~-~e~~  183 (245)
T d1r5ba3         109 APGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART----QGINHLVVVINKMDEPSVQW-SEER  183 (245)
T ss_dssp             CCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH----TTCSSEEEEEECTTSTTCSS-CHHH
T ss_pred             ccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH----cCCCeEEEEEEcCCCCccch-hHHH
Confidence            6788775  3333467899999999997631   111   11121222222    2354 789999999863211 111 


Q ss_pred             --H----HHHHhhhc-------CCeEEEEcccCCcccHHHHHH
Q psy2792          72 --L----GRSTAVKY-------NCTFHEVSVADNSPAIYQAFD  101 (173)
Q Consensus        72 --~----~~~~~~~~-------~~~~~e~Sak~g~~~v~~lf~  101 (173)
                        +    ...+....       .++++.+||++|+ ||.++++
T Consensus       184 ~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~-nI~~~~~  225 (245)
T d1r5ba3         184 YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQ-NVKDRVD  225 (245)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTB-TTSSCCC
T ss_pred             HHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCC-Ccccchh
Confidence              1    11121221       2568999999999 9976544

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.69  E-value=0.00017  Score=51.42  Aligned_cols=87  Identities=6%  Similarity=-0.079  Sum_probs=52.1

Q ss_pred             cCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHH--------------------
Q psy2792          16 WADGCIIVYSLI---DKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESL--------------------   72 (173)
Q Consensus        16 ~ad~iilv~d~~---~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~--------------------   72 (173)
                      ..++++++.|..   ++..+.........+...   -..|.++|.||+|+..........                    
T Consensus       123 ~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~---~~~~~ivvinK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (244)
T d1yrba1         123 PYPLVVYISDPEILKKPNDYCFVRFFALLIDLR---LGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQ  199 (244)
T ss_dssp             SSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH---HTSCEEEEECCGGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHH
T ss_pred             cCceEEEEeccccccCchhHhhHHHHHHHHHHH---hCCCceeeeeccccccHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            466899999864   444443332222222222   358999999999986432110000                    


Q ss_pred             ---HHH---Hhhh--cCCeEEEEcccCCcccHHHHHHHHHHH
Q psy2792          73 ---GRS---TAVK--YNCTFHEVSVADNSPAIYQAFDHLLTE  106 (173)
Q Consensus        73 ---~~~---~~~~--~~~~~~e~Sak~g~~~v~~lf~~l~~~  106 (173)
                         ...   ...+  ..++++.+||++|+ |+++++..|.+.
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~v~vSa~~ge-Gi~~L~~~l~e~  240 (244)
T d1yrba1         200 GLMAYKMCSMMTEVLPPVRVLYLSAKTRE-GFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHHHHHSCCCCCEECCTTTCT-THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCCcEEEEECCCCC-CHHHHHHHHHHH
Confidence               000   0111  23678999999999 999999988764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=97.56  E-value=0.00031  Score=51.72  Aligned_cols=56  Identities=18%  Similarity=0.159  Sum_probs=40.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDL   62 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl   62 (173)
                      |+|..++  -...-++-+|++|+|+|..+--.-.....|. .+.+    .++|.+++.||.|.
T Consensus        74 tPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~----~~~p~~i~iNk~D~  131 (267)
T d2dy1a2          74 APGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER----LGLPRMVVVTKLDK  131 (267)
T ss_dssp             CCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH----TTCCEEEEEECGGG
T ss_pred             cCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh----cccccccccccccc
Confidence            7888886  3445688999999999998753333334443 3333    45899999999996

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.51  E-value=7.6e-05  Score=56.63  Aligned_cols=86  Identities=7%  Similarity=0.022  Sum_probs=52.0

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhh----------hcCC
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAV----------KYNC   82 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~----------~~~~   82 (173)
                      ...-+|.+++|.....-+..+.+   ..-+.+      +.=++|.||+|+.+...........+..          .+..
T Consensus       161 ~~~~~D~~v~v~~p~~GD~iQ~~---k~gilE------~aDi~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p  231 (323)
T d2qm8a1         161 VADLTDFFLVLMLPGAGDELQGI---KKGIFE------LADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTP  231 (323)
T ss_dssp             HHTTSSEEEEEECSCC------C---CTTHHH------HCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCC
T ss_pred             hhcccceEEEEeeccchhhhhhh---hhhHhh------hhheeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCC
Confidence            34569999999998875443322   122222      3447899999986533222111111111          1345


Q ss_pred             eEEEEcccCCcccHHHHHHHHHHHHh
Q psy2792          83 TFHEVSVADNSPAIYQAFDHLLTESR  108 (173)
Q Consensus        83 ~~~e~Sak~g~~~v~~lf~~l~~~i~  108 (173)
                      +++.|||++|. |+++++++|.+...
T Consensus       232 ~V~~~Sa~~g~-Gi~el~~~I~~~~~  256 (323)
T d2qm8a1         232 PVVTISGLHGK-GLDSLWSRIEDHRS  256 (323)
T ss_dssp             CEEEEBTTTTB-SHHHHHHHHHHHHH
T ss_pred             ceEEEEecCCC-CHHHHHHHHHHHHH
Confidence            69999999999 99999999976543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=8e-05  Score=54.11  Aligned_cols=90  Identities=13%  Similarity=0.026  Sum_probs=54.5

Q ss_pred             CCCCCCccH--hhhcccCcEEEEEEeCCChhhHH--------HHHHHHHHHHhhhCCCCCc-EEEEEeCCCCCCCccCCH
Q psy2792           2 TIGLTEGTL--TAMICWADGCIIVYSLIDKESFD--------YAVSTLQNLQRHRAVNNVP-VMLLANKLDLEHLRQVDE   70 (173)
Q Consensus         2 TaG~e~~~~--~~y~~~ad~iilv~d~~~~~s~~--------~~~~~~~~i~~~~~~~~~p-iilv~NK~Dl~~~~~v~~   70 (173)
                      |+|..++..  ..-+..+|++|+|+|.+.- -|+        ..+.| ..+..    -++| +|++.||.|+.+...-..
T Consensus        91 tPGH~df~~~~~~g~~~~D~ailvvda~~G-~~e~g~~~~~QT~eh~-~~~~~----~gv~~iiv~iNKmD~~~~d~~~~  164 (239)
T d1f60a3          91 APGHRDFIKNMITGTSQADCAILIIAGGVG-EFEAGISKDGQTREHA-LLAFT----LGVRQLIVAVNKMDSVKWDESRF  164 (239)
T ss_dssp             CCCCTTHHHHHHHSSSCCSEEEEEEECSHH-HHHHHTCTTSHHHHHH-HHHHH----TTCCEEEEEEECGGGGTTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhCEEEEEEECCCC-ccccccCchHhHHHHH-HHHHH----cCCCeEEEEEECCCCCCCCHHHH
Confidence            788888633  3457889999999998753 121        11222 12222    2465 788999999864321111


Q ss_pred             ----HHHHHHhhhcC-----CeEEEEcccCCcccHHH
Q psy2792          71 ----SLGRSTAVKYN-----CTFHEVSVADNSPAIYQ   98 (173)
Q Consensus        71 ----~~~~~~~~~~~-----~~~~e~Sak~g~~~v~~   98 (173)
                          .+...+....+     +.++.+||..|. |+.+
T Consensus       165 ~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~-ni~~  200 (239)
T d1f60a3         165 QEIVKETSNFIKKVGYNPKTVPFVPISGWNGD-NMIE  200 (239)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGCCEEECCTTTCB-TTTB
T ss_pred             HHHHHHHHHHHHhcCCCCCcEEEEEEEccCCC-ccee
Confidence                22233444333     558999999999 8654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=0.00012  Score=55.66  Aligned_cols=85  Identities=13%  Similarity=0.071  Sum_probs=49.9

Q ss_pred             hcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCC--HHHHHHHh-------hhcCCe
Q psy2792          13 MICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVD--ESLGRSTA-------VKYNCT   83 (173)
Q Consensus        13 y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~--~~~~~~~~-------~~~~~~   83 (173)
                      +...+|.+++|.+...-   +++.....-+.+.      +=++|.||+|+.......  ..+.....       ..+..+
T Consensus       164 i~~~aD~~l~v~~P~~G---d~iq~~k~gi~e~------aDi~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~  234 (327)
T d2p67a1         164 VARMVDCFISLQIAGGG---DDLQGIKKGLMEV------ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPR  234 (327)
T ss_dssp             HHTTCSEEEEEECC---------CCCCHHHHHH------CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCE
T ss_pred             hhhccceEEEEecCCCc---hhhhhhchhhhcc------ccEEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcce
Confidence            56779999999876543   3332222333332      336888999986422111  11111111       123356


Q ss_pred             EEEEcccCCcccHHHHHHHHHHHH
Q psy2792          84 FHEVSVADNSPAIYQAFDHLLTES  107 (173)
Q Consensus        84 ~~e~Sak~g~~~v~~lf~~l~~~i  107 (173)
                      ++.|||++|. ||+++++.|.+..
T Consensus       235 V~~~SA~~g~-Gi~eL~~~I~~~~  257 (327)
T d2p67a1         235 VLTCSALEKR-GIDEIWHAIIDFK  257 (327)
T ss_dssp             EEECBGGGTB-SHHHHHHHHHHHH
T ss_pred             eEEEEeeCCC-CHHHHHHHHHHHH
Confidence            9999999999 9999999997654

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.90  E-value=0.00056  Score=52.08  Aligned_cols=57  Identities=19%  Similarity=0.234  Sum_probs=41.2

Q ss_pred             CCCCCCc--cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCC
Q psy2792           2 TIGLTEG--TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLE   63 (173)
Q Consensus         2 TaG~e~~--~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~   63 (173)
                      |+|..++  -...-++-+|++|+|+|+.+--.......|.. ...    .++|+|+|.||+|..
T Consensus       103 tPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~----~~~p~i~viNKiDr~  161 (341)
T d1n0ua2         103 SPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG----ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH----TTCEEEEEEECHHHH
T ss_pred             CCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH----cCCCeEEEEECcccc
Confidence            8899886  44456788999999999988544444344433 333    458999999999963

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.97  E-value=0.019  Score=44.12  Aligned_cols=100  Identities=12%  Similarity=0.029  Sum_probs=58.0

Q ss_pred             CCCCCCc-------cHhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCC-------Ccc
Q psy2792           2 TIGLTEG-------TLTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEH-------LRQ   67 (173)
Q Consensus         2 TaG~e~~-------~~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~-------~~~   67 (173)
                      |||....       +....+..+|++|++.|..-.+   ....++..+..    .+.|+++|.||+|...       ...
T Consensus       114 tPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~---~d~~l~~~l~~----~~k~~~~V~nK~D~~~~~~~~~~~~~  186 (400)
T d1tq4a_         114 LPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKK---NDIDIAKAISM----MKKEFYFVRTKVDSDITNEADGEPQT  186 (400)
T ss_dssp             CCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCCCH---HHHHHHHHHHH----TTCEEEEEECCHHHHHHHHHTTCCTT
T ss_pred             CCCcccccccHHHHHHHhhhhcceEEEEecCCCCCH---HHHHHHHHHHH----cCCCEEEEEeCcccccchhhhccccc
Confidence            7887651       3344467899999988754321   11234444554    3589999999999521       111


Q ss_pred             CCHHHH--------HHHhhhcC---CeEEEEcccC--CcccHHHHHHHHHHHHhc
Q psy2792          68 VDESLG--------RSTAVKYN---CTFHEVSVAD--NSPAIYQAFDHLLTESRG  109 (173)
Q Consensus        68 v~~~~~--------~~~~~~~~---~~~~e~Sak~--g~~~v~~lf~~l~~~i~~  109 (173)
                      ...+..        .......+   -++|.+|..+  .. ++.+|.+.+.+.+.+
T Consensus       187 ~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~-d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         187 FDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHY-DFPVLMDKLISDLPI  240 (400)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTST-THHHHHHHHHHHSCG
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCccccc-CHHHHHHHHHHHhHH
Confidence            112111        11122223   2378888764  45 788888888877655

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.43  E-value=0.098  Score=37.41  Aligned_cols=56  Identities=5%  Similarity=-0.161  Sum_probs=31.5

Q ss_pred             cccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCC-CCCcEEEEEeCCCCCCCccCC
Q psy2792          14 ICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAV-NNVPVMLLANKLDLEHLRQVD   69 (173)
Q Consensus        14 ~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~~~v~   69 (173)
                      ....|+++||++++...--+.....+..+....+. --.++|||.||+|.......+
T Consensus       110 ~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         110 DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             cCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence            34678999999887532111112233334433311 124789999999986544433

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.10  E-value=0.091  Score=38.08  Aligned_cols=56  Identities=14%  Similarity=0.060  Sum_probs=35.0

Q ss_pred             cHhhhcccCcEEE-EEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccC
Q psy2792           9 TLTAMICWADGCI-IVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQV   68 (173)
Q Consensus         9 ~~~~y~~~ad~ii-lv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v   68 (173)
                      +...|+.+.+.+| +|.+.+...+-.....|...+..    ...++++|.||+|.......
T Consensus       154 ~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~----~~~r~i~Vltk~D~~~~~~~  210 (299)
T d2akab1         154 MLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP----QGQRTIGVITKLDLMDEGTD  210 (299)
T ss_dssp             HHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT----TCSSEEEEEECGGGSCTTCC
T ss_pred             HHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc----CCCceeeEEeccccccchhh
Confidence            5677888887554 56655544333344445544432    34689999999998765443

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=91.52  E-value=0.11  Score=37.71  Aligned_cols=55  Identities=15%  Similarity=0.085  Sum_probs=33.7

Q ss_pred             cHhhhcccCcEEEEEEe-CCChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCcc
Q psy2792           9 TLTAMICWADGCIIVYS-LIDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQ   67 (173)
Q Consensus         9 ~~~~y~~~ad~iilv~d-~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~   67 (173)
                      +...|+.+++.+|+++. .+....-.....+...+.    +....+++|.||+|......
T Consensus       160 ~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~----~~~~r~i~Vitk~D~~~~~~  215 (306)
T d1jwyb_         160 MVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVD----PEGKRTIGVITKLDLMDKGT  215 (306)
T ss_dssp             HHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHC----SSCSSEEEEEECTTSSCSSC
T ss_pred             HHHHHHhCCCceeEEeecccccccccHHHHHHHHhC----cCCCeEEEEEeccccccchh
Confidence            67789999998777763 332211122233444432    24468999999999865433

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=84.59  E-value=2.1  Score=29.37  Aligned_cols=62  Identities=13%  Similarity=0.089  Sum_probs=33.7

Q ss_pred             cCcEEEEEEeCCChhhHHHH-HHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcC--CeEEEEc
Q psy2792          16 WADGCIIVYSLIDKESFDYA-VSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYN--CTFHEVS   88 (173)
Q Consensus        16 ~ad~iilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~--~~~~e~S   88 (173)
                      ..+++|.|.|.......... ..+...+..    .   =+||.||+|+...    .+......+..+  ..+++++
T Consensus       121 ~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~----A---D~ivlNK~Dl~~~----~~~~~~~l~~lNP~a~Ii~~~  185 (222)
T d1nija1         121 LLDGVIALVDAVHADEQMNQFTIAQSQVGY----A---DRILLTKTDVAGE----AEKLHERLARINARAPVYTVT  185 (222)
T ss_dssp             EEEEEEEEEETTTHHHHHHHCHHHHHHHHT----C---SEEEEECTTTCSC----THHHHHHHHHHCSSSCEEECC
T ss_pred             cccchhhhhhhhhhhhhhhhhHHHHHHHHh----C---CcccccccccccH----HHHHHHHHHHHhCCCeEEEee
Confidence            35889999999875432111 122233322    1   2578899998642    233444444443  5566654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=83.14  E-value=4  Score=27.27  Aligned_cols=61  Identities=7%  Similarity=0.169  Sum_probs=40.3

Q ss_pred             HhhhcccCcEEEEEEeCCChhhHHHHHHHHHHHHhhhCCCCCcEE-EEEeCCCCCCCccCCHHHHHHH
Q psy2792          10 LTAMICWADGCIIVYSLIDKESFDYAVSTLQNLQRHRAVNNVPVM-LLANKLDLEHLRQVDESLGRST   76 (173)
Q Consensus        10 ~~~y~~~ad~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii-lv~NK~Dl~~~~~v~~~~~~~~   76 (173)
                      ...-+..+|.+++|... +..++......+..+.+    .++|++ +|.|+.|..+ ..+.....+.+
T Consensus       127 ~~~~l~~aD~viiv~~~-~~~s~~~~~~~~~~~~~----~~~~~~giv~N~~~~~~-~~~~~~~~~~~  188 (237)
T d1g3qa_         127 AMSAMLSGEEALLVTNP-EISCLTDTMKVGIVLKK----AGLAILGFVLNRYGRSD-RDIPPEAAEDV  188 (237)
T ss_dssp             HHHHHTTCSEEEEEECS-CHHHHHHHHHHHHHHHH----TTCEEEEEEEEEETSCT-TCCCHHHHHHH
T ss_pred             chhhhhhhhcccccccc-cceecchhhHHHHHHhh----hhhhhhhhhhccccccc-chhhhHHHHhh
Confidence            34446679999999886 45677777766666655    346765 8899998643 34445444444

>d1zpda1 c.31.1.3 (A:188-362) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: DHS-like NAD/FAD-binding domain
superfamily: DHS-like NAD/FAD-binding domain
family: Pyruvate oxidase and decarboxylase, middle domain
domain: Pyruvate decarboxylase
species: Zymomonas mobilis [TaxId: 542]

Probab=81.54  E-value=3.3  Score=27.06  Aligned_cols=55  Identities=15%  Similarity=0.116  Sum_probs=37.4

Q ss_pred             CChhhHHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEc
Q psy2792          27 IDKESFDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVS   88 (173)
Q Consensus        27 ~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~S   88 (173)
                      +|+.+++..-..+.++..   ..+.|+|++|..+....    ..++...+++..+++++.+-
T Consensus         3 sd~~~l~~~v~~~~~~l~---~AkrPvIi~G~g~~~~~----a~~~l~~lae~~~~Pv~tt~   57 (175)
T d1zpda1           3 SDEASLNAAVDETLKFIA---NRDKVAVLVGSKLRAAG----AEEAAVKFTDALGGAVATMA   57 (175)
T ss_dssp             CCHHHHHHHHHHHHHHHT---TCSCEEEEECTTTTTTT----CHHHHHHHHHHHCCCEEEEG
T ss_pred             CChHHHHHHHHHHHHHHH---cCCCEEEEECcCccccc----hHHHHHHHHHhhceeEEecc
Confidence            566666554333322222   35789999999998532    36788899999999887554

>d1eg7a_ c.37.1.10 (A:) Formyltetrahydrofolate synthetase {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Formyltetrahydrofolate synthetase
species: Moorella thermoacetica [TaxId: 1525]

Probab=81.28  E-value=2.1  Score=33.60  Aligned_cols=72  Identities=11%  Similarity=0.092  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHhhhCCCCCcEEEEEeCCCCCCCccCCHHHHHHHhhhcCCeEEEEcccCCcccHHHHHHHHHHHHhcC
Q psy2792          32 FDYAVSTLQNLQRHRAVNNVPVMLLANKLDLEHLRQVDESLGRSTAVKYNCTFHEVSVADNSPAIYQAFDHLLTESRGG  110 (173)
Q Consensus        32 ~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~~v~~lf~~l~~~i~~~  110 (173)
                      |.++..-++.++.+    ++|+||..|+..-..+.+  .+...++|.+.++.+...=++-|. |-.+|-+.+++.+-..
T Consensus       354 ~~NL~rHIeNi~~f----GlpvVVAIN~F~tDTd~E--i~~i~~~~~~~g~~~a~~wa~GG~-Ga~dLA~~Vv~a~e~~  425 (549)
T d1eg7a_         354 FANLEKHIENIGKF----GVPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGE-GGLELARKVLQTLESR  425 (549)
T ss_dssp             HHHHHHHHHHHHTT----TCCEEEEEECCTTCCHHH--HHHHHHHTTTSEEEEECCTTTGGG-GGHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhhhc----CCCeEEEeccCCccchhH--HHHHHHHHhhcCcceeeecccCcc-chHHHHHHHHHHHhcc
Confidence            45555556666554    599999999987432222  234566788877765444456666 8889998888877543