Psyllid ID: psy2804

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90----
Protein Sequence
MKFGGTVYFGNPPNNAGELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVSTIPNNIDG
Secondary Structure (PSIPRED)
ccEEEEccccccccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEcccccccccHHHHHHHHHHHcccccccccccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mkfggtvyfgnppnnagelsrlqkkwwidtsqckssksqdthSELALSNVAGVFYILGAGLLLAMAVALVEFCYNthmeasnnkvstipnnidg
Flexible Loop (DISEMBL)
mkfggtvyfgnppnnagELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHmeasnnkvstipnnidg
Low Complexity Region (SEG)
MKFGGTVYFGNPPNNAGELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYIlgaglllamavalvEFCYNTHMEASNNKVSTIPNNIDG
Disordered region (IsUnstruct)
*******YF***********RLQKKWWIDT**************LALSNVAGVFYILGAGLLLAMAVALVEFCYNTHM****************
Disordered Region (DISOPRED)
MKFGGTVYFGNPPNNAGELSRLQKKWWIDT****************LSNVAGVFYILGAGLLLAMAVALVEFCYNTHM*********I******
Disordered Region (DISEMBL)
MKFGGTVYFGNPPNNAGELSRLQKKWWIDT*************ELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVSTIPNNIDG
Disordered Region (DISPRO)
*KFGGTVYFGNPPNNAGELSRLQKKWWIDTSQCKSS***D*HSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNN***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKFGGTVYFGNPPNNAGELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKVSTIPNNIDG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	94	2.2.26 [Sep-21-2011]
P19491	883	Glutamate receptor 2 OS=R	yes	N/A	0.851	0.090	0.524	2e-16
Q9Z2W8	902	Glutamate receptor 4 OS=M	yes	N/A	0.776	0.080	0.546	1e-15
P48058	902	Glutamate receptor 4 OS=H	yes	N/A	0.776	0.080	0.546	1e-15
Q5R4M0	883	Glutamate receptor 2 OS=P	yes	N/A	0.904	0.096	0.489	1e-15
Q38PU7	883	Glutamate receptor 2 OS=M	N/A	N/A	0.851	0.090	0.512	3e-15
P42262	883	Glutamate receptor 2 OS=H	no	N/A	0.851	0.090	0.512	3e-15
P23819	883	Glutamate receptor 2 OS=M	no	N/A	0.851	0.090	0.512	3e-15
Q38PU5	902	Glutamate receptor 4 OS=M	N/A	N/A	0.776	0.080	0.533	6e-15
P19493	902	Glutamate receptor 4 OS=R	no	N/A	0.776	0.080	0.533	7e-15
Q9Z2W9	888	Glutamate receptor 3 OS=M	no	N/A	0.744	0.078	0.541	1e-14

>sp|P19491|GRIA2_RAT Glutamate receptor 2 OS=Rattus norvegicus GN=Gria2 PE=1 SV=2

 Score = 84.0 bits (206), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 775 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Query: 72  FCYNTHMEASNNKVSTIPNNID 93
           FCY +  EA   KV+  P NI+
Sbjct: 835 FCYKSRAEAKRMKVAKNPQNIN 856

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.
Rattus norvegicus (taxid: 10116)

>sp|Q9Z2W8|GRIA4_MOUSE Glutamate receptor 4 OS=Mus musculus GN=Gria4 PE=1 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           + AG L +L+ KWW D  +C  K S S+D  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 776 SEAGVLDKLKNKWWYDKGECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 835

Query: 72  FCYNTHMEASNNKVS 86
           FCY +  EA   K++
Sbjct: 836 FCYKSRAEAKRMKLT 850

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Mus musculus (taxid: 10090)

>sp|P48058|GRIA4_HUMAN Glutamate receptor 4 OS=Homo sapiens GN=GRIA4 PE=2 SV=2

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 51/75 (68%), Gaps = 2/75 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           + AG L +L+ KWW D  +C  K S S+D  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 776 SEAGVLDKLKNKWWYDKGECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 835

Query: 72  FCYNTHMEASNNKVS 86
           FCY +  EA   K++
Sbjct: 836 FCYKSRAEAKRMKLT 850

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist.In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Homo sapiens (taxid: 9606)

>sp|Q5R4M0|GRIA2_PONAB Glutamate receptor 2 OS=Pongo abelii GN=GRIA2 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 56/94 (59%), Gaps = 9/94 (9%)

Query: 9   FGNPPNNA-------GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGA 59
            G P N A       G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYIL  
Sbjct: 763 LGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVG 822

Query: 60  GLLLAMAVALVEFCYNTHMEASNNKVSTIPNNID 93
           GL LAM VAL+EFCY +  EA   KV+    NI+
Sbjct: 823 GLGLAMLVALIEFCYKSRAEAKRMKVAKNAQNIN 856

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Pongo abelii (taxid: 9601)

>sp|Q38PU7|GRIA2_MACFA Glutamate receptor 2 OS=Macaca fascicularis GN=GRIA2 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 775 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Query: 72  FCYNTHMEASNNKVSTIPNNID 93
           FCY +  EA   KV+    NI+
Sbjct: 835 FCYKSRAEAKRMKVAKNAQNIN 856

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Macaca fascicularis (taxid: 9541)

>sp|P42262|GRIA2_HUMAN Glutamate receptor 2 OS=Homo sapiens GN=GRIA2 PE=1 SV=3

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 775 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Query: 72  FCYNTHMEASNNKVSTIPNNID 93
           FCY +  EA   KV+    NI+
Sbjct: 835 FCYKSRAEAKRMKVAKNAQNIN 856

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Homo sapiens (taxid: 9606)

>sp|P23819|GRIA2_MOUSE Glutamate receptor 2 OS=Mus musculus GN=Gria2 PE=1 SV=3

 Score = 80.5 bits (197), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 775 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Query: 72  FCYNTHMEASNNKVSTIPNNID 93
           FCY +  EA   KV+    NI+
Sbjct: 835 FCYKSRAEAKRMKVAKNAQNIN 856

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Mus musculus (taxid: 10090)

>sp|Q38PU5|GRIA4_MACFA Glutamate receptor 4 OS=Macaca fascicularis GN=GRIA4 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           N  G L +L+ KWW D  +C S    S+D  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 776 NEPGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 835

Query: 72  FCYNTHMEASNNKVS 86
           FCY +  EA   K++
Sbjct: 836 FCYKSRAEAKRMKLT 850

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Macaca fascicularis (taxid: 9541)

>sp|P19493|GRIA4_RAT Glutamate receptor 4 OS=Rattus norvegicus GN=Gria4 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 40/75 (53%), Positives = 49/75 (65%), Gaps = 2/75 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           N  G L +L+ KWW D  +C S    S+D  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 776 NEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 835

Query: 72  FCYNTHMEASNNKVS 86
           FCY +  EA   K++
Sbjct: 836 FCYKSRAEAKRMKLT 850

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2W9|GRIA3_MOUSE Glutamate receptor 3 OS=Mus musculus GN=Gria3 PE=1 SV=2

 Score = 78.6 bits (192), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 49/72 (68%), Gaps = 2/72 (2%)

Query: 17  GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCY 74
           G L +L+ KWW D  +C  K S S+D  S L+LSNVAGVFYIL  GL LAM VAL+EFCY
Sbjct: 783 GILDKLKNKWWYDKGECGAKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMMVALIEFCY 842

Query: 75  NTHMEASNNKVS 86
            +  E+   K++
Sbjct: 843 KSRAESKRMKLT 854

Receptor for glutamate that functions as ligand-gated ion channel in the central nervous system and plays an important role in excitatory synaptic transmission. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. Binding of the excitatory neurotransmitter L-glutamate induces a conformation change, leading to the opening of the cation channel, and thereby converts the chemical signal to an electrical impulse. The receptor then desensitizes rapidly and enters a transient inactive state, characterized by the presence of bound agonist. In the presence of CACNG4 or CACNG7 or CACNG8, shows resensitization which is characterized by a delayed accumulation of current flux upon continued application of glutamate.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
241086353	725	glutamate receptor, putative [Ixodes sca	0.744	0.096	0.577	8e-17
391341740	827	PREDICTED: glutamate receptor 1-like [Me	0.744	0.084	0.563	1e-16
189241889	929	PREDICTED: similar to AGAP006027-PA [Tri	0.882	0.089	0.436	7e-16
242019761	836	glutamate receptor 1 precursor, putative	0.734	0.082	0.571	8e-16
391325082	824	PREDICTED: glutamate receptor 1-like [Me	0.723	0.082	0.557	3e-15
8393475	883	glutamate receptor 2 isoform 1 precursor	0.904	0.096	0.5	5e-15
149048284	883	glutamate receptor, ionotropic, AMPA2, i	0.819	0.087	0.544	6e-15
348530613	887	PREDICTED: glutamate receptor 2 isoform	0.829	0.087	0.537	9e-15
112821109	1128	EGFP-GluR2 fusion protein [Cloning vecto	0.851	0.070	0.524	9e-15
149048283	883	glutamate receptor, ionotropic, AMPA2, i	0.851	0.090	0.524	1e-14

>gi|241086353|ref|XP_002409162.1| glutamate receptor, putative [Ixodes scapularis] gi|215492645|gb|EEC02286.1| glutamate receptor, putative [Ixodes scapularis]

 Score = 90.9 bits (224), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 41/71 (57%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 17  GELSRLQKKWWIDTSQCKSSKSQD-THSELALSNVAGVFYILGAGLLLAMAVALVEFCYN 75
           G+L+RL+ KWW D S+C+S  S++ T +EL LSNVAG FYIL  GL+LAM VAL+EFCY 
Sbjct: 626 GDLARLENKWWYDRSECRSGDSKESTQNELTLSNVAGCFYILIGGLVLAMVVALLEFCYK 685

Query: 76  THMEASNNKVS 86
           + MEA+ +K++
Sbjct: 686 SRMEAARSKMT 696

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391341740|ref|XP_003745185.1| PREDICTED: glutamate receptor 1-like [Metaseiulus occidentalis]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 40/71 (56%), Positives = 56/71 (78%), Gaps = 1/71 (1%)

Query: 17  GELSRLQKKWWIDTSQCKSSKSQDT-HSELALSNVAGVFYILGAGLLLAMAVALVEFCYN 75
           G+L+RL+ KWW D S+C+++ S+++  +EL LSNVAG FYIL  GL+LAM VALVEFCY 
Sbjct: 725 GDLARLENKWWYDRSECRTTDSKESAQNELTLSNVAGCFYILIGGLVLAMVVALVEFCYK 784

Query: 76  THMEASNNKVS 86
             MEA+ +K++
Sbjct: 785 ARMEAARSKMT 795

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241889|ref|XP_968786.2| PREDICTED: similar to AGAP006027-PA [Tribolium castaneum] gi|270016489|gb|EFA12935.1| hypothetical protein TcasGA2_TC010481 [Tribolium castaneum]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 11/94 (11%)

Query: 3   FGGTVYFGNPPNNA-----------GELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVA 51
           FG     G+P  +A           GEL++L  +WW D ++C   K     +EL+LSNVA
Sbjct: 787 FGVATPLGSPLRDAINLAVLNLKENGELTKLMNRWWYDRTECIHDKQDAARNELSLSNVA 846

Query: 52  GVFYILGAGLLLAMAVALVEFCYNTHMEASNNKV 85
           G+FYIL  GL++A+AVAL+EFCY +H EA   K+
Sbjct: 847 GIFYILIGGLMIALAVALIEFCYKSHTEAVRAKI 880

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242019761|ref|XP_002430327.1| glutamate receptor 1 precursor, putative [Pediculus humanus corporis] gi|212515451|gb|EEB17589.1| glutamate receptor 1 precursor, putative [Pediculus humanus corporis]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 54/70 (77%), Gaps = 1/70 (1%)

Query: 17  GELSRLQKKWWIDTSQCKSSKSQDT-HSELALSNVAGVFYILGAGLLLAMAVALVEFCYN 75
           GEL++L+ +WW   ++CK S  QD   +EL+LS+VAG+FYIL  GL+LAMAVAL+EFCY 
Sbjct: 723 GELTKLKNRWWSYRTECKQSDKQDALGNELSLSHVAGIFYILIGGLILAMAVALLEFCYK 782

Query: 76  THMEASNNKV 85
           +HMEA   K+
Sbjct: 783 SHMEAMRAKI 792

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391325082|ref|XP_003737069.1| PREDICTED: glutamate receptor 1-like [Metaseiulus occidentalis]

 Score = 85.5 bits (210), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%), Gaps = 2/70 (2%)

Query: 17  GELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNT 76
           G+L+RLQ KWW D S+CK+  +    +EL LSNVAG FYIL  GL+LAM VAL+EFCY +
Sbjct: 702 GDLARLQNKWWYDRSECKTGDAN--KNELTLSNVAGCFYILIGGLVLAMVVALLEFCYKS 759

Query: 77  HMEASNNKVS 86
            +EA+ +K +
Sbjct: 760 RLEATRSKTT 769

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|8393475|ref|NP_058957.1| glutamate receptor 2 isoform 1 precursor [Rattus norvegicus] gi|56290|emb|CAA38465.1| glutamate receptor [Rattus norvegicus] gi|482943|gb|AAC37652.1| glutamate receptor [Rattus norvegicus] gi|5764400|gb|AAD51284.1| glutamate receptor subunit GluR2-flip [Rattus norvegicus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 57/94 (60%), Gaps = 9/94 (9%)

Query: 9   FGNPPNNA-------GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGA 59
            G P N A       G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYIL  
Sbjct: 763 LGTPVNLAVLKLSEQGVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVG 822

Query: 60  GLLLAMAVALVEFCYNTHMEASNNKVSTIPNNID 93
           GL LAM VAL+EFCY +  EA   KV+  P NI+
Sbjct: 823 GLGLAMLVALIEFCYKSRAEAKRMKVAKNPQNIN 856

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149048284|gb|EDM00860.1| glutamate receptor, ionotropic, AMPA2, isoform CRA_b [Rattus norvegicus]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 53/79 (67%), Gaps = 2/79 (2%)

Query: 17  GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCY 74
           G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYIL  GL LAM VAL+EFCY
Sbjct: 778 GVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 837

Query: 75  NTHMEASNNKVSTIPNNID 93
            +  EA   KV+  P NI+
Sbjct: 838 KSRAEAKRMKVAKNPQNIN 856

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348530613|ref|XP_003452805.1| PREDICTED: glutamate receptor 2 isoform 4 [Oreochromis niloticus]

 Score = 84.3 bits (207), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/80 (53%), Positives = 52/80 (65%), Gaps = 2/80 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           N  G L +++ KWW D  +C  K S +++  S L+LSNVAGVFYIL  GL LAM VALVE
Sbjct: 779 NEQGTLDKMKNKWWYDKGECGFKDSTNKEKTSALSLSNVAGVFYILVGGLGLAMMVALVE 838

Query: 72  FCYNTHMEASNNKVSTIPNN 91
           FCY +  EA   KVS  P N
Sbjct: 839 FCYKSRAEAKKMKVSQHPPN 858

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|112821109|emb|CAI61935.1| EGFP-GluR2 fusion protein [Cloning vector pGFP-GluR2-Sin]

 Score = 84.0 bits (206), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 14   NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
            N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 1020 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 1079

Query: 72   FCYNTHMEASNNKVSTIPNNID 93
            FCY +  EA   KV+  P NI+
Sbjct: 1080 FCYKSRAEAKRMKVAKNPQNIN 1101

Source: Cloning vector pGFP-GluR2-Sin

Species: Cloning vector pGFP-GluR2-Sin

Genus: N/A

Family: N/A

Order: N/A

Class: N/A

Phylum: N/A

>gi|149048283|gb|EDM00859.1| glutamate receptor, ionotropic, AMPA2, isoform CRA_a [Rattus norvegicus]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/82 (52%), Positives = 53/82 (64%), Gaps = 2/82 (2%)

Query: 14  NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYILGAGLLLAMAVALVE 71
           N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYIL  GL LAM VAL+E
Sbjct: 775 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Query: 72  FCYNTHMEASNNKVSTIPNNID 93
           FCY +  EA   KV+  P NI+
Sbjct: 835 FCYKSRAEAKRMKVAKNPQNIN 856

Source: Rattus norvegicus

Species: Rattus norvegicus

Genus: Rattus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	94
UNIPROTKB|F1N994	258	GRIA4 "Uncharacterized protein	0.776	0.282	0.44	3.9e-11
UNIPROTKB|F1N983	240	GRIA4 "Uncharacterized protein	0.776	0.304	0.426	5.8e-11
UNIPROTKB|H0Y972	214	GRIA2 "Glutamate receptor 2" [	0.819	0.359	0.417	5.8e-11
UNIPROTKB|F1NKF4	242	GRIA2 "Uncharacterized protein	0.819	0.318	0.417	6.1e-11
UNIPROTKB|F1N987	227	GRIA4 "Uncharacterized protein	0.755	0.312	0.438	9.4e-11
UNIPROTKB|F1NY65	242	GRIA2 "Uncharacterized protein	0.851	0.330	0.402	1.1e-10
UNIPROTKB|G3V914	883	Gria2 "Glutamate receptor 2" [	0.819	0.087	0.430	1.6e-10
UNIPROTKB|F1LPK4	920	Gria2 "Glutamate receptor 2" [	0.819	0.083	0.430	1.7e-10
UNIPROTKB|F1LNE4	756	Gria2 "Glutamate receptor 2" [	0.851	0.105	0.414	2.2e-10
RGD|61862	883	Gria2 "glutamate receptor, ion	0.851	0.090	0.414	2.7e-10

UNIPROTKB|F1N994 GRIA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 3.9e-11, P = 3.9e-11
 Identities = 33/75 (44%), Positives = 41/75 (54%)

Query:    14 NNAGELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXE 71
             + AG L +L+ KWW D  +C  K S S+D  S L+LSNVAGVFYI              E
Sbjct:   150 SEAGVLDKLKNKWWYDKGECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 209

Query:    72 FCYNTHMEASNNKVS 86
             FCY +  EA   KV+
Sbjct:   210 FCYKSRAEAKRMKVA 224

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1N983 GRIA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 32/75 (42%), Positives = 41/75 (54%)

Query:    14 NNAGELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXE 71
             + AG L +L+ KWW D  +C  K S S+D  S L+LSNVAGVFYI              E
Sbjct:   150 SEAGVLDKLKNKWWYDKGECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 209

Query:    72 FCYNTHMEASNNKVS 86
             FCY +  EA   K++
Sbjct:   210 FCYKSRAEAKRMKLT 224

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|H0Y972 GRIA2 "Glutamate receptor 2" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 33/79 (41%), Positives = 42/79 (53%)

Query:    17 GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXEFCY 74
             G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYI              EFCY
Sbjct:   109 GVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 168

Query:    75 NTHMEASNNKVSTIPNNID 93
              +  EA   KV+    NI+
Sbjct:   169 KSRAEAKRMKVAKNAQNIN 187

GO:0005215 "transporter activity" evidence=IEA

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

UNIPROTKB|F1NKF4 GRIA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 6.1e-11, P = 6.1e-11
 Identities = 33/79 (41%), Positives = 42/79 (53%)

Query:    17 GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXEFCY 74
             G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYI              EFCY
Sbjct:   153 GVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 212

Query:    75 NTHMEASNNKVSTIPNNID 93
              +  EA   KV+    NI+
Sbjct:   213 KSRAEAKRMKVAKNAQNIN 231

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IEA

GO:0032281 "alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex" evidence=IEA

UNIPROTKB|F1N987 GRIA4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 32/73 (43%), Positives = 39/73 (53%)

Query:    14 NNAGELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXE 71
             + AG L +L+ KWW D  +C  K S S+D  S L+LSNVAGVFYI              E
Sbjct:   150 SEAGVLDKLKNKWWYDKGECGPKDSGSKDKTSALSLSNVAGVFYILVGGLGLAMLVALIE 209

Query:    72 FCYNTHMEASNNK 84
             FCY +  EA   K
Sbjct:   210 FCYKSRAEAKRMK 222

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1NY65 GRIA2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 150 (57.9 bits), Expect = 1.1e-10, P = 1.1e-10
 Identities = 33/82 (40%), Positives = 42/82 (51%)

Query:    14 NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXE 71
             N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYI              E
Sbjct:   150 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 209

Query:    72 FCYNTHMEASNNKVSTIPNNID 93
             FCY +  EA   KV+    NI+
Sbjct:   210 FCYKSRAEAKRMKVAKNAQNIN 231

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0030288 "outer membrane-bounded periplasmic space" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|G3V914 Gria2 "Glutamate receptor 2" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 34/79 (43%), Positives = 43/79 (54%)

Query:    17 GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXEFCY 74
             G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYI              EFCY
Sbjct:   778 GVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 837

Query:    75 NTHMEASNNKVSTIPNNID 93
              +  EA   KV+  P NI+
Sbjct:   838 KSRAEAKRMKVAKNPQNIN 856

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1LPK4 Gria2 "Glutamate receptor 2" [Rattus norvegicus (taxid:10116)]

 Score = 160 (61.4 bits), Expect = 1.7e-10, P = 1.7e-10
 Identities = 34/79 (43%), Positives = 43/79 (54%)

Query:    17 GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXEFCY 74
             G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYI              EFCY
Sbjct:   815 GVLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 874

Query:    75 NTHMEASNNKVSTIPNNID 93
              +  EA   KV+  P NI+
Sbjct:   875 KSRAEAKRMKVAKNPQNIN 893

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

UNIPROTKB|F1LNE4 Gria2 "Glutamate receptor 2" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 34/82 (41%), Positives = 43/82 (52%)

Query:    14 NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXE 71
             N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYI              E
Sbjct:   648 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 707

Query:    72 FCYNTHMEASNNKVSTIPNNID 93
             FCY +  EA   KV+  P NI+
Sbjct:   708 FCYKSRAEAKRMKVAKNPQNIN 729

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=IEA

RGD|61862 Gria2 "glutamate receptor, ionotropic, AMPA 2" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 2.7e-10, P = 2.7e-10
 Identities = 34/82 (41%), Positives = 43/82 (52%)

Query:    14 NNAGELSRLQKKWWIDTSQCKSS--KSQDTHSELALSNVAGVFYIXXXXXXXXXXXXXXE 71
             N  G L +L+ KWW D  +C S    S++  S L+LSNVAGVFYI              E
Sbjct:   775 NEQGLLDKLKNKWWYDKGECGSGGGDSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIE 834

Query:    72 FCYNTHMEASNNKVSTIPNNID 93
             FCY +  EA   KV+  P NI+
Sbjct:   835 FCYKSRAEAKRMKVAKNPQNIN 856

GO:0001919 "regulation of receptor recycling" evidence=IMP

GO:0004872 "receptor activity" evidence=IDA

GO:0004970 "ionotropic glutamate receptor activity" evidence=ISO;IDA;TAS

GO:0004971 "alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity" evidence=IDA;TAS

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA;ISO

GO:0005246 "calcium channel regulator activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0007268 "synaptic transmission" evidence=ISO;IDA

GO:0008021 "synaptic vesicle" evidence=ISO

GO:0008328 "ionotropic glutamate receptor complex" evidence=TAS

GO:0010226 "response to lithium ion" evidence=IEP

GO:0014069 "postsynaptic density" evidence=IDA

GO:0015277 "kainate selective glutamate receptor activity" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0019901 "protein kinase binding" evidence=IPI

GO:0030054 "cell junction" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IDA;IPI

GO:0030425 "dendrite" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0030672 "synaptic vesicle membrane" evidence=IDA

GO:0031623 "receptor internalization" evidence=IDA

GO:0032279 "asymmetric synapse" evidence=IDA

GO:0032281 "alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex" evidence=ISO;IDA

GO:0032839 "dendrite cytoplasm" evidence=IDA

GO:0034220 "ion transmembrane transport" evidence=ISO

GO:0035235 "ionotropic glutamate receptor signaling pathway" evidence=ISO;ISS

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0043005 "neuron projection" evidence=ISO

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043195 "terminal bouton" evidence=IDA

GO:0043197 "dendritic spine" evidence=IDA

GO:0043198 "dendritic shaft" evidence=IDA

GO:0043204 "perikaryon" evidence=IDA

GO:0043234 "protein complex" evidence=IDA;IPI

GO:0045184 "establishment of protein localization" evidence=IMP

GO:0045202 "synapse" evidence=ISO;IDA

GO:0045211 "postsynaptic membrane" evidence=IEA

GO:0050806 "positive regulation of synaptic transmission" evidence=IMP

GO:0051262 "protein tetramerization" evidence=IDA

GO:0051966 "regulation of synaptic transmission, glutamatergic" evidence=IMP

GO:0060992 "response to fungicide" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P19491	GRIA2_RAT	No assigned EC number	0.5243	0.8510	0.0906	yes	N/A
P48058	GRIA4_HUMAN	No assigned EC number	0.5466	0.7765	0.0809	yes	N/A
Q10914	GLR2_CAEEL	No assigned EC number	0.5156	0.6702	0.0644	yes	N/A
Q9Z2W8	GRIA4_MOUSE	No assigned EC number	0.5466	0.7765	0.0809	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	94
pfam00060	268	pfam00060, Lig_chan, Ligand-gated ion channel	6e-11

>gnl|CDD|215685 pfam00060, Lig_chan, Ligand-gated ion channel

 Score = 56.1 bits (136), Expect = 6e-11
 Identities = 19/45 (42%), Positives = 27/45 (60%)

Query: 17  GELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYILGAGL 61
           GEL +L+ KWW    +C    +  + S+L L + AG+F ILG GL
Sbjct: 224 GELQKLENKWWKKKGECSLKSTAVSSSQLGLESFAGLFLILGIGL 268

This family includes the four transmembrane regions of the ionotropic glutamate receptors and NMDA receptors. Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	94
KOG1054|consensus	897		99.75
KOG1052|consensus	656		99.29
KOG1053|consensus	1258		99.07
KOG4440|consensus	993		99.01
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	95.71
PF13373	140	DUF2407_C: DUF2407 C-terminal domain	88.77
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	87.9
COG4846	163	CcdC Membrane protein involved in cytochrome C bio	81.69

>KOG1054|consensus

Probab=99.75  E-value=3.9e-19  Score=140.19  Aligned_cols=83  Identities=49%  Similarity=0.771  Sum_probs=74.3

Q ss_pred             CcCCcccc-----------ccccccCCchhhHHHhhcCCCCCCCCCC--ccCccCcccccccchhHHHHHHHHHHHHHHH
Q psy2804           2 KFGGTVYF-----------GNPPNNAGELSRLQKKWWIDTSQCKSSK--SQDTHSELALSNVAGVFYILGAGLLLAMAVA   68 (94)
Q Consensus         2 ~~~~~~~~-----------~LkL~E~G~l~~L~~kW~~~~~~C~~~~--~~~~~~~L~l~~~~GvFiil~~g~~lal~i~   68 (94)
                      -||+.||.           +|+|+|.|.|++|++|||.+.|+|....  ..++++.|+++|++|+||||..|+++|++++
T Consensus       754 GYGiATp~Gsslr~~vNLAvLkL~E~G~LdKLkNKWWYDkGeC~sg~~ds~~ktsaLsLSnVAGvFYIL~gGl~laMlvA  833 (897)
T KOG1054|consen  754 GYGIATPKGSSLRNAVNLAVLKLNEQGLLDKLKNKWWYDKGECGSGGGDSKDKTSALSLSNVAGVFYILVGGLGLAMLVA  833 (897)
T ss_pred             ceeecCCCCcccccchhhhhhhhcccchHHHhhhhhcccccccCCCCCCCCcchhhcchhhccceeeeehhhHHHHHHHH
Confidence            48888884           6799999999999999999999998843  3345589999999999999999999999999


Q ss_pred             HHHHHHHhhccccccc
Q psy2804          69 LVEFCYNTHMEASNNK   84 (94)
Q Consensus        69 i~e~~~~~~k~~~~~~   84 (94)
                      ++||+|+++.++++.+
T Consensus       834 LiEF~yksr~Eakr~k  849 (897)
T KOG1054|consen  834 LIEFCYKSRAEAKRMK  849 (897)
T ss_pred             HHHHHHHhhHHHHhhh
Confidence            9999999999988877

>KOG1052|consensus

Probab=99.29  E-value=4.2e-12  Score=101.01  Aligned_cols=80  Identities=24%  Similarity=0.456  Sum_probs=66.8

Q ss_pred             ccccccccCCchhhHHHhhcCCC---CCCCCCCccCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy2804           8 YFGNPPNNAGELSRLQKKWWIDT---SQCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNK   84 (94)
Q Consensus         8 ~~~LkL~E~G~l~~L~~kW~~~~---~~C~~~~~~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~   84 (94)
                      .++|+++|.|.++++++|||...   ..|+...   +...|++++++|+|+++++|+++|++++++|++|++++...+++
T Consensus       552 ~~Il~l~e~g~l~~~~~kw~~~~~~~~~~~~~~---~~~~l~~~~~~g~F~i~~~g~~lal~vfi~E~~~~~~~~~~~~~  628 (656)
T KOG1052|consen  552 RAILKLQETGILQKLKRKWFSKKPCLPKCSQTE---KTKALDLESFWGLFLILLVGYLLALLVFILELLYSRRRTLLRER  628 (656)
T ss_pred             HHHHhhccccHHHHHHHHhccCCCCCCCCCCcc---cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence            46889999999999999999864   3454433   46789999999999999999999999999999999988876666


Q ss_pred             cccccc
Q psy2804          85 VSTIPN   90 (94)
Q Consensus        85 ~s~~~~   90 (94)
                      ...+.+
T Consensus       629 ~~~~~~  634 (656)
T KOG1052|consen  629 LERVST  634 (656)
T ss_pred             cccccc
Confidence            555443

>KOG1053|consensus

Probab=99.07  E-value=1.2e-10  Score=95.67  Aligned_cols=66  Identities=29%  Similarity=0.413  Sum_probs=59.2

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCCCCCccCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHh
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNT   76 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~~~~~~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~   76 (94)
                      ++|+...+|+|++|+++|..  +.|.++..+..+.+|+++||+|+|++|++|+++++++.++|+++.-
T Consensus       787 allQy~gdGeme~Le~~Wlt--gic~n~k~evmSsqLdIdnmaGvFymL~~amgLSllvfi~EHlvYw  852 (1258)
T KOG1053|consen  787 ALLQYLGDGEMEMLETLWLT--GICHNSKNEVMSSQLDIDNMAGVFYMLAVAMGLSLLVFIWEHLVYW  852 (1258)
T ss_pred             HHHHHhccchHHHHHHHHhh--cccccchhhhhhcccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999995  5788766666899999999999999999999999999999997643

>KOG4440|consensus

Probab=99.01  E-value=6.5e-12  Score=100.31  Aligned_cols=79  Identities=23%  Similarity=0.423  Sum_probs=66.8

Q ss_pred             cccccccccCCchhhHHHhhcCCCC-CCCCCCccCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy2804           7 VYFGNPPNNAGELSRLQKKWWIDTS-QCKSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKV   85 (94)
Q Consensus         7 ~~~~LkL~E~G~l~~L~~kW~~~~~-~C~~~~~~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~   85 (94)
                      |.++|++.|+|+|++|+++|....+ +|.+.. .+.+..|+++|++|+|++++.|++.++++.++|..|++++.+++.++
T Consensus       784 tlaIL~~hEsGfMEkLDk~Wi~~Ggpq~c~~~-~k~PatLgl~NMagvFiLV~~Gia~GifLifiEv~Ykrh~~~k~kr~  862 (993)
T KOG4440|consen  784 TLAILKSHESGFMEKLDKTWIRYGGPQECDSR-SKAPATLGLENMAGVFILVAGGIAAGIFLIFIEVAYKRHKDAKRKRM  862 (993)
T ss_pred             hHHHHHhhhcchHHHHHHHHHhcCCcchhhhh-ccCcccccccccccEEEEEecchhheeeEEEEeehhhhhhhhhhHHH
Confidence            5689999999999999999997533 333332 23688999999999999999999999999999999999988777665


Q ss_pred             c
Q psy2804          86 S   86 (94)
Q Consensus        86 s   86 (94)
                      -
T Consensus       863 ~  863 (993)
T KOG4440|consen  863 Q  863 (993)
T ss_pred             H
Confidence            4

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=95.71  E-value=0.0026  Score=41.21  Aligned_cols=32  Identities=41%  Similarity=0.662  Sum_probs=21.0

Q ss_pred             CCCCCCCCc-cCccCcccccccchhHHHHHHHH
Q psy2804          30 TSQCKSSKS-QDTHSELALSNVAGVFYILGAGL   61 (94)
Q Consensus        30 ~~~C~~~~~-~~~~~~L~l~~~~GvFiil~~g~   61 (94)
                      .+.|+..+. ..+..+|+++++.|+|+++++|+
T Consensus       116 ~~~c~~~~~~~~~~~~l~l~~~~g~F~il~~G~  148 (148)
T PF00060_consen  116 KSECSSKEDDSNEPVPLTLDNLAGAFLILLIGL  148 (148)
T ss_dssp             TSSSSHHHHSTT---S--SHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCccCCCCCcccHHHHHHHHHHHHHhC
Confidence            346877432 34688999999999999999985

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>PF13373 DUF2407_C: DUF2407 C-terminal domain

Probab=88.77  E-value=2  Score=28.76  Aligned_cols=71  Identities=18%  Similarity=0.224  Sum_probs=44.4

Q ss_pred             chhhHHHhhcCCCCCC---CCC-Cc---cCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhc---ccccccccc
Q psy2804          18 ELSRLQKKWWIDTSQC---KSS-KS---QDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHM---EASNNKVST   87 (94)
Q Consensus        18 ~l~~L~~kW~~~~~~C---~~~-~~---~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k---~~~~~~~s~   87 (94)
                      .+..||++|..+..+-   ... ..   ....+...-.+..+..--+..|+.++++..++-++|=.+.   -+++.|+++
T Consensus        46 ~lR~LEe~Wmd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlL~G~liGff~g~~~~~~L~~~~~v~s~r~~~aI  125 (140)
T PF13373_consen   46 DLRQLEERWMDSGSNPAARAGGGGAGDNGDQFNSAVDASNSGHNDDLLWGLLIGFFFGLFSLFWLLREDGVFSKRQKMAI  125 (140)
T ss_pred             HHHHHHHHHHhCCCcccccCCCCCCCCccccccccccccccchHHHHHHHHHHHHHHHHHhHHHHhhcccccccceeEee
Confidence            7889999999865331   100 00   0011111234566888889999999999999886654333   467777665


Q ss_pred             c
Q psy2804          88 I   88 (94)
Q Consensus        88 ~   88 (94)
                      .
T Consensus       126 ~  126 (140)
T PF13373_consen  126 I  126 (140)
T ss_pred             e
Confidence            4

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=87.90  E-value=0.66  Score=30.23  Aligned_cols=25  Identities=16%  Similarity=0.150  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccccc
Q psy2804          58 GAGLLLAMAVALVEFCYNTHMEASN   82 (94)
Q Consensus        58 ~~g~~lal~i~i~e~~~~~~k~~~~   82 (94)
                      ++++++.++++++-+++.++|+.++
T Consensus         5 ~~iii~~i~l~~~~~~~~~rRR~r~   29 (130)
T PF12273_consen    5 FAIIIVAILLFLFLFYCHNRRRRRR   29 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3344444455555555555555444

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>COG4846 CcdC Membrane protein involved in cytochrome C biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=81.69  E-value=2.2  Score=28.79  Aligned_cols=44  Identities=16%  Similarity=0.359  Sum_probs=28.8

Q ss_pred             cCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy2804          42 HSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKV   85 (94)
Q Consensus        42 ~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~   85 (94)
                      +++++...++|+|.+++.|.++---++..--.-+..+...+.++
T Consensus       115 s~sid~geLsGMF~ilAf~MIvPWRiaMy~~Ykkl~kql~~~n~  158 (163)
T COG4846         115 SGSIDVGELSGMFWILAFGMIVPWRIAMYFSYKKLEKQLGKVNV  158 (163)
T ss_pred             cCCccHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhc
Confidence            46788889999999999999887666543322222344444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	94
3kg2_A	823	Ampa Subtype Ionotropic Glutamate Receptor In Compl		3e-09

>pdb|3KG2|A Chain A, Ampa Subtype Ionotropic Glutamate Receptor In Complex With Competitive Antagonist Zk 200775 Length = 823

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/85 (40%), Positives = 41/85 (48%), Gaps = 9/85 (10%)
Query: 9   FGNPPNNA-------GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYIXXX 59
            G P N A       G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYI   
Sbjct: 733 LGTPVNLAVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVG 792
Query: 60  XXXXXXXXXXXEFCYNTHMEASNNK 84
                      EFCY +  EA   K
Sbjct: 793 GLGLAMLVALIEFCYKSRAEAKRMK 817

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	94
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	3e-18

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823

 Score = 76.8 bits (188), Expect = 3e-18
 Identities = 39/73 (53%), Positives = 47/73 (64%), Gaps = 2/73 (2%)

Query: 17  GELSRLQKKWWIDTSQC--KSSKSQDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCY 74
           G L +L+ KWW D  +C  K S S++  S L+LSNVAGVFYIL  GL LAM VAL+EFCY
Sbjct: 748 GLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCY 807

Query: 75  NTHMEASNNKVST 87
            +  EA   K   
Sbjct: 808 KSRAEAKRMKGLV 820

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	94
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	99.36
1yae_A	312	Glutamate receptor, ionotropic kainate 2; kainate	94.26
1pb7_A	292	N-methyl-D-aspartate receptor subunit 1; ligand bi	91.77
1mqi_A	263	Glutamate receptor 2; GLUR2, ligand binding core,	89.5
2rc8_A	294	Glutamate [NMDA] receptor subunit 3A; membrane pro	89.13
3g3k_A	259	Glutamate receptor, ionotropic kainate 2; membrane	87.81
2v3u_A	265	Glutamate receptor delta-2 subunit; postsynaptic m	87.73
3i6v_A	232	Periplasmic His/Glu/Gln/Arg/opine family-binding;	80.92

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=99.36  E-value=3.6e-13  Score=106.19  Aligned_cols=77  Identities=48%  Similarity=0.785  Sum_probs=59.7

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCCCCCc--cCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCKSSKS--QDTHSELALSNVAGVFYILGAGLLLAMAVALVEFCYNTHMEASNNKV   85 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~~~~~--~~~~~~L~l~~~~GvFiil~~g~~lal~i~i~e~~~~~~k~~~~~~~   85 (94)
                      ++++|+|+|.++++++|||.+.+.|.....  ..+..+|+++++.|+|+++++|+++|++++++|++|++++.+++.+.
T Consensus       740 ~il~l~e~G~~~~~~~~w~~~~~~c~~~~~~~~~~~~~L~l~~l~g~f~il~~g~~la~~vf~~E~~~~~~~~~~~~~~  818 (823)
T 3kg2_A          740 AVLKLSEQGLLDKLKNKWWYDKGECGAKDSGSKEKTSALSLSNVAGVFYILVGGLGLAMLVALIEFCYKSRAEAKRMKG  818 (823)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTTSCSCSSTTTSTTTCCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHhCCcHHHHHHhhCcCCCCCCCCCccccccCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHcchhhhhccC
Confidence            578999999999999999987778987432  23567999999999999999999999999999999998888776543

>1yae_A Glutamate receptor, ionotropic kainate 2; kainate receptor, membrane protein; HET: NAG FUC DOQ; 3.11A {Rattus norvegicus} SCOP: c.94.1.1

Probab=94.26  E-value=0.0071  Score=42.28  Aligned_cols=40  Identities=25%  Similarity=0.498  Sum_probs=20.4

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCCCCCccCccCccccccc
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCKSSKSQDTHSELALSNV   50 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~~~~~~~~~~~L~l~~~   50 (94)
                      ++.+|+++|.+++|.+||+.. ..|+....+ +++.++++|.
T Consensus       268 ~l~~l~~~G~~~~i~~kw~~~-~~c~~~~~~-~~~~~~~~~~  307 (312)
T 1yae_A          268 AILQLQEEGKLHMMKEKWWRG-NGCPEEESK-EASALGVQNH  307 (312)
T ss_dssp             HHHHHHHHTHHHHHHHHHHCC-SCC-----------------
T ss_pred             HHHHHHHcCCHHHHHhhhcCC-CCCCCCCCc-cchhhhhhcc
Confidence            455789999999999999986 479875543 6778888775

>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A

Probab=91.77  E-value=0.043  Score=38.16  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCCC
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCKS   35 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~~   35 (94)
                      ++++|+++|.+++|.+|||.. ++|+.
T Consensus       267 al~~l~~~G~~~~l~~kw~~~-~~c~~  292 (292)
T 1pb7_A          267 SILKSHENGFMEDLDKTWVRY-QECDS  292 (292)
T ss_dssp             HHHHHHHSSHHHHHHHHHTSS-SCCCC
T ss_pred             HHHHHHhCCCHHHHHHhhCCC-CCCCC
Confidence            466899999999999999974 56863

>1mqi_A Glutamate receptor 2; GLUR2, ligand binding core, S1S2, partial agonist, WILLARDIINES, fluoro-WILLARDIINE, membrane protein; HET: FWD; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1ftj_A* 1ftl_A* 1fto_A 1fw0_A* 1m5b_A* 1ftm_A* 1m5c_A* 1mm6_A* 1mm7_A* 1mqg_A* 1m5e_A* 1mqj_A* 1ms7_A* 1mxu_A* 1mxv_A 1mxw_A 1mxx_A 1mxy_A 1mxz_A 1my0_A ...

Probab=89.50  E-value=0.084  Score=35.30  Aligned_cols=26  Identities=35%  Similarity=0.750  Sum_probs=22.4

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCC
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCK   34 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~   34 (94)
                      ++.+|.++|.+++|.+||+...+.|+
T Consensus       237 ~l~~l~~~g~~~~i~~k~~~~~~~C~  262 (263)
T 1mqi_A          237 AVLKLNEQGLLDKLKNKWWYDKGECG  262 (263)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred             HHHHHHhcccHHHHHHHHcCCCCCCC
Confidence            34578899999999999998778896

>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A

Probab=89.13  E-value=0.076  Score=36.76  Aligned_cols=25  Identities=20%  Similarity=0.420  Sum_probs=18.6

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCC
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCK   34 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~   34 (94)
                      ++.+|+++|.+++|.+|||.. +.|+
T Consensus       269 al~~l~~~G~~~~l~~kw~~~-~~c~  293 (294)
T 2rc8_A          269 LISQYKSHGFMDVLHDKWYKV-VPCG  293 (294)
T ss_dssp             HHHHHHHTTHHHHHHHHHCCC-----
T ss_pred             HHHHHHhCCCHHHHHHhhcCC-CCCC
Confidence            466899999999999999974 5685

>3g3k_A Glutamate receptor, ionotropic kainate 2; membrane protein, cell junction, cell membrane, glycoprotein, ION transport, ionic channel, membrane; HET: GLU IPA; 1.24A {Rattus norvegicus} PDB: 3g3j_A* 3g3i_A* 2i0b_A* 3g3h_A* 3g3g_A* 3g3f_A* 1s7y_A* 1s9t_A* 1sd3_A* 1tt1_A* 1s50_A* 2xxr_A* 2xxt_A* 2xxx_A* 2xxw_A* 2xxy_A* 2xxu_A* 2xxv_A* 3qxm_A* 2i0c_A* ...

Probab=87.81  E-value=0.11  Score=34.57  Aligned_cols=26  Identities=23%  Similarity=0.570  Sum_probs=18.7

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCCC
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCKS   35 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~~   35 (94)
                      ++.+|+++|.+++|.+||+.. ++|++
T Consensus       234 ~l~~l~~~G~~~~i~~kw~~~-~~c~~  259 (259)
T 3g3k_A          234 AILKLQEQGKLHMMKEKWWRG-NGCPE  259 (259)
T ss_dssp             HHHHHHHTC-CHHHHHHHHCC---CC-
T ss_pred             HHHHHHhcChHHHHHHhhcCC-CCCCC
Confidence            345789999999999999984 56873

>2v3u_A Glutamate receptor delta-2 subunit; postsynaptic membrane, ionotropic glutamate receptors, transmembrane, membrane protein; 1.74A {Rattus norvegicus} PDB: 2v3t_A

Probab=87.73  E-value=0.11  Score=34.60  Aligned_cols=26  Identities=27%  Similarity=0.647  Sum_probs=20.6

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCC
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCK   34 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~   34 (94)
                      ++.+|.++|.+++|.+||+.....|+
T Consensus       239 ~l~~l~~~g~~~~i~~kw~~~~~~c~  264 (265)
T 2v3u_A          239 RILELQQSGDMDILKHKWWPKNGQCD  264 (265)
T ss_dssp             HHHHHHHHTHHHHHHHHHCCCCCC--
T ss_pred             HHHHHhhCChHHHHHhhcCCCcCcCC
Confidence            35578899999999999998777785

>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0

Probab=80.92  E-value=0.39  Score=31.53  Aligned_cols=24  Identities=21%  Similarity=0.429  Sum_probs=19.3

Q ss_pred             ccccccCCchhhHHHhhcCCCCCC
Q psy2804          10 GNPPNNAGELSRLQKKWWIDTSQC   33 (94)
Q Consensus        10 ~LkL~E~G~l~~L~~kW~~~~~~C   33 (94)
                      +.++.++|.+++|.+||+.....|
T Consensus       199 l~~l~~~G~~~~i~~k~~~~~~~~  222 (232)
T 3i6v_A          199 ITSMKEDGTLNTMIKKWFGEDAAV  222 (232)
T ss_dssp             HHHHHHTSHHHHHHHHHHCTTSCC
T ss_pred             HHHHHHCChHHHHHHHHcCCCCCc
Confidence            457889999999999999865433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	94
d1mqia_	260	Glutamate receptor ligand binding core {Rat (Rattu	95.3
d1pb7a_	289	N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt	92.79
d2a5sa1	277	N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt	92.22

>d1mqia_ c.94.1.1 (A:) Glutamate receptor ligand binding core {Rat (Rattus norvegicus), GluR2 [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Glutamate receptor ligand binding core
species: Rat (Rattus norvegicus), GluR2 [TaxId: 10116]

Probab=95.30  E-value=0.0018  Score=42.47  Aligned_cols=26  Identities=35%  Similarity=0.750  Sum_probs=23.2

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCC
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCK   34 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~   34 (94)
                      ++.+|+++|++++|.+|||.+.++|.
T Consensus       235 aL~~l~~~G~~~~l~~KwF~~~~~~~  260 (260)
T d1mqia_         235 AVLKLNEQGLLDKLKNKWWYDKGECG  260 (260)
T ss_dssp             HHHHHHHTTHHHHHHHHHHTTTCSCC
T ss_pred             HHHHHHHCCHHHHHHHHhCCCCCCCC
Confidence            45689999999999999999989994

>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: N-methyl-D-aspartate receptor subunit 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.79  E-value=0.013  Score=38.93  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=21.7

Q ss_pred             cccccccCCchhhHHHhhcCCCCCCCC
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQCKS   35 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C~~   35 (94)
                      ++.+|+++|.+++|.+||+.. ++|+.
T Consensus       264 al~~l~~~G~~~~l~~Kw~~~-~~c~~  289 (289)
T d1pb7a_         264 SILKSHENGFMEDLDKTWVRY-QECDS  289 (289)
T ss_dssp             HHHHHHHSSHHHHHHHHHTSS-SCCCC
T ss_pred             HHHHHHHCCHHHHHHHhccCC-CCCCC
Confidence            456899999999999999974 57963

>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: N-methyl-D-aspartate receptor subunit 1
species: Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]

Probab=92.22  E-value=0.012  Score=39.24  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=19.9

Q ss_pred             cccccccCCchhhHHHhhcCCCCCC
Q psy2804           9 FGNPPNNAGELSRLQKKWWIDTSQC   33 (94)
Q Consensus         9 ~~LkL~E~G~l~~L~~kW~~~~~~C   33 (94)
                      ++++|+++|++++|.+|||.  |.|
T Consensus       254 al~~l~~~G~~~~L~~KW~~--g~~  276 (277)
T d2a5sa1         254 ALLQFVGDGEMEELETLWLT--GIC  276 (277)
T ss_dssp             HHHHHHHHTHHHHHHHHHTC--CCC
T ss_pred             HHHHHHHCCHHHHHHhhhcC--CCC
Confidence            46689999999999999994  567