Psyllid ID: psy280

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MTLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTPCDKKTKDIPPVSKKTKFDADGNVIEETITIL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccEEEEEEEcc
Coil and Loop (DISEMBL)
MTLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAvdftklpndkkiEADLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETMKKFKQTKDkltimprldkdASKRFVrnalwtppesdtpcdkktkdippvskktkfdadgnvIEETITIL
Flexible Loop (DISEMBL)
MTLNLIDELLSKFINSQHDLESLVDEISEIIKQVqavdftklpndKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETmkkfkqtkdkltimprldkdaskrfvrnalwtppesdtpcdkktkdippvskktkfdadgnvIEETITIL
Low Complexity Region (SEG)
MTLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTPCDKKTKDIPPVSKKTKFDADGNVIEETITIL
Disordered region (IsUnstruct)
****LIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETMK**********************FVRNAL****************************************
Disordered Region (DISOPRED)
******D*LLSKFINSQHDLESLVDE***************LPNDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETMKKF****************ASKRFVRNA************************************TITIL
Disordered Region (DISEMBL)
MTLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTPCDKKTKDIPPVSKKTKFDADGNVIEETITIL
Disordered Region (DISPRO)
*TLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPE**************VSKKTKFDADGNVIEETITIL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKVExxxxxxxxxxxxxxxxxxxxxPRLDKDASKRFVRNALWTPPESDTPCDKKTKDIPPVSKKTKFDADGNVIEETITIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q7TSU0	141	Nuclear nucleic acid-bind	yes	N/A	0.673	0.744	0.330	6e-09
Q5ZHS3	142	Nuclear nucleic acid-bind	yes	N/A	0.730	0.802	0.316	6e-09
O35473	141	Nuclear nucleic acid-bind	yes	N/A	0.673	0.744	0.339	7e-09
Q13901	141	Nuclear nucleic acid-bind	yes	N/A	0.762	0.843	0.316	2e-08
Q5RBU4	141	Nuclear nucleic acid-bind	no	N/A	0.756	0.836	0.323	3e-08
Q32PE4	141	Nuclear nucleic acid-bind	yes	N/A	0.756	0.836	0.323	3e-08
Q3KPR1	145	Nuclear nucleic acid-bind	N/A	N/A	0.724	0.779	0.289	9e-08
Q5XJ97	148	Nuclear nucleic acid-bind	yes	N/A	0.423	0.445	0.405	2e-06

>sp|Q7TSU0|C1D_CRIGR Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus GN=C1D PE=2 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 7/112 (6%)

Query: 20  LESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--S 73
           LES +  + +++K + +V       KL   ++ + DL+  Y +NS++++ L  + V+   
Sbjct: 21  LESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKE 80

Query: 74  DFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTP 125
             VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P + +TP
Sbjct: 81  HPVKQELERIRVYMNRVKEITDKKKA-AKLDRGAASRFVKNALWEPKQKNTP 131

Plays a role in the recruitment of the RNA exosome complex to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA; this function may include MPHOSPH6. Can activate PRKDC not only in the presence of linear DNA but also in the presence of supercoiled DNA. Can induce apoptosis in a p53/TP53 dependent manner. May regulate the TRAX/TSN complex formation. Potentiates transcriptional repression by NR1D1 and THRB.
Cricetulus griseus (taxid: 10029)

>sp|Q5ZHS3|C1D_CHICK Nuclear nucleic acid-binding protein C1D OS=Gallus gallus GN=C1D PE=2 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 22/136 (16%)

Query: 2   TLNLIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSL 61
           +L  +DE+L   ++            SE++++++ ++  KL        DL+  Y +NS+
Sbjct: 24  SLTSVDEMLKTMMSVSR---------SELLQKLEPLEQAKL--------DLVSAYTLNSM 66

Query: 62  YFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
           +++ L  + ++     VK EL+RI+  M K K+  DK     +LDK A+ RFVRNALW P
Sbjct: 67  FWVYLATQGINPKEHPVKQELERIRTYMNKVKEIADKKKA-SKLDKGAASRFVRNALWEP 125

Query: 120 -PE-SDTPCDKKTKDI 133
            PE   TP   K + +
Sbjct: 126 NPENGQTPAKAKKRKM 141

Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.

Gallus gallus (taxid: 9031)

>sp|O35473|C1D_MOUSE Nuclear nucleic acid-binding protein C1D OS=Mus musculus GN=C1d PE=1 SV=1

 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 7/112 (6%)

Query: 20  LESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--S 73
           LES +  + +++K + AV       KL   ++ + DL+  Y +NS++++ L  + V+   
Sbjct: 21  LESSLGAVDDMLKTMMAVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKE 80

Query: 74  DFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTP 125
             VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P    TP
Sbjct: 81  HPVKQELERIRVYMNRVKEITDKKKA-AKLDRGAASRFVKNALWEPKAKSTP 131

Plays a role in the recruitment of the RNA exosome complex to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA; this function may include MPHOSPH6. Can activate PRKDC not only in the presence of linear DNA but also in the presence of supercoiled DNA. Can induce apoptosis in a p53/TP53 dependent manner. May regulate the TRAX/TSN complex formation. Potentiates transcriptional repression by NR1D1 and THRB.

Mus musculus (taxid: 10090)

>sp|Q13901|C1D_HUMAN Nuclear nucleic acid-binding protein C1D OS=Homo sapiens GN=C1D PE=1 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 23/142 (16%)

Query: 6   IDELLSKFINSQHDLESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSL 61
           I E LS F NS       +  + E++K + +V       KL   ++ + DL+  Y +NS+
Sbjct: 14  IHEYLSAFENS-------IGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSM 66

Query: 62  YFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
           +++ L  + V+     VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P
Sbjct: 67  FWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-GKLDRGAASRFVKNALWEP 125

Query: 120 PESDTPCDKKTKDIPPVSKKTK 141
                    K+K+   V+ K K
Sbjct: 126 ---------KSKNASKVANKGK 138

Plays a role in the recruitment of the RNA exosome complex to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA; this function may include MPHOSPH6. Can activate PRKDC not only in the presence of linear DNA but also in the presence of supercoiled DNA. Can induce apoptosis in a p53/TP53 dependent manner. May regulate the TRAX/TSN complex formation. Potentiates transcriptional repression by NR1D1 and THRB.

Homo sapiens (taxid: 9606)

>sp|Q5RBU4|C1D_PONAB Nuclear nucleic acid-binding protein C1D OS=Pongo abelii GN=C1D PE=2 SV=1

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 15/133 (11%)

Query: 6   IDELLSKFINSQHDLESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSL 61
           I E LS F NS       +  + E++K + +V       KL   ++ + DL+  Y +NS+
Sbjct: 14  IHEYLSAFENS-------IGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSM 66

Query: 62  YFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
           +++ L  + V+     VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P
Sbjct: 67  FWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-GKLDRGAASRFVKNALWEP 125

Query: 120 -PESDTPCDKKTK 131
            P++ +    K K
Sbjct: 126 KPKNASKVANKGK 138

Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA. Forms a multi-subunit complex with MPP6 and EXOSC10 and this complex along with MTR4 is required for the 3'-5' end processing of the 5.8S rRNA. Can activate PRKDC not only in the presence of linear DNA but also in the presence of supercoiled DNA. Can induce apoptosis in a p53/TP53 dependent manner. May regulate the TRAX/TSN complex formation. Potentiates transcriptional repression by NR1D1 and THRB.

Pongo abelii (taxid: 9601)

>sp|Q32PE4|C1D_BOVIN Nuclear nucleic acid-binding protein C1D OS=Bos taurus GN=C1D PE=2 SV=1

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 15/133 (11%)

Query: 6   IDELLSKFINSQHDLESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSL 61
           I E LS F NS       +  + E++K + +V       KL   ++ + DL+  Y +NS+
Sbjct: 14  IHEYLSTFENS-------IGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSM 66

Query: 62  YFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
           +++ L  + V+     VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P
Sbjct: 67  FWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-GKLDRGAASRFVKNALWEP 125

Query: 120 -PESDTPCDKKTK 131
            P++ +    K K
Sbjct: 126 KPKNASKVANKGK 138

Plays a role in the recruitment of the RNA exosome complex to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA; this function may include MPHOSPH6. Can activate PRKDC not only in the presence of linear DNA but also in the presence of supercoiled DNA. Can induce apoptosis in a p53/TP53 dependent manner. May regulate the TRAX/TSN complex formation. Potentiates transcriptional repression by NR1D1 and THRB.

Bos taurus (taxid: 9913)

>sp|Q3KPR1|C1D_XENLA Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis GN=c1d PE=2 SV=1

 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 74/138 (53%), Gaps = 25/138 (18%)

Query: 6   IDELLSKFINSQHDLESLVDEI-----SEIIKQVQAVDFTKLPNDKKIEADLLVLYAINS 60
           I E L  F NS   ++ ++ ++     SE++++++ ++  KL        DL+  Y +NS
Sbjct: 15  IHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKL--------DLVSAYTLNS 66

Query: 61  LYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWT 118
           L++I L  + ++     VK EL+RI+  M + K+  D+     RLDK A++RF+++AL  
Sbjct: 67  LFWIYLTTQGINPKEHPVKEELERIRGYMNRVKEITDRKKAA-RLDKGAARRFIKHAL-- 123

Query: 119 PPESDTPCDKKTKDIPPV 136
                  CD  +++ PP 
Sbjct: 124 -------CDPTSEEAPPA 134

Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.

Xenopus laevis (taxid: 8355)

>sp|Q5XJ97|C1D_DANRE Nuclear nucleic acid-binding protein C1D OS=Danio rerio GN=c1d PE=2 SV=1

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 51  DLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDAS 108
           DL+  YA+NS++++ L  + V+     +K EL+RI+  M K K+  D+      +DK+A+
Sbjct: 56  DLMSAYALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-AHIDKEAA 114

Query: 109 KRFVRNALW 117
            RFVRNALW
Sbjct: 115 SRFVRNALW 123

Plays a role in the recruitment of the exosome to pre-rRNA to mediate the 3'-5' end processing of the 5.8S rRNA.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
285002183	150	nuclear nucleic acid-binding protein C1D	0.903	0.94	0.333	6e-13
156542114	147	PREDICTED: nuclear nucleic acid-binding	0.615	0.653	0.373	8e-13
242008621	155	conserved hypothetical protein [Pediculu	0.615	0.619	0.387	8e-12
380017940	128	PREDICTED: nuclear nucleic acid-binding	0.506	0.617	0.432	2e-11
110760487	128	PREDICTED: nuclear nucleic acid-binding	0.506	0.617	0.432	2e-11
325302838	145	TPA_inf: DNA-binding protein C1D [Amblyo	0.589	0.634	0.4	2e-10
350395989	128	PREDICTED: nuclear nucleic acid-binding	0.506	0.617	0.419	2e-10
340730173	147	PREDICTED: nuclear nucleic acid-binding	0.506	0.537	0.419	2e-10
383862824	130	PREDICTED: nuclear nucleic acid-binding	0.506	0.607	0.370	6e-10
443708326	152	hypothetical protein CAPTEDRAFT_102365 [	0.685	0.703	0.408	8e-10

>gi|285002183|ref|NP_001165433.1| nuclear nucleic acid-binding protein C1D-like [Acyrthosiphon pisum] gi|193693054|ref|XP_001946329.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like [Acyrthosiphon pisum] gi|239790557|dbj|BAH71832.1| ACYPI001594 [Acyrthosiphon pisum]

 Score = 79.0 bits (193), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 92/150 (61%), Gaps = 9/150 (6%)

Query: 2   TLNLIDELL--SKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAIN 59
           TL+L +ELL   + + S  +L+  + +I  +++    +D+  +  ++KI+ DLL+ +A+N
Sbjct: 3   TLDLDEELLKDEELVASIQNLDHSIVDIETLLESRMDLDYNSMSVEEKIKHDLLIAFALN 62

Query: 60  SLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALW 117
           SLY++ LR+  VD  S  +K EL R++ TM   K    K  ++ R+DK A++RF+ +ALW
Sbjct: 63  SLYWVYLRLDGVDPTSHNIKRELDRVKSTMDMAKGAMAKKNML-RVDKKAAERFIDHALW 121

Query: 118 TPPESDTPCDKKTKDIPPVSKKTKFDADGN 147
           TP +      +++ ++   +KK KFD +G+
Sbjct: 122 TPEDK----KRRSHNMENPNKKIKFDENGD 147

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156542114|ref|XP_001599995.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like [Nasonia vitripennis]

 Score = 78.6 bits (192), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/99 (37%), Positives = 71/99 (71%), Gaps = 3/99 (3%)

Query: 24  VDEISEIIKQVQAVD-FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--SDFVKVEL 80
           +D+I E++K  +    + KL N++KI+ +LL+ +++NSL+++ +R + +D     +K E 
Sbjct: 25  IDQIQEVLKFAEEPGLYDKLCNEEKIKFNLLMSFSLNSLFWMYMRAEGIDPTKHQIKSEN 84

Query: 81  KRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
           +R++++M + KQ  D+ TIMPR+++DA++RFVR+ LW P
Sbjct: 85  ERLKQSMIRAKQIHDRNTIMPRINRDAAQRFVRSGLWVP 123

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008621|ref|XP_002425101.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212508766|gb|EEB12363.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 75.1 bits (183), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 62/98 (63%), Gaps = 2/98 (2%)

Query: 37  VDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTK 94
            D+  L  + K+  DLL+ +AIN+ Y+I+LR + +D  +  +K ++ RI++ M + K+  
Sbjct: 41  TDYDSLSLEDKVRFDLLLAFAINTFYWIHLRTQGIDPANHEIKHQINRIKDYMLQSKKLY 100

Query: 95  DKLTIMPRLDKDASKRFVRNALWTPPESDTPCDKKTKD 132
           DK   MP +DKDA+KRF+R+ LWTP  S +  +  T D
Sbjct: 101 DKKKFMPVIDKDAAKRFIRSGLWTPNTSSSNTELTTSD 138

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380017940|ref|XP_003692900.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like isoform 1 [Apis florea] gi|380017942|ref|XP_003692901.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like isoform 2 [Apis florea]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 39  FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDK 96
           + KL N  KIE +LL+ Y +NS++++ LR + +D     +K+E  R++++M + KQ  DK
Sbjct: 41  YEKLSNTDKIEYNLLMSYCLNSMFWMYLRAEGIDPAKHRIKLENDRLKKSMTRAKQINDK 100

Query: 97  LTIMPRLDKDASKRFVRNALW 117
            T+MP ++KDA++RFVRN LW
Sbjct: 101 KTLMPHINKDAAQRFVRNGLW 121

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110760487|ref|XP_001120945.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like isoform 1 [Apis mellifera] gi|328789892|ref|XP_003251342.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like isoform 2 [Apis mellifera]

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/81 (43%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 39  FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDK 96
           + KL N  KIE +LL+ Y +NS++++ LR + +D     +K+E  R++++M + KQ  DK
Sbjct: 41  YEKLSNTDKIEYNLLMSYCLNSMFWMYLRAEGIDPAKHRIKLENDRLKKSMTRAKQINDK 100

Query: 97  LTIMPRLDKDASKRFVRNALW 117
            T+MP ++KDA++RFVRN LW
Sbjct: 101 KTLMPHINKDAAQRFVRNGLW 121

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325302838|tpg|DAA34443.1| TPA_inf: DNA-binding protein C1D [Amblyomma variegatum]

 Score = 70.9 bits (172), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 47  KIEADLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDKLTIMPRLD 104
           K   DL +LY++NSL+++ L     D     V+ EL+R++E M + KQ  DK    P+LD
Sbjct: 51  KARLDLTLLYSLNSLFWMYLCTVGEDPKQHTVRRELERVKEYMARAKQIADKAK-APKLD 109

Query: 105 KDASKRFVRNALWTPPESDTPCDKKTKDIPPVSKK 139
             A++RFVR++LWTP  SD+  ++K    PP  K+
Sbjct: 110 AGAAQRFVRSSLWTPASSDSGANQKGNQEPPRKKR 144

Source: Amblyomma variegatum

Species: Amblyomma variegatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350395989|ref|XP_003484400.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like [Bombus impatiens] gi|350395992|ref|XP_003484401.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like [Bombus impatiens]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 39  FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDK 96
           + KL +  KI+ +LL+ Y +NS++++ LR + +D     +K E  R++ +M + KQ  DK
Sbjct: 41  YEKLSDTDKIQYNLLMSYCLNSVFWMYLRAEGIDPAKHQIKSENDRLKRSMTRAKQINDK 100

Query: 97  LTIMPRLDKDASKRFVRNALW 117
            T MPR++KDA++RFVRN LW
Sbjct: 101 NTFMPRVNKDAAQRFVRNGLW 121

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340730173|ref|XP_003403361.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like [Bombus terrestris]

 Score = 70.5 bits (171), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/81 (41%), Positives = 55/81 (67%), Gaps = 2/81 (2%)

Query: 39  FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDK 96
           + KL +  KI+ +LL+ Y +NS++++ LR + +D     +K E  R++ +M + KQ  DK
Sbjct: 41  YEKLSDTDKIQYNLLMSYCLNSVFWMYLRAEGIDPAKHQIKSENDRLKRSMTRAKQINDK 100

Query: 97  LTIMPRLDKDASKRFVRNALW 117
            T MPR++KDA++RFVRN LW
Sbjct: 101 NTFMPRVNKDAAQRFVRNGLW 121

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862824|ref|XP_003706883.1| PREDICTED: nuclear nucleic acid-binding protein C1D-like [Megachile rotundata]

 Score = 68.9 bits (167), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 57/81 (70%), Gaps = 2/81 (2%)

Query: 39  FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVD--SDFVKVELKRIQETMKKFKQTKDK 96
           + KL N+ KI+ +LL+ Y +NS++++ LR + +D     +K+E  R++++M + KQ  D+
Sbjct: 41  YEKLSNEDKIQYNLLMSYCLNSMFWMYLRAEGIDPTKHQIKLENDRLKKSMMRAKQINDR 100

Query: 97  LTIMPRLDKDASKRFVRNALW 117
            T+MPR++K+ ++R +RN LW
Sbjct: 101 NTLMPRVNKEVAQRLIRNGLW 121

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443708326|gb|ELU03495.1| hypothetical protein CAPTEDRAFT_102365 [Capitella teleta]

 Score = 68.6 bits (166), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 47/115 (40%), Positives = 70/115 (60%), Gaps = 8/115 (6%)

Query: 6   IDELLSKFINSQHDLESLVDEISEI-IKQVQAVDFTKLPNDKKIEADLLVLYAINSLY-- 62
           + E LS F  S  + E L+  + E  + QVQA D   L    K + +L+ +YA+NSLY  
Sbjct: 12  LQERLSSFDESLSNFEELIKSLHETPLNQVQA-DMKPL---DKAKLELVGVYALNSLYWM 67

Query: 63  FINLRIKHVDSDFVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALW 117
           ++N+R ++     ++ EL+R++  MK+ K   DK    P+LDKDASKRFVR+ALW
Sbjct: 68  YLNIRGENPKEHSIRQELERVKSYMKRVKDITDK-EKAPKLDKDASKRFVRSALW 121

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
UNIPROTKB|F1NRP5	142	C1D "Nuclear nucleic acid-bind	0.705	0.774	0.352	1.7e-11
UNIPROTKB|Q5ZHS3	142	C1D "Nuclear nucleic acid-bind	0.705	0.774	0.344	5.8e-11
MGI|MGI:1927354	141	C1d "C1D nuclear receptor co-r	0.673	0.744	0.339	9.4e-11
RGD|1560600	141	C1d "C1D nuclear receptor co-r	0.673	0.744	0.330	1.5e-10
ZFIN|ZDB-GENE-041024-8	148	c1d "C1D nuclear receptor co-r	0.807	0.851	0.318	1.5e-10
UNIPROTKB|Q32PE4	141	C1D "Nuclear nucleic acid-bind	0.775	0.858	0.338	8.4e-10
UNIPROTKB|Q13901	141	C1D "Nuclear nucleic acid-bind	0.698	0.773	0.350	1.8e-09
UNIPROTKB|F1SJ03	141	C1D "Uncharacterized protein"	0.775	0.858	0.292	1.6e-06
FB|FBgn0030711	159	Rrp47 [Drosophila melanogaster	0.679	0.666	0.274	0.00012
ASPGD|ASPL0000073533	243	AN10590 [Emericella nidulans (	0.621	0.399	0.313	0.00032

UNIPROTKB|F1NRP5 C1D "Nuclear nucleic acid-binding protein C1D" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 42/119 (35%), Positives = 67/119 (56%)

Query:    21 ESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDF- 75
             E  +  + E++K + +V       KL   ++ + DL+  Y +NS++++ L  + ++    
Sbjct:    22 EKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVYLATQGINPKEH 81

Query:    76 -VKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP-PESD-TPCDKKTK 131
              VK EL+RI+  M K K+  DK     +LDK A+ RFVRNALW P PE+D TP   K +
Sbjct:    82 PVKQELERIRTYMNKVKEIADKKKAS-KLDKGAASRFVRNALWEPNPENDQTPTKAKKR 139

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q5ZHS3 C1D "Nuclear nucleic acid-binding protein C1D" [Gallus gallus (taxid:9031)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 41/119 (34%), Positives = 66/119 (55%)

Query:    21 ESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDF- 75
             E  +  + E++K + +V       KL   ++ + DL+  Y +NS++++ L  + ++    
Sbjct:    22 EKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVYLATQGINPKEH 81

Query:    76 -VKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP-PES-DTPCDKKTK 131
              VK EL+RI+  M K K+  DK     +LDK A+ RFVRNALW P PE+  TP   K +
Sbjct:    82 PVKQELERIRTYMNKVKEIADKKKAS-KLDKGAASRFVRNALWEPNPENGQTPAKAKKR 139

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:1927354 C1d "C1D nuclear receptor co-repressor" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 38/112 (33%), Positives = 63/112 (56%)

Query:    20 LESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDF 75
             LES +  + +++K + AV       KL   ++ + DL+  Y +NS++++ L  + V+   
Sbjct:    21 LESSLGAVDDMLKTMMAVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKE 80

Query:    76 --VKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTP 125
               VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P    TP
Sbjct:    81 HPVKQELERIRVYMNRVKEITDKKKAA-KLDRGAASRFVKNALWEPKAKSTP 131

GO:0000460 "maturation of 5.8S rRNA" evidence=ISO

GO:0003677 "DNA binding" evidence=IDA

GO:0003714 "transcription corepressor activity" evidence=IDA

GO:0003723 "RNA binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IDA

GO:0017053 "transcriptional repressor complex" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

RGD|1560600 C1d "C1D nuclear receptor co-repressor" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 37/112 (33%), Positives = 64/112 (57%)

Query:    20 LESLVDEISEIIKQVQAVD----FTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDF 75
             LES +  + +++K + +V       KL   ++ + DL+  Y +NS++++ L  + V+   
Sbjct:    21 LESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVYLATQGVNPKE 80

Query:    76 --VKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTP 125
               VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P   +TP
Sbjct:    81 HPVKQELERIRVYMNRVKEITDKKKAA-KLDRGAASRFVKNALWEPKPKNTP 131

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003714 "transcription corepressor activity" evidence=IEA;ISO

GO:0003723 "RNA binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA;ISO

GO:0017053 "transcriptional repressor complex" evidence=IEA;ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

ZFIN|ZDB-GENE-041024-8 c1d "C1D nuclear receptor co-repressor" [Danio rerio (taxid:7955)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 44/138 (31%), Positives = 79/138 (57%)

Query:     6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFIN 65
             I++ L+ F +S   ++++V  +  + +  + +   KL   ++ + DL+  YA+NS++++ 
Sbjct:    14 IEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLL---KLDPLEQAKLDLMSAYALNSMFWMY 70

Query:    66 LRIKHVD-SDF-VKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESD 123
             L  + V+  D  +K EL+RI+  M K K+  D+      +DK+A+ RFVRNALW   ++D
Sbjct:    71 LVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKAA-HIDKEAASRFVRNALW---DAD 126

Query:   124 TPCDKKTKDIPPVSKKTK 141
                DKK KD     +K K
Sbjct:   127 ---DKKRKDKTEHQQKGK 141

GO:0003677 "DNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q32PE4 C1D "Nuclear nucleic acid-binding protein C1D" [Bos taurus (taxid:9913)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 44/130 (33%), Positives = 70/130 (53%)

Query:     6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVDFT-KLPNDKKIEADLLVLYAINSLYFI 64
             I E LS F NS       VDE+ + +  V   +   KL   ++ + DL+  Y +NS++++
Sbjct:    14 IHEYLSTFENSI----GAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWV 69

Query:    65 NLRIKHVDSDF--VKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP-PE 121
              L  + V+     VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P P+
Sbjct:    70 YLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-GKLDRGAASRFVKNALWEPKPK 128

Query:   122 SDTPCDKKTK 131
             + +    K K
Sbjct:   129 NASKVANKGK 138

GO:0005730 "nucleolus" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q13901 C1D "Nuclear nucleic acid-binding protein C1D" [Homo sapiens (taxid:9606)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 41/117 (35%), Positives = 64/117 (54%)

Query:     6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVDFT-KLPNDKKIEADLLVLYAINSLYFI 64
             I E LS F NS       VDE+ + +  V   +   KL   ++ + DL+  Y +NS++++
Sbjct:    14 IHEYLSAFENSI----GAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWV 69

Query:    65 NLRIKHVDSDF--VKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP 119
              L  + V+     VK EL+RI+  M + K+  DK     +LD+ A+ RFV+NALW P
Sbjct:    70 YLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKA-GKLDRGAASRFVKNALWEP 125

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0003723 "RNA binding" evidence=IDA

GO:0000176 "nuclear exosome (RNase complex)" evidence=TAS

GO:0000460 "maturation of 5.8S rRNA" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1SJ03 C1D "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 38/130 (29%), Positives = 68/130 (52%)

Query:     6 IDELLSKFINSQHDLESLVDEISEIIKQVQAVDFT-KLPNDKKIEADLLVLYAINSLYFI 64
             I E LS F NS       VDE+ + +  V   +   KL   ++ + DL+  Y +NS++++
Sbjct:    14 IHECLSTFENSI----GAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWV 69

Query:    65 NLRIKHVDSDF--VKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTP-PE 121
              L  + V+     VK EL +I   +   +++  + +++  L + A+ RFV+NALW P P+
Sbjct:    70 YLATQGVNPKEHPVKQELGKINLVLNIIRESFLE-SLVGMLQRGAASRFVKNALWEPKPK 128

Query:   122 SDTPCDKKTK 131
             + +    K K
Sbjct:   129 NASKVANKGK 138

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0017053 "transcriptional repressor complex" evidence=IEA

GO:0016922 "ligand-dependent nuclear receptor binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003714 "transcription corepressor activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000460 "maturation of 5.8S rRNA" evidence=IEA

FB|FBgn0030711 Rrp47 [Drosophila melanogaster (taxid:7227)]

 Score = 102 (41.0 bits), Expect = 0.00012, P = 0.00012
 Identities = 31/113 (27%), Positives = 62/113 (54%)

Query:     6 IDELLSKFINSQHDLESLVDEISEI---IKQVQAVDFTKLPN-DKKIEADLLVLYAINSL 61
             +D  L +  N QH L++    I  +    ++  A+   +  N +++I+ D  ++Y  ++L
Sbjct:    18 LDTSLREDENMQHILKTFYSSIELLEADTEKALALQAERTLNTNEQIKLDSYLVYLNSTL 77

Query:    62 YFINLRIKHVDSD--FVKVELKRIQETMKKFKQTKDKLTIMPRLDKDASKRFV 112
             +FI L+++  D+    V  +L+R ++ + + K+  D L   PRLD  A+KRF+
Sbjct:    78 FFIYLKLQGEDASNHAVMHDLRRTRDLLARDKKINDALAA-PRLDMPAAKRFI 129

GO:0010468 "regulation of gene expression" evidence=IMP

ASPGD|ASPL0000073533 AN10590 [Emericella nidulans (taxid:162425)]

 Score = 104 (41.7 bits), Expect = 0.00032, P = 0.00032
 Identities = 32/102 (31%), Positives = 54/102 (52%)

Query:    19 DLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSDFVKV 78
             D++ L + I+ I++        KLP   K +  ++  YA+ SL F  LR+  V +    V
Sbjct:    16 DVDDLEEAIAPILQSTVVETSKKLPVLDKAKFHVMTAYALESLVFSYLRLHGVKATEHPV 75

Query:    79 --ELKRIQETMKKFK--QTKDKLTIMPRLDKDASKRFVRNAL 116
               ELKR+++   K K  +T+ +   M  LDK A+ RF+++ L
Sbjct:    76 YRELKRVKQYFDKIKALETEPEQRTMV-LDKQAAGRFIKHGL 116


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.135   0.372    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       156   0.00073  106 3  11 22  0.37    32
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  555 (59 KB)
  Total size of DFA:  121 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.49u 0.08s 18.57t   Elapsed:  00:00:03
  Total cpu time:  18.49u 0.08s 18.57t   Elapsed:  00:00:03
  Start:  Thu Aug 15 11:51:06 2013   End:  Thu Aug 15 11:51:09 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35473	C1D_MOUSE	No assigned EC number	0.3392	0.6730	0.7446	yes	N/A
Q13901	C1D_HUMAN	No assigned EC number	0.3169	0.7628	0.8439	yes	N/A
Q32PE4	C1D_BOVIN	No assigned EC number	0.3233	0.7564	0.8368	yes	N/A
Q7TSU0	C1D_CRIGR	No assigned EC number	0.3303	0.6730	0.7446	yes	N/A
Q5ZHS3	C1D_CHICK	No assigned EC number	0.3161	0.7307	0.8028	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
pfam04000	81	pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family	5e-04

>gnl|CDD|217836 pfam04000, Sas10_Utp3, Sas10/Utp3/C1D family

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 8/87 (9%)

Query: 5  LIDELLSKFINSQHDLESLVDEISEIIKQVQAVDFTKLPNDKKIEADLLVLYAINSLYFI 64
          L++EL       +  L+ L+ ++ E   ++            K + +LL+ Y IN L+++
Sbjct: 1  LLEELSKSLDELEESLKPLLKKVKEKESELPPASL------LKAKNELLLAYLINLLFYL 54

Query: 65 NLRIKHVDSDF--VKVELKRIQETMKK 89
           L++  VD     V  EL R++  ++K
Sbjct: 55 LLKLSGVDIKDHPVMEELVRLRVYLEK 81

This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex. It also includes the human C1D protein and Saccharomyces cerevisiae YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs, and Sas10 which has been identified as a regulator of chromatin silencing. This family also includes the human protein Neuroguidin an initiation factor 4E (eIF4E) binding protein. Length = 81

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
KOG4835|consensus	144		99.98
PF04000	85	Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR00	99.71

>KOG4835|consensus

Probab=99.98  E-value=2.5e-32  Score=211.78  Aligned_cols=131  Identities=31%  Similarity=0.519  Sum_probs=111.2

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH----hhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCCch--hHHHHH
Q psy280            7 DELLSKFINSQHDLESLVDEISEIIKQVQAV----DFTKLPNDKKIEADLLVLYAINSLYFINLRIKHVDSD--FVKVEL   80 (156)
Q Consensus         7 ~~~~~~f~~~l~~l~~sl~~Le~~L~~ll~~----~~~~lsple~akl~l~laY~lnSL~~~yLKt~Gvdp~--pI~~EL   80 (156)
                      ++++.+.++.|..|...|++|++.|+.+.+.    ....+. +||||++++++|+++||||+||+++|+||+  |||+||
T Consensus         5 ~~~p~~l~e~ln~f~~~l~~l~~~le~~~s~~e~e~l~sl~-~EqAKld~~~~ya~~sl~~~~l~~kG~da~dh~V~~EL   83 (144)
T KOG4835|consen    5 DPEPESLIEYLNKFLDNLEELKPPLEDMESISELEELRSLL-LEQAKLDLTLAYAINSLFWSFLKLKGVDASDHPVLQEL   83 (144)
T ss_pred             CcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHH
Confidence            3455566666666688888898888888887    333455 899999999999999999999999999999  999999


Q ss_pred             HHHHHHHHHHHhhhcccCCCccccHHHHHHHHHhhCCCCCCCCCCcCCCCCCCCCCCCCcccCCC
Q psy280           81 KRIQETMKKFKQTKDKLTIMPRLDKDASKRFVRNALWTPPESDTPCDKKTKDIPPVSKKTKFDAD  145 (156)
Q Consensus        81 ~RVK~Ym~KiK~~e~~~~~~p~ld~~AAkRfI~~aL~~~~~~~~~~~~~~~~~~~~~k~~kf~~~  145 (156)
                      +|||.||.|+|++.++. ..|++|++||+|||+|+||+.+...+..      .....||.||..+
T Consensus        84 ~Rvk~y~~k~Kqi~d~~-~a~~l~~~aA~rfI~n~l~~~~~~~~s~------~~~~~K~~ks~~~  141 (144)
T KOG4835|consen   84 ERVKVYMAKIKQINDRV-KAPRLNRQAAKRFISNSLWNQPEVAKSS------ATRIKKHHKSEND  141 (144)
T ss_pred             HHHHHHHHHHHHHHhhc-cchhhhHHHHHHHHHhhcccCcchhHHH------HHHHHhccccccc
Confidence            99999999999999999 7999999999999999999988776432      3456677777765

>PF04000 Sas10_Utp3: Sas10/Utp3/C1D family; InterPro: IPR007146 This family contains Utp3 and LCP5 which are components of the U3 ribonucleoprotein complex []

Probab=99.71  E-value=7.1e-17  Score=112.35  Aligned_cols=73  Identities=27%  Similarity=0.409  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh----hcCCCh-----HHHHHHHHHHHHHHHHHHHHHHHhcCCCch--hHHHHHHHHHH
Q psy280           17 QHDLESLVDEISEIIKQVQAVD----FTKLPN-----DKKIEADLLVLYAINSLYFINLRIKHVDSD--FVKVELKRIQE   85 (156)
Q Consensus        17 l~~l~~sl~~Le~~L~~ll~~~----~~~lsp-----le~akl~l~laY~lnSL~~~yLKt~Gvdp~--pI~~EL~RVK~   85 (156)
                      +++|.++++++++.+++++...    .+.+++     ++++|.+++++|+.|++||+|||++|+++.  ||++||.|+|.
T Consensus         2 l~~l~~~l~~~~~~l~~l~~~~~~~~~~~l~~~~g~sl~~~K~~~llaY~~~~~~~~~lk~~g~~~~~hpv~~~L~r~r~   81 (85)
T PF04000_consen    2 LKELSESLDEVEESLQPLLEKVKEEKEEELSPSDGISLLQAKNQLLLAYIINLLFYMYLKLSGVDPKDHPVMKELVRIRQ   81 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHH
Confidence            5677999999999999999773    578898     999999999999999999999999999999  99999999999


Q ss_pred             HHHH
Q psy280           86 TMKK   89 (156)
Q Consensus        86 Ym~K   89 (156)
                      ||+|
T Consensus        82 ~leK   85 (85)
T PF04000_consen   82 YLEK   85 (85)
T ss_pred             HHcC
Confidence            9986

It also includes the Homo sapiens (Human) C1D protein and Saccharomyces cerevisiae (Baker's yeast) YHR081W (rrp47), an exosome-associated protein required for the 3' processing of stable RNAs [] and Sas10 which has been identified as a regulator of chromatin silencing []. This entry also includes the human protein Neuroguidin, an initiation factor 4E (eIF4E)-binding protein [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00