Psyllid ID: psy2820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--
Protein Sequence
MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MLVRQLEEELRMrlrgpnlemqNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK
Flexible Loop (DISEMBL)
MLVRQLEEELRmrlrgpnlemqNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEmlqnkgvglk
Low Complexity Region (SEG)
MLVRQleeelrmrlrGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK
Disordered region (IsUnstruct)
**********************NQIEVLYTENEHLTREIGILRDTIKELELRI*****************************
Disordered Region (DISOPRED)
*LV*Q**EE*****************VLYTENEHLTREIGILRDTIKELELRI************SIKKLLEM**N******
Disordered Region (DISEMBL)
MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK
Disordered Region (DISPRO)
MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLVRQLEEELRMRLRGPxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGVGLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	82	2.2.26 [Sep-21-2011]
Q811U3	948	ELKS/Rab6-interacting/CAS	yes	N/A	0.670	0.058	0.654	2e-12
Q8IUD2	1116	ELKS/Rab6-interacting/CAS	yes	N/A	0.670	0.049	0.654	2e-12
Q99MI1	1120	ELKS/Rab6-interacting/CAS	no	N/A	0.670	0.049	0.654	2e-12
Q8K3M6	957	ERC protein 2 OS=Rattus n	no	N/A	0.670	0.057	0.636	3e-11
Q6PH08	957	ERC protein 2 OS=Mus musc	no	N/A	0.670	0.057	0.636	4e-11
O15083	957	ERC protein 2 OS=Homo sap	no	N/A	0.670	0.057	0.636	4e-11

>sp|Q811U3|RB6I2_RAT ELKS/Rab6-interacting/CAST family member 1 OS=Rattus norvegicus GN=Erc1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 28  LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
           L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  K
Sbjct: 270 LHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAK 324

Regulatory subunit of the IKK complex. Probably recruits IkappaBalpha/NFKBIA to the complex (By similarity). May be involved in the organization of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. May be involved in vesicle trafficking at the CAZ. May be involved in Rab-6 regulated endosomes to Golgi transport.
Rattus norvegicus (taxid: 10116)

>sp|Q8IUD2|RB6I2_HUMAN ELKS/Rab6-interacting/CAST family member 1 OS=Homo sapiens GN=ERC1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 28  LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
           L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  K
Sbjct: 270 LHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAK 324

Regulatory subunit of the IKK complex. Probably recruits IkappaBalpha/NFKBIA to the complex. May be involved in the organization of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. May be involved in vesicle trafficking at the CAZ. May be involved in Rab-6 regulated endosomes to Golgi transport.

Homo sapiens (taxid: 9606)

>sp|Q99MI1|RB6I2_MOUSE ELKS/Rab6-interacting/CAST family member 1 OS=Mus musculus GN=Erc1 PE=1 SV=1

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/55 (65%), Positives = 46/55 (83%)

Query: 28  LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
           L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  K
Sbjct: 270 LHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSAK 324

Regulatory subunit of the IKK complex. Probably recruits IkappaBalpha/NFKBIA to the complex (By similarity). May be involved in the organization of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. May be involved in vesicle trafficking at the CAZ. May be involved in Rab-6 regulated endosomes to Golgi transport.

Mus musculus (taxid: 10090)

>sp|Q8K3M6|ERC2_RAT ERC protein 2 OS=Rattus norvegicus GN=Erc2 PE=1 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 28  LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
           L  E++   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  K
Sbjct: 266 LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK 320

Thought to be involved in the organization of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. Seems to act together with BSN. May recruit liprin-alpha proteins to the CAZ.

Rattus norvegicus (taxid: 10116)

>sp|Q6PH08|ERC2_MOUSE ERC protein 2 OS=Mus musculus GN=Erc2 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 28  LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
           L  E++   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  K
Sbjct: 266 LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK 320

Thought to be involved in the organization of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. Seems to act together with BSN. May recruit liprin-alpha proteins to the CAZ.

Mus musculus (taxid: 10090)

>sp|O15083|ERC2_HUMAN ERC protein 2 OS=Homo sapiens GN=ERC2 PE=1 SV=3

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query: 28  LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
           L  E++   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  K
Sbjct: 266 LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK 320

Thought to be involved in the organization of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. Seems to act together with BSN. May recruit liprin-alpha proteins to the CAZ.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
189239658	1703	PREDICTED: similar to bruchpilot CG34146	0.975	0.046	0.887	9e-33
345479003	1869	PREDICTED: hypothetical protein LOC10012	0.975	0.042	0.875	1e-32
307172616	114	ELKS/RAB6-interacting/CAST family member	0.975	0.701	0.887	4e-32
270011214	278	hypothetical protein TcasGA2_TC030642 [T	0.975	0.287	0.887	4e-32
332017521	121	ELKS/RAB6-interacting/CAST family member	0.975	0.661	0.875	5e-32
365733625	1908	bruchpilot [Apis mellifera]	0.963	0.041	0.873	7e-32
322782947	89	hypothetical protein SINV_07799 [Solenop	0.975	0.898	0.875	2e-31
307208456	88	ELKS/RAB6-interacting/CAST family member	0.975	0.909	0.85	1e-30
170065377	101	rab6-interacting protein 2/elks/erc/cast	0.987	0.801	0.839	3e-30
157118395	288	rab6-interacting protein 2/elks/erc/cast	0.975	0.277	0.85	4e-30

>gi|189239658|ref|XP_973199.2| PREDICTED: similar to bruchpilot CG34146-PB [Tribolium castaneum]

 Score =  144 bits (362), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/80 (88%), Positives = 76/80 (95%)

Query: 1   MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
           MLVRQLEEELRMR+RGP++EMQ Q+E LY ENEHLTREI ILRDTIKELELRIETQKQTL
Sbjct: 167 MLVRQLEEELRMRMRGPSIEMQQQMEALYQENEHLTREIAILRDTIKELELRIETQKQTL 226

Query: 61  QARDESIKKLLEMLQNKGVG 80
           QARDESIKKLLEMLQNKG+G
Sbjct: 227 QARDESIKKLLEMLQNKGMG 246

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479003|ref|XP_001606987.2| PREDICTED: hypothetical protein LOC100123358 [Nasonia vitripennis]

 Score =  143 bits (361), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 77/80 (96%)

Query: 1   MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
           M+VRQLEEELR+R+RGP++EMQ Q+EVLY ENEHLTREI ILRDTIKELELRIETQKQTL
Sbjct: 301 MMVRQLEEELRLRMRGPSVEMQQQMEVLYNENEHLTREIAILRDTIKELELRIETQKQTL 360

Query: 61  QARDESIKKLLEMLQNKGVG 80
           QARDESIKKLLEMLQNKG+G
Sbjct: 361 QARDESIKKLLEMLQNKGMG 380

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172616|gb|EFN63975.1| ELKS/RAB6-interacting/CAST family member 1 [Camponotus floridanus]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/80 (88%), Positives = 77/80 (96%)

Query: 1  MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
          M+VRQLEEELRMR+RGPN+E+Q Q+EVLY ENEHLTREI ILRDTIKELELRIETQKQTL
Sbjct: 1  MMVRQLEEELRMRMRGPNVEIQQQMEVLYNENEHLTREIAILRDTIKELELRIETQKQTL 60

Query: 61 QARDESIKKLLEMLQNKGVG 80
          QARDESIKKLLEMLQNKG+G
Sbjct: 61 QARDESIKKLLEMLQNKGMG 80

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011214|gb|EFA07662.1| hypothetical protein TcasGA2_TC030642 [Tribolium castaneum]

 Score =  141 bits (356), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/80 (88%), Positives = 76/80 (95%)

Query: 1   MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
           MLVRQLEEELRMR+RGP++EMQ Q+E LY ENEHLTREI ILRDTIKELELRIETQKQTL
Sbjct: 160 MLVRQLEEELRMRMRGPSIEMQQQMEALYQENEHLTREIAILRDTIKELELRIETQKQTL 219

Query: 61  QARDESIKKLLEMLQNKGVG 80
           QARDESIKKLLEMLQNKG+G
Sbjct: 220 QARDESIKKLLEMLQNKGMG 239

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017521|gb|EGI58232.1| ELKS/RAB6-interacting/CAST family member 1 [Acromyrmex echinatior]

 Score =  141 bits (355), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 77/80 (96%)

Query: 1  MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
          ++VRQLEEELRMR+RGP++EMQ Q+EVLY ENEHLTREI ILRDTIKELELRIETQKQTL
Sbjct: 11 IMVRQLEEELRMRMRGPSVEMQQQMEVLYNENEHLTREIAILRDTIKELELRIETQKQTL 70

Query: 61 QARDESIKKLLEMLQNKGVG 80
          QARDESIKKLLEMLQNKG+G
Sbjct: 71 QARDESIKKLLEMLQNKGMG 90

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|365733625|ref|NP_001242968.1| bruchpilot [Apis mellifera]

 Score =  140 bits (354), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 69/79 (87%), Positives = 76/79 (96%)

Query: 1   MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
           M+VRQLEEELRMR+RGP++EMQ Q+EVLY ENEHLTREI ILRDTI+ELELRIETQKQTL
Sbjct: 266 MMVRQLEEELRMRMRGPSVEMQQQMEVLYNENEHLTREIAILRDTIRELELRIETQKQTL 325

Query: 61  QARDESIKKLLEMLQNKGV 79
           QARDESIKKLLEMLQNKG+
Sbjct: 326 QARDESIKKLLEMLQNKGM 344

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322782947|gb|EFZ10665.1| hypothetical protein SINV_07799 [Solenopsis invicta]

 Score =  139 bits (350), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 77/80 (96%)

Query: 1  MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
          ++VRQLEEELRMR+RGP++EMQ Q+EVLY ENEHLTREI ILRDTIKELELRIETQKQTL
Sbjct: 1  IMVRQLEEELRMRMRGPSVEMQQQMEVLYNENEHLTREIAILRDTIKELELRIETQKQTL 60

Query: 61 QARDESIKKLLEMLQNKGVG 80
          QARDESIKKLLEMLQNKG+G
Sbjct: 61 QARDESIKKLLEMLQNKGMG 80

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208456|gb|EFN85823.1| ELKS/RAB6-interacting/CAST family member 1 [Harpegnathos saltator]

 Score =  136 bits (343), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 76/80 (95%)

Query: 2  LVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ 61
          +VRQLEEELRMR+RGP++E+Q Q+EVLY ENEHLTREI ILRDTIKELELRIETQKQTLQ
Sbjct: 1  MVRQLEEELRMRMRGPSVEIQQQMEVLYNENEHLTREIAILRDTIKELELRIETQKQTLQ 60

Query: 62 ARDESIKKLLEMLQNKGVGL 81
          ARDESIKKLLEMLQNKG+ +
Sbjct: 61 ARDESIKKLLEMLQNKGMAV 80

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170065377|ref|XP_001867913.1| rab6-interacting protein 2/elks/erc/cast [Culex quinquefasciatus] gi|167882491|gb|EDS45874.1| rab6-interacting protein 2/elks/erc/cast [Culex quinquefasciatus]

 Score =  135 bits (340), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 68/81 (83%), Positives = 74/81 (91%)

Query: 1  MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
          MLVRQLEEELR+R+R PN+EMQ Q+E LY ENEHL REI ILRDTIKELELRIETQKQTL
Sbjct: 1  MLVRQLEEELRLRMRAPNIEMQQQMEALYAENEHLQREISILRDTIKELELRIETQKQTL 60

Query: 61 QARDESIKKLLEMLQNKGVGL 81
          QARDESIKKLLEMLQ+KG+ L
Sbjct: 61 QARDESIKKLLEMLQSKGMAL 81

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157118395|ref|XP_001659094.1| rab6-interacting protein 2/elks/erc/cast [Aedes aegypti] gi|108875749|gb|EAT39974.1| AAEL008270-PA, partial [Aedes aegypti]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 74/80 (92%)

Query: 1   MLVRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
           MLVRQLEEELR+R+R PN+EMQ Q+E LY ENEHL REI ILRDTIKELELRIETQKQTL
Sbjct: 188 MLVRQLEEELRLRMRAPNIEMQQQMEALYAENEHLQREISILRDTIKELELRIETQKQTL 247

Query: 61  QARDESIKKLLEMLQNKGVG 80
           QARDESIKKLLEMLQ+KG+G
Sbjct: 248 QARDESIKKLLEMLQSKGMG 267

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	82
FB|FBgn0259246	1786	brp "bruchpilot" [Drosophila m	0.975	0.044	0.675	8.9e-21
UNIPROTKB|E1BQR7	859	ERC1 "Uncharacterized protein"	0.743	0.071	0.606	2.6e-13
UNIPROTKB|F1SHS4	887	ERC1 "Uncharacterized protein"	0.743	0.068	0.590	9.4e-13
UNIPROTKB|E2QZC5	927	ERC1 "Uncharacterized protein"	0.743	0.065	0.590	1e-12
RGD|628733	948	Erc1 "ELKS/RAB6-interacting/CA	0.743	0.064	0.590	1e-12
UNIPROTKB|Q811U3	948	Erc1 "ELKS/Rab6-interacting/CA	0.743	0.064	0.590	1e-12
UNIPROTKB|Q8IUD2	1116	ERC1 "ELKS/Rab6-interacting/CA	0.743	0.054	0.590	1.3e-12
UNIPROTKB|E1BPW2	1120	ERC1 "Uncharacterized protein"	0.743	0.054	0.590	1.3e-12
MGI|MGI:2151013	1120	Erc1 "ELKS/RAB6-interacting/CA	0.743	0.054	0.590	1.3e-12
UNIPROTKB|O15083	957	ERC2 "ERC protein 2" [Homo sap	0.670	0.057	0.636	1.2e-11

FB|FBgn0259246 brp "bruchpilot" [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 8.9e-21, P = 8.9e-21
 Identities = 54/80 (67%), Positives = 61/80 (76%)

Query:     1 MLVRQXXXXXXXXXXGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTL 60
             MLVRQ           PNLEMQ Q+E +Y EN+HL REI ILR+TIK+LE R+ETQKQTL
Sbjct:   233 MLVRQLEEELRLRMRQPNLEMQQQMEAIYAENDHLQREISILRETIKDLECRVETQKQTL 292

Query:    61 QARDESIKKLLEMLQNKGVG 80
              ARDESIKKLLEMLQ KG+G
Sbjct:   293 IARDESIKKLLEMLQAKGMG 312

GO:0005262 "calcium channel activity" evidence=IMP

GO:0007269 "neurotransmitter secretion" evidence=IMP

GO:0048790 "maintenance of presynaptic active zone structure" evidence=IMP

GO:0048167 "regulation of synaptic plasticity" evidence=IMP

GO:0008344 "adult locomotory behavior" evidence=IMP

GO:0048786 "presynaptic active zone" evidence=IDA

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0042734 "presynaptic membrane" evidence=IDA

GO:0007268 "synaptic transmission" evidence=IDA;IMP

GO:0007274 "neuromuscular synaptic transmission" evidence=IMP

GO:0048789 "cytoskeletal matrix organization at active zone" evidence=IMP

GO:0048788 "presynaptic cytoskeletal matrix assembled at active zones" evidence=IDA

GO:0007615 "anesthesia-resistant memory" evidence=IDA

GO:0007614 "short-term memory" evidence=IDA

UNIPROTKB|E1BQR7 ERC1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 186 (70.5 bits), Expect = 2.6e-13, P = 2.6e-13
 Identities = 37/61 (60%), Positives = 49/61 (80%)

Query:    22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
             +   + L+TE+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  
Sbjct:   264 EENFQRLHTEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSA 323

Query:    82 K 82
             K
Sbjct:   324 K 324

GO:0007252 "I-kappaB phosphorylation" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

UNIPROTKB|F1SHS4 ERC1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 181 (68.8 bits), Expect = 9.4e-13, P = 9.4e-13
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query:    22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
             +   + L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  
Sbjct:   264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSA 323

Query:    82 K 82
             K
Sbjct:   324 K 324

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=IEA

UNIPROTKB|E2QZC5 ERC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query:    22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
             +   + L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  
Sbjct:   264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSA 323

Query:    82 K 82
             K
Sbjct:   324 K 324

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=IEA

RGD|628733 Erc1 "ELKS/RAB6-interacting/CAST family member 1" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query:    22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
             +   + L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  
Sbjct:   264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSA 323

Query:    82 K 82
             K
Sbjct:   324 K 324

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0007252 "I-kappaB phosphorylation" evidence=IEA;ISO

GO:0008385 "IkappaB kinase complex" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA;ISO

GO:0030165 "PDZ domain binding" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA;ISO

UNIPROTKB|Q811U3 Erc1 "ELKS/Rab6-interacting/CAST family member 1" [Rattus norvegicus (taxid:10116)]

 Score = 181 (68.8 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query:    22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
             +   + L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  
Sbjct:   264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSA 323

Query:    82 K 82
             K
Sbjct:   324 K 324

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q8IUD2 ERC1 "ELKS/Rab6-interacting/CAST family member 1" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query:    22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
             +   + L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  
Sbjct:   264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSA 323

Query:    82 K 82
             K
Sbjct:   324 K 324

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042734 "presynaptic membrane" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0051092 "positive regulation of NF-kappaB transcription factor activity" evidence=TAS

GO:0007275 "multicellular organismal development" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0007252 "I-kappaB phosphorylation" evidence=IDA

GO:0008385 "IkappaB kinase complex" evidence=IDA

GO:0043522 "leucine zipper domain binding" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

UNIPROTKB|E1BPW2 ERC1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query:    22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
             +   + L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  
Sbjct:   264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSA 323

Query:    82 K 82
             K
Sbjct:   324 K 324

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0008385 "IkappaB kinase complex" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=IEA

MGI|MGI:2151013 Erc1 "ELKS/RAB6-interacting/CAST family member 1" [Mus musculus (taxid:10090)]

 Score = 181 (68.8 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 36/61 (59%), Positives = 48/61 (78%)

Query:    22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
             +   + L+ E+E   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  
Sbjct:   264 EENFQRLHAEHERQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLSA 323

Query:    82 K 82
             K
Sbjct:   324 K 324

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0007252 "I-kappaB phosphorylation" evidence=ISO

GO:0008385 "IkappaB kinase complex" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

UNIPROTKB|O15083 ERC2 "ERC protein 2" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 35/55 (63%), Positives = 45/55 (81%)

Query:    28 LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGLK 82
             L  E++   +E+ +LR T++E+ELRIETQKQTL ARDESIKKLLEMLQ+KG+  K
Sbjct:   266 LQAEHDRQAKELFLLRKTLEEMELRIETQKQTLNARDESIKKLLEMLQSKGLPSK 320

GO:0030054 "cell junction" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0030426 "growth cone" evidence=ISS

GO:0042734 "presynaptic membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q811U3	RB6I2_RAT	No assigned EC number	0.6545	0.6707	0.0580	yes	N/A
Q8IUD2	RB6I2_HUMAN	No assigned EC number	0.6545	0.6707	0.0492	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	82
pfam10174	774	pfam10174, Cast, RIM-binding protein of the cytoma	2e-04

>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 31/61 (50%), Positives = 43/61 (70%)

Query: 22  QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKGVGL 81
           + Q   +  E E    E+ +LRDT+++L+LR+E  +QTL ARDE IKKLLEMLQ+KG+  
Sbjct: 113 EGQFSRIQAERERQAMELFLLRDTLEKLQLRMERLQQTLDARDEEIKKLLEMLQSKGLSA 172

Query: 82  K 82
           K
Sbjct: 173 K 173

This is a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion. The C-terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). The family also contains four coiled-coil domains. Length = 774

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	82
KOG4809|consensus	654		99.89
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	99.58
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	92.11
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	91.03
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.6
PF11598	45	COMP: Cartilage oligomeric matrix protein; InterPr	89.51
PF08657	259	DASH_Spc34: DASH complex subunit Spc34 ; InterPro:	89.47
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	89.47
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.98
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	88.72
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	87.91
PF10883	87	DUF2681: Protein of unknown function (DUF2681); In	87.75
PF10186	302	Atg14: UV radiation resistance protein and autopha	87.41
PRK11637	428	AmiB activator; Provisional	86.55
PRK10803	263	tol-pal system protein YbgF; Provisional	86.47
PF10186	302	Atg14: UV radiation resistance protein and autopha	85.71
PF08581	79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	85.7
KOG4196|consensus	135		84.9
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	84.82
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	84.76
PF10146	230	zf-C4H2: Zinc finger-containing protein ; InterPro	84.43
PRK10884	206	SH3 domain-containing protein; Provisional	84.03
PRK14127	109	cell division protein GpsB; Provisional	83.2
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	82.92
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.16
KOG2391|consensus	365		81.97
PRK00888	105	ftsB cell division protein FtsB; Reviewed	81.72
PF08700	87	Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT te	81.22
PF10018	188	Med4: Vitamin-D-receptor interacting Mediator subu	80.53

>KOG4809|consensus

Probab=99.89  E-value=1.4e-23  Score=176.02  Aligned_cols=82  Identities=51%  Similarity=0.544  Sum_probs=79.4

Q ss_pred             ChHHHHHHHHH-HHhcCCCHHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy2820           1 MLVRQLEEELR-MRLRGPNLEMQNQIEV--------LYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLL   71 (82)
Q Consensus         1 mlvrqleeelr-~rmR~P~~E~q~q~e~--------l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLL   71 (82)
                      |.+|+|..||| .|+|+|+.++..+...        +++|++++.+|+|+||+|++++|+|||||||||.||||||||||
T Consensus       198 m~argl~~ELR~qr~rnq~Le~~ssS~~g~~~~~~~~~ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLl  277 (654)
T KOG4809|consen  198 MNARGLSAELRNQRARNQPLEINSSSAKGLGYTCLGRLAELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLL  277 (654)
T ss_pred             HHHHHHHHHHHHHHhhcchhhhhhhcccCCCchHHHHHHHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHH
Confidence            67999999999 7889999999999998        99999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCCC
Q psy2820          72 EMLQNKGVGLK   82 (82)
Q Consensus        72 EmLq~KG~~~k   82 (82)
                      ||||+||||++
T Consensus       278 EmLq~kgmg~~  288 (654)
T KOG4809|consen  278 EMLQRKGMGRS  288 (654)
T ss_pred             HHHHHhhcccc
Confidence            99999999974

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=99.58  E-value=7.6e-15  Score=124.08  Aligned_cols=80  Identities=53%  Similarity=0.716  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHH-----HhcCC----C--------HHH-HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2820           2 LVRQLEEELRM-----RLRGP----N--------LEM-QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQAR   63 (82)
Q Consensus         2 lvrqleeelr~-----rmR~P----~--------~E~-q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aR   63 (82)
                      -|.+|.+|||.     |+.++    +        .+. +.++.+|++|+|++++|+++||+|+++++.+|++|+|||.++
T Consensus        75 ei~~LqeELr~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~~q~~l~~~  154 (775)
T PF10174_consen   75 EIQALQEELRAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIETQQQTLDKA  154 (775)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47889999977     55443    1        122 568999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCC
Q psy2820          64 DESIKKLLEMLQNKGVGL   81 (82)
Q Consensus        64 DESIkKLLEmLq~KG~~~   81 (82)
                      |+||+||++||++||+|+
T Consensus       155 ~eei~kL~e~L~~~g~~~  172 (775)
T PF10174_consen  155 DEEIEKLQEMLQSKGLSA  172 (775)
T ss_pred             HHHHHHHHHHHhhcCCcc
Confidence            999999999999999986

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.11  E-value=1.5  Score=34.33  Aligned_cols=58  Identities=31%  Similarity=0.446  Sum_probs=39.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2820          21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKG   78 (82)
Q Consensus        21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG   78 (82)
                      ++.|++.+++..+.+..|+.-+..-|++++-.|+.=+..+..|++++++=+..+|.-|
T Consensus        57 L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq~nG  114 (265)
T COG3883          57 LDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQVNG  114 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4566666666666666666666666777777777777777777777777666666655

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=91.03  E-value=3.5  Score=35.48  Aligned_cols=37  Identities=32%  Similarity=0.499  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHH---hcCCCHHHHHHHHHHhhhHHHHHHHH
Q psy2820           3 VRQLEEELRMR---LRGPNLEMQNQIEVLYTENEHLTREI   39 (82)
Q Consensus         3 vrqleeelr~r---mR~P~~E~q~q~e~l~~e~er~~rE~   39 (82)
                      .||+|+|||..   .-+....+..++..++.|||.+...+
T Consensus       437 ~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl  476 (697)
T PF09726_consen  437 SRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKL  476 (697)
T ss_pred             hhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence            48999999998   46666777777777777777766554

; GO: 0016021 integral to membrane

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.60  E-value=5.2  Score=27.63  Aligned_cols=59  Identities=31%  Similarity=0.469  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHhhHH
Q psy2820           3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGI-----------------LRDTIKELELRIETQKQTLQARDE   65 (82)
Q Consensus         3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~l-----------------Lr~T~eElE~RietQkQTL~aRDE   65 (82)
                      +|++|-|+        .-++.++.+|.++.+.+..||.-                 |+.-+++++.|.++=-+.++-++|
T Consensus        25 lr~~E~E~--------~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E   96 (120)
T PF12325_consen   25 LRRLEGEL--------ASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSE   96 (120)
T ss_pred             HHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence            45555554        33566666666666666666544                 444555555555555555555555


Q ss_pred             HHHH
Q psy2820          66 SIKK   69 (82)
Q Consensus        66 SIkK   69 (82)
                      -+..
T Consensus        97 ~veE  100 (120)
T PF12325_consen   97 EVEE  100 (120)
T ss_pred             HHHH
Confidence            5443

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF11598 COMP: Cartilage oligomeric matrix protein; InterPro: IPR024665 Thrombospondins are adhesive glycoproteins that mediate cell-to-cell and cell-to-matrix interactions

Probab=89.51  E-value=0.9  Score=27.38  Aligned_cols=29  Identities=28%  Similarity=0.347  Sum_probs=24.2

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q psy2820          20 EMQNQIEVLYTENEHLTREIGILRDTIKE   48 (82)
Q Consensus        20 E~q~q~e~l~~e~er~~rE~~lLr~T~eE   48 (82)
                      ++-+-+..+..+..++.+|+..||.||.|
T Consensus        12 ~l~~~l~elk~~l~~Q~kE~~~LRntI~e   40 (45)
T PF11598_consen   12 ELNQMLQELKELLRQQIKETRFLRNTIME   40 (45)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556677888889999999999999986

Cartilage oligomeric matrix protein may play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as collagen and fibronectin [, ]. Thrombospondin 3 and 4 and cartilage oligomeric matrix proteins contain a five-stranded coiled-coil domain represented by this entry. This domain has a binding site between two internal rings formed by Leu37 and Thr40 [].; PDB: 1MZ9_D 1FBM_A 1VDF_E.

>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []

Probab=89.47  E-value=3.2  Score=31.74  Aligned_cols=57  Identities=19%  Similarity=0.238  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820           3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA   62 (82)
Q Consensus         3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~a   62 (82)
                      ++.+|+=+.   -.|.++.+..+..|...+.++..++.-|+..|.+-+.+++.+......
T Consensus       163 L~~ae~L~~---vYP~~ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~  219 (259)
T PF08657_consen  163 LRGAEKLCN---VYPLPGAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSD  219 (259)
T ss_pred             HHHHHHHHH---hCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence            444444333   379999999999999999998888877777777777777776554433

In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=89.47  E-value=2.1  Score=25.35  Aligned_cols=34  Identities=32%  Similarity=0.525  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820          19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELR   52 (82)
Q Consensus        19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R   52 (82)
                      -+|+..++.|.++|+.+..++..|.+.+..|...
T Consensus        29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e   62 (64)
T PF00170_consen   29 EELEEKVEELESENEELKKELEQLKKEIQSLKSE   62 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4566777777777777777777777776666543

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.98  E-value=5.7  Score=28.74  Aligned_cols=45  Identities=29%  Similarity=0.383  Sum_probs=23.2

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Q psy2820          23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESI   67 (82)
Q Consensus        23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESI   67 (82)
                      .+-..|.+|.+.+.+|+.-|+.-.+.++..+++|.+.+.+=...|
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi   93 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQI   93 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444455555555555555555555555555555554444333

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=88.72  E-value=3  Score=26.21  Aligned_cols=33  Identities=12%  Similarity=0.321  Sum_probs=22.6

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820          20 EMQNQIEVLYTENEHLTREIGILRDTIKELELR   52 (82)
Q Consensus        20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R   52 (82)
                      |+.+.+.++.+..+-+.+|+.-+++++++++..
T Consensus         4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~en   36 (55)
T PF05377_consen    4 ELENELPRIESSINTVKKENEEISESVEKIEEN   36 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666677777777777777777777777543

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.91  E-value=3.6  Score=32.25  Aligned_cols=51  Identities=27%  Similarity=0.364  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy2820          18 NLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIK   68 (82)
Q Consensus        18 ~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIk   68 (82)
                      --+++.+++.+..+++....|+..|.+-|++++.+|..+...|..|--++.
T Consensus        61 i~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~~~l~~raRAmq  111 (265)
T COG3883          61 IEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQELLKKRARAMQ  111 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            347899999999999999999999999999999999999999999987765

>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function

Probab=87.75  E-value=4  Score=27.34  Aligned_cols=55  Identities=29%  Similarity=0.390  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC
Q psy2820          21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNKG   78 (82)
Q Consensus        21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~KG   78 (82)
                      .+.+.+.|++|++.+..|...-..-++.-+.|   ||-.=.+|.-|=..+.+-||+.|
T Consensus        28 a~~~~~kL~~en~qlk~Ek~~~~~qvkn~~vr---qknee~~~~~sr~~V~d~L~q~g   82 (87)
T PF10883_consen   28 AKKQNAKLQKENEQLKTEKAVAETQVKNAKVR---QKNEENTRRLSRDSVIDQLQQHG   82 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhHHhhccCCHHHHHHHHHHcC
Confidence            45568899999999999998888877776654   77777777777788889999988

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=87.41  E-value=7.9  Score=27.05  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy2820          33 EHLTREIGILRDTIKELELRIET   55 (82)
Q Consensus        33 er~~rE~~lLr~T~eElE~Riet   55 (82)
                      +.+.+++.-.|+.+.++...+++
T Consensus        80 ~~~~~~i~~~r~~l~~~~~~l~~  102 (302)
T PF10186_consen   80 ERLRKRIEQKRERLEELRESLEQ  102 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK11637 AmiB activator; Provisional

Probab=86.55  E-value=8.5  Score=29.81  Aligned_cols=54  Identities=17%  Similarity=0.175  Sum_probs=26.1

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820          23 NQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN   76 (82)
Q Consensus        23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~   76 (82)
                      .++..+..+.+....++.-+...+..++.+|...+..+..+.+.+++++..+..
T Consensus        82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y~  135 (428)
T PRK11637         82 EAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAFR  135 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333334444444444444445555555555555555555555555555544433

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=86.47  E-value=3.8  Score=30.55  Aligned_cols=34  Identities=15%  Similarity=0.161  Sum_probs=20.0

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Q psy2820          19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELR   52 (82)
Q Consensus        19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~R   52 (82)
                      .+|++|++.|+.|..++.-.+.-+.--|+.|..|
T Consensus        57 ~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~r   90 (263)
T PRK10803         57 TQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVER   90 (263)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            5788888877766665555544444444444433

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=85.71  E-value=9.9  Score=26.55  Aligned_cols=34  Identities=29%  Similarity=0.427  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Q psy2820          32 NEHLTREIGILRDTIKELELRIETQKQTLQARDE   65 (82)
Q Consensus        32 ~er~~rE~~lLr~T~eElE~RietQkQTL~aRDE   65 (82)
                      ...+..++.-+++.++....+++..++.+..|..
T Consensus        72 ~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~  105 (302)
T PF10186_consen   72 LERLRERIERLRKRIEQKRERLEELRESLEQRRS  105 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333333333344444444444444443

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []

Probab=85.70  E-value=7.6  Score=25.24  Aligned_cols=36  Identities=25%  Similarity=0.392  Sum_probs=18.7

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820          25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTL   60 (82)
Q Consensus        25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL   60 (82)
                      ++.+.+|.+.+++|....+..=+++|..|.+|-|-+
T Consensus         6 Ld~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em   41 (79)
T PF08581_consen    6 LDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEM   41 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            455555666555555555444445555544444443

; PDB: 3VP9_B 3VP8_B.

>KOG4196|consensus

Probab=84.90  E-value=2  Score=31.41  Aligned_cols=34  Identities=32%  Similarity=0.494  Sum_probs=25.1

Q ss_pred             CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820          17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKELE   50 (82)
Q Consensus        17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE   50 (82)
                      -+.+++||++.|..|+.++.+|+..++.-.+-+-
T Consensus        82 ~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   82 EKAELQQQVEKLKEENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788888888888888888877776665543

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=84.82  E-value=13  Score=27.00  Aligned_cols=55  Identities=25%  Similarity=0.377  Sum_probs=35.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820          21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ   75 (82)
Q Consensus        21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq   75 (82)
                      +..+++.|...++++.+.+.-.++.+.+++.+|++=..|...=.+.+.+.++-|+
T Consensus        61 l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~  115 (251)
T PF11932_consen   61 LEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELE  115 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566666777777777777777777777777776666555555555555555444

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=84.76  E-value=2.6  Score=28.56  Aligned_cols=33  Identities=36%  Similarity=0.477  Sum_probs=29.7

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820          19 LEMQNQIEVLYTENEHLTREIGILRDTIKELEL   51 (82)
Q Consensus        19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~   51 (82)
                      .++.+++..|..||.++..|+.-||+.+.+++.
T Consensus        25 ~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen   25 EELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            467888999999999999999999999999876

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=84.43  E-value=12  Score=28.24  Aligned_cols=54  Identities=26%  Similarity=0.354  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy2820          20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEM   73 (82)
Q Consensus        20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEm   73 (82)
                      |..++++.|..|......||-..-.-+..||.-|..-+..-..+.+.|.++.+-
T Consensus        36 e~~kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~ee   89 (230)
T PF10146_consen   36 EYRKEMEELLQERMAHVEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEE   89 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999988888888888888887753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=84.03  E-value=6  Score=29.23  Aligned_cols=35  Identities=20%  Similarity=0.409  Sum_probs=21.9

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820          25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQT   59 (82)
Q Consensus        25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQT   59 (82)
                      +..|.+||+.+..|+..++..++.++..+++++.+
T Consensus       134 ~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~  168 (206)
T PRK10884        134 INGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT  168 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33466666666666666666666666666665544

>PRK14127 cell division protein GpsB; Provisional

Probab=83.20  E-value=4.1  Score=28.02  Aligned_cols=35  Identities=23%  Similarity=0.327  Sum_probs=26.3

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820          21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIET   55 (82)
Q Consensus        21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Riet   55 (82)
                      +-+.++.++.|+.++..|+.-|+..+.+++.++..
T Consensus        35 V~~dye~l~~e~~~Lk~e~~~l~~~l~e~~~~~~~   69 (109)
T PRK14127         35 VIKDYEAFQKEIEELQQENARLKAQVDELTKQVSV   69 (109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            44566777788888888888888888888777663

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=82.92  E-value=3.6  Score=25.88  Aligned_cols=44  Identities=27%  Similarity=0.526  Sum_probs=27.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820           6 LEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELE   50 (82)
Q Consensus         6 leeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE   50 (82)
                      +.+||+ +++.-|+.....+..-..-|.-+..||.-|++-++|+-
T Consensus        16 ~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen   16 IQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            344554 45666666666666666666667777777766666653

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=82.16  E-value=17  Score=27.63  Aligned_cols=59  Identities=20%  Similarity=0.259  Sum_probs=36.4

Q ss_pred             CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy2820          16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEML   74 (82)
Q Consensus        16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmL   74 (82)
                      .|+..-+.+++.+.++...+..++.-.++.+.+++.+++.=.+.+.+-.+.+.++++.+
T Consensus       202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI  260 (325)
T PF08317_consen  202 EIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEI  260 (325)
T ss_pred             hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555566777777777777777777777776666666555555555555544444443

>KOG2391|consensus

Probab=81.97  E-value=22  Score=29.52  Aligned_cols=67  Identities=22%  Similarity=0.280  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHH---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820           4 RQLEEELRMRLRGPNLEMQNQIEVL---YTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK   77 (82)
Q Consensus         4 rqleeelr~rmR~P~~E~q~q~e~l---~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K   77 (82)
                      --.++-+|-|++       ..|+.+   +++..|...|+.+-..-|++++.++|.|.+.|++--+-.++-.++-++|
T Consensus       213 sa~~eklR~r~e-------eeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~eal~~  282 (365)
T KOG2391|consen  213 SAVREKLRRRRE-------EEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVREALEK  282 (365)
T ss_pred             HHHHHHHHHHHH-------HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            344566666653       344444   4455566667888888888899999999998887766666666664443

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=81.72  E-value=7.6  Score=25.78  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820          19 LEMQNQIEVLYTENEHLTREIGILRDTIKELE   50 (82)
Q Consensus        19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE   50 (82)
                      .+++++++.++.+++.+..++.-|+.-++.|.
T Consensus        30 ~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~   61 (105)
T PRK00888         30 WRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK   61 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45666666666666666666666666555554

>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi

Probab=81.22  E-value=9.4  Score=22.87  Aligned_cols=59  Identities=24%  Similarity=0.379  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820           3 VRQLEEELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQ   61 (82)
Q Consensus         3 vrqleeelr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~   61 (82)
                      +++++..|+-.++.-+-++|..|-.=|.+-=..++||.-++..+.++...+.+..+.+.
T Consensus        24 i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l~~~l~~l~~~~~   82 (87)
T PF08700_consen   24 IRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSELRNLLSELQQSIQ   82 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46777888888888888888888888888888888888888888777777776665544

Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].

>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=80.53  E-value=16  Score=25.75  Aligned_cols=50  Identities=24%  Similarity=0.401  Sum_probs=25.5

Q ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820          25 IEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ   75 (82)
Q Consensus        25 ~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq   75 (82)
                      ++.|.+=.+.+..-|..| ..-.+...+|..-++...++|+.|+.++.-|.
T Consensus         4 ~~~L~~~d~~L~~~L~~l-~~hq~~~~~I~~L~~e~~~ld~~i~~~~~~L~   53 (188)
T PF10018_consen    4 AEDLIEADDELSSALEEL-QEHQENQARIQQLRAEIEELDEQIRDILKQLK   53 (188)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444 23344455666666666666666666655553

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	82
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.3 bits (88), Expect = 6e-05
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 40/111 (36%)

Query: 6   LEEELRMRLRGPNLEMQN---QIEVLYTENE-----HLTRE--IGILRDTIKEL--ELRI 53
           L   ++   R P++  +    Q + LY +N+     +++R      LR  + EL     +
Sbjct: 94  LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153

Query: 54  ETQ------KQTLQA---RDESIKK-------------------LLEMLQN 76
                    K  +         ++                    +LEMLQ 
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	82
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	93.33
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	91.37
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	90.98
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	90.77
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	89.3
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	88.78
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	88.06
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	87.68
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	85.43
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	84.75
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	83.63
3trt_A	77	Vimentin; cytoskeleton, intermediate filament, alp	83.3
2ve7_A	315	Kinetochore protein HEC1, kinetochore protein SPC;	82.64
3tnu_A	131	Keratin, type I cytoskeletal 14; coiled-coil, stru	82.21
3tnu_B	129	Keratin, type II cytoskeletal 5; coiled-coil, stru	81.75
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	80.92
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	80.83
2kj1_A	89	BM2 protein; cytoplasmic domain, coiled coil, tran	80.64

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=93.33  E-value=0.52  Score=29.82  Aligned_cols=52  Identities=25%  Similarity=0.397  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820          19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK   77 (82)
Q Consensus        19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K   77 (82)
                      +++.+.++.+..+|..       |.++|..+|.+++.=+..=..+...+|++++-|-.|
T Consensus         3 ~~~~~kLq~~E~~N~~-------Le~~v~~le~~Le~s~~~q~~~~~Elk~~~e~Ld~K   54 (72)
T 3cve_A            3 HNSHMKLQEVEIRNKD-------LEGQLSEMEQRLEKSQSEQDAFRSNLKTLLEILDGK   54 (72)
T ss_dssp             CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            5677888888877765       677888888888887777778888999999988765

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=91.37  E-value=1.4  Score=27.21  Aligned_cols=47  Identities=28%  Similarity=0.432  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820          20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK   77 (82)
Q Consensus        20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K   77 (82)
                      -+-+|++.|..||-|+.||+.-=..-+..||..           --..|.++.+||++
T Consensus         7 QL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~e-----------ts~mKevlk~lq~~   53 (54)
T 1deb_A            7 QLLKQVEALKMENSNLRQELEDNSNHLTKLETE-----------ASNMKEVLKQLQGS   53 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhh-----------hhhHHHHHHHHccc
Confidence            356899999999999999998777767666643           23467888888875

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=90.98  E-value=0.47  Score=27.94  Aligned_cols=32  Identities=19%  Similarity=0.302  Sum_probs=28.5

Q ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820          23 NQIEVLYTENEHLTREIGILRDTIKELELRIE   54 (82)
Q Consensus        23 ~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie   54 (82)
                      ..+++|..|++.+..++.-|.++++|+..+++
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~   50 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA   50 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            57899999999999999999999999988765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=90.77  E-value=1.2  Score=32.96  Aligned_cols=55  Identities=15%  Similarity=0.184  Sum_probs=36.1

Q ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Q psy2820          22 QNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQN   76 (82)
Q Consensus        22 q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~   76 (82)
                      +++++....+.+.+.+|+.-+++-++++..++...+|....=+..||.|.+-++.
T Consensus       529 ~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~  583 (597)
T 3oja_B          529 RTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR  583 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            3444444555555556666666666666667777777777888888888876653

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=89.30  E-value=0.76  Score=27.06  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=26.1

Q ss_pred             CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Q psy2820          16 GPNLEMQNQIEVLYTENEHLTREIGILRDTIKELEL   51 (82)
Q Consensus        16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~   51 (82)
                      ....+++++++.|.++|..+..|+..|+..+..|..
T Consensus        23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~   58 (63)
T 2wt7_A           23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEKLEF   58 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677888888888888888888777776665543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=88.78  E-value=3.4  Score=26.65  Aligned_cols=55  Identities=25%  Similarity=0.331  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820          21 MQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ   75 (82)
Q Consensus        21 ~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq   75 (82)
                      +|-.++.|..+|..+..|+.-++..-+.+...++.=++-..+-++.|..||.-+.
T Consensus        25 LqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~e   79 (81)
T 2jee_A           25 LQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRME   79 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            4567778888888888888888888888999999999999999999999987543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=88.06  E-value=1.7  Score=25.16  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=23.1

Q ss_pred             CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Q psy2820          17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKELE   50 (82)
Q Consensus        17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE   50 (82)
                      -..+++..++.|.++|..+..++..|+..+..|.
T Consensus        23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk   56 (61)
T 1t2k_D           23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677777777777777777777776665554

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=87.68  E-value=2.2  Score=27.30  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Q psy2820          19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQNK   77 (82)
Q Consensus        19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq~K   77 (82)
                      .++.+.++.+..+|..       |.++|..+|.+++.=++.=..+...++++++-|-.|
T Consensus         9 e~~~~klq~~E~rN~~-------Le~~v~~le~~Le~s~~~q~~~~~Elk~l~e~Ld~K   60 (79)
T 3cvf_A            9 EETQQKVQDLETRNAE-------LEHQLRAMERSLEEARAERERARAEVGRAAQLLDVS   60 (79)
T ss_dssp             -CTTHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            4556667777666654       778888888888887777778888999999988765

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=85.43  E-value=4.4  Score=25.58  Aligned_cols=33  Identities=21%  Similarity=0.266  Sum_probs=19.6

Q ss_pred             CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820          17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQ   56 (82)
Q Consensus        17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQ   56 (82)
                      ...+|++|++.|+.|       |.-||-.+|++...|+.-
T Consensus        21 ~~~~Lq~Ql~~Lq~E-------v~~LRGqiE~~~~~l~ql   53 (83)
T 2xdj_A           21 LLTQLQQQLSDNQSD-------IDSLRGQIQENQYQLNQV   53 (83)
T ss_dssp             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHH
Confidence            346677777766655       455556666665555543

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=84.75  E-value=1.3  Score=25.84  Aligned_cols=33  Identities=18%  Similarity=0.420  Sum_probs=24.2

Q ss_pred             CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Q psy2820          17 PNLEMQNQIEVLYTENEHLTREIGILRDTIKEL   49 (82)
Q Consensus        17 P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eEl   49 (82)
                      -..+++..++.|.++|+.+..++..|+..+..|
T Consensus        23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~L   55 (62)
T 1jnm_A           23 RIARLEEKVKTLKAQNSELASTANMLREQVAQL   55 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888888888888887777766544

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=83.63  E-value=0.72  Score=27.62  Aligned_cols=31  Identities=23%  Similarity=0.434  Sum_probs=22.6

Q ss_pred             CCCHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Q psy2820          16 GPNLEMQNQIEVLYTENEHLTREIGILRDTI   46 (82)
Q Consensus        16 ~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~   46 (82)
                      ....+++.+++.|.+||..+..|+.-|+..+
T Consensus        30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           30 QRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445778888888888888888887777654

>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*

Probab=83.30  E-value=5.1  Score=23.50  Aligned_cols=18  Identities=17%  Similarity=0.385  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy2820          38 EIGILRDTIKELELRIET   55 (82)
Q Consensus        38 E~~lLr~T~eElE~Riet   55 (82)
                      |+.-||.+|..|+..|++
T Consensus        57 Ei~elrr~iq~L~~el~s   74 (77)
T 3trt_A           57 ESTEYRRQVQSLTMEVDA   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            334444444444444443

>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*

Probab=82.64  E-value=6.4  Score=28.99  Aligned_cols=46  Identities=20%  Similarity=0.215  Sum_probs=33.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Q psy2820          30 TENEHLTREIGILRDTIKELELRIETQKQTLQARDESIKKLLEMLQ   75 (82)
Q Consensus        30 ~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIkKLLEmLq   75 (82)
                      +|.+.+..++.-|++-++++|..+++.+.....|-+.++|-+++.+
T Consensus       185 ~eie~L~~~~~~L~eEi~~Le~~~e~~~k~n~~rl~~Lqk~~~~~~  230 (315)
T 2ve7_A          185 FKLESLEAKNRALNEQIARLEQERSTANKANAERLKRLQKSADLYK  230 (315)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence            4666667777777777777788888888777777777777666654

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=82.21  E-value=8  Score=25.04  Aligned_cols=49  Identities=16%  Similarity=0.125  Sum_probs=38.9

Q ss_pred             cCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2820          15 RGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQAR   63 (82)
Q Consensus        15 R~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aR   63 (82)
                      +.--.|+..++..|.+|.+.+..-..-|..+|.++|.+-+.+...+++.
T Consensus        37 k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~   85 (131)
T 3tnu_A           37 KSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEM   85 (131)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3345688899999999999999888999999999999988887665544

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}

Probab=81.75  E-value=8.2  Score=24.85  Aligned_cols=46  Identities=22%  Similarity=0.260  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q psy2820          19 LEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARD   64 (82)
Q Consensus        19 ~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRD   64 (82)
                      .|+..++..|.+|.+.+..-..-|..+|.++|.+-+.+...+++.=
T Consensus        39 ~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i   84 (129)
T 3tnu_B           39 SEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKL   84 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5778889999999999988889999999999999888776665543

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=80.92  E-value=6.1  Score=26.56  Aligned_cols=49  Identities=18%  Similarity=0.304  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Q psy2820          20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQARDESIK   68 (82)
Q Consensus        20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~aRDESIk   68 (82)
                      |+...+-.++.|+....||+..+..+...+...+..=+..|..||+-|.
T Consensus        41 e~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~   89 (103)
T 4h22_A           41 ELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE   89 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777777788888888888888888888888777778888887554

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=80.83  E-value=3.4  Score=25.48  Aligned_cols=35  Identities=23%  Similarity=0.313  Sum_probs=26.9

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy2820          20 EMQNQIEVLYTENEHLTREIGILRDTIKELELRIE   54 (82)
Q Consensus        20 E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~Rie   54 (82)
                      ++..++..|..+++.+..|+..|+..+..|...++
T Consensus        33 ~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~   67 (70)
T 1gd2_E           33 ALETQVVTLKELHSSTTLENDQLRQKVRQLEEELR   67 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56677778888888888888888888887766554

>2kj1_A BM2 protein; cytoplasmic domain, coiled coil, transport protein; NMR {Influenza b virus}

Probab=80.64  E-value=5.1  Score=26.60  Aligned_cols=41  Identities=34%  Similarity=0.600  Sum_probs=19.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2820           9 ELRMRLRGPNLEMQNQIEVLYTENEHLTREIGILRDTIKELELRIETQKQTLQA   62 (82)
Q Consensus         9 elr~rmR~P~~E~q~q~e~l~~e~er~~rE~~lLr~T~eElE~RietQkQTL~a   62 (82)
                      .|.+|+|+||-|-             ..||++|||-....-=.--||-|.+|..
T Consensus        11 ~lki~ir~pnke~-------------inrevsilrh~yqkeiqaketmk~~ls~   51 (89)
T 2kj1_A           11 NMKIRIKGPNKET-------------INREVSILRHSYQKEIQAKETMKEVLSD   51 (89)
T ss_dssp             -------CCCHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEecCCCHHH-------------HhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3678999999764             4578888886543211223445555543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00