Psyllid ID: psy2836

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-----
MRVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNMMYSSYSKAFSGT
ccccccccccccccccccccEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccccccccccEEEEEEEccEEEEEEcccEEcccccccEEEEEEcccEEEEEEEEccccccccccccccHHHcccc
ccEEEccccHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHccccHHHHccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEEEccEEEccccccEEEEEEEEcccEEEEEccccHHHHHHHHHHHHHHHcccc
mrvfplhstrlfpktanvdplqfsfrvkfyppdpfklkedITRYQIYLQLKRDLLhgrlycdpnaaAQLGAYILQEelgdfnpeehvgnYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAAcldtygvdpqpvkdhagnqiyLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVfhedprtknmmyssyskafsgt
mrvfplhstrlfpktanvdplqfsfrVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHedprtknmmyssyskafsgt
MRVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNMMYSSYSKAFSGT
********TRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEK*******QVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHE*******************
MRVFPL*STRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNMMYSSYSKAFSGT
MRVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNMMYSSYSKAFSGT
*RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNMMYSSYSKAFS**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRTKNMMYSSYSKAFSGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query215 2.2.26 [Sep-21-2011]
Q0P4Q4 600 FERM domain-containing pr yes N/A 0.883 0.316 0.430 2e-41
Q8BHD4 595 FERM domain-containing pr yes N/A 0.837 0.302 0.453 2e-41
Q6P5H6 517 FERM domain-containing pr no N/A 0.837 0.348 0.447 6e-41
Q7Z6J6 570 FERM domain-containing pr yes N/A 0.837 0.315 0.441 5e-40
A2A2Y4 597 FERM domain-containing pr no N/A 0.837 0.301 0.453 9e-39
Q5R803 597 FERM domain-containing pr no N/A 0.837 0.301 0.453 1e-38
Q9N179 617 Protein 4.1 OS=Bos taurus no N/A 0.869 0.303 0.422 2e-38
Q6Q7P4 810 Protein 4.1 OS=Canis fami no N/A 0.869 0.230 0.422 7e-38
P11171 864 Protein 4.1 OS=Homo sapie no N/A 0.869 0.216 0.422 1e-37
P48193 858 Protein 4.1 OS=Mus muscul no N/A 0.869 0.217 0.422 1e-37
>sp|Q0P4Q4|FRMD3_XENTR FERM domain-containing protein 3 OS=Xenopus tropicalis GN=frmd3 PE=2 SV=2 Back     alignment and function desciption
 Score =  169 bits (427), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/193 (43%), Positives = 118/193 (61%), Gaps = 3/193 (1%)

Query: 20  PLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELG 79
           P    FRVKFYP +P K+KE++TRY +YLQ+KRD+ HGRL C    AA LGA I+Q E+G
Sbjct: 101 PYTMCFRVKFYPHEPLKIKEELTRYLLYLQIKRDIFHGRLLCCFADAAFLGACIVQAEIG 160

Query: 80  DFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHE-KLKDQTPEQVETAFLRKAACLDTYG 138
           D++P+EH  NY+ D KI  KQ+  +E K++E H+ +L+ Q+P   E   L KA  L+TYG
Sbjct: 161 DYDPDEHPDNYICDFKIFPKQSQKLERKIVEIHKNELRGQSPSVSEFNLLLKAHSLETYG 220

Query: 139 VDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDP 198
           VDP P KD  G   +LG    G + F GN+R     W  +  + ++GK F  H+V  +  
Sbjct: 221 VDPHPCKDSTGTTTFLGYTAAGFVVFQGNKRIHLIKWPDICKMKFDGKTF--HVVVMQKE 278

Query: 199 RTKNMMYSSYSKA 211
           +   + Y + + A
Sbjct: 279 KKNILTYHTSTPA 291

Xenopus tropicalis (taxid: 8364)
>sp|Q8BHD4|FRMD3_MOUSE FERM domain-containing protein 3 OS=Mus musculus GN=Frmd3 PE=1 SV=1 Back     alignment and function description
>sp|Q6P5H6|FRMD5_MOUSE FERM domain-containing protein 5 OS=Mus musculus GN=Frmd5 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z6J6|FRMD5_HUMAN FERM domain-containing protein 5 OS=Homo sapiens GN=FRMD5 PE=1 SV=1 Back     alignment and function description
>sp|A2A2Y4|FRMD3_HUMAN FERM domain-containing protein 3 OS=Homo sapiens GN=FRMD3 PE=2 SV=1 Back     alignment and function description
>sp|Q5R803|FRMD3_PONAB FERM domain-containing protein 3 OS=Pongo abelii GN=FRMD3 PE=2 SV=1 Back     alignment and function description
>sp|Q9N179|41_BOVIN Protein 4.1 OS=Bos taurus GN=EPB41 PE=2 SV=1 Back     alignment and function description
>sp|Q6Q7P4|41_CANFA Protein 4.1 OS=Canis familiaris GN=EPB41 PE=2 SV=1 Back     alignment and function description
>sp|P11171|41_HUMAN Protein 4.1 OS=Homo sapiens GN=EPB41 PE=1 SV=4 Back     alignment and function description
>sp|P48193|41_MOUSE Protein 4.1 OS=Mus musculus GN=Epb41 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
328718846 515 PREDICTED: FERM domain-containing protei 0.851 0.355 0.679 1e-70
328718844 532 PREDICTED: FERM domain-containing protei 0.851 0.343 0.679 1e-70
270014529 568 hypothetical protein TcasGA2_TC004143 [T 0.869 0.329 0.654 8e-68
307196366 658 FERM domain-containing protein 5 [Harpeg 0.851 0.278 0.663 1e-66
241255103 575 FERM domain-containing protein, putative 0.888 0.332 0.619 2e-65
383849358 700 PREDICTED: FERM domain-containing protei 0.855 0.262 0.659 3e-65
340720402 689 PREDICTED: hypothetical protein LOC10064 0.851 0.265 0.641 1e-64
427785597 563 Putative rho guanine nucleotide exchange 0.874 0.333 0.619 2e-64
350410037 700 PREDICTED: FERM domain-containing protei 0.855 0.262 0.637 2e-64
328793290 595 PREDICTED: FERM domain-containing protei 0.855 0.309 0.643 2e-64
>gi|328718846|ref|XP_003246595.1| PREDICTED: FERM domain-containing protein 3-like isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  271 bits (694), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 125/184 (67%), Positives = 151/184 (82%), Gaps = 1/184 (0%)

Query: 18  VDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEE 77
            D + FSFRVKFYPP+PF+LKEDITRYQIYLQLKRDLLHGRLYC+ + AA LGAYILQ E
Sbjct: 85  ADNILFSFRVKFYPPNPFRLKEDITRYQIYLQLKRDLLHGRLYCNTSEAALLGAYILQAE 144

Query: 78  LGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHE-KLKDQTPEQVETAFLRKAACLDT 136
           LGDFNPEEH+ NYV +LKILLKQT  +EEKMM+ H+ +LK +T  ++ET FL+KA  LDT
Sbjct: 145 LGDFNPEEHIDNYVNELKILLKQTLQLEEKMMDIHKNELKGKTAAEMETIFLKKACILDT 204

Query: 137 YGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHE 196
           YGVDP  VKD  GNQ+YLGINHTGILTF G+++   + W QVQ IN+EGKMFI+H++ +E
Sbjct: 205 YGVDPHAVKDQRGNQLYLGINHTGILTFQGSKKMNHFSWSQVQKINFEGKMFIIHIILNE 264

Query: 197 DPRT 200
             +T
Sbjct: 265 KKQT 268

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|328718844|ref|XP_001943503.2| PREDICTED: FERM domain-containing protein 3-like isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|270014529|gb|EFA10977.1| hypothetical protein TcasGA2_TC004143 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307196366|gb|EFN77961.1| FERM domain-containing protein 5 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|241255103|ref|XP_002404142.1| FERM domain-containing protein, putative [Ixodes scapularis] gi|215496605|gb|EEC06245.1| FERM domain-containing protein, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|383849358|ref|XP_003700312.1| PREDICTED: FERM domain-containing protein 5-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|340720402|ref|XP_003398628.1| PREDICTED: hypothetical protein LOC100648757 [Bombus terrestris] Back     alignment and taxonomy information
>gi|427785597|gb|JAA58250.1| Putative rho guanine nucleotide exchange factor cdep [Rhipicephalus pulchellus] Back     alignment and taxonomy information
>gi|350410037|ref|XP_003488924.1| PREDICTED: FERM domain-containing protein 5-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|328793290|ref|XP_003251859.1| PREDICTED: FERM domain-containing protein 5-like [Apis mellifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query215
FB|FBgn0032225 572 CG5022 [Drosophila melanogaste 0.888 0.333 0.492 2.6e-47
ZFIN|ZDB-GENE-070523-1 603 frmd3 "FERM domain containing 0.795 0.283 0.488 1.1e-41
UNIPROTKB|A2A2Y4 597 FRMD3 "FERM domain-containing 0.837 0.301 0.453 1.6e-40
UNIPROTKB|F1P2F6 551 FRMD3 "Uncharacterized protein 0.837 0.326 0.458 2.6e-40
UNIPROTKB|F1MLE0 523 FRMD3 "Uncharacterized protein 0.795 0.326 0.470 2.6e-40
UNIPROTKB|F1S4G4 305 FRMD3 "Uncharacterized protein 0.772 0.544 0.485 2.6e-40
UNIPROTKB|F1PHQ5 541 FRMD3 "Uncharacterized protein 0.795 0.316 0.470 5.3e-40
MGI|MGI:2442466 595 Frmd3 "FERM domain containing 0.837 0.302 0.453 8.7e-40
ZFIN|ZDB-GENE-050419-226 540 si:ch211-69m14.1 "si:ch211-69m 0.837 0.333 0.447 4.8e-39
MGI|MGI:2442557 517 Frmd5 "FERM domain containing 0.837 0.348 0.447 6.1e-39
FB|FBgn0032225 CG5022 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 95/193 (49%), Positives = 130/193 (67%)

Query:     8 STRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAA 67
             S  +  +   +DPL FS RVKFYP DPF+L  +  R  +Y QLKRDL HGRLYC    AA
Sbjct:    71 SKSIIKQCKEMDPLLFSLRVKFYPADPFRLTGN-ARIMLYQQLKRDLRHGRLYCSLGEAA 129

Query:    68 QLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKD-QTPEQVETA 126
              LGA I+QEELGD+N + HVG+YV+ +++ L+QT  +E+K++E H+K +  Q        
Sbjct:   130 ALGALIVQEELGDYNEDVHVGSYVSSIELALRQTECLEKKIIELHKKREPGQNLSLAMDE 189

Query:   127 FLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGK 186
             FL  A  L+TYG+DP PVKDH G+Q Y+GIN+TGI TF+  +R+  + W ++  IN+EGK
Sbjct:   190 FLGIARGLETYGIDPHPVKDHRGSQQYVGINNTGISTFVAGKRSQHFRWNEIHKINFEGK 249

Query:   187 MFIVHLVFHEDPR 199
             MFI HL + +  R
Sbjct:   250 MFIAHLSYTDASR 262
GO:0008092 "cytoskeletal protein binding" evidence=IEA;ISS
GO:0005856 "cytoskeleton" evidence=IEA
GO:0019898 "extrinsic to membrane" evidence=IEA
GO:0005737 "cytoplasm" evidence=IEA
ZFIN|ZDB-GENE-070523-1 frmd3 "FERM domain containing 3" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|A2A2Y4 FRMD3 "FERM domain-containing protein 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1P2F6 FRMD3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MLE0 FRMD3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S4G4 FRMD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1PHQ5 FRMD3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:2442466 Frmd3 "FERM domain containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050419-226 si:ch211-69m14.1 "si:ch211-69m14.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:2442557 Frmd5 "FERM domain containing 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
smart00295201 smart00295, B41, Band 4 3e-32
cd13192105 cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containin 5e-32
pfam00373113 pfam00373, FERM_M, FERM central domain 4e-27
cd13184113 cd13184, FERM_C_4_1_family, Protein 4 4e-14
cd13186111 cd13186, FERM_C_NBL4_NBL5, Novel band 4 9e-13
pfam0938090 pfam09380, FERM_C, FERM C-terminal PH-like domain 4e-10
cd13189123 cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine 6e-10
cd13191115 cd13191, FERM_C_FRMD4A_FRMD4B, FERM domain-contain 4e-07
cd13193122 cd13193, FERM_C_FARP1-like, FERM, RhoGEF and pleck 6e-07
cd13188111 cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine ph 6e-07
cd13195131 cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligas 3e-05
cd13187124 cd13187, FERM_C_PTPH13, Protein tyrosine phosphata 3e-04
cd0083691 cd00836, FERM_C-lobe, FERM domain C-lobe 0.001
>gnl|CDD|214604 smart00295, B41, Band 4 Back     alignment and domain information 
 Score =  115 bits (290), Expect = 3e-32
 Identities = 55/148 (37%), Positives = 81/148 (54%), Gaps = 8/148 (5%)

Query: 1   MRVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRY-QIYLQLKRDLLHGRL 59
           +R +   +  L  +    +PL   FRVKFYPPDP +LKED TR   +YLQ++ D+L GRL
Sbjct: 52  LRHWLDPAKTLLDQDVKSEPLTLYFRVKFYPPDPNQLKEDPTRLNLLYLQVRNDILEGRL 111

Query: 60  YCDPNAAAQLGAYILQEELGDFNPEEH-VGNYVADLKILLKQT------TYIEEKMMEFH 112
            C    A  L A  LQ E GD++ E H +   ++  + L KQ           E+++E H
Sbjct: 112 PCPEEEALLLAALALQAEFGDYDEELHDLRGELSLKRFLPKQLLDSRKLKEWRERIVELH 171

Query: 113 EKLKDQTPEQVETAFLRKAACLDTYGVD 140
           ++L   +PE+ +  +L  A  L TYGV+
Sbjct: 172 KELIGLSPEEAKLKYLELARKLPTYGVE 199

1 homologues. Also known as ezrin/radixin/moesin (ERM) protein domains. Present in myosins, ezrin, radixin, moesin, protein tyrosine phosphatases. Plasma membrane-binding domain. These proteins play structural and regulatory roles in the assembly and stabilization of specialized plasmamembrane domains. Some PDZ domain containing proteins bind one or more of this family. Now includes JAKs. Length = 201
>gnl|CDD|241346 cd13192, FERM_C_FRMD3_FRMD5, FERM domain-containing protein 3 and 5 FERM (FRMD3 and 5) domain C-lobe Back     alignment and domain information
>gnl|CDD|215882 pfam00373, FERM_M, FERM central domain Back     alignment and domain information
>gnl|CDD|241338 cd13184, FERM_C_4_1_family, Protein 4 Back     alignment and domain information
>gnl|CDD|241340 cd13186, FERM_C_NBL4_NBL5, Novel band 4 Back     alignment and domain information
>gnl|CDD|220216 pfam09380, FERM_C, FERM C-terminal PH-like domain Back     alignment and domain information
>gnl|CDD|241343 cd13189, FERM_C_PTPN4_PTPN3_like, Protein tyrosine phosphatase non-receptor proteins 3 and 4 (PTPN4 and PTPN3) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241345 cd13191, FERM_C_FRMD4A_FRMD4B, FERM domain-containing protein 4A and 4B (FRMD4A and 4B) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241347 cd13193, FERM_C_FARP1-like, FERM, RhoGEF and pleckstrin domain-containing protein 1 and related proteins FERM domain Back     alignment and domain information
>gnl|CDD|241342 cd13188, FERM_C_PTPN14_PTPN21, Protein tyrosine phosphatase non-receptor proteins 14 and 21 (PTPN14 and 21) FERM domain Back     alignment and domain information
>gnl|CDD|241349 cd13195, FERM_C_MYLIP_IDOL, The E3 ubiquitin ligase myosin regulatory light chain-interacting protein (MYLIP; also called inducible degrader of the LDL receptor, IDOL) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241341 cd13187, FERM_C_PTPH13, Protein tyrosine phosphatase non-receptor 13 (PTPH13) FERM domain C-lobe Back     alignment and domain information
>gnl|CDD|241233 cd00836, FERM_C-lobe, FERM domain C-lobe Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 215
KOG3530|consensus 616 100.0
KOG3527|consensus 975 100.0
KOG0792|consensus 1144 100.0
KOG3529|consensus 596 99.98
smart00295207 B41 Band 4.1 homologues. Also known as ezrin/radix 99.95
PF00373126 FERM_M: FERM central domain; InterPro: IPR019748 T 99.94
KOG3531|consensus 1036 99.88
KOG4261|consensus 1003 99.87
KOG0248|consensus936 99.69
KOG4371|consensus 1332 99.64
cd0083692 FERM_C FERM_C domain. The FERM_C domain is the thi 99.61
PF0938090 FERM_C: FERM C-terminal PH-like domain; InterPro: 99.16
KOG3552|consensus 1298 99.05
KOG4371|consensus 1332 98.46
KOG3727|consensus664 98.37
KOG4257|consensus 974 98.35
cd0043585 ACBP Acyl CoA binding protein (ACBP) binds thiol e 98.18
KOG3531|consensus 1036 98.05
PF0088787 ACBP: Acyl CoA binding protein; InterPro: IPR00058 97.95
PF0937980 FERM_N: FERM N-terminal domain ; InterPro: IPR0189 97.77
PTZ0045890 acyl CoA binding protein; Provisional 97.42
KOG3784|consensus407 97.21
KOG4335|consensus558 96.87
COG428187 ACB Acyl-CoA-binding protein [Lipid metabolism] 96.59
KOG4335|consensus 558 96.06
KOG0817|consensus142 95.47
KOG3527|consensus 975 92.16
KOG3878|consensus 469 90.24
KOG3727|consensus 664 88.28
PF02174100 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 88.27
PF1431762 YcxB: YcxB-like protein 86.17
>KOG3530|consensus Back     alignment and domain information 
Probab=100.00  E-value=6.7e-53  Score=375.98  Aligned_cols=199  Identities=43%  Similarity=0.787  Sum_probs=195.0

Q ss_pred             CCCCCCCCccccccCCCCCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCC
Q psy2836           2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDF   81 (215)
Q Consensus         2 ~~wl~~~~~l~~q~~~~~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~   81 (215)
                      ++||||.|+|++|++..+|++|+||||||+.+|..|.++.||++||+|+|+|||+||++|+.+.|++||||++|+|+|||
T Consensus        63 ~hWLD~tK~I~kqvK~gppytL~~rVKfY~sdP~~Lree~tRYqfflQlKqDll~GRL~Cp~~~AaeLaAl~lQsELGDY  142 (616)
T KOG3530|consen   63 RHWLDPTKSIKKQVKIGPPYTLHLRVKFYPSDPNNLREENTRYQFFLQLKQDLLSGRLYCPFETAAELAALILQSELGDY  142 (616)
T ss_pred             ceecCcchhHHHHhccCCCeEEEEEEEeccCChhhhhchhhHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHhcCC
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEEEEeCCce
Q psy2836          82 NPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGI  161 (215)
Q Consensus        82 ~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGv~~~Gi  161 (215)
                      ++..|+.+|+++..++|.+++.+|.+|.+.|++++|+++++||..||+.|+.|++||+..|.|++++|++..||+++.||
T Consensus       143 n~~~Ht~~yVSefRf~p~Qte~LE~~I~e~hK~~rGqspaqAElnyLnkAkwLemYGVDmH~V~g~dg~ey~LGLTptGI  222 (616)
T KOG3530|consen  143 NEEEHTGGYVSEFRFLPNQTEELEERIFELHKELRGQSPAQAELNYLNKAKWLEMYGVDMHPVKGHDGSEYYLGLTPTGI  222 (616)
T ss_pred             ChhhccccceeeeEecccccHHHHHHHHHHHHHhcCCCHHHHHHHHHhhhhhhhhccccceeeecCCCceeEeeccCceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeeeeEEecccccceeeeCcEEEEEeeecCCCcc
Q psy2836         162 LTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDPRT  200 (215)
Q Consensus       162 ~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~~~~~~  200 (215)
                      .||+...++..|-|++|.++.|++++|++++.+++++..
T Consensus       223 lvf~g~~kig~f~WpkI~KvdFk~kk~~L~v~edd~~~~  261 (616)
T KOG3530|consen  223 LVFEGKKKIGLFFWPKITKVDFKGKKFTLVVSEDDDQGR  261 (616)
T ss_pred             EEEECCceeeEEecchheEeeccCcEEEEEEeeccccCC
Confidence            999999999999999999999999999999999877753

>KOG3527|consensus Back     alignment and domain information
>KOG0792|consensus Back     alignment and domain information
>KOG3529|consensus Back     alignment and domain information
>smart00295 B41 Band 4 Back     alignment and domain information
>PF00373 FERM_M: FERM central domain; InterPro: IPR019748 The FERM domain (F for 4 Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>KOG4261|consensus Back     alignment and domain information
>KOG0248|consensus Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>cd00836 FERM_C FERM_C domain Back     alignment and domain information
>PF09380 FERM_C: FERM C-terminal PH-like domain; InterPro: IPR018980 The FERM domain (F for 4 Back     alignment and domain information
>KOG3552|consensus Back     alignment and domain information
>KOG4371|consensus Back     alignment and domain information
>KOG3727|consensus Back     alignment and domain information
>KOG4257|consensus Back     alignment and domain information
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity Back     alignment and domain information
>KOG3531|consensus Back     alignment and domain information
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters [] Back     alignment and domain information
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain Back     alignment and domain information
>PTZ00458 acyl CoA binding protein; Provisional Back     alignment and domain information
>KOG3784|consensus Back     alignment and domain information
>KOG4335|consensus Back     alignment and domain information
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism] Back     alignment and domain information
>KOG4335|consensus Back     alignment and domain information
>KOG0817|consensus Back     alignment and domain information
>KOG3527|consensus Back     alignment and domain information
>KOG3878|consensus Back     alignment and domain information
>KOG3727|consensus Back     alignment and domain information
>PF02174 IRS: PTB domain (IRS-1 type); InterPro: IPR002404 Insulin receptor substrate-1 proteins contain both a pleckstrin homology domain IPR001849 from INTERPRO and a phosphotyrosine binding (PTB) domain Back     alignment and domain information
>PF14317 YcxB: YcxB-like protein Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
1gg3_A279 Crystal Structure Of The Protein 4.1r Membrane Bind 4e-39
3qij_A296 Primitive-Monoclinic Crystal Structure Of The Ferm 4e-39
3bin_A283 Structure Of The Dal-1 And Tslc1 (372-383) Complex 8e-35
2he7_A283 Ferm Domain Of Epb41l3 (Dal-1) Length = 283 8e-35
1sgh_A297 Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptid 4e-23
1e5w_A346 Structure Of Isolated Ferm Domain And First Long He 5e-23
1ef1_A294 Crystal Structure Of The Moesin Ferm DomainTAIL DOM 5e-23
1j19_A317 Crystal Structure Of The Radxin Ferm Domain Complex 2e-21
2emt_A322 Crystal Structure Analysis Of The Radixin Ferm Doma 3e-21
1ni2_A296 Structure Of The Active Ferm Domain Of Ezrin Length 3e-21
2d10_A312 Crystal Structure Of The Radixin Ferm Domain Comple 3e-21
2zpy_A312 Crystal Structure Of The Mouse Radxin Ferm Domain C 3e-21
2d2q_A310 Crystal Structure Of The Dimerized Radixin Ferm Dom 3e-21
1gc6_A297 Crystal Structure Of The Radixin Ferm Domain Comple 3e-21
2rq1_A109 Solution Structure Of The 4.1r Ferm Alpha Lobe Doma 5e-21
1h4r_A314 Crystal Structure Of The Ferm Domain Of Merlin, The 2e-19
1h4r_B314 Crystal Structure Of The Ferm Domain Of Merlin, The 2e-19
3u8z_A300 Human Merlin Ferm Domain Length = 300 2e-19
1isn_A323 Crystal Structure Of Merlin Ferm Domain Length = 32 4e-19
2i1j_A 575 Moesin From Spodoptera Frugiperda At 2.1 Angstroms 7e-17
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding Domain Length = 279 Back     alignment and structure 
Iteration: 1

 Score =  157 bits (397), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 79/187 (42%), Positives = 109/187 (58%)
Query: 6   LHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNA 65
           L S +   K     P  F+F VKFYPPDP +L EDITRY + LQL++D++ GRL C    
Sbjct: 56  LDSAKEIKKQVRGVPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFAT 115
Query: 66  AAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVET 125
            A LG+Y +Q ELGD++PE H  +YV+D K+   QT  +EEK+ME H+  +  TP Q + 
Sbjct: 116 LALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADL 175
Query: 126 AFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEG 185
            FL  A  L  YGVD    KD  G  I LG+  +G+L +    R  R+ W +V  I+Y+ 
Sbjct: 176 EFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKR 235
Query: 186 KMFIVHL 192
             F + +
Sbjct: 236 SSFFIKI 242
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm Domain Of Protein 4.1r Length = 296 Back     alignment and structure
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex Length = 283 Back     alignment and structure
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1) Length = 283 Back     alignment and structure
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide Length = 297 Back     alignment and structure
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix Of Moesin Length = 346 Back     alignment and structure
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN COMPLEX Length = 294 Back     alignment and structure
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed With The Icam-2 Cytoplasmic Peptide Length = 317 Back     alignment and structure
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain Complexed With Adhesion Molecule Psgl-1 Length = 322 Back     alignment and structure
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin Length = 296 Back     alignment and structure
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With The Nherf-1 C-Terminal Tail Peptide Length = 312 Back     alignment and structure
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain Complexed With The Mouse Cd44 Cytoplasmic Peptide Length = 312 Back     alignment and structure
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain Length = 310 Back     alignment and structure
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed With Inositol-(1,4,5)-Triphosphate Length = 297 Back     alignment and structure
>pdb|2RQ1|A Chain A, Solution Structure Of The 4.1r Ferm Alpha Lobe Domain Length = 109 Back     alignment and structure
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314 Back     alignment and structure
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The Neurofibromatosis 2 Tumor Suppressor Protein Length = 314 Back     alignment and structure
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain Length = 300 Back     alignment and structure
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain Length = 323 Back     alignment and structure
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms Resolution Length = 575 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query215
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 5e-62
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 8e-54
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 2e-52
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 1e-51
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 7e-49
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 2e-48
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 6e-45
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 9e-36
3au4_A555 Myosin-X; protein-protein complex, motor protein c 5e-20
4eku_A392 Protein-tyrosine kinase 2-beta; proline-rich tyros 3e-19
3pvl_A655 Myosin VIIA isoform 1; protein complex, novel fold 2e-17
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 7e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-05
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Length = 296 Back     alignment and structure
 Score =  194 bits (494), Expect = 5e-62
 Identities = 77/186 (41%), Positives = 110/186 (59%)

Query: 19  DPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEEL 78
            P  F+F VKFYPPDP +L EDITRY + LQL++D++ GRL C     A LG+Y +Q EL
Sbjct: 86  VPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSEL 145

Query: 79  GDFNPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYG 138
           GD++PE H  +YV+D K+   QT  +EEK+ME H+  +  TP Q +  FL  A  L  YG
Sbjct: 146 GDYDPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYG 205

Query: 139 VDPQPVKDHAGNQIYLGINHTGILTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHEDP 198
           VD    KD  G  I LG+  +G+L +    R  R+ W +V  I+Y+   F + +   E  
Sbjct: 206 VDLHKAKDLEGVDIILGVCSSGLLVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGEQE 265

Query: 199 RTKNMM 204
           + ++ +
Sbjct: 266 QYESTI 271
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Length = 371 Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Length = 314 Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Length = 575 Back     alignment and structure
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Length = 294 Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Length = 206 Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Length = 222 Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} Length = 322 Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Length = 555 Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Length = 392 Back     alignment and structure
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Length = 655 Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Length = 375 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
3qij_A296 Protein 4.1; cytoskeleton, structural genomics, st 100.0
1ef1_A294 Moesin; membrane, FERM domain, tail domain, membra 100.0
1h4r_A314 Merlin; FERM, neurofibromatosis, NF2, structural p 100.0
2i1j_A 575 Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, 100.0
3ivf_A371 Talin-1; FERM domain, cell membrane, cell projecti 100.0
1mix_A206 Talin; focal adhesion, integrin binding, FERM doma 100.0
4dxa_B322 KREV interaction trapped protein 1; GTPase, FERM, 100.0
4f7g_A222 Talin-1; alpha-helix bundle, integrin activation, 100.0
3pvl_A655 Myosin VIIA isoform 1; protein complex, novel fold 100.0
3au4_A555 Myosin-X; protein-protein complex, motor protein c 100.0
2al6_A375 Focal adhesion kinase 1; transferase; 2.35A {Gallu 100.0
4eku_A392 Protein-tyrosine kinase 2-beta; proline-rich tyros 99.97
2j0j_A 656 Focal adhesion kinase 1; cell migration, FERM, tra 99.93
1hbk_A89 ACBP, acyl-COA binding protein; fatty acid metabol 98.06
3epy_A89 Acyl-COA-binding domain-containing protein 7; acyl 98.04
2cb8_A87 Acyl-COA-binding protein; acyl-coenzyme A binding 98.01
1st7_A86 ACBP, acyl-COA-binding protein; four helix bundle, 97.94
2cop_A109 Acyl-coenzyme A binding domain containing 6; acyl 97.81
2lbb_A96 Acyl COA binding protein; protein binding, structu 97.73
2wh5_A106 Acyl-COA-binding domain-containing protein 4; alte 97.6
2cqu_A116 Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA bi 97.52
3flv_A119 Acyl-COA-binding domain-containing protein 5; lipi 97.52
3fp5_A106 Acyl-COA binding protein; ACBP, cacao disease, fat 97.43
1xr0_B129 FGFR signalling adaptor SNT-1; phosphotyrosine bin 83.12
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A Back     alignment and structure
Probab=100.00  E-value=4.4e-51  Score=350.07  Aligned_cols=194  Identities=40%  Similarity=0.707  Sum_probs=182.9

Q ss_pred             CCCCCCCCccccccCCCCCeEEEEEEEEcCCCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCC
Q psy2836           2 RVFPLHSTRLFPKTANVDPLQFSFRVKFYPPDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDF   81 (215)
Q Consensus         2 ~~wl~~~~~l~~q~~~~~~~~l~frvkfy~~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~   81 (215)
                      ++||++++++.+|+++ .|++|+||+|||+++|..+.++.+++++|+|+++||++|++||+.|+|++||||++|+++|||
T Consensus        70 ~~wLd~~k~i~~q~~~-~~~~l~frvkfy~~~~~~l~~~~tr~l~ylQ~~~dil~G~~~c~~e~a~~LAAl~~Qae~Gd~  148 (296)
T 3qij_A           70 KTWLDSAKEIKKQVRG-VPWNFTFNVKFYPPDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDY  148 (296)
T ss_dssp             EEECCTTSBHHHHC----CCEEEEEESSCCSCGGGSSCHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHCSC
T ss_pred             cchhccchhHHHhcCC-CCcEEEEEEEEeCCCchhccCHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHhcCCC
Confidence            4799999999999875 689999999999999998999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcccccccccccccChHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhcCCCCCceeeeeecCCCCeEEEEEeCCce
Q psy2836          82 NPEEHVGNYVADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTYGVDPQPVKDHAGNQIYLGINHTGI  161 (215)
Q Consensus        82 ~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~h~~l~g~s~~~A~~~yL~~~~~l~~YG~~~f~v~~~~~~~~~lGv~~~Gi  161 (215)
                      +++.|..+|++...++|.+.++|+++|.+.|++++|+|+.+|+.+||+.|++||+||+++|.|+++.|.+++||||++||
T Consensus       149 ~~~~~~~~yl~~~~~~P~~~~~~~~~I~~~h~~~~g~s~~eA~~~yL~~a~~l~~yG~~~f~vk~~~~~~~~LgV~~~Gi  228 (296)
T 3qij_A          149 DPELHGVDYVSDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMYGVDLHKAKDLEGVDIILGVCSSGL  228 (296)
T ss_dssp             CHHHHTTCCCTTSCCSSSCCHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHTTSTTTTCEEEEEECTTSCEEEEEECSSEE
T ss_pred             CccccchhhCcHhhcCCcCHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHhcccccCceEEEEEcCCCCEEEEEECCCeE
Confidence            99888889999888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcCCeeeeEEecccccceeeeCcEEEEEeeecC
Q psy2836         162 LTFLGNRRTTRYLWKQVQNINYEGKMFIVHLVFHE  196 (215)
Q Consensus       162 ~v~~~~~~~~~~~w~~I~~~~~~~~~f~I~~~~~~  196 (215)
                      .++++++++..|+|++|.+|++++++|+|++...+
T Consensus       229 ~v~~~~~kl~~f~w~~I~~~s~~~k~F~i~~~~~~  263 (296)
T 3qij_A          229 LVYKDKLRINRFPWPKVLKISYKRSSFFIKIRPGE  263 (296)
T ss_dssp             EEEETTEEEEEEEGGGEEEEEEETTEEEEEEC---
T ss_pred             EEEeCCCeEEEEEhhhcCEEEecCCEEEEEEecCc
Confidence            99999999999999999999999999999998653
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A Back     alignment and structure
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A Back     alignment and structure
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A Back     alignment and structure
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A Back     alignment and structure
>1mix_A Talin; focal adhesion, integrin binding, FERM domain, cytoskeleton, structural protein; 1.75A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 PDB: 1miz_B 1mk7_B 1mk9_B 1y19_B 3g9w_A 2hrj_A 2g35_A* 2k00_A 2h7d_A* 2h7e_A* 2kgx_B Back     alignment and structure
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A Back     alignment and structure
>4f7g_A Talin-1; alpha-helix bundle, integrin activation, cell adhesion; 2.05A {Mus musculus} Back     alignment and structure
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus} Back     alignment and structure
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A Back     alignment and structure
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A Back     alignment and structure
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens} Back     alignment and structure
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A* Back     alignment and structure
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1 Back     alignment and structure
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1 Back     alignment and structure
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A Back     alignment and structure
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae} Back     alignment and structure
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis} Back     alignment and structure
>2wh5_A Acyl-COA-binding domain-containing protein 4; alternative splicing, fatty acid metabolism, lipid transport, lipid binding protein; HET: STE ST9 COA; 2.60A {Homo sapiens} Back     alignment and structure
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens} Back     alignment and structure
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0 Back     alignment and structure
>1xr0_B FGFR signalling adaptor SNT-1; phosphotyrosine binding domain, PTB, TRK, NPXPY motif,, signaling protein/growth factor receptor complex; NMR {Homo sapiens} SCOP: b.55.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 215
d1gg3a1106 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1 4e-35
d1h4ra1111 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) 7e-32
d1mixa1114 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus 2e-30
d1ef1a1111 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [ 7e-30
d1gg3a292 b.55.1.5 (A:188-279) Erythroid membrane protein 4. 7e-17
d1ef1a299 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) 1e-15
d1h4ra299 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) 9e-15
d2al6a1123 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chic 4e-12
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 106 Back     information, alignment and structure

class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  118 bits (296), Expect = 4e-35
 Identities = 50/106 (47%), Positives = 68/106 (64%)

Query: 32  PDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYV 91
           PDP +L EDITRY + LQL++D++ GRL C     A LG+Y +Q ELGD++PE H  +YV
Sbjct: 1   PDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYV 60

Query: 92  ADLKILLKQTTYIEEKMMEFHEKLKDQTPEQVETAFLRKAACLDTY 137
           +D K+   QT  +EEK+ME H+  +  TP Q +  FL  A  L  Y
Sbjct: 61  SDFKLAPNQTKELEEKVMELHKSYRSMTPAQADLEFLENAKKLSMY 106
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Length = 114 Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Length = 92 Back     information, alignment and structure
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Length = 99 Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query215
d1gg3a1106 Erythroid membrane protein 4.1R {Human (Homo sapie 99.97
d1mixa1114 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 99.96
d1h4ra1111 Merlin {Human (Homo sapiens) [TaxId: 9606]} 99.95
d1ef1a1111 Moesin {Human (Homo sapiens) [TaxId: 9606]} 99.95
d2al6a1123 Focal adhesion kinase 1 {Chicken (Gallus gallus) [ 99.89
d1ef1a299 Moesin {Human (Homo sapiens) [TaxId: 9606]} 99.6
d1h4ra299 Merlin {Human (Homo sapiens) [TaxId: 9606]} 99.6
d1gg3a292 Erythroid membrane protein 4.1R {Human (Homo sapie 99.52
d1mixa292 Talin {Chicken (Gallus gallus) [TaxId: 9031]} 98.56
d1ef1a384 Moesin {Human (Homo sapiens) [TaxId: 9606]} 98.29
d1h4ra384 Merlin {Human (Homo sapiens) [TaxId: 9606]} 98.23
d1hb6a_86 Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 98.19
d1gg3a381 Erythroid membrane protein 4.1R {Human (Homo sapie 98.16
d1hbka_89 Acyl-CoA binding protein {Plasmodium falciparum [T 97.7
d1xr0b_129 FGFR substrate 2 (SNT-1) {Human (Homo sapiens) [Ta 94.64
d1j0wa_99 Downstream of tyrosine kinase 5, Dok-5 {Human (Hom 91.74
>d1gg3a1 a.11.2.1 (A:82-187) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: Acyl-CoA binding protein-like
superfamily: Second domain of FERM
family: Second domain of FERM
domain: Erythroid membrane protein 4.1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.7e-32  Score=198.37  Aligned_cols=106  Identities=47%  Similarity=0.793  Sum_probs=102.7

Q ss_pred             CCCCCcchHHHHHHHHHHHHHHhhccccccCHHHHHHHHhHHHHHHhCCCCCCCCcccccccccccccChHHHHHHHHHH
Q psy2836          32 PDPFKLKEDITRYQIYLQLKRDLLHGRLYCDPNAAAQLGAYILQEELGDFNPEEHVGNYVADLKILLKQTTYIEEKMMEF  111 (215)
Q Consensus        32 ~~~~~l~~~~t~~l~ylQ~~~dvl~g~~~~~~e~a~~LaaL~~Qa~~Gd~~~~~~~~~yl~~~~~~p~~~~~~~~~i~~~  111 (215)
                      |+|..|.++.|||+||+|+|+||++|++||+.++|++||||++||++|||+++.|..+|++...++|...++|+++|.+.
T Consensus         1 pdp~~L~~e~Tr~l~ylQlr~~i~~G~~~~~~~~a~~Laal~~Qae~GD~~~~~~~~~yl~~~~~~p~~~~~~~~~I~~~   80 (106)
T d1gg3a1           1 PDPAQLTEDITRYYLCLQLRQDIVAGRLPCSFATLALLGSYTIQSELGDYDPELHGVDYVSDFKLAPNQTKELEEKVMEL   80 (106)
T ss_dssp             SSGGGSSCHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHCSCCTTSCSSCCGGGSCCCSSCCHHHHHHHHHH
T ss_pred             CCHHHhccHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhCCCCccccchhhhhHHhcCCccHHHHHHHHHHH
Confidence            47888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCCCHHHHHHHHHHHHhcCCCC
Q psy2836         112 HEKLKDQTPEQVETAFLRKAACLDTY  137 (215)
Q Consensus       112 h~~l~g~s~~~A~~~yL~~~~~l~~Y  137 (215)
                      |++++|||+++|+..||++|++||+|
T Consensus        81 h~~l~G~s~~~A~~~fL~~~~~l~~Y  106 (106)
T d1gg3a1          81 HKSYRSMTPAQADLEFLENAKKLSMY  106 (106)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHSTTT
T ss_pred             HHHccCcCHHHHHHHHHHHHhcCCCC
Confidence            99999999999999999999999998
>d1mixa1 a.11.2.1 (A:195-308) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1h4ra1 a.11.2.1 (A:104-214) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ef1a1 a.11.2.1 (A:88-198) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2al6a1 a.11.2.1 (A:131-253) Focal adhesion kinase 1 {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ef1a2 b.55.1.5 (A:199-297) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h4ra2 b.55.1.5 (A:215-313) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gg3a2 b.55.1.5 (A:188-279) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mixa2 b.55.1.5 (A:309-400) Talin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hb6a_ a.11.1.1 (A:) Acyl-CoA binding protein {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hbka_ a.11.1.1 (A:) Acyl-CoA binding protein {Plasmodium falciparum [TaxId: 5833]} Back     information, alignment and structure
>d1xr0b_ b.55.1.2 (B:) FGFR substrate 2 (SNT-1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j0wa_ b.55.1.2 (A:) Downstream of tyrosine kinase 5, Dok-5 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure