Psyllid ID: psy2846

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390--
Protein Sequence
MFETETHSWNFDFSLTSDEELPVVPARHYVFNAGAAGGGGYHQQDDNHPVPPVRENNLLYDEVDNELEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNW
Secondary Structure (PSIPRED)
cccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHHcccccccEEEEcccccEEEEEEEEccccccccccEEEEEEEccccccccccEEEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEEEEEEccccccccccEEEEEEEccccccccccEEEEcccccEccEccccEEEEHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcc
Coil and Loop (DISEMBL)
mfetethswnfdfsltsdeelpvvparhyvfnagaaggggyhqqddnhpvppvrennllydevdneleegddlpapqnnpdepeLQRRIEELSAYNknnravltsqntggssihslppeVLITVFSYLDdlslcsvsRACTRWFTIIADLISSDQWRYFVLtrfplfnsnitvsNWYSVYAKLVestpcytclqhmirpdtsslqedntWRHFRLRkeyndikldppdgiqaqpldnkrchwmatiagpvaspyeggvFYLYiripfsypmhppkvkfitrifhpnvsrhgdlshapaqgeiyhsnissecAETWGRRHRLYSILFSNsirdhiqrrprvrfplddlslcsvsRACTRWFTIIADLISSDQWRYFVLtrfplfnsnitvsnw
Flexible Loop (DISEMBL)
mfetethswnfdfsltsdeELPVVPARHYVFNAGAAGGGGYHQQDDNHPVPPVRENNLLYDEVDNELeegddlpapqnnpdePELQRRIEELSAYNKNNRAVLtsqntggssihSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMirpdtsslqednTWRHFRLRKeyndikldppdgIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFsnsirdhiqrrprvrfplddlslcSVSRACTRWFTIIADLISSDQWRYFVLTRfplfnsnitvsnw
Low Complexity Region (SEG)
MFETETHSWNFDFSLTSDEELPVVPARHYVFNagaaggggYHQQDDNHPVPPVRENNLLYDEVDNELEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNW
Disordered region (IsUnstruct)
********WNFDFSLTSDEELPVVPARHYVFNAGAAGGG****************************************************************************LPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNIT****
Disordered Region (DISOPRED)
******HSWNFDFSLTSDEELPVVPARHYVFNA*********************************************************************************SLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYT**************************EYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNI**S**
Disordered Region (DISEMBL)
********WNFDFSLTSDEELPVVPARHYVFNAGAAGGGGYHQQDDNHPVPPVRENNLLYDEVDNELEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNW
Disordered Region (DISPRO)
*****THSWNFDFSLTSDEELPVVPARHYVFNAGA**********DNH**********LYDEV**ELEEGDDLPAPQNNPDEPELQRRIEELSAYNK*************SSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIRPDTSS*QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFETETHSWNFDFSLTSDEELPVVPARHYVFNAGAAGGGGYHQQDDNHPVPPVRENNLLYDEVDNELEEGDDLPAPQNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	392	2.2.26 [Sep-21-2011]
P62840	147	Ubiquitin-conjugating enz	N/A	N/A	0.204	0.544	0.512	7e-18
P62839	147	Ubiquitin-conjugating enz	yes	N/A	0.204	0.544	0.512	7e-18
P62838	147	Ubiquitin-conjugating enz	yes	N/A	0.204	0.544	0.512	7e-18
P62837	147	Ubiquitin-conjugating enz	yes	N/A	0.204	0.544	0.512	7e-18
Q1RMX2	147	Ubiquitin-conjugating enz	yes	N/A	0.204	0.544	0.512	7e-18
Q06AA9	147	Ubiquitin-conjugating enz	yes	N/A	0.204	0.544	0.512	7e-18
P70711	147	Ubiquitin-conjugating enz	no	N/A	0.204	0.544	0.512	9e-18
Q6ZWY6	147	Ubiquitin-conjugating enz	no	N/A	0.204	0.544	0.512	9e-18
P35129	147	Ubiquitin-conjugating enz	yes	N/A	0.204	0.544	0.5	2e-17
P61078	147	Ubiquitin-conjugating enz	yes	N/A	0.204	0.544	0.5	2e-17

>sp|P62840|UB2D2_XENLA Ubiquitin-conjugating enzyme E2 D2 OS=Xenopus laevis GN=ube2d2 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53.
Xenopus laevis (taxid: 8355)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: 1EC: 9

>sp|P62839|UB2D2_RAT Ubiquitin-conjugating enzyme E2 D2 OS=Rattus norvegicus GN=Ube2d2 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3 (By similarity). Mediates ubiquitination of PEX5.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62838|UB2D2_MOUSE Ubiquitin-conjugating enzyme E2 D2 OS=Mus musculus GN=Ube2d2 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P62837|UB2D2_HUMAN Ubiquitin-conjugating enzyme E2 D2 OS=Homo sapiens GN=UBE2D2 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q1RMX2|UB2D2_BOVIN Ubiquitin-conjugating enzyme E2 D2 OS=Bos taurus GN=UBE2D2 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q06AA9|UB2D2_PIG Ubiquitin-conjugating enzyme E2 D2 OS=Sus scrofa GN=UBE2D2 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-48'-linked polyubiquitination. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection. Essential for viral activation of IRF3.

Sus scrofa (taxid: 9823)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P70711|U2D2B_RAT Ubiquitin-conjugating enzyme E2 D2B OS=Rattus norvegicus GN=Ube2d2b PE=1 SV=1

 Score = 91.7 bits (226), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 51/80 (63%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+     HW ATI GP  SPY+GG F+L I  P  YP  P
Sbjct: 5   RIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV+F TRI+HPNV+ +G +
Sbjct: 65  PKVEFTTRIYHPNVNSNGSI 84

Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection Plays a role in early maturation of the testis.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|Q6ZWY6|U2D2B_MOUSE Ubiquitin-conjugating enzyme E2 D2B OS=Mus musculus GN=Ube2d2b PE=2 SV=1

 Score = 91.7 bits (226), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 51/80 (63%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+     HW ATI GP  SPY+GG F+L I  P  YP  P
Sbjct: 5   RIHKELNDLAQDPPAQCSAGPVGEDMFHWQATIMGPNDSPYQGGAFFLTIDFPTEYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV+F TRI+HPNV+ +G +
Sbjct: 65  PKVEFTTRIYHPNVNSNGSI 84

Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins. Functions in the E6/E6-AP-induced ubiquitination of p53/TP53. Mediates ubiquitination of PEX5 and autoubiquitination of STUB1 and TRAF6. Involved in the signal-induced conjugation and subsequent degradation of NFKBIA, FBXW2-mediated GCM1 ubiquitination and degradation, MDM2-dependent degradation of p53/TP53 and the activation of MAVS in the mitochondria by DDX58/RIG-I in response to viral infection (By similarity). Plays a role in early maturation of the testis.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P35129|UBC2_CAEEL Ubiquitin-conjugating enzyme E2 2 OS=Caenorhabditis elegans GN=let-70 PE=1 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE  D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

Catalyzes the covalent attachment of ubiquitin to other proteins. Mediates the selective degradation of short-lived and abnormal proteins.

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

>sp|P61078|UB2D3_RAT Ubiquitin-conjugating enzyme E2 D3 OS=Rattus norvegicus GN=Ube2d3 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE +D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

Accepts ubiquitin from the E1 complex and catalyzes its covalent attachment to other proteins. In vitro catalyzes 'Lys-11'-, as well as 'Lys-48'-linked polyubiquitination. Cooperates with the E2 CDC34 and the SCF(FBXW11) E3 ligase complex for the polyubiquitination of NFKBIA leading to its subsequent proteasomal degradation. Acts as an initiator E2, priming the phosphorylated NFKBIA target at positions 'Lys-21' and/or 'Lys-22' with a monoubiquitin. Ubiquitin chain elongation is then performed by CDC34, building ubiquitin chains from the UBE2D3-primed NFKBIA-linked ubiquitin. Acts also as an initiator E2, in conjunction with RNF8, for the priming of PCNA. Monoubiquitination of PCNA, and its subsequent polyubiquitination, are essential events in the operation of the DNA damage tolerance (DDT) pathway that is activated after DNA damage caused by UV or chemical agents during S-phase. Associates with the BRCA1/BARD1 E3 ligase complex to perform ubiquitination at DNA damage sites following ionizing radiation leading to DNA repair. Targets DAPK3 for ubiquitination which influences promyelocytic leukemia protein nuclear body (PML-NB) formation in the nucleus. In conjunction with the MDM2 and TOPORS E3 ligases, functions ubiquitination of p53/TP53. Supports NRDP1-mediated ubiquitination and degradation of ERBB3 and of BRUCE which triggers apoptosis. In conjunction with the CBL E3 ligase, targets EGFR for polyubiquitination at the plasma membrane as well as during its internalization and transport on endosomes. In conjunction with the STUB1 E3 quality control E3 ligase, ubiquitinates unfolded proteins to catalyze their immediate destruction.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: 1

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
405965312	395	Ubiquitin-conjugating enzyme E2 D2 [Cras	0.461	0.458	0.538	5e-54
307181340	547	Ubiquitin-conjugating enzyme E2-17 kDa [	0.464	0.332	0.516	2e-52
332030057	538	Ubiquitin-conjugating enzyme E2 11 [Acro	0.464	0.338	0.505	4e-52
443727713	382	hypothetical protein CAPTEDRAFT_220586 [	0.482	0.494	0.505	5e-52
307199504	516	Ubiquitin-conjugating enzyme E2 11 [Harp	0.642	0.488	0.404	6e-52
322789063	541	hypothetical protein SINV_11848 [Solenop	0.464	0.336	0.510	1e-51
345496914	524	PREDICTED: hypothetical protein LOC10011	0.543	0.406	0.460	1e-51
350405890	530	PREDICTED: hypothetical protein LOC10074	0.525	0.388	0.461	3e-51
340711453	530	PREDICTED: hypothetical protein LOC10064	0.556	0.411	0.454	4e-51
328788257	530	PREDICTED: hypothetical protein LOC41196	0.522	0.386	0.473	5e-51

>gi|405965312|gb|EKC30694.1| Ubiquitin-conjugating enzyme E2 D2 [Crassostrea gigas]

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 98/182 (53%), Positives = 127/182 (69%), Gaps = 1/182 (0%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNIT 172
           + S+PPEVL+ VF YLDD+SL +  R CTRW  I+    +  QW+ F   R+PLF     
Sbjct: 138 VDSIPPEVLLVVFKYLDDISLWTAGRVCTRWRQILDGETTDAQWKEFCKLRWPLFYPQYR 197

Query: 173 VSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQA 232
           V  W ++Y KL+ES+PC  CL+ M+   T  ++E N+WRH RLR E   +K DPP+GI+A
Sbjct: 198 VKKWKTIYTKLLESSPCKYCLESMMLQSTPPIEE-NSWRHRRLRSELKTLKSDPPEGIKA 256

Query: 233 QPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
            PLD   CHW A+I GP  SPYEGG+F LY++IP SYPM PPKV+FIT+IFHPN+SRHGD
Sbjct: 257 TPLDRHCCHWQASITGPQGSPYEGGLFLLYLQIPQSYPMRPPKVRFITKIFHPNISRHGD 316

Query: 293 LS 294
           + 
Sbjct: 317 VG 318

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|307181340|gb|EFN68974.1| Ubiquitin-conjugating enzyme E2-17 kDa [Camponotus floridanus]

 Score =  213 bits (541), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/182 (51%), Positives = 124/182 (68%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNIT 172
           +  LPPEVL+ +FS+LDD+SL S +  C RW  +++  ++  QW+  V  R+PL+     
Sbjct: 297 VERLPPEVLLAIFSHLDDISLWSAANVCRRWCGLLSTHVTQLQWKQHVKLRWPLYKPIGC 356

Query: 173 VSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQA 232
           V NWY VY  L  S PC TCL         S  E+N+WR  RLR E   +++DPP+GI+A
Sbjct: 357 VKNWYRVYDYLASSAPCRTCLAQTSLRSRPSRMEENSWRRNRLRSELKSLRIDPPEGIEA 416

Query: 233 QPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
            PLD+  CHW ATI GPV SPYEGG+FYLY+++PFSYPM PP V+F+T+I HPNVSRHGD
Sbjct: 417 MPLDHMCCHWQATITGPVGSPYEGGLFYLYLQVPFSYPMCPPVVRFLTKILHPNVSRHGD 476

Query: 293 LS 294
           + 
Sbjct: 477 VG 478

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030057|gb|EGI69882.1| Ubiquitin-conjugating enzyme E2 11 [Acromyrmex echinatior]

 Score =  211 bits (538), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 92/182 (50%), Positives = 124/182 (68%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNIT 172
           +  LPPEVL+ +FS+LDD+SL S +  C RW  +++  ++  QW+  V  R+PL+     
Sbjct: 288 VERLPPEVLLAIFSHLDDISLWSAANVCRRWCGLLSTHVTQLQWKQHVKLRWPLYKPIGC 347

Query: 173 VSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQA 232
           + NWY VY  L  S PC TCL         +  E+N+WR  RLR E   +++DPP+GI+A
Sbjct: 348 IKNWYKVYDHLASSAPCRTCLAQTSLRSRPARMEENSWRRNRLRSELKSLRIDPPEGIEA 407

Query: 233 QPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
            PLD+  CHW ATI GPV SPYEGG+FYLY+++PFSYPM PP V+F+T+I HPNVSRHGD
Sbjct: 408 MPLDHMCCHWQATITGPVGSPYEGGLFYLYLQVPFSYPMCPPIVRFLTKILHPNVSRHGD 467

Query: 293 LS 294
           + 
Sbjct: 468 VG 469

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|443727713|gb|ELU14345.1| hypothetical protein CAPTEDRAFT_220586 [Capitella teleta]

 Score =  211 bits (537), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 96/190 (50%), Positives = 130/190 (68%), Gaps = 1/190 (0%)

Query: 105 SQNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRF 164
           S+      I SLPPEVL+ VF +LDD+SL S  + C RW  ++    S D WR F+  R+
Sbjct: 117 SEKLDDGLIDSLPPEVLLNVFRFLDDISLWSAGKVCNRWRQLLEAETSDDCWRRFIQLRW 176

Query: 165 PLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKL 224
           PLF+    V  W +V+++L+ES PC  CL+ M+     ++ E+N+WRH RLR E   ++ 
Sbjct: 177 PLFHPVYKVECWRTVFSRLLESAPCLFCLESMMLQSHQAV-EENSWRHRRLRIELKTLRA 235

Query: 225 DPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH 284
           DPP+GIQA PLD +RCHW A I GP  SPY+GG+FYLY++IP +YPM PP V+FIT+IFH
Sbjct: 236 DPPEGIQAIPLDRQRCHWQACITGPQGSPYQGGLFYLYVQIPNNYPMRPPVVRFITKIFH 295

Query: 285 PNVSRHGDLS 294
           PN+S HGD+ 
Sbjct: 296 PNISWHGDVG 305

Source: Capitella teleta

Species: Capitella teleta

Genus: Capitella

Family: Capitellidae

Order: Capitellida

Class: Polychaeta

Phylum: Annelida

Superkingdom: Eukaryota

>gi|307199504|gb|EFN80117.1| Ubiquitin-conjugating enzyme E2 11 [Harpegnathos saltator]

 Score =  211 bits (536), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 112/277 (40%), Positives = 152/277 (54%), Gaps = 25/277 (9%)

Query: 39  GGYHQQDDNHPVPPVRENNLLYDEV------DNELEEGDDLPAPQNN---------PDEP 83
            G + Q+  H  P + E +L   E       +   E  D+ P  Q N         P  P
Sbjct: 175 NGQNDQNATHHAPDLVEEDLQSPETFALSEHNQNNENADNAPQYQWNYRVYDDVGEPSRP 234

Query: 84  -ELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTR 142
             L  R+E LS Y       +         +  LPPEVL+ +F YLDD+SL S +  C R
Sbjct: 235 YNLSERLEILSNYKHIEHEPINEPGL----VERLPPEVLLAIFLYLDDISLWSAANVCRR 290

Query: 143 WFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIR---- 198
           W  +++  ++  QW+++V  R+PL+     + +WY VY  L  S PC TCL H       
Sbjct: 291 WCGLVSTHVTQSQWKHYVKVRWPLYKPIGYIKDWYKVYDYLASSAPCRTCLAHSTSLHTK 350

Query: 199 -PDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGG 257
             D     E+N+WR  RLR E   +++DPP+GI+A PLD   CHW ATI GPV SPYEGG
Sbjct: 351 LKDWGPRLEENSWRKNRLRSELKSLRIDPPEGIEAVPLDKMCCHWQATITGPVGSPYEGG 410

Query: 258 VFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLS 294
           +FYLY+++P SYPM PP V+F+T+I HPNVSRHGD+ 
Sbjct: 411 LFYLYLKVPLSYPMCPPVVRFLTKILHPNVSRHGDVG 447

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789063|gb|EFZ14516.1| hypothetical protein SINV_11848 [Solenopsis invicta]

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 93/182 (51%), Positives = 123/182 (67%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNIT 172
           +  LPPEVL+ +FS+LDD+SL S +  C RW  +++  ++  QW+  V  R+PL+     
Sbjct: 292 VERLPPEVLLAIFSHLDDISLWSAANVCRRWCGLLSTHVTQLQWKRHVKLRWPLYKPIGC 351

Query: 173 VSNWYSVYAKLVESTPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQA 232
           V NWY VY  L  S PC TCL            E+N+WR  RLR E   +++DPP+GI+A
Sbjct: 352 VQNWYKVYDYLASSAPCRTCLAQTSLRSRPPRMEENSWRRNRLRSELKSLRIDPPEGIEA 411

Query: 233 QPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
            PLD+  CHW ATI GPV SPYEGG+FYLY+++PFSYPM PP V+F+T+I HPNVSRHGD
Sbjct: 412 MPLDHMCCHWQATITGPVGSPYEGGLFYLYLQVPFSYPMCPPVVRFLTKILHPNVSRHGD 471

Query: 293 LS 294
           + 
Sbjct: 472 VG 473

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345496914|ref|XP_001599676.2| PREDICTED: hypothetical protein LOC100114754 [Nasonia vitripennis]

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/226 (46%), Positives = 139/226 (61%), Gaps = 13/226 (5%)

Query: 75  APQNNPDEP-ELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSL 133
           A +  P  P  L +R++ L+ Y +     ++        +  LPPEVL+ VFS+LDD+SL
Sbjct: 237 AEKGEPSRPWNLSKRLDLLTNYKQIEHKSISEPGL----VERLPPEVLLAVFSHLDDVSL 292

Query: 134 CSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFN-SNITVSNWYSVYAKLVESTPCYTC 192
              +  C RW  +++  I+ D W+  V  R+PLF  +N  V NWY  Y +L  S PC TC
Sbjct: 293 WCAANVCRRWCNLLSTHITPDLWQRHVKLRWPLFKPTNGMVGNWYKAYDRLASSAPCKTC 352

Query: 193 LQ----HMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAG 248
           L     H  RP      E+N+WR  RLR E   ++ DPP+GI+A PLD   CHW ATI G
Sbjct: 353 LSQTSLHRTRPPKV---EENSWRRNRLRIELKGLRSDPPEGIEATPLDQMCCHWQATITG 409

Query: 249 PVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLS 294
           P  SPYEGGVFYLY+++P+SYPM PP V+F+T+I HPNVSRHGD+ 
Sbjct: 410 PAGSPYEGGVFYLYLQVPYSYPMRPPVVRFLTKILHPNVSRHGDVG 455

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350405890|ref|XP_003487584.1| PREDICTED: hypothetical protein LOC100741617 [Bombus impatiens]

 Score =  209 bits (531), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 97/210 (46%), Positives = 132/210 (62%), Gaps = 4/210 (1%)

Query: 85  LQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWF 144
           L  R+E L+ Y       +         +  LPPEVL+ VFS+LDD+SL S +  C RW 
Sbjct: 256 LSERLEMLTNYKHAKYESIAEPGL----MERLPPEVLLVVFSHLDDVSLWSAANVCRRWC 311

Query: 145 TIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHMIRPDTSSL 204
            +++  ++  QW+  V  R+PL+    TV NWY +Y  L  S PC TCL        S  
Sbjct: 312 GLLSTHVTPQQWQRNVKLRWPLYKPIGTVKNWYKLYDFLASSAPCRTCLAQACLMSRSPS 371

Query: 205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIR 264
            E+N+WR  RL  E   +++DPP+GI+A PLD K CHW ATI GPV SPYEGG+FYLY++
Sbjct: 372 IEENSWRKNRLHSELKSLRIDPPEGIEATPLDQKCCHWQATITGPVGSPYEGGLFYLYLQ 431

Query: 265 IPFSYPMHPPKVKFITRIFHPNVSRHGDLS 294
           +P +YP++PP V+F+T+I HPNVSRHGD+ 
Sbjct: 432 VPCTYPLYPPIVRFLTKILHPNVSRHGDVG 461

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711453|ref|XP_003394290.1| PREDICTED: hypothetical protein LOC100642558 [Bombus terrestris]

 Score =  208 bits (530), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 99/218 (45%), Positives = 133/218 (61%)

Query: 77  QNNPDEPELQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSLCSV 136
           QNN  E      + E      N + V          +  LPPEVL+ VFS+LDD+SL S 
Sbjct: 244 QNNTGEMSRSNNLSERLEMLTNYKHVEYESIAEPGLMERLPPEVLLVVFSHLDDVSLWSA 303

Query: 137 SRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHM 196
           +  C RW  +++  ++  QW+  V  R+PL+    TV NWY +Y  L  S PC TCL   
Sbjct: 304 ANVCRRWCGLLSTHVTPQQWQRNVKLRWPLYKPIGTVKNWYKLYDFLASSAPCRTCLAQA 363

Query: 197 IRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEG 256
                S   E+N+WR  RL  E   +++DPP+GI+A PLD K CHW ATI GPV SPYEG
Sbjct: 364 CLMSRSPSIEENSWRKNRLHSELKSLRIDPPEGIEATPLDQKCCHWQATITGPVGSPYEG 423

Query: 257 GVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLS 294
           G+FYLY+++P +YP++PP V+F+T+I HPNVSRHGD+ 
Sbjct: 424 GLFYLYLQVPCTYPLYPPIVRFLTKILHPNVSRHGDVG 461

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788257|ref|XP_395429.3| PREDICTED: hypothetical protein LOC411962 [Apis mellifera]

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 100/211 (47%), Positives = 137/211 (64%), Gaps = 6/211 (2%)

Query: 85  LQRRIEELSAYNKNNRAVLTSQNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWF 144
           L  R+E L+ Y       ++        +  LPPEVL+ VFS+LDD+SL S +  C RW 
Sbjct: 256 LSERLEMLTNYKHVEHEPISELGL----MERLPPEVLLVVFSHLDDVSLWSAANVCRRWC 311

Query: 145 TIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVESTPCYTCL-QHMIRPDTSS 203
            +++  ++S QW+  V  R+PL+    +V NWY VY  L  S PC TCL Q  +R  +  
Sbjct: 312 GLLSTHVTSQQWQQNVKLRWPLYKPIGSVKNWYKVYDFLASSAPCRTCLAQTCLRSRSPR 371

Query: 204 LQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYI 263
           +QE N+WR  RL  E   +++DPP+GI+A PLD   CHW ATI GPV SPYEGG+FYLY+
Sbjct: 372 IQE-NSWRKNRLHSELKSLRIDPPEGIEATPLDQMCCHWQATITGPVGSPYEGGLFYLYL 430

Query: 264 RIPFSYPMHPPKVKFITRIFHPNVSRHGDLS 294
           ++P SYP++PP V+F+T+I HPNVSRHGD+ 
Sbjct: 431 QVPCSYPLYPPIVRFLTKILHPNVSRHGDVG 461

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	392
FB|FBgn0027609	491	morgue "modifier of rpr and gr	0.484	0.386	0.400	3.2e-39
UNIPROTKB|F1S1P0	147	LOC100525551 "Uncharacterized	0.204	0.544	0.5	1.8e-19
UNIPROTKB|Q1RMX2	147	UBE2D2 "Ubiquitin-conjugating	0.204	0.544	0.512	3.1e-19
UNIPROTKB|J9NS22	147	UBE2D2 "Uncharacterized protei	0.204	0.544	0.512	3.1e-19
UNIPROTKB|P62837	147	UBE2D2 "Ubiquitin-conjugating	0.204	0.544	0.512	3.1e-19
UNIPROTKB|Q06AA9	147	UBE2D2 "Ubiquitin-conjugating	0.204	0.544	0.512	3.1e-19
MGI|MGI:1930715	147	Ube2d2a "ubiquitin-conjugating	0.204	0.544	0.512	3.1e-19
RGD|1591897	147	Ube2d2 "ubiquitin-conjugating	0.204	0.544	0.512	3.1e-19
UNIPROTKB|F1LQU4	144	Ube2d3 "Ubiquitin-conjugating	0.204	0.555	0.512	6.8e-19
ZFIN|ZDB-GENE-040426-1609	147	ube2d1a "ubiquitin-conjugating	0.204	0.544	0.5	6.8e-19

FB|FBgn0027609 morgue "modifier of rpr and grim, ubiquitously expressed" [Drosophila melanogaster (taxid:7227)]

 Score = 398 (145.2 bits), Expect = 3.2e-39, Sum P(2) = 3.2e-39
 Identities = 81/202 (40%), Positives = 112/202 (55%)

Query:   104 TSQNTGGSS---IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFV 160
             +     GSS   ++ +P EV++ +F+YLDD+SL   S  C +W  I+    +   W+ ++
Sbjct:   219 SGSGASGSSRNIVNIIPVEVMLKIFAYLDDMSLWMASEVCKQWHDIVGKNTAQSMWKAYI 278

Query:   161 LTRFPLFNSNITVSNWYSVYAKLVESTPCYTCLQHM---------IRPDTSSLQEDNTWR 211
               R+PLF+S     NWY +Y  L+ S  C TCL  M           P     +  N  R
Sbjct:   279 KQRWPLFDSLADNPNWYRLYGALMSSCFCRTCLIEMGGRGQDAQEADPQLGDREPGNVMR 338

Query:   212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
             +  LR E N +     +GI A PLD +  +W ATI GP  SPYEGG F+L+I  P  YPM
Sbjct:   339 NNFLRGEANLLNSYESEGISAIPLDRQNNYWQATILGPPGSPYEGGKFFLFIYFPERYPM 398

Query:   272 HPPKVKFITRIFHPNVSRHGDL 293
              PP V+F+T+I HPNVSRHGD+
Sbjct:   399 TPPTVRFLTKILHPNVSRHGDV 420

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS;NAS

GO:0006915 "apoptotic process" evidence=IMP;NAS

GO:1901694 "positive regulation of compound eye retinal cell apoptotic process" evidence=IMP

GO:0006917 "induction of apoptosis" evidence=NAS

GO:0046668 "regulation of retinal cell programmed cell death" evidence=NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=TAS

GO:0019787 "small conjugating protein ligase activity" evidence=TAS

UNIPROTKB|F1S1P0 LOC100525551 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 235 (87.8 bits), Expect = 1.8e-19, P = 1.8e-19
 Identities = 40/80 (50%), Positives = 54/80 (67%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R+ KE  D+  DPPD   A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     5 RIHKELLDLSRDPPDQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPSDYPFKP 64

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PK+ F T+I+HPN++R+G++
Sbjct:    65 PKIAFTTQIYHPNINRNGNI 84

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|Q1RMX2 UBE2D2 "Ubiquitin-conjugating enzyme E2 D2" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PKV F TRI+HPN++ +G +
Sbjct:    65 PKVAFTTRIYHPNINSNGSI 84

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9NS22 UBE2D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 233 (87.1 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PKV F TRI+HPN++ +G +
Sbjct:    65 PKVAFTTRIYHPNINSNGSI 84

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

UNIPROTKB|P62837 UBE2D2 "Ubiquitin-conjugating enzyme E2 D2" [Homo sapiens (taxid:9606)]

 Score = 233 (87.1 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PKV F TRI+HPN++ +G +
Sbjct:    65 PKVAFTTRIYHPNINSNGSI 84

GO:0005524 "ATP binding" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070936 "protein K48-linked ubiquitination" evidence=IDA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0033554 "cellular response to stress" evidence=TAS

GO:0061418 "regulation of transcription from RNA polymerase II promoter in response to hypoxia" evidence=TAS

GO:0071456 "cellular response to hypoxia" evidence=TAS

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0000209 "protein polyubiquitination" evidence=IDA

UNIPROTKB|Q06AA9 UBE2D2 "Ubiquitin-conjugating enzyme E2 D2" [Sus scrofa (taxid:9823)]

 Score = 233 (87.1 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PKV F TRI+HPN++ +G +
Sbjct:    65 PKVAFTTRIYHPNINSNGSI 84

GO:0070936 "protein K48-linked ubiquitination" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1930715 Ube2d2a "ubiquitin-conjugating enzyme E2D 2A" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PKV F TRI+HPN++ +G +
Sbjct:    65 PKVAFTTRIYHPNINSNGSI 84

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=ISO

RGD|1591897 Ube2d2 "ubiquitin-conjugating enzyme E2D 2" [Rattus norvegicus (taxid:10116)]

 Score = 233 (87.1 bits), Expect = 3.1e-19, P = 3.1e-19
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     5 RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PKV F TRI+HPN++ +G +
Sbjct:    65 PKVAFTTRIYHPNINSNGSI 84

GO:0000209 "protein polyubiquitination" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;ISS;IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0070936 "protein K48-linked ubiquitination" evidence=IEA;ISO;ISS

UNIPROTKB|F1LQU4 Ube2d3 "Ubiquitin-conjugating enzyme E2 D3" [Rattus norvegicus (taxid:10116)]

 Score = 230 (86.0 bits), Expect = 6.8e-19, P = 6.8e-19
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             RL KE +D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     1 RLHKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 60

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PKV F TRI+HPN++ +G +
Sbjct:    61 PKVAFTTRIYHPNINSNGSI 80

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1609 ube2d1a "ubiquitin-conjugating enzyme E2D 1a" [Danio rerio (taxid:7955)]

 Score = 230 (86.0 bits), Expect = 6.8e-19, P = 6.8e-19
 Identities = 40/80 (50%), Positives = 52/80 (65%)

Query:   214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R++KE  D++ DPP    A PL     HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct:     5 RIQKELQDLQRDPPSQCSAGPLGEDLFHWQATIMGPGDSPYQGGVFFLTIHFPTDYPFKP 64

Query:   274 PKVKFITRIFHPNVSRHGDL 293
             PKV F T+I+HPN++ +G +
Sbjct:    65 PKVAFTTKIYHPNINSNGSI 84

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P62837	UB2D2_HUMAN	6, ., 3, ., 2, ., 1, 9	0.5125	0.2040	0.5442	yes	N/A
P62839	UB2D2_RAT	6, ., 3, ., 2, ., 1, 9	0.5125	0.2040	0.5442	yes	N/A
P62838	UB2D2_MOUSE	6, ., 3, ., 2, ., 1, 9	0.5125	0.2040	0.5442	yes	N/A
Q1RMX2	UB2D2_BOVIN	6, ., 3, ., 2, ., 1, 9	0.5125	0.2040	0.5442	yes	N/A
Q06AA9	UB2D2_PIG	6, ., 3, ., 2, ., 1, 9	0.5125	0.2040	0.5442	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	392
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	2e-29
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	1e-26
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	7e-26
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	4e-23
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	4e-21
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	1e-19
pfam12937	47	pfam12937, F-box-like, F-box-like	7e-09
pfam00646	48	pfam00646, F-box, F-box domain	3e-05
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	8e-05

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  110 bits (277), Expect = 2e-29
 Identities = 42/80 (52%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL+KE  ++  DPP GI A P+D+    W  TI GP  +PYEGGVF L I  P  YP  P
Sbjct: 1   RLQKELKELLKDPPPGISAFPVDDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDYPFKP 60

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKVKF T+I+HPNV   G++
Sbjct: 61  PKVKFTTKIYHPNVDPSGEI 80

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  103 bits (259), Expect = 1e-26
 Identities = 41/80 (51%), Positives = 54/80 (67%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL+KE  D+K DPP GI A+P++     W  TI GP  +PYEGG+F L I  P  YP  P
Sbjct: 3   RLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKP 62

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV+F+T+I+HPNV  +G +
Sbjct: 63  PKVRFVTKIYHPNVDENGKI 82

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  101 bits (254), Expect = 7e-26
 Identities = 42/82 (51%), Positives = 51/82 (62%), Gaps = 1/82 (1%)

Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSY 269
              RL KE   ++ DPP GI A P+D+    HW ATI GP  +PYEGG+F L +  P  Y
Sbjct: 6   ALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDY 65

Query: 270 PMHPPKVKFITRIFHPNVSRHG 291
           P  PPKV+F T+IFHPNV   G
Sbjct: 66  PFKPPKVRFTTKIFHPNVDPSG 87

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score = 93.9 bits (234), Expect = 4e-23
 Identities = 42/81 (51%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKR-CHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL KE  +++ DPP G  A P+D++    W  TI GP  +PYEGGVF L I  P  YP  
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDENLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDYPFK 60

Query: 273 PPKVKFITRIFHPNVSRHGDL 293
           PPKVKFIT+I+HPNV   G++
Sbjct: 61  PPKVKFITKIYHPNVDSSGEI 81

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 88.7 bits (219), Expect = 4e-21
 Identities = 38/80 (47%), Positives = 51/80 (63%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE+ D+  DPP    A P D     W A+I GP  SPY GGVF+L I  P  YP  P
Sbjct: 5   RIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV+F T+I+HPN++ +G +
Sbjct: 65  PKVQFTTKIYHPNINSNGSI 84

Length = 147

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 84.9 bits (210), Expect = 1e-19
 Identities = 34/78 (43%), Positives = 51/78 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE  ++  DPP GI+A+P      H+   + GP  +PYEGG + L + +P  YPM P
Sbjct: 6   RIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEP 65

Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPN+ + G
Sbjct: 66  PKVRFLTKIYHPNIDKLG 83

Length = 152

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 51.0 bits (123), Expect = 7e-09
 Identities = 14/37 (37%), Positives = 22/37 (59%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
           +  LP E+L+ +FSYLD   L  ++  C RW  + +D
Sbjct: 1   LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASD 37

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 12/40 (30%), Positives = 21/40 (52%)

Query: 111 SSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADL 150
            S+  LP ++L+ + S LD   L  +S    RW +++  L
Sbjct: 1   FSLLDLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSL 40

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 39.3 bits (93), Expect = 8e-05
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 116 LPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
           LP E+L  + S LD   L  + +   +W ++I  
Sbjct: 1   LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDS 34

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	392
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417|consensus	148		100.0
KOG0419|consensus	152		100.0
KOG0425|consensus	171		100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0426|consensus	165		100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
KOG0421|consensus	175		100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
KOG0418|consensus	200		100.0
KOG0424|consensus	158		100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	99.97
KOG0427|consensus	161		99.96
KOG0422|consensus	153		99.95
KOG0420|consensus	184		99.94
KOG0423|consensus	223		99.93
KOG0416|consensus	189		99.93
KOG0894|consensus	244		99.92
KOG0428|consensus	314		99.81
KOG0895|consensus	1101		99.74
KOG0895|consensus	1101		99.61
KOG0429|consensus	258		99.56
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	99.42
KOG0896|consensus	138		99.35
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.91
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.9
KOG2997|consensus	366		98.51
KOG0281|consensus	499		98.39
KOG2120|consensus	419		98.31
KOG3926|consensus	332		97.76
KOG0274|consensus	537		97.68
KOG4341|consensus	483		97.67
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	97.65
KOG0897|consensus	122		97.53
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	97.12
PF06881	109	Elongin_A: RNA polymerase II transcription factor	96.81
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	95.48
KOG2391|consensus	365		94.37
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	93.44
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	93.33
PF13013	109	F-box-like_2: F-box-like domain	92.59
smart00591	107	RWD domain in RING finger and WD repeat containing	91.96
KOG3357|consensus	167		91.74
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	90.87

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-41  Score=302.81  Aligned_cols=141  Identities=39%  Similarity=0.688  Sum_probs=135.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      ..+.+||++|+++|++++++++++.+.++ |+++|+++|.||++||||||+|++.|.||++||++||+|+|.|+||||||
T Consensus         4 ~~a~~RL~kE~~~l~~~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HPNV   83 (153)
T COG5078           4 PSALKRLLKELKKLQKDPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHPNV   83 (153)
T ss_pred             hhHHHHHHHHHHHHhcCCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCCCc
Confidence            34999999999999999999999999888 99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      |.+|+|||+||+             ++|+|+++|++||+|  |+++|. .||.++|+|.+|               |++|
T Consensus        84 ~~~G~vCLdIL~-------------~~WsP~~~l~sILls--l~slL~-~PN~~~Pln~da---------------a~~~  132 (153)
T COG5078          84 DPSGNVCLDILK-------------DRWSPVYTLETILLS--LQSLLL-SPNPDSPLNTEA---------------ATLY  132 (153)
T ss_pred             CCCCCChhHHHh-------------CCCCccccHHHHHHH--HHHHHc-CCCCCCCCChHH---------------HHHH
Confidence            999999999998             899999999999998  999996 699999999877               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       133 ~~d~~~y~~~vr~  145 (153)
T COG5078         133 REDKEEYEKKVRE  145 (153)
T ss_pred             HhCHHHHHHHHHH
Confidence            9999999998874

>KOG0417|consensus

Probab=100.00  E-value=1.2e-41  Score=299.76  Aligned_cols=139  Identities=38%  Similarity=0.697  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH  290 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~  290 (392)
                      +.+||.||+++|++++++|+++.++++|+++|+++|.||.+||||||+|++.|.||++||++||+|+|.|+||||||+..
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPNI~~~   81 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPNIDSN   81 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCCcCcc
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846         291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD  370 (392)
Q Consensus       291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d  370 (392)
                      |+||+|||+             ++|+|+.+|.+||+|  |+++| ++|+.++|+.+++               |++|+.|
T Consensus        82 G~IclDILk-------------~~WsPAl~i~~Vlls--I~sLL-~~PnpddPL~~~i---------------a~~~k~d  130 (148)
T KOG0417|consen   82 GRICLDILK-------------DQWSPALTISKVLLS--ICSLL-SDPNPDDPLVPDI---------------AELYKTD  130 (148)
T ss_pred             ccchHHhhh-------------ccCChhhHHHHHHHH--HHHHh-cCCCCCccccHHH---------------HHHHHhh
Confidence            999999998             679999999999998  99988 6999999999877               9999999


Q ss_pred             HHHHHHHhcC
Q psy2846         371 QWRYFVLTRF  380 (392)
Q Consensus       371 ~~~y~~~~r~  380 (392)
                      +.+|+..+|.
T Consensus       131 ~~~~~~~ARe  140 (148)
T KOG0417|consen  131 RAKYERTARE  140 (148)
T ss_pred             HHHHHHHHHH
Confidence            9999999884

>KOG0419|consensus

Probab=100.00  E-value=1.2e-38  Score=274.66  Aligned_cols=142  Identities=33%  Similarity=0.619  Sum_probs=135.6

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN  286 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN  286 (392)
                      |+..|.+||++++++|+++++.||++.|.++|+++|.++|+||.+|||+||.|++.|.|+++||.+||.|+|++++||||
T Consensus         1 MstpArrrLmrDfkrlqedpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFHPN   80 (152)
T KOG0419|consen    1 MSTPARRRLMRDFKRLQEDPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFHPN   80 (152)
T ss_pred             CCchHHHHHHHHHHHhhcCCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccCCC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846         287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL  366 (392)
Q Consensus       287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l  366 (392)
                      ||.+|.+|||||+             .+|+|.+++.+||+|  ||+|| ++|+.++|+|.+|               |++
T Consensus        81 vya~G~iClDiLq-------------NrWsp~Ydva~ILts--iQslL-~dPn~~sPaN~eA---------------A~L  129 (152)
T KOG0419|consen   81 VYADGSICLDILQ-------------NRWSPTYDVASILTS--IQSLL-NDPNPNSPANSEA---------------ARL  129 (152)
T ss_pred             cCCCCcchHHHHh-------------cCCCCchhHHHHHHH--HHHHh-cCCCCCCcccHHH---------------HHH
Confidence            9999999999998             699999999999998  99988 5999999999776               999


Q ss_pred             HHhCHHHHHHHhc
Q psy2846         367 ISSDQWRYFVLTR  379 (392)
Q Consensus       367 ~~~d~~~y~~~~r  379 (392)
                      |++|+.+|...++
T Consensus       130 f~e~~rey~rrVk  142 (152)
T KOG0419|consen  130 FSENKREYERRVK  142 (152)
T ss_pred             HhhChHHHHHHHH
Confidence            9999999987665

>KOG0425|consensus

Probab=100.00  E-value=9.1e-38  Score=276.20  Aligned_cols=152  Identities=24%  Similarity=0.426  Sum_probs=144.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      .+..-|+++|+.|++.+..|+++...++ |+++|.+.|+||++|+|+||.|+..+.||.+||.+||+++|.|+|||||||
T Consensus         5 ~a~~ll~~qlk~L~~~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPNvy   84 (171)
T KOG0425|consen    5 QASLLLLKQLKELQEEPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPNVY   84 (171)
T ss_pred             hhHHHHHHHHHHHhcCCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCCcC
Confidence            3677889999999999999999998765 999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      ++|+||++||.+...+....+...|+|+|.+|+++||+|  |.+|| +.||..+|+|.+|               |+.|+
T Consensus        85 ~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllS--iIsmL-~~PN~~SPANVDA---------------a~~~R  146 (171)
T KOG0425|consen   85 EDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLS--IISML-NSPNDESPANVDA---------------AKEWR  146 (171)
T ss_pred             CCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHH--HHHHH-cCCCCCCccchHH---------------HHHHh
Confidence            999999999999998999999999999999999999999  99988 6999999999988               99999


Q ss_pred             hCHHHHHHHhc
Q psy2846         369 SDQWRYFVLTR  379 (392)
Q Consensus       369 ~d~~~y~~~~r  379 (392)
                      +|+++|+..+|
T Consensus       147 en~~EykkkV~  157 (171)
T KOG0425|consen  147 ENPEEYKKKVR  157 (171)
T ss_pred             hCHHHHHHHHH
Confidence            99999988765

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=9.2e-38  Score=279.99  Aligned_cols=139  Identities=32%  Similarity=0.613  Sum_probs=133.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH  290 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~  290 (392)
                      +.+||++|+++|++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPNV~~~   82 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKL   82 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeeceECCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846         291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD  370 (392)
Q Consensus       291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d  370 (392)
                      |.||+++|+             ++|+|++||++||++  |+++|. .|+.++|+|.++               |++|++|
T Consensus        83 G~iCl~iL~-------------~~W~p~~ti~~iL~~--i~~ll~-~P~~~~pln~~a---------------a~~~~~d  131 (152)
T PTZ00390         83 GRICLDILK-------------DKWSPALQIRTVLLS--IQALLS-APEPDDPLDTSV---------------ADHFKNN  131 (152)
T ss_pred             CeEECccCc-------------ccCCCCCcHHHHHHH--HHHHHh-CCCCCCchHHHH---------------HHHHHHC
Confidence            999999997             689999999999998  999994 999999999766               9999999


Q ss_pred             HHHHHHHhcC
Q psy2846         371 QWRYFVLTRF  380 (392)
Q Consensus       371 ~~~y~~~~r~  380 (392)
                      +++|+..+|.
T Consensus       132 ~~~f~~~a~~  141 (152)
T PTZ00390        132 RADAEKVARE  141 (152)
T ss_pred             HHHHHHHHHH
Confidence            9999999886

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=3.6e-37  Score=274.68  Aligned_cols=139  Identities=35%  Similarity=0.652  Sum_probs=132.6

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH  290 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~  290 (392)
                      +.+||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+.+
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPNv~~~   81 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPNINSN   81 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccceECCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846         291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD  370 (392)
Q Consensus       291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d  370 (392)
                      |.||+++|.             ++|+|++||++||.+  |+++|. +|+.++|+|.++               |++|++|
T Consensus        82 G~iCl~il~-------------~~W~p~~ti~~il~~--i~~ll~-~P~~~~p~n~~a---------------a~~~~~~  130 (147)
T PLN00172         82 GSICLDILR-------------DQWSPALTVSKVLLS--ISSLLT-DPNPDDPLVPEI---------------ARVFKEN  130 (147)
T ss_pred             CEEEcccCc-------------CCCCCcCcHHHHHHH--HHHHHh-CCCCCCchHHHH---------------HHHHHHC
Confidence            999999997             689999999999998  999884 999999999766               9999999


Q ss_pred             HHHHHHHhcC
Q psy2846         371 QWRYFVLTRF  380 (392)
Q Consensus       371 ~~~y~~~~r~  380 (392)
                      +++|+..+|.
T Consensus       131 ~~~f~~~a~~  140 (147)
T PLN00172        131 RSRYEATARE  140 (147)
T ss_pred             HHHHHHHHHH
Confidence            9999988875

>KOG0426|consensus

Probab=100.00  E-value=3e-37  Score=266.22  Aligned_cols=154  Identities=26%  Similarity=0.487  Sum_probs=147.1

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCC-CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN  286 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN  286 (392)
                      +..|+|||++||++|..++|+||.+.|.+ +|+++|.+.|.||++|+|+||.|-.++.||.+||.+||+++|...+||||
T Consensus         2 ~~~AlkRLm~EykqLt~~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~fHPN   81 (165)
T KOG0426|consen    2 AGTALKRLMAEYKQLTLNPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMFHPN   81 (165)
T ss_pred             chhHHHHHHHHHHHHccCCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccccCc
Confidence            46899999999999999999999999965 68999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846         287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL  366 (392)
Q Consensus       287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l  366 (392)
                      ||++|+||++||+....+.+.++...|+|+|.++++.||+|  +.++| +.||.++++|.+|               +++
T Consensus        82 iy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLS--V~SML-aEPNdESgANvdA---------------~~m  143 (165)
T KOG0426|consen   82 IYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLS--VVSML-AEPNDESGANVDA---------------CKM  143 (165)
T ss_pred             ccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHH--HHHHH-cCCCcccCcccHH---------------HHH
Confidence            99999999999999999999999999999999999999998  77877 6999999999988               999


Q ss_pred             HHhCHHHHHHHhc
Q psy2846         367 ISSDQWRYFVLTR  379 (392)
Q Consensus       367 ~~~d~~~y~~~~r  379 (392)
                      |++|+++|+.++|
T Consensus       144 WRe~R~ef~~i~~  156 (165)
T KOG0426|consen  144 WREDREEFEKIAK  156 (165)
T ss_pred             HHHhHHHHHHHHH
Confidence            9999999998876

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=2.4e-34  Score=252.59  Aligned_cols=137  Identities=37%  Similarity=0.726  Sum_probs=124.9

Q ss_pred             HHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCCc
Q psy2846         214 RLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD  292 (392)
Q Consensus       214 RL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G~  292 (392)
                      ||++|+++++++++.|+.+.+.++ |+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||+.+|.
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~~G~   80 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDENGR   80 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-TTSB
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCCCChheEEEEEeccCccceeccccccccccccccccccccccccccccccccccccc
Confidence            899999999999999999999886 9999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCHH
Q psy2846         293 LSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQW  372 (392)
Q Consensus       293 VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~~  372 (392)
                      ||+++|+            .+.|+|+++|.+||.+  |+++| .+|+.++|+|.++               |++|++|++
T Consensus        81 icl~~l~------------~~~W~p~~~i~~il~~--i~~ll-~~p~~~~~~n~~a---------------~~~~~~~~~  130 (140)
T PF00179_consen   81 ICLDILN------------PESWSPSYTIESILLS--IQSLL-SEPNPEDPLNEEA---------------AELYKNDRE  130 (140)
T ss_dssp             BGHGGGT------------TTTC-TTSHHHHHHHH--HHHHH-HSTCTTSTSSHHH---------------HHHHHHCHH
T ss_pred             chhhhhh------------cccCCcccccccHHHH--HHHHH-hCCCCCCcchHHH---------------HHHHHHCHH
Confidence            9999997            3569999999999998  99988 5899999999776               999999999


Q ss_pred             HHHHHhcC
Q psy2846         373 RYFVLTRF  380 (392)
Q Consensus       373 ~y~~~~r~  380 (392)
                      +|...+|.
T Consensus       131 ~f~~~~~~  138 (140)
T PF00179_consen  131 EFEKKARE  138 (140)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998874

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>KOG0421|consensus

Probab=100.00  E-value=9.8e-34  Score=247.48  Aligned_cols=140  Identities=33%  Similarity=0.552  Sum_probs=133.2

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP  285 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP  285 (392)
                      .......|||++||..|.....+||++.|.++|++.|.++|.||.+|+|+|-.|++.+.||.+||++||+|+|+|+.|||
T Consensus        25 ~~~~~V~KRLq~ELm~Lmms~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~HP  104 (175)
T KOG0421|consen   25 VDGHSVTKRLQSELMGLMMSNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFHP  104 (175)
T ss_pred             ccCchHHHHHHHHHHHHHhcCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccCC
Confidence            44677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846         286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD  365 (392)
Q Consensus       286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~  365 (392)
                      ||+..|.||||||+             +.|+..+.+++||+|  ||++| .+||.++|+|..|               |+
T Consensus       105 NVD~~GnIcLDILk-------------dKWSa~YdVrTILLS--iQSLL-GEPNn~SPLNaqA---------------Ae  153 (175)
T KOG0421|consen  105 NVDLSGNICLDILK-------------DKWSAVYDVRTILLS--IQSLL-GEPNNSSPLNAQA---------------AE  153 (175)
T ss_pred             CccccccchHHHHH-------------HHHHHHHhHHHHHHH--HHHHh-CCCCCCCcchhHH---------------HH
Confidence            99999999999998             899999999999999  99998 6999999999666               99


Q ss_pred             HHHhCHHHHHHH
Q psy2846         366 LISSDQWRYFVL  377 (392)
Q Consensus       366 l~~~d~~~y~~~  377 (392)
                      +|. |+++|+..
T Consensus       154 lW~-d~~eykk~  164 (175)
T KOG0421|consen  154 LWS-DQEEYKKY  164 (175)
T ss_pred             Hhc-CHHHHHHH
Confidence            999 99999864

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=7.6e-33  Score=243.51  Aligned_cols=138  Identities=37%  Similarity=0.726  Sum_probs=130.6

Q ss_pred             HHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCCc
Q psy2846         213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD  292 (392)
Q Consensus       213 kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G~  292 (392)
                      +||++|++++++++++|+.+.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|.
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~~~G~   81 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVDENGK   81 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCCCCCC
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCHH
Q psy2846         293 LSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQW  372 (392)
Q Consensus       293 VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~~  372 (392)
                      ||+++|.            .+.|+|+++|++||.+  |+++|. +|+.++|+|.+|               |++|++|++
T Consensus        82 icl~~l~------------~~~W~p~~~l~~il~~--i~~~l~-~p~~~~~~n~~a---------------a~~~~~~~~  131 (141)
T cd00195          82 ICLSILK------------THGWSPAYTLRTVLLS--LQSLLN-EPNPSDPLNAEA---------------AKLYKENRE  131 (141)
T ss_pred             CchhhcC------------CCCcCCcCcHHHHHHH--HHHHHh-CCCCCCchhHHH---------------HHHHHHCHH
Confidence            9999997            2359999999999998  999997 999999999766               999999999


Q ss_pred             HHHHHhcC
Q psy2846         373 RYFVLTRF  380 (392)
Q Consensus       373 ~y~~~~r~  380 (392)
                      +|+..+|.
T Consensus       132 ~f~~~~~~  139 (141)
T cd00195         132 EFKKKARE  139 (141)
T ss_pred             HHHHHHHH
Confidence            99988763

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>KOG0418|consensus

Probab=100.00  E-value=2.9e-33  Score=254.14  Aligned_cols=139  Identities=34%  Similarity=0.622  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHhhcCC---CCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         211 RHFRLRKEYNDIKLDP---PDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~---p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      +.+||++|.+++.+++   -.||.+...++++.+.++.|.||+|||||||.|.++|.+|++||++||+|+|.|+||||||
T Consensus         4 ~~~ri~~e~k~v~~~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwHPnV   83 (200)
T KOG0418|consen    4 AFKRINREQKEVLDDPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWHPNV   83 (200)
T ss_pred             HHHHHHHHHHHhccChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeecCCC
Confidence            8899999999999998   6799999999999999999999999999999999999999999999999999999999999


Q ss_pred             c-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846         288 S-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL  366 (392)
Q Consensus       288 ~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l  366 (392)
                      + .+|.||||||.             +.|.+++||+++|+|  ||++| +.|+.++|.+...               |+.
T Consensus        84 Ss~tGaICLDilk-------------d~Wa~slTlrtvLis--lQalL-~~pEp~dPqDavv---------------a~q  132 (200)
T KOG0418|consen   84 SSQTGAICLDILK-------------DQWAASLTLRTVLIS--LQALL-CAPEPKDPQDAVV---------------AEQ  132 (200)
T ss_pred             Ccccccchhhhhh-------------cccchhhhHHHHHHH--HHHHH-cCCCCCChHHHHH---------------HHH
Confidence            8 59999999997             799999999999998  99999 5999999999666               999


Q ss_pred             HHhCHHHHHHHhcC
Q psy2846         367 ISSDQWRYFVLTRF  380 (392)
Q Consensus       367 ~~~d~~~y~~~~r~  380 (392)
                      |.+|++.|.+-+||
T Consensus       133 y~~n~~~F~~TAr~  146 (200)
T KOG0418|consen  133 YVDNYEMFYKTARY  146 (200)
T ss_pred             HhhhHHHHHHHHHH
Confidence            99999999999887

>KOG0424|consensus

Probab=100.00  E-value=2e-32  Score=239.33  Aligned_cols=144  Identities=28%  Similarity=0.504  Sum_probs=132.7

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCC-----CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD-----NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI  282 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-----~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I  282 (392)
                      ++.++.||+.|-+.+.++.|.|+++.|..     .|++.|++.|.|+++|+||||.|.+.+.||++||.+||+++|.+++
T Consensus         2 s~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~~pl   81 (158)
T KOG0424|consen    2 SGIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFKPPL   81 (158)
T ss_pred             cchHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccCCCC
Confidence            45679999999999999999999999864     3799999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHH
Q psy2846         283 FHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTI  362 (392)
Q Consensus       283 fHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~  362 (392)
                      ||||||++|.|||+||+.+           .+|+|+.||.+||++  ||.|| ..||..+|++.+|              
T Consensus        82 ~HPNVypsgtVcLsiL~e~-----------~~W~paitikqiL~g--IqdLL-~~Pn~~~pAq~eA--------------  133 (158)
T KOG0424|consen   82 FHPNVYPSGTVCLSILNEE-----------KDWRPAITIKQILLG--IQDLL-DTPNITSPAQTEA--------------  133 (158)
T ss_pred             cCCCcCCCCcEehhhhccc-----------cCCCchhhHHHHHHH--HHHHh-cCCCCCCchhhHH--------------
Confidence            9999999999999999832           459999999999998  99998 6999999999777              


Q ss_pred             HHHHHHhCHHHHHHHhcC
Q psy2846         363 IADLISSDQWRYFVLTRF  380 (392)
Q Consensus       363 ~A~l~~~d~~~y~~~~r~  380 (392)
                       -..|..|+.+|+..+|-
T Consensus       134 -~~~~~~~r~eYekrvr~  150 (158)
T KOG0424|consen  134 -YTIYCQDRAEYEKRVRA  150 (158)
T ss_pred             -HHHHhhCHHHHHHHHHH
Confidence             78899999999987763

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=99.97  E-value=1.4e-31  Score=236.47  Aligned_cols=138  Identities=39%  Similarity=0.713  Sum_probs=129.8

Q ss_pred             HHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCC
Q psy2846         213 FRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHG  291 (392)
Q Consensus       213 kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G  291 (392)
                      +||++|++++++++++|+.+.+.++ |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.+++|||||+++|
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~~~G   80 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVDSSG   80 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeECCCC
Confidence            5999999999999999999988775 999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCH
Q psy2846         292 DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQ  371 (392)
Q Consensus       292 ~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~  371 (392)
                      .||+++|.            .++|+|+++|++||.+  |+++|. +|+.++|+|.+|               |++|++|+
T Consensus        81 ~icl~~l~------------~~~W~p~~~l~~il~~--i~~~l~-~p~~~~~~n~ea---------------a~~~~~~~  130 (145)
T smart00212       81 EICLDILK------------QEKWSPATTLETVLLS--IQSLLS-EPNPDSPLNADA---------------ATLYKKNR  130 (145)
T ss_pred             CEehhhcC------------CCCCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH---------------HHHHHHCH
Confidence            99999986            3689999999999997  999885 799999999776               99999999


Q ss_pred             HHHHHHhcC
Q psy2846         372 WRYFVLTRF  380 (392)
Q Consensus       372 ~~y~~~~r~  380 (392)
                      +.|+..+|.
T Consensus       131 ~~f~~~~~~  139 (145)
T smart00212      131 EEFKKKARE  139 (145)
T ss_pred             HHHHHHHHH
Confidence            999988874

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0427|consensus

Probab=99.96  E-value=1.3e-28  Score=212.49  Aligned_cols=148  Identities=22%  Similarity=0.449  Sum_probs=135.3

Q ss_pred             cCCCCCcCccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcC
Q psy2846         197 IRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKV  276 (392)
Q Consensus       197 ~~~s~~s~~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V  276 (392)
                      .+.+.++....+..+.+||+|||.+++.++|.|+... ..+|+.+|.+-+.|.+||.|+|..|.+.+.||+.||++.|+|
T Consensus         2 tss~~~~rk~ls~~at~RLqKEl~e~q~~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqV   80 (161)
T KOG0427|consen    2 TSSSAPSRKALSKIATNRLQKELSEWQNNPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQV   80 (161)
T ss_pred             CCcccchHHHHHHHHHHHHHHHHHHHhcCCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeE
Confidence            3344344567788999999999999999999999887 778999999999999999999999999999999999999999


Q ss_pred             cccccc-ccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhh----
Q psy2846         277 KFITRI-FHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCS----  351 (392)
Q Consensus       277 ~F~T~I-fHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~----  351 (392)
                      .|..++ .||+||.+|.|||+||.             ++|+|++++.+|.+|  |.++|.+.+....|.+++-|.+    
T Consensus        81 mF~~~~P~HPHiYSNGHICL~iL~-------------d~WsPAmsv~SvClS--IlSMLSSs~eKqrP~Dn~~Yvk~C~~  145 (161)
T KOG0427|consen   81 MFVGPAPLHPHIYSNGHICLDILY-------------DSWSPAMSVQSVCLS--ILSMLSSSKEKQRPTDNDRYVKNCKN  145 (161)
T ss_pred             EEecCCCCCCceecCCeEEEEeec-------------ccCCcchhhHHHHHH--HHHHHccCccccCCCccchhhhhccC
Confidence            999986 79999999999999997             899999999999998  9999999999999999999984    


Q ss_pred             -hhhhhhhhH
Q psy2846         352 -VSRACTRWF  360 (392)
Q Consensus       352 -~~~~~~~w~  360 (392)
                       .+.+.||||
T Consensus       146 grsPk~TrWw  155 (161)
T KOG0427|consen  146 GRSPKETRWW  155 (161)
T ss_pred             CCCcccceee
Confidence             455788887

>KOG0422|consensus

Probab=99.95  E-value=1.5e-28  Score=214.00  Aligned_cols=138  Identities=29%  Similarity=0.482  Sum_probs=124.8

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcee-eeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQA-QPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v-~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      .+.+||++||.+|++++...+.- ..+++++..|++.|. |++.||..|.|+++|.||.+|||+||+|+|.|+||||||+
T Consensus         2 ~a~~Rl~kEL~dl~~~~~~~~rn~~~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpNVD   80 (153)
T KOG0422|consen    2 AAPRRLRKELADLQKNKMKFFRNIEVDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPNVD   80 (153)
T ss_pred             chhHHHHHHHHHHHhccHHHHhhhhcccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCCCC
Confidence            35789999999999998876543 345679999999999 8999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      +.|.||+.||.            .|+|.|++++++||.+  +..++ .+|+.+.|+..+.               |..|.
T Consensus        81 e~gqvClPiis------------~EnWkP~T~teqVlqa--Li~li-N~P~pe~plr~dl---------------A~ey~  130 (153)
T KOG0422|consen   81 EKGQVCLPIIS------------AENWKPATRTEQVLQA--LIALI-NDPEPEHPLRIDL---------------AEEYI  130 (153)
T ss_pred             CCCceeeeeee------------cccccCcccHHHHHHH--HHHHh-cCCCccccchhhH---------------HHHHH
Confidence            99999999998            6899999999999997  88877 6999999999666               99999


Q ss_pred             hCHHHHHHHh
Q psy2846         369 SDQWRYFVLT  378 (392)
Q Consensus       369 ~d~~~y~~~~  378 (392)
                      +|+..|...+
T Consensus       131 ~d~~kF~K~A  140 (153)
T KOG0422|consen  131 KDPKKFVKNA  140 (153)
T ss_pred             HCHHHHHHhH
Confidence            9999987654

>KOG0420|consensus

Probab=99.94  E-value=6.5e-27  Score=210.12  Aligned_cols=141  Identities=25%  Similarity=0.447  Sum_probs=120.1

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceee--eCCCCc--cEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQ--PLDNKR--CHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR  281 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~--p~~~dl--~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~  281 (392)
                      ...+.+.-||++|+.++.  .|++++..  ...+++  .+++++|. |+++.|+||.|.|.+.+|+.||+.||+|+|+|+
T Consensus        24 ~~~s~a~lrl~~di~eln--Lp~t~~~s~~~~~~d~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltk  100 (184)
T KOG0420|consen   24 KKVSAALLRLKKDILELN--LPPTCSLSFPDSPDDLNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTK  100 (184)
T ss_pred             ccccHHHHHHHhhhhhcc--CCCccccccccCCcccccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeec
Confidence            445667777777776665  55555432  222333  35999999 999999999999999999999999999999999


Q ss_pred             cccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHH
Q psy2846         282 IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFT  361 (392)
Q Consensus       282 IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~  361 (392)
                      ||||||+.+|.|||+||.             ++|+|+.+|.+|+.+  ++.++ .+|+.++|+|-+|             
T Consensus       101 V~HPNId~~GnVCLnILR-------------edW~P~lnL~sIi~G--L~~LF-~epn~eDpLN~eA-------------  151 (184)
T KOG0420|consen  101 VYHPNIDLDGNVCLNILR-------------EDWRPVLNLNSIIYG--LQFLF-LEPNPEDPLNKEA-------------  151 (184)
T ss_pred             cccCCcCCcchHHHHHHH-------------hcCccccchHHHHHH--HHHHh-ccCCCcccccHHH-------------
Confidence            999999999999999998             789999999999998  88877 5999999999666             


Q ss_pred             HHHHHHHhCHHHHHHHhcC
Q psy2846         362 IIADLISSDQWRYFVLTRF  380 (392)
Q Consensus       362 ~~A~l~~~d~~~y~~~~r~  380 (392)
                        |+++++|++.|+-.+|-
T Consensus       152 --A~~l~~n~e~F~~~Vr~  168 (184)
T KOG0420|consen  152 --AAVLKSNREGFENNVRR  168 (184)
T ss_pred             --HHHHHhCHHHHHHHHHH
Confidence              99999999999988774

>KOG0423|consensus

Probab=99.93  E-value=8.6e-27  Score=209.40  Aligned_cols=145  Identities=26%  Similarity=0.489  Sum_probs=136.0

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      .....-.++.+.+|++.|..+||+||.+.+.++|+...++.|.||.||||++|.|++.+.+..|||++||+-.|+|+|||
T Consensus         5 enlpp~vik~~~kEl~~l~~~PPdGIKV~~NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFH   84 (223)
T KOG0423|consen    5 ENLPPNVIKQLAKELKSLDESPPDGIKVVVNEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFH   84 (223)
T ss_pred             cCCChHHHHHHHHHHHhcccCCCCceEEecChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeecc
Confidence            35566788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846         285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA  364 (392)
Q Consensus       285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A  364 (392)
                      |||..+|.||.+.|.             .+|+|...|..||+.  |+.+|+ .|+.++.+|.++               .
T Consensus        85 PNVaaNGEICVNtLK-------------kDW~p~LGirHvLlt--ikCLLI-~PnPESALNEeA---------------G  133 (223)
T KOG0423|consen   85 PNVAANGEICVNTLK-------------KDWNPSLGIRHVLLT--IKCLLI-EPNPESALNEEA---------------G  133 (223)
T ss_pred             CCcccCceehhhhhh-------------cccCcccchhhHhhh--hheeee-cCChHHHHhHHH---------------H
Confidence            999999999999997             789999999999996  888886 999999999766               9


Q ss_pred             HHHHhCHHHHHHHhcC
Q psy2846         365 DLISSDQWRYFVLTRF  380 (392)
Q Consensus       365 ~l~~~d~~~y~~~~r~  380 (392)
                      +++.+++++|...+|.
T Consensus       134 kmLLEnYdeYa~rARl  149 (223)
T KOG0423|consen  134 KMLLENYDEYARRARL  149 (223)
T ss_pred             HHHHHhHHHHHHHHHH
Confidence            9999999999998885

>KOG0416|consensus

Probab=99.93  E-value=7.3e-26  Score=203.03  Aligned_cols=137  Identities=24%  Similarity=0.467  Sum_probs=123.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc-C
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS-R  289 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~-~  289 (392)
                      ..|||..++..|..+   +..+...++++.+++|.+.||.+|||+||+++++|.+|++||++.|.|.|.++||||||+ .
T Consensus         4 ~~rRid~Dv~KL~~s---~yeV~~ind~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~   80 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLMS---DYEVTIINDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEA   80 (189)
T ss_pred             cccchhhHHHHHHhc---CCeEEEecCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhc
Confidence            357999999888764   457777889999999999999999999999999999999999999999999999999999 5


Q ss_pred             CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846         290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS  369 (392)
Q Consensus       290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~  369 (392)
                      +|.|||+.|+             ..|+|.+.+..|+.+ ++=+|| +.||..+|+|.+|               |.+|..
T Consensus        81 SGsVCLDViN-------------QtWSp~yDL~NIfet-fLPQLL-~YPNp~DPLN~eA---------------Aal~l~  130 (189)
T KOG0416|consen   81 SGSVCLDVIN-------------QTWSPLYDLVNIFET-FLPQLL-RYPNPSDPLNGEA---------------AALYLR  130 (189)
T ss_pred             cCccHHHHHh-------------hhhhHHHHHHHHHHH-HhHHHh-cCCCCCCCcccHH---------------HHHHhc
Confidence            9999999998             689999999999987 555555 7999999999877               999999


Q ss_pred             CHHHHHHHhcC
Q psy2846         370 DQWRYFVLTRF  380 (392)
Q Consensus       370 d~~~y~~~~r~  380 (392)
                      ++++|+..+|-
T Consensus       131 ~~~~Y~~~v~e  141 (189)
T KOG0416|consen  131 DPEEYEEKVKE  141 (189)
T ss_pred             CHHHHHHHHHH
Confidence            99999987764

>KOG0894|consensus

Probab=99.92  E-value=1.8e-24  Score=200.53  Aligned_cols=150  Identities=22%  Similarity=0.357  Sum_probs=120.0

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc--ccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR--IFH  284 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~--IfH  284 (392)
                      ++..+.|||+|||+.|+++|.++|.+.|..+|+.+||.+|.||++|||+||.|+.+|.||.+||++||-|+++||  .|-
T Consensus         2 a~k~a~kRl~keY~~l~k~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNGRFk   81 (244)
T KOG0894|consen    2 ASKAAVKRLQKEYRALCKDPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNGRFK   81 (244)
T ss_pred             cchHHHHHHHHHHHHHHhCCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCCcee
Confidence            347899999999999999999999999999999999999999999999999999999999999999999999995  444


Q ss_pred             ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhh------------hh
Q psy2846         285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLC------------SV  352 (392)
Q Consensus       285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~------------~~  352 (392)
                      +|    -++||+|-+          .|++.|+|.+++.+||.+  +.++|..+--..--.+-..+.            =.
T Consensus        82 tn----tRLCLSiSD----------fHPdsWNP~WsVStILtG--LlSFM~e~~pTtGSI~tS~~~kr~lA~~SlaFN~k  145 (244)
T KOG0894|consen   82 TN----TRLCLSISD----------FHPDSWNPGWSVSTILTG--LLSFMTEDSPTTGSIETSDQDKRMLAKSSLAFNLK  145 (244)
T ss_pred             cC----ceEEEeccc----------cCcCcCCCcccHHHHHHH--HHHHHhcCCCccCcccccHHHHHHHHHhhhhhccC
Confidence            44    789999765          889999999999999998  999997332222222222222            11


Q ss_pred             hhhhhhhHHHHHHHHHhCHH
Q psy2846         353 SRACTRWFTIIADLISSDQW  372 (392)
Q Consensus       353 ~~~~~~w~~~~A~l~~~d~~  372 (392)
                      ..+.+..|.++-+.|....-
T Consensus       146 n~~F~~lFPE~Vee~nq~~~  165 (244)
T KOG0894|consen  146 NPKFCELFPEVVEEYNQEQL  165 (244)
T ss_pred             ChHHHHHhHHHHHHHHHHHH
Confidence            22345666777666655433

>KOG0428|consensus

Probab=99.81  E-value=5e-20  Score=173.78  Aligned_cols=137  Identities=27%  Similarity=0.486  Sum_probs=114.5

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN  286 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN  286 (392)
                      -.+.+.|||++|.++|+ +|.+.+.+.|.++|+++|+++|.||.+|-|+||+|+.+|.||.+||++||.+-.+|    ||
T Consensus         8 ~KnpaVkRlmkEa~El~-~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLT----pN   82 (314)
T KOG0428|consen    8 LKNPAVKRLMKEAAELK-DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLT----PN   82 (314)
T ss_pred             ccCHHHHHHHHHHHHhc-CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEc----CC
Confidence            35789999999999999 78888899999999999999999999999999999999999999999999999988    55


Q ss_pred             cc--CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhh-----hhhhhhhhh
Q psy2846         287 VS--RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLC-----SVSRACTRW  359 (392)
Q Consensus       287 V~--~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~-----~~~~~~~~w  359 (392)
                      --  -+-+|||+|-+          +|+|.|.|+++|++.|+.  |+.+|-+.|+-  .+-...|+     .++++...|
T Consensus        83 GRFE~nkKiCLSISg----------yHPEtWqPSWSiRTALlA--lIgFmPt~p~G--AlGSlDYpp~ERr~LAkkS~e~  148 (314)
T KOG0428|consen   83 GRFEVNKKICLSISG----------YHPETWQPSWSIRTALLA--LIGFMPTKPEG--ALGSLDYPPEERRALAKKSQEF  148 (314)
T ss_pred             CceeeCceEEEEecC----------CCccccCcchhHHHHHHH--HHccccCCCCC--ccccCcCCHHHHHHHHHhhccc
Confidence            42  35689999754          889999999999999997  99999777764  33333343     555555555


Q ss_pred             HHH
Q psy2846         360 FTI  362 (392)
Q Consensus       360 ~~~  362 (392)
                      -.+
T Consensus       149 ~ck  151 (314)
T KOG0428|consen  149 CCK  151 (314)
T ss_pred             Ccc
Confidence            444

>KOG0895|consensus

Probab=99.74  E-value=3.9e-18  Score=186.22  Aligned_cols=126  Identities=21%  Similarity=0.456  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc--cccccc
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR--IFHPNV  287 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~--IfHPNV  287 (392)
                      .-.+..+.|++.|..+.|.||.++..++.|....+.|.||.+|||++|.|.|+|.||.+||..||.|.+.+.  .++||.
T Consensus       851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npnl  930 (1101)
T KOG0895|consen  851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPNL  930 (1101)
T ss_pred             HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCccc
Confidence            445556667888888999999999999999999999999999999999999999999999999999999886  689999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHh-cCCCCCCC
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQ-RRPRVRFP  343 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~-~~P~~~~P  343 (392)
                      |.+|+||+++|+      +|.|...|.|+|+.+|.+||+|  ||+|+. .+|..+.|
T Consensus       931 y~~g~vc~s~l~------tw~g~~~e~w~~~s~~lq~l~s--~q~l~l~~~py~ne~  979 (1101)
T KOG0895|consen  931 YEDGKVCLSLLN------TWHGRGNEVWNPSSSILQVLVS--IQGLVLNEEPYFNEA  979 (1101)
T ss_pred             ccccceehhhhc------cccCCCccccCcchhHHHHHHH--hhhhhcccccccCcc
Confidence            999999999999      7788889999999999999999  999876 44544433

>KOG0895|consensus

Probab=99.61  E-value=1.8e-15  Score=165.61  Aligned_cols=128  Identities=27%  Similarity=0.454  Sum_probs=116.9

Q ss_pred             CcCccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846         202 SSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR  281 (392)
Q Consensus       202 ~s~~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~  281 (392)
                      .+...-+....+|+++|++.+.++.|+||.+++.+.++...+++|.||.+|||++|+|.|.|.||..||..||.|+++|.
T Consensus       274 ~~~k~hs~~~skrv~ke~~llskdlpEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~  353 (1101)
T KOG0895|consen  274 KSSKPHSKNWSKKVAKELKLLSKDLPEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTG  353 (1101)
T ss_pred             CCCCccchhhHHHHHHHhhhhcccCCCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeec
Confidence            33345677889999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             ---cccccccCCCceeccCCCCcccccCCCCcCCCCCccc-ccHHHHHhHHHHHHHHhcC
Q psy2846         282 ---IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRR-HRLYSILFSNSIRDHIQRR  337 (392)
Q Consensus       282 ---IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~-~sI~sILlS~~IqslL~~~  337 (392)
                         .+.||.|.+|+||+++|.      +|.+...+.|+|. .+|.++|.|  ||.++..+
T Consensus       354 ~~~R~nPNlYn~GKVcLslLg------Twtg~~~e~wtp~~~sl~qvL~s--IQ~Li~~e  405 (1101)
T KOG0895|consen  354 GGVRLNPNLYNDGKVCLSLLG------TWTGSRREKWTPNGSSLLQVLES--IQGLILNE  405 (1101)
T ss_pred             cceeecCCcccCceEEeeeee------ecccccccCCCccccchhhhhhh--hhhhhccc
Confidence               689999999999999998      5555567899999 889999998  99999644

>KOG0429|consensus

Probab=99.56  E-value=2.2e-14  Score=134.03  Aligned_cols=136  Identities=24%  Similarity=0.399  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCC--CCcCcccccccccccc
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH--PPKVKFITRIFHPNVS  288 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~--PP~V~F~T~IfHPNV~  288 (392)
                      .-..|..|+..+.+.+.+||++.|.-.+-+.|.++|++ ..+.|.||+|+|+|.+|++||..  -|+|.|.+.+|||.|.
T Consensus        20 qey~llAEf~lV~~ekL~gIyviPSyan~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP~ic   98 (258)
T KOG0429|consen   20 QEYALLAEFVLVCREKLDGIYVIPSYANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHPLIC   98 (258)
T ss_pred             HHHHHHHHHHHHHhccCCceEEcccccccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeeccccccccC
Confidence            34568889999999999999999999999999999995 67899999999999999999954  8999999999999999


Q ss_pred             C-CCceeccCCCCcccccCCCCcCCCCCccccc-HHHHHhHHHHHHHHhcCCCCCCC-C-CchhhhhhhhhhhhhHHHHH
Q psy2846         289 R-HGDLSHAPAQGEIYHSNISSECAETWGRRHR-LYSILFSNSIRDHIQRRPRVRFP-L-DDLSLCSVSRACTRWFTIIA  364 (392)
Q Consensus       289 ~-~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~s-I~sILlS~~IqslL~~~P~~~~P-l-n~~a~~~~~~~~~~w~~~~A  364 (392)
                      + ++.+|+.--             ...|+-... |.+||..  +|..+. +|+.+.+ + |++               +|
T Consensus        99 p~skeLdl~ra-------------f~eWRk~ehhiwqvL~y--lqriF~-dpd~si~kl~N~e---------------Aa  147 (258)
T KOG0429|consen   99 PKSKELDLNRA-------------FPEWRKEEHHIWQVLVY--LQRIFY-DPDVSIDKLINPE---------------AA  147 (258)
T ss_pred             CCccceeHhhh-------------hhhhhccccHHHHHHHH--HHHHhc-CcccchhhhcChH---------------HH
Confidence            5 899999832             345877655 9999996  999885 8877766 4 544               49


Q ss_pred             HHHHhCHHHHHHHh
Q psy2846         365 DLISSDQWRYFVLT  378 (392)
Q Consensus       365 ~l~~~d~~~y~~~~  378 (392)
                      .+|++++++|...+
T Consensus       148 ~l~~k~r~ef~~rv  161 (258)
T KOG0429|consen  148 VLYKKHRDEFRERV  161 (258)
T ss_pred             HHHHHhHHHHHHHH
Confidence            99999999998764

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=99.42  E-value=1.1e-13  Score=100.13  Aligned_cols=47  Identities=45%  Similarity=0.809  Sum_probs=41.0

Q ss_pred             cCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHh
Q psy2846         113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLT  162 (392)
Q Consensus       113 ~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~  162 (392)
                      +..||+||+.+||+|||+.||+++++|||+|++++.++   .+|++++.+
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~---~lW~~~~~r   47 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDN---SLWRRLCLR   47 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCC---CHHHHHC--
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCCh---hhhhhhccC
Confidence            46799999999999999999999999999999999999   999998753

>KOG0896|consensus

Probab=99.35  E-value=1.2e-12  Score=114.09  Aligned_cols=126  Identities=25%  Similarity=0.400  Sum_probs=102.7

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCc-eeeeCC-CC--ccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGI-QAQPLD-NK--RCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF  283 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI-~v~p~~-~d--l~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If  283 (392)
                      ...++.||.+|+..-++...+|. +....+ +|  +..|..+|.||+.|+||+.+|.++|.+..+||..||.|+|.++|-
T Consensus         3 ~vPrnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkin   82 (138)
T KOG0896|consen    3 KVPRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKIN   82 (138)
T ss_pred             ccccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEee
Confidence            45678999999999988766554 443333 23  678999999999999999999999999999999999999999999


Q ss_pred             ccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCc
Q psy2846         284 HPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDD  346 (392)
Q Consensus       284 HPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~  346 (392)
                      -+.|+ .+|.|.-..++           ..++|+-.+++..||..  ++.+|++..|...|.-.
T Consensus        83 m~gvn~~~g~Vd~~~i~-----------~L~~W~~~y~~~~vl~~--lr~~m~~~eN~kl~qp~  133 (138)
T KOG0896|consen   83 MNGVNSSNGVVDPRDIT-----------VLARWQRSYSIKMVLGQ--LRKEMMSKENRKLPQPP  133 (138)
T ss_pred             ecccccCCCccCccccc-----------hhhcccccchhhHHHHh--hhHHHHHHHhhcccCCC
Confidence            88888 47777765443           34799999999999996  88888777776655443

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.91  E-value=1.8e-09  Score=74.51  Aligned_cols=40  Identities=30%  Similarity=0.542  Sum_probs=38.4

Q ss_pred             CCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHH
Q psy2846         116 LPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRY  158 (392)
Q Consensus       116 LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~  158 (392)
                      ||.|++.+||+||+..|++++++|||+|+.++.++   .+|+.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~---~~~~~   40 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSH---DFWFK   40 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCh---hhhhc
Confidence            79999999999999999999999999999999999   99975

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.90  E-value=6.1e-10  Score=80.13  Aligned_cols=47  Identities=28%  Similarity=0.602  Sum_probs=40.1

Q ss_pred             ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHH
Q psy2846         112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVL  161 (392)
Q Consensus       112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~  161 (392)
                      .+..||.|++.+||+||+..|++++++|||+|++++.+.   .+|+..++
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~---~~~~~~~r   48 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSP---RLWKKIIR   48 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTH---HHHHHHH-
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCC---CccHHHhC
Confidence            355799999999999999999999999999999999999   99998874

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG2997|consensus

Probab=98.51  E-value=7.6e-08  Score=95.41  Aligned_cols=68  Identities=29%  Similarity=0.542  Sum_probs=59.4

Q ss_pred             ccCCCCHHHHHHHhc-----cCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC----Cc----cCccccchHH
Q psy2846         112 SIHSLPPEVLITVFS-----YLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL----FN----SNITVSNWYS  178 (392)
Q Consensus       112 ~~~~LP~eil~~IFs-----yLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~----~~----~~~~~~~Wkk  178 (392)
                      .|..||+|||+.||.     -||..+|.+||+|||.|+..+.++   ++||..|.+.|+.    ..    .....++||+
T Consensus       106 ~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~---~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~  182 (366)
T KOG2997|consen  106 SISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDP---ELWRLACLKVWQRSCIKLNPKILQSKYYTSWRE  182 (366)
T ss_pred             hhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcCh---HHHHHHHHHHHHHhhhccchhhhhhHHHhHHHH
Confidence            467899999999996     578899999999999999999999   9999999999985    11    2446789999


Q ss_pred             HHHh
Q psy2846         179 VYAK  182 (392)
Q Consensus       179 ~Y~k  182 (392)
                      |+.+
T Consensus       183 Mfl~  186 (366)
T KOG2997|consen  183 MFLE  186 (366)
T ss_pred             HHhh
Confidence            9987

>KOG0281|consensus

Probab=98.39  E-value=2.3e-07  Score=92.88  Aligned_cols=51  Identities=29%  Similarity=0.638  Sum_probs=48.6

Q ss_pred             CCccCCCC----HHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhh
Q psy2846         110 GSSIHSLP----PEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTR  163 (392)
Q Consensus       110 ~~~~~~LP----~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~  163 (392)
                      +||++.||    ++|.+.||||||..|||.|-+|||+|++++.++   .+||+++.+.
T Consensus        72 rDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg---~~WKkLie~~  126 (499)
T KOG0281|consen   72 RDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDG---MLWKKLIERM  126 (499)
T ss_pred             HHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccc---hHHHHHHHHh
Confidence            34999999    999999999999999999999999999999999   9999999885

>KOG2120|consensus

Probab=98.31  E-value=5.6e-07  Score=89.37  Aligned_cols=47  Identities=36%  Similarity=0.641  Sum_probs=43.5

Q ss_pred             ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHH
Q psy2846         112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVL  161 (392)
Q Consensus       112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~  161 (392)
                      ..++||+||++.|||.|-.++|++++.||||||+++.|+   .+|..+=.
T Consensus        97 ~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de---~lW~~lDl  143 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDE---SLWQTLDL  143 (419)
T ss_pred             CcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccc---cceeeecc
Confidence            467999999999999999999999999999999999999   99986543

>KOG3926|consensus

Probab=97.76  E-value=4.9e-05  Score=74.30  Aligned_cols=85  Identities=20%  Similarity=0.353  Sum_probs=71.0

Q ss_pred             cccCCCCCCccCCCCHHHHHHHhccC-CHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC-------CccCcccc
Q psy2846         103 LTSQNTGGSSIHSLPPEVLITVFSYL-DDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL-------FNSNITVS  174 (392)
Q Consensus       103 ~~~~~~~~~~~~~LP~eil~~IFsyL-d~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~-------~~~~~~~~  174 (392)
                      .+.++..+..+..||.|+++.|...| |..||..++||--.-+.++++.   .+||++|.-.|.-       .-...+..
T Consensus       192 i~~~~~~~ltl~dLP~e~vl~Il~rlsDh~dL~s~aqa~etl~~l~~e~---~iWkkLcqfHF~erQi~~~l~l~k~~q~  268 (332)
T KOG3926|consen  192 ITEPDPAGLTLHDLPLECVLNILLRLSDHRDLESLAQAWETLAKLSEER---RIWKKLCQFHFNERQIHTILILSKKGQK  268 (332)
T ss_pred             ccCCCcCCCCcccchHHHHHHHHHHccCcchHHHHHHhhHHHHHHHHHH---HHHHHHHHHHhhHHHHHHhhhhccccch
Confidence            33444456788899999999998888 8999999999999999999988   9999999977653       44556778


Q ss_pred             chHHHHHhhhccCCcc
Q psy2846         175 NWYSVYAKLVESTPCY  190 (392)
Q Consensus       175 ~Wkk~Y~kLves~pc~  190 (392)
                      +||.||.+|...-||+
T Consensus       269 dWkqmyf~L~r~yg~k  284 (332)
T KOG3926|consen  269 DWKQMYFQLRRTYGVK  284 (332)
T ss_pred             hHHHHHHHHHHhcChH
Confidence            9999999999887764

>KOG0274|consensus

Probab=97.68  E-value=2.6e-05  Score=83.24  Aligned_cols=56  Identities=21%  Similarity=0.440  Sum_probs=49.7

Q ss_pred             CCCCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC
Q psy2846         108 TGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL  166 (392)
Q Consensus       108 ~~~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~  166 (392)
                      ..++++..||.|+..+||+|||.++|++++|||+.|+.+++++   ..|.+.+......
T Consensus       103 ~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~---~~~~~~~~~~~~~  158 (537)
T KOG0274|consen  103 GQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDD---KVWWRMCRELIGR  158 (537)
T ss_pred             cccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhcc---chhhhhhhhhccc
Confidence            3445999999999999999999999999999999999999999   8888887775443

>KOG4341|consensus

Probab=97.67  E-value=2.3e-05  Score=80.68  Aligned_cols=50  Identities=42%  Similarity=0.755  Sum_probs=43.8

Q ss_pred             ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhC
Q psy2846         112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRF  164 (392)
Q Consensus       112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~  164 (392)
                      ....||+|++++||||||..+|++|+|||+-||..+.|.   .-|+.+=...+
T Consensus        71 ~~~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~---~~~q~idL~t~  120 (483)
T KOG4341|consen   71 ISRSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG---SCWQHIDLFTF  120 (483)
T ss_pred             ccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc---ccceeeehhcc
Confidence            455699999999999999999999999999999999999   77886644444

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=97.65  E-value=8.9e-05  Score=65.19  Aligned_cols=69  Identities=22%  Similarity=0.370  Sum_probs=57.7

Q ss_pred             CCcEEEEEEEeCCCCCCCCCcCcccccc---ccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHH
Q psy2846         255 EGGVFYLYIRIPFSYPMHPPKVKFITRI---FHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIR  331 (392)
Q Consensus       255 egG~F~~~I~fP~dYP~~PP~V~F~T~I---fHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~Iq  331 (392)
                      .|+.|.+.|.+|++||..||.|....+.   +-|||+.+|.+|+---          +...+.|.|.-++..+|..  ++
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~----------~~~~D~~~P~~~~~~~l~~--a~  101 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDE----------ELVLDPWDPEGIIADCLER--AI  101 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecC----------CcccCccCHHHHHHHHHHH--HH
Confidence            6899999999999999999999888654   6899999999999411          1224799999999999985  78


Q ss_pred             HHHh
Q psy2846         332 DHIQ  335 (392)
Q Consensus       332 slL~  335 (392)
                      .+|.
T Consensus       102 ~lL~  105 (133)
T PF14461_consen  102 RLLE  105 (133)
T ss_pred             HHHH
Confidence            8885

>KOG0897|consensus

Probab=97.53  E-value=8.3e-05  Score=63.90  Aligned_cols=74  Identities=15%  Similarity=0.325  Sum_probs=53.9

Q ss_pred             EEEEEEeCCCCCCCCCcCccccccccc-cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHh-c
Q psy2846         259 FYLYIRIPFSYPMHPPKVKFITRIFHP-NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQ-R  336 (392)
Q Consensus       259 F~~~I~fP~dYP~~PP~V~F~T~IfHP-NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~-~  336 (392)
                      ..+.+.|+++||+.||.++-..|+-.- -|-.+|.||+.+|+            .++|+.+++|+.+++.  |-..+. .
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt------------~qgwssay~Ve~vi~q--iaatlVkG   78 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLT------------KQGWSSAYEVERVIMQ--IAATLVKG   78 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHc------------cccccchhhHHHHHHH--HHHHhhcc
Confidence            456788999999999999876643221 22258999999998            5799999999999995  666553 3


Q ss_pred             CCCCCCCCCc
Q psy2846         337 RPRVRFPLDD  346 (392)
Q Consensus       337 ~P~~~~Pln~  346 (392)
                      .-...+|++.
T Consensus        79 ~~ri~~~a~k   88 (122)
T KOG0897|consen   79 GARIEFPAEK   88 (122)
T ss_pred             ceeEecCcch
Confidence            3334456543

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=97.12  E-value=0.00036  Score=60.77  Aligned_cols=77  Identities=21%  Similarity=0.360  Sum_probs=49.5

Q ss_pred             ccEEEEEEecCCCCCCCCcEEE--EEEEeCCCCCCCCCcCcccccc-----ccccccCCCceeccCCCCcccccCCCCcC
Q psy2846         239 RCHWMATIAGPVASPYEGGVFY--LYIRIPFSYPMHPPKVKFITRI-----FHPNVSRHGDLSHAPAQGEIYHSNISSEC  311 (392)
Q Consensus       239 l~~W~v~I~GP~~TPYegG~F~--~~I~fP~dYP~~PP~V~F~T~I-----fHPNV~~~G~VCL~iL~~~~~~~~~~~~~  311 (392)
                      +....++|.    -.|+|..|.  +.|-+|.+||..||.+......     -+.+|+.+|+|.+..|+            
T Consensus        32 LL~L~Gtip----i~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~------------   95 (121)
T PF05743_consen   32 LLCLYGTIP----ITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQ------------   95 (121)
T ss_dssp             EEEEEEEEE----ECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHH------------
T ss_pred             EEEEecCcc----cccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhc------------
Confidence            445555554    357787775  5566899999999998775432     24499999999999886            


Q ss_pred             CCCCcc-cccHHHHHhHHHHHHHHh
Q psy2846         312 AETWGR-RHRLYSILFSNSIRDHIQ  335 (392)
Q Consensus       312 ~e~WsP-~~sI~sILlS~~IqslL~  335 (392)
                        +|++ ..+|..++..  ++..+.
T Consensus        96 --~W~~~~s~L~~lv~~--l~~~F~  116 (121)
T PF05743_consen   96 --NWNPPSSNLVDLVQE--LQAVFS  116 (121)
T ss_dssp             --T--TTTS-HHHHHHH--HHHCCC
T ss_pred             --cCCCCCCCHHHHHHH--HHHHHh
Confidence              8888 5667777764  555443

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=96.81  E-value=0.0026  Score=54.18  Aligned_cols=96  Identities=18%  Similarity=0.328  Sum_probs=71.1

Q ss_pred             ccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC---CccCccccchHHHHHhhhccCC
Q psy2846         112 SIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL---FNSNITVSNWYSVYAKLVESTP  188 (392)
Q Consensus       112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~---~~~~~~~~~Wkk~Y~kLves~p  188 (392)
                      .+..+|-+++.-|+..+.+..|.++-.-|.   .|+.+.  ++||+++|.+.||.   -.......+|+++|.++.+.. 
T Consensus         3 dvG~~py~ll~piL~~~~~~QL~~iE~~np---~l~~~t--deLW~~~i~rdFp~~~~~~~~~~~~~Wr~~Y~~~~~e~-   76 (109)
T PF06881_consen    3 DVGDVPYHLLRPILEKCSPEQLRRIEDNNP---HLIEDT--DELWKKLIKRDFPEESKRQKPKEPESWRELYEKLKKER-   76 (109)
T ss_pred             ccCCCCHHHHHHHHccCCHHHHHHHHHhCC---Ccchhh--HHHHHHHHHhHCcChhhcccccccchHHHHHHHHHHHH-
Confidence            467799999999999999999999999884   444332  49999999999985   222334469999999876531 


Q ss_pred             ccceeccccCCCCCcCccccHHHHHHHHHHHHHhhcCCCCC
Q psy2846         189 CYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDG  229 (392)
Q Consensus       189 c~~~~~~m~~~s~~s~~~~~s~a~kRL~kEl~~L~k~~p~g  229 (392)
                                      ......+..||.+-++..++....+
T Consensus        77 ----------------e~~~~~~~~~L~~~~~~~~~~K~~~  101 (109)
T PF06881_consen   77 ----------------EEKLKEATERLRKKIKKLQQEKQSR  101 (109)
T ss_pred             ----------------HHHHHHHHHHHHHHHHHHHhcCccC
Confidence                            1122345678888888887766554

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=95.48  E-value=0.011  Score=52.90  Aligned_cols=87  Identities=18%  Similarity=0.252  Sum_probs=39.2

Q ss_pred             cccHHHHHHHHHHHHHhhcC-------CCCCceeeeCCCCccEEEEEEecCCCCCCCCcE--EEEEEEeCCCCCCCCCcC
Q psy2846         206 EDNTWRHFRLRKEYNDIKLD-------PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGV--FYLYIRIPFSYPMHPPKV  276 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~-------~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~--F~~~I~fP~dYP~~PP~V  276 (392)
                      .....-..||..||+.|-+.       ..+.+.+.. +.+=..|.+..-=    .|+--.  |.+++.+|..||..||.+
T Consensus        20 rd~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~----~h~l~kYEF~~eFdIP~tYP~t~pEi   94 (161)
T PF08694_consen   20 RDGDLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWY----IHNLLKYEFDLEFDIPVTYPTTAPEI   94 (161)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEE----EETTEEEEEEEEEE--TTTTTS----
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEE----EeeeeeEEEeeecCCCccCCCCCcce
Confidence            34467789999999987541       222344432 2222334332210    112223  455566799999999998


Q ss_pred             cccccc-ccccccCCCceeccC
Q psy2846         277 KFITRI-FHPNVSRHGDLSHAP  297 (392)
Q Consensus       277 ~F~T~I-fHPNV~~~G~VCL~i  297 (392)
                      ..-.-- --.-.|..|+|||++
T Consensus        95 ~lPeLdGKTaKMYRGGkIClt~  116 (161)
T PF08694_consen   95 ALPELDGKTAKMYRGGKICLTD  116 (161)
T ss_dssp             B-GGGTTT-SSBCCCCBB---T
T ss_pred             eccccCCchhhhhcCceEeeec
Confidence            763210 012345689999984

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG2391|consensus

Probab=94.37  E-value=0.12  Score=52.41  Aligned_cols=108  Identities=17%  Similarity=0.208  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCc-eeeeCCC--CccEEEEEEecCCCCCCCCcEEEEE--EEeCCCCCCCCCcCccccc---
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGI-QAQPLDN--KRCHWMATIAGPVASPYEGGVFYLY--IRIPFSYPMHPPKVKFITR---  281 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI-~v~p~~~--dl~~W~v~I~GP~~TPYegG~F~~~--I~fP~dYP~~PP~V~F~T~---  281 (392)
                      .+.+-+..-+.....-.|.-- +...++.  .++...++|.    .+|.|..|.+=  |-+.+.||..||.+.....   
T Consensus        20 ~~~~~~l~lls~~~sL~P~t~tf~~~Dg~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M   95 (365)
T KOG2391|consen   20 LTRQDLLNLLSSFKSLRPKTDTFTHNDGRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTM   95 (365)
T ss_pred             hHHHHHHHHHHhccccCcccceEEecCCCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchh
Confidence            344445555555444333322 2222222  4555555553    57888887755  4569999999998865432   


Q ss_pred             --cccccccCCCceeccCCCCcccccCCCCcCCCCCccccc-HHHHHhHHHHHHHHhcC
Q psy2846         282 --IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHR-LYSILFSNSIRDHIQRR  337 (392)
Q Consensus       282 --IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~s-I~sILlS~~IqslL~~~  337 (392)
                        -.|-+|+.+|+|-|..|+              .|.+..+ |..++.  .+.+.+...
T Consensus        96 ~ik~~~hVd~nG~V~LPYLh--------------~W~~pssdLv~Liq--~l~a~f~~~  138 (365)
T KOG2391|consen   96 IIKVHEHVDPNGKVYLPYLH--------------NWDPPSSDLVGLIQ--ELIAAFSED  138 (365)
T ss_pred             hhHHhhccCCCCeEechhhc--------------cCCCccchHHHHHH--HHHHHhcCC
Confidence              138999999999999997              8998777 444443  244555433

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=93.44  E-value=0.15  Score=41.93  Aligned_cols=68  Identities=15%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             HHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEec--CCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846         213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAG--PVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR  281 (392)
Q Consensus       213 kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~G--P~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~  281 (392)
                      .+...|+..|+.-=+..+ ......+...+.+.+.+  ...+.-....+.+.+.||++||..+|.|.+.++
T Consensus         4 e~~~~EieaL~sIy~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~   73 (113)
T PF05773_consen    4 EQQEEEIEALQSIYPDDF-IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP   73 (113)
T ss_dssp             HHHHHHHHHHHHHSSSSE-SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCc-cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence            466788888886544333 22233445566777732  234444556899999999999999999876553

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=93.33  E-value=0.63  Score=40.92  Aligned_cols=99  Identities=17%  Similarity=0.285  Sum_probs=62.6

Q ss_pred             CceeeeCCCCccEEEEEEec--CCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc-CC-Cce--eccCCCCcc
Q psy2846         229 GIQAQPLDNKRCHWMATIAG--PVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS-RH-GDL--SHAPAQGEI  302 (392)
Q Consensus       229 gI~v~p~~~dl~~W~v~I~G--P~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~-~~-G~V--CL~iL~~~~  302 (392)
                      |+......+.-..|.+ |.|  -+.+.|.+..-.+.|.+|..||..+|.+.+..+    -+. .+ |.|  |-+......
T Consensus        13 g~~~E~v~eg~~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P----~L~~~~G~~iP~~~~~~~~~~   87 (122)
T PF14462_consen   13 GLRWETVTEGGRRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYP----PLKLADGGPIPNAAEVTQTFD   87 (122)
T ss_pred             CceEEEEEeCCccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECC----ceEccCCCcCCchhcchhhcC
Confidence            5555555554445655 666  466779999999999999999999998877654    332 23 334  444333222


Q ss_pred             cccC-CCCcCCCCCccccc-HHHHHhHHHHHHHH
Q psy2846         303 YHSN-ISSECAETWGRRHR-LYSILFSNSIRDHI  334 (392)
Q Consensus       303 ~~~~-~~~~~~e~WsP~~s-I~sILlS~~IqslL  334 (392)
                      +..+ ..+.|...|+|... |.+.|.-  |...|
T Consensus        88 G~~wQrWSRH~~~W~P~~D~l~T~l~~--v~~~L  119 (122)
T PF14462_consen   88 GRTWQRWSRHNNPWRPGVDDLWTHLAR--VEHAL  119 (122)
T ss_pred             CeeeeeecCCCCCCCCCCCcHHHHHHH--HHHHH
Confidence            2111 12456788999766 8887774  55555

>PF13013 F-box-like_2: F-box-like domain

Probab=92.59  E-value=0.17  Score=43.55  Aligned_cols=30  Identities=37%  Similarity=0.662  Sum_probs=27.8

Q ss_pred             ccCCCCHHHHHHHhccCCHHHHHHHHHHhH
Q psy2846         112 SIHSLPPEVLITVFSYLDDLSLCSVSRACT  141 (392)
Q Consensus       112 ~~~~LP~eil~~IFsyLd~~sL~~~~~VCk  141 (392)
                      .+.+||.||+..||.|++..+|..+...|+
T Consensus        21 tl~DLP~ELl~~I~~~C~~~~l~~l~~~~~   50 (109)
T PF13013_consen   21 TLLDLPWELLQLIFDYCNDPILLALSRTCR   50 (109)
T ss_pred             chhhChHHHHHHHHhhcCcHHHHHHHHHHH
Confidence            467799999999999999999999999998

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=91.96  E-value=0.53  Score=38.48  Aligned_cols=40  Identities=13%  Similarity=0.280  Sum_probs=27.0

Q ss_pred             EEEEEEecCCC-CCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846         241 HWMATIAGPVA-SPYEGGVFYLYIRIPFSYPMHPPKVKFIT  280 (392)
Q Consensus       241 ~W~v~I~GP~~-TPYegG~F~~~I~fP~dYP~~PP~V~F~T  280 (392)
                      .+.+.+..... +.-..-.+.+.+.||.+||..+|.|.+.+
T Consensus        24 ~~~i~l~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~~~~   64 (107)
T smart00591       24 EITIKLSPSSDEGEDQYVSLTLQVKLPENYPDEAPPISLLN   64 (107)
T ss_pred             EEEEEEecCCCCCCccceEEEEEEECCCCCCCCCCCeEEEC
Confidence            45555542211 12234568899999999999999988754

>KOG3357|consensus

Probab=91.74  E-value=0.28  Score=43.57  Aligned_cols=85  Identities=19%  Similarity=0.330  Sum_probs=50.5

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcE----------EEEEEEeCCCCCCCCCc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGV----------FYLYIRIPFSYPMHPPK  275 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~----------F~~~I~fP~dYP~~PP~  275 (392)
                      .....-.+||..||+.|-..      ++...++-..|.-.=.-+.||-|-|.+          |.+++.+|-.||..+|.
T Consensus        23 rd~~~wvqrlkeey~sli~y------vqnnk~~d~dwfrlesn~egtrwfgkcwy~hnllkyefdvefdipityp~tape   96 (167)
T KOG3357|consen   23 RDGDLWVQRLKEEYQSLIAY------VQNNKSNDNDWFRLESNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPE   96 (167)
T ss_pred             ccchHHHHHHHHHHHHHHHH------HHhCcccCCcceEeccCccccceehhhhHhhhhhhheeeeeeccccccCCCCcc
Confidence            44567789999999998642      221111112232222446777776643          44555669999999999


Q ss_pred             Ccccccc-ccccccCCCceecc
Q psy2846         276 VKFITRI-FHPNVSRHGDLSHA  296 (392)
Q Consensus       276 V~F~T~I-fHPNV~~~G~VCL~  296 (392)
                      +..-.-- ----.|..|+|||.
T Consensus        97 ialpeldgktakmyrggkiclt  118 (167)
T KOG3357|consen   97 IALPELDGKTAKMYRGGKICLT  118 (167)
T ss_pred             ccccccCchhhhhhcCceEeec
Confidence            8652100 01123458999997

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=90.87  E-value=0.21  Score=51.49  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=33.8

Q ss_pred             cCCCCHHHHHHHhccC-CHHHHHHHHHHhHHHHHHHhC
Q psy2846         113 IHSLPPEVLITVFSYL-DDLSLCSVSRACTRWFTIIAD  149 (392)
Q Consensus       113 ~~~LP~eil~~IFsyL-d~~sL~~~~~VCk~W~~i~~~  149 (392)
                      ...||+|||..|...| ...|+.+.+.|||.|+..+..
T Consensus         4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~   41 (373)
T PLN03215          4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG   41 (373)
T ss_pred             hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence            4579999999999999 688999999999999998764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	392
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		4e-20
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		1e-19
3jvz_A	146	E2~ubiquitin-Hect Length = 146		1e-19
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		3e-19
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		4e-19
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		4e-19
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		4e-19
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		4e-19
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		4e-19
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		4e-19
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-19
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-19
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		5e-19
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		7e-19
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		8e-19
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		1e-18
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-18
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		1e-18
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		1e-18
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		1e-18
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-18
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		2e-18
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		2e-18
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		2e-18
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		2e-17
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		2e-17
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		3e-17
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		3e-17
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		8e-17
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		3e-15
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-15
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		7e-15
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		7e-15
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		7e-15
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		8e-15
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		1e-14
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		2e-14
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		3e-14
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		3e-14
1jas_A	152	Hsubc2b Length = 152		8e-14
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		9e-14
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		1e-13
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		1e-13
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		1e-13
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-13
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		1e-13
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		1e-13
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		1e-13
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		1e-13
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		1e-13
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		2e-13
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		2e-13
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		2e-13
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		4e-13
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		1e-12
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		3e-12
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		4e-12
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		1e-11
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		1e-11
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		1e-11
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-11
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-11
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		3e-11
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		6e-11
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		3e-10
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		7e-09
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		9e-09
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		1e-08
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		1e-08
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		2e-07
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		2e-07
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		2e-07
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		4e-07
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		4e-07
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		5e-07
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		5e-07
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		6e-07
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		6e-07
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		6e-07
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		6e-07
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		6e-07
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		7e-07
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		7e-07
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		7e-07
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		7e-07
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		7e-07
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		8e-07
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		8e-07
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		1e-06
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		1e-06
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		1e-06
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		1e-06
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		2e-06
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		2e-06
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		3e-06
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		5e-06
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		2e-05
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		8e-05
1j74_A	145	Crystal Structure Of Mms2 Length = 145		4e-04
1zgu_A	139	Solution Structure Of The Human Mms2-Ubiquitin Comp		4e-04
3von_B	138	Crystalstructure Of The Ubiquitin Protease Length =		5e-04
4epo_A	149	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		6e-04
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		9e-04

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 95.9 bits (237), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           PKV F TRI+HPN++ +G +S
Sbjct: 67  PKVAFTTRIYHPNINSNGSIS 87

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 8   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 67
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           PKV F TRI+HPN++ +G +S
Sbjct: 68  PKVAFTTRIYHPNINSNGSIS 88

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 94.0 bits (232), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/81 (51%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 4   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           PKV F TRI+HPN++ +G +S
Sbjct: 64  PKVAFTTRIYHPNINSNGSIS 84

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 92.4 bits (228), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 15  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 74
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 75  PKVAFTTRIYHPNINSNGSI 94

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 67  PKVAFTTRIYHPNINSNGSI 86

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 10  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 70  PKVAFTTRIYHPNINSNGSI 89

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 92.4 bits (228), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 67  PKVAFTTRIYHPNINSNGSI 86

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE +D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           PKV F TRI+HPN++ +G +S
Sbjct: 65  PKVAFTTRIYHPNINSNGSIS 85

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 67  PKVAFTTRIYHPNINSNGSI 86

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 23  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 83  PKVAFTTRIYHPNINSNGSI 102

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 23  RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 82
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 83  PKVAFTTRIYHPNINSNGSI 102

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 67  PKVAFTTRIYHPNINSNGSI 86

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 91.7 bits (226), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 53/81 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP   +A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIHKELNDLARDPPAQCRAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           PKV F TRI+HP ++ +G +S
Sbjct: 65  PKVAFTTRIYHPAINSNGSIS 85

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 91.3 bits (225), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 50/80 (62%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY GGVF+L I  P  YP  P
Sbjct: 25  RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F T+I+HPN++  G +
Sbjct: 85  PKVNFTTKIYHPNINSQGAI 104

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE  D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 8   RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 68  PKVAFTTRIYHPNINSNGSI 87

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE  D++ DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 10  RIQKELQDLQRDPPAQCSAGPVGDDLFHWQATIMGPSDSPYQGGVFFLTIHFPTDYPFKP 69
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F T+I+HPN++ +G +
Sbjct: 70  PKVAFTTKIYHPNINSNGSI 89

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 41/86 (47%), Positives = 54/86 (62%)
Query: 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPF 267
           N+    R+ KE +D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P 
Sbjct: 9   NSMALKRINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPT 68
Query: 268 SYPMHPPKVKFITRIFHPNVSRHGDL 293
            YP  PPKV F TRI+HPN++ +G +
Sbjct: 69  DYPFKPPKVAFTTRIYHPNINSNGSI 94

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 90.9 bits (224), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE +D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 4   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 63
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 64  PKVAFTTRIYHPNINSNGSI 83

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 90.5 bits (223), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE +D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 7   RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 67  PKVAFTTRIYHPNINSNGSI 86

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 51/80 (63%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW AT  GP  SPY+GGVF+L I  P  YP  P
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATAMGPNDSPYQGGVFFLTIHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 67  PKVAFTTRIYHPNINSNGSI 86

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 52/80 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE +D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 13  RINKELSDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 72
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 73  PKVAFTTRIYHPNINSNGSI 92

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE +D++ DPP    A P+ +   HW A+I GP  SPY GGVF+L I  P  YP  P
Sbjct: 6   RIAKELSDLERDPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKP 65
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PK+ F T+I+HPN++ +G++
Sbjct: 66  PKISFTTKIYHPNINANGNI 85

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 89.7 bits (221), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 50/80 (62%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ +E  D+  DPP    A P+ +   HW ATI GP  SPY GGVF+L I  P  YP  P
Sbjct: 5   RINRELADLGKDPPSSSSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKP 64
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVNFTTRIYHPNINSNGSI 84

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 54/80 (67%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE +D++ DPP   +A P+ +   HW ATI GP  S Y+GGVF+L +  P  YP  P
Sbjct: 11  RIQKELSDLQRDPPAHCRAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 70
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PK+ F T+I+HPN++ +G +
Sbjct: 71  PKIAFTTKIYHPNINSNGSI 90

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE +D++ DPP    A P+ +   HW ATI GP  S Y+GGVF+L +  P  YP  P
Sbjct: 11  RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 70
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PK+ F T+I+HPN++ +G +
Sbjct: 71  PKIAFTTKIYHPNINSNGSI 90

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE +D++ DPP    A P+ +   HW ATI GP  S Y+GGVF+L +  P  YP  P
Sbjct: 7   RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PK+ F T+I+HPN++ +G +
Sbjct: 67  PKIAFTTKIYHPNINSNGSI 86

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 36/80 (45%), Positives = 53/80 (66%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE +D++ DPP    A P+ +   HW ATI GP  S Y+GGVF+L +  P  YP  P
Sbjct: 23  RIQKELSDLQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKP 82
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PK+ F T+I+HPN++ +G +
Sbjct: 83  PKIAFTTKIYHPNINSNGSI 102

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 53/78 (67%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE  +I+ DPP    A P+ +   HW ATI GP  SPY+GG+F+L +  P  YP   
Sbjct: 8   RIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKA 67
Query: 274 PKVKFITRIFHPNVSRHG 291
           P+V F+T+++HPN++++G
Sbjct: 68  PRVTFMTKVYHPNINKNG 85

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 79.7 bits (195), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 52/81 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  DP  GI A+P D+   ++  TI GP  SPYE G+F L + +P  YPM  
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           PKV+F+T+I+HPN+ R G +S
Sbjct: 67  PKVRFLTKIYHPNIDRLGRIS 87

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/78 (48%), Positives = 46/78 (58%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE  DI LDPP    A P  +    W +TI GP  S YEGGVF+L I     YP  P
Sbjct: 52  RIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKP 111
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV F TRI+H N++  G
Sbjct: 112 PKVTFRTRIYHCNINSQG 129

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE  ++  +PP GI A P+     H+   I GP  +PYEGG + L + +P  YPM P
Sbjct: 5   RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPN+ + G
Sbjct: 65  PKVRFLTKIYHPNIDKLG 82

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE  ++  +PP GI A P+     H+   I GP  +PYEGG + L + +P  YPM P
Sbjct: 5   RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPN+ + G
Sbjct: 65  PKVRFLTKIYHPNIDKLG 82

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 78.2 bits (191), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  DP  GI A+P D+   ++  TI GP  SPYE G+F L + +P  YPM  
Sbjct: 9   RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 68
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPN+ R G
Sbjct: 69  PKVRFLTKIYHPNIDRLG 86

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 78.2 bits (191), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 50/78 (64%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  DP  GI A+P D+   ++  TI GP  SPYE G+F L + +P  YPM  
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPN+ R G
Sbjct: 67  PKVRFLTKIYHPNIDRLG 84

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 48/78 (61%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
            RL+KE  DI+ +    I A   D+    W+  I GP  +PYEGG F L I IP  YP +
Sbjct: 26  LRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYN 85
Query: 273 PPKVKFITRIFHPNVSRH 290
           PPK+KF+T+I+HPN+S  
Sbjct: 86  PPKIKFVTKIWHPNISSQ 103

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 77.0 bits (188), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/81 (44%), Positives = 51/81 (62%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  DP  GI A+P D+   ++  TI GP  SPYE G+F L + +P  YPM  
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           PKV+F+T+I+HP + R G +S
Sbjct: 67  PKVRFLTKIYHPAIDRLGRIS 87

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 46/78 (58%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE  +I LDPP    A P  +    W +TI GP  S YEGGVF+L I     YP  P
Sbjct: 7   RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKP 66
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV F TRI+H N++  G
Sbjct: 67  PKVTFRTRIYHCNINSQG 84

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 32/80 (40%), Positives = 48/80 (60%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  ++ DPP GI   P DN    W A I GP  +P++GG F L ++    YP  P
Sbjct: 8   RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P V+F++R+FHPN+   G +
Sbjct: 68  PTVRFVSRMFHPNIYADGSI 87

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score = 74.7 bits (182), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  ++ DPP G+   P +N    W A I GP  +P+E G F L I     YP  P
Sbjct: 8   RLMRDFKRLQEDPPVGVSGAPSENNIMQWNAVIFGPEGTPFEDGTFKLVIEFSEEYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P V+F++++FHPNV   G +
Sbjct: 68  PTVRFLSKMFHPNVYADGSI 87

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 74.3 bits (181), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  +P  GI+A+P ++   ++   IAGP  SP+EGG F L + +P  YPM  
Sbjct: 9   RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 68
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPNV + G
Sbjct: 69  PKVRFMTKIYHPNVDKLG 86

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  +P  GI+A+P ++   ++   IAGP  SP+EGG F L + +P  YPM  
Sbjct: 7   RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 66
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPNV + G
Sbjct: 67  PKVRFMTKIYHPNVDKLG 84

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  +P  GI+A+P ++   ++   IAGP  SP+EGG F L + +P  YPM  
Sbjct: 5   RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 64
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPNV + G
Sbjct: 65  PKVRFMTKIYHPNVDKLG 82

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  +P  GI+A+P ++   ++   IAGP  SP+EGG F L + +P  YPM  
Sbjct: 10  RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 69
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPNV + G
Sbjct: 70  PKVRFMTKIYHPNVDKLG 87

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  ++ DPP G+   P ++    W A I GP  +P+E G F L +     YP  P
Sbjct: 8   RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P VKFI+++FHPNV   G +
Sbjct: 68  PTVKFISKMFHPNVYADGSI 87

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/80 (41%), Positives = 47/80 (58%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  +K D P G+ A PL +    W A I GP  +PYE G F L +     YP  P
Sbjct: 8   RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP 67
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P VKF++ +FHPNV  +G++
Sbjct: 68  PHVKFLSEMFHPNVYANGEI 87

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 51/78 (65%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  +P  GI+A+P ++   ++   IAGP  SP+EGG F L + +P  YPM  
Sbjct: 12  RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 71
Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPNV + G
Sbjct: 72  PKVRFMTKIYHPNVDKLG 89

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL  EY  + L+PP+GI A P++ +    W A I GP  + +E GVF   +  P  YP+ 
Sbjct: 7   RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 66
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK++F   +FHPN+   G     + HAP    + + +     AE W     +  IL S
Sbjct: 67  PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYES----SAERWSPVQSVEKILLS 121

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  ++ DPP G+   P ++    W A I GP  +P+E G F L +     YP  P
Sbjct: 11  RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 70
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P VKFI+++FHPNV   G +
Sbjct: 71  PTVKFISKMFHPNVYADGSI 90

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 73.9 bits (180), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL  EY  + L+PP+GI A P++ +    W A I GP  + +E GVF   +  P  YP+ 
Sbjct: 13  RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 72
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK++F   +FHPN+   G     + HAP    + + +     AE W     +  IL S
Sbjct: 73  PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYES----SAERWSPVQSVEKILLS 127

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL  EY  + L+PP+GI A P++ +    W A I GP  + +E GVF   +  P  YP+ 
Sbjct: 10  RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 69
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK++F   +FHPN+   G     + HAP    + + +     AE W     +  IL S
Sbjct: 70  PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYES----SAERWSPVQSVEKILLS 124

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 60/119 (50%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL  EY  + L+PP+GI A P++ +    W A I GP  + +E GVF   +  P  YP+ 
Sbjct: 11  RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 70
Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK++F   +FHPN+   G     + HAP    + + +     AE W     +  IL S
Sbjct: 71  PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYES----SAERWSPVQSVEKILLS 125

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 73.2 bits (178), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/108 (36%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 217 KEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKV 276
           KE   +  DPPDGI+  P +        TI GP  +PY GG+F + + +   +P  PPK 
Sbjct: 20  KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKG 79
Query: 277 KFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSI 324
            F+T+IFHPNV          A GEI  + +  +     G RH L +I
Sbjct: 80  YFLTKIFHPNVG---------ANGEICVNVLKRDWTAELGIRHVLLTI 118

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 72.4 bits (176), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/118 (34%), Positives = 64/118 (54%), Gaps = 9/118 (7%)
Query: 215 LRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           LR++  ++  +P +G  A  +D N    W   I GP  + YEGGVF  ++  P  YP+ P
Sbjct: 22  LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRP 81
Query: 274 PKVKFITRIFHPNVSRHGDLS----HAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PK+KFIT I+HPNV ++GD+     H P + +  +     +  E W   H + +I+ S
Sbjct: 82  PKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGY----EKPEERWLPIHTVETIMIS 135

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 58/110 (52%), Gaps = 15/110 (13%)
Query: 194 QHMIRPDTSSLQEDNTWRHF------------RLRKEYNDI---KLDPPDGIQAQPLDNK 238
           QHM  PD  +  +D                  R+++E+ ++   +    + I+   +D  
Sbjct: 29  QHMDSPDLGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDEN 88
Query: 239 RCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288
                  IAGP  +PYEGG + L I+IP +YP +PPKV+FIT+I+HPN+S
Sbjct: 89  FTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 138

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 41/60 (68%)
Query: 229 GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288
           G+ AQ +      W   IAGP+ +PYEGG F L I IP  YP +PPK+KF+T+I+HPN+S
Sbjct: 64  GVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNIS 123

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 13/103 (12%)
Query: 191 TCLQHMIRPDTSSLQEDNTWRHFR--LRKE---YNDIKLDPPDGIQAQPLDNKRCHWMAT 245
           T  Q M R   +++      R F+  L+ E    N IK+D         +D         
Sbjct: 8   TGGQQMGRGSMANIAVQRIKREFKEVLKSEETSKNQIKVDL--------VDENFTELRGE 59
Query: 246 IAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS 288
           IAGP  +PYEGG + L I+IP +YP +PPKV+FIT+I+HPN+S
Sbjct: 60  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNIS 102

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 214 RLRKEYNDI---KLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           R+++E+ ++   +    + I+   +D         IAGP  +PYEGG + L I+IP +YP
Sbjct: 10  RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 69
Query: 271 MHPPKVKFITRIFHPNVS 288
            +PPKV+FIT+I+HPN+S
Sbjct: 70  FNPPKVRFITKIWHPNIS 87

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 214 RLRKEYNDI---KLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           R+++E+ ++   +    + I+   +D         IAGP  +PYEGG + L I+IP +YP
Sbjct: 9   RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 68
Query: 271 MHPPKVKFITRIFHPNVS 288
            +PPKV+FIT+I+HPN+S
Sbjct: 69  FNPPKVRFITKIWHPNIS 86

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 67.8 bits (164), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWM-ATIAGPVASPYEGGVFYLYIRIPFSY 269
           R  R+ KE   +K DP   I  + +     H +  T  GP  +PYEGG F + I +P  Y
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 62
Query: 270 PMHPPKVKFITRIFHPNVS 288
           P  PPK++F T+++HPN+S
Sbjct: 63  PFKPPKMQFDTKVYHPNIS 81

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 50/78 (64%), Gaps = 3/78 (3%)
Query: 214 RLRKEYNDI---KLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           R+++E+ ++   +    + I+   +D         IAGP  +PYEGG + L I+IP +YP
Sbjct: 12  RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 71
Query: 271 MHPPKVKFITRIFHPNVS 288
            +PPKV+FIT+I+HPN+S
Sbjct: 72  FNPPKVRFITKIWHPNIS 89

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 59/118 (50%), Gaps = 9/118 (7%)
Query: 215 LRKEYNDIKLDPPDGIQAQPLDNKRCH-WMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           L+K+  D++  P DG  A  +D+   + W   + GP  + YEGG F   +  P  YP  P
Sbjct: 8   LKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKP 67
Query: 274 PKVKFITRIFHPNVSRHGDLS----HAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PK+KFI+ I+HPN+ + G++     H P   +  +        E W   H + +IL S
Sbjct: 68  PKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYER----PEERWLPVHTVETILLS 121

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWM-ATIAGPVASPYEGGVFYLYIRIPFSY 269
           R  R+ KE   +K DP   I  + +     H +  T  GP  +PYEGG F + I +P  Y
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61
Query: 270 PMHPPKVKFITRIFHPNVS 288
           P  PPK++F T+++HPN+S
Sbjct: 62  PFKPPKMQFDTKVYHPNIS 80

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 51/94 (54%), Gaps = 4/94 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           R  RL++E + +  +PP GI      ++     A I G   +PYE GVF L + IP  YP
Sbjct: 5   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 64
Query: 271 MHPPKVKFITRIFHPNVSRHG----DLSHAPAQG 300
             PP+++F+T I+HPN+   G    D+   P +G
Sbjct: 65  FEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKG 98

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 40/119 (33%), Positives = 53/119 (44%), Gaps = 9/119 (7%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL KE   +  D P GI A P  +N    W   I GP  +PY  GVF   +  P  YP+ 
Sbjct: 8   RLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLS 67
Query: 273 PPKVKFITRIFHPNVSRHGDLS----HAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK+ F   I HPN+  +G++     H+P        N+     E W     +  IL S
Sbjct: 68  PPKLTFTPSILHPNIYPNGEVCISILHSPGD----DPNMYELAEERWSPVQSVEKILLS 122

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 58.2 bits (139), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/80 (36%), Positives = 43/80 (53%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL++E   + +    GI A P  +    W+AT+ GP  + YE   + L +  P  YP  P
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKP 72
Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P VKF T  +HPNV + G++
Sbjct: 73  PVVKFTTPCWHPNVDQSGNI 92

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 229 GIQAQPLDNKRC---------HWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI 279
           G+Q +P++  R          +W   I GP  + YEGG F   ++ P  YP  PP  +F+
Sbjct: 15  GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFL 74
Query: 280 TRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           T+++HPN+   GD+  +     +         +E W     + +IL S
Sbjct: 75  TKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 122

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 50/108 (46%), Gaps = 9/108 (8%)
Query: 229 GIQAQPLDNKRC---------HWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI 279
           G+Q +P++  R          +W   I GP  + YEGG F   ++ P  YP  PP  +F+
Sbjct: 18  GLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFL 77
Query: 280 TRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           T+++HPN+   GD+  +     +         +E W     + +IL S
Sbjct: 78  TKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS 125

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL++E   + +    GI A P  +    W+ TI G   + YE   + L +  P  YP + 
Sbjct: 34  RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA 93
Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           P VKF+T  +HPNV   G++S
Sbjct: 94  PTVKFLTPCYHPNVDTQGNIS 114

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%)
Query: 212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
           +  L +++ D+K +   GI A+P+      W   I G   S ++G VF L I     Y  
Sbjct: 25  YLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNY 84
Query: 272 HPPKVKFITRIFHPNVSRH 290
            PP VKFIT  FHPNV  H
Sbjct: 85  APPVVKFITIPFHPNVDPH 103

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV+  G +
Sbjct: 71  YPSSPPKCKFEPPLFHPNVAPSGTV 95

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 8   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDLS 294
           YP  PPK KF   +FHPNV   G +S
Sbjct: 68  YPSSPPKCKFEPPLFHPNVYPSGTVS 93

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL++E    + D P G  A+P+           W A I G   + + GGV+ + +  P  
Sbjct: 8   RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPKVKF    +HPNV   G +
Sbjct: 68  YPSKPPKVKFPAGFYHPNVYPSGTI 92

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL++E    + D P G  A+P+           W A I G   + + GGV+ + +  P  
Sbjct: 10  RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 69
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPKVKF    +HPNV   G +
Sbjct: 70  YPSKPPKVKFPAGFYHPNVYPSGTI 94

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 52.4 bits (124), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 37/67 (55%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL+++Y  IK DP   I A+PL +    W   + GP  +PYEGG ++  +  P  +P  P
Sbjct: 18  RLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP 77
Query: 274 PKVKFIT 280
           P +  IT
Sbjct: 78  PSIYMIT 84

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
            R+ KE  D++  PP  ++    D+        +  P   PY    F L I  P  YP  
Sbjct: 4   MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 63
Query: 273 PPKVKFITRIFHPNVSRHGDL 293
           PP +KF T+I+HPNV  +G +
Sbjct: 64  PPMIKFTTKIYHPNVDENGQI 84

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%)
Query: 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
            R+ KE  D++  PP  ++    D+        +  P   PY    F L I  P  YP  
Sbjct: 7   MRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFK 66
Query: 273 PPKVKFITRIFHPNVSRHGDL 293
           PP +KF T+I+HPNV  +G +
Sbjct: 67  PPMIKFTTKIYHPNVDENGQI 87

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 10  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 70  YPSSPPKCKFEPPLFHPNVYPSGTV 94

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 8   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 68  YPSSPPKCKFEPPLFHPNVYPSGTV 92

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKR-----CHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL++E    + D P G  A+P  +        +W   I G   + +EGG++ L +  P  
Sbjct: 14  RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK +F   +FHPNV   G +
Sbjct: 74  YPTRPPKCRFTPPLFHPNVYPSGTV 98

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 9   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 68
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 69  YPSSPPKCKFEPPLFHPNVYPSGTV 93

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 71  YPSSPPKCKFEPPLFHPNVYPSGTV 95

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 71  YPSSPPKCKFEPPLFHPNVYPSGTV 95

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 10  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 69
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 70  YPSSPPKCKFEPPLFHPNVYPSGTV 94

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 71  YPSSPPKCKFEPPLFHPNVYPSGTV 95

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 215 LRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPP 274
           L KE  +++ + P   +    D  + H       P    Y+GG F     +P +Y M PP
Sbjct: 19  LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPP 78
Query: 275 KVKFITRIFHPNVSRHGDL 293
           KVK +T+I+HPN++  G++
Sbjct: 79  KVKCLTKIWHPNITETGEI 97

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 13  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 72
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 73  YPSSPPKCKFEPPLFHPNVYPSGTV 97

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 8   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 67
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHPNV   G +
Sbjct: 68  YPSSPPKCKFEPPLFHPNVYPSGTV 92

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 215 LRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPP 274
           L KE  +++ + P   +    D  + H       P    Y+GG F     +P +Y M PP
Sbjct: 19  LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPP 78
Query: 275 KVKFITRIFHPNVSRHGDL 293
           KVK +T+I+HPN++  G++
Sbjct: 79  KVKCLTKIWHPNITETGEI 97

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI-TRIFHPNVSRHGDLSHAPAQG 300
           W A I+GP  +PYE   F + I +P SYPM+PPK+ F+   I H NV          A G
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKS--------ATG 101
Query: 301 EIYHSNIS-SECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLD 345
           EI  + +   E    W   H ++++         + R P    PLD
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVW-------RLLREPVCDSPLD 140

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 17/106 (16%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI-TRIFHPNVSRHGDLSHAPAQG 300
           W A I+GP  +PYE   F + I +P SYPM+PPK+ F+   I H NV          A G
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKS--------ATG 101
Query: 301 EIYHSNIS-SECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLD 345
           EI  + +   E    W   H ++++         + R P    PLD
Sbjct: 102 EICLNILKPEEWTPVWDLLHCVHAVW-------RLLREPVCDSPLD 140

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
           W   I  P   PY+ G F + I  P  YP  PPK+ F T+I+HPN+   G +
Sbjct: 35  WQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 85

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
           W   I  P   PY+ G F + I  P  YP  PPK+ F T+I+HPN+   G +
Sbjct: 37  WQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEKGQV 87

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/62 (43%), Positives = 34/62 (54%), Gaps = 9/62 (14%)
Query: 242 WMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI-TRIFHPNVSRHGDLSHAPAQG 300
           W A I+GP  +PYE   F + I +P SYPM+PPK+ F+   I H NV          A G
Sbjct: 50  WEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKS--------ATG 101
Query: 301 EI 302
           EI
Sbjct: 102 EI 103

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/85 (35%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 214 RLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70
Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK KF   +FHP V   G +
Sbjct: 71  YPSSPPKCKFEPPLFHPQVYPSGTV 95

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 241 HWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287
            ++    GP  +PYEGGV+ + + +P  YP   P + F+ +IFHPN+
Sbjct: 52  EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNI 98

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 248 GPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV 287
           GP  +PYE G + L++++P  YP   P + F  RI HPNV
Sbjct: 46  GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV 85

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 15/42 (35%), Positives = 26/42 (61%)
Query: 248 GPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR 289
           GP  + YEGG++ +++ +P  YP   P + F+ ++ HPNV  
Sbjct: 37  GPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDE 78

>pdb|1J74|A Chain A, Crystal Structure Of Mms2 Length = 145

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
           R+FRL +E  + +    DG  +  L++        W   I GP  + YE  ++ L +   
Sbjct: 11  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG 70
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHA 296
             YP  PP V+F+T+I    ++    +  A
Sbjct: 71  PKYPEAPPSVRFVTKINMNGINNSSGMVDA 100

>pdb|1ZGU|A Chain A, Solution Structure Of The Human Mms2-Ubiquitin Complex Length = 139

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
           R+FRL +E  + +    DG  +  L++        W   I GP  + YE  ++ L +   
Sbjct: 5   RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG 64
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHA 296
             YP  PP V+F+T+I    ++    +  A
Sbjct: 65  PKYPEAPPSVRFVTKINMNGINNSSGMVDA 94

>pdb|3VON|B Chain B, Crystalstructure Of The Ubiquitin Protease Length = 138

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
           R+FRL +E  + +    DG  +  L++        W   I GP  + YE  ++ L +   
Sbjct: 6   RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG 65
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHA 296
             YP  PP V+F+T+I    ++    +  A
Sbjct: 66  PKYPEAPPSVRFVTKINMNGINNSSGMVDA 95

>pdb|4EPO|A Chain A, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 149

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIRIP 266
           R+FRL +E  + +    DG  +  L++        W   I GP  + YE  ++ L +   
Sbjct: 16  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTNYENRIYSLKVECG 75
Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHA 296
             YP  PP V+F+T+I    ++    +  A
Sbjct: 76  PKYPEAPPSVRFVTKINMNGINNSSGMVDA 105

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 4/84 (4%)
Query: 214 RLRKEYNDIKLDPPDG--IQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
           RL+KE   ++ DPP G  +  + + N    W+  + G   + YEG  F L  +    YP 
Sbjct: 26  RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 85
Query: 272 HPPKVKFITRIF--HPNVSRHGDL 293
             P+V F       HP+V  +G +
Sbjct: 86  DSPQVMFTGENIPVHPHVYSNGHI 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	392
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	3e-36
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	6e-36
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	9e-36
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	1e-35
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	1e-35
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	1e-35
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-35
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	2e-35
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	6e-35
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	6e-35
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	1e-34
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	2e-33
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	3e-33
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	8e-33
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	1e-32
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	2e-32
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	2e-32
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	3e-32
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	3e-32
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	5e-32
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	1e-31
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	3e-31
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	4e-31
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	4e-31
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	5e-31
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	1e-30
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	2e-30
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	2e-30
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	3e-30
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	4e-30
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	4e-30
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	9e-30
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	1e-29
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	1e-29
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	2e-29
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	3e-29
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	5e-29
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	6e-29
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	9e-29
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	1e-28
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	2e-28
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	4e-28
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	9e-28
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	2e-27
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	3e-27
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	2e-26
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	3e-24
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	2e-23
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	5e-19
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	2e-15
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	2e-09
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	1e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-05
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	2e-05
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	3e-05
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	9e-05
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	6e-04

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  128 bits (325), Expect = 3e-36
 Identities = 43/92 (46%), Positives = 55/92 (59%)

Query: 202 SSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYL 261
           S L    +    R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L
Sbjct: 11  SGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFL 70

Query: 262 YIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
            I  P  YP  PPKV F TRI+HPN++ +G +
Sbjct: 71  TIHFPTDYPFKPPKVAFTTRIYHPNINSNGSI 102

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  127 bits (322), Expect = 6e-36
 Identities = 40/86 (46%), Positives = 53/86 (61%)

Query: 208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPF 267
           +     R++KE  D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P 
Sbjct: 2   SHMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPT 61

Query: 268 SYPMHPPKVKFITRIFHPNVSRHGDL 293
            YP  PPKV F TRI+HPN++ +G +
Sbjct: 62  DYPFKPPKVAFTTRIYHPNINSNGSI 87

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  127 bits (321), Expect = 9e-36
 Identities = 34/79 (43%), Positives = 50/79 (63%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE  ++  +PP GI A P+     H+   I GP  +PYEGG + L + +P  YPM P
Sbjct: 5   RITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEP 64

Query: 274 PKVKFITRIFHPNVSRHGD 292
           PKV+F+T+I+HPN+ + G 
Sbjct: 65  PKVRFLTKIYHPNIDKLGR 83

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  127 bits (320), Expect = 1e-35
 Identities = 34/87 (39%), Positives = 53/87 (60%)

Query: 207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIP 266
            +     R+ KE   +  +P  GI+A+P ++   ++   IAGP  SP+EGG F L + +P
Sbjct: 2   GSAGLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLP 61

Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDL 293
             YPM  PKV+F+T+I+HPNV + G +
Sbjct: 62  EEYPMAAPKVRFMTKIYHPNVDKLGRI 88

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  126 bits (320), Expect = 1e-35
 Identities = 36/79 (45%), Positives = 50/79 (63%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  DP  GI A+P D+   ++  TI GP  SPYE G+F L + +P  YPM  
Sbjct: 9   RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 68

Query: 274 PKVKFITRIFHPNVSRHGD 292
           PKV+F+T+I+HPN+ R G 
Sbjct: 69  PKVRFLTKIYHPNIDRLGR 87

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  127 bits (321), Expect = 1e-35
 Identities = 40/80 (50%), Positives = 50/80 (62%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY GGVF+L I  P  YP  P
Sbjct: 25  RINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKP 84

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F T+I+HPN++  G +
Sbjct: 85  PKVNFTTKIYHPNINSQGAI 104

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  127 bits (320), Expect = 2e-35
 Identities = 30/79 (37%), Positives = 45/79 (56%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL++E + +  +PP GI      ++     A I G   +PYE GVF L + IP  YP  P
Sbjct: 8   RLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEP 67

Query: 274 PKVKFITRIFHPNVSRHGD 292
           P+++F+T I+HPN+   G 
Sbjct: 68  PQIRFLTPIYHPNIDSAGR 86

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  126 bits (319), Expect = 2e-35
 Identities = 31/79 (39%), Positives = 45/79 (56%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
            + KE   +  DPPDGI+  P +        TI GP  +PY GG+F + + +   +P  P
Sbjct: 17  LVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP 76

Query: 274 PKVKFITRIFHPNVSRHGD 292
           PK  F+T+IFHPNV  +G+
Sbjct: 77  PKGYFLTKIFHPNVGANGE 95

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  127 bits (320), Expect = 6e-35
 Identities = 37/90 (41%), Positives = 51/90 (56%)

Query: 202 SSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYL 261
            +L    +    RL+KE  DI+ +    I A   D+    W+  I GP  +PYEGG F L
Sbjct: 15  ENLYFQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTL 74

Query: 262 YIRIPFSYPMHPPKVKFITRIFHPNVSRHG 291
            I IP  YP +PPK+KF+T+I+HPN+S   
Sbjct: 75  AITIPNDYPYNPPKIKFVTKIWHPNISSQT 104

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  126 bits (318), Expect = 6e-35
 Identities = 40/107 (37%), Positives = 52/107 (48%)

Query: 186 STPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMAT 245
                T  +   +   S   +  +    R++KE  DI LDPP    A P  +    W +T
Sbjct: 24  EKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRST 83

Query: 246 IAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
           I GP  S YEGGVF+L I     YP  PPKV F TRI+H N++  G 
Sbjct: 84  ILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGV 130

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  125 bits (315), Expect = 1e-34
 Identities = 30/108 (27%), Positives = 46/108 (42%)

Query: 186 STPCYTCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMAT 245
             P  T +    +    S          RL++E   + +    GI A P  +    W+ T
Sbjct: 6   RDPAATSVAAARKGAEPSGGAARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGT 65

Query: 246 IAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL 293
           I G   + YE   + L +  P  YP + P VKF+T  +HPNV   G++
Sbjct: 66  IHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNI 113

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  121 bits (305), Expect = 2e-33
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIR 264
             R+FRL +E  + +    DG  +  L++        W   I GP  + YE  ++ L I 
Sbjct: 24  VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 83

Query: 265 IPFSYPMHPPKVKFITRIFHPNVSRHG 291
               YP  PP V+F+T+I    V+   
Sbjct: 84  CGPKYPEAPPFVRFVTKINMNGVNSSN 110

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  127 bits (320), Expect = 3e-33
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE ND+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 7   RIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKP 66

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 67  PKVAFTTRIYHPNINSNGSI 86

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  119 bits (301), Expect = 8e-33
 Identities = 29/80 (36%), Positives = 43/80 (53%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL++E   + +    GI A P  +    W+AT+ GP  + YE   + L +  P  YP  P
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKP 72

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P VKF T  +HPNV + G++
Sbjct: 73  PVVKFTTPCWHPNVDQSGNI 92

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  118 bits (299), Expect = 1e-32
 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 1/77 (1%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKR-CHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           R+ KE   +K DP   I  + +      H   T  GP  +PYEGG F + I +P  YP  
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFK 64

Query: 273 PPKVKFITRIFHPNVSR 289
           PPK++F T+++HPN+S 
Sbjct: 65  PPKMQFDTKVYHPNISS 81

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  120 bits (303), Expect = 2e-32
 Identities = 31/82 (37%), Positives = 45/82 (54%), Gaps = 1/82 (1%)

Query: 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKR-CHWMATIAGPVASPYEGGVFYLYIRIPF 267
           + R  R+ KE   +K DP   I  + +      H   T  GP  +PYEGG F + I +P 
Sbjct: 1   SSRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPM 60

Query: 268 SYPMHPPKVKFITRIFHPNVSR 289
            YP  PPK++F T+++HPN+S 
Sbjct: 61  EYPFKPPKMQFDTKVYHPNISS 82

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  119 bits (300), Expect = 2e-32
 Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 4/87 (4%)

Query: 209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKR----CHWMATIAGPVASPYEGGVFYLYIR 264
             R+FRL +E  + +    DG  +  L++        W   I GP  + YE  ++ L I 
Sbjct: 34  VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIE 93

Query: 265 IPFSYPMHPPKVKFITRIFHPNVSRHG 291
               YP  PP V+F+T+I    V+   
Sbjct: 94  CGPKYPEAPPFVRFVTKINMNGVNSSN 120

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  118 bits (297), Expect = 3e-32
 Identities = 31/79 (39%), Positives = 48/79 (60%), Gaps = 3/79 (3%)

Query: 214 RLRKEYNDIKLDPPD---GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           R+++E+ ++          I+   +D         IAGP  +PYEGG + L I+IP +YP
Sbjct: 12  RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 71

Query: 271 MHPPKVKFITRIFHPNVSR 289
            +PPKV+FIT+I+HPN+S 
Sbjct: 72  FNPPKVRFITKIWHPNISS 90

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  118 bits (297), Expect = 3e-32
 Identities = 32/80 (40%), Positives = 48/80 (60%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  ++ DPP GI   P DN    W A I GP  +P++GG F L ++    YP  P
Sbjct: 8   RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKP 67

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P V+F++R+FHPN+   G +
Sbjct: 68  PTVRFVSRMFHPNIYADGSI 87

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  117 bits (295), Expect = 5e-32
 Identities = 18/76 (23%), Positives = 34/76 (44%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
            L ++  D       G   +  +     +     GP  + YEGG++ +++ +P  YP   
Sbjct: 3   SLTRKQCDFTKLIMAGYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFAS 62

Query: 274 PKVKFITRIFHPNVSR 289
           P + F+ ++ HPNV  
Sbjct: 63  PSIGFMNKLLHPNVDE 78

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  116 bits (293), Expect = 1e-31
 Identities = 25/79 (31%), Positives = 40/79 (50%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
            L KE  +++ + P   +    D  + H       P    Y+GG F     +P +Y M P
Sbjct: 18  LLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVP 77

Query: 274 PKVKFITRIFHPNVSRHGD 292
           PKVK +T+I+HPN++  G+
Sbjct: 78  PKVKCLTKIWHPNITETGE 96

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  114 bits (288), Expect = 3e-31
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE ++   +PP         N    W+    G   + Y   V+ L I  P  YP+ P
Sbjct: 10  RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKP 69

Query: 274 PKVKFITR-IFHPNVSRHGDL 293
           P V F+ +   H +V  +GD+
Sbjct: 70  PIVYFLQKPPKHTHVYSNGDI 90

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  115 bits (290), Expect = 4e-31
 Identities = 30/77 (38%), Positives = 39/77 (50%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
            L +++ D+K +   GI A+P+      W   I G   S ++G VF L I     Y   P
Sbjct: 27  LLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAP 86

Query: 274 PKVKFITRIFHPNVSRH 290
           P VKFIT  FHPNV  H
Sbjct: 87  PVVKFITIPFHPNVDPH 103

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  116 bits (292), Expect = 4e-31
 Identities = 32/81 (39%), Positives = 43/81 (53%)

Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           +  R              G+ AQ +      W   IAGP+ +PYEGG F L I IP  YP
Sbjct: 46  QLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYP 105

Query: 271 MHPPKVKFITRIFHPNVSRHG 291
            +PPK+KF+T+I+HPN+S   
Sbjct: 106 YNPPKMKFVTKIWHPNISSQT 126

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  116 bits (292), Expect = 5e-31
 Identities = 31/79 (39%), Positives = 49/79 (62%), Gaps = 3/79 (3%)

Query: 214 RLRKEYNDIK---LDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           R+++E+ ++        + I+   +D         IAGP  +PYEGG + L I+IP +YP
Sbjct: 9   RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 68

Query: 271 MHPPKVKFITRIFHPNVSR 289
            +PPKV+FIT+I+HPN+S 
Sbjct: 69  FNPPKVRFITKIWHPNISS 87

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  116 bits (293), Expect = 1e-30
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 168 NSNITVSNWYSVYAKLVESTPCYTC-LQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDP 226
             +       + + +    +P            D  S  +       R+++E+ ++    
Sbjct: 14  RGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSEFDMANIAVQRIKREFKEVLKSE 73

Query: 227 PD---GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF 283
                 I+   +D         IAGP  +PYEGG + L I+IP +YP +PPKV+FIT+I+
Sbjct: 74  ETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW 133

Query: 284 HPNVSR 289
           HPN+S 
Sbjct: 134 HPNISS 139

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  112 bits (283), Expect = 2e-30
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE N+   +PP         +    W+    G   + Y   V+ + I  P +YP+ P
Sbjct: 24  RIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKP 83

Query: 274 PKVKFITR-IFHPNVSRHGDL 293
           P V F+ +   H +V  +GD+
Sbjct: 84  PIVYFLQKPPKHTHVYSNGDI 104

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  113 bits (285), Expect = 2e-30
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL++E    + D P G  A+P+           W A I G   + + GGV+ + +  P  
Sbjct: 8   RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67

Query: 269 YPMHPPKVKFITRIFHPNVSRHG 291
           YP  PPKVKF    +HPNV   G
Sbjct: 68  YPSKPPKVKFPAGFYHPNVYPSG 90

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  113 bits (284), Expect = 3e-30
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           R+ KE  D++  PP  ++     D     W A +  P   PY    F L I  P  YP  
Sbjct: 8   RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFK 66

Query: 273 PPKVKFITRIFHPNVSRHGD 292
           PP +KF T+I+HPNV  +G 
Sbjct: 67  PPMIKFTTKIYHPNVDENGQ 86

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  112 bits (282), Expect = 4e-30
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL KE  +I+       +   + +     W   I  P   PY+ G F + I  P  YP  
Sbjct: 6   RLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFK 64

Query: 273 PPKVKFITRIFHPNVSRHGD 292
           PPK+ F T+I+HPN+   G 
Sbjct: 65  PPKITFKTKIYHPNIDEKGQ 84

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  112 bits (283), Expect = 4e-30
 Identities = 33/80 (41%), Positives = 47/80 (58%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  +K D P G+ A PL +    W A I GP  +PYE G F L +     YP  P
Sbjct: 8   RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP 67

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           P VKF++ +FHPNV  +G++
Sbjct: 68  PHVKFLSEMFHPNVYANGEI 87

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  111 bits (280), Expect = 9e-30
 Identities = 31/84 (36%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 11  RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 70

Query: 269 YPMHPPKVKFITRIFHPNVSRHGD 292
           YP  PPK KF   +FHPNV   G 
Sbjct: 71  YPSSPPKCKFEPPLFHPNVYPSGT 94

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  111 bits (280), Expect = 1e-29
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 9/119 (7%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
            LR++  ++  +P +G  A  + DN    W   I GP  + YEGGVF  ++  P  YP+ 
Sbjct: 21  LLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLR 80

Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK+KFIT I+HPNV ++G     + H P + +  +        E W   H + +I+ S
Sbjct: 81  PPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPE----ERWLPIHTVETIMIS 135

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  111 bits (279), Expect = 1e-29
 Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 5/85 (5%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-----HWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL++E    + D P G  A+P  +        +W   I G   + +EGG++ L +  P  
Sbjct: 14  RLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEE 73

Query: 269 YPMHPPKVKFITRIFHPNVSRHGDL 293
           YP  PPK +F   +FHPNV   G +
Sbjct: 74  YPTRPPKCRFTPPLFHPNVYPSGTV 98

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  111 bits (279), Expect = 2e-29
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 9/119 (7%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
            L  E   ++ +P +G +   +D     +W   I GP  + YEGG F   ++ P  YP  
Sbjct: 11  ALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYS 70

Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PP  +F+T+++HPN+   G     + H P              +E W     + +IL S
Sbjct: 71  PPAFRFLTKMWHPNIYETGDVCISILHPPVDDP----QSGELPSERWNPTQNVRTILLS 125

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  109 bits (274), Expect = 3e-29
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPL---DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           RL+KE   ++ DPP G+        ++    W+  + G   + YEG  F L  +    YP
Sbjct: 26  RLQKELLALQNDPPPGMTLNEKSVQNSIT-QWIVDMEGAPGTLYEGEKFQLLFKFSSRYP 84

Query: 271 MHPPKVKFITR--IFHPNVSRHGD 292
              P+V F       HP+V  +G 
Sbjct: 85  FDSPQVMFTGENIPVHPHVYSNGH 108

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  108 bits (273), Expect = 5e-29
 Identities = 32/121 (26%), Positives = 51/121 (42%), Gaps = 15/121 (12%)

Query: 211 RHFRLRKEYNDIKLDPPDG-IQAQPLDNKRC---HWMATIAGPVASPYEGGVFYLYIRIP 266
           R+FRL +E    +             D+       W  TI GP  S +E  ++ L I   
Sbjct: 7   RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 66

Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
            +YP  PPKV FI++I  P V+        P  GE+  ++  +     W R + + ++L 
Sbjct: 67  PNYPDSPPKVTFISKINLPCVN--------PTTGEVQ-TDFHTL--RDWKRAYTMETLLL 115

Query: 327 S 327
            
Sbjct: 116 D 116

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  110 bits (277), Expect = 6e-29
 Identities = 27/81 (33%), Positives = 40/81 (49%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL+++Y  IK DP   I A+PL +    W   + GP  +PYEGG ++  +  P  +P  P
Sbjct: 18  RLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP 77

Query: 274 PKVKFITRIFHPNVSRHGDLS 294
           P +  IT       +    LS
Sbjct: 78  PSIYMITPNGRFKCNTRLCLS 98

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  109 bits (275), Expect = 9e-29
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 4/82 (4%)

Query: 214 RLRKEYNDIKLDPPDGIQAQP----LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSY 269
           RL+++ + + L P   +         D  +   +  I  P    Y  G     +     Y
Sbjct: 33  RLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVY 92

Query: 270 PMHPPKVKFITRIFHPNVSRHG 291
           P+ PPKV  + +IFHPN+   G
Sbjct: 93  PIEPPKVVCLKKIFHPNIDLKG 114

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  108 bits (273), Expect = 1e-28
 Identities = 40/119 (33%), Positives = 60/119 (50%), Gaps = 9/119 (7%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL  EY  + L+PP+GI A P++ +    W A I GP  + +E GVF   +  P  YP+ 
Sbjct: 7   RLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLS 66

Query: 273 PPKVKFITRIFHPNVSRHG----DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK++F   +FHPN+   G     + HAP    + + + +    E W     +  IL S
Sbjct: 67  PPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSA----ERWSPVQSVEKILLS 121

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  108 bits (271), Expect = 2e-28
 Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
             R+   D         +  P D     +     GP  +PYE G + L++++P  YP   
Sbjct: 13  SNRRREMDYMRLCNSTRKVYPSDTVA-EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 71

Query: 274 PKVKFITRIFHPNVS 288
           P + F  RI HPNV 
Sbjct: 72  PSIGFCNRILHPNVD 86

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  107 bits (269), Expect = 4e-28
 Identities = 41/119 (34%), Positives = 54/119 (45%), Gaps = 9/119 (7%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL KE   +  D P GI A P  +N    W   I GP  +PY  GVF   +  P  YP+ 
Sbjct: 8   RLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLS 67

Query: 273 PPKVKFITRIFHPNVSRHGD--LS--HAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK+ F   I HPN+  +G+  +S  H+P        N+     E W     +  IL S
Sbjct: 68  PPKLTFTPSILHPNIYPNGEVCISILHSPGDDP----NMYELAEERWSPVQSVEKILLS 122

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  106 bits (267), Expect = 9e-28
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+  +   +     +      L+     ++    GP  +PYEGGV+ + + +P  YP   
Sbjct: 29  RMDTDVIKLIESKHEVTILGGLN----EFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKS 84

Query: 274 PKVKFITRIFHPNVSR 289
           P + F+ +IFHPN+  
Sbjct: 85  PSIGFMNKIFHPNIDE 100

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  105 bits (265), Expect = 2e-27
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++K+ N++ L     I     D+   ++   I  P    Y+ G F    ++   YP  P
Sbjct: 30  RIQKDINELNLPKTCDISFSDPDDLL-NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDP 87

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKVK  T ++HPN+   G++
Sbjct: 88  PKVKCETMVYHPNIDLEGNV 107

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  104 bits (262), Expect = 3e-27
 Identities = 27/102 (26%), Positives = 39/102 (38%), Gaps = 4/102 (3%)

Query: 195 HMIRPDTSSLQEDNTWRHFRLRKEYNDI-KLDPPDGIQAQPL---DNKRCHWMATIAGPV 250
           H      +   +    R FRL  E     K +  +G+        D    +W  TI G  
Sbjct: 6   HHSSGRENLYFQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQP 65

Query: 251 ASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
            + +E  ++ L I    +YP  PP VKF T+I    V   G 
Sbjct: 66  GTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIEMSCVDNCGR 107

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  102 bits (257), Expect = 2e-26
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++K+ N++ L     I     D+   ++   I  P    Y+ G F    ++   YP  P
Sbjct: 10  RIQKDINELNLPKTCDISFSDPDDLL-NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDP 67

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKVK  T ++HPN+   G++
Sbjct: 68  PKVKCETMVYHPNIDLEGNV 87

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score = 97.5 bits (243), Expect = 3e-24
 Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 13/88 (14%)

Query: 214 RLRKEYNDIK---------LDPPDGIQAQPL---DNKRCHWMATIAGPVASPYEGGVFYL 261
           R+ KEY  I           +P  GI        +     W A I+GP  +PYE   F +
Sbjct: 10  RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRI 69

Query: 262 YIRIPFSYPMHPPKVKFI-TRIFHPNVS 288
            I +P SYPM+PPK+ F+   I H NV 
Sbjct: 70  LIEVPSSYPMNPPKISFMQNNILHCNVK 97

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score = 94.8 bits (236), Expect = 2e-23
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 14/93 (15%)

Query: 214 RLRKEYNDIKLD------------PPDGIQAQPLDNKRCHWMATIAGPVASPY--EGGVF 259
           R+ K+   +  +            P          +   +W+  +  P  S Y   G  +
Sbjct: 12  RIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTY 71

Query: 260 YLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGD 292
            L +     YP  PP V+F+T ++ P V+  G 
Sbjct: 72  QLSVLFSDDYPHEPPTVRFVTPVYSPLVTGEGG 104

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score = 85.9 bits (212), Expect = 5e-19
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 9/106 (8%)

Query: 195 HMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPP----DGIQAQPLDNKRCHWMATIAGPV 250
           H +    ++   ++  R  RL +E   +    P      +  +  + +       I GP 
Sbjct: 61  HYMSQVKNANDANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPA 120

Query: 251 ASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI-----FHPNVSRHG 291
            +PY  G F   +  P  YP  PP V   T       F+PN+   G
Sbjct: 121 DTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDG 166

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score = 73.4 bits (180), Expect = 2e-15
 Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 15/93 (16%)

Query: 214 RLRKEYNDIKLDPPDGIQ---AQPLDNKRCHWMATIAG-PVASPYEGGV----------- 258
           RL KE  DI             + +++    W   +      SP    +           
Sbjct: 31  RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEY 90

Query: 259 FYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHG 291
             L      ++P  PP V+ +  +        G
Sbjct: 91  ILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGG 123

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 52.2 bits (126), Expect = 2e-09
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 106 QNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
           +N  G S  SLP E+L+ +FS L    L  VS  C RW+ + +D
Sbjct: 2   ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 55.1 bits (132), Expect = 1e-08
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 110 GSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNS 169
            S++  LP +V + + S+L    LC +      W   + D      WRYF+L   P ++S
Sbjct: 2   ASTLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRD---PILWRYFLLRDLPSWSS 58

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 18/44 (40%), Positives = 25/44 (56%)

Query: 106 QNTGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
           +N  G S  SLP E+L+ +FS L    L  VS  C RW+ + +D
Sbjct: 2   ENFPGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 45

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 41/286 (14%), Positives = 80/286 (27%), Gaps = 91/286 (31%)

Query: 110 GSSIHSLPPEV------LITVFS--------------YLDDLSLCSVSRACTRWFTIIAD 149
                 LP EV       +++ +              +++   L ++  +       +  
Sbjct: 312 DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS------LNV 365

Query: 150 LISSDQWRYFV-LTRFPLFNSNITVSN----WYS-------------VYAKLVESTPC-Y 190
           L  ++  + F  L+ FP  +++I        W+                  LVE  P   
Sbjct: 366 LEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

Query: 191 TCLQHMIRPDTSSLQEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPV 250
           T     I  +     E+    H  +   YN  K    D +    LD              
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ------------- 471

Query: 251 ASPYEGGVFYLYIRIPFSYPM----HPPKVKFITRIF-------------HPNVSRHGDL 293
              Y    FY +I     + +    HP ++     +F                 +  G +
Sbjct: 472 ---Y----FYSHI----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520

Query: 294 SHAPAQGEIYHSNISSECAETWGRRHRLYSIL-FSNSIRDHIQRRP 338
            +   Q + Y   I     +       + +IL F   I +++    
Sbjct: 521 LNTLQQLKFYKPYICDNDPK---YERLVNAILDFLPKIEENLICSK 563

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 112 SIHSLPPEVLITVFSYLDDLS-LCSVSRACTRWFTIIADLISS 153
           S  +   +V+  V +Y+ D     S S  C RWF I ++    
Sbjct: 12  SCVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREH 54

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 111 SSIHSLPPEVLITVFSYLDDLS-LCSVSRACTRWFTI 146
               S P EVL  VFS++       SVS  C  W+ I
Sbjct: 4   RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI 40

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 14/70 (20%), Positives = 25/70 (35%), Gaps = 2/70 (2%)

Query: 112 SIHSLPPEVLITVFSYLDDLSLCSVSRA-CTRWFTIIADLISSDQWRYFVLTRFPLFNSN 170
            +  LP  +L+ V + L    L    R  C RW  ++ D       +       P  +++
Sbjct: 50  YLAELPEPLLLRVLAELPATELVQACRLVCLRWKELV-DGAPLWLLKCQQEGLVPEGSAD 108

Query: 171 ITVSNWYSVY 180
               +W   Y
Sbjct: 109 EERDHWQQFY 118

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* Length = 445

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
           I  LP E+ + V S+L+   L   ++ C  W  +  D
Sbjct: 19  ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED 55

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* Length = 464

 Score = 43.4 bits (103), Expect = 9e-05
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWR 157
           I SLP E+ + +F+YL    + +       W  II    S+  W+
Sbjct: 15  ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK--STSLWK 57

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 Length = 435

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 5/55 (9%)

Query: 113 IHSLPPEVL----ITVFSYLDDLSLCSVSRACTRWFTIIAD-LISSDQWRYFVLT 162
           I +LP   L      + SYLD  SLC+    C  W+ + +D ++        V T
Sbjct: 11  ITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT 65

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	392
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	99.97
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	99.96
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.87
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.53
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.5
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	99.32
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	99.15
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.15
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.13
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.11
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.23
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.79
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	97.29
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	96.81
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	92.53
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	91.78
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	90.19
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	87.28
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	83.46
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	82.2

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9.2e-40  Score=294.23  Aligned_cols=155  Identities=26%  Similarity=0.446  Sum_probs=142.5

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCC-CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN  286 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN  286 (392)
                      ++.+.+||++|+++|++++++||++.+.+ +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         2 ~~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPN   81 (165)
T 2ucz_A            2 SKTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPN   81 (165)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTT
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeCCCccCC
Confidence            46889999999999999999999999976 69999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846         287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL  366 (392)
Q Consensus       287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l  366 (392)
                      |+.+|+||+++|++...+.+..+.+.++|+|+++|++||+|  |+++|. +|+.++|+|.++               |++
T Consensus        82 v~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s--i~~ll~-~Pn~~~p~n~~a---------------a~~  143 (165)
T 2ucz_A           82 IYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS--VMSMLS-EPNIESGANIDA---------------CIL  143 (165)
T ss_dssp             BCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHH--HHHHHH-SCCGGGCCCHHH---------------HHH
T ss_pred             CCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHH--HHHHHh-CCCCCCchhHHH---------------HHH
Confidence            99999999999976544555555667899999999999998  999885 899999999776               999


Q ss_pred             HHhCHHHHHHHhcC
Q psy2846         367 ISSDQWRYFVLTRF  380 (392)
Q Consensus       367 ~~~d~~~y~~~~r~  380 (392)
                      |++|+++|...+|.
T Consensus       144 ~~~~~~~y~~~v~~  157 (165)
T 2ucz_A          144 WRDNRPEFERQVKL  157 (165)
T ss_dssp             HHTTHHHHHHHHHH
T ss_pred             HHHCHHHHHHHHHH
Confidence            99999999998874

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=1.3e-39  Score=292.88  Aligned_cols=154  Identities=26%  Similarity=0.490  Sum_probs=143.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      +.+.+||++|+++|++++++||++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNV   81 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNEENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFHPNI   81 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCCCCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCccCCC
Confidence            46899999999999999999999998776 99999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      +.+|+||+++|++...+....+.+.++|+|++||++||++  |+++|. +|+.++|+|.++               |++|
T Consensus        82 ~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~--i~~ll~-~pn~~~p~n~~a---------------a~~~  143 (164)
T 3h8k_A           82 YPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLS--VVSMLA-EPNDESGANVDA---------------SKMW  143 (164)
T ss_dssp             CTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHH--HHHHHH-SCCCSSCSSHHH---------------HHHH
T ss_pred             CCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHH--HHHHHc-CCCCCCccCHHH---------------HHHH
Confidence            9999999999986555666667778999999999999998  999885 999999999777               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|+..+|.
T Consensus       144 ~~~~~~f~~~~~~  156 (164)
T 3h8k_A          144 RDDREQFYKIAKQ  156 (164)
T ss_dssp             HHCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999998874

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=6.7e-39  Score=284.93  Aligned_cols=142  Identities=32%  Similarity=0.661  Sum_probs=135.9

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      ++.+.+||++|++++++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVGDDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVYHPNI   81 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcCCCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcccceE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      +.+|+||+++|.             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |++|
T Consensus        82 ~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~  130 (151)
T 4gpr_A           82 NKNGVICLDILK-------------DQWSPALTLSRVLLS--ISSLLT-DPNPSDPLDPEV---------------ANVL  130 (151)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-CCCTTSCSSHHH---------------HHHH
T ss_pred             CCCCEEEccccc-------------CCCCCCCcHHHHHHH--HHHHhc-CCCCCCchhHHH---------------HHHH
Confidence            999999999996             789999999999998  999985 999999999776               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       131 ~~d~~~f~~~ar~  143 (151)
T 4gpr_A          131 RANKKQFEDTARE  143 (151)
T ss_dssp             HHCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999998874

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=7.8e-39  Score=286.62  Aligned_cols=145  Identities=27%  Similarity=0.505  Sum_probs=137.9

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      ..++..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         8 ~~~s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   87 (158)
T 1zdn_A            8 ENLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   87 (158)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             cccCHHHHHHHHHHHHHHHhCCCCCEEEEECCCChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCccc
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846         285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA  364 (392)
Q Consensus       285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A  364 (392)
                      |||+.+|+||+++|.             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |
T Consensus        88 Pnv~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~--i~~ll~-~pn~~~p~n~~a---------------a  136 (158)
T 1zdn_A           88 PNVGANGEICVNVLK-------------RDWTAELGIRHVLLT--IKCLLI-HPNPESALNEEA---------------G  136 (158)
T ss_dssp             TTBCTTSBBCHHHHT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCGGGCSSHHH---------------H
T ss_pred             CCCCCCCEEehhhcC-------------CCCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH---------------H
Confidence            999999999999996             789999999999998  999885 999999999776               9


Q ss_pred             HHHHhCHHHHHHHhcC
Q psy2846         365 DLISSDQWRYFVLTRF  380 (392)
Q Consensus       365 ~l~~~d~~~y~~~~r~  380 (392)
                      ++|++|+++|...+|.
T Consensus       137 ~~~~~d~~~f~~~a~~  152 (158)
T 1zdn_A          137 RLLLENYEEYAARARL  152 (158)
T ss_dssp             HHHHHCHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHH
Confidence            9999999999998874

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=9e-39  Score=289.57  Aligned_cols=142  Identities=32%  Similarity=0.576  Sum_probs=134.8

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      ++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|+||||||
T Consensus         2 s~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~HPNI   81 (169)
T 1ayz_A            2 STPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNV   81 (169)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEecCCccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCccccccCCccCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      +.+|.||+++|.             ++|+|+++|.+||+|  |+++| ..|+.++|+|.++               |++|
T Consensus        82 ~~~G~ICl~iL~-------------~~WsP~~~i~~vL~s--i~~ll-~~Pn~~~P~n~~a---------------a~~~  130 (169)
T 1ayz_A           82 YANGEICLDILQ-------------NRWTPTYDVASILTS--IQSLF-NDPNPASPANVEA---------------ATLF  130 (169)
T ss_dssp             CTTSBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHH-TCCCCSSCSSHHH---------------HHHH
T ss_pred             CCCCeEeehhhc-------------cCCCCcCcHHHHHHH--HHHHH-hCCCCCcHHHHHH---------------HHHH
Confidence            999999999997             789999999999998  99988 4999999999776               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       131 ~~d~~~y~~~~r~  143 (169)
T 1ayz_A          131 KDHKSQYVKRVKE  143 (169)
T ss_dssp             HHCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999988774

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.3e-38  Score=287.79  Aligned_cols=145  Identities=37%  Similarity=0.644  Sum_probs=135.7

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      ....+.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~gi~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           16 NLYFQGALKRINKELNDLSKDPPTNCSAGPVGDDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             ---CTTHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cccCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence            35566789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846         285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA  364 (392)
Q Consensus       285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A  364 (392)
                      |||+.+|+||+++|+             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |
T Consensus        96 PNI~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~sll~-~pn~~~Pln~~a---------------a  144 (166)
T 2ayv_A           96 PNINSQGAICLDILK-------------DQWSPALTISKVLLS--ISSLLT-DPNPDDPLVPEI---------------A  144 (166)
T ss_dssp             TTBCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------H
T ss_pred             CcCCCCCeEEccccc-------------ccCCCCCcHHHHHHH--HHHHHh-CCCCCchhhHHH---------------H
Confidence            999999999999997             789999999999998  999985 999999999776               9


Q ss_pred             HHHHhCHHHHHHHhcC
Q psy2846         365 DLISSDQWRYFVLTRF  380 (392)
Q Consensus       365 ~l~~~d~~~y~~~~r~  380 (392)
                      ++|++|+++|...+|.
T Consensus       145 ~l~~~d~~~f~~~ar~  160 (166)
T 2ayv_A          145 HLYKSDRMRYDQTARE  160 (166)
T ss_dssp             HHHHHCHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHH
Confidence            9999999999988874

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=5.7e-39  Score=291.53  Aligned_cols=155  Identities=28%  Similarity=0.453  Sum_probs=113.2

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceeeeCC-CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP  285 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP  285 (392)
                      .++.+.+||++|+++|++++++||++.+.+ +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+||||
T Consensus        14 ~~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~HP   93 (172)
T 2awf_A           14 LVPRGSLLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHP   93 (172)
T ss_dssp             CCCTTHHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCT
T ss_pred             ChHHHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCccC
Confidence            457889999999999999999999999876 6999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846         286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD  365 (392)
Q Consensus       286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~  365 (392)
                      ||+.+|+||+++|++...+.+..+...++|+|+++|++||++  |+++| .+|+.++|+|.+|               |+
T Consensus        94 NV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~s--I~sll-~~Pn~~~p~n~~a---------------a~  155 (172)
T 2awf_A           94 NVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS--VISML-ADPNGDSPANVDA---------------AK  155 (172)
T ss_dssp             TBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHH--HHHHH-SCC---------------------------
T ss_pred             CCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHH--HHHHH-HCcCCCCccCHHH---------------HH
Confidence            999999999999985444444445567899999999999998  99988 5899999999877               99


Q ss_pred             HHHhCHH-HHHHHhc
Q psy2846         366 LISSDQW-RYFVLTR  379 (392)
Q Consensus       366 l~~~d~~-~y~~~~r  379 (392)
                      +|++|++ +|+..+|
T Consensus       156 ~~~~d~~~~f~~~vr  170 (172)
T 2awf_A          156 EWREDRNGEFKRKVA  170 (172)
T ss_dssp             ---------------
T ss_pred             HHHHCcHHHHHHHHH
Confidence            9999999 9998776

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=1.6e-38  Score=282.11  Aligned_cols=141  Identities=38%  Similarity=0.668  Sum_probs=134.4

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      ..+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         3 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   82 (150)
T 1z2u_A            3 HMALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   82 (150)
T ss_dssp             CHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECCCcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCcccCcCC
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      .+|+||+++|+             ++|+|+++|.+||++  |+++|. +|+.++|+|.++               |++|+
T Consensus        83 ~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~pn~~~p~n~~a---------------a~~~~  131 (150)
T 1z2u_A           83 SNGSICLDILR-------------SQWSPALTISKVLLS--ICSLLC-DPNPDDPLVPEI---------------ARIYK  131 (150)
T ss_dssp             TTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHHH
T ss_pred             CCCeEeecccc-------------CCCCCCCCHHHHHHH--HHHHhh-CCCCCCccCHHH---------------HHHHH
Confidence            99999999997             789999999999998  999985 999999999776               99999


Q ss_pred             hCHHHHHHHhcC
Q psy2846         369 SDQWRYFVLTRF  380 (392)
Q Consensus       369 ~d~~~y~~~~r~  380 (392)
                      +|+++|...+|.
T Consensus       132 ~~~~~f~~~~~~  143 (150)
T 1z2u_A          132 TDRERYNQLARE  143 (150)
T ss_dssp             HCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988874

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1.6e-38  Score=282.61  Aligned_cols=142  Identities=32%  Similarity=0.588  Sum_probs=134.9

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      ++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         2 s~~a~~RL~~E~~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv   81 (152)
T 2aak_A            2 STPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNI   81 (152)
T ss_dssp             CCHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTB
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEeCCCCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEecCcccCCC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      +.+|+||+++|.             ++|+|+++|.+||++  |+++| .+|+.++|+|.++               |++|
T Consensus        82 ~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll-~~p~~~~p~n~~a---------------a~~~  130 (152)
T 2aak_A           82 YADGSICLDILQ-------------NQWSPIYDVAAILTS--IQSLL-CDPNPNSPANSEA---------------ARMY  130 (152)
T ss_dssp             CTTSBBCCGGGT-------------TSCCTTCCHHHHHHH--HHHHH-TSCCTTSCSSHHH---------------HHHH
T ss_pred             CCCCEEechhhc-------------CCCCCCCcHHHHHHH--HHHHH-hCCCCCccccHHH---------------HHHH
Confidence            999999999997             789999999999998  99988 4999999999776               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       131 ~~~~~~y~~~~~~  143 (152)
T 2aak_A          131 SESKREYNRRVRD  143 (152)
T ss_dssp             HHCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999998874

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=2.9e-38  Score=285.16  Aligned_cols=144  Identities=36%  Similarity=0.655  Sum_probs=136.4

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP  285 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP  285 (392)
                      ...+.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus        15 ~~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~HP   94 (165)
T 2c4o_A           15 PRGSMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   94 (165)
T ss_dssp             -CCHHHHHHHHHHHHHHHSSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCBT
T ss_pred             cCCcHHHHHHHHHHHHHHhCCCCCEEEEEcCCCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcCC
Confidence            55678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846         286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD  365 (392)
Q Consensus       286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~  365 (392)
                      ||+.+|+||+++|+             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |+
T Consensus        95 nV~~~G~ICl~iL~-------------~~W~P~~ti~~vL~s--i~~ll~-~pn~~~P~n~~a---------------a~  143 (165)
T 2c4o_A           95 NINSNGSICLDILR-------------SQWSPALTISKVLLS--ICSLLC-DPNPDDPLVPEI---------------AR  143 (165)
T ss_dssp             TBCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---------------HH
T ss_pred             cCCCCCeEeehhhc-------------CCCCCcCcHHHHHHH--HHHHHh-CCCCCccccHHH---------------HH
Confidence            99999999999997             789999999999998  999885 999999999776               99


Q ss_pred             HHHhCHHHHHHHhcC
Q psy2846         366 LISSDQWRYFVLTRF  380 (392)
Q Consensus       366 l~~~d~~~y~~~~r~  380 (392)
                      +|++|+++|...+|.
T Consensus       144 ~~~~d~~~y~~~ar~  158 (165)
T 2c4o_A          144 IYKTDREKYNRIARE  158 (165)
T ss_dssp             HHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999998874

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=5.2e-39  Score=286.67  Aligned_cols=140  Identities=31%  Similarity=0.540  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      .+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus         5 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   84 (154)
T 2c2v_B            5 GLPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDK   84 (154)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCcccCcCcc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846         290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS  369 (392)
Q Consensus       290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~  369 (392)
                      +|+||+++|+             ++|+|+++|++||++  |+++| .+|+.++|+|.++               |++|++
T Consensus        85 ~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll-~~pn~~~p~n~~a---------------a~~~~~  133 (154)
T 2c2v_B           85 LGRICLDILK-------------DKWSPALQIRTVLLS--IQALL-SAPNPDDPLANDV---------------AEQWKT  133 (154)
T ss_dssp             TCBBCCHHHH-------------TSCCTTCCHHHHHHH--HHHHT-TSCCCCCC--CHH---------------HHHHHH
T ss_pred             CCeEEchhcc-------------CCCCCCCcHHHHHHH--HHHHH-hCCCCCCcccHHH---------------HHHHHH
Confidence            9999999996             789999999999998  99988 5999999999877               999999


Q ss_pred             CHHHHHHHhcC
Q psy2846         370 DQWRYFVLTRF  380 (392)
Q Consensus       370 d~~~y~~~~r~  380 (392)
                      |+++|...+|.
T Consensus       134 d~~~f~~~ar~  144 (154)
T 2c2v_B          134 NEAQAIETARA  144 (154)
T ss_dssp             HHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999988874

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.6e-38  Score=284.60  Aligned_cols=146  Identities=27%  Similarity=0.441  Sum_probs=136.1

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      ++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||
T Consensus         2 s~~~~~RL~kEl~~l~~~~~~gi~~~~~~~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPNv   81 (169)
T 1yh2_A            2 SMQRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNI   81 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCCccccC
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      +.+|+||+++|+..         ..++|+|+++|++||+|  |+++|. +|+.++|+|.++               |++|
T Consensus        82 ~~~G~iCl~iL~~~---------~~~~W~p~~~i~~vL~s--i~~ll~-~p~~~~p~n~~a---------------a~~~  134 (169)
T 1yh2_A           82 DSAGRICLDVLKLP---------PKGAWRPSLNIATVLTS--IQLLMS-EPNPDDPLMADI---------------SSEF  134 (169)
T ss_dssp             CTTCBBCCGGGSCT---------TTSCCCTTSCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHH
T ss_pred             CcCCeEecccccCC---------cccCCCCCCcHHHHHHH--HHHHHh-CCCCcchHhHHH---------------HHHH
Confidence            99999999999721         13789999999999998  999885 899999999776               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       135 ~~~~~~y~~~~r~  147 (169)
T 1yh2_A          135 KYNKPAFLKNARQ  147 (169)
T ss_dssp             HHCHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHH
Confidence            9999999988764

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=2.2e-38  Score=290.23  Aligned_cols=155  Identities=22%  Similarity=0.450  Sum_probs=130.7

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceee-eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQ-PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP  285 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~-p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP  285 (392)
                      +++.+.+||++||++|++++++||++. +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||
T Consensus         4 ~~~~a~kRL~kEl~~l~~~~~~gi~~~~~~~~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HP   83 (183)
T 3rz3_A            4 GSPSSQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHP   83 (183)
T ss_dssp             -CCHHHHHHHHHHHHHHHSCCTTEEEEECTTCCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCCT
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCEEEEecCccchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecCCCccC
Confidence            346789999999999999999999999 6778999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846         286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD  365 (392)
Q Consensus       286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~  365 (392)
                      ||+.+|+||+++|++..++.+..+...++|+|+++|++||++  |+++| .+|+.++|+|.+|               |+
T Consensus        84 nV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~s--i~~ll-~~Pn~~~p~n~~a---------------a~  145 (183)
T 3rz3_A           84 NIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLS--VISLL-NEPNTFSPANVDA---------------SV  145 (183)
T ss_dssp             TBCTTSBBCCTTC--------------CCCCTTCCHHHHHHH--HHHHH-HSCCCSSCSSHHH---------------HH
T ss_pred             CCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHH--HHHHH-hCCCCCCcccHHH---------------HH
Confidence            999999999999986555555555556899999999999998  99988 4999999999877               88


Q ss_pred             HHHh------CHHHHHHHhc
Q psy2846         366 LISS------DQWRYFVLTR  379 (392)
Q Consensus       366 l~~~------d~~~y~~~~r  379 (392)
                      +|++      |+++|...+|
T Consensus       146 ~~~~~~~~~~~~~~y~~~v~  165 (183)
T 3rz3_A          146 MYRKWKESKGKDREYTDIIR  165 (183)
T ss_dssp             HHHHHHHTTTCCCHHHHHHH
T ss_pred             HHHhcccccccHHHHHHHHH
Confidence            8887      6778876665

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=3.2e-38  Score=280.01  Aligned_cols=138  Identities=33%  Similarity=0.624  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCC
Q psy2846         212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHG  291 (392)
Q Consensus       212 ~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G  291 (392)
                      .+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.+|
T Consensus         3 ~~RL~kEl~~l~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~~G   82 (149)
T 2r0j_A            3 PRRITKETQNLANEPPPGIMAVPVPENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPNIDKLG   82 (149)
T ss_dssp             CHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCCCCCCC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCH
Q psy2846         292 DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQ  371 (392)
Q Consensus       292 ~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~  371 (392)
                      +||+++|+             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |++|++|+
T Consensus        83 ~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~~~~  131 (149)
T 2r0j_A           83 RICLDILK-------------DKWSPALQIRTVLLS--IQALLS-SPEPDDPLDSKV---------------AEHFKQDK  131 (149)
T ss_dssp             BBCCGGGT-------------TTCCTTSCHHHHHHH--HHHHHH-SCCTTSCSSCHH---------------HHHHHHCH
T ss_pred             EEechhcC-------------CCCCCCCcHHHHHHH--HHHHHh-CCCCCCchhHHH---------------HHHHHHCH
Confidence            99999997             789999999999998  999985 999999999877               99999999


Q ss_pred             HHHHHHhcC
Q psy2846         372 WRYFVLTRF  380 (392)
Q Consensus       372 ~~y~~~~r~  380 (392)
                      ++|...+|.
T Consensus       132 ~~f~~~~~~  140 (149)
T 2r0j_A          132 NDAEHVARQ  140 (149)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988874

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=3.5e-38  Score=284.20  Aligned_cols=145  Identities=27%  Similarity=0.505  Sum_probs=135.0

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceeeeCCC-----CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR  281 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~-----dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~  281 (392)
                      .+..+.+||++|+++|++++++||++.+.++     |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus         7 ~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t~   86 (163)
T 3rcz_B            7 HSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPP   86 (163)
T ss_dssp             --CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSC
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeCC
Confidence            3578999999999999999999999999765     89999999999999999999999999999999999999999999


Q ss_pred             cccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHH
Q psy2846         282 IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFT  361 (392)
Q Consensus       282 IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~  361 (392)
                      ||||||+.+|+||+++|+.           .++|+|+++|++||++  |+++| .+|+.++|+|.++             
T Consensus        87 i~HPnV~~~G~iCl~iL~~-----------~~~W~p~~ti~~vL~~--i~~ll-~~P~~~~p~n~~a-------------  139 (163)
T 3rcz_B           87 LFHPNVYPSGTVCLSILNE-----------EEGWKPAITIKQILLG--IQDLL-DDPNIASPAQTEA-------------  139 (163)
T ss_dssp             CCSTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHH--HHHHH-TSCCTTSCSCHHH-------------
T ss_pred             CccCCCCCCCcEeccccCC-----------CCCcCCcCcHHHHHHH--HHHHH-hCCCCCCccCHHH-------------
Confidence            9999999999999999972           2579999999999998  99999 5999999999777             


Q ss_pred             HHHHHHHhCHHHHHHHhcC
Q psy2846         362 IIADLISSDQWRYFVLTRF  380 (392)
Q Consensus       362 ~~A~l~~~d~~~y~~~~r~  380 (392)
                        |++|++|+++|...+|.
T Consensus       140 --a~~~~~d~~~y~~~~r~  156 (163)
T 3rcz_B          140 --YTMFKKDKVEYEKRVRA  156 (163)
T ss_dssp             --HHHHHHCHHHHHHHHHH
T ss_pred             --HHHHHHCHHHHHHHHHH
Confidence              99999999999998874

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=3.1e-38  Score=282.00  Aligned_cols=142  Identities=30%  Similarity=0.510  Sum_probs=134.0

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN  286 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN  286 (392)
                      +++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         6 ~~~~~~~RL~kEl~~l~~~~~~~i~~~p~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   85 (156)
T 2e2c_A            6 ERHSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPN   85 (156)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             cchHHHHHHHHHHHHHHhCCCCCEEEEECCCCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCcccCC
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846         287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL  366 (392)
Q Consensus       287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l  366 (392)
                      |+.+|.||+++|.             ++|+|+++|.+||++  |+++| .+|+.++|+|.++               |++
T Consensus        86 v~~~G~iCl~iL~-------------~~W~p~~~i~~vL~s--i~~ll-~~pn~~~p~n~~a---------------a~~  134 (156)
T 2e2c_A           86 VDQSGNICLDILK-------------ENWTASYDVRTILLS--LQSLL-GEPNNASPLNAQA---------------ADM  134 (156)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHT-TSCCCSSCSCHHH---------------HHH
T ss_pred             CccCceEECcccc-------------ccCCCCCcHHHHHHH--HHHHH-hCCCCCCHHHHHH---------------HHH
Confidence            9999999999997             789999999999998  99988 5999999999776               999


Q ss_pred             HHhCHHHHHHHhcC
Q psy2846         367 ISSDQWRYFVLTRF  380 (392)
Q Consensus       367 ~~~d~~~y~~~~r~  380 (392)
                      | +|+++|...+|.
T Consensus       135 ~-~d~~~y~~~~~~  147 (156)
T 2e2c_A          135 W-SNQTEYKKVLHE  147 (156)
T ss_dssp             T-TCHHHHHHHHHH
T ss_pred             h-cCHHHHHHHHHH
Confidence            9 899999988774

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=2.3e-38  Score=282.64  Aligned_cols=140  Identities=32%  Similarity=0.530  Sum_probs=133.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      .+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||||+.
T Consensus         5 ~~~~RL~kE~~~l~~~~~~~i~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~~   84 (155)
T 1jat_A            5 SLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDR   84 (155)
T ss_dssp             SCCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEECCCchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeecccccCCCCC
Confidence            45799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846         290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS  369 (392)
Q Consensus       290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~  369 (392)
                      +|+||+++|.             ++|+|+++|.+||++  |+++|. +|+.++|+|.++               |++|++
T Consensus        85 ~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~~  133 (155)
T 1jat_A           85 LGRICLDVLK-------------TNWSPALQIRTVLLS--IQALLA-SPNPNDPLANDV---------------AEDWIK  133 (155)
T ss_dssp             TCCBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSTTCCTT---------------HHHHHH
T ss_pred             CCEEEchhhc-------------cCCCCCCCHHHHHHH--HHHHHh-CCCCCCcccHHH---------------HHHHHH
Confidence            9999999996             789999999999998  999885 899999999988               999999


Q ss_pred             CHHHHHHHhcC
Q psy2846         370 DQWRYFVLTRF  380 (392)
Q Consensus       370 d~~~y~~~~r~  380 (392)
                      |+++|...+|.
T Consensus       134 ~~~~f~~~~r~  144 (155)
T 1jat_A          134 NEQGAKAKARE  144 (155)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999998874

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=2.3e-38  Score=280.77  Aligned_cols=139  Identities=31%  Similarity=0.531  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      +.+||++|+++|++++++||++.+.++ |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPni~~   81 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSSSCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTTBCS
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCCCcC
Confidence            579999999999999999999999887 9999999999999999999999999999999999999999999999999998


Q ss_pred             -CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         290 -HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       290 -~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                       +|.||+++|.             ++|+|+++|++||+|  |+++|. .|+.++|+|.++               |++|+
T Consensus        82 ~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~  130 (149)
T 1fxt_A           82 VTGAICLDILK-------------NAWSPVITLKSALIS--LQALLQ-SPEPNDPQDAEV---------------AQHYL  130 (149)
T ss_dssp             SSCCBCCHHHH-------------TSCCTTCCHHHHHHH--HHHHHH-SCCSSSCSSHHH---------------HHHHH
T ss_pred             CCCeEeCCcCC-------------CCCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH---------------HHHHH
Confidence             9999999996             789999999999998  999885 899999999776               99999


Q ss_pred             hCHHHHHHHhcC
Q psy2846         369 SDQWRYFVLTRF  380 (392)
Q Consensus       369 ~d~~~y~~~~r~  380 (392)
                      +|+++|...+|.
T Consensus       131 ~d~~~f~~~a~~  142 (149)
T 1fxt_A          131 RDRESFNKTAAL  142 (149)
T ss_dssp             HCSSHHHHHHHH
T ss_pred             HCHHHHHHHHHH
Confidence            999999988874

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=9.8e-38  Score=279.23  Aligned_cols=144  Identities=26%  Similarity=0.453  Sum_probs=133.5

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCC-----CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD-----NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI  282 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-----~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I  282 (392)
                      ++.+.+||++|+++|++++++||++.+.+     +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus         2 s~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   81 (157)
T 2gjd_A            2 SSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFPAGF   81 (157)
T ss_dssp             -CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECCTTC
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeeccCCC
Confidence            35789999999999999999999999864     4899999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHH
Q psy2846         283 FHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTI  362 (392)
Q Consensus       283 fHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~  362 (392)
                      |||||+.+|+||+++|+.           .++|+|+++|++||++  |+++| .+|+.++|+|.++              
T Consensus        82 ~HPnv~~~G~iCl~iL~~-----------~~~W~p~~~i~~vl~~--i~~ll-~~p~~~~p~n~~a--------------  133 (157)
T 2gjd_A           82 YHPNVYPSGTICLSILNE-----------DQDWRPAITLKQIVLG--VQDLL-DSPNPNSPAQEPA--------------  133 (157)
T ss_dssp             CCTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHH--HHHHH-TSCCTTCCCCHHH--------------
T ss_pred             ccCCCCCCCcEeeecccC-----------CCCCCCCCcHHHHHHH--HHHHH-hCCCCCCccCHHH--------------
Confidence            999999999999999972           2489999999999998  99998 5899999999777              


Q ss_pred             HHHHHHhCHHHHHHHhcC
Q psy2846         363 IADLISSDQWRYFVLTRF  380 (392)
Q Consensus       363 ~A~l~~~d~~~y~~~~r~  380 (392)
                       |++|++|+++|...+|.
T Consensus       134 -a~~~~~~~~~y~~~~~~  150 (157)
T 2gjd_A          134 -WRSFSRNKAEYDKKVLL  150 (157)
T ss_dssp             -HHHHHHCHHHHHHHHHH
T ss_pred             -HHHHHHCHHHHHHHHHH
Confidence             99999999999998874

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.7e-37  Score=277.99  Aligned_cols=143  Identities=28%  Similarity=0.535  Sum_probs=134.1

Q ss_pred             ccHHHHHHHHHHHHHhhcC---CCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLD---PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF  283 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~---~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If  283 (392)
                      |++.+.+||++|+++|+++   ++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         5 Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   84 (159)
T 2bep_A            5 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   84 (159)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCCCchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEEeeCCCC
Confidence            4567899999999999985   5889999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHH
Q psy2846         284 HPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTI  362 (392)
Q Consensus       284 HPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~  362 (392)
                      ||||+ .+|+||+++|+             ++|+|+++|.+||++  |+++|. .|+.++|+|.++              
T Consensus        85 HPni~~~~G~iCl~iL~-------------~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a--------------  134 (159)
T 2bep_A           85 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLS--LQALLA-AAEPDDPQDAVV--------------  134 (159)
T ss_dssp             BTTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH--------------
T ss_pred             ccCCCCCCCEEeChhhh-------------ccCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH--------------
Confidence            99999 59999999997             789999999999998  999985 999999999776              


Q ss_pred             HHHHHHhCHHHHHHHhcC
Q psy2846         363 IADLISSDQWRYFVLTRF  380 (392)
Q Consensus       363 ~A~l~~~d~~~y~~~~r~  380 (392)
                       |++|++|+++|...+|.
T Consensus       135 -a~~~~~~~~~f~~~a~~  151 (159)
T 2bep_A          135 -ANQYKQNPEMFKQTARL  151 (159)
T ss_dssp             -HHHHHHCHHHHHHHHHH
T ss_pred             -HHHHHHCHHHHHHHHHH
Confidence             99999999999998874

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.7e-38  Score=285.70  Aligned_cols=142  Identities=27%  Similarity=0.475  Sum_probs=132.8

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN  286 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN  286 (392)
                      +++.+.+||++||++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||||
T Consensus        27 ~~~~~~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPN  106 (179)
T 1i7k_A           27 ARGPVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN  106 (179)
T ss_dssp             ---CHHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred             cChHHHHHHHHHHHHHHhCCCCCEEEEEcCCcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCccCc
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846         287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL  366 (392)
Q Consensus       287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l  366 (392)
                      |+.+|+||+++|.             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |++
T Consensus       107 V~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~sll~-~Pn~~~Pln~~a---------------a~l  155 (179)
T 1i7k_A          107 VDTQGNISLDILK-------------EKWSALYDVRTILLS--IQSLLG-EPNIDSPLNTHA---------------AEL  155 (179)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHH
T ss_pred             cccCCeEEcccCc-------------CcCCCCCCHHHHHHH--HHHHHh-CCCCcchhhHHH---------------HHH
Confidence            9999999999997             789999999999998  999985 999999999776               999


Q ss_pred             HHhCHHHHHHHhcC
Q psy2846         367 ISSDQWRYFVLTRF  380 (392)
Q Consensus       367 ~~~d~~~y~~~~r~  380 (392)
                      | +|+++|...+|-
T Consensus       156 ~-~d~~~f~~~v~~  168 (179)
T 1i7k_A          156 W-KNPTAFKKYLQE  168 (179)
T ss_dssp             T-TSHHHHHHHHHH
T ss_pred             h-hCHHHHHHHHHH
Confidence            9 999999988763

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=8.7e-38  Score=283.21  Aligned_cols=144  Identities=28%  Similarity=0.461  Sum_probs=134.9

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      ..|++.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus        18 ~~M~~~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   97 (169)
T 1yrv_A           18 GSMHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH   97 (169)
T ss_dssp             TGGGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred             CccChHHHHHHHHHHHHHHhCCCCCEEEEEcCCccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence            35667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHH
Q psy2846         285 PNV-SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTII  363 (392)
Q Consensus       285 PNV-~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~  363 (392)
                      ||| +.+|+||+++|++           .++|+|+++|++||++  |+++| .+|+.++|+|.+|               
T Consensus        98 PNI~~~~G~ICL~iL~~-----------~~~WsP~~ti~~vL~s--I~sll-~~Pn~~~Pln~ea---------------  148 (169)
T 1yrv_A           98 PNVDPHTGQPCIDFLDN-----------PEKWNTNYTLSSILLA--LQVML-SNPVLENPVNLEA---------------  148 (169)
T ss_dssp             TTBCTTTCCBCCHHHHC-----------GGGCCTTCCHHHHHHH--HHHHH-TSCCTTSCSCHHH---------------
T ss_pred             CcccCCCCeEeehhhcC-----------CcCCCCcCCHHHHHHH--HHHHH-hCCCCCCchhHHH---------------
Confidence            999 7999999999962           2689999999999998  99988 4999999999776               


Q ss_pred             HHHHHhCHHHHHHH
Q psy2846         364 ADLISSDQWRYFVL  377 (392)
Q Consensus       364 A~l~~~d~~~y~~~  377 (392)
                      |++|++|+++|...
T Consensus       149 a~l~~~d~~~y~~~  162 (169)
T 1yrv_A          149 ARILVKDESLYRTI  162 (169)
T ss_dssp             HHHHHSCHHHHHHH
T ss_pred             HHHHHHCHHHHHHH
Confidence            99999999999865

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=2.5e-37  Score=277.66  Aligned_cols=146  Identities=26%  Similarity=0.453  Sum_probs=135.0

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCC-----CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLD-----NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFIT  280 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~-----~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T  280 (392)
                      .|++.+.+||++|+++|++++++||.+.+.+     +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus         3 ~M~~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   82 (161)
T 2grr_A            3 HMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEP   82 (161)
T ss_dssp             -CCHHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             cccHHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEec
Confidence            3567899999999999999999999998863     58999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhH
Q psy2846         281 RIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWF  360 (392)
Q Consensus       281 ~IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~  360 (392)
                      +||||||+.+|.||+++|+.           .++|+|+++|++||++  |+++|. +|+.++|+|.++            
T Consensus        83 ~i~HPnv~~~G~iCl~iL~~-----------~~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a------------  136 (161)
T 2grr_A           83 PLFHPNVYPSGTVCLSILEE-----------DKDWRPAITIKQILLG--IQELLN-EPNIQSPAQAEA------------  136 (161)
T ss_dssp             CCCSTTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH------------
T ss_pred             CcccCCCCCCCeEeehhcCC-----------CCCcCCCCcHHHHHHH--HHHHHh-CCCCCCccCHHH------------
Confidence            99999999999999999972           2589999999999998  999885 899999999777            


Q ss_pred             HHHHHHHHhCHHHHHHHhcC
Q psy2846         361 TIIADLISSDQWRYFVLTRF  380 (392)
Q Consensus       361 ~~~A~l~~~d~~~y~~~~r~  380 (392)
                         |++|++|+++|...+|.
T Consensus       137 ---a~~~~~~~~~y~~~~~~  153 (161)
T 2grr_A          137 ---YTIYCQNRVEYEKRVRA  153 (161)
T ss_dssp             ---HHHHHHCHHHHHHHHHH
T ss_pred             ---HHHHHHCHHHHHHHHHH
Confidence               99999999999998874

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=4.1e-37  Score=284.47  Aligned_cols=142  Identities=32%  Similarity=0.509  Sum_probs=135.3

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      .+.+.+||++||++|++++++||++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|+||||||
T Consensus        46 ~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~HPNV  125 (194)
T 3bzh_A           46 LSTSAKRIQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNI  125 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             ccHHHHHHHHHHHHHHhCCCCCceeecccCccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCccceE
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      +.+|.|||++|.             ++|+|+++|.+||++  |+++|. .|+.++|+|.++               |++|
T Consensus       126 ~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~~ll~-~pnp~~Pln~~a---------------a~l~  174 (194)
T 3bzh_A          126 NSQGVICLDILK-------------DNWSPALTISKVLLS--ICSLLT-DCNPADPLVGSI---------------ATQY  174 (194)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHH
T ss_pred             CCCCceechhhh-------------ccCCCcCcHHHHHHH--HHHHHh-CCCCccchhHHH---------------HHHH
Confidence            999999999997             789999999999998  999985 899999999776               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       175 ~~d~~~f~~~ar~  187 (194)
T 3bzh_A          175 MTNRAEHDRMARQ  187 (194)
T ss_dssp             HHCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999998874

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=2.4e-37  Score=285.88  Aligned_cols=143  Identities=32%  Similarity=0.570  Sum_probs=130.5

Q ss_pred             ccHHHHHHHHHHHHHhhcCCC-------------CCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCC
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPP-------------DGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP  273 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p-------------~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~P  273 (392)
                      ....+.+||++|+++|+++++             .||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++|
T Consensus        29 ~~~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~P  108 (193)
T 2f4z_A           29 GTPREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP  108 (193)
T ss_dssp             ---CHHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCCHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcCCCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCCCC
Confidence            345688999999999999987             7999999999999999999999999999999999999999999999


Q ss_pred             CcCcccccccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhh
Q psy2846         274 PKVKFITRIFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSV  352 (392)
Q Consensus       274 P~V~F~T~IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~  352 (392)
                      |+|+|.|+||||||+ .+|.|||++|+             ++|+|+++|++||++  |+++|. .|+.++|+|.++    
T Consensus       109 P~V~F~T~i~HPNI~~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~sll~-~pnp~~P~n~~a----  168 (193)
T 2f4z_A          109 PKMKFVTKIWHPNISSQTGAICLDILK-------------HEWSPALTIRTALLS--IQAMLA-DPVPTDPQDAEV----  168 (193)
T ss_dssp             CEEEESSCCCBTTBCTTTCBBCCGGGT-------------TTCCTTSCHHHHHHH--HHHHHH-SCCTTSCSCHHH----
T ss_pred             CeEEEecCCccCCCcCCCCEEECcccc-------------ccCCCCCCHHHHHHH--HHHHHh-CCCCCCcccHHH----
Confidence            999999999999999 69999999997             689999999999998  999985 899999999776    


Q ss_pred             hhhhhhhHHHHHHHHHhCHHHHHHHhcC
Q psy2846         353 SRACTRWFTIIADLISSDQWRYFVLTRF  380 (392)
Q Consensus       353 ~~~~~~w~~~~A~l~~~d~~~y~~~~r~  380 (392)
                                 |++|++|+++|...+|.
T Consensus       169 -----------a~l~~~d~~~f~~~ar~  185 (193)
T 2f4z_A          169 -----------AKMMIENHPLFVQTAKL  185 (193)
T ss_dssp             -----------HHHHHHCHHHHHHHHHH
T ss_pred             -----------HHHHHHCHHHHHHHHHH
Confidence                       99999999999998874

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=4.3e-37  Score=277.34  Aligned_cols=151  Identities=23%  Similarity=0.324  Sum_probs=136.9

Q ss_pred             ccccHHHHHHHHHHHHHhhcCCCCCceeeeC-CCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc
Q psy2846         205 QEDNTWRHFRLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF  283 (392)
Q Consensus       205 ~~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~-~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If  283 (392)
                      ....+.+.+||++||++|++++++||++.+. ++|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         9 ~~~~s~~~~RL~kEl~~l~~~~~~gi~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   87 (167)
T 3fn1_B            9 TRRVSVRDKLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIW   87 (167)
T ss_dssp             CCCCCHHHHHHHHHHHHHGGGSCTTEEEECSSSSCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCC
T ss_pred             ccchhHHHHHHHHHHHHHHhCCCCCEEEEeCCCCcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCcc
Confidence            4667899999999999999999999999864 57899999999 899999999999999999999999999999999999


Q ss_pred             cccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHH
Q psy2846         284 HPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTII  363 (392)
Q Consensus       284 HPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~  363 (392)
                      ||||+.+|+||+++|+..       +...++|+|+++|++||++  |+++|...|+.++|+|.++               
T Consensus        88 HPnv~~~G~iCl~iL~~~-------~~~~~~W~p~~~i~~vl~~--i~~ll~~~pn~~~p~n~ea---------------  143 (167)
T 3fn1_B           88 HPNITETGEICLSLLREH-------SIDGTGWAPTRTLKDVVWG--LNSLFTDLLNFDDPLNIEA---------------  143 (167)
T ss_dssp             CSSBCTTCCBCCGGGSBC-------SSSTTSBCTTCCHHHHHHH--HHHTTTTTCCSSSCSCHHH---------------
T ss_pred             cCCCCCCCEEechhhccC-------CCCCCCCCCcCcHHHHHHH--HHHHHcCCCCCCcchhHHH---------------
Confidence            999999999999999732       2345789999999999998  9998863379999999776               


Q ss_pred             HHHHHhCHHHHHHHhcC
Q psy2846         364 ADLISSDQWRYFVLTRF  380 (392)
Q Consensus       364 A~l~~~d~~~y~~~~r~  380 (392)
                      |++|++|+++|...+|.
T Consensus       144 a~~~~~~~~~f~~~~r~  160 (167)
T 3fn1_B          144 AEHHLRDKEDFRNKVDD  160 (167)
T ss_dssp             HHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHCHHHHHHHHHH
Confidence            99999999999998874

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=2.1e-37  Score=290.79  Aligned_cols=144  Identities=31%  Similarity=0.568  Sum_probs=135.6

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP  285 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP  285 (392)
                      ...+.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+||||
T Consensus        19 ~~~s~a~~RL~kEl~~l~~~~~~gi~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HP   98 (216)
T 2pwq_A           19 FQGSKELLRLQKELKDIENENVQEIDAHIKDSNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHP   98 (216)
T ss_dssp             CCSCHHHHHHHHHHHHHHHSCTTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             cccCHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcCC
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846         286 NVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA  364 (392)
Q Consensus       286 NV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A  364 (392)
                      ||+ .+|.|||++|+             ++|+|+++|.+||+|  |+++|. .|+.++|+|.++               |
T Consensus        99 NI~~~~G~ICL~iL~-------------~~WsP~~ti~~VL~s--I~sLL~-~Pnp~dPln~ea---------------a  147 (216)
T 2pwq_A           99 NISSQTGAICLDVLK-------------NEWSPALTIRTALLS--IQALLS-DPQPDDPQDAEV---------------A  147 (216)
T ss_dssp             TBCTTTCBBCCHHHH-------------HHCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------H
T ss_pred             CCcCCCCEEEchhhc-------------ccCCCCCcHHHHHHH--HHHHHh-CCCCCCcccHHH---------------H
Confidence            999 59999999997             679999999999998  999885 899999999766               9


Q ss_pred             HHHHhCHHHHHHHhcC
Q psy2846         365 DLISSDQWRYFVLTRF  380 (392)
Q Consensus       365 ~l~~~d~~~y~~~~r~  380 (392)
                      ++|++|+++|...+|.
T Consensus       148 ~~~~~d~~~f~~~ar~  163 (216)
T 2pwq_A          148 KMYKENHALFVKTASV  163 (216)
T ss_dssp             HHHHHCHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHH
Confidence            9999999999988874

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=5e-37  Score=284.74  Aligned_cols=142  Identities=28%  Similarity=0.546  Sum_probs=132.6

Q ss_pred             cHHHHHHHHHHHHHhhcC---CCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLD---PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~---~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      ++.+.+||++|+++|+++   ++.||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         3 s~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   82 (201)
T 3k9o_A            3 ANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWH   82 (201)
T ss_dssp             -CTTHHHHHHHHHHHHTCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccccccCccc
Confidence            356799999999999987   37899999999999999999999999999999999999999999999999999999999


Q ss_pred             cccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHH
Q psy2846         285 PNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTII  363 (392)
Q Consensus       285 PNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~  363 (392)
                      |||+ .+|.||+++|.             ++|+|+++|++||+|  |+++|. .|+.++|+|.++               
T Consensus        83 Pnv~~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~--i~~ll~-~p~p~~p~n~~a---------------  131 (201)
T 3k9o_A           83 PNISSVTGAICLDILK-------------DQWAAAMTLRTVLLS--LQALLA-AAEPDDPQDAVV---------------  131 (201)
T ss_dssp             TTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------
T ss_pred             CCCcCCCCeeeCcccc-------------cCCCCCCCHHHHHHH--HHHHhc-CCCCCCcccHHH---------------
Confidence            9999 59999999996             799999999999998  999985 999999999776               


Q ss_pred             HHHHHhCHHHHHHHhcC
Q psy2846         364 ADLISSDQWRYFVLTRF  380 (392)
Q Consensus       364 A~l~~~d~~~y~~~~r~  380 (392)
                      |++|++|+++|...+|.
T Consensus       132 a~~~~~~~~~f~~~a~~  148 (201)
T 3k9o_A          132 ANQYKQNPEMFKQTARL  148 (201)
T ss_dssp             HHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHCHHHHHHHHHH
Confidence            99999999999988873

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=6.9e-37  Score=272.89  Aligned_cols=140  Identities=29%  Similarity=0.503  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHHHhhcCCCCCcee-eeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQA-QPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v-~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      .+.+||++|+++|++++++||++ .+.++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnV~   82 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVD   82 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCCCchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCccCcCC
Confidence            46899999999999999999999 788899999999999 9999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      .+|.||+++|+            .++|+|+++|.+||++  |+++|. +|+.++|+|.++               |++|+
T Consensus        83 ~~G~iCl~iL~------------~~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~  132 (155)
T 1wzv_A           83 ENGQICLPIIS------------SENWKPCTKTCQVLEA--LNVLVN-RPNIREPLRMDL---------------ADLLT  132 (155)
T ss_dssp             TTCBCCCGGGC------------TTTCCTTCCHHHHHHH--HHHHHH-SCCSSSCSSHHH---------------HHHHH
T ss_pred             CCCeEeecCCC------------ccCCCCCCcHHHHHHH--HHHHHh-CCCCCchHHHHH---------------HHHHH
Confidence            99999999994            2789999999999998  999885 899999999776               99999


Q ss_pred             hCHHHHHHHhcC
Q psy2846         369 SDQWRYFVLTRF  380 (392)
Q Consensus       369 ~d~~~y~~~~r~  380 (392)
                      +|+++|...+|.
T Consensus       133 ~~~~~y~~~~r~  144 (155)
T 1wzv_A          133 QNPELFRKNAEE  144 (155)
T ss_dssp             HCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999999988774

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.5e-36  Score=272.49  Aligned_cols=140  Identities=21%  Similarity=0.409  Sum_probs=131.1

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceee-eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQ-PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN  286 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~-p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN  286 (392)
                      .+.+.+||++|+++|  ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         4 ~~~~~~RL~kEl~~l--~~~~~~~~~~~~~~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   80 (160)
T 1y8x_A            4 ASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPN   80 (160)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEeccCCccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCccCc
Confidence            357899999999999  578899998 7889999999998 999999999999999999999999999999999999999


Q ss_pred             ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHH
Q psy2846         287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADL  366 (392)
Q Consensus       287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l  366 (392)
                      |+.+|.||+++|+             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |++
T Consensus        81 v~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~--i~~ll~-~Pn~~~p~n~~a---------------a~~  129 (160)
T 1y8x_A           81 IDLEGNVCLNILR-------------EDWKPVLTINSIIYG--LQYLFL-EPNPEDPLNKEA---------------AEV  129 (160)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCCSSCSCHHH---------------HHH
T ss_pred             CCCCCeEEcccch-------------hhccCCCCHHHHHHH--HHHHHh-CCCCCCccCHHH---------------HHH
Confidence            9999999999997             789999999999998  999885 899999999776               999


Q ss_pred             HHhCHHHHHHHhcCC
Q psy2846         367 ISSDQWRYFVLTRFP  381 (392)
Q Consensus       367 ~~~d~~~y~~~~r~~  381 (392)
                      |++|+++|...+|.-
T Consensus       130 ~~~~~~~f~~~v~~~  144 (160)
T 1y8x_A          130 LQNNRRLFEQNVQRS  144 (160)
T ss_dssp             HHSCHHHHHHHHHHH
T ss_pred             HHHCHHHHHHHHHHH
Confidence            999999999998853

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=4.2e-36  Score=287.94  Aligned_cols=145  Identities=28%  Similarity=0.528  Sum_probs=136.1

Q ss_pred             ccccHHHHHHHHHHHHHhhcC---CCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846         205 QEDNTWRHFRLRKEYNDIKLD---PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR  281 (392)
Q Consensus       205 ~~~~s~a~kRL~kEl~~L~k~---~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~  281 (392)
                      ..+++.+.+||++||++|+++   ++.||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|+
T Consensus        52 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~  131 (253)
T 3e46_A           52 FDMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK  131 (253)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSTTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             ccccHHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence            356789999999999999987   47899999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhH
Q psy2846         282 IFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWF  360 (392)
Q Consensus       282 IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~  360 (392)
                      ||||||+ .+|.||+++|.             ++|+|+++|++||++  |+++|. .|+.++|+|.++            
T Consensus       132 i~HPNV~~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~~ll~-~pnp~~Pln~ea------------  183 (253)
T 3e46_A          132 IWHPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLS--LQALLA-AAEPDDPQDAVV------------  183 (253)
T ss_dssp             CCBTTBCTTTCBBCCGGGT-------------TCCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH------------
T ss_pred             CccCCccCCCCeeeccccc-------------CCCCCCCCHHHHHHH--HHHHhc-CCCCCChhhHHH------------
Confidence            9999999 59999999996             799999999999998  999985 999999999776            


Q ss_pred             HHHHHHHHhCHHHHHHHhcC
Q psy2846         361 TIIADLISSDQWRYFVLTRF  380 (392)
Q Consensus       361 ~~~A~l~~~d~~~y~~~~r~  380 (392)
                         |++|++|+++|...+|.
T Consensus       184 ---a~l~~~d~~~f~~~ar~  200 (253)
T 3e46_A          184 ---ANQYKQNPEMFKQTARL  200 (253)
T ss_dssp             ---HHHHHHCHHHHHHHHHH
T ss_pred             ---HHHHHHCHHHHHHHHHH
Confidence               99999999999998873

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=4.4e-36  Score=272.44  Aligned_cols=145  Identities=28%  Similarity=0.475  Sum_probs=130.7

Q ss_pred             cccHHHHHHHHHHHHHhhc-C-C------CC---Cceeee-CCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCC
Q psy2846         206 EDNTWRHFRLRKEYNDIKL-D-P------PD---GIQAQP-LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP  273 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k-~-~------p~---gI~v~p-~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~P  273 (392)
                      .|++.+.+||++||++|++ . +      +.   ++.+.+ .++|+++|+++|.||++|||+||.|+|+|.||++||++|
T Consensus         2 ~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~P   81 (172)
T 2y9m_A            2 AMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNP   81 (172)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             CCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCCCchhEEEEEEECCCCCcccCCEEEEEEECCCcCCCCC
Confidence            3457899999999999998 4 3      33   467778 778999999999999999999999999999999999999


Q ss_pred             CcCcccc-cccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhh
Q psy2846         274 PKVKFIT-RIFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCS  351 (392)
Q Consensus       274 P~V~F~T-~IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~  351 (392)
                      |+|+|.| +||||||+ .+|+||+++|+            .++|+|+++|++||++  |+++|. +|+.++|+|.++   
T Consensus        82 P~v~f~t~~i~HPni~~~~G~iCl~iL~------------~~~W~p~~~i~~vL~s--i~~ll~-~p~~~~p~n~~a---  143 (172)
T 2y9m_A           82 PKISFMQNNILHCNVKSATGEICLNILK------------PEEWTPVWDLLHCVHA--VWRLLR-EPVCDSPLDVDI---  143 (172)
T ss_dssp             CEEEECTTSCCCTTEETTTTEECCGGGS------------TTTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---
T ss_pred             CEEEEeeCCeecCCCcCCCCEEeccccC------------CCCCCCcCcHHHHHHH--HHHHHh-CCCCCCccCHHH---
Confidence            9999999 99999995 89999999996            4789999999999998  999885 999999999776   


Q ss_pred             hhhhhhhhHHHHHHHHHh-CHHHHHHHhcC
Q psy2846         352 VSRACTRWFTIIADLISS-DQWRYFVLTRF  380 (392)
Q Consensus       352 ~~~~~~~w~~~~A~l~~~-d~~~y~~~~r~  380 (392)
                                  |++|++ |+++|...+|.
T Consensus       144 ------------a~~~~~~d~~~f~~~~~~  161 (172)
T 2y9m_A          144 ------------GNIIRCGDMSAYQGIVKY  161 (172)
T ss_dssp             ------------HHHHTTTCHHHHHHHHHH
T ss_pred             ------------HHHHHhCCHHHHHHHHHH
Confidence                        999999 99999998874

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=8.3e-37  Score=286.53  Aligned_cols=140  Identities=31%  Similarity=0.520  Sum_probs=131.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCC-CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDN-KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~-dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      .+.+||++|+++|++++++||++.+.++ ++++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus         2 ~a~~RL~kEl~~l~~~~~~gi~~~p~~~~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPNI~   81 (215)
T 1tte_A            2 SRAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNIS   81 (215)
T ss_dssp             TTHHHHHHHHHHHHTTTCTTCEECCCSSSSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSSSC
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEECCCccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCcCc
Confidence            4689999999999999999999999876 567999999999999999999999999999999999999999999999999


Q ss_pred             C-CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         289 R-HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       289 ~-~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      . +|.||+++|+             ++|+|++||.+||+|  |+++|. .|+.++|+|.++               |++|
T Consensus        82 ~~~G~ICL~iL~-------------~~WsP~~ti~~VL~s--I~sLL~-~Pnp~~Pln~ea---------------a~~~  130 (215)
T 1tte_A           82 SVTGAICLDILR-------------NAWSPVITLKSALIS--LQALLQ-SPEPNDPQDAEV---------------AQHY  130 (215)
T ss_dssp             SSSSCCCSSTTT-------------CCSCTTCCHHHHHHH--HHHHHT-SCCCSSCSCHHH---------------HHHH
T ss_pred             CCCCEEECccCC-------------CCCCCcCcHHHHHHH--HHHHHh-CCCCCCccCHHH---------------HHHH
Confidence            8 9999999997             789999999999998  999884 899999999776               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       131 ~~d~~~f~~~ar~  143 (215)
T 1tte_A          131 LRDRESFNKTAAL  143 (215)
T ss_dssp             HHCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999988874

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.3e-36  Score=274.57  Aligned_cols=141  Identities=21%  Similarity=0.412  Sum_probs=132.3

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceee-eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQ-PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~-p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      ...+.+.+||++|+++|  ++++|+++. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus        22 ~~~~~~~~RL~kEl~~l--~~~~~i~~~~p~~~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i~H   98 (180)
T 2nvu_C           22 KKASAAQLRIQKDINEL--NLPKTCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   98 (180)
T ss_dssp             CSCCHHHHHHHHHHHTC--CCCTTEEEECSSTTCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CCccHHHHHHHHHHHhc--CCCCCeEEEecccccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccCcc
Confidence            45678999999999999  578899998 7889999999998 9999999999999999999999999999999999999


Q ss_pred             ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846         285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA  364 (392)
Q Consensus       285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A  364 (392)
                      |||+.+|.||+++|+             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |
T Consensus        99 PNV~~~G~iCl~iL~-------------~~W~p~~~i~~vL~s--i~~ll~-~Pn~~~p~n~~a---------------a  147 (180)
T 2nvu_C           99 PNIDLEGNVALNILR-------------EDWKPVLTINSIIYG--LQYLFL-EPNPEDPLNKEA---------------A  147 (180)
T ss_dssp             TTBCTTSBBCCGGGT-------------TSCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---------------H
T ss_pred             CCCCCCCcEEccccc-------------ccCCCCCCHHHHHHH--HHHHHh-CCCCCCccCHHH---------------H
Confidence            999999999999997             789999999999998  999885 899999999777               9


Q ss_pred             HHHHhCHHHHHHHhcC
Q psy2846         365 DLISSDQWRYFVLTRF  380 (392)
Q Consensus       365 ~l~~~d~~~y~~~~r~  380 (392)
                      ++|++|+++|...+|.
T Consensus       148 ~~~~~d~~~f~~~v~~  163 (180)
T 2nvu_C          148 EVLQNNRRLFEQNVQR  163 (180)
T ss_dssp             HHHHHCHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHH
Confidence            9999999999998875

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=3.4e-36  Score=268.12  Aligned_cols=140  Identities=26%  Similarity=0.460  Sum_probs=128.6

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeee-CCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQP-LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p-~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      .+.+||++|+++|++++++|+.+.+ .++|+++|+++|. |++|||+||.|+++|.||++||++||+|+|.|+||||||+
T Consensus         2 ~a~~RL~kEl~~l~~~~~~~~~~~~~~~~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPnv~   80 (154)
T 1c4z_D            2 AASRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   80 (154)
T ss_dssp             --CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHhCCCCCEEEeeCCCCchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCccccCC
Confidence            3568999999999999999998655 6789999999998 9999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      .+|+||+++|+            .++|+|+++|.+||+|  |+++|. +|+.++|+|.++               |++|+
T Consensus        81 ~~G~iCl~iL~------------~~~W~p~~~i~~vl~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~  130 (154)
T 1c4z_D           81 EKGQVCLPVIS------------AENWKPATKTDQVIQS--LIALVN-DPQPEHPLRADL---------------AEEYS  130 (154)
T ss_dssp             TTCBBCCTTTS------------SSSCCTTCCHHHHHHH--HHHHHH-SCCCSSCSCHHH---------------HHHHH
T ss_pred             CCCEEECCCCC------------CCCCCCCCcHHHHHHH--HHHHHc-CCCCCchhhHHH---------------HHHHH
Confidence            99999999996            3789999999999998  999885 999999999776               99999


Q ss_pred             hCHHHHHHHhcC
Q psy2846         369 SDQWRYFVLTRF  380 (392)
Q Consensus       369 ~d~~~y~~~~r~  380 (392)
                      +|+++|...+|.
T Consensus       131 ~~~~~f~~~~~~  142 (154)
T 1c4z_D          131 KDRKKFCKNAEE  142 (154)
T ss_dssp             TCSSTTHHHHHH
T ss_pred             HhHHHHHHHHHH
Confidence            999999988774

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=4.1e-36  Score=267.63  Aligned_cols=137  Identities=20%  Similarity=0.410  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc-C
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS-R  289 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~-~  289 (392)
                      +.+||++|+++++++   |+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+ .
T Consensus         3 a~~Rl~kEl~~l~~~---~~~v~~~~~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~   79 (152)
T 2onu_A            3 SLTRKQCDFTKLIMA---GYDLELNNGSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEA   79 (152)
T ss_dssp             CCCHHHHTHHHHHHH---TCCEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred             HHHHHHHHHHhcCcC---CCEEEEccCccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCcCcCc
Confidence            468999999999874   788999999999999999999999999999999999999999999999999999999999 5


Q ss_pred             CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846         290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS  369 (392)
Q Consensus       290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~  369 (392)
                      +|.||+++|+             ++|+|+++|++||++ .|++|| .+|+.++|+|.++               |++|++
T Consensus        80 ~G~iCl~il~-------------~~W~p~~~i~~vl~~-ii~~Ll-~~Pn~~~P~n~~a---------------a~~~~~  129 (152)
T 2onu_A           80 SGSVCLDVIN-------------QTWTPLYSLVNVFEV-FLPQLL-TYPNPSDPLNSDA---------------ASLLMK  129 (152)
T ss_dssp             TCBBCHHHHH-------------HHCCTTCCHHHHHHT-HHHHHH-HSCCCSSCSSHHH---------------HHHHHH
T ss_pred             CCeEeccccc-------------ccCCCCCCHHHHHHH-HHHHHH-hCCCCCCcccHHH---------------HHHHHH
Confidence            9999999996             689999999999997 256777 5999999999776               999999


Q ss_pred             CHHHHHHHhcC
Q psy2846         370 DQWRYFVLTRF  380 (392)
Q Consensus       370 d~~~y~~~~r~  380 (392)
                      |+++|...+|.
T Consensus       130 d~~~y~~~v~~  140 (152)
T 2onu_A          130 DKNIYEEKVKE  140 (152)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999988874

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=5.5e-35  Score=269.37  Aligned_cols=142  Identities=22%  Similarity=0.405  Sum_probs=132.5

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceee----eCCCCcc---EEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQ----PLDNKRC---HWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKF  278 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~----p~~~dl~---~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F  278 (392)
                      ...+.+.+||++||++|+  +++|+++.    +.++|++   +|+++|. |++|||+||.|+++|.||++||++||+|+|
T Consensus        25 ~~~s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~f  101 (190)
T 3o2u_A           25 PNLSAARIRLKRDLDSLD--LPPTVTLNVITSPDSADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVVC  101 (190)
T ss_dssp             CCCCHHHHHHHHHHHTCC--CCTTEEEEEEECTTCCCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEEE
T ss_pred             CCccHHHHHHHHHHHhcc--CCCCEEEEecCCCCCccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeEE
Confidence            445789999999999999  78899998    8889999   9999997 888999999999999999999999999999


Q ss_pred             ccccccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhh
Q psy2846         279 ITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTR  358 (392)
Q Consensus       279 ~T~IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~  358 (392)
                      .|+||||||+.+|.||+++|.             ++|+|+++|++||++  |+++|. +|+.++|+|.++          
T Consensus       102 ~t~i~HPnV~~~G~iCl~iL~-------------~~W~p~~~i~~vL~~--i~~ll~-~pn~~~pln~~a----------  155 (190)
T 3o2u_A          102 LKKIFHPNIDLKGNVCLNILR-------------EDWSPALDLQSIITG--LLFLFL-EPNPNDPLNKDA----------  155 (190)
T ss_dssp             CSCCCCTTBCTTSBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH----------
T ss_pred             ecCcccCCCCCCCeEechhcc-------------CCCCCCCCHHHHHHH--HHHHHh-CCCCCcchhHHH----------
Confidence            999999999999999999997             799999999999998  999885 999999999776          


Q ss_pred             hHHHHHHHHHhCHHHHHHHhcCC
Q psy2846         359 WFTIIADLISSDQWRYFVLTRFP  381 (392)
Q Consensus       359 w~~~~A~l~~~d~~~y~~~~r~~  381 (392)
                           |++|++|+++|...+|.-
T Consensus       156 -----a~~~~~d~~~f~~~ar~~  173 (190)
T 3o2u_A          156 -----AKLLCEGEKEFAEAVRLT  173 (190)
T ss_dssp             -----HHHHHTCHHHHHHHHHHH
T ss_pred             -----HHHHHHCHHHHHHHHHHH
Confidence                 999999999999998853

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=1.2e-35  Score=268.24  Aligned_cols=145  Identities=14%  Similarity=0.275  Sum_probs=131.4

Q ss_pred             ccHHHHHHHHHHHHHhhcCC------------CCCceeeeCCCCccEEEEEEecCCCCCCC--CcEEEEEEEeCCCCCCC
Q psy2846         207 DNTWRHFRLRKEYNDIKLDP------------PDGIQAQPLDNKRCHWMATIAGPVASPYE--GGVFYLYIRIPFSYPMH  272 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~------------p~gI~v~p~~~dl~~W~v~I~GP~~TPYe--gG~F~~~I~fP~dYP~~  272 (392)
                      |++.+.+||++|+++|++++            +.+|.+.+.++|+++|+++|.||++|||+  ||.|++.|.||++||++
T Consensus         5 Ms~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp~~YP~~   84 (167)
T 4ds2_A            5 MKNISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDTDTIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHE   84 (167)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEESSTTEEEEEEECCTTSGGGTTCCEEEEEEECCTTTTTS
T ss_pred             ccHHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCCCcccEEEEEEECCCCCCccCCCCEEEEEEECCCCCCCC
Confidence            44567899999999999987            77899999999999999999999999999  99999999999999999


Q ss_pred             CCcCccccccccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhc-CCCCCCCCCchhhhh
Q psy2846         273 PPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQR-RPRVRFPLDDLSLCS  351 (392)
Q Consensus       273 PP~V~F~T~IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~-~P~~~~Pln~~a~~~  351 (392)
                      ||+|+|.|+||||||+.+|+||+++|.             ++|+|+++|++||++ .|++++.. .|+.++|+|.+|   
T Consensus        85 pP~v~f~t~i~HPnv~~~G~iCl~il~-------------~~W~p~~~i~~vll~-~l~~l~~~~~pn~~~p~n~ea---  147 (167)
T 4ds2_A           85 PPTVRFVTPVYSPLVTGEGGICDRMVN-------------DFWTPDQHASDVIKL-VLDRVFSQYKSRRDDDVNPEA---  147 (167)
T ss_dssp             CCEEEESSCCCCSSCCTTSCCCTHHHH-------------TTCCTTSCHHHHHHH-HHHHHHTSTTSCCSCCCCHHH---
T ss_pred             CCEEEEeCCcccccCCCCCEEEcccCc-------------CCCCCCCChHHHHHH-HHHHHHhcCCCCCcchHhHHH---
Confidence            999999999999999999999999996             799999999998765 26666642 489999999776   


Q ss_pred             hhhhhhhhHHHHHHHHHhCHHHHHHHhcC
Q psy2846         352 VSRACTRWFTIIADLISSDQWRYFVLTRF  380 (392)
Q Consensus       352 ~~~~~~~w~~~~A~l~~~d~~~y~~~~r~  380 (392)
                                  |++|++|+++|+..+|.
T Consensus       148 ------------a~l~~~d~~~f~~~vrr  164 (167)
T 4ds2_A          148 ------------RHYLEKFPQDFAARVRR  164 (167)
T ss_dssp             ------------HHHHHHCHHHHHHHHTT
T ss_pred             ------------HHHHHHCHHHHHHHHhh
Confidence                        99999999999999873

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.7e-34  Score=292.54  Aligned_cols=141  Identities=38%  Similarity=0.673  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      +.+.+||++|+++|++++++||++.|.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv~   81 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNIN   81 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCCTTBC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcCCcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccccccC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      .+|.||+++|.             ++|+|++||++||+|  |+++|. +|+.++|+|.++               |++|+
T Consensus        82 ~~G~iCl~il~-------------~~W~p~~~i~~vL~~--i~~ll~-~pnp~~p~n~~a---------------a~~~~  130 (399)
T 4ddg_A           82 SNGSISLDILR-------------SQWSPALTISKVLLS--ICSLLC-DPNPDDPLVPEI---------------ARIYK  130 (399)
T ss_dssp             TTCBBCCGGGT-------------TSCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---------------HHHHH
T ss_pred             CCCeEeCcccc-------------cCCCccccHHHHHHH--HHHHHc-CCCCCchhhHHH---------------HHHHH
Confidence            99999999996             789999999999998  999985 999999999776               99999


Q ss_pred             hCHHHHHHHhcC
Q psy2846         369 SDQWRYFVLTRF  380 (392)
Q Consensus       369 ~d~~~y~~~~r~  380 (392)
                      +|+++|...+|.
T Consensus       131 ~d~~~y~~~~~~  142 (399)
T 4ddg_A          131 TDREKYNRIARE  142 (399)
T ss_dssp             HCHHHHHHHHHH
T ss_pred             HCHHHHHHHHHH
Confidence            999999998874

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-34  Score=250.16  Aligned_cols=116  Identities=22%  Similarity=0.399  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc-ccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI-FHPNV  287 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I-fHPNV  287 (392)
                      +.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ |||||
T Consensus         5 ~~a~~RL~kEl~~l~~~~~~~~~~~~~~~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPnv   84 (125)
T 2fo3_A            5 GNANYRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHV   84 (125)
T ss_dssp             ----CHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCcchhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCCCcC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999997 99999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCC
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRV  340 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~  340 (392)
                      +.+|+||+++|+             ++|+|+++|++||+|  |+++|. +|+.
T Consensus        85 ~~~G~iCl~iL~-------------~~W~P~~~i~~vl~s--i~~ll~-~p~~  121 (125)
T 2fo3_A           85 YSNGDICLSLLG-------------DDYNPSLSISGLVLS--IISMLS-SAKE  121 (125)
T ss_dssp             CTTSBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHC-----
T ss_pred             CCCCEEEchhcC-------------CCCCCCCcHHHHHHH--HHHHHh-Cccc
Confidence            999999999996             789999999999998  999885 5554

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.5e-35  Score=267.77  Aligned_cols=137  Identities=23%  Similarity=0.387  Sum_probs=126.7

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      .+.+||++||++|++   +|+++.+. +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus        25 ~a~~RL~kEl~~l~~---~g~~v~~~-ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t~i~HPNV~~  100 (179)
T 2z5d_A           25 PGKRRMDTDVIKLIE---SKHEVTIL-GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDE  100 (179)
T ss_dssp             HHHHHHHHHHHHHHH---SSSCEEEE-EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHhcCc---CCCEEEEC-CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEecCCccCcCCC
Confidence            689999999999985   57888887 67899999999999999999999999999999999999999999999999998


Q ss_pred             -CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         290 -HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       290 -~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                       +|.||+++|+             ++|+|+++|++||++ .|+++| .+|+.++|+|.++               |++|+
T Consensus       101 ~~G~ICL~iL~-------------~~WsP~~ti~~iL~s-~I~~Ll-~~Pn~~~p~n~ea---------------a~~~~  150 (179)
T 2z5d_A          101 ASGTVCLDVIN-------------QTWTALYDLTNIFES-FLPQLL-AYPNPIDPLNGDA---------------AAMYL  150 (179)
T ss_dssp             TTCBBCHHHHH-------------HHCCTTCCTTHHHHT-HHHHHH-HSCCCSSCSCHHH---------------HHHHH
T ss_pred             CCCeEeccccc-------------cCCCCCCCHHHHHHH-HHHHHH-hCCCCCCccCHHH---------------HHHHH
Confidence             9999999996             689999999999996 378877 5999999999777               99999


Q ss_pred             hCHHHHHHHhcC
Q psy2846         369 SDQWRYFVLTRF  380 (392)
Q Consensus       369 ~d~~~y~~~~r~  380 (392)
                      +|+++|...+|.
T Consensus       151 ~d~~~y~~~vr~  162 (179)
T 2z5d_A          151 HRPEEYKQKIKE  162 (179)
T ss_dssp             HCHHHHHHHHHH
T ss_pred             HCHHHHHHHHHH
Confidence            999999988874

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=2.5e-34  Score=258.56  Aligned_cols=130  Identities=23%  Similarity=0.377  Sum_probs=119.3

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCC-ceeee-CCCC--ccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDG-IQAQP-LDNK--RCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR  281 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~g-I~v~p-~~~d--l~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~  281 (392)
                      .+...|.+||++|+++|++++++| +++.+ .++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+
T Consensus        21 ~v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~  100 (160)
T 2a4d_A           21 GVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTK  100 (160)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBC
T ss_pred             eeechHHHHHHHHHHHHHhCCCCCcEEEEecCCccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecC
Confidence            456889999999999999999988 67776 4454  9999999999999999999999999999999999999999999


Q ss_pred             ccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846         282 IFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS  348 (392)
Q Consensus       282 IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a  348 (392)
                      ||||||+ .+|+||+++|+.           .++|+|+++|++||++  |+++|.++|+.++|+|.++
T Consensus       101 i~HPNV~~~~G~ICl~iL~~-----------~~~WsP~~ti~~vL~s--I~~ll~~~pn~~~P~n~ea  155 (160)
T 2a4d_A          101 INMNGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQE--LRRLMMSKENMKLPQPPEG  155 (160)
T ss_dssp             CCCTTBCTTTCBBCGGGSHH-----------HHTCCTTCCHHHHHHH--HHHHHTSTTTTTCCCCCTT
T ss_pred             ceeCCEECCCCEEehhhcCC-----------ccCCCccCcHHHHHHH--HHHHHccCCCCCCCCChhh
Confidence            9999999 699999999861           1689999999999998  9999988999999999887

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=8.5e-35  Score=264.04  Aligned_cols=136  Identities=26%  Similarity=0.461  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc-
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS-  288 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~-  288 (392)
                      .+.+||++|+++|++++. ++   +.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+ 
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HPNi~~   87 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPSDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDE   87 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EECSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCCCCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccccCcc
Confidence            678999999999999874 43   3578999999999999999999999999999999999999999999999999999 


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHH-HHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSI-RDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~I-qslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      .+|+||+++|+             ++|+|+++|++||++  | +++| ++|+.++|+|.++               |++|
T Consensus        88 ~~G~iCl~iL~-------------~~W~p~~~i~~vL~s--il~~ll-~~Pn~~~p~n~~a---------------a~~~  136 (171)
T 1yf9_A           88 RSGSVCLDVIN-------------QTWTPMYQLENIFDV--FLPQLL-RYPNPSDPLNVQA---------------AHLL  136 (171)
T ss_dssp             TTCBBCHHHHH-------------HHCCTTCCTHHHHHT--HHHHHH-HSCCSSCCSCHHH---------------HHHH
T ss_pred             cCCeEeccccc-------------cCCCCCCcHHHHHHH--HHHHHH-hCCCCCCcccHHH---------------HHHH
Confidence            59999999996             689999999999998  6 6766 5999999999776               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       137 ~~d~~~y~~~vr~  149 (171)
T 1yf9_A          137 HADRVGFDALLRE  149 (171)
T ss_dssp             HHCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999988774

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=1.1e-34  Score=259.71  Aligned_cols=127  Identities=24%  Similarity=0.327  Sum_probs=117.5

Q ss_pred             ccccHHHHHHHHHHHHHhhcC-CCCCceeeeCC-C--CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846         205 QEDNTWRHFRLRKEYNDIKLD-PPDGIQAQPLD-N--KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFIT  280 (392)
Q Consensus       205 ~~~~s~a~kRL~kEl~~L~k~-~p~gI~v~p~~-~--dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T  280 (392)
                      ..+...|.+||++|+++|+++ +++||++.+.+ +  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|
T Consensus        16 ~~~~~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t   95 (156)
T 2q0v_A           16 FQGIVPRSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDT   95 (156)
T ss_dssp             CSSCCCHHHHHHHHHHHHHCC-CCTTEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESB
T ss_pred             CcccchHHHHHHHHHHHHHhCCCCCCeEEEECCCccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEc
Confidence            456688999999999999999 78899998853 3  5999999999999999999999999999999999999999999


Q ss_pred             ccccccccCCCce---eccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846         281 RIFHPNVSRHGDL---SHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS  348 (392)
Q Consensus       281 ~IfHPNV~~~G~V---CL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a  348 (392)
                      +||||||+.+|+|   |+++|+              +|+|+++|++||+|  |+++| .+|+.++|++.++
T Consensus        96 ~i~HPNV~~~G~icisCL~iL~--------------~WsP~~ti~~vL~s--I~~ll-~~Pn~~~p~n~~a  149 (156)
T 2q0v_A           96 KIEMSCVDNCGRVIKNNLHILK--------------NWNRNYTIETILIS--LRQEM-LSSANKRLPQPNE  149 (156)
T ss_dssp             CCCCTTBCTTSBBCGGGSHHHH--------------TCCTTCCHHHHHHH--HHHHT-TSTTTTTCCCCCT
T ss_pred             ccccCCCccCCeEehhhccccc--------------CCCCcCcHHHHHHH--HHHHH-hCCCCCCcCChHH
Confidence            9999999999999   888875              59999999999998  99988 5999999999988

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.5e-34  Score=249.13  Aligned_cols=117  Identities=21%  Similarity=0.392  Sum_probs=110.1

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc-cccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI-FHPN  286 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I-fHPN  286 (392)
                      .+.+.+||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ ||||
T Consensus        18 ~~~~~~RL~kEl~~l~~~~~~~~~~~~~~~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~HPn   97 (136)
T 2h2y_A           18 LGNANYRIQKELNNFLKNPPINCTIDVHPSNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPKHTH   97 (136)
T ss_dssp             TTSHHHHHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCCTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCeEEEeccccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCCCCc
Confidence            346889999999999999999999999999999999999999999999999999999999999999999999996 9999


Q ss_pred             ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCC
Q psy2846         287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRV  340 (392)
Q Consensus       287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~  340 (392)
                      |+.+|+||+++|+             ++|+|+++|++||+|  |+++|. +|+.
T Consensus        98 v~~~G~ICl~iL~-------------~~WsP~~ti~~vL~s--i~sll~-~p~~  135 (136)
T 2h2y_A           98 VYSNGDICLSVLG-------------DDYNPSLSISGLILS--IISMLS-SAKE  135 (136)
T ss_dssp             BCTTCCBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHS-SSCC
T ss_pred             CCCCCEEECcccc-------------CCCCCCCcHHHHHHH--HHHHHh-CcCc
Confidence            9999999999997             789999999999998  999884 5543

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=256.78  Aligned_cols=129  Identities=23%  Similarity=0.382  Sum_probs=118.0

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCC-ceeee-CCCC--ccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDG-IQAQP-LDNK--RCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI  282 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~g-I~v~p-~~~d--l~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I  282 (392)
                      +.+.|.+||++|+++|++++++| +++.+ .++|  +++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|
T Consensus        32 v~~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i  111 (170)
T 2hlw_A           32 VKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKI  111 (170)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCGGGCEEEEESSTTCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCC
T ss_pred             ccCHHHHHHHHHHHHHHhCCCCCcEEEEecCcccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEeccc
Confidence            45678999999999999999888 67776 4454  99999999999999999999999999999999999999999999


Q ss_pred             cccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846         283 FHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS  348 (392)
Q Consensus       283 fHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a  348 (392)
                      |||||+ .+|+||+++|+.           .++|+|+++|++||++  |+++|.+.|+.++|+|.++
T Consensus       112 ~HPNV~~~~G~ICl~iL~~-----------~~~WsP~~ti~~vL~s--I~~ll~~~pn~~~P~n~ea  165 (170)
T 2hlw_A          112 NMNGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQE--LRRLMMSKENMKLPQPPEG  165 (170)
T ss_dssp             CCSSBCSSSCBBCTTTCHH-----------HHTCCSSCCHHHHHHH--HHHHHHSTTTSSSCCCSSC
T ss_pred             ccCCEeCCCCEEEhhhcCC-----------CCCCCccCcHHHHHHH--HHHHHccCCCCCCCCCccc
Confidence            999999 799999999861           1689999999999998  9999988899999999887

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=2.3e-33  Score=276.78  Aligned_cols=135  Identities=23%  Similarity=0.367  Sum_probs=121.7

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCC----ceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDG----IQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITR  281 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~g----I~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~  281 (392)
                      .+++.+.+||++|+++|++++|+|    +.+.+.++|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|+
T Consensus        72 ~~s~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~ednl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T~  151 (323)
T 3ceg_A           72 ANSAARARRLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETT  151 (323)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCCCCSSCCEEEEEESSCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECCS
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCcccceeecccCCCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEecc
Confidence            567899999999999999998875    4566788999999999999999999999999999999999999999999999


Q ss_pred             -----cccccccCCCceeccCCCCcccccCCCCcCCCCCcccc-cHHHHHhHHHHHHHHh-cCCCCCCCCCchh
Q psy2846         282 -----IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRH-RLYSILFSNSIRDHIQ-RRPRVRFPLDDLS  348 (392)
Q Consensus       282 -----IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~-sI~sILlS~~IqslL~-~~P~~~~Pln~~a  348 (392)
                           ||||||+.+|+|||++|++      +.+...++|+|++ +|++||+|  |+++|. .+|+.++|++.++
T Consensus       152 ~g~~~ifHPNV~~~G~ICLsiL~~------~~g~~~e~WsPa~stI~~VLls--IqsLL~~~~Pn~~dP~~~~a  217 (323)
T 3ceg_A          152 GGHSVRFNPNLYNDGKVCLSILNT------WHGRPEEKWNPQTSSFLQVLVS--VQSLILVAEPYFNEPGYERS  217 (323)
T ss_dssp             TTTTCCCBTTBCTTCBBCCGGGTS------SCCCGGGSCCTTTCCHHHHHHH--HHHHTSCSSGGGGSTTGGGG
T ss_pred             CCCcccccCCCCcCCeEechhhcc------ccCCCcCCCCcCcCCHHHHHHH--HHHHHcCCCCCCCCccCHHH
Confidence                 9999999999999999973      3344568999999 89999998  999985 6888899998765

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.4e-33  Score=245.89  Aligned_cols=108  Identities=28%  Similarity=0.552  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHhhcCCCCCceee--eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc--cccc
Q psy2846         212 HFRLRKEYNDIKLDPPDGIQAQ--PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF--HPNV  287 (392)
Q Consensus       212 ~kRL~kEl~~L~k~~p~gI~v~--p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If--HPNV  287 (392)
                      .+||++|++++++++++||++.  +.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||  ||||
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~HPNV  103 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHV  103 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTTB
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeCccccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCCCccC
Confidence            4999999999999999999965  78899999999999999999999999999999999999999999999999  9999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHI  334 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL  334 (392)
                      +.+|+||+++|+             ++|+|+++|++||+|  |+++|
T Consensus       104 ~~~G~ICL~iL~-------------~~WsP~~ti~~vL~s--I~slL  135 (136)
T 2a7l_A          104 YSNGHICLSILT-------------EDWSPALSVQSVCLS--IISML  135 (136)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTSCHHHHHHH--HHHHT
T ss_pred             CCCCeEEchhcC-------------CCCCCCCcHHHHHHH--HHHHh
Confidence            999999999997             789999999999998  99987

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=2.1e-33  Score=246.25  Aligned_cols=123  Identities=27%  Similarity=0.441  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHhhcC-CCCCceeeeCC-C--CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLD-PPDGIQAQPLD-N--KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~-~p~gI~v~p~~-~--dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      ..|.+||++|+++++++ +++|+++.+.+ +  |+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||
T Consensus         5 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   84 (138)
T 1jat_B            5 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   84 (138)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEEccccc
Confidence            45789999999999998 78899998853 3  49999999999999999999999999999999999999999999999


Q ss_pred             ccccCC-Cce--eccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846         285 PNVSRH-GDL--SHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS  348 (392)
Q Consensus       285 PNV~~~-G~V--CL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a  348 (392)
                      |||+.+ |+|  |+++|+              +|+|+++|++||++  |+++| .+|+.++|++.++
T Consensus        85 Pnv~~~~G~i~~cL~~l~--------------~W~p~~~i~~vl~~--i~~ll-~~pn~~~p~~~~~  134 (138)
T 1jat_B           85 PCVNPTTGEVQTDFHTLR--------------DWKRAYTMETLLLD--LRKEM-ATPANKKLRQPKE  134 (138)
T ss_dssp             TTBCTTTCBBCTTSHHHH--------------TCCTTCCHHHHHHH--HHHHH-TSHHHHTSCCCCT
T ss_pred             CCEeCCCCEEeeecccCC--------------CCCCcCcHHHHHHH--HHHHH-cCCCCCCCCCcch
Confidence            999986 999  899874              79999999999998  99988 4999999999877

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=99.97  E-value=6.5e-31  Score=241.63  Aligned_cols=121  Identities=26%  Similarity=0.435  Sum_probs=102.6

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP  285 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP  285 (392)
                      ...+.+.+||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+  ||
T Consensus        10 ~~~~~a~~RL~kEl~~l~~~~~~~i~~~p~~~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~~   87 (187)
T 2f4w_A           10 RAPTTATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--NG   87 (187)
T ss_dssp             ----CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--CS
T ss_pred             CCccHHHHHHHHHHHHHHhCCCCCEEEEEcCCccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--Cc
Confidence            5667899999999999999999999999999999999999999999999999999999999999999999999999  99


Q ss_pred             cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCC
Q psy2846         286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVR  341 (392)
Q Consensus       286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~  341 (392)
                      ||+.+|+|||++|+          .+.++|+|+++|.+||++  |+++|. .|+.+
T Consensus        88 ~~~~~G~ICL~iL~----------~~~~~W~P~~ti~~vL~s--i~sll~-~p~p~  130 (187)
T 2f4w_A           88 RFKCNTRLCLSITD----------FHPDTWNPAWSVSTILTG--LLSFMV-EKGPT  130 (187)
T ss_dssp             SBCTTSCBC--------------------CCTTCCHHHHHHH--HHHHHH-SCCCC
T ss_pred             eeccCCeEeeeccc----------cCccCCCCcCcHHHHHHH--HHHHhc-CCCCC
Confidence            99999999999995          224799999999999998  999995 66654

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=99.96  E-value=7.7e-31  Score=241.00  Aligned_cols=121  Identities=17%  Similarity=0.281  Sum_probs=110.6

Q ss_pred             ccccHHHHHHHHHHHHHhhcCC---CCCceeeeCCCCccEEEEEEecC-CCCCCCC-----------cEEEEEEEeCCCC
Q psy2846         205 QEDNTWRHFRLRKEYNDIKLDP---PDGIQAQPLDNKRCHWMATIAGP-VASPYEG-----------GVFYLYIRIPFSY  269 (392)
Q Consensus       205 ~~~~s~a~kRL~kEl~~L~k~~---p~gI~v~p~~~dl~~W~v~I~GP-~~TPYeg-----------G~F~~~I~fP~dY  269 (392)
                      ..+++.+.+||++||++|++++   +.+|++.+.++|+++|+++|.|| ++|||+|           |.|+|+|.||++|
T Consensus        22 ~~~s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~Y  101 (186)
T 1zuo_A           22 VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNF  101 (186)
T ss_dssp             --CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTT
T ss_pred             ccccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcCCccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCCC
Confidence            3567789999999999999998   68899999999999999999998 9999998           8999999999999


Q ss_pred             CCCCCcCccccccccc-cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCC
Q psy2846         270 PMHPPKVKFITRIFHP-NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRV  340 (392)
Q Consensus       270 P~~PP~V~F~T~IfHP-NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~  340 (392)
                      |++||+|+|.|++||| ||+.+|.|||++|+            .++|+|+++|++||++  |+++|. +|+.
T Consensus       102 P~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~------------~~~WsP~~ti~~VL~s--I~slL~-~p~a  158 (186)
T 1zuo_A          102 PFDPPFVRVVLPVLSGGYVLGGGALCMELLT------------KQGWSSAYSIESVIMQ--INATLV-KGKA  158 (186)
T ss_dssp             TSSCCEEEEEESCEESTTBCGGGBBCCGGGS------------TTTCCTTSCHHHHHHH--HHHHHH-HTTC
T ss_pred             CCCCCeEEEeCCccCCCccCCCCcEEeccCC------------CCCCCCcCcHHHHHHH--HHHHHc-CCCh
Confidence            9999999999999999 69999999999996            3689999999999998  999996 4443

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.87  E-value=2.7e-23  Score=186.84  Aligned_cols=105  Identities=16%  Similarity=0.221  Sum_probs=94.3

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCc----------EEEEEEEeCCCCCCCCCc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGG----------VFYLYIRIPFSYPMHPPK  275 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG----------~F~~~I~fP~dYP~~PP~  275 (392)
                      .....-.+||++|++.|++      ++.+..+|+..|.++|.||++|+|+||          .|.++|.||.+||++||+
T Consensus        28 ~~~~~w~~RL~eE~k~L~k------~v~p~k~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPe  101 (172)
T 2z6o_A           28 RDRELWVQRLKEEYQSLIR------YVENNKNADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPE  101 (172)
T ss_dssp             TCTHHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             CccHHHHHHHHHHHHHHHH------HhccCccccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCe
Confidence            3457779999999999998      467777899999999999999999999          999999999999999999


Q ss_pred             Cccccc-cccccccCCCceeccCCC-CcccccCCCCcCCCCCcccccHHHHHh
Q psy2846         276 VKFITR-IFHPNVSRHGDLSHAPAQ-GEIYHSNISSECAETWGRRHRLYSILF  326 (392)
Q Consensus       276 V~F~T~-IfHPNV~~~G~VCL~iL~-~~~~~~~~~~~~~e~WsP~~sI~sILl  326 (392)
                      |+|.++ +||||||.+|+|||++|. +.|          ..|+|+++|.+||.
T Consensus       102 V~F~~~~~~hpnmY~~G~ICLdIL~kp~W----------s~~~P~~~IahiL~  144 (172)
T 2z6o_A          102 IAVPELDGKTAKMYRGGKICLTDHFKPLW----------ARNVPKFGLAHLMA  144 (172)
T ss_dssp             CBCGGGTTTCSSBCTTSBBCCCTTHHHHH----------HHHTTSCCHHHHHH
T ss_pred             eeeCCCCCCCCCCCCCCcEechhhccccc----------cccCCccCHHHHHh
Confidence            999998 999999999999999994 223          46779999999986

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.53  E-value=1.1e-14  Score=131.11  Aligned_cols=113  Identities=11%  Similarity=0.178  Sum_probs=87.9

Q ss_pred             HHHHHHHHHhhcCCC---CCceeeeCCCCccEEEEEEecCCCCCCCCcE---EEEEEEeCCCCCCCCCcCcccc------
Q psy2846         213 FRLRKEYNDIKLDPP---DGIQAQPLDNKRCHWMATIAGPVASPYEGGV---FYLYIRIPFSYPMHPPKVKFIT------  280 (392)
Q Consensus       213 kRL~kEl~~L~k~~p---~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~---F~~~I~fP~dYP~~PP~V~F~T------  280 (392)
                      +|..+|+..+.+.-+   +...+...++....+.+.+.|.-.++|+||.   |.+.|.||.+||++||.|.|.+      
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t~~m~  110 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMN  110 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGGCCTT
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcCCCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCCcccc
Confidence            456677776654322   2233344556666777777777779999998   8899999999999999998855      


Q ss_pred             -c---cc-cccccCCCceeccCCCCcccccCCCCcCCCCCcc-cccHHHHHhHHHHHHHHhcCCCCCC
Q psy2846         281 -R---IF-HPNVSRHGDLSHAPAQGEIYHSNISSECAETWGR-RHRLYSILFSNSIRDHIQRRPRVRF  342 (392)
Q Consensus       281 -~---If-HPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP-~~sI~sILlS~~IqslL~~~P~~~~  342 (392)
                       +   |+ ||||+.+|+||+++|.              +|+| +.+|.++|.+  |+++| .+|+.+.
T Consensus       111 ~~~~~I~~hpnVD~~G~I~lpyL~--------------~W~p~~s~L~~ll~~--l~~lf-~ep~~d~  161 (162)
T 3r3q_A          111 TISSSLPIQEYIDSNGWIALPILH--------------AWDPAAMNLIMVVQE--LMSLL-HEPPQDQ  161 (162)
T ss_dssp             TSCTTSTHHHHBCTTSBBCCGGGG--------------SCCGGGCCHHHHHHH--HHHTT-SCCCCCC
T ss_pred             ccccccCCCCCCCCCCcEeCcccc--------------cCCCCcCcHHHHHHH--HHHHh-cCCCCCC
Confidence             1   77 9999999999999996              6999 5789999997  88877 5887653

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.50  E-value=7e-15  Score=129.89  Aligned_cols=87  Identities=21%  Similarity=0.385  Sum_probs=73.8

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCc----------EEEEEEEeCCCCCCCCCc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGG----------VFYLYIRIPFSYPMHPPK  275 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG----------~F~~~I~fP~dYP~~PP~  275 (392)
                      .....-..||..||+.|-+      ++....++-..|...+.||+||+|.|+          .|.+++.||.+||.+||+
T Consensus        30 rd~~~w~~RlkeEy~alI~------yv~~nK~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPe  103 (168)
T 3kpa_A           30 RDGDKWTARLKEEYASLIT------YVEHNKASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPE  103 (168)
T ss_dssp             TSTHHHHHHHHHHHHHHHH------HHHHHHHTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCC
T ss_pred             CCHHHHHHHHHHHHHHHHH------HHHhcccccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCE
Confidence            3446688999999999874      333333333469999999999999999          999999999999999999


Q ss_pred             Cccccc-cccccccCCCceeccCC
Q psy2846         276 VKFITR-IFHPNVSRHGDLSHAPA  298 (392)
Q Consensus       276 V~F~T~-IfHPNV~~~G~VCL~iL  298 (392)
                      |+|.+. ++|||+|.+|+|||+++
T Consensus       104 I~Fp~ldgkt~kmYr~GkICLdIh  127 (168)
T 3kpa_A          104 IALPELEGKTVKMYRGGKICMTTH  127 (168)
T ss_dssp             CBCGGGTTTCSSEETTTEECCCTT
T ss_pred             eecccccCcCccccCCCcEEeccc
Confidence            999995 89999999999999963

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=99.32  E-value=6e-13  Score=97.14  Aligned_cols=47  Identities=38%  Similarity=0.706  Sum_probs=40.3

Q ss_pred             CCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHH
Q psy2846         110 GSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYF  159 (392)
Q Consensus       110 ~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~  159 (392)
                      +..+..||.||+.+||+||+..||++|++|||+|+.++.++   .+|+.+
T Consensus         6 ~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~---~lW~~l   52 (53)
T 1fs1_A            6 GVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE---SLWQTL   52 (53)
T ss_dssp             ---CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG---GGC---
T ss_pred             CCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh---HHHHhc
Confidence            34788999999999999999999999999999999999998   999975

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=99.15  E-value=2.8e-11  Score=118.30  Aligned_cols=68  Identities=19%  Similarity=0.396  Sum_probs=58.7

Q ss_pred             CccCCCCHHHHHHHhccCCHHHHH-HHHHHhHHHHHHHhCCCChhHHHHHHHhhCCCCcc---CccccchHHHHHh
Q psy2846         111 SSIHSLPPEVLITVFSYLDDLSLC-SVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNS---NITVSNWYSVYAK  182 (392)
Q Consensus       111 ~~~~~LP~eil~~IFsyLd~~sL~-~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~~~~---~~~~~~Wkk~Y~k  182 (392)
                      ..+..||+|||+.||+||++.+|+ +|++|||+|+.|+++.   .+|+.+|.++ .+++.   .....+||++|..
T Consensus        49 ~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~---~~w~~~~~~~-g~~~~~~~~~~~~~Wk~~y~~  120 (297)
T 2e31_A           49 EYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGA---PLWLLKCQQE-GLVPEGSADEERDHWQQFYFL  120 (297)
T ss_dssp             CCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSH---HHHHHHHHHT-TCCCC-----CCSCHHHHHHH
T ss_pred             cChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcCh---HHHHHHhhcc-CcccccccCCCCCChhhhheh
Confidence            478889999999999999999999 9999999999999999   9999999997 33322   2256789999976

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.15  E-value=1.8e-11  Score=119.76  Aligned_cols=53  Identities=23%  Similarity=0.443  Sum_probs=49.0

Q ss_pred             CCCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhC-CCChhHHHHHHHhhC
Q psy2846         109 GGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD-LISSDQWRYFVLTRF  164 (392)
Q Consensus       109 ~~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~-~~~~~lW~~~~~~~~  164 (392)
                      ..|++..||.||+++||+|||+.+|++|++|||+|++++.+ +   .+||.+|.+..
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~---~~w~~~~~~~~   64 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST---SLWKKLLISEN   64 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCH---HHHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCH---HHHHHHHhccc
Confidence            34599999999999999999999999999999999999998 7   99999998764

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.13  E-value=4.5e-11  Score=105.79  Aligned_cols=81  Identities=19%  Similarity=0.402  Sum_probs=70.5

Q ss_pred             CCccEEEEEEecCCCCCCCCcEEEE--EEEeCCCCCCCCCcCccccc------cccccccCCCceeccCCCCcccccCCC
Q psy2846         237 NKRCHWMATIAGPVASPYEGGVFYL--YIRIPFSYPMHPPKVKFITR------IFHPNVSRHGDLSHAPAQGEIYHSNIS  308 (392)
Q Consensus       237 ~dl~~W~v~I~GP~~TPYegG~F~~--~I~fP~dYP~~PP~V~F~T~------IfHPNV~~~G~VCL~iL~~~~~~~~~~  308 (392)
                      .++..|.++|.    .+|+|+.|.+  .|-||.+||++||.| |.++      .+||||+.+|+||++.|+         
T Consensus        51 ~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~~~~~Vd~~G~i~lpyL~---------  116 (146)
T 3obq_A           51 RELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIKTGKHVDANGKIYLPYLH---------  116 (146)
T ss_dssp             CEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEECCBTTBCTTCBBCCHHHH---------
T ss_pred             heEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEECCCCCCCCCCCEeccccc---------
Confidence            57999999997    6899999995  888999999999999 7666      589999999999999996         


Q ss_pred             CcCCCCCcc-cccHHHHHhHHHHHHHHhcCC
Q psy2846         309 SECAETWGR-RHRLYSILFSNSIRDHIQRRP  338 (392)
Q Consensus       309 ~~~~e~WsP-~~sI~sILlS~~IqslL~~~P  338 (392)
                           +|++ ..+|.+++.+  +++.+..+|
T Consensus       117 -----~W~~~~snL~~ll~~--l~~~F~~ep  140 (146)
T 3obq_A          117 -----EWKHPQSDLLGLIQV--MIVVFGDEP  140 (146)
T ss_dssp             -----TCCTTTCCHHHHHHH--HHHHHHHSC
T ss_pred             -----ccCCCCCCHHHHHHH--HHHHHhhCC
Confidence                 5887 7789999997  888887444

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.11  E-value=4e-11  Score=117.30  Aligned_cols=52  Identities=31%  Similarity=0.693  Sum_probs=48.9

Q ss_pred             CccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCC
Q psy2846         111 SSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFP  165 (392)
Q Consensus       111 ~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~  165 (392)
                      .+++.||.||+++|||||+++|||++++|||+|+.+++|+   .|||.++.+.++
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~---~LWr~~l~rd~~   54 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP---ILWRYFLLRDLP   54 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH---HHHHHHHHSSGG
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc---hHHHHHHhccCC
Confidence            4788999999999999999999999999999999999999   999999998643

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.11  E-value=8.7e-11  Score=115.05  Aligned_cols=71  Identities=24%  Similarity=0.355  Sum_probs=57.8

Q ss_pred             CCCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCCC----------ccCccccchHH
Q psy2846         109 GGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLF----------NSNITVSNWYS  178 (392)
Q Consensus       109 ~~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~~----------~~~~~~~~Wkk  178 (392)
                      ..|++..||.|++.+||+|||+.||++|++|||+|+.++.++   .+|+++|+++.-.-          .+......||.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~---~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~   91 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN---LLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKS   91 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS---HHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHH
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCch---hHhhhheeecccccccccccceecCCCccCCcHHH
Confidence            456999999999999999999999999999999999999999   99999998754221          11123356777


Q ss_pred             HHHh
Q psy2846         179 VYAK  182 (392)
Q Consensus       179 ~Y~k  182 (392)
                      .|.+
T Consensus        92 ~~~~   95 (445)
T 2ovr_B           92 AYIR   95 (445)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            7764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.04  E-value=6e-11  Score=116.32  Aligned_cols=53  Identities=26%  Similarity=0.609  Sum_probs=50.2

Q ss_pred             CCccCCCCHH----HHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCC
Q psy2846         110 GSSIHSLPPE----VLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFP  165 (392)
Q Consensus       110 ~~~~~~LP~e----il~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~  165 (392)
                      .|++..||.|    |+++||+|||+.||++|++|||+|+.++.++   .+||.+|.+++.
T Consensus         8 ~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~---~~w~~~~~~~~~   64 (435)
T 1p22_A            8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG---MLWKKLIERMVR   64 (435)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT---THHHHHHHHHHT
T ss_pred             cChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCh---HHHHHHHHhhcC
Confidence            4599999999    9999999999999999999999999999999   999999999864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.23  E-value=3e-07  Score=87.15  Aligned_cols=46  Identities=37%  Similarity=0.673  Sum_probs=42.0

Q ss_pred             CccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHH
Q psy2846         111 SSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYF  159 (392)
Q Consensus       111 ~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~  159 (392)
                      ..++.||+||+.+||+||+..++++|++|||+|+.++.+.   .+|+.+
T Consensus         7 ~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~---~~~~~l   52 (336)
T 2ast_B            7 VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE---SLWQTL   52 (336)
T ss_dssp             CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCS---TTSSEE
T ss_pred             CChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCc---hhheee
Confidence            4678999999999999999999999999999999999887   777744

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.79  E-value=8.7e-06  Score=82.78  Aligned_cols=36  Identities=42%  Similarity=0.698  Sum_probs=29.7

Q ss_pred             CccCCCCHHHHHHHhccCC-HHHHHHHHHHhHHHHHH
Q psy2846         111 SSIHSLPPEVLITVFSYLD-DLSLCSVSRACTRWFTI  146 (392)
Q Consensus       111 ~~~~~LP~eil~~IFsyLd-~~sL~~~~~VCk~W~~i  146 (392)
                      |.++.||+|||.+||+||+ .+++.++++|||+|+.+
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4788999999999999999 99999999999999999

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=97.29  E-value=7.7e-05  Score=75.89  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=32.4

Q ss_pred             cCCCCHHHHHHHhccC-CHHHHHHHHHHhHHHHHHH
Q psy2846         113 IHSLPPEVLITVFSYL-DDLSLCSVSRACTRWFTII  147 (392)
Q Consensus       113 ~~~LP~eil~~IFsyL-d~~sL~~~~~VCk~W~~i~  147 (392)
                      ...||+||+.+||+|| +.+++.++++|||+|+.+.
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~   48 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKID   48 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhh
Confidence            3469999999999999 8999999999999999983

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=96.81  E-value=0.00058  Score=56.31  Aligned_cols=65  Identities=17%  Similarity=0.312  Sum_probs=41.2

Q ss_pred             CCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCCCccCccccchHHHHHhhhcc
Q psy2846         116 LPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPLFNSNITVSNWYSVYAKLVES  186 (392)
Q Consensus       116 LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~~~~~~~~~~Wkk~Y~kLves  186 (392)
                      .|-++|.-|+...++..|.++-.-|-   .++.+.  ++||+.+|.+.|+...+ ....+||++|.+|.+.
T Consensus        13 ~Py~lL~PVLek~tp~QL~~IE~~nP---~L~~dT--deLWk~~c~rdF~~~~p-~e~esWRelY~rl~~e   77 (97)
T 4hfx_A           13 VPYSVLEPVLERCTPDQLYRIEEYNH---VLIEET--DQLWKVHCHRDFKEERP-EEYESWREMYLRLQDA   77 (97)
T ss_dssp             -------CCGGGCCHHHHHHHHTC---------CC--HHHHHHHC----CCSCC-CSSSCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHccCCHHHHHHHHHhCc---ccchhh--HHHHHHHHHhHCcccCC-CCCCCHHHHHHHHHHH
Confidence            57789999999999999999999887   444333  59999999999997654 6678999999998753

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=92.53  E-value=0.55  Score=39.67  Aligned_cols=70  Identities=13%  Similarity=0.048  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCC------CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLD------NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFIT  280 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~------~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T  280 (392)
                      .-..+-..|+..|+.--+..+......      +....+.+.|.+..+ .-..-.+.+.|.+|.+||..||.|.+.+
T Consensus        10 ~~~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           10 QYYEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             chHHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            334566789998886544444332111      124567788874222 1123478899999999999999988654

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.78  E-value=0.28  Score=40.94  Aligned_cols=68  Identities=16%  Similarity=0.159  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFIT  280 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T  280 (392)
                      ...+...|+..|+.--+..+.+  .++....+.+.|..-.+..-+.-.+.+.|.||.+||..||.+.+.+
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~--~~~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTV--LSENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEE--CCSSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEE--ccCCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            3456778999998654444444  2333456677665322222233468899999999999999987643

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=90.19  E-value=0.82  Score=38.01  Aligned_cols=67  Identities=18%  Similarity=0.197  Sum_probs=43.3

Q ss_pred             HHHHHHHHhhcCCCCCceeeeCC--CCccEEEEEEecCCCCCCC--CcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846         214 RLRKEYNDIKLDPPDGIQAQPLD--NKRCHWMATIAGPVASPYE--GGVFYLYIRIPFSYPMHPPKVKFIT  280 (392)
Q Consensus       214 RL~kEl~~L~k~~p~gI~v~p~~--~dl~~W~v~I~GP~~TPYe--gG~F~~~I~fP~dYP~~PP~V~F~T  280 (392)
                      ....|+..|+.--+..+.+....  .....+.+.|..+.+..-+  .-.+.+.|.+|.+||..+|.|...+
T Consensus        12 ~~~~EleaL~SIY~de~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           12 VLPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             HHHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHCCCceEEecCCCCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            57789998886555555443221  2345666666532221111  2478899999999999999988765

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.28  E-value=1.6  Score=36.30  Aligned_cols=65  Identities=9%  Similarity=0.052  Sum_probs=40.6

Q ss_pred             HHHHHHHHhhcCCCC--CceeeeC-CCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccc
Q psy2846         214 RLRKEYNDIKLDPPD--GIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFI  279 (392)
Q Consensus       214 RL~kEl~~L~k~~p~--gI~v~p~-~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~  279 (392)
                      ....|+..|+.--+.  .+.+... ..+...+.+.|.. .+..=..-.+.+.|.+|.+||..||.+.+.
T Consensus        11 ~q~~EleaL~SIy~d~~e~~~~~~~~~~~~~f~i~l~~-~~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           11 PVQEELSVLAAIFCRPHEWEVLSRSETDGTVFRIHTKA-EGFMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             HHHHHHHHHHHHHCCTTTCCCSEECSSSCEEEEEEEEC-CTTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEecCCCCCCCeEEEEecC-CCCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            456788888754322  3433211 1234577788763 221101237899999999999999998765

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=83.46  E-value=5.5  Score=36.13  Aligned_cols=82  Identities=17%  Similarity=0.223  Sum_probs=58.5

Q ss_pred             HHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCCce
Q psy2846         214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDL  293 (392)
Q Consensus       214 RL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G~V  293 (392)
                      +|.+|+.++-=+     .+...+.++...++.+..-     .|....++|.++.+||.+||.+...-|+  |.       
T Consensus         5 ~li~Ei~~iGW~-----~l~~id~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~-------   65 (186)
T 3zqs_A            5 SLIEEIGTLGWD-----KLVYADTCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF-------   65 (186)
T ss_dssp             SHHHHHHHHCGG-----GEEEECTTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC-------
T ss_pred             HHHHHHHHhCCc-----eeeeecCCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc-------
Confidence            688888888432     2333467888999999843     3788999999999999999986543332  10       


Q ss_pred             eccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHH
Q psy2846         294 SHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHI  334 (392)
Q Consensus       294 CL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL  334 (392)
                                        .-.|++..++..|+.-  ++..|
T Consensus        66 ------------------~~~w~~~ssL~~v~~q--F~~~L   86 (186)
T 3zqs_A           66 ------------------CASWTPQSSLISIYSQ--FLAAI   86 (186)
T ss_dssp             ------------------CCCCCTTCCHHHHHHH--HHHHH
T ss_pred             ------------------ccccCCCccHHHHHHH--HHHHH
Confidence                              1368888898888773  55544

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=82.20  E-value=3.8  Score=34.21  Aligned_cols=67  Identities=15%  Similarity=0.101  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHhhcCCCCCceeeeCCC-----CccEEEEEEecCCC-C-CCCCcEEEEEEEeCCCCCCCCCcCccc
Q psy2846         212 HFRLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVA-S-PYEGGVFYLYIRIPFSYPMHPPKVKFI  279 (392)
Q Consensus       212 ~kRL~kEl~~L~k~~p~gI~v~p~~~-----dl~~W~v~I~GP~~-T-PYegG~F~~~I~fP~dYP~~PP~V~F~  279 (392)
                      ..+...|+..|+.--+..+.......     ....+.+.|. |.+ . .-..-.+.+.|.||.+||..||.|.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence            45667899888865444444322111     1345666775 222 1 001246889999999999999999774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	392
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	6e-23
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	7e-21
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	1e-20
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	3e-20
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-19
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	6e-18
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	1e-17
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	1e-17
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	4e-17
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	6e-17
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	9e-17
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	1e-16
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	3e-16
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	5e-16
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	7e-16
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	1e-15
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	3e-15
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	4e-15
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	5e-15
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	6e-15
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	7e-15
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	2e-14
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	3e-14
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	5e-14
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-13
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	1e-13
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	1e-12
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	2e-11
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	2e-11
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	3e-07
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	3e-07
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	2e-06
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	1e-05
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	6e-05

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score = 90.9 bits (225), Expect = 6e-23
 Identities = 39/116 (33%), Positives = 60/116 (51%), Gaps = 1/116 (0%)

Query: 213 FRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
             LR++  ++  +P +G  A  +D N    W   I GP  + YEGGVF  ++  P  YP+
Sbjct: 2   LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPL 61

Query: 272 HPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
            PPK+KFIT I+HPNV ++GD+  +             +  E W   H + +I+ S
Sbjct: 62  RPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS 117

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score = 86.0 bits (212), Expect = 7e-21
 Identities = 40/80 (50%), Positives = 52/80 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE  D+  DPP    A P+ +   HW ATI GP  SPY+GGVF+L I  P  YP  P
Sbjct: 5   RIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDL 293
           PKV F TRI+HPN++ +G +
Sbjct: 65  PKVAFTTRIYHPNINSNGSI 84

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score = 85.6 bits (211), Expect = 1e-20
 Identities = 37/116 (31%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 213 FRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
             L+K+  D++  P DG  A  +D N    W   + GP  + YEGG F   +  P  YP 
Sbjct: 3   LLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQ 62

Query: 272 HPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
            PPK+KFI+ I+HPN+ + G++  +                E W   H + +IL S
Sbjct: 63  KPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLS 118

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score = 83.9 bits (207), Expect = 3e-20
 Identities = 31/121 (25%), Positives = 47/121 (38%), Gaps = 14/121 (11%)

Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPL----DNKRCHWMATIAGPVASPYEGGVFYLYIRIP 266
           R+FRL +E  + +    DG  +  L    D     W   I GP  + YE  ++ L I   
Sbjct: 6   RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 65

Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
             YP  PP V+F+T+I    V+           G +    IS      W   + +  +L 
Sbjct: 66  PKYPEAPPFVRFVTKINMNGVNSSN--------GVVDPRAIS--VLAKWQNSYSIKVVLQ 115

Query: 327 S 327
            
Sbjct: 116 E 116

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score = 81.7 bits (201), Expect = 3e-19
 Identities = 39/112 (34%), Positives = 54/112 (48%), Gaps = 9/112 (8%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  +K D P G+ A PL +    W A I GP  +PYE G F L +     YP  P
Sbjct: 7   RLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKP 66

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSIL 325
           P VKF++ +FHPNV  +         GEI    + +    T+     L SI 
Sbjct: 67  PHVKFLSEMFHPNVYAN---------GEICLDILQNRWTPTYDVASILTSIQ 109

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score = 77.9 bits (191), Expect = 6e-18
 Identities = 42/113 (37%), Positives = 53/113 (46%), Gaps = 9/113 (7%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++KE  +I LDPP    A P  +    W +TI GP  S YEGGVF+L I     YP  P
Sbjct: 6   RIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKP 65

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
           PKV F TRI+H N++          QG I    +    +        L SI  
Sbjct: 66  PKVTFRTRIYHCNINS---------QGVICLDILKDNWSPALTISKVLLSICS 109

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 1e-17
 Identities = 33/110 (30%), Positives = 52/110 (47%)

Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           R  RL++E + +  +PP GI      ++     A I G   +PYE GVF L + IP  YP
Sbjct: 3   RASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYP 62

Query: 271 MHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHR 320
             PP+++F+T I+HPN+   G +     +     +   S    T     +
Sbjct: 63  FEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQ 112

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score = 77.1 bits (189), Expect = 1e-17
 Identities = 36/78 (46%), Positives = 50/78 (64%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  DP  GI A+P D+   ++  TI GP  SPYE G+F L + +P  YPM  
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEA 66

Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPN+ R G
Sbjct: 67  PKVRFLTKIYHPNIDRLG 84

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score = 76.0 bits (186), Expect = 4e-17
 Identities = 29/78 (37%), Positives = 41/78 (52%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL++E   + +    GI A P  +    W+AT+ GP  + YE   + L +  P  YP  P
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKP 72

Query: 274 PKVKFITRIFHPNVSRHG 291
           P VKF T  +HPNV + G
Sbjct: 73  PVVKFTTPCWHPNVDQSG 90

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 74.0 bits (181), Expect = 6e-17
 Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 1/82 (1%)

Query: 213 FRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           +R++KE ++   +PP         N    W+    G   + Y   V+ L I  P  YP+ 
Sbjct: 1   YRIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLK 60

Query: 273 PPKVKFITRI-FHPNVSRHGDL 293
           PP V F+ +   H +V  +GD+
Sbjct: 61  PPIVYFLQKPPKHTHVYSNGDI 82

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 9e-17
 Identities = 32/112 (28%), Positives = 48/112 (42%), Gaps = 9/112 (8%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL++E   + +    GI A P  +    W+ TI G   + YE   + L +  P  YP + 
Sbjct: 5   RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNA 64

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSIL 325
           P VKF+T  +HPNV            G I    +  + +  +  R  L SI 
Sbjct: 65  PTVKFLTPCYHPNVDTQ---------GNISLDILKEKWSALYDVRTILLSIQ 107

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score = 74.4 bits (182), Expect = 1e-16
 Identities = 34/78 (43%), Positives = 51/78 (65%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE   +  +P  GI+A+P ++   ++   IAGP  SP+EGG F L + +P  YPM  
Sbjct: 6   RIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAA 65

Query: 274 PKVKFITRIFHPNVSRHG 291
           PKV+F+T+I+HPNV + G
Sbjct: 66  PKVRFMTKIYHPNVDKLG 83

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score = 73.2 bits (179), Expect = 3e-16
 Identities = 28/97 (28%), Positives = 42/97 (43%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R+ KE  D++  PP  ++    D+        +  P   PY    F L I  P  YP  P
Sbjct: 4   RVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLLPDQPPYHLKAFNLRISFPPEYPFKP 63

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSE 310
           P +KF T+I+HPNV  +G +       E +     + 
Sbjct: 64  PMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTC 100

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (175), Expect = 5e-16
 Identities = 30/118 (25%), Positives = 45/118 (38%), Gaps = 17/118 (14%)

Query: 214 RLRKEYNDIKLDPPDGIQAQP--LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPM 271
           RL+KE   ++ DPP G+      + N    W+  + G   + YEG  F L  +    YP 
Sbjct: 7   RLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPF 66

Query: 272 HPPKVKFITRIF--HPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
             P+V F       HP+V  +G +               S   E W     + S+  S
Sbjct: 67  DSPQVMFTGENIPVHPHVYSNGHICL-------------SILTEDWSPALSVQSVCLS 111

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 72.1 bits (176), Expect = 7e-16
 Identities = 27/88 (30%), Positives = 41/88 (46%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL+++Y  IK DP   I A+PL +    W   + GP  +PYEGG ++  +  P  +P  P
Sbjct: 5   RLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKP 64

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGE 301
           P +  IT       +    LS      +
Sbjct: 65  PSIYMITPNGRFKCNTRLCLSITDFHPD 92

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 1e-15
 Identities = 39/112 (34%), Positives = 55/112 (49%), Gaps = 9/112 (8%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
            + KE   +  DPPDGI+  P +        TI GP  +PY GG+F + + +   +P  P
Sbjct: 10  LVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASP 69

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSIL 325
           PK  F+T+IFHPNV          A GEI  + +  +     G RH L +I 
Sbjct: 70  PKGYFLTKIFHPNV---------GANGEICVNVLKRDWTAELGIRHVLLTIK 112

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score = 71.0 bits (173), Expect = 3e-15
 Identities = 38/115 (33%), Positives = 51/115 (44%), Gaps = 1/115 (0%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL KE   +  D P GI A P  +N    W   I GP  +PY  GVF   +  P  YP+ 
Sbjct: 7   RLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLS 66

Query: 273 PPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK+ F   I HPN+  +G++  +         N+     E W     +  IL S
Sbjct: 67  PPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS 121

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score = 70.1 bits (171), Expect = 4e-15
 Identities = 36/114 (31%), Positives = 47/114 (41%), Gaps = 10/114 (8%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
            L +++ D+K +   GI A+P+      W   I G   S ++G VF L I     Y   P
Sbjct: 8   LLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAP 67

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           P VKFIT  FHPNV  H                      E W   + L SIL +
Sbjct: 68  PVVKFITIPFHPNVDPHTGQPCIDFLD----------NPEKWNTNYTLSSILLA 111

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score = 69.3 bits (169), Expect = 5e-15
 Identities = 32/121 (26%), Positives = 47/121 (38%), Gaps = 15/121 (12%)

Query: 211 RHFRLRKEYNDIKLDPPDGIQ----AQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIP 266
           R+FRL +E    +            A   D     W  TI GP  S +E  ++ L I   
Sbjct: 5   RNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCG 64

Query: 267 FSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
            +YP  PPKV FI++I  P V+           GE+            W R + + ++L 
Sbjct: 65  PNYPDSPPKVTFISKINLPCVNPTT--------GEVQ---TDFHTLRDWKRAYTMETLLL 113

Query: 327 S 327
            
Sbjct: 114 D 114

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score = 69.4 bits (169), Expect = 6e-15
 Identities = 36/118 (30%), Positives = 50/118 (42%), Gaps = 13/118 (11%)

Query: 211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSY 269
           R  R+ KE   +K DP   I  + +      H   T  GP  +PYEGG F + I +P  Y
Sbjct: 2   RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 270 PMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           P  PPK++F T+++HPN+S                +         W     L S L S
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVT------------GAICLDILKNAWSPVITLKSALIS 107

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score = 69.0 bits (168), Expect = 7e-15
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 9/113 (7%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           RL +++  ++ DPP G+   P ++    W A I GP  +P+E G F L +     YP  P
Sbjct: 7   RLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKP 66

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
           P VKFI+++FHPNV          A G I    + +  + T+     L SI  
Sbjct: 67  PTVKFISKMFHPNVY---------ADGSICLDILQNRWSPTYDVAAILTSIQS 110

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score = 68.7 bits (167), Expect = 2e-14
 Identities = 32/87 (36%), Positives = 41/87 (47%), Gaps = 5/87 (5%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKR-----CHWMATIAGPVASPYEGGVFYLYIRIPFS 268
           RL +E    + D P G  A P  N        +W   I G   +P+EGG+F L +     
Sbjct: 6   RLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDD 65

Query: 269 YPMHPPKVKFITRIFHPNVSRHGDLSH 295
           YP  PPK KF   +FHPNV   G +S 
Sbjct: 66  YPSSPPKCKFEPPLFHPNVYPSGTVSL 92

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score = 67.9 bits (165), Expect = 3e-14
 Identities = 40/127 (31%), Positives = 54/127 (42%), Gaps = 25/127 (19%)

Query: 214 RLRKEYNDIK-------------LDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFY 260
           RL KE  DI+                  G+ AQ +      W   IAGP+ +PYEGG F 
Sbjct: 5   RLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFT 64

Query: 261 LYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHR 320
           L I IP  YP +PPK+KF+T+I+HPN+S                +         W     
Sbjct: 65  LDIVIPPDYPYNPPKMKFVTKIWHPNISSQT------------GAICLDILKHEWSPALT 112

Query: 321 LYSILFS 327
           + + L S
Sbjct: 113 IRTALLS 119

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score = 66.7 bits (162), Expect = 5e-14
 Identities = 31/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRC-HWMATIAGPVASPYEGGVFYLYIRIPFSYPMH 272
           RL KE  +I+       +   +D      W   I  P   PY+ G F + I  P  YP  
Sbjct: 3   RLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFK 61

Query: 273 PPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           PPK+ F T+I+HPN+   G               +    AE W    +   ++ S
Sbjct: 62  PPKITFKTKIYHPNIDEKG------------QVCLPVISAENWKPATKTDQVIQS 104

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score = 66.2 bits (161), Expect = 1e-13
 Identities = 24/113 (21%), Positives = 45/113 (39%), Gaps = 11/113 (9%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R++K+ N++ L     I     D+   ++   I  P    Y+ G F    ++   YP  P
Sbjct: 7   RIQKDINELNLPKTCDISFSDPDDLL-NFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDP 64

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILF 326
           PKVK  T ++HPN+            G +  + +  +          +Y + +
Sbjct: 65  PKVKCETMVYHPNIDLE---------GNVCLNILREDWKPVLTINSIIYGLQY 108

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 62.9 bits (152), Expect = 1e-12
 Identities = 37/114 (32%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 214 RLRKEYNDIKLDPPD---GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYP 270
           R+++E+ ++          I+   +D         IAGP  +PYEGG + L I+IP +YP
Sbjct: 8   RIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYP 67

Query: 271 MHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSI 324
            +PPKV+FIT+I+HPN+S           G I    +  + A     R  L S+
Sbjct: 68  FNPPKVRFITKIWHPNISSVT--------GAICLDILKDQWAAAMTLRTVLLSL 113

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 59.7 bits (144), Expect = 2e-11
 Identities = 25/114 (21%), Positives = 39/114 (34%), Gaps = 12/114 (10%)

Query: 214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHP 273
           R   +Y  +           P D     +     GP  +PYE G + L++++P  YP   
Sbjct: 4   RREMDYMRLCNSTRK---VYPSDTVA-EFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKS 59

Query: 274 PKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFS 327
           P + F  RI HPNV            G +    I+      +   +     L  
Sbjct: 60  PSIGFCNRILHPNVD--------ERSGSVCLDVINQTWTPMYQLENIFDVFLPQ 105

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 13/92 (14%), Positives = 31/92 (33%), Gaps = 10/92 (10%)

Query: 214 RLRKEYNDIKLDPPD---GIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRI--PFS 268
              +E  ++     D    + +   ++     +  + G +  PY G  + + I +    +
Sbjct: 18  LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDT 77

Query: 269 YPMHPPKVKFIT-----RIFHPNVSRHGDLSH 295
           YP +PP                +V  +G +  
Sbjct: 78  YPYNPPICFVKPTSSMTIKTGKHVDANGKIYL 109

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 115 SLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
           SLP E+L+ +FS L    L  VS  C RW+ + +D
Sbjct: 3   SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD 37

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 3e-07
 Identities = 15/129 (11%), Positives = 35/129 (27%), Gaps = 26/129 (20%)

Query: 214 RLRKEYNDIKLDPPDG---IQAQPLDNKRCHWMATIAGP------------VASPYEGGV 258
           RL KE  DI             + +++    W   +               +        
Sbjct: 8   RLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEY 67

Query: 259 FYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRR 318
             L      ++P  PP V+ +  +            +    G +    ++ +    W   
Sbjct: 68  ILLNFSFKDNFPFDPPFVRVVLPVLSGG--------YVLGGGALCMELLTKQG---WSSA 116

Query: 319 HRLYSILFS 327
           + + S++  
Sbjct: 117 YSIESVIMQ 125

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 9/74 (12%), Positives = 26/74 (35%), Gaps = 14/74 (18%)

Query: 236 DNKRCHWMATIAGPVASPYEGGVFY---LYIRIPFSYPMHPPKVKFITR----------- 281
            +     + +I G +++  +G   +   + + +P  YP+ PP +                
Sbjct: 48  SDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISSSL 107

Query: 282 IFHPNVSRHGDLSH 295
                +  +G ++ 
Sbjct: 108 PIQEYIDSNGWIAL 121

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIAD 149
           I  LP E+ + V S+L+   L   ++ C  W  +  D
Sbjct: 19  ISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED 55

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 113 IHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTR 163
           I SLP E+ + +F+YL    + +       W  II    S+  W+  +++ 
Sbjct: 6   ITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK--STSLWKKLLISE 54

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 6e-05
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 3/49 (6%)

Query: 116 LPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRF 164
               +   + SYLD  SLC+    C  W+ + +D      W+  +    
Sbjct: 18  GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD---GMLWKKLIERMV 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	392
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	99.98
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	99.97
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	99.97
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	99.96
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	99.96
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.64
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.64
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.48
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.47
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	99.47
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.42
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	94.94
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	92.67

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=9.3e-39  Score=284.91  Aligned_cols=154  Identities=26%  Similarity=0.451  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeC-CCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~-~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      ..|.|||++|+++|++++++||++.+. ++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|+||||||
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~p~~e~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnv   81 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNI   81 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSSSCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSCTTB
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEECCccchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCceeceE
Confidence            678999999999999999999999985 5699999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      +.+|+||+++|+..|....+...+.+.|+|+++|.+||.+  |+++|. +|+.++|+|.+|               |++|
T Consensus        82 ~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~--i~~ll~-~p~~~~p~n~ea---------------a~l~  143 (164)
T d2ucza_          82 YPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLS--VMSMLS-EPNIESGANIDA---------------CILW  143 (164)
T ss_dssp             CTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHH--HHHHHH-SCCGGGCCCHHH---------------HHHH
T ss_pred             cCCCCeeeccccCccccccccccccccCCccccHHHHHHH--HHHHHh-CCCCCCcccHHH---------------HHHH
Confidence            9999999999999988888888888999999999999997  998885 899999999776               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|...+|.
T Consensus       144 ~~~~~~f~~~~r~  156 (164)
T d2ucza_         144 RDNRPEFERQVKL  156 (164)
T ss_dssp             HTTHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999998874

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=1.5e-37  Score=272.70  Aligned_cols=141  Identities=32%  Similarity=0.516  Sum_probs=134.3

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      +++.|||++|+++|+++++.||++.+.++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+
T Consensus         1 s~~~kRi~~E~~~l~~~~~~gi~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnv~   80 (148)
T d1y6la_           1 STSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNIN   80 (148)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             ChHHHHHHHHHHHHhhCCCCCEEEEECCcccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCceEC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      .+|.||+++|.             +.|+|+++|.+||++  |+.+|. +|+.++|+|.++               |++|+
T Consensus        81 ~~G~iCl~~l~-------------~~W~p~~~l~~il~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~  129 (148)
T d1y6la_          81 SQGVICLDILK-------------DNWSPALTISKVLLS--ICSLLT-DCNPADPLVGSI---------------ATQYM  129 (148)
T ss_dssp             TTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---------------HHHHH
T ss_pred             CCCeEEEEecC-------------CcCCCcEeHHHHHHH--HHHHHh-CCCCcccccHHH---------------HHHHH
Confidence            99999999986             789999999999998  999885 899999999766               99999


Q ss_pred             hCHHHHHHHhcC
Q psy2846         369 SDQWRYFVLTRF  380 (392)
Q Consensus       369 ~d~~~y~~~~r~  380 (392)
                      +|+++|...+|.
T Consensus       130 ~d~~~f~~~ar~  141 (148)
T d1y6la_         130 TNRAEHDRMARQ  141 (148)
T ss_dssp             HCHHHHHHHHHH
T ss_pred             HCHHHHHHHHHH
Confidence            999999998873

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=1.2e-37  Score=273.85  Aligned_cols=140  Identities=31%  Similarity=0.608  Sum_probs=133.5

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      +.|.|||++|+++|++++++||++.+.++|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++|||||+
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGAPTEDNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFHPNVY   81 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECCCchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccceeEc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      .+|.||+++|.             +.|+|+++|.+||.+  |+++| ..|+.++|+|.+|               |++|+
T Consensus        82 ~~G~iCl~~l~-------------~~w~p~~~i~~il~~--i~~ll-~~p~~~~p~n~ea---------------a~~~~  130 (149)
T d1z3da1          82 ADGSICLDILQ-------------NRWSPTYDVAAILTS--IQSLL-DEPNPNSPANSLA---------------AQLYQ  130 (149)
T ss_dssp             TTCBBCCGGGT-------------TSCCTTCCHHHHHHH--HHHTT-SSCCCSSCSCHHH---------------HHHHH
T ss_pred             CCCCEEecccc-------------ccCCCCCCHHHHHHH--HHHHh-CCCCCCChhhHHH---------------HHHHH
Confidence            99999999997             679999999999997  99988 4999999999766               99999


Q ss_pred             hCHHHHHHHhc
Q psy2846         369 SDQWRYFVLTR  379 (392)
Q Consensus       369 ~d~~~y~~~~r  379 (392)
                      +|+++|...+|
T Consensus       131 ~~~~~f~~~vr  141 (149)
T d1z3da1         131 ENRREYEKRVQ  141 (149)
T ss_dssp             HCHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999887

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=5.4e-37  Score=270.43  Aligned_cols=144  Identities=27%  Similarity=0.447  Sum_probs=134.9

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      .+.+||++|+++|++++++||++.+.++|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++|||||+.
T Consensus         2 ~~~~Rl~kE~~~l~~~~~~gi~~~p~~~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnV~~   81 (154)
T d1yh2a1           2 QRASRLKRELHMLATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDS   81 (154)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             cHHHHHHHHHHHHHHCcCCCEEEEECCcchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCCcCC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846         290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS  369 (392)
Q Consensus       290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~  369 (392)
                      +|.||+++|+..         ..+.|+|+++|.+||++  |+++|. +|+.++|+|.+|               |++|.+
T Consensus        82 ~g~icl~~l~~~---------~~~~w~p~~~i~~il~~--i~~ll~-~p~~~~p~n~ea---------------a~~~~~  134 (154)
T d1yh2a1          82 AGRICLDVLKLP---------PKGAWRPSLNIATVLTS--IQLLMS-EPNPDDPLMADI---------------SSEFKY  134 (154)
T ss_dssp             TCBBCCGGGSCT---------TTSCCCTTSCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHHHH
T ss_pred             CCCcccccccCC---------ccccCCccccHHHHHHH--HHHHhc-cCCCCCchhHHH---------------HHHHHH
Confidence            999999999722         13689999999999998  999885 999999999766               999999


Q ss_pred             CHHHHHHHhcC
Q psy2846         370 DQWRYFVLTRF  380 (392)
Q Consensus       370 d~~~y~~~~r~  380 (392)
                      |+++|...+|.
T Consensus       135 ~~~~f~~~~r~  145 (154)
T d1yh2a1         135 NKPAFLKNARQ  145 (154)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999998874

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=3.8e-37  Score=269.23  Aligned_cols=140  Identities=38%  Similarity=0.674  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      .|.|||++|+++|+++++.||++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||++
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~   80 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINS   80 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEECCCchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCceeeECC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846         290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS  369 (392)
Q Consensus       290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~  369 (392)
                      +|+||+++|+             +.|+|++++.+||.+  |+++|. +|+.++|+|.++               |++|++
T Consensus        81 ~G~iCl~~l~-------------~~w~p~~~i~~Il~~--i~~ll~-~p~~~~~~n~ea---------------~~~~~~  129 (147)
T d1z2ua1          81 NGSICLDILR-------------SQWSPALTISKVLLS--ICSLLC-DPNPDDPLVPEI---------------ARIYKT  129 (147)
T ss_dssp             TCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHHHH
T ss_pred             CCCEeeehhc-------------ccCCCCCCHHHHHHH--HHHHhc-cCCCCCcccHHH---------------HHHHHH
Confidence            9999999987             579999999999998  999885 899999999776               999999


Q ss_pred             CHHHHHHHhcC
Q psy2846         370 DQWRYFVLTRF  380 (392)
Q Consensus       370 d~~~y~~~~r~  380 (392)
                      |+++|...+|.
T Consensus       130 ~~~~f~~~~~~  140 (147)
T d1z2ua1         130 DRERYNQLARE  140 (147)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999988764

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=3.5e-37  Score=271.16  Aligned_cols=140  Identities=33%  Similarity=0.592  Sum_probs=133.9

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      ++|.|||++||++|+++++.||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||+
T Consensus         2 t~A~kRl~~El~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPnI~   81 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPGVSASPLPDNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFHPNVY   81 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             CHHHHHHHHHHHHHhHCCCCCEEEEECCCcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCccCCC
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      .+|.||+++|.             +.|+|+++|.+||.+  |+++|. .|+.++|+|.++               |++|+
T Consensus        82 ~~G~icl~~l~-------------~~W~p~~~i~~il~~--i~~ll~-~p~~~~~~n~ea---------------a~l~~  130 (153)
T d1ayza_          82 ANGEICLDILQ-------------NRWTPTYDVASILTS--IQSLFN-DPNPASPANVEA---------------ATLFK  130 (153)
T ss_dssp             TTSBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHT-CCCCSSCSSHHH---------------HHHHH
T ss_pred             CCCcccccccc-------------ccCCCcCcHHHHHHH--HHHHHc-CCCCCCcHHHHH---------------HHHHH
Confidence            99999999986             789999999999998  999885 999999999766               99999


Q ss_pred             hCHHHHHHHhc
Q psy2846         369 SDQWRYFVLTR  379 (392)
Q Consensus       369 ~d~~~y~~~~r  379 (392)
                      +|+++|...+|
T Consensus       131 ~~~~~f~~~~~  141 (153)
T d1ayza_         131 DHKSQYVKRVK  141 (153)
T ss_dssp             HCHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998876

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=272.75  Aligned_cols=145  Identities=29%  Similarity=0.473  Sum_probs=136.0

Q ss_pred             ccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPN  286 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPN  286 (392)
                      |+..|.+||++|++++++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+|||||
T Consensus         1 m~~~a~~~L~kE~~~l~~~~~~gi~v~p~~~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   80 (148)
T d1yrva1           1 MHGRAYLLLHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPN   80 (148)
T ss_dssp             GGCHHHHHHHHHHHHHHHHCCTTEEEEECSTTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCCTT
T ss_pred             CCHHHHHHHHHHHHHHHHCCCCCEEEEECCCcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeeccccccCc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846         287 VS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD  365 (392)
Q Consensus       287 V~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~  365 (392)
                      |+ .+|+||+++|++           .++|+|++||++||.+  |+++|. +|+.++|+|.+|               |+
T Consensus        81 V~~~~G~iC~~~l~~-----------~~~W~p~~tl~~vL~~--I~~ll~-~p~~~~p~n~ea---------------a~  131 (148)
T d1yrva1          81 VDPHTGQPCIDFLDN-----------PEKWNTNYTLSSILLA--LQVMLS-NPVLENPVNLEA---------------AR  131 (148)
T ss_dssp             BCTTTCCBCCHHHHC-----------GGGCCTTCCHHHHHHH--HHHHHT-SCCTTSCSCHHH---------------HH
T ss_pred             eecCcccccccccCc-----------hhhcCccccHHHHHHH--HHHHHh-CCCCCCchhHHH---------------HH
Confidence            99 589999999852           3689999999999997  999885 999999999766               99


Q ss_pred             HHHhCHHHHHHHhcC
Q psy2846         366 LISSDQWRYFVLTRF  380 (392)
Q Consensus       366 l~~~d~~~y~~~~r~  380 (392)
                      +|++|+++|+..+|.
T Consensus       132 ly~~~~~~f~~~~r~  146 (148)
T d1yrva1         132 ILVKDESLYRTILRL  146 (148)
T ss_dssp             HHHSCHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHh
Confidence            999999999999884

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=4.6e-37  Score=271.28  Aligned_cols=144  Identities=27%  Similarity=0.505  Sum_probs=136.6

Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccc
Q psy2846         206 EDNTWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHP  285 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHP  285 (392)
                      .++..+.|||++||++|++++++||++.+.++|+++|+++|.||+||||+||.|++.|.||++||++||+|+|.|+||||
T Consensus         2 ~~~~~~~kRl~kEl~~l~~~~~~gi~v~p~~~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   81 (151)
T d1zdna1           2 NLPPHIIRLVYKEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHP   81 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCT
T ss_pred             CCCHHHHHHHHHHHHHHHhCCCCCeEEEEcCcchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCCc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHH
Q psy2846         286 NVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIAD  365 (392)
Q Consensus       286 NV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~  365 (392)
                      ||+.+|.||++++.             ++|+|+++|.+||++  |+++|. +|+.++|+|.++               |+
T Consensus        82 nI~~~G~ic~~~l~-------------~~W~p~~~l~~il~~--i~~~l~-~p~~~~p~n~ea---------------a~  130 (151)
T d1zdna1          82 NVGANGEICVNVLK-------------RDWTAELGIRHVLLT--IKCLLI-HPNPESALNEEA---------------GR  130 (151)
T ss_dssp             TBCTTSBBCHHHHT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCGGGCSSHHH---------------HH
T ss_pred             eecCCCCccccccc-------------ccCCccccHHHHHHH--HHHHHh-CCCCCchhhHHH---------------HH
Confidence            99999999999986             789999999999997  999885 999999999766               99


Q ss_pred             HHHhCHHHHHHHhcC
Q psy2846         366 LISSDQWRYFVLTRF  380 (392)
Q Consensus       366 l~~~d~~~y~~~~r~  380 (392)
                      +|++|+++|+..+|-
T Consensus       131 ~~~~~~~~f~~~ar~  145 (151)
T d1zdna1         131 LLLENYEEYAARARL  145 (151)
T ss_dssp             HHHHCHHHHHHHHHH
T ss_pred             HHHHCHHHHHHHHHH
Confidence            999999999998873

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=1e-36  Score=271.09  Aligned_cols=150  Identities=27%  Similarity=0.469  Sum_probs=132.5

Q ss_pred             HHHHHHHHHHhhcCCCCCceeeeCC-CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846         212 HFRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH  290 (392)
Q Consensus       212 ~kRL~kEl~~L~k~~p~gI~v~p~~-~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~  290 (392)
                      ..||++|+++|++++++||++.+.+ +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+||||||+.+
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI~~~   81 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKE   81 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTBCTT
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCCCCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCcccCCC
Confidence            4699999999999999999999865 579999999999999999999999999999999999999999999999999999


Q ss_pred             CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846         291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD  370 (392)
Q Consensus       291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d  370 (392)
                      |.||+++|++.+.+.+......++|+|+++|.+||++  |+++|. +|+.++|+|.++               |++|++|
T Consensus        82 G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~--i~~ll~-~p~~~~p~n~ea---------------a~l~~~~  143 (161)
T d1pzva_          82 GNVCISILHDPGDDKWGYERPEERWLPVHTVETILLS--VISMLT-DPNFESPANVDA---------------AKMQREN  143 (161)
T ss_dssp             SBBCCGGGCCC---------CCSSCCTTCCHHHHHHH--HHHHHH-SCCCSSCSCHHH---------------HHHHHTC
T ss_pred             CccchhhcCCcccccccccccccccCccccHHHHHHH--HHHHHh-CCCCCCccCHHH---------------HHHHHHC
Confidence            9999999997776666666667889999999999997  999885 899999999766               9999999


Q ss_pred             HHHHHHHhc
Q psy2846         371 QWRYFVLTR  379 (392)
Q Consensus       371 ~~~y~~~~r  379 (392)
                      +++|...+|
T Consensus       144 ~~~f~~~a~  152 (161)
T d1pzva_         144 YAEFKKKVA  152 (161)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998875

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=8.3e-37  Score=269.76  Aligned_cols=139  Identities=32%  Similarity=0.542  Sum_probs=132.9

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH  290 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~  290 (392)
                      +.|||++|+++|++++++||++.+.++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+||||||+.+
T Consensus         4 ~~rRl~~E~~~l~~~~~~g~~~~p~~~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~   83 (152)
T d1jata_           4 LPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRL   83 (152)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEEcCCccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCCCcCCCC
Confidence            45899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846         291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD  370 (392)
Q Consensus       291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d  370 (392)
                      |.||++++.             +.|+|+++|.+||.+  |+++|. +|+.++|+|.+|               |++|++|
T Consensus        84 G~icl~~~~-------------~~W~p~~~i~~il~~--i~~ll~-~P~~~~p~n~ea---------------a~l~~~d  132 (152)
T d1jata_          84 GRICLDVLK-------------TNWSPALQIRTVLLS--IQALLA-SPNPNDPLANDV---------------AEDWIKN  132 (152)
T ss_dssp             CCBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSTTCCTT---------------HHHHHHC
T ss_pred             CCeeecccc-------------ccCCchhHHHHHHHH--HHHHHc-CCCCCCcccHHH---------------HHHHHHC
Confidence            999999987             689999999999997  999995 899999999988               9999999


Q ss_pred             HHHHHHHhcC
Q psy2846         371 QWRYFVLTRF  380 (392)
Q Consensus       371 ~~~y~~~~r~  380 (392)
                      +++|...+|-
T Consensus       133 ~~~f~~~~r~  142 (152)
T d1jata_         133 EQGAKAKARE  142 (152)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999998873

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=2.9e-36  Score=265.15  Aligned_cols=138  Identities=31%  Similarity=0.563  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCC
Q psy2846         212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHG  291 (392)
Q Consensus       212 ~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G  291 (392)
                      .|||++|+++|+++++.||++.+.++|+++|+++|.||++|||+||.|+|+|.||++||++||+|+|.|++|||||+.+|
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni~~~G   83 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLG   83 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEECSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTBCTTC
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEECCCcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceECCCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhCH
Q psy2846         292 DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSDQ  371 (392)
Q Consensus       292 ~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d~  371 (392)
                      .||+++|.             +.|+|++++.+||.+  |+++| .+|+.++|+|.++               |++|++|+
T Consensus        84 ~icl~~l~-------------~~w~p~~~i~~il~~--i~~ll-~~p~~~~p~n~ea---------------a~l~~~~~  132 (149)
T d1j7db_          84 RICLDILK-------------DKWSPALQIRTVLLS--IQALL-SAPNPDDPLANDV---------------AEQWKTNE  132 (149)
T ss_dssp             BBCCGGGT-------------TSCCTTSCHHHHHHH--HHHHH-HSCCTTCTTCCSH---------------HHHHHHCH
T ss_pred             cEehHHhc-------------CCCCCCccHHHHHHH--HHHHH-hCCCCCChhhHHH---------------HHHHHHCH
Confidence            99999987             679999999999997  99988 5999999999888               99999999


Q ss_pred             HHHHHHhcC
Q psy2846         372 WRYFVLTRF  380 (392)
Q Consensus       372 ~~y~~~~r~  380 (392)
                      ++|...+|.
T Consensus       133 ~~f~~~ar~  141 (149)
T d1j7db_         133 AQAIETARA  141 (149)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999988774

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=1.3e-36  Score=267.03  Aligned_cols=137  Identities=28%  Similarity=0.517  Sum_probs=129.8

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH  290 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~  290 (392)
                      +.|||++|+++|++++++||++.+.++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|+||||||+.+
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~   81 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQ   81 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEETTEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTTBCTT
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCCcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCcccCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846         291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD  370 (392)
Q Consensus       291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d  370 (392)
                      |.||+++|.             ++|+|+++|++||++  |+++|. +|+.++|+|.++               |++|+ |
T Consensus        82 G~icl~~l~-------------~~W~p~~~i~~il~~--i~~ll~-~p~~~~p~n~~a---------------a~l~~-n  129 (146)
T d1i7ka_          82 GNISLDILK-------------EKWSALYDVRTILLS--IQSLLG-EPNIDSPLNTHA---------------AELWK-N  129 (146)
T ss_dssp             CBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------HHHTT-S
T ss_pred             Ccccccccc-------------ccCCCCcCHHHHHHH--HHHHHh-CCCCCCchhHHH---------------HHHhh-C
Confidence            999999986             789999999999997  999885 999999999766               89995 8


Q ss_pred             HHHHHHHhc
Q psy2846         371 QWRYFVLTR  379 (392)
Q Consensus       371 ~~~y~~~~r  379 (392)
                      +++|+..+|
T Consensus       130 ~~~f~k~~~  138 (146)
T d1i7ka_         130 PTAFKKYLQ  138 (146)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987765

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=2.7e-36  Score=267.65  Aligned_cols=142  Identities=28%  Similarity=0.487  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCC-----CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDN-----KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~-----dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      .|.+||++|+++|+++++.|+++.|.++     |+++|+++|.||+||||+||.|+|+|.||++||++||+|+|.|+|||
T Consensus         2 ~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   81 (156)
T d2uyza1           2 IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFH   81 (156)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeecccccc
Confidence            5899999999999999999999998754     89999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHH
Q psy2846         285 PNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIA  364 (392)
Q Consensus       285 PNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A  364 (392)
                      |||+.+|.||+++|..           .++|+|++||.+||.+  |+++|. +|+.++|+|.++               |
T Consensus        82 PnV~~~G~icl~~l~~-----------~~~W~p~~ti~~il~~--i~~ll~-~p~~~~p~n~ea---------------a  132 (156)
T d2uyza1          82 PNVYPSGTVSLSILEE-----------DKDWRPAITIKQILLG--IQELLN-EPNIQDPAQAEA---------------Y  132 (156)
T ss_dssp             TTBCTTSBBCCGGGCT-----------TTTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH---------------H
T ss_pred             ccccccceeeecccCc-----------ccccCCcccHHHHHHH--HHHHhc-CCCCCCccCHHH---------------H
Confidence            9999999999999862           2689999999999997  999885 999999999776               9


Q ss_pred             HHHHhCHHHHHHHhcC
Q psy2846         365 DLISSDQWRYFVLTRF  380 (392)
Q Consensus       365 ~l~~~d~~~y~~~~r~  380 (392)
                      ++|++|+++|...+|.
T Consensus       133 ~~~~~~~~~f~~~vr~  148 (156)
T d2uyza1         133 TIYCQNRVEYEKRVRA  148 (156)
T ss_dssp             HHHHHCHHHHHHHHHH
T ss_pred             HHHHHCHHHHHHHHHH
Confidence            9999999999998874

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=2.1e-36  Score=268.45  Aligned_cols=139  Identities=30%  Similarity=0.523  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVS  288 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~  288 (392)
                      ....|||++|+++|++++++||++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+
T Consensus         8 ~~~~kRl~kEl~~l~~~~~~gi~~~p~~~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   87 (156)
T d2e2ca_           8 HSVSKRLQQELRTLLMSGDPGITAFPDGDNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHPNVD   87 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESSSCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBC
T ss_pred             chHHHHHHHHHHHHhHCCCCCEEEEECCCcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCCCCC
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         289 RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       289 ~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                      .+|.||+++|.             +.|+|+++|.+||++  |+++| .+|+.++|+|.++               |++|+
T Consensus        88 ~~G~icl~~l~-------------~~Wsp~~~i~~vl~~--i~~ll-~~P~~~~p~n~~a---------------a~l~~  136 (156)
T d2e2ca_          88 QSGNICLDILK-------------ENWTASYDVRTILLS--LQSLL-GEPNNASPLNAQA---------------ADMWS  136 (156)
T ss_dssp             TTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHT-TSCCCSSCSCHHH---------------HHHTT
T ss_pred             CCCCccccccC-------------CCCCCcccHHHHHHH--HHHHH-hCCCCCChhhHHH---------------HHHHH
Confidence            99999999996             789999999999997  99988 5999999999766               88885


Q ss_pred             hCHHHHHHHhc
Q psy2846         369 SDQWRYFVLTR  379 (392)
Q Consensus       369 ~d~~~y~~~~r  379 (392)
                       |+.+|+.++|
T Consensus       137 -n~~~y~k~~~  146 (156)
T d2e2ca_         137 -NQTEYKKVLH  146 (156)
T ss_dssp             -CHHHHHHHHH
T ss_pred             -CHHHHHHHHH
Confidence             6667887765

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.4e-35  Score=261.96  Aligned_cols=143  Identities=28%  Similarity=0.539  Sum_probs=133.5

Q ss_pred             ccHHHHHHHHHHHHHhhcC---CCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc
Q psy2846         207 DNTWRHFRLRKEYNDIKLD---PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF  283 (392)
Q Consensus       207 ~~s~a~kRL~kEl~~L~k~---~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If  283 (392)
                      |++.+.+||++|++++++.   ...+|++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+||
T Consensus         1 Ms~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (154)
T d2bepa1           1 MANIAVQRIKREFKEVLKSEETSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIW   80 (154)
T ss_dssp             CCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECSSSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             CchHHHHHHHHHHHHHHHCCCCCCCcEEEEcCCCChhheEeeEecCccccccCCeeEEEEeccccccCCCCcceecccCC
Confidence            4678999999999999886   4578999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccC-CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHH
Q psy2846         284 HPNVSR-HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTI  362 (392)
Q Consensus       284 HPNV~~-~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~  362 (392)
                      ||||+. +|.||++++.             +.|+|++||++||.+  |+++|. +|+.++|+|.++              
T Consensus        81 Hpni~~~~g~ic~~~~~-------------~~W~p~~~i~~il~~--i~~ll~-~p~~~~p~n~ea--------------  130 (154)
T d2bepa1          81 HPNISSVTGAICLDILK-------------DQWAAAMTLRTVLLS--LQALLA-AAEPDDPQDAVV--------------  130 (154)
T ss_dssp             BTTBCTTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSCHHH--------------
T ss_pred             CCCeeCCCCcccccccc-------------ccCCCcCCHHHHHHH--HHHHHc-CCCCCCchHHHH--------------
Confidence            999996 8999999886             789999999999997  999885 999999999776              


Q ss_pred             HHHHHHhCHHHHHHHhcC
Q psy2846         363 IADLISSDQWRYFVLTRF  380 (392)
Q Consensus       363 ~A~l~~~d~~~y~~~~r~  380 (392)
                       |++|++|++.|+..+|.
T Consensus       131 -a~l~~~~~~~f~~~a~~  147 (154)
T d2bepa1         131 -ANQYKQNPEMFKQTARL  147 (154)
T ss_dssp             -HHHHHHCHHHHHHHHHH
T ss_pred             -HHHHHHCHHHHHHHHHH
Confidence             99999999999988874

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=1.5e-35  Score=260.19  Aligned_cols=139  Identities=31%  Similarity=0.527  Sum_probs=130.0

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeee-CCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQP-LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p-~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      |.|||++|+++|++++++||++.+ .++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+.
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   81 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISS   81 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCSSCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCCCchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCcccC
Confidence            789999999999999999999986 4578999999999999999999999999999999999999999999999999996


Q ss_pred             -CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHH
Q psy2846         290 -HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLIS  368 (392)
Q Consensus       290 -~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~  368 (392)
                       +|.+|++++.             +.|+|++||.+||++  |+++|. +|+.++|+|.+|               |++|+
T Consensus        82 ~~~~~~~~~~~-------------~~W~p~~ti~~il~~--i~~ll~-~p~~~~p~n~ea---------------a~~~~  130 (149)
T d1fzya_          82 VTGAICLDILK-------------NAWSPVITLKSALIS--LQALLQ-SPEPNDPQDAEV---------------AQHYL  130 (149)
T ss_dssp             TTCCBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCTTSCSSHHH---------------HHHHH
T ss_pred             Ccceeechhhc-------------ccCCCcCCHHHHHHH--HHHHHh-CCCCCChhHHHH---------------HHHHH
Confidence             7889999876             789999999999997  999985 999999999776               99999


Q ss_pred             hCHHHHHHHhcC
Q psy2846         369 SDQWRYFVLTRF  380 (392)
Q Consensus       369 ~d~~~y~~~~r~  380 (392)
                      +|+++|...+|.
T Consensus       131 ~~~~~f~~~~~~  142 (149)
T d1fzya_         131 RDRESFNKTAAL  142 (149)
T ss_dssp             HCHHHHHHHHHH
T ss_pred             HCHHHHHHHHHH
Confidence            999999988773

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=1.8e-35  Score=259.93  Aligned_cols=139  Identities=29%  Similarity=0.502  Sum_probs=129.3

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeeeCC-CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQPLD-NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p~~-~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      |.+||++|+++|++++++||.+.+.+ +|++.|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||+.
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HpnI~~   79 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDE   79 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECSSCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTTBCT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCCCceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcceECC
Confidence            47899999999999999999998875 5899999866 899999999999999999999999999999999999999999


Q ss_pred             CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHh
Q psy2846         290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISS  369 (392)
Q Consensus       290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~  369 (392)
                      +|.||+++|.            .+.|+|++||.+||.+  |+++|. +|+.++|+|.++               |++|++
T Consensus        80 ~G~icl~~l~------------~~~W~p~~~i~~il~~--i~~ll~-~p~~~~p~n~ea---------------a~~~~~  129 (150)
T d1wzva1          80 NGQICLPIIS------------SENWKPCTKTCQVLEA--LNVLVN-RPNIREPLRMDL---------------ADLLTQ  129 (150)
T ss_dssp             TCBCCCGGGC------------TTTCCTTCCHHHHHHH--HHHHHH-SCCSSSCSSHHH---------------HHHHHH
T ss_pred             CCCccccccc------------ccCCCchhHHHHHHHH--HHHHHh-CCCCCCchHHHH---------------HHHHHH
Confidence            9999999997            4689999999999997  999885 899999999665               999999


Q ss_pred             CHHHHHHHhcC
Q psy2846         370 DQWRYFVLTRF  380 (392)
Q Consensus       370 d~~~y~~~~r~  380 (392)
                      |+++|...+|.
T Consensus       130 d~~~f~~~a~~  140 (150)
T d1wzva1         130 NPELFRKNAEE  140 (150)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            99999998875

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=258.40  Aligned_cols=138  Identities=26%  Similarity=0.482  Sum_probs=128.0

Q ss_pred             HHHHHHHHHHhhcCCCCCceeeeC-CCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCC
Q psy2846         212 HFRLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRH  290 (392)
Q Consensus       212 ~kRL~kEl~~L~k~~p~gI~v~p~-~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~  290 (392)
                      +|||++|+++|+++++.|+.+.+. ++|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|+||||||+.+
T Consensus         1 ~rRl~kEl~~l~~~~~~~~~~~~~~~~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~~~   79 (144)
T d1c4zd_           1 SRRLMKELEEIRKCGMKNFRNIQVDEANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNIDEK   79 (144)
T ss_dssp             CTTHHHHHTTCSSSCCSSCEEECSSCSSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBCTT
T ss_pred             CHHHHHHHHHHHhCCCCCeEEEECCCCcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCccC
Confidence            379999999999999999987775 56899999998 9999999999999999999999999999999999999999999


Q ss_pred             CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846         291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD  370 (392)
Q Consensus       291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d  370 (392)
                      |.||+++|+            .+.|+|++++.+||.+  |+++|. +|+.++|+|.++               |++|++|
T Consensus        80 G~icl~~l~------------~~~w~p~~~i~~il~~--i~~ll~-~p~~~~p~n~~a---------------a~~~~~d  129 (144)
T d1c4zd_          80 GQVCLPVIS------------AENWKPATKTDQVIQS--LIALVN-DPQPEHPLRADL---------------AEEYSKD  129 (144)
T ss_dssp             CBBCCTTTS------------SSSCCTTCCHHHHHHH--HHHHHH-SCCCSSCSCHHH---------------HHHHHTC
T ss_pred             Ccccccccc------------CCCCCCcccHHHHHHH--HHHHHh-CCCCCCcccHHH---------------HHHHHHH
Confidence            999999997            4689999999999998  999885 899999999766               9999999


Q ss_pred             HHHHHHHhcC
Q psy2846         371 QWRYFVLTRF  380 (392)
Q Consensus       371 ~~~y~~~~r~  380 (392)
                      ++.|...+|-
T Consensus       130 ~~~f~~~a~~  139 (144)
T d1c4zd_         130 RKKFCKNAEE  139 (144)
T ss_dssp             SSTTHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999887763

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=2.1e-34  Score=256.82  Aligned_cols=139  Identities=33%  Similarity=0.603  Sum_probs=126.0

Q ss_pred             HHHHHHHHHHHhhc-------------CCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCc
Q psy2846         211 RHFRLRKEYNDIKL-------------DPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVK  277 (392)
Q Consensus       211 a~kRL~kEl~~L~k-------------~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~  277 (392)
                      +.+||+||+++|++             ++..|+++.+.++|+++|+++|.||+||||+||.|+|+|.||++||++||+|+
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~V~   81 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVGGDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMK   81 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecCCccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCCcEEE
Confidence            46899999999976             45568999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccc-CCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhh
Q psy2846         278 FITRIFHPNVS-RHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRAC  356 (392)
Q Consensus       278 F~T~IfHPNV~-~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~  356 (392)
                      |.|++|||||+ .+|.||++++.             +.|+|++||.+||.+  |+++|. +|+.++|+|.++        
T Consensus        82 F~t~i~HPni~~~~G~icl~~l~-------------~~W~p~~si~~iL~~--I~~ll~-~P~~~dp~n~ea--------  137 (161)
T d2f4za1          82 FVTKIWHPNISSQTGAICLDILK-------------HEWSPALTIRTALLS--IQAMLA-DPVPTDPQDAEV--------  137 (161)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGT-------------TTCCTTSCHHHHHHH--HHHHHH-SCCTTSCSCHHH--------
T ss_pred             ecCCCCCCceECCCCCeecCccc-------------ccCCCcccHHHHHHH--HHHHHh-CCCCCCchhHHH--------
Confidence            99999999996 58999999986             679999999999998  999995 899999999766        


Q ss_pred             hhhHHHHHHHHHhCHHHHHHHhcC
Q psy2846         357 TRWFTIIADLISSDQWRYFVLTRF  380 (392)
Q Consensus       357 ~~w~~~~A~l~~~d~~~y~~~~r~  380 (392)
                             |++|++|+++|...+|.
T Consensus       138 -------a~l~~~d~~~y~~~v~~  154 (161)
T d2f4za1         138 -------AKMMIENHPLFVQTAKL  154 (161)
T ss_dssp             -------HHHHHHCHHHHHHHHHH
T ss_pred             -------HHHHHHCHHHHHHHHHH
Confidence                   99999999999888763

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=2.7e-34  Score=245.75  Aligned_cols=121  Identities=32%  Similarity=0.598  Sum_probs=107.2

Q ss_pred             HHHHHHHHHhhcCCCCCceeeeC-CCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccCCC
Q psy2846         213 FRLRKEYNDIKLDPPDGIQAQPL-DNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSRHG  291 (392)
Q Consensus       213 kRL~kEl~~L~k~~p~gI~v~p~-~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~~G  291 (392)
                      -||+||++++++++++||++.+. ++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|||||+.+|
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~~~G   81 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNG   81 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESSTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBCTTC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCCCCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccCCCC
Confidence            48999999999999999999885 56899999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHh
Q psy2846         292 DLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQ  335 (392)
Q Consensus       292 ~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~  335 (392)
                      .||+++|+.++.+....+...++|+|++||++||++  |+++|.
T Consensus        82 ~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~--i~~ll~  123 (125)
T d2awfa1          82 DVCISILHEPGEDKYGYEKPEERWLPIHTVETIMIS--VISMLA  123 (125)
T ss_dssp             BBCCGGGSCC---------CTTSCCTTCCHHHHHHH--HHHHHS
T ss_pred             EEEeccccCccccccccccccCCcCccCcHHHHHHH--HHHHhh
Confidence            999999998887778888889999999999999998  999884

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=9.4e-34  Score=251.54  Aligned_cols=138  Identities=21%  Similarity=0.404  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHHHHhhcCCCCCceee-eCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDPPDGIQAQ-PLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNV  287 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~p~gI~v~-p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV  287 (392)
                      +.|.+||++|+++|++.+  ++.+. +.++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.|+||||||
T Consensus         2 ~~a~~Rl~kEl~~l~~~~--~~~i~~~~~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~HPnv   78 (157)
T d1y8xa1           2 SAAQLRIQKDINELNLPK--TCDISFSDPDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNI   78 (157)
T ss_dssp             CHHHHHHHHHHHTCCCCT--TEEEECSSTTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             CHHHHHHHHHHHHhCCCC--CCcEEEcCCCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCCccc
Confidence            679999999999998654  44444 3558999999999 8999999999999999999999999999999999999999


Q ss_pred             cCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHH
Q psy2846         288 SRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLI  367 (392)
Q Consensus       288 ~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~  367 (392)
                      +.+|.||++++.             +.|+|+++|++||.+  |+++|. +|+.++|+|.++               |++|
T Consensus        79 ~~~G~ic~~~~~-------------~~W~p~~~i~~il~~--I~~ll~-~Pn~~~p~n~ea---------------a~l~  127 (157)
T d1y8xa1          79 DLEGNVCLNILR-------------EDWKPVLTINSIIYG--LQYLFL-EPNPEDPLNKEA---------------AEVL  127 (157)
T ss_dssp             CTTCBBCCGGGT-------------TTCCTTCCHHHHHHH--HHHHHH-SCCCSSCSCHHH---------------HHHH
T ss_pred             cccceeeeeecc-------------cCCCCCCcHHHHHHH--HHHHHc-CCCCcChHHHHH---------------HHHH
Confidence            999999999886             689999999999997  999885 899999999766               9999


Q ss_pred             HhCHHHHHHHhcC
Q psy2846         368 SSDQWRYFVLTRF  380 (392)
Q Consensus       368 ~~d~~~y~~~~r~  380 (392)
                      ++|+++|+..+|-
T Consensus       128 ~~~~~~f~~~v~~  140 (157)
T d1y8xa1         128 QNNRRLFEQNVQR  140 (157)
T ss_dssp             HSCHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHH
Confidence            9999999988774

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-33  Score=238.96  Aligned_cols=109  Identities=28%  Similarity=0.536  Sum_probs=102.5

Q ss_pred             HHHHHHHHHHHhhcCCCCCceeee--CCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc--cccc
Q psy2846         211 RHFRLRKEYNDIKLDPPDGIQAQP--LDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI--FHPN  286 (392)
Q Consensus       211 a~kRL~kEl~~L~k~~p~gI~v~p--~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I--fHPN  286 (392)
                      +.|||++|+++|++++++|+++.+  .++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++  ||||
T Consensus         4 ~~kRL~kEl~~l~~~~~~~~~~~~~~~~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~~Hpn   83 (117)
T d2a7la1           4 MQKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPH   83 (117)
T ss_dssp             SCHHHHHHHHHHHHSCCTTCCCCTTCCCCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCCBTT
T ss_pred             HHHHHHHHHHHHhhCCCCCeEEEEecCCCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeCCCcccccc
Confidence            358999999999999999998874  557899999999999999999999999999999999999999999986  9999


Q ss_pred             ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHH
Q psy2846         287 VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHI  334 (392)
Q Consensus       287 V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL  334 (392)
                      |+.+|+||+++|+             ++|+|++||++||++  |+++|
T Consensus        84 v~~~G~iCl~~l~-------------~~Wsp~~ti~~vl~~--i~~lL  116 (117)
T d2a7la1          84 VYSNGHICLSILT-------------EDWSPALSVQSVCLS--IISML  116 (117)
T ss_dssp             BCTTCBBCCGGGT-------------TTCCTTSCHHHHHHH--HHHHT
T ss_pred             CcCCCeEEeecCc-------------CCCCCcCcHHHHHHH--HHHHh
Confidence            9999999999997             789999999999998  99877

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=99.98  E-value=9.8e-33  Score=231.18  Aligned_cols=106  Identities=24%  Similarity=0.430  Sum_probs=102.8

Q ss_pred             HHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccc-ccccccCCCc
Q psy2846         214 RLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRI-FHPNVSRHGD  292 (392)
Q Consensus       214 RL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~I-fHPNV~~~G~  292 (392)
                      ||++|++++++++++|+++.+.++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+.+|+
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~~~G~   81 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHPNNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGD   81 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECTTCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBCTTSB
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcCCcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceECCCCe
Confidence            999999999999999999999999999999999999999999999999999999999999999999986 8999999999


Q ss_pred             eeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHH
Q psy2846         293 LSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHI  334 (392)
Q Consensus       293 VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL  334 (392)
                      ||+++|+             ++|+|++||++||++  |+++|
T Consensus        82 iCl~il~-------------~~Wsp~~ti~~vl~~--i~~ll  108 (109)
T d2fo3a1          82 ICLSLLG-------------DDYNPSLSISGLVLS--IISML  108 (109)
T ss_dssp             BCCGGGT-------------TTCCTTCCHHHHHHH--HHHHH
T ss_pred             EEeeccc-------------CCCCccCCHHHHHHH--HHHHh
Confidence            9999997             789999999999998  99887

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=99.97  E-value=2e-32  Score=243.32  Aligned_cols=135  Identities=26%  Similarity=0.481  Sum_probs=120.8

Q ss_pred             HHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC-C
Q psy2846         212 HFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR-H  290 (392)
Q Consensus       212 ~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~-~  290 (392)
                      .|||++|+++|.+++..   +.+ ++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+||||||+. +
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~-~d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI~~~~   77 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYP-SDTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERS   77 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEE-CSSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTBCTTT
T ss_pred             chHHHHHHHHHhcCCCc---CCC-CCCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCCccCc
Confidence            58999999999987753   555 479999999999999999999999999999999999999999999999999985 8


Q ss_pred             CceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchhhhhhhhhhhhhHHHHHHHHHhC
Q psy2846         291 GDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLSLCSVSRACTRWFTIIADLISSD  370 (392)
Q Consensus       291 G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a~~~~~~~~~~w~~~~A~l~~~d  370 (392)
                      |.||+++|.             ++|+|.+++.++|+. .|+.++ ..|+.++|+|.+|               |++|++|
T Consensus        78 G~vcl~il~-------------~~W~p~~~i~~il~~-~i~~ll-~~P~~~~p~N~ea---------------a~l~~~n  127 (158)
T d1yf9a1          78 GSVCLDVIN-------------QTWTPMYQLENIFDV-FLPQLL-RYPNPSDPLNVQA---------------AHLLHAD  127 (158)
T ss_dssp             CBBCHHHHH-------------HHCCTTCCTHHHHHT-HHHHHH-HSCCSSCCSCHHH---------------HHHHHHC
T ss_pred             ccccccccc-------------cccCchHhhhhHHHH-HHHHHh-cCCCCCcchhHHH---------------HHHHHHC
Confidence            999999986             689999999999975 244555 6999999999776               9999999


Q ss_pred             HHHHHHHhcC
Q psy2846         371 QWRYFVLTRF  380 (392)
Q Consensus       371 ~~~y~~~~r~  380 (392)
                      +++|...+|.
T Consensus       128 ~~~f~~~~k~  137 (158)
T d1yf9a1         128 RVGFDALLRE  137 (158)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988764

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=99.97  E-value=6.7e-31  Score=228.99  Aligned_cols=128  Identities=23%  Similarity=0.394  Sum_probs=113.3

Q ss_pred             cHHHHHHHHHHHHHhhcCCCCCceeeeCC----CCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccc
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPDGIQAQPLD----NKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIF  283 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~gI~v~p~~----~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~If  283 (392)
                      ...|.+||+|||+++++++++++.+.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++|
T Consensus         3 ~~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~   82 (139)
T d2a4da1           3 KVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN   82 (139)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             ccchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCcc
Confidence            46899999999999999999987776643    37999999999999999999999999999999999999999999999


Q ss_pred             cccccC-CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCCchh
Q psy2846         284 HPNVSR-HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLDDLS  348 (392)
Q Consensus       284 HPNV~~-~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln~~a  348 (392)
                      ||||+. +|.+|++.|..           .++|+|++||++||++  |+++|.+.+|.++|++.+.
T Consensus        83 HpnV~~~~g~~~~~~l~~-----------l~~Wsp~~ti~~iL~~--i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          83 MNGVNSSNGVVDPRAISV-----------LAKWQNSYSIKVVLQE--LRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             CTTBCTTTCBBCGGGSHH-----------HHTCCTTCCHHHHHHH--HHHHHTSTTTTTCCCCCTT
T ss_pred             cccCcCCCCEEcceecCc-----------ccCCCccCcHHHHHHH--HHHHHCCCCCCCCCCCCCc
Confidence            999985 57787776641           1479999999999997  9999987678899998775

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=230.62  Aligned_cols=117  Identities=26%  Similarity=0.420  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhhcCCCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCccccccccccccC
Q psy2846         210 WRHFRLRKEYNDIKLDPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFHPNVSR  289 (392)
Q Consensus       210 ~a~kRL~kEl~~L~k~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfHPNV~~  289 (392)
                      +|.|||++|+++|++++++|+++.+.++|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++|||++ 
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~~~~-   79 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLPSNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCN-   79 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEETTEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSBCTT-
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcCcccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCcccCCC-
Confidence            4789999999999999999999999999999999999999999999999999999999999999999999998888775 


Q ss_pred             CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCC
Q psy2846         290 HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVR  341 (392)
Q Consensus       290 ~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~  341 (392)
                       |++|+.++.          ...++|+|++||.+||++  |+++|. +|+.+
T Consensus        80 -g~~~~~~l~----------~~~~~Wsp~~ti~~il~~--i~~ll~-~p~p~  117 (157)
T d2f4wa1          80 -TRLCLSITD----------FHPDTWNPAWSVSTILTG--LLSFMV-EKGPT  117 (157)
T ss_dssp             -SCBC--------------------CCTTCCHHHHHHH--HHHHHH-SCCCC
T ss_pred             -CCeeeeecc----------ccCCCCCccCcHHHHHHH--HHHHcc-CCCCC
Confidence             667776654          124789999999999997  999885 66654

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=99.96  E-value=9.6e-31  Score=227.39  Aligned_cols=122  Identities=27%  Similarity=0.427  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHHhhcCC-CCCceeeeCCC---CccEEEEEEecCCCCCCCCcEEEEEEEeCCCCCCCCCcCcccccccc
Q psy2846         209 TWRHFRLRKEYNDIKLDP-PDGIQAQPLDN---KRCHWMATIAGPVASPYEGGVFYLYIRIPFSYPMHPPKVKFITRIFH  284 (392)
Q Consensus       209 s~a~kRL~kEl~~L~k~~-p~gI~v~p~~~---dl~~W~v~I~GP~~TPYegG~F~~~I~fP~dYP~~PP~V~F~T~IfH  284 (392)
                      ..|++||++||++++++. +.++++...++   |+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+|||
T Consensus         3 ~p~~~RL~kEl~~~~k~~~~~~~~~~~~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i~H   82 (136)
T d1jatb_           3 VPRNFRLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKINL   82 (136)
T ss_dssp             CCHHHHHHHHHHHHHC----CCEEEEESSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             CchHHHHHHHHHHHhccCCCCcEEEeecCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccccc
Confidence            468999999999999986 45566655443   49999999999999999999999999999999999999999999999


Q ss_pred             ccccC-CCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhcCCCCCCCCC
Q psy2846         285 PNVSR-HGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQRRPRVRFPLD  345 (392)
Q Consensus       285 PNV~~-~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~~P~~~~Pln  345 (392)
                      |||+. +|.||++++.            .++|+|++||++||++  |+++|. +|+.....+
T Consensus        83 pnV~~~~G~icl~~l~------------~~~Wsp~~ti~~IL~~--i~~lL~-~P~n~~~~q  129 (136)
T d1jatb_          83 PCVNPTTGEVQTDFHT------------LRDWKRAYTMETLLLD--LRKEMA-TPANKKLRQ  129 (136)
T ss_dssp             TTBCTTTCBBCTTSHH------------HHTCCTTCCHHHHHHH--HHHHHT-SHHHHTSCC
T ss_pred             cccccCCCeEECCCCc------------ccCcCccCcHHHHHHH--HHHHHc-CCCCCCCCC
Confidence            99995 6999999875            3689999999999997  999985 665444333

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.9e-31  Score=235.43  Aligned_cols=127  Identities=19%  Similarity=0.351  Sum_probs=110.4

Q ss_pred             cHHHHHHHHHHHHHhhcCCCC--C-ceeeeCCCCccEEEEEEec-CCCCCCCCcE-----------EEEEEEeCCCCCCC
Q psy2846         208 NTWRHFRLRKEYNDIKLDPPD--G-IQAQPLDNKRCHWMATIAG-PVASPYEGGV-----------FYLYIRIPFSYPMH  272 (392)
Q Consensus       208 ~s~a~kRL~kEl~~L~k~~p~--g-I~v~p~~~dl~~W~v~I~G-P~~TPYegG~-----------F~~~I~fP~dYP~~  272 (392)
                      +..|.+||++||++|+++++.  | +.+.+.++|+++|++.|.| |++|||+||.           |++.|.||++||++
T Consensus         2 s~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~~YP~~   81 (162)
T d1zuoa1           2 SVQASDRLMKELRDIYRSQSYKTGIYSVELINDSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDNFPFD   81 (162)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEETTEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTTTTSS
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCeEEeecCCCcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCCchhhh
Confidence            478999999999999988653  4 4566788899999999999 8999999986           99999999999999


Q ss_pred             CCcCcccccccccc-ccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHhc-CCCCCCCCCchh
Q psy2846         273 PPKVKFITRIFHPN-VSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQR-RPRVRFPLDDLS  348 (392)
Q Consensus       273 PP~V~F~T~IfHPN-V~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~~-~P~~~~Pln~~a  348 (392)
                      ||+|+|.|+||||| |+.+|.||+++|+            .++|+|++||++||++  |+++|.. +|+.+.|.|..+
T Consensus        82 PP~v~f~t~i~hpn~~~~~G~iCl~iL~------------~~~WsP~~ti~~IL~~--i~~ll~~~~p~~~~~~~~~~  145 (162)
T d1zuoa1          82 PPFVRVVLPVLSGGYVLGGGALCMELLT------------KQGWSSAYSIESVIMQ--INATLVKGKARVQFGANKNQ  145 (162)
T ss_dssp             CCEEEEEESCEESTTBCGGGBBCCGGGS------------TTTCCTTSCHHHHHHH--HHHHHHHTTCEECTTCCTTC
T ss_pred             cceEEEEEEeeccccccCCceeeccccc------------CCCCCCcccHHHHHHH--HHHHHcCCCCCCCCCcCHHH
Confidence            99999999999998 5789999999997            4679999999999998  9998863 344566766555

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=6.1e-17  Score=140.19  Aligned_cols=107  Identities=12%  Similarity=0.233  Sum_probs=87.6

Q ss_pred             HHHHHHHHhhcC---CCCCceeeeCCCCccEEEEEEecCCCCCCCCcEEEE--EEEeCCCCCCCCCcCccccc-----cc
Q psy2846         214 RLRKEYNDIKLD---PPDGIQAQPLDNKRCHWMATIAGPVASPYEGGVFYL--YIRIPFSYPMHPPKVKFITR-----IF  283 (392)
Q Consensus       214 RL~kEl~~L~k~---~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~F~~--~I~fP~dYP~~PP~V~F~T~-----If  283 (392)
                      +..+|+.++.+.   ..++..+...+++...|.+.|.|+.+++|+||.|.+  .|.||.+||++||.|.|.+.     ++
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~~~~~   97 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFNDGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKT   97 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTCEECC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeCCCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCccccC
Confidence            344566555544   335677777888899999999999999999999999  55589999999999988754     68


Q ss_pred             cccccCCCceeccCCCCcccccCCCCcCCCCCc-ccccHHHHHhHHHHHHHHhc
Q psy2846         284 HPNVSRHGDLSHAPAQGEIYHSNISSECAETWG-RRHRLYSILFSNSIRDHIQR  336 (392)
Q Consensus       284 HPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~Ws-P~~sI~sILlS~~IqslL~~  336 (392)
                      ||||+.+|+||+++|+              +|. +..+|.+++..  |+.++..
T Consensus        98 h~~V~~~G~V~lp~L~--------------~W~~~~s~L~~ll~~--L~~~f~~  135 (141)
T d1s1qa_          98 GKHVDANGKIYLPYLH--------------EWKHPQSDLLGLIQV--MIVVFGD  135 (141)
T ss_dssp             SSSBCTTCBBCCHHHH--------------TCCTTTCCHHHHHHH--HHHHHHH
T ss_pred             CCeECCCCCCcchhhc--------------CCCcccccHHHHHHH--HHHHhCC
Confidence            9999999999999996              454 56679999996  8888864

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1.2e-16  Score=129.01  Aligned_cols=73  Identities=23%  Similarity=0.351  Sum_probs=62.8

Q ss_pred             CCCCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC----------CccCccccchH
Q psy2846         108 TGGSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL----------FNSNITVSNWY  177 (392)
Q Consensus       108 ~~~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~----------~~~~~~~~~Wk  177 (392)
                      -..|++..||.||+.+||+|||+.||++|++|||+|+.++.++   .+|+.+|.+.|..          ..+.....+||
T Consensus        14 ~~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~---~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK   90 (102)
T d2ovrb1          14 FQRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDN---LLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWK   90 (102)
T ss_dssp             CCCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCS---HHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHH
T ss_pred             hccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHH
Confidence            3456999999999999999999999999999999999999999   9999999987643          22334456799


Q ss_pred             HHHHhh
Q psy2846         178 SVYAKL  183 (392)
Q Consensus       178 k~Y~kL  183 (392)
                      ++|.+.
T Consensus        91 ~~Y~~~   96 (102)
T d2ovrb1          91 SAYIRQ   96 (102)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            999864

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.48  E-value=2.4e-14  Score=125.18  Aligned_cols=109  Identities=9%  Similarity=0.096  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhhcCCC---CCceeeeCCCCccEEEEEEecCCCCCCCCcE---EEEEEEeCCCCCCCCCcCccccc----
Q psy2846         212 HFRLRKEYNDIKLDPP---DGIQAQPLDNKRCHWMATIAGPVASPYEGGV---FYLYIRIPFSYPMHPPKVKFITR----  281 (392)
Q Consensus       212 ~kRL~kEl~~L~k~~p---~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~---F~~~I~fP~dYP~~PP~V~F~T~----  281 (392)
                      .+|+.+|+..+.+.-+   +...+...++......+.+.|.-..+|+|+.   |.+.|.||.+||+.||.+.|.++    
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~~~~~  100 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHSDGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDM  100 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECTTSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCTTCCS
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecCCCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecCcccc
Confidence            3467777777765533   2344445566677788889999999999996   67888899999999999999765    


Q ss_pred             -------cccccccCCCceeccCCCCcccccCCCCcCCCCCcccccHHHHHhHHHHHHHHh
Q psy2846         282 -------IFHPNVSRHGDLSHAPAQGEIYHSNISSECAETWGRRHRLYSILFSNSIRDHIQ  335 (392)
Q Consensus       282 -------IfHPNV~~~G~VCL~iL~~~~~~~~~~~~~~e~WsP~~sI~sILlS~~IqslL~  335 (392)
                             ++||||+.+|+||+++|+             +-|.+..+|.++|.+  |+.++.
T Consensus       101 ~~~~~~i~~hp~Vd~~G~V~lp~L~-------------~W~~~~s~L~~ll~~--l~~~f~  146 (152)
T d1uzxa_         101 NTISSSLPIQEYIDSNGWIALPILH-------------CWDPAAMNLIMVVQE--LMSLLH  146 (152)
T ss_dssp             CC----CGGGGGBCTTSCBCCHHHH-------------SCCTTTCCHHHHHHH--HHTGGG
T ss_pred             cCCCcccccCCCCCCCCcEehHHhc-------------CCCCccCcHHHHHHH--HHHHhc
Confidence                   579999999999999997             235678899999997  888775

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.1e-14  Score=120.91  Aligned_cols=54  Identities=26%  Similarity=0.589  Sum_probs=49.3

Q ss_pred             CCccCCCCH----HHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHHHHHHHhhCCC
Q psy2846         110 GSSIHSLPP----EVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQWRYFVLTRFPL  166 (392)
Q Consensus       110 ~~~~~~LP~----eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW~~~~~~~~~~  166 (392)
                      .|++..||.    ||+++||||||+.||++|++|||+|+.+++++   .+|+++|.+.+..
T Consensus         8 ~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~---~lWk~~~~~~~~~   65 (118)
T d1p22a1           8 RDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDG---MLWKKLIERMVRT   65 (118)
T ss_dssp             CCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHT---THHHHHHHHHHTS
T ss_pred             ccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCH---HHHHHHHHhhccc
Confidence            348888985    99999999999999999999999999999999   9999999887644

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=1.2e-14  Score=117.48  Aligned_cols=52  Identities=23%  Similarity=0.459  Sum_probs=47.4

Q ss_pred             CCccCCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHh-CCCChhHHHHHHHhhC
Q psy2846         110 GSSIHSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIA-DLISSDQWRYFVLTRF  164 (392)
Q Consensus       110 ~~~~~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~-~~~~~~lW~~~~~~~~  164 (392)
                      +|++..||+||+++||+|||+.||++|+||||+|+.++. ++   .+|+.+|.+..
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~---~LWr~l~~~~~   55 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKST---SLWKKLLISEN   55 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCS---HHHHHHHHHTT
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHcC
Confidence            459999999999999999999999999999999999985 56   89999998753

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.4e-14  Score=98.12  Aligned_cols=40  Identities=40%  Similarity=0.766  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHHhHHHHHHHhCCCChhHH
Q psy2846         114 HSLPPEVLITVFSYLDDLSLCSVSRACTRWFTIIADLISSDQW  156 (392)
Q Consensus       114 ~~LP~eil~~IFsyLd~~sL~~~~~VCk~W~~i~~~~~~~~lW  156 (392)
                      +.||.||+.+||+|||+.||++|++|||+|++++.++   .+|
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~---~lW   41 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE---SLW   41 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCG---GGC
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---ccC
Confidence            5799999999999999999999999999999999999   888

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0057  Score=51.40  Aligned_cols=87  Identities=17%  Similarity=0.260  Sum_probs=48.8

Q ss_pred             cccHHHHHHHHHHHHHhhc-------CCCCCceeeeCCCCccEEEEEEecCCCCCCCCcE--EEEEEEeCCCCCCCCCcC
Q psy2846         206 EDNTWRHFRLRKEYNDIKL-------DPPDGIQAQPLDNKRCHWMATIAGPVASPYEGGV--FYLYIRIPFSYPMHPPKV  276 (392)
Q Consensus       206 ~~~s~a~kRL~kEl~~L~k-------~~p~gI~v~p~~~dl~~W~v~I~GP~~TPYegG~--F~~~I~fP~dYP~~PP~V  276 (392)
                      .....-..||..||+.|-+       +....+.+.. +.+=..|.+.--=    .+.--.  |.+++.+|..||..||.|
T Consensus        21 rD~e~W~~RLKEEy~aLI~Yv~nNK~~dndWF~les-n~~GT~W~GkCWy----ihnl~kYeFd~eFdIP~tYP~t~pEi   95 (162)
T d2in1a1          21 RDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKEGTRWFGKCWY----IHDLLKYEFDIEFDIPITYPTTAPEI   95 (162)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEE-CTTSSEEEEEEEE----EETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCeeeceeeE----EEeeeEEEEEEEeccCCCCCCCCcce
Confidence            3445678999999998854       1233344443 2222334332110    112223  455566799999999998


Q ss_pred             ccccc-cccccccCCCceeccC
Q psy2846         277 KFITR-IFHPNVSRHGDLSHAP  297 (392)
Q Consensus       277 ~F~T~-IfHPNV~~~G~VCL~i  297 (392)
                      ..-.- ---.-.|..|+|||++
T Consensus        96 ~lPeLdGKTaKMYRGGkIClt~  117 (162)
T d2in1a1          96 AVPELDGKTAKMYRGGKICLTD  117 (162)
T ss_dssp             BCGGGSSSCSSSCGGGBCCCCT
T ss_pred             eccccCCchhhhhcCceeeccc
Confidence            76210 0012234589999985

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.67  E-value=0.13  Score=40.27  Aligned_cols=66  Identities=17%  Similarity=0.205  Sum_probs=42.2

Q ss_pred             HHHHHHHhhcCCCCCceeeeCCCCccE--EEEEEecCC--CCCCCCcEEEEEEEeCCCCCCCCCcCcccc
Q psy2846         215 LRKEYNDIKLDPPDGIQAQPLDNKRCH--WMATIAGPV--ASPYEGGVFYLYIRIPFSYPMHPPKVKFIT  280 (392)
Q Consensus       215 L~kEl~~L~k~~p~gI~v~p~~~dl~~--W~v~I~GP~--~TPYegG~F~~~I~fP~dYP~~PP~V~F~T  280 (392)
                      +..|+..|+.-=+..+.+...++....  ..+.+....  +..-......+.+.||.+||..+|.+.+..
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~   75 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGNGRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   75 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCTTSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccCCCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeec
Confidence            577899888765666665544444333  444444211  111223568899999999999999987654