Psyllid ID: psy2859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530----
Protein Sequence
MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQPDDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQPDDGKSAQSDNGKLGNAVNGTAGEEKPVTKEDKREEKEDGVKPESKKIEGSSIEKISEQI
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHccHHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHHcccccEEHHHHcccHHHHHcccccHHHccccHHHHHHHccHHHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHccHHHHHHHHHHcccccccccccccHHHHHHHHccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHccHHHHHHHccHHHHHHHHcccccccccccccccccHHHHHHHccccHHHHHHHHccccccHcccccccHHHHHHHccccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHcHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccEEccccHccccccccccccccccEEEEEccHHHHcEHHHHHHHHHHcccccccccccHHccccccccccccccccccccccccHHHHHHHHHHHHcccccEEccccEEcccccccccccccHcEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msipmegneifdfisknDIDNVQKLLSEHKLRvdlydehgmtplqhaaYKGNKQICQLLLDhgadvnsgrhehgysALHFAALSGKDDVCACLLSAgaksyatnsvgrTASQMAAFVVVAVINNYiaksevdyyivprglettpkldpilaeplhtfimQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKqmkagpetneiiqgdkpcdLVELFVRKihrpihgeKYVAMFIRDCvrefpyreqgdkscDLVELFVRKihrpihgeKYVAMFIRDCvrefpyrecMIFKQMVSslarsdptpgfALSVLTSAinghrgfaddttpcvtcgeenatkkcakckttrycdrecqrlhwfihkkecarsgpsaqpddgklgnavngtageekpmvsslarsdptpgfALSVLTSAinghrgfaddttpcvtcgeenatkkcakckttrycdrecqrlhwfihkkecarsgpsaqpddgksaqsdngklgnavngtageekpvtkedkreekedgvkpeskkiegsSIEKISEQI
Flexible Loop (DISEMBL)
MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQmkagpetneiiqgdkPCDLVELFVRKihrpihgekyVAMFIRDCVREFPyreqgdkscDLVELFVRKihrpihgekyVAMFIRDCVREFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADdttpcvtcgeenatkkcakckttrycDRECQRLHWFIHKKecarsgpsaqpddgKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAINGHRGFADdttpcvtcgeenatkkcakckttrycDRECQRLHWFIHKKecarsgpsaqpddgksaqsdngklgnavngtageekpvtkedkreekedgvkpeskkiegssiekiseqi
Low Complexity Region (SEG)
MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENatkkcakckttRYCDRECQRLHWFIHKKECARSGPSAQPDDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENatkkcakckttRYCDRECQRLHWFIHKKECARSGPSAQPDDGKSAQSDNGKLGNAVNGTAGEEKPVTKEDKREEKEDGVKPESKKIEGSSIEKISEQI
Disordered region (IsUnstruct)
*********IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLL************EIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKE*****************************************FALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKE*********************************************************************
Disordered Region (DISOPRED)
*SIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREF*******KSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVS*********GFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKK*********************************************SVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKK**********************************************************************
Disordered Region (DISEMBL)
MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC*********DDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC******************NGKLGNAVNGTA**************************************
Disordered Region (DISPRO)
****MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARS******************************RSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQPDDGK*******************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQPDDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQPDDGKSAQSDNGKLGNAVNGTAGEEKPVTKEDKREEKEDGVKPESKKIEGSSIEKISEQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	534	2.2.26 [Sep-21-2011]
Q0VCS9	442	Ankyrin repeat and MYND d	yes	N/A	0.625	0.755	0.414	5e-72
Q8IV38	441	Ankyrin repeat and MYND d	yes	N/A	0.623	0.755	0.410	9e-72
Q5ZMD2	460	Ankyrin repeat and MYND d	yes	N/A	0.612	0.710	0.405	9e-72
Q3TPE9	440	Ankyrin repeat and MYND d	yes	N/A	0.617	0.75	0.402	1e-71
Q9N3Q8	388	Dauer abnormal formation	yes	N/A	0.623	0.858	0.290	2e-31
Q9H2K2	1166	Tankyrase-2 OS=Homo sapie	no	N/A	0.205	0.094	0.378	1e-09
Q3UES3	1166	Tankyrase-2 OS=Mus muscul	no	N/A	0.205	0.094	0.378	1e-09
Q1LZC5	299	Ankyrin repeat domain-con	no	N/A	0.189	0.337	0.411	1e-09
Q8C8R3	3898	Ankyrin-2 OS=Mus musculus	no	N/A	0.189	0.025	0.372	3e-09
A2VDR2	282	Acyl-CoA-binding domain-c	no	N/A	0.177	0.336	0.364	3e-09

>sp|Q0VCS9|ANKY2_BOVIN Ankyrin repeat and MYND domain-containing protein 2 OS=Bos taurus GN=ANKMY2 PE=2 SV=1

 Score =  272 bits (696), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 157/379 (41%), Positives = 215/379 (56%), Gaps = 45/379 (11%)

Query: 3   IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
           +  E  E+ + I K  +     LL    +RV+  DE+GMTPL HAAYKG   +C+LLL H
Sbjct: 9   LTQEEKELLEVIGKGTVQEAGTLLGSKNVRVNCLDENGMTPLMHAAYKGKLDMCKLLLRH 68

Query: 63  GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----V 118
           GADVN  +HEHGY+AL FAALSG  D+   +L AGA++   NSVGRTA+QMAAFV     
Sbjct: 69  GADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDC 128

Query: 119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL----NLLP 174
           V +INN+  + ++DYY  P+GL+  PKL P LA PLH  I   N+HPV++ +    N L 
Sbjct: 129 VTIINNFFPREKLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLINENPLL 188

Query: 175 SLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMF 234
           +  + L    KV+ L+ EK MK               D+ E+   K+H       Y++  
Sbjct: 189 AEEAALNKCYKVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCI 228

Query: 235 IRDCVREFPYREQGDKSCDLVELFVRKIHR---PIHGEKYVAMFIRDCVREFPYRECMIF 291
            + C+     RE  +K   L++  ++       P++ EK     IR+ +R+FPY E  + 
Sbjct: 229 FQKCINFLKDRE--NKLDTLIKSLLKGRASDGFPVYQEK----IIRESIRKFPYCEATLL 282

Query: 292 KQMVSSLA----RSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTT 347
           +Q+V S+A     SDPT   A SVLT AI G  GF  D   C TCGE+ A+K+C+ CK  
Sbjct: 283 QQLVRSIAPVEIGSDPT---AFSVLTQAITGQVGFV-DVEFCTTCGEKGASKRCSVCKMV 338

Query: 348 RYCDRECQRLHWFIHKKEC 366
            YCD+ CQ+ HWF HKK C
Sbjct: 339 IYCDQTCQKTHWFAHKKIC 357

May be involved in the trafficking of signaling proteins to the cilia.
Bos taurus (taxid: 9913)

>sp|Q8IV38|ANKY2_HUMAN Ankyrin repeat and MYND domain-containing protein 2 OS=Homo sapiens GN=ANKMY2 PE=1 SV=1

 Score =  271 bits (693), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 156/380 (41%), Positives = 216/380 (56%), Gaps = 47/380 (12%)

Query: 3   IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
           +  E  E+ + I K  +     LLS   +RV+  DE+GMTPL HAAYKG   +C+LLL H
Sbjct: 9   LTQEEKELLEVIGKGTVQEAGTLLSSKNVRVNCLDENGMTPLMHAAYKGKLDMCKLLLRH 68

Query: 63  GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----V 118
           GADVN  +HEHGY+AL FAALSG  D+   +L AGA++   NSVGRTA+QMAAFV     
Sbjct: 69  GADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDC 128

Query: 119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL----NLLP 174
           V +INN+  +  +DYY  P+GL+  PKL P LA PLH  I   N+HPV++ +    N L 
Sbjct: 129 VTIINNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLVNENPLL 188

Query: 175 SLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMF 234
           +  + L    +V+ L+ EK MK               D+ E+   K+H       Y++  
Sbjct: 189 TEEAALNKCYRVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCI 228

Query: 235 IRDCVREFPYREQGDKSCD-LVELFVRKIHR---PIHGEKYVAMFIRDCVREFPYRECMI 290
            + C+    + + G+   D L++  ++       P++ EK     IR+ +R+FPY E  +
Sbjct: 229 FQKCIN---FLKDGENKLDTLIKSLLKGRASDGFPVYQEK----IIRESIRKFPYCEATL 281

Query: 291 FKQMVSSLA----RSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKT 346
            +Q+V S+A     SDPT   A SVLT AI G  GF  D   C TCGE+ A+K+C+ CK 
Sbjct: 282 LQQLVRSIAPVEIGSDPT---AFSVLTQAITGQVGFV-DVEFCTTCGEKGASKRCSVCKM 337

Query: 347 TRYCDRECQRLHWFIHKKEC 366
             YCD+ CQ+ HWF HKK C
Sbjct: 338 VIYCDQTCQKTHWFTHKKIC 357

May be involved in the trafficking of signaling proteins to the cilia.

Homo sapiens (taxid: 9606)

>sp|Q5ZMD2|ANKY2_CHICK Ankyrin repeat and MYND domain-containing protein 2 OS=Gallus gallus GN=ANKMY2 PE=2 SV=1

 Score =  271 bits (693), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 154/380 (40%), Positives = 212/380 (55%), Gaps = 53/380 (13%)

Query: 6   EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
           E  ++   I+K +++   +LL    + V+  DEHGMTPL HAAYKG   +C+LLL HGAD
Sbjct: 12  EEKDLLGVIAKGNVEEAGRLLGSKNVHVNCLDEHGMTPLMHAAYKGKVDMCRLLLRHGAD 71

Query: 66  VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAV 121
           VN   HEHGY+AL FA LSG  ++   +L AGA++   NSVGRTA+QMAAFV     V +
Sbjct: 72  VNCNEHEHGYTALMFAGLSGNKEITWMMLEAGAETDVVNSVGRTAAQMAAFVGQHDCVTI 131

Query: 122 INNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL----NLLPSLI 177
           INN+  +  +DYY  P+GL+  PKL   LA PLH  I   N+HPV++ L    N L + +
Sbjct: 132 INNFFPRERLDYYTKPQGLDKEPKLPVKLAGPLHKIITTTNMHPVKIVLLVKENPLLAEV 191

Query: 178 SHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRD 237
             L    +V+ L+ EK MK               D+ E+   K+H       Y++   + 
Sbjct: 192 EALQKCYRVLDLICEKCMKQK-------------DMNEVLAMKMH-------YISCIFQK 231

Query: 238 CVREFPYREQGDKSCDLVELFVRKIHR-------PIHGEKYVAMFIRDCVREFPYRECMI 290
           CV     RE      D ++ F++ + +       P++ EK     IR+ +R+FPY E  +
Sbjct: 232 CVTFLKERE------DKLDGFIKSLLKGRDKDGFPVYQEK----LIRESIRKFPYCEATL 281

Query: 291 FKQMVSSLA----RSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKT 346
            +Q+V S+A     SDPT   A SVLT AI G  GF  D   C TCGE+ A K+C+ CK 
Sbjct: 282 LQQLVRSIAPVELGSDPT---AFSVLTQAITGQVGFV-DAEFCTTCGEKGADKRCSVCKV 337

Query: 347 TRYCDRECQRLHWFIHKKEC 366
             YCD+ CQ+ HWF HKK C
Sbjct: 338 VMYCDQNCQKTHWFTHKKVC 357

May be involved in the trafficking of signaling proteins to the cilia.

Gallus gallus (taxid: 9031)

>sp|Q3TPE9|ANKY2_MOUSE Ankyrin repeat and MYND domain-containing protein 2 OS=Mus musculus GN=Ankmy2 PE=1 SV=1

 Score =  271 bits (693), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 154/383 (40%), Positives = 217/383 (56%), Gaps = 53/383 (13%)

Query: 3   IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
           +  E  E+ + I K  +    +LLS   + V+  DE+GMTPL HAAYKG  ++C+LLL H
Sbjct: 9   LTQEEKELLEVIGKGTVQEAGRLLSSKNVHVNCLDENGMTPLMHAAYKGKLEMCKLLLRH 68

Query: 63  GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----V 118
           GAD +  +HEHGY+AL FAALSG  D+   +L AGA++   NSVGRTA+QMAAFV     
Sbjct: 69  GADASCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDC 128

Query: 119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL----NLLP 174
           VA+INN+  +  +DYY  P+GL+  PKL P LA PLH  I   N+HPV++ +    N L 
Sbjct: 129 VAIINNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLVSENPLL 188

Query: 175 SLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMF 234
           +  + L    +V+ L+ EK MK               D+ E+   K+H       Y++  
Sbjct: 189 ADAAALGKCYRVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCI 228

Query: 235 IRDCVREFPYREQGDKSCDLVELFVRKIHR-------PIHGEKYVAMFIRDCVREFPYRE 287
            + C+    + ++G+   D     +R + +       P++ EK     IR+ +R+FPY E
Sbjct: 229 FQKCIT---FLKEGENKLD---TLIRSLLKGRASDGFPVYQEK----IIRESIRKFPYCE 278

Query: 288 CMIFKQMVSSLA----RSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAK 343
             + +Q+V S+A     SDPT   A SVLT AI G  GF  D   C TCGE+ A+K+C+ 
Sbjct: 279 ATLLQQLVRSIAPVEIGSDPT---AFSVLTQAITGQVGFV-DVEFCTTCGEKGASKRCSV 334

Query: 344 CKTTRYCDRECQRLHWFIHKKEC 366
           CK   YCD+ CQ+ HWF HKK C
Sbjct: 335 CKMVIYCDQTCQKTHWFAHKKMC 357

May be involved in the trafficking of signaling proteins to the cilia.

Mus musculus (taxid: 10090)

>sp|Q9N3Q8|DAF25_CAEEL Dauer abnormal formation protein 25 OS=Caenorhabditis elegans GN=daf-25 PE=1 SV=2

 Score =  137 bits (346), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/372 (29%), Positives = 173/372 (46%), Gaps = 39/372 (10%)

Query: 10  IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
           +F+ I KND +    LL + K +    D  GM+ L  AAY+GN  + +  ++   DVN  
Sbjct: 12  LFEAIDKNDTEAALALL-KTKEQAAQRDPSGMSVLAAAAYRGNLTLVEKAIELKCDVNDK 70

Query: 70  RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINNY 125
                Y+ L FAALSGK DVC  L+ +GA+ Y  N +G+TAS++AAFV     VA+INN+
Sbjct: 71  TDGTLYTPLMFAALSGKQDVCRLLMDSGARMYLVNGIGKTASELAAFVGHHECVAIINNH 130

Query: 126 IAKSEVDYYIVPR------GLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLI 177
           I    ++  + P+      G E  P     LA  +H+      IHPV++       P  +
Sbjct: 131 ITIDVIEDLLRPKVNGKYEGAEEYPDE---LAVFIHSLCGSHEIHPVKIIFRFSKYPDSL 187

Query: 178 SHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRD 237
            +   +  V+  + EKQ++   E+NEI+              K+   +   +  + F+  
Sbjct: 188 KYKKKILYVIDRVFEKQLRC-KESNEIMS------------LKLWLILFSMRETSKFVES 234

Query: 238 CVREFPYREQGDKSCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSS 297
              + P  E   +   L+  +           + + + +R+ V  FPY+  ++   +  +
Sbjct: 235 NKEKSP-EEASLQYAKLISTW----QEGDETRRALDVMLRNAVASFPYKHSLLHDTLQKA 289

Query: 298 LARSD--PTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQ 355
           L +S     P  A   +  A+ G R  A     C  CG   A K+C +CK   YC +ECQ
Sbjct: 290 LQKSQIGERPS-AYEYIVQALFGQR-IAAVCQFCSVCGHPGAKKRCTQCKLA-YCSQECQ 346

Query: 356 RLHWFIHKKECA 367
           +  W IHKK C+
Sbjct: 347 KFDWPIHKKVCS 358

May be involved in the trafficking and dendritic transport of signaling proteins to the cilia.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9H2K2|TNKS2_HUMAN Tankyrase-2 OS=Homo sapiens GN=TNKS2 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 21  NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
           +V + L ++   V   D+ G+ PL +A   G+ ++  LLL HGAD N+ R    Y+ LH 
Sbjct: 72  DVVEYLLQNGANVQARDDGGLIPLHNACSFGHAEVVNLLLRHGADPNA-RDNWNYTPLHE 130

Query: 81  AALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEV 131
           AA+ GK DVC  LL  GA+    N+ GRTA  +A     AV+     K E+
Sbjct: 131 AAIKGKIDVCIVLLQHGAEPTIRNTDGRTALDLADPSAKAVLTGEYKKDEL 181

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q3UES3|TNKS2_MOUSE Tankyrase-2 OS=Mus musculus GN=Tnks2 PE=2 SV=2

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/111 (37%), Positives = 60/111 (54%), Gaps = 1/111 (0%)

Query: 21  NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
           +V + L ++   V   D+ G+ PL +A   G+ ++  LLL HGAD N+ R    Y+ LH 
Sbjct: 72  DVVEYLLQNGANVQARDDGGLIPLHNACSFGHAEVVNLLLQHGADPNA-RDNWNYTPLHE 130

Query: 81  AALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEV 131
           AA+ GK DVC  LL  GA+    N+ GRTA  +A     AV+     K E+
Sbjct: 131 AAIKGKIDVCIVLLQHGAEPTIRNTDGRTALDLADPSAKAVLTGDYKKDEL 181

Poly-ADP-ribosyltransferase involved in various processes such as Wnt signaling pathway, telomere length and vesicle trafficking. Acts as an activator of the Wnt signaling pathway by mediating poly-ADP-ribosylation of AXIN1 and AXIN2, 2 key components of the beta-catenin destruction complex: poly-ADP-ribosylated target proteins are recognized by RNF146, which mediates their ubiquitination and subsequent degradation. Also mediates poly-ADP-ribosylation of BLZF1 and CASC3, followed by recruitment of RNF146 and subsequent ubiquitination. Mediates poly-ADP-ribosylation of TERF1, thereby contributing to the regulation of telomere length. May also regulate vesicle trafficking and modulate the subcellular distribution of SLC2A4/GLUT4-vesicles (By similarity).$.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 2

EC: .

EC: 3

EC: 0

>sp|Q1LZC5|ANR54_BOVIN Ankyrin repeat domain-containing protein 54 OS=Bos taurus GN=ANKRD54 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 56/107 (52%), Gaps = 6/107 (5%)

Query: 10  IFDFISKNDIDNVQKLLSEHKLRVD--LYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
           + D  + ND++ VQ+LL E     D    D+ G T L  A+  GN QI QLLLDHGAD N
Sbjct: 113 LRDSANANDVETVQQLLEEG---TDPCAADDKGRTALHFASCNGNDQIVQLLLDHGADPN 169

Query: 68  SGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
             R   G + LH AA +    V   LL  GA+  A +  GRT   +A
Sbjct: 170 Q-RDGLGNTPLHLAACTNHAPVITTLLRGGARVDALDRAGRTPLHLA 215

Plays an important role in regulating intracellular signaling events associated with erythroid terminal differentiation.

Bos taurus (taxid: 9913)

>sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/102 (37%), Positives = 56/102 (54%), Gaps = 1/102 (0%)

Query: 13  FISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
             ++ D  NV  +L++H    D Y + G TPL  A + GN ++   LL  GA+VN+ + +
Sbjct: 701 LAAQEDKVNVADILTKHGADRDAYTKLGYTPLIVACHYGNVKMVNFLLKQGANVNA-KTK 759

Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           +GY+ LH AA  G   +   LL  GAK  AT + G TA  +A
Sbjct: 760 NGYTPLHQAAQQGHTHIINVLLQHGAKPNATTANGNTALAIA 801

Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate.

Mus musculus (taxid: 10090)

>sp|A2VDR2|ACBD6_BOVIN Acyl-CoA-binding domain-containing protein 6 OS=Bos taurus GN=ACBD6 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 58/96 (60%), Gaps = 1/96 (1%)

Query: 3   IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
           I  E  +IFD+  +N+ID++ K++    + V++ DE G T L  A  +G+K++  +LL +
Sbjct: 155 IREEDKDIFDYCRENNIDHITKVIKTKNMDVNMKDEEGRTLLHWACDRGHKELVTVLLQY 214

Query: 63  GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
            AD+N   +E G +ALH+AA     D+   LL +GA
Sbjct: 215 RADINCQDNE-GQTALHYAAACEFLDIVELLLQSGA 249

Binds long-chain acyl-coenzyme A molecules with a strong preference for unsaturated C18:1-CoA, lower affinity for unsaturated C20:4-CoA, and very weak affinity for saturated C16:0-CoA. Does not bind fatty acids.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
307189954	405	Ankyrin repeat and MYND domain-containin	0.655	0.864	0.490	3e-99
322800676	407	hypothetical protein SINV_05901 [Solenop	0.672	0.882	0.501	3e-99
332028331	407	Ankyrin repeat and MYND domain-containin	0.672	0.882	0.498	4e-99
156552215	411	PREDICTED: ankyrin repeat and MYND domai	0.711	0.924	0.481	4e-99
357617178	392	hypothetical protein KGM_01150 [Danaus p	0.670	0.913	0.493	7e-99
380016914	407	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.685	0.899	0.472	9e-97
350417592	407	PREDICTED: ankyrin repeat and MYND domai	0.685	0.899	0.467	3e-96
340718013	407	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.685	0.899	0.472	4e-96
383860124	407	PREDICTED: ankyrin repeat and MYND domai	0.700	0.918	0.454	2e-95
307213312	406	Ankyrin repeat and MYND domain-containin	0.670	0.881	0.490	4e-93

>gi|307189954|gb|EFN74190.1| Ankyrin repeat and MYND domain-containing protein 2 [Camponotus floridanus]

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 185/377 (49%), Positives = 257/377 (68%), Gaps = 27/377 (7%)

Query: 9   EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           EIF  IS+N++  ++ L +++K+++D  DE+GM+PLQHA YKGNK++ Q+LLD GADVN+
Sbjct: 14  EIFTKISQNEVSELKALFAQNKIKIDFVDENGMSPLQHACYKGNKEVVQMLLDQGADVNA 73

Query: 69  GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINN 124
            +HEH Y+ALHFAALSG  ++C  L+S GA+  ATNSVGRTA+QMAAFV     VA INN
Sbjct: 74  CQHEHAYTALHFAALSGNAELCHLLMSHGARLTATNSVGRTAAQMAAFVGNHNCVATINN 133

Query: 125 YIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLISHLPS 182
           +I K+++DY+I P+GL+T P L P LA+  H FIMQVN++PVRV +NL  LP+L+ +   
Sbjct: 134 FIPKADIDYFIKPQGLQTEPMLPPHLADCFHEFIMQVNVNPVRVCMNLQRLPALLENAAK 193

Query: 183 VRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELF-VRKIHRPIHGEKYVAMFIRDC 238
           ++KV+  +  ++M  G ETNE++        C + E+   +K    +  EK         
Sbjct: 194 IQKVLESMRYREMTRGAETNEVMAFKYHYLSCIVAEVLKCQKRQEAMKAEKS-------- 245

Query: 239 VREFPYREQGDKSCDLVELFVRKIHRPIHGE---KYVAMFIRDCVREFPYRECMIFKQMV 295
                  E  +K  D VEL VR+  +    +   +Y   F+R+ VREFP+RE  IF+QMV
Sbjct: 246 ----GNEESEEKKSDTVELLVRRFLKCSKSDGLPEYQEAFLREAVREFPFRESTIFRQMV 301

Query: 296 SSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQ 355
           ++LA +DP    A+SV+++AING RGF+D+   CVTCGE+ ATKKC+KCK  +YCDRECQ
Sbjct: 302 ATLAGTDPPS--AVSVVSAAINGQRGFSDNAQTCVTCGEDKATKKCSKCKAVQYCDRECQ 359

Query: 356 RLHWFIHKKECARSGPS 372
           RLHWF+HKK CAR  PS
Sbjct: 360 RLHWFMHKKACARLDPS 376

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800676|gb|EFZ21610.1| hypothetical protein SINV_05901 [Solenopsis invicta]

 Score =  369 bits (946), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 193/385 (50%), Positives = 260/385 (67%), Gaps = 26/385 (6%)

Query: 9   EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           EIFD ISKN++  ++ LL++ K+++D  DE+GM+PLQHA YKGNK+I QLLLD GADVN+
Sbjct: 14  EIFDKISKNEVCELKTLLAQKKVKMDFVDENGMSPLQHACYKGNKEIVQLLLDQGADVNA 73

Query: 69  GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINN 124
            +HEH Y+ALHFAALSG  ++C  L+S GA+  ATNSVGRTA+QMAAFV     VA INN
Sbjct: 74  CQHEHAYTALHFAALSGNAELCHLLMSHGARLTATNSVGRTAAQMAAFVGNHNCVATINN 133

Query: 125 YIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLISHLPS 182
           +I K+++DYYI P+GL+  P L P LA+ LH FIM VN++PVRV +NL  LP+L+ +   
Sbjct: 134 FIPKADIDYYIKPQGLQAEPMLPPHLADYLHKFIMHVNVNPVRVCMNLQRLPALLENAAK 193

Query: 183 VRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELF-VRKIHRPIHGEKYVAMFIRDC 238
           V+KV+  +  K+M  G E NE++        C + E+   +K    +  EK         
Sbjct: 194 VQKVLESMRYKEMTRGAEINEVMAFKYHYLSCVVAEVLKCQKRQEAMKAEK--------- 244

Query: 239 VREFPYREQGDKSCDLVELFVRKIHRPIHGE---KYVAMFIRDCVREFPYRECMIFKQMV 295
             E    E  +K  D VEL +R+  +    +   +Y   F+R+ VREFP+RE  IF+QMV
Sbjct: 245 -GEKGNEESEEKKSDTVELLIRRFLKCNKNDSLPEYQEAFLRESVREFPFRESTIFRQMV 303

Query: 296 SSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQ 355
           ++LA +DP    A+SV+++AING RGF D+   CVTC E+ ATKKC+KCK  +YCDRECQ
Sbjct: 304 ATLASTDPPS--AVSVISAAINGQRGFYDNAQTCVTCSEDKATKKCSKCKAVQYCDRECQ 361

Query: 356 RLHWFIHKKECARSGPSAQPDDGKL 380
           RLHWF+HKK CAR G S   ++GKL
Sbjct: 362 RLHWFMHKKACARLGQSP-ANNGKL 385

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028331|gb|EGI68378.1| Ankyrin repeat and MYND domain-containing protein 2 [Acromyrmex echinatior]

 Score =  368 bits (945), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 192/385 (49%), Positives = 260/385 (67%), Gaps = 26/385 (6%)

Query: 9   EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           EIF+ ISKN++  ++ LL++ K+++D  DE+GM+PLQHA YKGNK+I QLLLD GADVN+
Sbjct: 14  EIFERISKNEVCELKTLLAQRKIKMDFVDENGMSPLQHACYKGNKEIVQLLLDQGADVNA 73

Query: 69  GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINN 124
            +HEH Y+ALHFAALSG  ++C  L+S GA+  ATNSVGRTA+QMAAFV     VA INN
Sbjct: 74  CQHEHAYTALHFAALSGNAELCHLLMSHGARLTATNSVGRTAAQMAAFVGNHNCVATINN 133

Query: 125 YIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLISHLPS 182
           +I K+++DYYI P+GL+T P L P LA+  H FIM VN++PVRV +NL  LP+L+ +   
Sbjct: 134 FIPKADIDYYIKPQGLQTEPMLPPHLADYFHKFIMHVNVNPVRVCMNLQRLPALLENSAK 193

Query: 183 VRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELF-VRKIHRPIHGEKYVAMFIRDC 238
           ++KV+  +  K+M  G E NE++        C + E+   +K    +  EK         
Sbjct: 194 IQKVLESMRYKEMTRGAEINEVMAFKYHYLSCVVAEVLKCQKRQEAMKAEK--------- 244

Query: 239 VREFPYREQGDKSCDLVELFVRKIHRPIHGE---KYVAMFIRDCVREFPYRECMIFKQMV 295
             E    E  +K  D VEL +R+  +    +   +Y   F+R+ VREFP+RE  IF+QMV
Sbjct: 245 -GEKGNEESEEKKSDTVELLIRRFLKCSKNDSLPEYQEAFLRESVREFPFRESTIFRQMV 303

Query: 296 SSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQ 355
           ++LA +DP    A+SV+++AING RGF D    CVTCGE+ ATKKC+KCK  +YCDRECQ
Sbjct: 304 ATLASTDPPS--AVSVISAAINGQRGFFDGAQTCVTCGEDKATKKCSKCKAVQYCDRECQ 361

Query: 356 RLHWFIHKKECARSGPSAQPDDGKL 380
           RLHWF+HKK CAR G S   ++GKL
Sbjct: 362 RLHWFMHKKACARLGQSP-ANNGKL 385

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156552215|ref|XP_001606321.1| PREDICTED: ankyrin repeat and MYND domain-containing protein 2-like [Nasonia vitripennis]

 Score =  368 bits (944), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 194/403 (48%), Positives = 259/403 (64%), Gaps = 23/403 (5%)

Query: 2   SIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD 61
           S+P    EIF+ IS N  D ++ LL+ HK+++D  DE+GM+PLQHA YKGNK+I Q+LLD
Sbjct: 6   SLPNLQKEIFEKISNNKTDELKALLAAHKIKIDFIDENGMSPLQHACYKGNKEIVQMLLD 65

Query: 62  HGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV---- 117
           HGAD N  +HEH Y+ALHFAALSG  D+C  L+S GAK  ATNSVGRTA+QMAAFV    
Sbjct: 66  HGADPNQCKHEHQYTALHFAALSGNADLCQLLMSYGAKMSATNSVGRTAAQMAAFVGNHN 125

Query: 118 VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPS 175
            VA INN+I K+++DYYI P+GL+T P L P LA+  H+FI QVN+HPVRV +NL   P 
Sbjct: 126 CVATINNFIPKADIDYYIKPQGLQTEPMLQPHLADSFHSFITQVNVHPVRVIMNLQKFPG 185

Query: 176 LISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELFVRKIHRPIHGEKYVA 232
           L+ +LP ++KV+  + +++M    E NE++        C + E  V K  +     K   
Sbjct: 186 LLDNLPMIQKVLEAMRQREMTRA-EANEVMAFKYHYLSCVVAE--VIKCQKRQEAMKADK 242

Query: 233 MFIRDCVREFPYREQGDKSCDLVELFVRKIH--RPIHGEKYVAMFIRDCVREFPYRECMI 290
           +       E    +  +K  D++EL  +K    +     +Y  +F+R+ VREF YRE  I
Sbjct: 243 IDKEKGPDEKVEEKSDEKRSDVIELLAKKFLKCKSDGTLEYQELFLRETVREFHYRESAI 302

Query: 291 FKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYC 350
           F+QMV++LA SDP    A+SV+ +AING R F D+   CVTCGEE ATKKC+KCK  +YC
Sbjct: 303 FRQMVATLASSDPPS--AISVIAAAINGQRAFTDNAQDCVTCGEEKATKKCSKCKQVQYC 360

Query: 351 DRECQRLHWFIHKKECAR-------SGPSAQPDDGKLGNAVNG 386
           DRECQRLHWFIHKK C+R       +     P+  ++ NAV  
Sbjct: 361 DRECQRLHWFIHKKTCSRLIQLNTSNAKVPDPNSEQISNAVTS 403

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357617178|gb|EHJ70627.1| hypothetical protein KGM_01150 [Danaus plexippus]

 Score =  367 bits (943), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 196/397 (49%), Positives = 255/397 (64%), Gaps = 39/397 (9%)

Query: 10  IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
           IF  I++ D+   + +L++HK  VD +DE+GMT LQHAAYKGNK + QLLLD GADVNSG
Sbjct: 15  IFTAIAQGDLPEFKNILAQHKGSVDFFDENGMTALQHAAYKGNKDMVQLLLDRGADVNSG 74

Query: 70  RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINNY 125
           +HE+ Y+ALHF ALSG  DVC  LL AGAK  ATNSVGR+ASQMAAFV     VA INNY
Sbjct: 75  KHEYNYTALHFGALSGNSDVCKLLLDAGAKPTATNSVGRSASQMAAFVGNHHTVATINNY 134

Query: 126 IAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLISHLPSV 183
           +  SE+ Y+ V +G +T P L P L E LH  ++ VNIHPVR+ALNL  + +L+ +   V
Sbjct: 135 VPASEISYFSVVQGQQTEPHLPPFLVESLHKLVLGVNIHPVRLALNLQHMSALLENAEKV 194

Query: 184 RKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFP 243
            KV+ +L +K+M  G +TNE++           ++  I R I+        IRD  ++ P
Sbjct: 195 SKVLEMLCKKEMTRGSDTNEVMA------FKYHYLAYILREINN-------IRD--KQKP 239

Query: 244 YREQGDKSCDLVELFVRKIHRPIHGEKYVAM-----FIRDCVREFPYRECMIFKQMVSSL 298
              + DK  D++E+F +K+ +P  G+  V++     F++DCVREFPYREC  F QMV+SL
Sbjct: 240 VESKEDKKHDVIEIFSKKLLKP--GKDGVSLDLMDSFLKDCVREFPYRECTTFHQMVTSL 297

Query: 299 ARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLH 358
              DP P  AL+V+   ING RGF D    C TCGEE   KKC+KCKT +YCDRECQRLH
Sbjct: 298 TSKDPPP--ALTVINCTINGQRGFVDAIPYCSTCGEEKPAKKCSKCKTVQYCDRECQRLH 355

Query: 359 WFIHKKECAR-------SGPSAQPDD--GKLGNAVNG 386
           WF+HKK C R       S P+  P +   +L N V G
Sbjct: 356 WFVHKKACNRESSVPVNSKPNIDPSEITAELQNLVAG 392

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016914|ref|XP_003692413.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat and MYND domain-containing protein 2-like [Apis florea]

 Score =  360 bits (924), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 188/398 (47%), Positives = 259/398 (65%), Gaps = 32/398 (8%)

Query: 9   EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           +IF  IS N++  ++ LL+ +K+++D  DE+GM+PLQHA YKGNK+I Q+LLD GADVN+
Sbjct: 14  QIFTKISNNEVSELKVLLTANKIKIDFVDENGMSPLQHACYKGNKEIVQMLLDQGADVNA 73

Query: 69  GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINN 124
            +HEH Y+ALHFAALSG  ++C  L+S GA+  ATNSVGRT +QMAAFV     VA INN
Sbjct: 74  CQHEHAYTALHFAALSGNAELCHLLMSYGARLTATNSVGRTPAQMAAFVGNHNCVATINN 133

Query: 125 YIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLISHLPS 182
           +I K+++DYY+ P+GL+T   L P LA+  H FI+Q+N+HPVRVA+NL   P L+ +   
Sbjct: 134 FIPKADIDYYVKPQGLQTESMLPPHLADSFHKFIIQINVHPVRVAMNLQRYPGLLENATK 193

Query: 183 VRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELF-VRKIHRPIHGEKYVAMFIRDC 238
           V+KV+  +  K+M  G ETNE++        C + E+   +K    +  EK       D 
Sbjct: 194 VQKVLESMHHKEMTKGAETNEVMAFKYHYLSCVVAEVIKFQKRQEAMKAEKI------DK 247

Query: 239 VREFPYREQGDKSCDLVELFVRKIHRPIHGE---KYVAMFIRDCVREFPYRECMIFKQMV 295
             E    E   K  D +E  +RK  +    +   +Y   F+R+ VREFPYRE  IF+QMV
Sbjct: 248 TNE----EGEXKKSDTIEGLIRKFLKCSKSDGIPEYQEAFLRESVREFPYRESTIFRQMV 303

Query: 296 SSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQ 355
           ++LA SDP    A+SV+++AI+G R F D+TT C+TCGE+ A KKC+KCK  +YCDRECQ
Sbjct: 304 ATLAASDPPS--AVSVVSAAIDGQRAFLDNTTLCITCGEDKANKKCSKCKAVQYCDRECQ 361

Query: 356 RLHWFIHKKECARSGPSAQP-------DDGKLGNAVNG 386
           RLHWF+HKK C R G +  P       D  ++ NAV+ 
Sbjct: 362 RLHWFMHKKACTRLGQNITPNAKISDADKEQISNAVSS 399

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417592|ref|XP_003491497.1| PREDICTED: ankyrin repeat and MYND domain-containing protein 2-like [Bombus impatiens]

 Score =  358 bits (920), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 186/398 (46%), Positives = 256/398 (64%), Gaps = 32/398 (8%)

Query: 9   EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           +IF  IS N++  ++ LL+ +K+++D  DE+GM+PLQHA YKGNK+I Q+LLD GADVN+
Sbjct: 14  QIFTRISNNEVSELKTLLAANKIKMDFVDENGMSPLQHACYKGNKEIVQMLLDQGADVNA 73

Query: 69  GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINN 124
            +HEH Y+ALHFAALSG  ++C  L+S GA+  ATNSVGRT +QMAAFV     VA INN
Sbjct: 74  CQHEHAYTALHFAALSGNAELCHLLMSYGARLTATNSVGRTPAQMAAFVGNHNCVATINN 133

Query: 125 YIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLISHLPS 182
           +I K+++DYY+ P+GL+T   L P LA+  H FIMQ+N+HPVRVA+N+   P L+ +   
Sbjct: 134 FIPKADIDYYVKPQGLQTESMLPPHLADSFHKFIMQINVHPVRVAMNIQRYPGLLENAAK 193

Query: 183 VRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELF-VRKIHRPIHGEKYVAMFIRDC 238
           V+KV+  +  K+M  G ETNE++        C + E+   +K    +  EK         
Sbjct: 194 VQKVLESMHHKEMTRGAETNEVMAFKYHYLSCIVAEVIKFQKRQEAMRAEK--------- 244

Query: 239 VREFPYREQGDKSCDLVELFVRKIHRPIHGE---KYVAMFIRDCVREFPYRECMIFKQMV 295
             E    E  +K  D VE  +RK  +    +   +Y   F+R+ VREFPYRE  IF+QMV
Sbjct: 245 -TEKTNEEGEEKKSDTVEGLIRKFLKCSKSDGIPEYQEAFLRESVREFPYRESTIFRQMV 303

Query: 296 SSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQ 355
           ++LA SDP    A SV+++AI+G R F D+   C+TCGE+ A KKC+KCK  +YCDRECQ
Sbjct: 304 ATLAASDPPS--AASVVSAAIDGQRAFLDNAQVCITCGEDKANKKCSKCKAVQYCDRECQ 361

Query: 356 RLHWFIHKKECARSGPSAQP-------DDGKLGNAVNG 386
           RLHWF+HKK C R G +  P       D  ++ NAV+ 
Sbjct: 362 RLHWFMHKKACTRLGQNITPSTKISDADKEQISNAVSS 399

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340718013|ref|XP_003397467.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat and MYND domain-containing protein 2-like [Bombus terrestris]

 Score =  358 bits (919), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 188/398 (47%), Positives = 259/398 (65%), Gaps = 32/398 (8%)

Query: 9   EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           +IF  IS N++  ++ LL+ +K+++D  DE+GM+PLQHA YKGNK+I Q+LLD GADVN+
Sbjct: 14  QIFTRISNNEVSELKTLLAANKIKMDFVDENGMSPLQHACYKGNKEIVQMLLDQGADVNA 73

Query: 69  GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINN 124
            +HEH Y+ALHFAALSG  ++C  L+S GA+  ATNSVGRT +QMAAFV     VA INN
Sbjct: 74  CQHEHAYTALHFAALSGNAELCHLLMSYGARLTATNSVGRTPAQMAAFVGNHNCVATINN 133

Query: 125 YIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLISHLPS 182
           +I K+++DYY+ P+GL+T   L P LA+  H FIMQ+N+HPVRVA+NL   P L+ +   
Sbjct: 134 FIPKADIDYYVKPQGLQTESMLPPHLADSFHKFIMQINVHPVRVAMNLQRYPGLLENAAK 193

Query: 183 VRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELF-VRKIHRPIHGEKYVAMFIRDC 238
           V+KV+  +  K+M  G ETNE++        C + E+   +K    +  EK       D 
Sbjct: 194 VQKVLESMHHKEMTKGAETNEVMAFKYHYLSCIVAEVIKFQKRQEAMKAEK------TDK 247

Query: 239 VREFPYREQGDKSCDLVELFVRKIHRPIHGE---KYVAMFIRDCVREFPYRECMIFKQMV 295
             E    E  +K  D +E  +RK  +    +   +Y   F+R+ VREFPYRE  IF+QMV
Sbjct: 248 TNE----EGEEKKSDTIEGLIRKFLKCSKSDGIPEYQEAFLRESVREFPYRESTIFRQMV 303

Query: 296 SSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQ 355
           ++LA SDP    A SV+++AI+G R F D+   C+TCGE+ A +KC+KCK  +YCDRECQ
Sbjct: 304 ATLAASDPPS--AASVVSAAIDGQRAFLDNAQVCITCGEDKAXQKCSKCKAVQYCDRECQ 361

Query: 356 RLHWFIHKKECARSG----PSAQPDDG---KLGNAVNG 386
           RLHWF+HKK C R G    PSA+  D    ++ NAV+ 
Sbjct: 362 RLHWFMHKKACTRLGQNITPSAKISDADKEQISNAVSS 399

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383860124|ref|XP_003705541.1| PREDICTED: ankyrin repeat and MYND domain-containing protein 2-like [Megachile rotundata]

 Score =  355 bits (912), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 187/411 (45%), Positives = 262/411 (63%), Gaps = 37/411 (9%)

Query: 1   MSIPMEG-----NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQI 55
           M++ MEG      +IF  IS N++  ++ LL+ +K+++D  DE+GM+PLQHA YKGNK+I
Sbjct: 1   MALAMEGLTDVQKQIFTKISNNEVAELKTLLAANKIKMDFVDENGMSPLQHACYKGNKEI 60

Query: 56  CQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            Q+LLD GADVN+ +HE+ Y+ALH AALSG  ++C  L+S GA+  A N+VGRT +QMAA
Sbjct: 61  VQMLLDQGADVNACQHENAYTALHLAALSGNAELCHLLMSHGARLTAKNNVGRTPAQMAA 120

Query: 116 FV----VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALN 171
           FV     VA INN+I K+++DYY+ P+GL+T   L P LA+  H FIMQVN+HPVRVALN
Sbjct: 121 FVGNHNCVAAINNFIPKADIDYYLKPQGLQTESMLPPHLADSFHKFIMQVNVHPVRVALN 180

Query: 172 L--LPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELF-VRKIHRPI 225
           L   P L+ +   V+KV+  +  K+M  G ETNE++        C + E+   +K    +
Sbjct: 181 LQRCPGLLENAVKVQKVLESMRHKEMTRGAETNEVMAFKYHYLSCVVAEIIKFQKRQEAM 240

Query: 226 HGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIHGE---KYVAMFIRDCVRE 282
             EK           E    E  ++  D +E  +R+  +    +   +Y   F+R+ VRE
Sbjct: 241 KAEK----------TEKTNEEGEERKSDTIEGLIRRFLKCSKNDGTPEYQEAFLRETVRE 290

Query: 283 FPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCA 342
           FPYRE  IF+QMV++LA +DP    A+SV+++AING R F+D+   C+TCGE+ A KKC+
Sbjct: 291 FPYRESAIFRQMVATLAATDPPS--AVSVVSAAINGQRAFSDNAQICITCGEDKANKKCS 348

Query: 343 KCKTTRYCDRECQRLHWFIHKKECARSGPSAQP-------DDGKLGNAVNG 386
           KCK  +YCDRECQRLHWF+HKK C R G S  P       D  ++ NAV+ 
Sbjct: 349 KCKIVQYCDRECQRLHWFMHKKACTRLGQSITPNAEISDVDKEQISNAVSS 399

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213312|gb|EFN88764.1| Ankyrin repeat and MYND domain-containing protein 2 [Harpegnathos saltator]

 Score =  348 bits (893), Expect = 4e-93,   Method: Compositional matrix adjust.
 Identities = 188/383 (49%), Positives = 255/383 (66%), Gaps = 25/383 (6%)

Query: 9   EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           +IF  ISKN++  ++ LL+ +K+++D  DE+GM+PLQHA YKGN +I Q+LLD GADVN+
Sbjct: 14  DIFTKISKNEVCELKTLLALNKVKMDFVDENGMSPLQHACYKGNVEIVQMLLDQGADVNA 73

Query: 69  GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINN 124
            +HEH Y+ALHFAALSG  D+C  L+S GA+  A NSVGRTA+QMAAFV     VA INN
Sbjct: 74  CQHEHAYTALHFAALSGNADLCHLLMSHGARLTAMNSVGRTAAQMAAFVGNHNCVATINN 133

Query: 125 YIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL--LPSLISHLPS 182
           +I K+++D+YI P+GL   P L   LA+  H FIMQVN++PVRV +NL   P+L+ +   
Sbjct: 134 FIPKADIDFYIKPQGLLMEPMLPSHLADYFHKFIMQVNVNPVRVTINLQKFPALLENATK 193

Query: 183 VRKVVSLLSEKQMKAGPETNEIIQGDK---PCDLVELFVRKIHRPIHGEKYVAMFIRDCV 239
           V+KV+  +  ++M  G ETNE++        C +VE  V K  R     K          
Sbjct: 194 VQKVLESMRYREMTRGAETNEVMAFKYHYLSCVVVE--VLKCQRRQEAMKAEK------- 244

Query: 240 REFPYREQGDKSCDLVELFVRKIHRPIHGE---KYVAMFIRDCVREFPYRECMIFKQMVS 296
            E    E  +K  D VEL +R+  +    +   +Y   F+R+ VREFP+RE  IF+QMV+
Sbjct: 245 NEKSNEESEEKKSDTVELLIRRFLKCSKNDGLPEYQEAFLRESVREFPFRESTIFRQMVA 304

Query: 297 SLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQR 356
           +LA  DP    A+SV+++AING RGF+D+T  CVTCGE+ A KKC+KCK  +YCDRECQR
Sbjct: 305 TLASRDPPS--AVSVISAAINGQRGFSDNTQICVTCGEDKAIKKCSKCKAVQYCDRECQR 362

Query: 357 LHWFIHKKECARSGPSAQPDDGK 379
           LHWF+HKK CAR G S+  ++GK
Sbjct: 363 LHWFMHKKACARLGQSS--NNGK 383

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	534
FB|FBgn0036096	407	CG8003 [Drosophila melanogaste	0.638	0.837	0.416	1.3e-66
UNIPROTKB|Q5ZMD2	460	ANKMY2 "Ankyrin repeat and MYN	0.619	0.719	0.401	2e-63
RGD|1306017	440	Ankmy2 "ankyrin repeat and MYN	0.702	0.852	0.375	2.3e-62
ZFIN|ZDB-GENE-030131-6321	421	ankmy2a "ankyrin repeat and MY	0.629	0.798	0.397	3.8e-62
UNIPROTKB|E2QXS6	441	ANKMY2 "Uncharacterized protei	0.621	0.752	0.405	7.9e-62
UNIPROTKB|Q8IV38	441	ANKMY2 "Ankyrin repeat and MYN	0.627	0.759	0.402	7.9e-62
UNIPROTKB|Q0VCS9	442	ANKMY2 "Ankyrin repeat and MYN	0.629	0.760	0.405	1e-61
UNIPROTKB|I3L949	441	ANKMY2 "Uncharacterized protei	0.705	0.854	0.374	1.3e-61
UNIPROTKB|F1NM13	460	ANKMY2 "Ankyrin repeat and MYN	0.619	0.719	0.401	2.1e-61
MGI|MGI:2144755	440	Ankmy2 "ankyrin repeat and MYN	0.629	0.763	0.395	3.4e-61

FB|FBgn0036096 CG8003 [Drosophila melanogaster (taxid:7227)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 156/375 (41%), Positives = 217/375 (57%)

Query:     9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
             ++ D ++KND    ++LLS  +  V+  D+ GM+ L HA++KGN++  QLLLD GAD+N 
Sbjct:    17 QLLDHLAKNDTSGFKQLLSGVR-NVNFVDDTGMSCLAHASFKGNREAVQLLLDMGADINL 75

Query:    69 GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAVINN 124
              +H   Y+ LHFAALSG   VC  LL AG K  + NSV RTA+QMAAFV     V  INN
Sbjct:    76 NQHGADYTPLHFAALSGNTHVCRLLLDAGIKPGSINSVNRTAAQMAAFVGNHACVETINN 135

Query:   125 YIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLP-SLISHLPSV 183
             Y+ +S ++YY    G +T P + P L +  H F+ ++N+HPVR+ALN+    L+  L S+
Sbjct:   136 YVTQSSLEYYTQVHGQQTEPHIPPSLLKSFHAFVTEINLHPVRIALNVQSLGLLRILSSL 195

Query:   184 RKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRDCVREFP 243
             RK ++L+ EK+M+            K  DL EL   K H   +    +A  IR C  +F 
Sbjct:   196 RKTLALMCEKEMQ------------KSHDLNELLAFKFH---YQGWILAELIR-CEEQFK 239

Query:   244 YR-------EQGDKSC-DLVELFVRKIHRPIH-GE-KYVAMFIRDCVREFPYRECMIFKQ 293
              +       E GD +  D +E+FV+++ +    G+  YV   +R+C REFP REC IF+Q
Sbjct:   240 AQHKEKSGEEAGDANKNDFIEMFVKRVLKENKLGQLDYVEYTLRECAREFPVRECTIFRQ 299

Query:   294 MVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXRYCDRE 353
             + +     D  P  AL+VL +AING R   D+   C TCG E            +YCDRE
Sbjct:   300 IATQFGAKDAPP--ALTVLRNAINGMRWITDEGNYCSTCGAEKPDKKCSKCKAVQYCDRE 357

Query:   354 CQRLHWFIHKKECAR 368
             CQRLHWF+HKK CAR
Sbjct:   358 CQRLHWFMHKKNCAR 372

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q5ZMD2 ANKMY2 "Ankyrin repeat and MYND domain-containing protein 2" [Gallus gallus (taxid:9031)]

 Score = 628 (226.1 bits), Expect = 2.0e-63, Sum P(2) = 2.0e-63
 Identities = 151/376 (40%), Positives = 205/376 (54%)

Query:     6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
             E  ++   I+K +++   +LL    + V+  DEHGMTPL HAAYKG   +C+LLL HGAD
Sbjct:    12 EEKDLLGVIAKGNVEEAGRLLGSKNVHVNCLDEHGMTPLMHAAYKGKVDMCRLLLRHGAD 71

Query:    66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAV 121
             VN   HEHGY+AL FA LSG  ++   +L AGA++   NSVGRTA+QMAAFV     V +
Sbjct:    72 VNCNEHEHGYTALMFAGLSGNKEITWMMLEAGAETDVVNSVGRTAAQMAAFVGQHDCVTI 131

Query:   122 INNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL----NLLPSLI 177
             INN+  +  +DYY  P+GL+  PKL   LA PLH  I   N+HPV++ L    N L + +
Sbjct:   132 INNFFPRERLDYYTKPQGLDKEPKLPVKLAGPLHKIITTTNMHPVKIVLLVKENPLLAEV 191

Query:   178 SHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRD 237
               L    +V+ L+ EK MK            K  D+ E+   K+H       Y++   + 
Sbjct:   192 EALQKCYRVLDLICEKCMK-----------QK--DMNEVLAMKMH-------YISCIFQK 231

Query:   238 CVREFPYREQGDKSCDLVELFVR---KIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQM 294
             CV     RE  DK    ++  ++   K   P++ EK     IR+ +R+FPY E  + +Q+
Sbjct:   232 CVTFLKERE--DKLDGFIKSLLKGRDKDGFPVYQEK----LIRESIRKFPYCEATLLQQL 285

Query:   295 VSSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXRYC 350
             V S+A     SDPT   A SVLT AI G  GF D    C TCGE+             YC
Sbjct:   286 VRSIAPVELGSDPT---AFSVLTQAITGQVGFVDAEF-CTTCGEKGADKRCSVCKVVMYC 341

Query:   351 DRECQRLHWFIHKKEC 366
             D+ CQ+ HWF HKK C
Sbjct:   342 DQNCQKTHWFTHKKVC 357

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005929 "cilium" evidence=IEA

RGD|1306017 Ankmy2 "ankyrin repeat and MYND domain containing 2" [Rattus norvegicus (taxid:10116)]

 Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
 Identities = 162/431 (37%), Positives = 225/431 (52%)

Query:     3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
             +  E  E+ + I K  +     LLS   + V+  DE+GMTPL HAAYKG  ++C+LLL H
Sbjct:     9 LTQEEKELLEVIGKGTVREAGTLLSSKNVHVNCLDENGMTPLMHAAYKGKLEMCKLLLRH 68

Query:    63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----V 118
             GADVN  +H HGY+AL FAALSG  D+   +L AGA++   NSVGRTASQMAAFV     
Sbjct:    69 GADVNCHQHVHGYTALMFAALSGNKDITWAMLEAGAETDVVNSVGRTASQMAAFVGQYDC 128

Query:   119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL----NLLP 174
             VA+INN+  +  +DYY  P+GL+  PKL P LA PLH  I   N+HPV++ +    N L 
Sbjct:   129 VAIINNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLVSENPLL 188

Query:   175 SLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMF 234
             +  + L    KV+ L+ EK MK               D+ E+   K+H       Y++  
Sbjct:   189 ADAAALGKCYKVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCI 228

Query:   235 IRDCVREFPYREQGDKSCD-LVELFVRKIHRPIHG-EKYVAMFIRDCVREFPYRECMIFK 292
              + C+    + ++G+   D L++  ++   R   G   Y    IR+ +R+FPY E  + +
Sbjct:   229 FQKCIT---FLKEGENKLDALIKSLLKG--RASDGFPVYQEKIIRESIRKFPYCEATLLQ 283

Query:   293 QMVSSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXR 348
             Q+V S+A     SDPT   A SVLT AI G  GF D    C TCGE+             
Sbjct:   284 QLVRSIAPVEIGSDPT---AFSVLTQAITGQVGFVD-VEFCTTCGEKGASKRCSVCKMVI 339

Query:   349 YCDRECQRLHWFIHKKECAR------------SGPSAQPDDGKLGNAVNGTAGEEKPMVS 396
             YCD+ CQ+ HWF HKK C              +    Q +   L +A +    E++P   
Sbjct:   340 YCDQICQKTHWFAHKKMCKSLKDVYEKQQTEAAKQKRQEEKNSLIDANSNHVNEDEPEAE 399

Query:   397 -SLARSDPTPG 406
               ++  DPTPG
Sbjct:   400 VGISHEDPTPG 410

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-030131-6321 ankmy2a "ankyrin repeat and MYND domain containing 2a" [Danio rerio (taxid:7955)]

 Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
 Identities = 154/387 (39%), Positives = 218/387 (56%)

Query:     1 MSIPMEGN------EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQ 54
             MS P +G+      E+   I+  ++    +LL    ++V+  DE+GMTPL HAAYKG   
Sbjct:     1 MSAPKKGDLTDTEKELLQVIAAGNVQEASRLLGSKDVKVNCLDEYGMTPLMHAAYKGKAD 60

Query:    55 ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
             +C+LLL HGADVN   HEHGY+AL FA LSGK ++   +L AGA++ A NSVGRTA+QMA
Sbjct:    61 MCKLLLQHGADVNCNEHEHGYTALMFAGLSGKTEITWMMLDAGAETDAVNSVGRTAAQMA 120

Query:   115 AFV----VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL 170
             AFV     V VINN+ +++ +DYY  P+GLE  PKL   L+ PLH  IM  N++PV++ +
Sbjct:   121 AFVGQHDCVTVINNFFSRARLDYYTKPQGLEKEPKLPSKLSGPLHKIIMSTNLNPVKIVM 180

Query:   171 NLL--PSL--ISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIH 226
              +   P L  +  L   RKV+ L+ EK +K               D+ E+   K+H    
Sbjct:   181 MVKENPLLMDVEALEKCRKVLELICEKCIKQQ-------------DMNEVLAMKMH---- 223

Query:   227 GEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHR---PIHGEKYVAMFIRDCVREF 283
                Y++  ++ C   F  +++ DK   L++  ++       P+  EK    FIR+C+R+F
Sbjct:   224 ---YLSCVLQKC-GSF-LKDRQDKLESLIKSLLKGRDSDGFPVFQEK----FIRECIRKF 274

Query:   284 PYRECMIFKQMVSSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXX 339
             PY +  + +Q+V S+A     SDPT   A+SVLT AI G  GF D    C TCGE+    
Sbjct:   275 PYCDATLLQQLVRSIAPVEIGSDPT---AMSVLTQAITGQVGFMDADF-CTTCGEKGAEK 330

Query:   340 XXXXXXXXRYCDRECQRLHWFIHKKEC 366
                      YC + CQ+LHWF HKK C
Sbjct:   331 RCSICKMVIYCGQACQKLHWFSHKKVC 357

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2QXS6 ANKMY2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 152/375 (40%), Positives = 205/375 (54%)

Query:     6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
             E  E+ + I+K  +     LL+   +RV+  DE+GMTPL HAAYKG   +C+LLL HGAD
Sbjct:    12 EEKELLEVIAKGTVQEAGTLLASKNVRVNCLDENGMTPLMHAAYKGKLDMCKLLLRHGAD 71

Query:    66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAV 121
             VN  +HEHGY+AL FAALSG  D+   +L AGA++   NSVGRTA+QMAAFV     V +
Sbjct:    72 VNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDCVTI 131

Query:   122 INNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL--NLLPSLISH 179
             INN+  +  +DYY  P+GL+  PKL P LA PLH  I   N+HPV++ +  N  P L   
Sbjct:   132 INNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLINENPLLAEE 191

Query:   180 --LPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRD 237
               L    KV+ L+ EK MK               D+ E+   K+H       Y++   + 
Sbjct:   192 TALNKCYKVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCIFQK 231

Query:   238 CVREFPYREQGDKSCD-LVELFVRKIHRPIHG-EKYVAMFIRDCVREFPYRECMIFKQMV 295
             C+    + + G+   D L++  ++   R   G   Y    IR+ +R+FPY E  + +Q+V
Sbjct:   232 CIN---FLKDGENKLDTLIKSLLKG--RASDGFPVYQEKIIRESIRKFPYCEATLLQQLV 286

Query:   296 SSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXRYCD 351
              S+A     SDPT   A SVLT AI G  GF D    C TCGE+             YCD
Sbjct:   287 RSIAPVEIGSDPT---AFSVLTQAITGQVGFVD-VEFCTTCGEKGASKRCSVCKMVIYCD 342

Query:   352 RECQRLHWFIHKKEC 366
             + CQ+ HWF HKK C
Sbjct:   343 QTCQKTHWFAHKKIC 357

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q8IV38 ANKMY2 "Ankyrin repeat and MYND domain-containing protein 2" [Homo sapiens (taxid:9606)]

 Score = 632 (227.5 bits), Expect = 7.9e-62, P = 7.9e-62
 Identities = 152/378 (40%), Positives = 205/378 (54%)

Query:     3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
             +  E  E+ + I K  +     LLS   +RV+  DE+GMTPL HAAYKG   +C+LLL H
Sbjct:     9 LTQEEKELLEVIGKGTVQEAGTLLSSKNVRVNCLDENGMTPLMHAAYKGKLDMCKLLLRH 68

Query:    63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----V 118
             GADVN  +HEHGY+AL FAALSG  D+   +L AGA++   NSVGRTA+QMAAFV     
Sbjct:    69 GADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDC 128

Query:   119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL--NLLPSL 176
             V +INN+  +  +DYY  P+GL+  PKL P LA PLH  I   N+HPV++ +  N  P L
Sbjct:   129 VTIINNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLVNENPLL 188

Query:   177 ISH--LPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMF 234
                  L    +V+ L+ EK MK               D+ E+   K+H       Y++  
Sbjct:   189 TEEAALNKCYRVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCI 228

Query:   235 IRDCVREFPYREQGDKSCD-LVELFVRKIHRPIHG-EKYVAMFIRDCVREFPYRECMIFK 292
              + C+    + + G+   D L++  ++   R   G   Y    IR+ +R+FPY E  + +
Sbjct:   229 FQKCIN---FLKDGENKLDTLIKSLLKG--RASDGFPVYQEKIIRESIRKFPYCEATLLQ 283

Query:   293 QMVSSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXR 348
             Q+V S+A     SDPT   A SVLT AI G  GF D    C TCGE+             
Sbjct:   284 QLVRSIAPVEIGSDPT---AFSVLTQAITGQVGFVD-VEFCTTCGEKGASKRCSVCKMVI 339

Query:   349 YCDRECQRLHWFIHKKEC 366
             YCD+ CQ+ HWF HKK C
Sbjct:   340 YCDQTCQKTHWFTHKKIC 357

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005929 "cilium" evidence=IEA

UNIPROTKB|Q0VCS9 ANKMY2 "Ankyrin repeat and MYND domain-containing protein 2" [Bos taurus (taxid:9913)]

 Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
 Identities = 153/377 (40%), Positives = 204/377 (54%)

Query:     3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
             +  E  E+ + I K  +     LL    +RV+  DE+GMTPL HAAYKG   +C+LLL H
Sbjct:     9 LTQEEKELLEVIGKGTVQEAGTLLGSKNVRVNCLDENGMTPLMHAAYKGKLDMCKLLLRH 68

Query:    63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----V 118
             GADVN  +HEHGY+AL FAALSG  D+   +L AGA++   NSVGRTA+QMAAFV     
Sbjct:    69 GADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDC 128

Query:   119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL--NLLPSL 176
             V +INN+  + ++DYY  P+GL+  PKL P LA PLH  I   N+HPV++ +  N  P L
Sbjct:   129 VTIINNFFPREKLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLINENPLL 188

Query:   177 ISH--LPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMF 234
                  L    KV+ L+ EK MK               D+ E+   K+H       Y++  
Sbjct:   189 AEEAALNKCYKVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCI 228

Query:   235 IRDCVREFPYREQGDKSCDLVELFVRKIHRPIHG-EKYVAMFIRDCVREFPYRECMIFKQ 293
              + C+     RE  +K   L++  ++   R   G   Y    IR+ +R+FPY E  + +Q
Sbjct:   229 FQKCINFLKDRE--NKLDTLIKSLLKG--RASDGFPVYQEKIIRESIRKFPYCEATLLQQ 284

Query:   294 MVSSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXRY 349
             +V S+A     SDPT   A SVLT AI G  GF D    C TCGE+             Y
Sbjct:   285 LVRSIAPVEIGSDPT---AFSVLTQAITGQVGFVD-VEFCTTCGEKGASKRCSVCKMVIY 340

Query:   350 CDRECQRLHWFIHKKEC 366
             CD+ CQ+ HWF HKK C
Sbjct:   341 CDQTCQKTHWFAHKKIC 357

GO:0005929 "cilium" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|I3L949 ANKMY2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 163/435 (37%), Positives = 227/435 (52%)

Query:     3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
             +  E  E+ + I K  +     LL+   +RV+  DE+GMTPL HAAYKG   +C+LLL H
Sbjct:     9 LTQEEKELLEVIGKGTVQEAGTLLASKNVRVNCLDENGMTPLMHAAYKGKLDMCKLLLRH 68

Query:    63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----V 118
             GADVN  +HEHGY+AL FAALSG  D+   +L AGA++   NSVGRTA+QMAAFV     
Sbjct:    69 GADVNCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDC 128

Query:   119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL--NLLPSL 176
             V +INN+  +  ++YY  P+GL+  PKL P LA PLH  I   N+HPV++ +  N  P L
Sbjct:   129 VTIINNFFPRERLEYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLVNENPLL 188

Query:   177 ISH--LPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMF 234
                  L    KV+ L+ EK MK               D+ E+   K+H       Y++  
Sbjct:   189 AEEAALNKCYKVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCI 228

Query:   235 IRDCVREFPYREQGDKSCD-LVELFVRKIHRPIHG-EKYVAMFIRDCVREFPYRECMIFK 292
              + C+    + + G+   D L++  ++   R   G   Y    IR+ +R+FPY E  + +
Sbjct:   229 FQKCIN---FLKDGENKLDTLIKSLLKG--RASDGFPVYQEKIIRESIRKFPYCEATLLQ 283

Query:   293 QMVSSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXR 348
             Q+V S+A     SDPT   A SVLT AI G  GF D    C TCGE+             
Sbjct:   284 QLVRSIAPVEIGSDPT---AFSVLTQAITGQVGFVD-VEFCTTCGEKGASKRCSVCKMVI 339

Query:   349 YCDRECQRLHWFIHKKEC-------------ARSGPSAQPDDGKLGNAVNGTAGEEKPMV 395
             YCD+ CQ+ HWF HKK C             A    S + ++GKL   +N    EE+P  
Sbjct:   340 YCDQTCQKTHWFAHKKICKNLKDIYEKQQLEAAKEKSEEENNGKLDVNLN-CVNEEQPEA 398

Query:   396 SS-LARSDPTPGFAL 409
              + +++ D  P  A+
Sbjct:   399 ETGISQEDCNPKDAI 413

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1NM13 ANKMY2 "Ankyrin repeat and MYND domain-containing protein 2" [Gallus gallus (taxid:9031)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 151/376 (40%), Positives = 205/376 (54%)

Query:     6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
             E  ++   I+K +++   +LL    + V+  DEHGMTPL HAAYKG   +C+LLL HGAD
Sbjct:    12 EEKDLLGVIAKGNVEEAGRLLGSKNVHVNCLDEHGMTPLMHAAYKGKVDMCRLLLRHGAD 71

Query:    66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----VVAV 121
             VN   HEHGY+AL FA LSG  ++   +L AGA++   NSVGRTA+QMAAFV     V +
Sbjct:    72 VNCNEHEHGYTALMFAGLSGNKEITWMMLEAGAETDVVNSVGRTAAQMAAFVGQHDCVTI 131

Query:   122 INNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL----NLLPSLI 177
             INN+  +  +DYY  P+GL+  PKL   LA PLH  I   N+HPV++ L    N L + +
Sbjct:   132 INNFFPRERLDYYTKPQGLDKEPKLPVKLAGPLHKIITTTNMHPVKIVLLVKENPLLAEV 191

Query:   178 SHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIRD 237
               L    +V+ L+ EK MK            K  D+ E+   K+H       Y++   + 
Sbjct:   192 EALQKCYRVLDLICEKCMK-----------QK--DMNEVLAMKMH-------YISCIFQK 231

Query:   238 CVREFPYREQGDKSCDLVELFVR---KIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQM 294
             CV     RE  DK    ++  ++   K   P++ EK     IR+ +R+FPY E  + +Q+
Sbjct:   232 CVTFLKERE--DKLDGFIKSLLKGRDKDGFPVYQEK----LIRESIRKFPYCEATLLQQL 285

Query:   295 VSSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXRYC 350
             V S+A     SDPT   A SVLT AI G  GF D    C TCGE+             YC
Sbjct:   286 VRSIAPVELGSDPT---AFSVLTQAITGQVGFVDAEF-CTTCGEKGADKRCSVCKMVMYC 341

Query:   351 DRECQRLHWFIHKKEC 366
             D+ CQ+ HWF HKK C
Sbjct:   342 DQNCQKTHWFTHKKVC 357

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2144755 Ankmy2 "ankyrin repeat and MYND domain containing 2" [Mus musculus (taxid:10090)]

 Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
 Identities = 149/377 (39%), Positives = 206/377 (54%)

Query:     3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
             +  E  E+ + I K  +    +LLS   + V+  DE+GMTPL HAAYKG  ++C+LLL H
Sbjct:     9 LTQEEKELLEVIGKGTVQEAGRLLSSKNVHVNCLDENGMTPLMHAAYKGKLEMCKLLLRH 68

Query:    63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----V 118
             GAD +  +HEHGY+AL FAALSG  D+   +L AGA++   NSVGRTA+QMAAFV     
Sbjct:    69 GADASCHQHEHGYTALMFAALSGNKDITWVMLEAGAETDVVNSVGRTAAQMAAFVGQHDC 128

Query:   119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL----NLLP 174
             VA+INN+  +  +DYY  P+GL+  PKL P LA PLH  I   N+HPV++ +    N L 
Sbjct:   129 VAIINNFFPRERLDYYTKPQGLDKEPKLPPKLAGPLHKIITTTNLHPVKIVMLVSENPLL 188

Query:   175 SLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMF 234
             +  + L    +V+ L+ EK MK               D+ E+   K+H       Y++  
Sbjct:   189 ADAAALGKCYRVMDLICEKCMKQR-------------DMNEVLAMKMH-------YISCI 228

Query:   235 IRDCVREFPYREQGDKSCDLVELFVRKIHRPIHG-EKYVAMFIRDCVREFPYRECMIFKQ 293
              + C+    + ++G+   D +   + K  R   G   Y    IR+ +R+FPY E  + +Q
Sbjct:   229 FQKCIT---FLKEGENKLDTLIRSLLK-GRASDGFPVYQEKIIRESIRKFPYCEATLLQQ 284

Query:   294 MVSSLAR----SDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENXXXXXXXXXXXRY 349
             +V S+A     SDPT   A SVLT AI G  GF D    C TCGE+             Y
Sbjct:   285 LVRSIAPVEIGSDPT---AFSVLTQAITGQVGFVD-VEFCTTCGEKGASKRCSVCKMVIY 340

Query:   350 CDRECQRLHWFIHKKEC 366
             CD+ CQ+ HWF HKK C
Sbjct:   341 CDQTCQKTHWFAHKKMC 357

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005929 "cilium" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0042995 "cell projection" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5ZMD2	ANKY2_CHICK	No assigned EC number	0.4052	0.6123	0.7108	yes	N/A
Q0VCS9	ANKY2_BOVIN	No assigned EC number	0.4142	0.6254	0.7556	yes	N/A
Q3TPE9	ANKY2_MOUSE	No assigned EC number	0.4020	0.6179	0.75	yes	N/A
Q8IV38	ANKY2_HUMAN	No assigned EC number	0.4105	0.6235	0.7551	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	534
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-21
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-16
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	5e-16
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	5e-13
pfam01753	39	pfam01753, zf-MYND, MYND finger	4e-12
pfam01753	39	pfam01753, zf-MYND, MYND finger	4e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	7e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	2e-08
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-08
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	9e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	3e-07
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	4e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-07
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-06
smart00248	30	smart00248, ANK, ankyrin repeats	5e-06
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	5e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-05
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	8e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	6e-04
pfam00023	33	pfam00023, Ank, Ankyrin repeat	0.001
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.002
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.003
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.003
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 89.8 bits (223), Expect = 2e-21
 Identities = 42/102 (41%), Positives = 57/102 (55%), Gaps = 2/102 (1%)

Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
            S   ++ V+ LL E+   V+  D  G TPL  AA  G+ +I +LLL+ GADVN+ R + 
Sbjct: 15  ASNGHLEVVKLLL-ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-RDKD 72

Query: 74  GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           G + LH AA +G  DV   LL  GA   A +  GRT   +AA
Sbjct: 73  GNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAA 114

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 77.4 bits (191), Expect = 3e-17
 Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 34  DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
           +  DE G TPL  AA  G+ ++ +LLL++GADVN+  +  G + LH AA +G  ++   L
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN-DGRTPLHLAAKNGHLEIVKLL 59

Query: 94  LSAGAKSYATNSVGRTASQMAAF-----VVVAVINNYIAKSEVDYY 134
           L  GA   A +  G T   +AA      VV  ++ +    +  D  
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKD 105

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 75.0 bits (185), Expect = 1e-16
 Identities = 34/85 (40%), Positives = 49/85 (57%), Gaps = 4/85 (4%)

Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
              +++ V+ LL E    V+L D    T L  AA  GN +I +LLL+HGADVN+ + + 
Sbjct: 5  AKNGNLELVKLLL-EKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNA-KDKD 60

Query: 74 GYSALHFAALSGKDDVCACLLSAGA 98
          G +ALH AA +G  ++   LL  GA
Sbjct: 61 GNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.3 bits (183), Expect = 5e-16
 Identities = 33/81 (40%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
                ++ V+ LL E    V+  D+ G TPL  AA  GN  + +LLL HGADVN+ R + 
Sbjct: 48  AKNGHLEIVKLLL-EKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA-RDKD 105

Query: 74  GYSALHFAALSGKDDVCACLL 94
           G + LH AA +G  +V   LL
Sbjct: 106 GRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 64.6 bits (158), Expect = 5e-13
 Identities = 30/72 (41%), Positives = 40/72 (55%), Gaps = 3/72 (4%)

Query: 44  LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
           L  AA  GN ++ +LLL+ GADVN G      +ALH AA +G  ++   LL  GA   A 
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDT---DTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 104 NSVGRTASQMAA 115
           +  G TA  +AA
Sbjct: 58  DKDGNTALHLAA 69

Length = 91

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 329 CVTCGEEN-ATKKCAKCKTTRYCDRECQRLHWFIHKKEC 366
           C  CG+E     +C++CK+  YC +ECQ+  W  HKKEC
Sbjct: 1   CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39

>gnl|CDD|201954 pfam01753, zf-MYND, MYND finger

 Score = 60.5 bits (147), Expect = 4e-12
 Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)

Query: 429 CVTCGEEN-ATKKCAKCKTTRYCDRECQRLHWFIHKKEC 466
           C  CG+E     +C++CK+  YC +ECQ+  W  HKKEC
Sbjct: 1   CAVCGKEALKLLRCSRCKSVYYCSKECQKADWPYHKKEC 39

Length = 39

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 64.8 bits (157), Expect = 7e-12
 Identities = 47/125 (37%), Positives = 60/125 (48%), Gaps = 9/125 (7%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQIC-----QLLLDHGA--DVN 67
           SK D   V KLL      V+  D  G TPL  AA  GN         +LLL+ GA  DVN
Sbjct: 82  SKGDDKIV-KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVN 140

Query: 68  SGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA-SQMAAFVVVAVINNYI 126
           + R E G + LH+AAL+G  D+   LL AGA   + NS G TA    A    + ++   +
Sbjct: 141 NLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLL 200

Query: 127 AKSEV 131
            K   
Sbjct: 201 DKGLH 205

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 23/54 (42%), Positives = 33/54 (61%), Gaps = 1/54 (1%)

Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
              +++ V+ LL EH   V+  D+ G T L  AA  GN +I +LLL+HGAD+N
Sbjct: 36 ARNGNLEIVKLLL-EHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 53.1 bits (128), Expect = 2e-09
 Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 25 LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
          LL    + ++  D +G TPL  AA  G  ++ Q LL  G D+N  R   G +AL  A
Sbjct: 1  LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL-RDSDGLTALDLA 56

Length = 56

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLL 94
          G T L  AA  G  ++ + LL+ G D+N    E G +ALH AA +G  +V   LL
Sbjct: 1  GRTALHKAAISGRLELVKYLLEKGVDINR-TDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 27/80 (33%), Positives = 42/80 (52%)

Query: 21  NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHF 80
              +LL +HK  +D+ D  G TPL  A  KG+  IC++LLD GA+++        +AL +
Sbjct: 149 KGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCY 208

Query: 81  AALSGKDDVCACLLSAGAKS 100
           A  + K D+    +  GA  
Sbjct: 209 AIENNKIDIVRLFIKRGADC 228

Length = 413

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 53.3 bits (127), Expect = 6e-08
 Identities = 39/121 (32%), Positives = 53/121 (43%), Gaps = 13/121 (10%)

Query: 8   NEIFDFISKNDIDNVQKLLSEHKLRVDLY----DEHGMTPLQHAAYKGNKQICQLLLDHG 63
            ++  ++    +          KL VD +    D  G  PL  AA KG+ +I +LLL  G
Sbjct: 37  KKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASG 96

Query: 64  ADVNSGRHEHGYSALHFAALSGKD-----DVCACLLSAGAKSYATNSV---GRTASQMAA 115
           ADVN+   + G + LH AAL+G       +V   LL AGA     N     G T    AA
Sbjct: 97  ADVNAKDAD-GDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155

Query: 116 F 116
            
Sbjct: 156 L 156

Length = 235

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.9 bits (115), Expect = 9e-08
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVN 67
           G TPL  AA  G+ ++ +LLL+ GADVN
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 38/158 (24%), Positives = 60/158 (37%), Gaps = 22/158 (13%)

Query: 37  DEHGMTPLQHAAYKGNKQICQL--LLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLL 94
           D  G TPL   A   + +   +  LL  G  +N+ R+ +G + LH+AA+      C  L+
Sbjct: 219 DMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA-RNRYGQTPLHYAAVFNNPRACRRLI 277

Query: 95  SAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPL 154
           + GA   A +S G T     +     V NN       +   V   L   P  + + A  L
Sbjct: 278 ALGADINAVSSDGNTP---LSL---MVRNN-------NGRAVRAALAKNPSAETV-AATL 323

Query: 155 HTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSE 192
           +T  +     P       +  ++          SLL E
Sbjct: 324 NTASVAGGDIPSDATRLCVAKVVLRGAF-----SLLPE 356

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 46.8 bits (112), Expect = 4e-07
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
          +        ++ V+ LL E  + ++  DE G T L  AA  GN ++ +LLL
Sbjct: 5  LHKAAISGRLELVKYLL-EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 52.4 bits (126), Expect = 4e-07
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 13  FISKN-DID--NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
            I K  DI+  N    L  + + +++ D +G TPL +A Y  N +  + LLD GA+ N  
Sbjct: 162 LIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNL- 220

Query: 70  RHEHGYSALHFAALSGKDDVCACLLSAGA 98
            +++G + LH A L+   ++   LL+ G 
Sbjct: 221 VNKYGDTPLHIAILNNNKEIFKLLLNNGP 249

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 5/96 (5%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYK--GNKQICQLLLDHGADVNSGRHE 72
           +  D+  + KLL E+   V+  D +G+TPL +A  K   +  I + LLD+GA+VN    +
Sbjct: 81  NLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSD 140

Query: 73  HGYSALHFAALSGKDD--VCACLLSAGAKSYATNSV 106
            G + LH    S K D  +   L+  G    A N V
Sbjct: 141 -GENLLHLYLESNKIDLKILKLLIDKGVDINAKNRV 175

Length = 422

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 43.0 bits (102), Expect = 5e-06
 Identities = 16/29 (55%), Positives = 20/29 (68%)

Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVN 67
           G TPL  AA  GN ++ +LLLD GAD+N
Sbjct: 1  DGRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 42.6 bits (101), Expect = 5e-06
 Identities = 16/29 (55%), Positives = 21/29 (72%)

Query: 39 HGMTPLQHAAYKGNKQICQLLLDHGADVN 67
           G TPL  AA  GN ++ +LLL+HGAD+N
Sbjct: 1  DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 18/56 (32%), Positives = 26/56 (46%)

Query: 59  LLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           LL+HG    +    +G + LH AA  G  ++   LL  G      +S G TA  +A
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 28/105 (26%), Positives = 53/105 (50%), Gaps = 5/105 (4%)

Query: 8   NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
           N +F ++ K+DI+ V+K +       DLY+    + L+    K N +I + L+++GADVN
Sbjct: 23  NPLFYYVEKDDIEGVKKWIKFVNDCNDLYETPIFSCLEKD--KVNVEILKFLIENGADVN 80

Query: 68  SGRHEHGYSALHFAALSGKD---DVCACLLSAGAKSYATNSVGRT 109
               ++  SALH      K+   ++   L+ +G+     +  G+ 
Sbjct: 81  FKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKN 125

Length = 209

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 11/97 (11%)

Query: 21  NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQI----CQLLLDHGADVNSGRHEHGYS 76
           +V KLL +    V+  D+ G TPL    Y     I     +LLL  GADVN+    +G +
Sbjct: 98  DVIKLLIKAGADVNAKDKVGRTPLH--VYLSGFNINPKVIRLLLRKGADVNA-LDLYGMT 154

Query: 77  ALHFAALSGKD---DVCACLLSAGAKSYATNSVGRTA 110
            L    L  ++   ++   L+ AGA  YA +   R+ 
Sbjct: 155 PLA-VLLKSRNANVELLRLLIDAGADVYAVDDRFRSL 190

Length = 471

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 36/116 (31%), Positives = 53/116 (45%), Gaps = 6/116 (5%)

Query: 2   SIPMEGNE--IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHA-AYKGNKQICQL 58
           +IP + N   +   +   +   V  LL E+    D  D+ G TPL  +  Y  +  I +L
Sbjct: 195 NIPDKTNNSPLHHAVKHYNKPIVHILL-ENGASTDARDKCGNTPLHISVGYCKDYDILKL 253

Query: 59  LLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           LL+HG DVN+  +  G +ALH +  S  +     LL  GA   + NS   T    A
Sbjct: 254 LLEHGVDVNAKSYILGLTALHSSIKS--ERKLKLLLEYGADINSLNSYKLTPLSSA 307

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 6e-04
 Identities = 17/43 (39%), Positives = 24/43 (55%)

Query: 74  GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           G +ALH AA+SG+ ++   LL  G     T+  G TA  +AA 
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAE 43

Length = 54

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSYATN 104
            G + LH AA +G  +V   LL AGA   A +
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 39/117 (33%), Positives = 60/117 (51%), Gaps = 10/117 (8%)

Query: 1   MSIPMEGNEIFDFI---SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQ---HAAYKGNKQ 54
           + I ME   ++D++   S   ++ V++LL+     V+   E+G TPL    H + +  K 
Sbjct: 7   VDIIMEA-ALYDYLLNASNVTVEEVRRLLAAGA-DVNFRGEYGKTPLHLYLHYSSEKVKD 64

Query: 55  ICQLLLDHGADVNSGRHEHGYSALHFAALSG-KDDVCACLLSAGAKSYATNSVGRTA 110
           I +LLL+ GADVN      G++ LH    +    DV   L+ AGA   A + VGRT 
Sbjct: 65  IVRLLLEAGADVN-APERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTP 120

Length = 471

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 0.002
 Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 1/78 (1%)

Query: 8   NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
           +E+ D + + D+  V++LL   K   D++ + GMTPL  A       I +LL+  GAD +
Sbjct: 70  SELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPD 129

Query: 68  SGRHEHGYSALHFAALSG 85
               +  +S LH A + G
Sbjct: 130 IPNTDK-FSPLHLAVMMG 146

Length = 413

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 18/46 (39%), Positives = 26/46 (56%)

Query: 54  QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
           +I +LLL +GAD+N      G +ALH+A  +    +   LLS GA 
Sbjct: 148 EITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGAN 193

Length = 477

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.9 bits (93), Expect = 0.003
 Identities = 16/54 (29%), Positives = 30/54 (55%)

Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
          I   DI+ ++K++      +++  +   TPL  A   G+ +I +L + HGAD+N
Sbjct: 9  IYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADIN 62

Length = 434

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 39.7 bits (93), Expect = 0.004
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 28/123 (22%)

Query: 14  ISKNDIDNVQKLLSEHKLRVD--------LYDE------HGMTPLQHAAYKGNKQICQLL 59
           IS   +D V+ +L  H L             D+       G+T L  AA++ N +I +LL
Sbjct: 89  ISLEYVDAVEAILL-HLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLL 147

Query: 60  LDHGADVN---------SGRHE----HGYSALHFAALSGKDDVCACLLSAGAKSYATNSV 106
           L+ GA V            +      HG S L+ AA  G   + A L    A     +S+
Sbjct: 148 LERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSL 207

Query: 107 GRT 109
           G T
Sbjct: 208 GNT 210

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	534
KOG1710|consensus	396		100.0
KOG4412|consensus	226		99.96
KOG4412|consensus	226		99.96
KOG1710|consensus	396		99.96
PHA02791	284	ankyrin-like protein; Provisional	99.95
KOG0509|consensus	600		99.94
PHA02791	284	ankyrin-like protein; Provisional	99.94
KOG0509|consensus	600		99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.92
KOG0508|consensus	615		99.92
PHA02875	413	ankyrin repeat protein; Provisional	99.92
KOG0508|consensus	615		99.91
PHA02946	446	ankyin-like protein; Provisional	99.91
PHA02859	209	ankyrin repeat protein; Provisional	99.91
PHA03100	480	ankyrin repeat protein; Provisional	99.91
PHA02946	446	ankyin-like protein; Provisional	99.91
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.9
PHA03100	480	ankyrin repeat protein; Provisional	99.9
PHA03095	471	ankyrin-like protein; Provisional	99.89
PHA02859	209	ankyrin repeat protein; Provisional	99.89
PHA02878	477	ankyrin repeat protein; Provisional	99.88
PHA02989	494	ankyrin repeat protein; Provisional	99.88
PHA02798	489	ankyrin-like protein; Provisional	99.87
PHA02876	682	ankyrin repeat protein; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.87
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.87
PHA02743	166	Viral ankyrin protein; Provisional	99.87
KOG0510|consensus	929		99.87
PHA02884	300	ankyrin repeat protein; Provisional	99.86
KOG0510|consensus	929		99.86
KOG0512|consensus	228		99.86
PHA03095	471	ankyrin-like protein; Provisional	99.86
KOG0502|consensus	296		99.86
PHA02876	682	ankyrin repeat protein; Provisional	99.86
KOG0514|consensus	452		99.86
PHA02917	661	ankyrin-like protein; Provisional	99.85
PHA02741	169	hypothetical protein; Provisional	99.85
PHA02795	437	ankyrin-like protein; Provisional	99.85
PHA02743	166	Viral ankyrin protein; Provisional	99.84
KOG0195|consensus	448		99.84
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0514|consensus	452		99.82
PHA02917	661	ankyrin-like protein; Provisional	99.81
KOG4177|consensus	1143		99.81
PHA02730	672	ankyrin-like protein; Provisional	99.81
KOG4177|consensus	1143		99.8
KOG0502|consensus	296		99.8
PHA02884	300	ankyrin repeat protein; Provisional	99.8
KOG0507|consensus	854		99.8
KOG0505|consensus	527		99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.79
PHA02736	154	Viral ankyrin protein; Provisional	99.78
PHA02730	672	ankyrin-like protein; Provisional	99.78
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.77
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.76
KOG0507|consensus	854		99.76
KOG0512|consensus	228		99.75
KOG0505|consensus	527		99.75
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.74
KOG0195|consensus	448		99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.72
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.71
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.7
KOG3676|consensus	782		99.69
PHA02792	631	ankyrin-like protein; Provisional	99.68
KOG4214|consensus	117		99.68
PHA02792	631	ankyrin-like protein; Provisional	99.68
KOG4369|consensus	2131		99.61
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.6
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.54
KOG4214|consensus	117		99.53
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.53
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.5
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.46
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.46
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.45
KOG0515|consensus	752		99.45
KOG3676|consensus	782		99.44
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.44
KOG4369|consensus	2131		99.43
KOG0515|consensus	752		99.35
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.35
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	99.05
KOG0783|consensus	1267		98.94
KOG0818|consensus	669		98.93
KOG0782|consensus	1004		98.9
KOG0506|consensus	622		98.87
PF13606	30	Ank_3: Ankyrin repeat	98.86
PF13606	30	Ank_3: Ankyrin repeat	98.79
KOG0818|consensus	669		98.77
KOG0506|consensus	622		98.75
PF01753	37	zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin	98.74
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.72
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.69
KOG3609|consensus	822		98.63
KOG2384|consensus	223		98.53
KOG0522|consensus	560		98.51
KOG0705|consensus	749		98.51
KOG0522|consensus	560		98.5
KOG0783|consensus	1267		98.48
KOG0782|consensus	1004		98.46
KOG0705|consensus	749		98.4
KOG0521|consensus	785		98.36
KOG0511|consensus	516		98.19
KOG3609|consensus	822		98.08
KOG0520|consensus	975		97.97
KOG2384|consensus	223		97.97
KOG0520|consensus	975		97.97
KOG0521|consensus	785		97.92
KOG0511|consensus	516		97.8
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.06
KOG2505|consensus	591		97.02
KOG3612|consensus	588		97.01
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.97
KOG2505|consensus	591		96.96
KOG3612|consensus	588		96.61
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	95.82
KOG2857|consensus	157		94.76
PLN03158	396	methionine aminopeptidase; Provisional	94.12
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.84
PF04438	30	zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc	93.44
PF13824	55	zf-Mss51: Zinc-finger of mitochondrial splicing su	92.22
KOG2061|consensus	362		91.57
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	89.76
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	89.56
KOG3362|consensus	156		88.71
PLN03158	396	methionine aminopeptidase; Provisional	87.54
KOG3362|consensus	156		86.68
KOG4317|consensus	383		84.9
KOG2061|consensus	362		84.12
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	82.73

>KOG1710|consensus

Probab=100.00  E-value=1e-46  Score=341.05  Aligned_cols=342  Identities=38%  Similarity=0.645  Sum_probs=300.2

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      +|...++|+.++..|+......||.. --++|.+|..|+|+|..|++.|+.++|++||+.|+|||..++..++||||+|+
T Consensus         9 ld~~~~~Lle~i~Kndt~~a~~LLs~-vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAA   87 (396)
T KOG1710|consen    9 LDAPKSPLLEAIDKNDTEAALALLST-VRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAA   87 (396)
T ss_pred             ccchhhHHHHHHccCcHHHHHHHHHH-hhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHH
Confidence            56778999999999999999999987 44589999999999999999999999999999999999989999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhc----CCceeeccCCCCCCCCCCCCCCchHHHHH
Q psy2859          83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKS----EVDYYIVPRGLETTPKLDPILAEPLHTFI  158 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~----~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  158 (534)
                      .+|+.++.++||+.|+.+...|.-|+|+-.+|+.-|+.+.|..+.++    ..+.+..+.++...+...+.-.-++|..+
T Consensus        88 LSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iINN~~t~~~leyyt~p~g~~~ep~~Pp~La~~~H~~~  167 (396)
T KOG1710|consen   88 LSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAIINNHITIDVLEYYTRPKGYEGEPEYPPELAVFIHSLC  167 (396)
T ss_pred             HcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHHhccccHHHHHHhccccccCCCCCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888777654    33455555666666777777777899999


Q ss_pred             HhcCchHHHHHHhh--CCcccccccchHHHHHHHHHhhhhcCCCcccccccCCCcchHHHHHHHhcccchhHHHHHHHHH
Q psy2859         159 MQVNIHPVRVALNL--LPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHGEKYVAMFIR  236 (534)
Q Consensus       159 ~~~~~~~v~~Ll~~--~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~l~k~~~~~~~~~~~~~~~~  236 (534)
                      ..-|++.|+..+..  +|++.........++++++++.++. .|.||+++            +|+|    |+...++++.
T Consensus       168 t~~nlHPVkIi~~v~~~pll~~~~~l~k~v~dlvcEK~m~~-~d~NEila------------~K~h----y~~~~irc~~  230 (396)
T KOG1710|consen  168 TSHNLHPVKIIFRVSKYPLLLKYKKLIKYVIDLVCEKQMRC-KDSNEILA------------LKLH----YILFSIRCTS  230 (396)
T ss_pred             hcccccceEEEEEcccCcHHHHHHHHHHHHHHHHHHHHHhh-hhHHHHHH------------HHHH----HHHHHHhHHH
Confidence            99999999887655  7877776677777999999999988 99999999            9999    8887777776


Q ss_pred             HHhhhccccccCCCchhHHHHHHHHHhccCC--ch-hHHHHHHHHHHhcCCCCcchHHHHHHHHhccCCC---CCcchhH
Q psy2859         237 DCVREFPYREQGDKSCDLVELFVRKIHRPIH--GE-KYVAMFIRDCVREFPYRECMIFKQMVSSLARSDP---TPGFALS  310 (534)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~i~~~~~~~p~~~~~~~~~~v~~l~~~~~---~~~~~~~  310 (534)
                      .+..    ...+++....++.|++.+++++.  +. .|++.++|+++++||++++++++++++++.+++.   |+  +..
T Consensus       231 qfk~----~nkeKsgEnk~~~~~K~ilk~~~~dg~~~y~e~~lRe~vr~FPy~e~tl~~ql~~~~~~~~ig~~P~--A~~  304 (396)
T KOG1710|consen  231 QFKE----SNKEKSGENKSLQYAKLILKWQEGDGTRRYLEVMLREAVRSFPYKESTLHDQLQKALQKSQIGERPS--AYE  304 (396)
T ss_pred             HHHH----hhcccCchhHHHHHHHHHHhhhccCCcHHHHHHHHHHHHHhCCchHHHHHHHHHHHhChhhccCCCc--HHH
Confidence            5543    22234455679999999999873  33 9999999999999999999999999999999865   66  889


Q ss_pred             HHHHHhhcCCCCCCCCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhcccCCC
Q psy2859         311 VLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARS  369 (534)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~  369 (534)
                      ++..+++|++..++ -++|..||.+.+.++|+.|+.+.||+++||+.||..||++|..+
T Consensus       305 vl~qAi~Gqr~~~d-~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L  362 (396)
T KOG1710|consen  305 VLVQAIFGQRIAAD-CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL  362 (396)
T ss_pred             HHHHHHcCceeEEe-cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            99999999999888 78999999998899999999999999999999999999999855

>KOG4412|consensus

Probab=99.96  E-value=5.5e-30  Score=217.80  Aligned_cols=154  Identities=27%  Similarity=0.323  Sum_probs=98.9

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      ++||+|+..|..+.|..||.+.++.+|.+|..||||||+||..|+.++|+.|+.+ |+|+|. .+..|.|+||+|+..|.
T Consensus        40 t~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna-~tn~G~T~LHyAagK~r  118 (226)
T KOG4412|consen   40 TPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNA-TTNGGQTCLHYAAGKGR  118 (226)
T ss_pred             ceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcce-ecCCCcceehhhhcCCh
Confidence            3444444445555555555555666666666666666666666666666666665 666666 56666666666666666


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      .+|+++|+++|+.++++|..|.||||-|+..|...++++|+..|+.+|.          .|..|+||||.|+-.|+.++.
T Consensus       119 ~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~----------qDk~G~TpL~~al~e~~~d~a  188 (226)
T KOG4412|consen  119 LEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNT----------QDKYGFTPLHHALAEGHPDVA  188 (226)
T ss_pred             hhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCc----------ccccCccHHHHHHhccCchHH
Confidence            6666666666666666666666666666666666666666666666533          366666666666666666666


Q ss_pred             HHHHhh
Q psy2859         167 RVALNL  172 (534)
Q Consensus       167 ~~Ll~~  172 (534)
                      .+|++.
T Consensus       189 ~lLV~~  194 (226)
T KOG4412|consen  189 VLLVRA  194 (226)
T ss_pred             HHHHHh
Confidence            666555

>KOG4412|consensus

Probab=99.96  E-value=2.3e-29  Score=214.05  Aligned_cols=173  Identities=24%  Similarity=0.268  Sum_probs=150.5

Q ss_pred             hHHHHHHhCC-HHHHHHHHHhCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           9 EIFDFISKND-IDNVQKLLSEHKLRVDLYDE-HGMTPLQHAAYKGNKQICQLLL-DHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         9 ~l~~aa~~g~-~~~v~~lL~~~g~~~n~~d~-~g~TpLh~Aa~~g~~~iv~~Ll-~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      ++.++++... ...+.+++....-.+|.++. +|+||||+||+.|+.+||.+|+ +.+..+|. .|..||||||+|+..|
T Consensus         5 ~~~~~~~~~~~~~kveel~~s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~dd-kDdaGWtPlhia~s~g   83 (226)
T KOG4412|consen    5 SLGKAICENCEEFKVEELIQSDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDD-KDDAGWTPLHIAASNG   83 (226)
T ss_pred             chHHHHHhhchHHHHHHHHhcChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCC-ccccCCchhhhhhhcC
Confidence            3444554444 55677777765557787765 9999999999999999999999 66888888 7999999999999999


Q ss_pred             CHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          86 KDDVCACLLSA-GAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        86 ~~~iv~~Ll~~-ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      +.++|+.|+.+ |+|+|.+++.|+|+||+|+..|..+|+++|+.+|+.+++          .|..|.||||.|+..|++.
T Consensus        84 ~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~----------kD~~~qtplHRAAavGklk  153 (226)
T KOG4412|consen   84 NDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRI----------KDKQGQTPLHRAAAVGKLK  153 (226)
T ss_pred             cHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcc----------cccccCchhHHHHhccchh
Confidence            99999999999 999999999999999999999999999999999999844          4889999999999999999


Q ss_pred             HHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         165 PVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       165 ~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      ++++|+..            +|++.+...++.++..+|..
T Consensus       154 vie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~  193 (226)
T KOG4412|consen  154 VIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVR  193 (226)
T ss_pred             hHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHH
Confidence            99999976            77887777777777777754

>KOG1710|consensus

Probab=99.96  E-value=1.7e-28  Score=222.96  Aligned_cols=335  Identities=23%  Similarity=0.266  Sum_probs=212.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCCCCHHHHHHHhc
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT-NSVGRTASQMAAFVV  118 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~-~~~G~TpL~~A~~~~  118 (534)
                      -..||.-++-.|+.+-+..||..--++|. .|..|+|+|..|+..|+.++|++||+.|+|+|.. +..++||||+|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn~-~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVNQ-RDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhhc-cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            35799999999999999999988777998 8999999999999999999999999999999864 557899999999999


Q ss_pred             HHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhhCCcccccccchHHHHHHHHHhhhhcC
Q psy2859         119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQMKAG  198 (534)
Q Consensus       119 ~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~p~~~~~~~~~~~~~~~l~~~~~~~~  198 (534)
                      +.++.++|++.|+..+.+          +..|+|+-..|+.-|+.++|..+-++.+         .+.++++..   .++
T Consensus        91 n~dvcrllldaGa~~~~v----------NsvgrTAaqmAAFVG~H~CV~iINN~~t---------~~~leyyt~---p~g  148 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYLV----------NSVGRTAAQMAAFVGHHECVAIINNHIT---------IDVLEYYTR---PKG  148 (396)
T ss_pred             CchHHHHHHhccCccccc----------cchhhhHHHHHHHhcchHHHHHHhcccc---------HHHHHHhcc---ccc
Confidence            999999999999997554          5679999999999999999999887755         444544432   111


Q ss_pred             CCcccccccCCCcchHHHHHHHhccc----chhHHHHHHHHHHHhhhccccccCCCchhHHHHHHHHHhccCC-------
Q psy2859         199 PETNEIIQGDKPCDLVELFVRKIHRP----IHGEKYVAMFIRDCVREFPYREQGDKSCDLVELFVRKIHRPIH-------  267 (534)
Q Consensus       199 ~~~~~~l~~~~~~~~~~~~l~k~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------  267 (534)
                      .+..+-+.        ......+|..    .+++..|+..+.++-. +..  -.......+|..+++-++.++       
T Consensus       149 ~~~ep~~P--------p~La~~~H~~~t~~nlHPVkIi~~v~~~pl-l~~--~~~l~k~v~dlvcEK~m~~~d~NEila~  217 (396)
T KOG1710|consen  149 YEGEPEYP--------PELAVFIHSLCTSHNLHPVKIIFRVSKYPL-LLK--YKKLIKYVIDLVCEKQMRCKDSNEILAL  217 (396)
T ss_pred             cCCCCCCC--------HHHHHHHHHHHhcccccceEEEEEcccCcH-HHH--HHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence            11111000        0000111100    0000011000000000 000  000000134455555444442       


Q ss_pred             chhHHHHHHHHHHh----cCCCCcchHHHHHHHHhccCCCCCcchhHHHHHHhhcCCCCCCCCCcCCCCCCCCCCCCCCC
Q psy2859         268 GEKYVAMFIRDCVR----EFPYRECMIFKQMVSSLARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAK  343 (534)
Q Consensus       268 ~~~~~~~~i~~~~~----~~p~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~c~~~~~~~~c~~  343 (534)
                      +++|+...||...+    ++...-......+++.+.+.....|+..+ ++..+                      +.|. 
T Consensus       218 K~hy~~~~irc~~qfk~~nkeKsgEnk~~~~~K~ilk~~~~dg~~~y-~e~~l----------------------Re~v-  273 (396)
T KOG1710|consen  218 KLHYILFSIRCTSQFKESNKEKSGENKSLQYAKLILKWQEGDGTRRY-LEVML----------------------REAV-  273 (396)
T ss_pred             HHHHHHHHHhHHHHHHHhhcccCchhHHHHHHHHHHhhhccCCcHHH-HHHHH----------------------HHHH-
Confidence            33676666665443    22222223455666666665444443332 22111                      0010 


Q ss_pred             CCceeeCChhHHHHhhhhhhcccCCCCCCCCCCCCCCCCccCCCCCCCCcccccccCCCCCCCcccccccccccCCCCCC
Q psy2859         344 CKTTRYCDRECQRLHWFIHKKECARSGPSAQPDDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAINGHRGFA  423 (534)
Q Consensus       344 c~~~~yc~~~cq~~~~~~h~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (534)
                       +.+.||..+=       |...-+.+.+.                         .+..++   .+..++..++.|.++..
T Consensus       274 -r~FPy~e~tl-------~~ql~~~~~~~-------------------------~ig~~P---~A~~vl~qAi~Gqr~~~  317 (396)
T KOG1710|consen  274 -RSFPYKESTL-------HDQLQKALQKS-------------------------QIGERP---SAYEVLVQAIFGQRIAA  317 (396)
T ss_pred             -HhCCchHHHH-------HHHHHHHhChh-------------------------hccCCC---cHHHHHHHHHcCceeEE
Confidence             2334543221       11111111111                         111122   26777888999999887


Q ss_pred             CCCcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhcccc
Q psy2859         424 DDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARS  469 (534)
Q Consensus       424 ~~~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~  469 (534)
                      + ...|..||.+.+.++|+.||.+.||+++||+.||..||++|..+
T Consensus       318 d-~~fCstCG~~ga~KrCs~CKav~YCdqeCQk~hWf~HKK~C~~L  362 (396)
T KOG1710|consen  318 D-CQFCSTCGHPGAKKRCSQCKAVAYCDQECQKFHWFIHKKVCSFL  362 (396)
T ss_pred             e-cccccccCCCCccchhhhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            7 77999999998899999999999999999999999999999976

>PHA02791 ankyrin-like protein; Provisional

Probab=99.95  E-value=8.9e-27  Score=225.51  Aligned_cols=181  Identities=17%  Similarity=0.179  Sum_probs=151.3

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL   83 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~   83 (534)
                      |.+|.++++.|...+...+.++|.+.|+++|..+  |+||||+|+..|+.++|++|+.+|++++. .|..|+||||+|+.
T Consensus        27 D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~-~d~~G~TpLh~Aa~  103 (284)
T PHA02791         27 DVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQ-FDDKGNTALYYAVD  103 (284)
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHH
Confidence            4445554444444444555556666799998764  78999999999999999999999999999 89999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCC-CCCCchHHHHHHhc
Q psy2859          84 SGKDDVCACLLSAGAKSYATNSVGR-TASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLD-PILAEPLHTFIMQV  161 (534)
Q Consensus        84 ~g~~~iv~~Ll~~ga~~~~~~~~G~-TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A~~~~  161 (534)
                      .|+.++|++|+++|++++.++..|+ ||||+|+..++.+++++|+..+.+..            + ..|.||||+|+..|
T Consensus       104 ~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~------------d~~~g~TpLh~Aa~~g  171 (284)
T PHA02791        104 SGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF------------DLAILLSCIHITIKNG  171 (284)
T ss_pred             cCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc------------ccccCccHHHHHHHcC
Confidence            9999999999999999999998885 89999999999999999998865421            2 24899999999999


Q ss_pred             CchHHHHHHhh------------CC-cccccccchHHHHHHHHHhhhhcCCCccc
Q psy2859         162 NIHPVRVALNL------------LP-SLISHLPSVRKVVSLLSEKQMKAGPETNE  203 (534)
Q Consensus       162 ~~~~v~~Ll~~------------~p-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  203 (534)
                      +.+++++|+++            +| ++.+...+..+++++|.+    .+.+++.
T Consensus       172 ~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~----~Ga~in~  222 (284)
T PHA02791        172 HVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFK----YDINIYS  222 (284)
T ss_pred             CHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHH----CCCCCcc
Confidence            99999999987            24 778889999999999965    4455554

>KOG0509|consensus

Probab=99.94  E-value=7.7e-27  Score=235.22  Aligned_cols=174  Identities=25%  Similarity=0.268  Sum_probs=146.5

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      ...++.|+..|+.+.|+.+++..|.++|..|.+|.|+||+||.+++++++++||++||+||..-..-|.||||+|+++|+
T Consensus        45 ~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~  124 (600)
T KOG0509|consen   45 LDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGH  124 (600)
T ss_pred             hhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCc
Confidence            34577888888888888888887888888888899999999999999999999999999988444778889999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      +.+|.+|+++|||++.+|..|.||||+|+..++..++-+|+.+++|++.          .|.+|+||||+|+.+|+...+
T Consensus       125 ~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~----------~D~~grTpLmwAaykg~~~~v  194 (600)
T KOG0509|consen  125 ISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDL----------RDNNGRTPLMWAAYKGFALFV  194 (600)
T ss_pred             HHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCC----------cCCCCCCHHHHHHHhcccHHH
Confidence            9999999999999999999999999999988888888888888888744          477888888888888888877


Q ss_pred             HHHHhh-------------CCcccccccchHHHHHHH
Q psy2859         167 RVALNL-------------LPSLISHLPSVRKVVSLL  190 (534)
Q Consensus       167 ~~Ll~~-------------~p~~~~~~~~~~~~~~~l  190 (534)
                      ..||..             +|++.+...++..++.++
T Consensus       195 ~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll  231 (600)
T KOG0509|consen  195 RRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLL  231 (600)
T ss_pred             HHHHHhcccccccccccCCchHHHHHhcCCcceEehh
Confidence            777755             678888888888877744

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=3.7e-25  Score=214.29  Aligned_cols=176  Identities=14%  Similarity=0.133  Sum_probs=145.4

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-hHHHHHHHc
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY-SALHFAALS   84 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~-TpLh~A~~~   84 (534)
                      +.++||.|+..|+.+.+ ++|...|+++|.+|..|+||||+|+..|+.+++++|+++|++++. .+..|+ ||||+|+..
T Consensus        61 ~~TpLh~Aa~~g~~eiV-~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~-~~~~g~~TpL~~Aa~~  138 (284)
T PHA02791         61 NEFPLHQAATLEDTKIV-KILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVML  138 (284)
T ss_pred             CCCHHHHHHHCCCHHHH-HHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCCCCcHHHHHHHHc
Confidence            45667777777766655 555556999999999999999999999999999999999999998 777774 999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCch-HHHHHHhcC
Q psy2859          85 GKDDVCACLLSAGAKSYATN-SVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEP-LHTFIMQVN  162 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~-~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~  162 (534)
                      |+.++|++|+++|++.  .| ..|.||||+|+..|+.+++++|+++|++++..          +..|.|| ||+|+..|+
T Consensus       139 g~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~----------d~~g~t~~L~~Aa~~~~  206 (284)
T PHA02791        139 NDVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTN----------NSLLFIPDIKLAIDNKD  206 (284)
T ss_pred             CCHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcc----------cCCCCChHHHHHHHcCC
Confidence            9999999999997653  23 35899999999999999999999999998543          5667876 999999999


Q ss_pred             chHHHHHHhhCC-----cccccccchHHHHHHHHHhhh
Q psy2859         163 IHPVRVALNLLP-----SLISHLPSVRKVVSLLSEKQM  195 (534)
Q Consensus       163 ~~~v~~Ll~~~p-----~~~~~~~~~~~~~~~l~~~~~  195 (534)
                      .++|++|+++..     ..-+..-+..+++++|++...
T Consensus       207 ~e~v~lLl~~Ga~in~~~~~~~~l~~~e~~~~ll~~~~  244 (284)
T PHA02791        207 LEMLQALFKYDINIYSVNLENVLLDDAEIAKMIIEKHV  244 (284)
T ss_pred             HHHHHHHHHCCCCCccCcccCccCCCHHHHHHHHHhhh
Confidence            999999999822     222333466778888876544

>KOG0509|consensus

Probab=99.93  E-value=3.1e-26  Score=230.82  Aligned_cols=160  Identities=29%  Similarity=0.370  Sum_probs=148.2

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHH
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA   81 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d-~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A   81 (534)
                      -|.+|.+++|+|+-+|...|.++|+++|++||..+ ..|.||||+|+++|++.+|.+|+++|||++. .|..|.||||+|
T Consensus        74 ~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~-~D~~G~~~lHla  152 (600)
T KOG0509|consen   74 PDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTL-KDKQGLTPLHLA  152 (600)
T ss_pred             CCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCce-ecCCCCcHHHHH
Confidence            35688999999999999999999999999999997 7789999999999999999999999999999 999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859          82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus        82 ~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      +..|+.-+|-+||.+|+++|.+|.+|+||||+|+..+....+..|+..++.+...         .|..|.||||+|+..|
T Consensus       153 ~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~---------d~~~g~TpLHwa~~~g  223 (600)
T KOG0509|consen  153 AQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLT---------DDNHGNTPLHWAVVGG  223 (600)
T ss_pred             HHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccccccc---------ccccCCchHHHHHhcC
Confidence            9999999999999999999999999999999999999988899999999998644         2477999999999999


Q ss_pred             CchHHHHHHhh
Q psy2859         162 NIHPVRVALNL  172 (534)
Q Consensus       162 ~~~~v~~Ll~~  172 (534)
                      |..++.+|++-
T Consensus       224 N~~~v~Ll~~g  234 (600)
T KOG0509|consen  224 NLTAVKLLLEG  234 (600)
T ss_pred             CcceEehhhhc
Confidence            99999955554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=224.11  Aligned_cols=162  Identities=19%  Similarity=0.150  Sum_probs=110.6

Q ss_pred             hCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy2859          28 EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVG  107 (534)
Q Consensus        28 ~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G  107 (534)
                      ++|++++..+..|.||||+|+..|+.++|++|++.|++++...+..|.||||+|+..|+.+++++|+++|++++.++..|
T Consensus        56 ~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g  135 (413)
T PHA02875         56 KHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDK  135 (413)
T ss_pred             hCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCC
Confidence            33555555444555555555555555555555555554433245567788888888888888888888888888888888


Q ss_pred             CCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh-------------CC
Q psy2859         108 RTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL-------------LP  174 (534)
Q Consensus       108 ~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------~p  174 (534)
                      .||||+|+..|..+++++|+++|++++.          .|..|.||||+|+..|+.+++++|++.             +|
T Consensus       136 ~tpLh~A~~~~~~~~v~~Ll~~g~~~~~----------~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~  205 (413)
T PHA02875        136 FSPLHLAVMMGDIKGIELLIDHKACLDI----------EDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAA  205 (413)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcCCCCCC----------CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchH
Confidence            8888888888888888888888777633          366788888888888888888888875             23


Q ss_pred             cccccccchHHHHHHHHHhhhhcCCCccc
Q psy2859         175 SLISHLPSVRKVVSLLSEKQMKAGPETNE  203 (534)
Q Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  203 (534)
                      ++.+...+..++++.|.+    .+.+.+.
T Consensus       206 l~~A~~~~~~~iv~~Ll~----~gad~n~  230 (413)
T PHA02875        206 LCYAIENNKIDIVRLFIK----RGADCNI  230 (413)
T ss_pred             HHHHHHcCCHHHHHHHHH----CCcCcch
Confidence            444666677778888854    4445443

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.92  E-value=3.6e-24  Score=226.09  Aligned_cols=179  Identities=24%  Similarity=0.285  Sum_probs=152.5

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH---------------------------------
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNK---------------------------------   53 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~---------------------------------   53 (534)
                      -+|||.||..|+.+.|..||. .|+++|.+|..|+||||+||..|+.                                 
T Consensus        38 ~tPLh~A~~~g~~e~vk~Ll~-~gadvn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~~ei  116 (477)
T PHA02878         38 FIPLHQAVEARNLDVVKSLLT-RGHNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRNVEI  116 (477)
T ss_pred             cchHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCCHHH
Confidence            457888888888888877775 5999999999999999999986543                                 


Q ss_pred             -------------------------------HHHHHHHHCCCCCCCCCCCC-CchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy2859          54 -------------------------------QICQLLLDHGADVNSGRHEH-GYSALHFAALSGKDDVCACLLSAGAKSY  101 (534)
Q Consensus        54 -------------------------------~iv~~Ll~~ga~vn~~~~~~-G~TpLh~A~~~g~~~iv~~Ll~~ga~~~  101 (534)
                                                     +++++|+++|+++|. .+.. |.||||+|+..|+.+++++|+++|++++
T Consensus       117 ~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gadin~-~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n  195 (477)
T PHA02878        117 FKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGADINM-KDRHKGNTALHYATENKDQRLTELLLSYGANVN  195 (477)
T ss_pred             HHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCCCCc-cCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC
Confidence                                           277888889999998 6777 9999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHh-cCchHHHHHHhh--------
Q psy2859         102 ATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQ-VNIHPVRVALNL--------  172 (534)
Q Consensus       102 ~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~--------  172 (534)
                      ..|..|.||||+|+..++.+++++|++.|++++.          .|..|.||||+|+.. ++.+++++|++.        
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~----------~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        196 IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDA----------RDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            9999999999999999999999999999999854          477899999999976 789999999976        


Q ss_pred             -----CCcccccccchHHHHHHHHHhhhhcCCCccc
Q psy2859         173 -----LPSLISHLPSVRKVVSLLSEKQMKAGPETNE  203 (534)
Q Consensus       173 -----~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  203 (534)
                           +|++.+  .+...++++|.+    .+.+++.
T Consensus       266 ~~~g~TpLh~A--~~~~~~v~~Ll~----~gadin~  295 (477)
T PHA02878        266 YILGLTALHSS--IKSERKLKLLLE----YGADINS  295 (477)
T ss_pred             CCCCCCHHHHH--ccCHHHHHHHHH----CCCCCCC
Confidence                 466666  344567888854    4455554

>KOG0508|consensus

Probab=99.92  E-value=3.5e-25  Score=214.13  Aligned_cols=179  Identities=21%  Similarity=0.270  Sum_probs=153.8

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHhCCCCCccC--------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLY--------DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG   74 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~--------d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G   74 (534)
                      ...+++|++.||+.|+.+.|..+|...++++...        .-.|-+||..|+..||+++|++|+++||+||. .....
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~-tT~TN  117 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVND-TTRTN  117 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCcccc-ccccC
Confidence            3456788889999999999988888777777653        23577899888999999999999999999998 66667


Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchH
Q psy2859          75 YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPL  154 (534)
Q Consensus        75 ~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L  154 (534)
                      .|||--||.-|+.++|++|+++|+|+++.|..|.|.||+|+..|+.+|+++|++.|+|+|.          .+..|+|+|
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~----------ks~kGNTAL  187 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNA----------KSYKGNTAL  187 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcch----------hcccCchHH
Confidence            7999999999999999999999999999999999999999999999999999999999854          367799999


Q ss_pred             HHHHHhcCchHHHHHHhh-----------CCcccccccchHHHHHHHHH
Q psy2859         155 HTFIMQVNIHPVRVALNL-----------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       155 ~~A~~~~~~~~v~~Ll~~-----------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      |.++..|+.+++++|+.+           +|++.+...++.++++.|..
T Consensus       188 H~caEsG~vdivq~Ll~~ga~i~~d~~GmtPL~~Aa~tG~~~iVe~L~~  236 (615)
T KOG0508|consen  188 HDCAESGSVDIVQLLLKHGAKIDVDGHGMTPLLLAAVTGHTDIVERLLQ  236 (615)
T ss_pred             HhhhhcccHHHHHHHHhCCceeeecCCCCchHHHHhhhcchHHHHHHhc
Confidence            999999999999999976           88888999999999888863

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=7.9e-24  Score=219.75  Aligned_cols=177  Identities=20%  Similarity=0.212  Sum_probs=159.2

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +...|+.|+..|+.+.+..||. .|+++|..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~iv~~Ll~-~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          2 DQVALCDAILFGELDIARRLLD-IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV-KYPDIESELHDAVEEG   79 (413)
T ss_pred             CchHHHHHHHhCCHHHHHHHHH-CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCcccHHHHHHHCC
Confidence            4567889999998888777665 5999999999999999999999999999999999999998 7889999999999999


Q ss_pred             CHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          86 KDDVCACLLSAGAKS-YATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~-~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      +.++|++|++.|+++ +..+..|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..|+.+
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~----------~~~~g~tpLh~A~~~~~~~  149 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDI----------PNTDKFSPLHLAVMMGDIK  149 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC----------CCCCCCCHHHHHHHcCCHH
Confidence            999999999999876 45567899999999999999999999999999854          3667999999999999999


Q ss_pred             HHHHHHhh------------CCcccccccchHHHHHHHHHhh
Q psy2859         165 PVRVALNL------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       165 ~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                      ++++|+++            +|++.+...+..++++.|.+.+
T Consensus       150 ~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~g  191 (413)
T PHA02875        150 GIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSG  191 (413)
T ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            99999976            6788899999999999996543

>KOG0508|consensus

Probab=99.91  E-value=1.3e-24  Score=210.31  Aligned_cols=156  Identities=26%  Similarity=0.264  Sum_probs=147.0

Q ss_pred             CCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      -+|.|+++||...+...|.++|.++|++||.......|||-.||.-|++++|++|+++|||++. .|..|.|-||+||.+
T Consensus        82 IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~I-anrhGhTcLmIa~yk  160 (615)
T KOG0508|consen   82 IEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEI-ANRHGHTCLMIACYK  160 (615)
T ss_pred             cCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcc-cccCCCeeEEeeecc
Confidence            4688899999888888888888888999999888888999999999999999999999999999 999999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      ||.+|+++|++.|+|+|.++..|.|+||.++..|+.+|+++|+.+|+.+..           |..|.|||..|...|+.+
T Consensus       161 Gh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-----------d~~GmtPL~~Aa~tG~~~  229 (615)
T KOG0508|consen  161 GHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-----------DGHGMTPLLLAAVTGHTD  229 (615)
T ss_pred             CchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-----------cCCCCchHHHHhhhcchH
Confidence            999999999999999999999999999999999999999999999998753           667999999999999999


Q ss_pred             HHHHHHhh
Q psy2859         165 PVRVALNL  172 (534)
Q Consensus       165 ~v~~Ll~~  172 (534)
                      +|++|+..
T Consensus       230 iVe~L~~~  237 (615)
T KOG0508|consen  230 IVERLLQC  237 (615)
T ss_pred             HHHHHhcC
Confidence            99999964

>PHA02946 ankyin-like protein; Provisional

Probab=99.91  E-value=3.4e-23  Score=214.93  Aligned_cols=194  Identities=12%  Similarity=0.082  Sum_probs=154.6

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG--NKQICQLLLDHGADVNSGRHEHGYSALHF   80 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~   80 (534)
                      .+.+|.++++||..|+.+.+ ++|.+.|++++..|..|+||||+|+..+  +.+++++|+++|+++|. .|.+|.||||+
T Consensus       137 ~d~~g~tpL~aa~~~~~~vv-~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~-~d~~G~TpLH~  214 (446)
T PHA02946        137 VDEEGCGPLLACTDPSERVF-KKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSK-PDHDGNTPLHI  214 (446)
T ss_pred             cCCCCCcHHHHHHCCChHHH-HHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcc-cCCCCCCHHHH
Confidence            35667777788877766544 5555669999999999999999988765  46899999999999998 89999999999


Q ss_pred             HHHcC--CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcH-HHHHHHHhhcCCceeeccCC----CCC-------CCCC
Q psy2859          81 AALSG--KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVV-AVINNYIAKSEVDYYIVPRG----LET-------TPKL  146 (534)
Q Consensus        81 A~~~g--~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~-~~i~~~L~~~~~~~~~~~~~----~~~-------~~~~  146 (534)
                      |+..|  +.+++++|++ |+++|.+|..|.||||+|+..+. .+++++|+..|++++.....    .+.       ....
T Consensus       215 Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g  293 (446)
T PHA02946        215 VCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKG  293 (446)
T ss_pred             HHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcC
Confidence            99986  7899999985 89999999999999999999866 58899999988754321100    000       0001


Q ss_pred             CCCCCchHHHHHHhcCchHHHHHHhh-----CCcccccccchHHHHHHHHHhhhhcCCCccc
Q psy2859         147 DPILAEPLHTFIMQVNIHPVRVALNL-----LPSLISHLPSVRKVVSLLSEKQMKAGPETNE  203 (534)
Q Consensus       147 ~~~g~t~L~~A~~~~~~~~v~~Ll~~-----~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  203 (534)
                      +..|.||||+|+..|+.++|++|++.     +|++.+...+..++++.|..    .+.+++.
T Consensus       294 ~~~~~TpLh~Aa~~g~~eivk~Ll~~~~~~~t~L~~A~~~~~~~~v~~Ll~----~ga~~n~  351 (446)
T PHA02946        294 KQYDSTDFKMAVEVGSIRCVKYLLDNDIICEDAMYYAVLSEYETMVDYLLF----NHFSVDS  351 (446)
T ss_pred             cccCCCHHHHHHHcCCHHHHHHHHHCCCccccHHHHHHHhCHHHHHHHHHH----CCCCCCC
Confidence            23578999999999999999999987     88999999999999999964    4455554

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.9e-23  Score=194.99  Aligned_cols=152  Identities=22%  Similarity=0.274  Sum_probs=133.2

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCC-CCCchHHHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG--NKQICQLLLDHGADVNSGRH-EHGYSALHFAA   82 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~ga~vn~~~~-~~G~TpLh~A~   82 (534)
                      ..+||+.|+..|+.+.|+.|+..    +|..|..|.||||+|+..+  +.+++++|+++|+++|. .+ ..|.||||+|+
T Consensus        21 ~~~pL~~A~~~~~~~~vk~Li~~----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~-~~~~~g~TpLh~a~   95 (209)
T PHA02859         21 YCNPLFYYVEKDDIEGVKKWIKF----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF-KTRDNNLSALHHYL   95 (209)
T ss_pred             cCcHHHHHHHhCcHHHHHHHHHh----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc-cCCCCCCCHHHHHH
Confidence            45788899999999999888753    5677899999999999864  89999999999999998 55 58999999987


Q ss_pred             Hc---CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHh--cHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHH-
Q psy2859          83 LS---GKDDVCACLLSAGAKSYATNSVGRTASQMAAFV--VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHT-  156 (534)
Q Consensus        83 ~~---g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~--~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~-  156 (534)
                      ..   ++.+++++|+++|+++|.+|..|.||||+|+..  ++.+++++|+..|++++.          .|..|.||||. 
T Consensus        96 ~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~----------~d~~g~t~Lh~~  165 (209)
T PHA02859         96 SFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLN----------KDFDNNNILYSY  165 (209)
T ss_pred             HhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccc----------ccCCCCcHHHHH
Confidence            64   479999999999999999999999999999864  678999999999999854          47789999996 


Q ss_pred             HHHhcCchHHHHHHhh
Q psy2859         157 FIMQVNIHPVRVALNL  172 (534)
Q Consensus       157 A~~~~~~~~v~~Ll~~  172 (534)
                      |+..++.+++++|++.
T Consensus       166 a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        166 ILFHSDKKIFDFLTSL  181 (209)
T ss_pred             HHhcCCHHHHHHHHHc
Confidence            5667899999999987

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.8e-23  Score=221.44  Aligned_cols=178  Identities=25%  Similarity=0.271  Sum_probs=121.5

Q ss_pred             HHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC--CHHH
Q psy2859          14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAA--YKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG--KDDV   89 (534)
Q Consensus        14 a~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa--~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g--~~~i   89 (534)
                      |..++...+.++|.+.|++++..|..|.||||+|+  ..|+.+++++|+++|++++. .+..|.||||+|+..|  +.++
T Consensus        80 a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~i  158 (480)
T PHA03100         80 YNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI-KNSDGENLLHLYLESNKIDLKI  158 (480)
T ss_pred             HHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCChHHH
Confidence            44444444445555557777666666777777777  66777777777777777766 6666777777777776  6777


Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCC-----------------------------
Q psy2859          90 CACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGL-----------------------------  140 (534)
Q Consensus        90 v~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~-----------------------------  140 (534)
                      +++|+++|++++.++..|.||||+|+..|..+++++|++.|++++......                             
T Consensus       159 v~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~  238 (480)
T PHA03100        159 LKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS  238 (480)
T ss_pred             HHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH
Confidence            777777777776666667777777777776677777777666665432211                             


Q ss_pred             --CCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         141 --ETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       141 --~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                        ...+..|..|.||||+|+..|+.+++++|++.            +|++.+...+...+++.|.+
T Consensus       239 ~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~  304 (480)
T PHA03100        239 YGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLN  304 (480)
T ss_pred             cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence              00133467789999999999999999999876            56777777777888888854

>PHA02946 ankyin-like protein; Provisional

Probab=99.91  E-value=3e-23  Score=215.29  Aligned_cols=174  Identities=20%  Similarity=0.155  Sum_probs=111.8

Q ss_pred             CCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC--HHHHHHHH
Q psy2859          17 NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK--DDVCACLL   94 (534)
Q Consensus        17 g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~--~~iv~~Ll   94 (534)
                      +....+.++|+++|+++|.+|..|+||||+|+..|+.++|++||++||++|. .|..|.||||+|+..++  .+++++|+
T Consensus        49 ~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~-~d~~g~TpLh~A~~~~~~~~e~v~lLl  127 (446)
T PHA02946         49 GLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA-CDKQHKTPLYYLSGTDDEVIERINLLV  127 (446)
T ss_pred             CCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCchHHHHHHHH
Confidence            3344555666666778877777788888888888888888888888888777 67777888887776553  67777777


Q ss_pred             hcCCCCCC-CCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCC------------------------C-CCCCCCC
Q psy2859          95 SAGAKSYA-TNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGL------------------------E-TTPKLDP  148 (534)
Q Consensus        95 ~~ga~~~~-~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~------------------------~-~~~~~~~  148 (534)
                      ++|++++. .+..|.|||| |+..+..+++++|+..|++++..+...                        + .....|.
T Consensus       128 ~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~  206 (446)
T PHA02946        128 QYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDH  206 (446)
T ss_pred             HcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCC
Confidence            77777764 4667777775 444556666666666666654432110                        0 0022355


Q ss_pred             CCCchHHHHHHhc--CchHHHHHHhh-----------CCcccccccch-HHHHHHHHH
Q psy2859         149 ILAEPLHTFIMQV--NIHPVRVALNL-----------LPSLISHLPSV-RKVVSLLSE  192 (534)
Q Consensus       149 ~g~t~L~~A~~~~--~~~~v~~Ll~~-----------~p~~~~~~~~~-~~~~~~l~~  192 (534)
                      .|.||||+|+..+  +.+++++|++.           +|++++...+. ..+++.|..
T Consensus       207 ~G~TpLH~Aa~~~~~~~~iv~lLl~gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~  264 (446)
T PHA02946        207 DGNTPLHIVCSKTVKNVDIINLLLPSTDVNKQNKFGDSPLTLLIKTLSPAHLINKLLS  264 (446)
T ss_pred             CCCCHHHHHHHcCCCcHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHh
Confidence            6777777777764  56677766632           56666555444 345555543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=5e-23  Score=214.85  Aligned_cols=156  Identities=20%  Similarity=0.207  Sum_probs=131.1

Q ss_pred             CCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC--------------------
Q psy2859           5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA--------------------   64 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga--------------------   64 (534)
                      .+.++|+.|+..|+.+.|..| .+.|+++|..+..|.||||+|+..|+.+++++|+++|+                    
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~L-l~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~  112 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELF-IKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILD  112 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHH-HHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHH
Confidence            344666667777777666554 45699999989999999999999999999888887765                    


Q ss_pred             ---CCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCC
Q psy2859          65 ---DVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLE  141 (534)
Q Consensus        65 ---~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~  141 (534)
                         +++. .+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..+..+++++|++.|++++.      
T Consensus       113 ~g~d~n~-~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~------  185 (434)
T PHA02874        113 CGIDVNI-KDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV------  185 (434)
T ss_pred             CcCCCCC-CCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC------
Confidence               4555 677899999999999999999999999999999999999999999999999999999999988743      


Q ss_pred             CCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         142 TTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       142 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                          .+..|.||||+|+..|+.+++++|++.
T Consensus       186 ----~~~~g~tpL~~A~~~g~~~iv~~Ll~~  212 (434)
T PHA02874        186 ----KDNNGESPLHNAAEYGDYACIKLLIDH  212 (434)
T ss_pred             ----CCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence                366789999999999999999999876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=220.14  Aligned_cols=188  Identities=16%  Similarity=0.145  Sum_probs=139.5

Q ss_pred             CCCchhHHHHHHhC-----CHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCCc
Q psy2859           4 PMEGNEIFDFISKN-----DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG---NKQICQLLLDHGADVNSGRHEHGY   75 (534)
Q Consensus         4 ~~~~~~l~~aa~~g-----~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g---~~~iv~~Ll~~ga~vn~~~~~~G~   75 (534)
                      +..|.++++.+..+     +...+.++|.++|+++|..|..|.||||+|+..+   +.+++++|+++||+++. .|..|.
T Consensus        68 d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~  146 (489)
T PHA02798         68 DNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTL-LDKDGF  146 (489)
T ss_pred             CCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccc-cCCCCC
Confidence            34454555444432     4456667777778888888888888888888765   67888888888888887 788888


Q ss_pred             hHHHHHHHcCC---HHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHh----cHHHHHHHHhhcCCceeeccCCCC------
Q psy2859          76 SALHFAALSGK---DDVCACLLSAGAKSYATN-SVGRTASQMAAFV----VVAVINNYIAKSEVDYYIVPRGLE------  141 (534)
Q Consensus        76 TpLh~A~~~g~---~~iv~~Ll~~ga~~~~~~-~~G~TpL~~A~~~----~~~~i~~~L~~~~~~~~~~~~~~~------  141 (534)
                      ||||+|+..|+   .+++++|+++|++++..+ ..|.||||.++..    +..+++++|+++|++++..+....      
T Consensus       147 tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~  226 (489)
T PHA02798        147 TMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEY  226 (489)
T ss_pred             cHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHH
Confidence            88888888777   788888888888887764 4677888877664    357788888888877765322110      


Q ss_pred             -----------------------CCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHH
Q psy2859         142 -----------------------TTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKV  186 (534)
Q Consensus       142 -----------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~  186 (534)
                                             ..+..|..|.||||+|+..++.+++++|++.            +|++.+...+...+
T Consensus       227 l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~i  306 (489)
T PHA02798        227 LNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFI  306 (489)
T ss_pred             HHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHH
Confidence                                   1233567799999999999999999999986            67888888888888


Q ss_pred             HHHHHH
Q psy2859         187 VSLLSE  192 (534)
Q Consensus       187 ~~~l~~  192 (534)
                      ++.+.+
T Consensus       307 v~~lL~  312 (489)
T PHA02798        307 FNSILN  312 (489)
T ss_pred             HHHHHc
Confidence            888753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=7.6e-23  Score=219.03  Aligned_cols=128  Identities=16%  Similarity=0.214  Sum_probs=79.0

Q ss_pred             hhHHHHHHhCCH-HHHHHHHHhCCCCCccCCCCCCcHHHHH-------------------------------------HH
Q psy2859           8 NEIFDFISKNDI-DNVQKLLSEHKLRVDLYDEHGMTPLQHA-------------------------------------AY   49 (534)
Q Consensus         8 ~~l~~aa~~g~~-~~v~~lL~~~g~~~n~~d~~g~TpLh~A-------------------------------------a~   49 (534)
                      +|||.|+..|+. ..+.++|+++|+++|.+|..|+||||+|                                     +.
T Consensus       214 TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~  293 (764)
T PHA02716        214 TPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLAR  293 (764)
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHH
Confidence            444444445442 3455555556777777666677777653                                     23


Q ss_pred             cCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHh----------
Q psy2859          50 KGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL--SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV----------  117 (534)
Q Consensus        50 ~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~--~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~----------  117 (534)
                      .|+.++|++|+++|+++|. .|..|.||||+|+.  .++.++|++|+++|++++.+|..|+||||+|+..          
T Consensus       294 ~g~leiVklLLe~GAdIN~-kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~  372 (764)
T PHA02716        294 NIDISVVYSFLQPGVKLHY-KDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPE  372 (764)
T ss_pred             cCCHHHHHHHHhCCCceec-cCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhcccccc
Confidence            4556666666667777666 56667777776553  3456677777777777777777777777766531          


Q ss_pred             ----cHHHHHHHHhhcCCceeec
Q psy2859         118 ----VVAVINNYIAKSEVDYYIV  136 (534)
Q Consensus       118 ----~~~~i~~~L~~~~~~~~~~  136 (534)
                          ++.+++++|++.|++++..
T Consensus       373 ~~~~~~~eVVklLL~~GADIn~k  395 (764)
T PHA02716        373 TDNDIRLDVIQCLISLGADITAV  395 (764)
T ss_pred             ccccChHHHHHHHHHCCCCCCCc
Confidence                4556666677666665543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=4.2e-23  Score=218.66  Aligned_cols=186  Identities=22%  Similarity=0.253  Sum_probs=143.5

Q ss_pred             chhHHHHHHhC-----CHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCC-CCCCCCCCchH
Q psy2859           7 GNEIFDFISKN-----DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYK---GNKQICQLLLDHGADV-NSGRHEHGYSA   77 (534)
Q Consensus         7 ~~~l~~aa~~g-----~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~v-n~~~~~~G~Tp   77 (534)
                      .+|++.|+..+     +...+.++|.++|+++|.+|..|.||||.|+..   |+.++|++|+++|||+ +. .+..|+||
T Consensus        70 ~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~-~d~~g~tp  148 (494)
T PHA02989         70 ETPLCAVLRNREITSNKIKKIVKLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDV-KNSRGYNL  148 (494)
T ss_pred             CCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccc-cCCCCCCH
Confidence            34555444433     235677777777888888888888888877765   5788888888888888 56 78888888


Q ss_pred             HHHHHHc--CCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHh----cHHHHHHHHhhcCCceeeccCCCC---------
Q psy2859          78 LHFAALS--GKDDVCACLLSAGAKSYA-TNSVGRTASQMAAFV----VVAVINNYIAKSEVDYYIVPRGLE---------  141 (534)
Q Consensus        78 Lh~A~~~--g~~~iv~~Ll~~ga~~~~-~~~~G~TpL~~A~~~----~~~~i~~~L~~~~~~~~~~~~~~~---------  141 (534)
                      ||+|+..  ++.++|++|+++|++++. .+..|.||||+|+..    ++.+++++|++.|++++..+.+..         
T Consensus       149 Lh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~  228 (494)
T PHA02989        149 LHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDN  228 (494)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHh
Confidence            8888654  578888888888888887 577888888888765    377888888888888876553211         


Q ss_pred             -------------------CCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHH
Q psy2859         142 -------------------TTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLL  190 (534)
Q Consensus       142 -------------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l  190 (534)
                                         ..+..|..|.||||+|+..|+.++|++|++.            +|++.+...+...+++.|
T Consensus       229 ~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~L  308 (494)
T PHA02989        229 NKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRI  308 (494)
T ss_pred             chhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence                               1134567799999999999999999999977            678888888888888888


Q ss_pred             HHh
Q psy2859         191 SEK  193 (534)
Q Consensus       191 ~~~  193 (534)
                      .+.
T Consensus       309 L~~  311 (494)
T PHA02989        309 LQL  311 (494)
T ss_pred             Hhc
Confidence            653

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=5.6e-23  Score=214.47  Aligned_cols=176  Identities=19%  Similarity=0.194  Sum_probs=160.6

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD   87 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~   87 (534)
                      .-+..|+..|+.+.|+.++...+..+|..+..|.||||.|+..|+.++|++|+++|+++|. .+..|.||||+|+..|+.
T Consensus         3 ~~l~~ai~~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~-~~~~~~t~L~~A~~~~~~   81 (434)
T PHA02874          3 QDLRMCIYSGDIEAIEKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINH-INTKIPHPLLTAIKIGAH   81 (434)
T ss_pred             HHHHHHHhcCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCH
Confidence            4578899999999999999988888999999999999999999999999999999999998 899999999999999999


Q ss_pred             HHHHHHHhcCC-----------------------CCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCC
Q psy2859          88 DVCACLLSAGA-----------------------KSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTP  144 (534)
Q Consensus        88 ~iv~~Ll~~ga-----------------------~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~  144 (534)
                      +++++|+++|+                       +++.++..|.||||+|+..|..+++++|++.|++++.         
T Consensus        82 ~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~---------  152 (434)
T PHA02874         82 DIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI---------  152 (434)
T ss_pred             HHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC---------
Confidence            99999988765                       4667888999999999999999999999999999854         


Q ss_pred             CCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHHhh
Q psy2859         145 KLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       145 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                       .+..|.||||+|+..++.+++++|++.            +|++.+...+..++++.|.+.+
T Consensus       153 -~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g  213 (434)
T PHA02874        153 -EDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG  213 (434)
T ss_pred             -cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence             467899999999999999999999976            6788888899999999997543

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.90  E-value=4e-23  Score=221.14  Aligned_cols=179  Identities=20%  Similarity=0.240  Sum_probs=146.0

Q ss_pred             CCCchhHHHHHHhC--CHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC--HHHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2859           4 PMEGNEIFDFISKN--DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN--KQICQLLLDHGADVNSGRHEHGYSALH   79 (534)
Q Consensus         4 ~~~~~~l~~aa~~g--~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~--~~iv~~Ll~~ga~vn~~~~~~G~TpLh   79 (534)
                      +..|.+++|+|...  +...+.++|.++|+++|..|..|.||||+|+..|+  .++|++||++|||+|. ++..|.||||
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~-kD~~G~TPLh  252 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDM-KCVNGMSPIM  252 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCC-CCCCCCCHHH
Confidence            44566666665422  23456667777799999999999999999999995  5899999999999999 8999999999


Q ss_pred             HH-------------------------------------HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHh--cHH
Q psy2859          80 FA-------------------------------------ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV--VVA  120 (534)
Q Consensus        80 ~A-------------------------------------~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~--~~~  120 (534)
                      +|                                     +..|+.++|++|++.|++++.+|..|+||||+|+..  +..
T Consensus       253 ~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~  332 (764)
T PHA02716        253 TYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNIST  332 (764)
T ss_pred             HHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCc
Confidence            75                                     445788999999999999999999999999998754  578


Q ss_pred             HHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHH--------------hcCchHHHHHHhh------------CC
Q psy2859         121 VINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIM--------------QVNIHPVRVALNL------------LP  174 (534)
Q Consensus       121 ~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--------------~~~~~~v~~Ll~~------------~p  174 (534)
                      +++++|++.|++++.          .|..|.||||+|+.              .++.++|++|++.            +|
T Consensus       333 eIVklLLe~GADIN~----------kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TP  402 (764)
T PHA02716        333 DIIKLLHEYGNDLNE----------PDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTP  402 (764)
T ss_pred             hHHHHHHHcCCCCcc----------CCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCCh
Confidence            999999999999854          37789999999875              3688999999987            56


Q ss_pred             ccc----ccccchHHHHHHHHHh
Q psy2859         175 SLI----SHLPSVRKVVSLLSEK  193 (534)
Q Consensus       175 ~~~----~~~~~~~~~~~~l~~~  193 (534)
                      ++.    +...+..+++++|.+.
T Consensus       403 Lh~y~~~a~n~~~~dIvklLis~  425 (764)
T PHA02716        403 LTSYICTAQNYMYYDIIDCLISD  425 (764)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhC
Confidence            652    2234556788888654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.90  E-value=7e-23  Score=217.05  Aligned_cols=186  Identities=22%  Similarity=0.199  Sum_probs=159.0

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHH-----HHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHH
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQH-----AAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA   81 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~-----Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A   81 (534)
                      .+++|.|+..|+.+.|+.|| +.|++++..+..|.||||+     |+..|+.+++++|+++|++++. .+..|.||||+|
T Consensus        36 ~t~L~~A~~~~~~~ivk~Ll-~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~-~d~~g~tpL~~A  113 (480)
T PHA03100         36 VLPLYLAKEARNIDVVKILL-DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNA-PDNNGITPLLYA  113 (480)
T ss_pred             chhhhhhhccCCHHHHHHHH-HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCC-CCCCCCchhhHH
Confidence            35566666666666555555 5599999999999999999     9999999999999999999998 899999999999


Q ss_pred             H--HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhc--HHHHHHHHhhcCCceeeccCCCC----------------
Q psy2859          82 A--LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVV--VAVINNYIAKSEVDYYIVPRGLE----------------  141 (534)
Q Consensus        82 ~--~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~--~~~i~~~L~~~~~~~~~~~~~~~----------------  141 (534)
                      +  ..|+.+++++|+++|++++..+..|.||||+|+..+  ..+++++|++.|++++..+....                
T Consensus       114 ~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~  193 (480)
T PHA03100        114 ISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIK  193 (480)
T ss_pred             HhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHH
Confidence            9  999999999999999999999999999999999999  99999999999999887654211                


Q ss_pred             ------C-CCCCCCCC------CchHHHHHHhcC--chHHHHHHhh------------CCcccccccchHHHHHHHHHhh
Q psy2859         142 ------T-TPKLDPIL------AEPLHTFIMQVN--IHPVRVALNL------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       142 ------~-~~~~~~~g------~t~L~~A~~~~~--~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                            . ....+..|      .||||.|+..++  .+++++|++.            +|++.+...+..++++.|.+.+
T Consensus       194 ~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~g  273 (480)
T PHA03100        194 FLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLG  273 (480)
T ss_pred             HHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                  1 12223445      889999999999  9999999987            6888888888999999996543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.89  E-value=1.7e-22  Score=213.52  Aligned_cols=185  Identities=21%  Similarity=0.253  Sum_probs=137.7

Q ss_pred             chhHHHHHHhC--CHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCchHHHHHH-
Q psy2859           7 GNEIFDFISKN--DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG-NKQICQLLLDHGADVNSGRHEHGYSALHFAA-   82 (534)
Q Consensus         7 ~~~l~~aa~~g--~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g-~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~-   82 (534)
                      .++||.|+..+  +...+.++|.+.|+++|.+|..|.||||+|+..| +.+++++|+++|+++|. .+..|.||||+|+ 
T Consensus        48 ~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~-~~~~g~tpLh~a~~  126 (471)
T PHA03095         48 KTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA-KDKVGRTPLHVYLS  126 (471)
T ss_pred             CCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhh
Confidence            34455555554  3667777777789999999999999999999999 58999999999999998 8889999999999 


Q ss_pred             -HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhc--HHHHHHHHhhcCCceeeccCCCC------------------
Q psy2859          83 -LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVV--VAVINNYIAKSEVDYYIVPRGLE------------------  141 (534)
Q Consensus        83 -~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~--~~~i~~~L~~~~~~~~~~~~~~~------------------  141 (534)
                       ..++.+++++|+++|++++..|..|.||||+|+..+  ..+++++|++.|++++..+....                  
T Consensus       127 ~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~  206 (471)
T PHA03095        127 GFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVR  206 (471)
T ss_pred             CCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHH
Confidence             556788999999999999999999999999888764  56788888888887765422110                  


Q ss_pred             -------CCCCCCCCCCchHHHHHHhcCc--hHHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         142 -------TTPKLDPILAEPLHTFIMQVNI--HPVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       142 -------~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                             .....|..|.||||+|+..++.  .++..|++.            +|++.+...+...+++.|.+
T Consensus       207 ~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~  278 (471)
T PHA03095        207 ELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIA  278 (471)
T ss_pred             HHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence                   0122355567777777766654  345555543            56777777777777777754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.89  E-value=2.7e-22  Score=187.24  Aligned_cols=147  Identities=14%  Similarity=0.129  Sum_probs=123.0

Q ss_pred             CCCchhHHH-HHHhC-CHHHHHHHHHhCCCCCccCC-CCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCchH
Q psy2859           4 PMEGNEIFD-FISKN-DIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYK---GNKQICQLLLDHGADVNSGRHEHGYSA   77 (534)
Q Consensus         4 ~~~~~~l~~-aa~~g-~~~~v~~lL~~~g~~~n~~d-~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~~~~~G~Tp   77 (534)
                      +..|.++++ |+..+ +...+.++|.+.|+++|.++ ..|+||||+|+..   ++.+++++|+++|+++|. .|..|.||
T Consensus        48 ~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~-~d~~G~Tp  126 (209)
T PHA02859         48 NDLYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITE-EDEDGKNL  126 (209)
T ss_pred             CccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCC-cCCCCCCH
Confidence            344544444 54443 24566677777899999997 5899999998864   479999999999999999 89999999


Q ss_pred             HHHHHH--cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH-HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchH
Q psy2859          78 LHFAAL--SGKDDVCACLLSAGAKSYATNSVGRTASQMA-AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPL  154 (534)
Q Consensus        78 Lh~A~~--~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A-~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L  154 (534)
                      ||+|+.  .++.+++++|++.|++++.+|..|.||||.+ +..+..+++++|++.|++++.          .+..|.|||
T Consensus       127 Lh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~----------~d~~g~tpl  196 (209)
T PHA02859        127 LHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINE----------TNKSGYNCY  196 (209)
T ss_pred             HHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCC----------CCCCCCCHH
Confidence            999986  4689999999999999999999999999964 556889999999999999854          467899999


Q ss_pred             HHHHHhc
Q psy2859         155 HTFIMQV  161 (534)
Q Consensus       155 ~~A~~~~  161 (534)
                      ++|+.++
T Consensus       197 ~la~~~~  203 (209)
T PHA02859        197 DLIKFRN  203 (209)
T ss_pred             HHHhhhh
Confidence            9998763

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.88  E-value=5e-22  Score=209.81  Aligned_cols=139  Identities=24%  Similarity=0.265  Sum_probs=73.6

Q ss_pred             HHHHHHhCCCCCccCCCC-CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC
Q psy2859          22 VQKLLSEHKLRVDLYDEH-GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKS  100 (534)
Q Consensus        22 v~~lL~~~g~~~n~~d~~-g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~  100 (534)
                      +.++|.++|+++|..+.. |.||||+|+..|+.+++++|+++|+++|. .+..|.||||+|+..|+.+++++|++.|+++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~i  227 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI-PDKTNNSPLHHAVKHYNKPIVHILLENGAST  227 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHcCCCC
Confidence            444444455555555554 55555555555555555555555555555 4555555555555555555555555555555


Q ss_pred             CCCCCCCCCHHHHHHHh-cHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         101 YATNSVGRTASQMAAFV-VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       101 ~~~~~~G~TpL~~A~~~-~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +.+|..|.||||+|+.. +..+++++|++.|++++...         +..|.||||+|  .++.+++++|+++
T Consensus       228 n~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~---------~~~g~TpLh~A--~~~~~~v~~Ll~~  289 (477)
T PHA02878        228 DARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKS---------YILGLTALHSS--IKSERKLKLLLEY  289 (477)
T ss_pred             CCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccC---------CCCCCCHHHHH--ccCHHHHHHHHHC
Confidence            55555555555555543 34555555555555543221         12355555555  3344555555543

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.88  E-value=6.8e-22  Score=209.47  Aligned_cols=161  Identities=20%  Similarity=0.199  Sum_probs=135.0

Q ss_pred             CCCchhHHH-HHHhC--CHHHHHHHHHhCCCCC-ccCCCCCCcHHHHHHHc--CCHHHHHHHHHCCCCCCCCCCCCCchH
Q psy2859           4 PMEGNEIFD-FISKN--DIDNVQKLLSEHKLRV-DLYDEHGMTPLQHAAYK--GNKQICQLLLDHGADVNSGRHEHGYSA   77 (534)
Q Consensus         4 ~~~~~~l~~-aa~~g--~~~~v~~lL~~~g~~~-n~~d~~g~TpLh~Aa~~--g~~~iv~~Ll~~ga~vn~~~~~~G~Tp   77 (534)
                      +..|.++++ |+..+  +..++.++|+++|+++ +..|..|+||||+|+..  ++.++|++|+++|++++...+..|.||
T Consensus       105 d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tp  184 (494)
T PHA02989        105 TFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTP  184 (494)
T ss_pred             CCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCCh
Confidence            344555544 44442  3456667777779999 78999999999998764  689999999999999997557899999


Q ss_pred             HHHHHHcC----CHHHHHHHHhcCCCCCC--------------------------------------CCCCCCCHHHHHH
Q psy2859          78 LHFAALSG----KDDVCACLLSAGAKSYA--------------------------------------TNSVGRTASQMAA  115 (534)
Q Consensus        78 Lh~A~~~g----~~~iv~~Ll~~ga~~~~--------------------------------------~~~~G~TpL~~A~  115 (534)
                      ||+|+..+    +.++|++|+++|++++.                                      +|..|+||||+|+
T Consensus       185 L~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa  264 (494)
T PHA02989        185 MNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISA  264 (494)
T ss_pred             HHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHH
Confidence            99998764    89999999999887654                                      4456999999999


Q ss_pred             HhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhhCC
Q psy2859         116 FVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLP  174 (534)
Q Consensus       116 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~p  174 (534)
                      ..++.+++++|++.|++++..          +..|.||||+|+..++.++|+.|++..|
T Consensus       265 ~~~~~~~v~~LL~~Gadin~~----------d~~G~TpL~~A~~~~~~~iv~~LL~~~p  313 (494)
T PHA02989        265 KVDNYEAFNYLLKLGDDIYNV----------SKDGDTVLTYAIKHGNIDMLNRILQLKP  313 (494)
T ss_pred             HhcCHHHHHHHHHcCCCcccc----------CCCCCCHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999999999999998543          7789999999999999999999999866

>PHA02798 ankyrin-like protein; Provisional

Probab=99.87  E-value=1.5e-21  Score=206.66  Aligned_cols=161  Identities=19%  Similarity=0.189  Sum_probs=136.8

Q ss_pred             CCCchhHHHHHHh-C--CHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC---HHHHHHHHHCCCCCCCCCCCCCchH
Q psy2859           4 PMEGNEIFDFISK-N--DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN---KQICQLLLDHGADVNSGRHEHGYSA   77 (534)
Q Consensus         4 ~~~~~~l~~aa~~-g--~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~---~~iv~~Ll~~ga~vn~~~~~~G~Tp   77 (534)
                      +..|.|++|.|.. +  +...+.++|.++|+++|..|..|.||||+|+..|+   .+++++|+++|+++|...+..|.||
T Consensus       106 d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~  185 (489)
T PHA02798        106 NSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDT  185 (489)
T ss_pred             CCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcH
Confidence            4456555555544 4  35677777778899999999999999999999998   9999999999999998445689999


Q ss_pred             HHHHHHc----CCHHHHHHHHhcCCCC---------------------------------------CCCCCCCCCHHHHH
Q psy2859          78 LHFAALS----GKDDVCACLLSAGAKS---------------------------------------YATNSVGRTASQMA  114 (534)
Q Consensus        78 Lh~A~~~----g~~~iv~~Ll~~ga~~---------------------------------------~~~~~~G~TpL~~A  114 (534)
                      ||.++..    ++.+++++|+++|+++                                       |.+|..|+||||+|
T Consensus       186 Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A  265 (489)
T PHA02798        186 LHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYS  265 (489)
T ss_pred             HHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHH
Confidence            9998764    4788999998887644                                       44677899999999


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhhCC
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLP  174 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~p  174 (534)
                      +..+..+++++|++.|+|++..          +..|.||||.|+..++.++++.|++..|
T Consensus       266 ~~~~~~~~v~~LL~~GAdin~~----------d~~G~TpL~~A~~~~~~~iv~~lL~~~~  315 (489)
T PHA02798        266 VSHNNRKIFEYLLQLGGDINII----------TELGNTCLFTAFENESKFIFNSILNKKP  315 (489)
T ss_pred             HHcCcHHHHHHHHHcCCccccc----------CCCCCcHHHHHHHcCcHHHHHHHHccCC
Confidence            9999999999999999998554          7789999999999999999999998855

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.87  E-value=1.9e-21  Score=214.22  Aligned_cols=176  Identities=22%  Similarity=0.225  Sum_probs=139.4

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC-CHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG-NKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g-~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      +.++||.|+..++...+..+|.+.|+++|..|..|.||||+|+..| +.+++++|+..|++++. .+..|.||||+|+..
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~-~d~~g~TpLh~A~~~  351 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQASTL  351 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCC-cccCCCcHHHHHHHh
Confidence            4577788888888888888888889999999999999999999998 58999999999999998 889999999999885


Q ss_pred             -CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCc
Q psy2859          85 -GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNI  163 (534)
Q Consensus        85 -g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  163 (534)
                       ++.+++++|++.|+++|.+|..|.||||+|+..++.+++++|++.|++++..          +..|.||||+|+..++.
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~----------~~~g~T~Lh~A~~~~~~  421 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEAL----------SQKIGTALHFALCGTNP  421 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcccc----------CCCCCchHHHHHHcCCH
Confidence             4688899999999999999999999999999999999999999999987543          44556666666655443


Q ss_pred             -hHHHHHHhh------------CCcccccccc-hHHHHHHHHH
Q psy2859         164 -HPVRVALNL------------LPSLISHLPS-VRKVVSLLSE  192 (534)
Q Consensus       164 -~~v~~Ll~~------------~p~~~~~~~~-~~~~~~~l~~  192 (534)
                       .++++|++.            +|++.+...+ ...++++|.+
T Consensus       422 ~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~  464 (682)
T PHA02876        422 YMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLD  464 (682)
T ss_pred             HHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHH
Confidence             345555543            4555555443 3456666643

>PHA02795 ankyrin-like protein; Provisional

Probab=99.87  E-value=2.3e-21  Score=194.84  Aligned_cols=156  Identities=8%  Similarity=0.039  Sum_probs=131.4

Q ss_pred             chhHHHHHH-hCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC-----CCCCchHHHH
Q psy2859           7 GNEIFDFIS-KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR-----HEHGYSALHF   80 (534)
Q Consensus         7 ~~~l~~aa~-~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~-----~~~G~TpLh~   80 (534)
                      .++||.++. .++..++.++|..+|+++|..  .+.||||.|+..|+.++|++|+.+|++.+-..     +..|.|++|.
T Consensus       117 ~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~  194 (437)
T PHA02795        117 QDLLLYYLSNAYVEIDIVDFMVDHGAVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFL  194 (437)
T ss_pred             cHHHHHHHHhcCCCHHHHHHHHHCCCCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHH
Confidence            344444544 145666666677779999985  45899999999999999999999998543212     1358899999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHh
Q psy2859          81 AALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQ  160 (534)
Q Consensus        81 A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  160 (534)
                      |+..++.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|++.|++++.          .+..|.||||+|+..
T Consensus       195 a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~----------~d~~G~TpLh~Aa~~  264 (437)
T PHA02795        195 VDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA----------VMSNGYTCLDVAVDR  264 (437)
T ss_pred             HHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999854          477899999999999


Q ss_pred             cC--------chHHHHHHhhCC
Q psy2859         161 VN--------IHPVRVALNLLP  174 (534)
Q Consensus       161 ~~--------~~~v~~Ll~~~p  174 (534)
                      |+        .+++++|++..+
T Consensus       265 g~~~~~~~~~~eIvelLL~~ga  286 (437)
T PHA02795        265 GSVIARRETHLKILEILLREPL  286 (437)
T ss_pred             CCcccccccHHHHHHHHHhCCC
Confidence            85        589999998743

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.87  E-value=2.8e-21  Score=215.95  Aligned_cols=153  Identities=22%  Similarity=0.205  Sum_probs=139.9

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      ...+++.||..|+.+.+..+|. .|+++|..|..|.||||+||..|+.+++++|+++|+++|. .|.+|+||||+|+..|
T Consensus       525 ~~~~L~~Aa~~g~~~~l~~Ll~-~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~-~d~~G~TpL~~A~~~g  602 (823)
T PLN03192        525 MASNLLTVASTGNAALLEELLK-AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNAISAK  602 (823)
T ss_pred             chhHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC-cCCCCCCHHHHHHHhC
Confidence            3578999999999887777665 5999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|++.++..+.  ..|.++||.|+..|+.+++++|+++|++++.          .|..|.||||+|+..|+.++
T Consensus       603 ~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~----------~d~~G~TpLh~A~~~g~~~i  670 (823)
T PLN03192        603 HHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDS----------EDHQGATALQVAMAEDHVDM  670 (823)
T ss_pred             CHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHHCCcHHH
Confidence            99999999998876553  4577999999999999999999999999854          47789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|++.
T Consensus       671 v~~Ll~~  677 (823)
T PLN03192        671 VRLLIMN  677 (823)
T ss_pred             HHHHHHc
Confidence            9999987

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.87  E-value=2.6e-21  Score=173.87  Aligned_cols=131  Identities=21%  Similarity=0.223  Sum_probs=118.5

Q ss_pred             CCchhHHHHHHhCCHHHHHH---HHHhCCCCCccCCCCCCcHHHHHHHcCCHH---HHHHHHHCCCCCCCCCC-CCCchH
Q psy2859           5 MEGNEIFDFISKNDIDNVQK---LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQ---ICQLLLDHGADVNSGRH-EHGYSA   77 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~---lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~---iv~~Ll~~ga~vn~~~~-~~G~Tp   77 (534)
                      .+++++|+||..|+...+.+   +|.+.|++++.+|..|+||||+|+..|+.+   ++++|+++|+++|. ++ ..|.||
T Consensus        19 ~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~-~d~~~g~Tp   97 (166)
T PHA02743         19 DEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA-RELGTGNTL   97 (166)
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC-CCCCCCCcH
Confidence            46678999999999976554   566789999999999999999999998865   48999999999999 66 589999


Q ss_pred             HHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeec
Q psy2859          78 LHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIV  136 (534)
Q Consensus        78 Lh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~  136 (534)
                      ||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..++.+++++|+.+|++++..
T Consensus        98 Lh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~  157 (166)
T PHA02743         98 LHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDP  157 (166)
T ss_pred             HHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCc
Confidence            999999999999999995 79999999999999999999999999999999999998654

>KOG0510|consensus

Probab=99.87  E-value=4.3e-21  Score=197.35  Aligned_cols=202  Identities=19%  Similarity=0.144  Sum_probs=163.8

Q ss_pred             CCCch-hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHH-----CCCCCCCCCCCCCchH
Q psy2859           4 PMEGN-EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD-----HGADVNSGRHEHGYSA   77 (534)
Q Consensus         4 ~~~~~-~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~-----~ga~vn~~~~~~G~Tp   77 (534)
                      |..+. |||+||..++.+ .+++|.+.|+++-..|.+|++|+|.|+..|..++.+..+.     .+..+|. .+..|.||
T Consensus       151 de~~~TpLh~A~~~~~~E-~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~-~~n~~~~p  228 (929)
T KOG0510|consen  151 DENGFTPLHLAARKNKVE-AKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINF-DNNEKATP  228 (929)
T ss_pred             ccCCCchhhHHHhcChHH-HHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhccccc-ccCCCCcc
Confidence            34454 455555544444 8888888899998888889999999999999999888887     5678888 78899999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC---------------CCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCC
Q psy2859          78 LHFAALSGKDDVCACLLSAGAK---------------SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLET  142 (534)
Q Consensus        78 Lh~A~~~g~~~iv~~Ll~~ga~---------------~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~  142 (534)
                      ||.|+..|++++++.+|+.|+.               +|..|++|.||||+|+..|..+.++.|+..|++++.+      
T Consensus       229 LhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~k------  302 (929)
T KOG0510|consen  229 LHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSK------  302 (929)
T ss_pred             hhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCccccc------
Confidence            9999999999999999998653               2456889999999999999999999999999999665      


Q ss_pred             CCCCCCCCCchHHHHHHhcCchHHHHHHh-h-------------CCcccccccchHHHHHHHHHhhhhcCCCcccccccC
Q psy2859         143 TPKLDPILAEPLHTFIMQVNIHPVRVALN-L-------------LPSLISHLPSVRKVVSLLSEKQMKAGPETNEIIQGD  208 (534)
Q Consensus       143 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~-------------~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~  208 (534)
                          +.++.||||.|+..|+++.|+.||+ .             +|++++...++..++++|.+++.-.    +. ++..
T Consensus       303 ----n~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~----~~-~~e~  373 (929)
T KOG0510|consen  303 ----NKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF----LN-MSEA  373 (929)
T ss_pred             ----CCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh----hc-cccc
Confidence                5678999999999999999999998 2             8999999999999999997655433    21 1122


Q ss_pred             CCcchHHHHHHHhc
Q psy2859         209 KPCDLVELFVRKIH  222 (534)
Q Consensus       209 ~~~~~~~~~l~k~~  222 (534)
                      ..+..+.+++..+.
T Consensus       374 D~dg~TaLH~Aa~~  387 (929)
T KOG0510|consen  374 DSDGNTALHLAAKY  387 (929)
T ss_pred             ccCCchhhhHHHHh
Confidence            45566667766654

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.86  E-value=5.1e-21  Score=185.24  Aligned_cols=150  Identities=18%  Similarity=0.166  Sum_probs=125.0

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCC----CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYD----EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA   81 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d----~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A   81 (534)
                      +.++++++|...+...+.++|.++|+++|.++    ..|.||||+|+..|+.+++++|+++|||+|...+..|.||||+|
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~A  111 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYIS  111 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHH
Confidence            44677888877766777777778899999874    58999999999999999999999999999983356899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859          82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus        82 ~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      +..|+.+++++|++.|++++.+|..|.||||+|+..+...++.++...  .             .+..+.+|++.+   +
T Consensus       112 a~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~~---~  173 (300)
T PHA02884        112 VLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMICDN--E-------------ISNFYKHPKKIL---I  173 (300)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhcCC--c-------------ccccccChhhhh---c
Confidence            999999999999999999999999999999999998777777655422  1             244567787764   4


Q ss_pred             CchHHHHHHhhC
Q psy2859         162 NIHPVRVALNLL  173 (534)
Q Consensus       162 ~~~~v~~Ll~~~  173 (534)
                      +.+++++|+++.
T Consensus       174 n~ei~~~Lish~  185 (300)
T PHA02884        174 NFDILKILVSHF  185 (300)
T ss_pred             cHHHHHHHHHHH
Confidence            689999998873

>KOG0510|consensus

Probab=99.86  E-value=2.5e-21  Score=199.10  Aligned_cols=215  Identities=22%  Similarity=0.166  Sum_probs=139.7

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL   83 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~   83 (534)
                      |..+++.+++|...+.....+.|.+.|++++..|..+.+|||+|+..|+.+.++.|+++|+|||. .|.+|.||||+||.
T Consensus        85 D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl-~de~~~TpLh~A~~  163 (929)
T KOG0510|consen   85 DSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNL-EDENGFTPLHLAAR  163 (929)
T ss_pred             hcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccc-cccCCCchhhHHHh
Confidence            34455555555555555555555555777766666667777777777777777777777777766 66667777777777


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhh-----cCCceeeccCCC------------------
Q psy2859          84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAK-----SEVDYYIVPRGL------------------  140 (534)
Q Consensus        84 ~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~-----~~~~~~~~~~~~------------------  140 (534)
                      .++.+..+.|+++|+++-..|..|.+|+|.|+..|..+..++.+.     .+..++..+++.                  
T Consensus       164 ~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~lk~  243 (929)
T KOG0510|consen  164 KNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEMLKM  243 (929)
T ss_pred             cChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcCCHHHHHH
Confidence            766666666666666666555555555555555555555544444     333333332221                  


Q ss_pred             --------------------CCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHH
Q psy2859         141 --------------------ETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVS  188 (534)
Q Consensus       141 --------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~  188 (534)
                                          ...+..|.+|.||||+|+..|+.+.++.|+..            +|++.++..+....++
T Consensus       244 ~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~  323 (929)
T KOG0510|consen  244 CLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVE  323 (929)
T ss_pred             HHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHH
Confidence                                11134578899999999999999999999976            8999999999999999


Q ss_pred             HHHHhhhhcCCCccc----------ccccCCCcchHHHHHHHh
Q psy2859         189 LLSEKQMKAGPETNE----------IIQGDKPCDLVELFVRKI  221 (534)
Q Consensus       189 ~l~~~~~~~~~~~~~----------~l~~~~~~~~~~~~l~k~  221 (534)
                      .|++  .......|+          +....|.+..+++.+.+.
T Consensus       324 rLL~--~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~G  364 (929)
T KOG0510|consen  324 RLLQ--ESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKG  364 (929)
T ss_pred             HHHh--CcCccccccccccCCCchhhhhhcCHHHHHHHHHhcC
Confidence            9977  111122222          455567777777776664

>KOG0512|consensus

Probab=99.86  E-value=4.8e-21  Score=162.16  Aligned_cols=142  Identities=25%  Similarity=0.239  Sum_probs=123.7

Q ss_pred             hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHH
Q psy2859           9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD   88 (534)
Q Consensus         9 ~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~   88 (534)
                      -++.|+..+.+..|+.||.+..-.+|.+|.+|+||||-|+++|+++||+.|+..||+++. +...|+||||-||.-.+.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a-~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEA-KTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCccc-ccccCccchhhhhcccchh
Confidence            367888899999999999998888999999999999999999999999999999999999 8889999999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHh-cHHHHHHHHhh-cCCceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859          89 VCACLLSAGAKSYATNSVGRTASQMAAFV-VVAVINNYIAK-SEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus        89 iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~-~~~~i~~~L~~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      ++..||++|+|+|.......||||+|+.. +....+.+|+. .+++.          ......+.||+.+|-+.+
T Consensus       145 va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~p----------g~~nn~eeta~~iARRT~  209 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHP----------GLKNNLEETAFDIARRTS  209 (228)
T ss_pred             HHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccCh----------hhhcCccchHHHHHHHhh
Confidence            99999999999999999999999999988 44555666654 33332          234566899998887654

>PHA03095 ankyrin-like protein; Provisional

Probab=99.86  E-value=7.7e-21  Score=200.96  Aligned_cols=178  Identities=22%  Similarity=0.179  Sum_probs=140.0

Q ss_pred             CCCchhHHHHHH--hCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2859           4 PMEGNEIFDFIS--KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG--NKQICQLLLDHGADVNSGRHEHGYSALH   79 (534)
Q Consensus         4 ~~~~~~l~~aa~--~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~ga~vn~~~~~~G~TpLh   79 (534)
                      +..|.+++|.|.  ......+.++|.+.|++++..|..|.||||+|+..+  +.+++++|+++|++++. .+..|.||||
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~-~d~~g~t~Lh  192 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYA-VDDRFRSLLH  192 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcc-cCCCCCCHHH
Confidence            344555555554  223456667777779999999999999999988865  67899999999999988 5888999999


Q ss_pred             HHHHc--CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcH--HHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHH
Q psy2859          80 FAALS--GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVV--AVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLH  155 (534)
Q Consensus        80 ~A~~~--g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~--~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  155 (534)
                      +|+..  ++.+++++|++.|++++.+|..|.||||+|+..+.  ..++..|+..|++++.          .|..|.||||
T Consensus       193 ~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~----------~d~~g~TpLh  262 (471)
T PHA03095        193 HHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA----------RNRYGQTPLH  262 (471)
T ss_pred             HHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCC----------cCCCCCCHHH
Confidence            88865  67788888888888888888888888888888764  3577788888888743          3667888888


Q ss_pred             HHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         156 TFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       156 ~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      +|+..|+.+++++|++.            +|++.+...+...+++.|.+
T Consensus       263 ~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~  311 (471)
T PHA03095        263 YAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA  311 (471)
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            88888888888888865            67888888888888888754

>KOG0502|consensus

Probab=99.86  E-value=1.6e-21  Score=171.15  Aligned_cols=149  Identities=23%  Similarity=0.165  Sum_probs=129.8

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHH
Q psy2859          10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDV   89 (534)
Q Consensus        10 l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~i   89 (534)
                      +..++.+.....+..++.  ...+|..|..|.|||++|+.+|++.+|++||+.|||++. ......|+|++|+..|..+|
T Consensus       132 ~~slsVhql~L~~~~~~~--~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~-lgk~resALsLAt~ggytdi  208 (296)
T KOG0502|consen  132 PLSLSVHQLHLDVVDLLV--NNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDA-LGKYRESALSLATRGGYTDI  208 (296)
T ss_pred             hhhHHHHHHHHHHHHHHh--hccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhh-hhhhhhhhHhHHhcCChHHH
Confidence            333444333444444433  357899999999999999999999999999999999999 88889999999999999999


Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHH
Q psy2859          90 CACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVA  169 (534)
Q Consensus        90 v~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  169 (534)
                      |++||+++.|+|.-|.+|-|||.+|+..++..+++.|+..|++++          ..+..|++++..|+..|+. +|+..
T Consensus       209 V~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t----------~e~dsGy~~mdlAValGyr-~Vqqv  277 (296)
T KOG0502|consen  209 VELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVT----------QEDDSGYWIMDLAVALGYR-IVQQV  277 (296)
T ss_pred             HHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcc----------cccccCCcHHHHHHHhhhH-HHHHH
Confidence            999999999999999999999999999999999999999999984          3477899999999999997 88877


Q ss_pred             Hhh
Q psy2859         170 LNL  172 (534)
Q Consensus       170 l~~  172 (534)
                      ++.
T Consensus       278 ie~  280 (296)
T KOG0502|consen  278 IEK  280 (296)
T ss_pred             HHH
Confidence            764

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.86  E-value=7.6e-21  Score=209.47  Aligned_cols=156  Identities=21%  Similarity=0.182  Sum_probs=133.5

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYK-GNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~-g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      +.++||.|+..|....+.++|...|+++|..|..|+||||+|+.. ++.+++++|++.|+++|. .|..|.||||+|+..
T Consensus       307 g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~-~d~~G~TpLh~Aa~~  385 (682)
T PHA02876        307 GETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA-RDYCDKTPIHYAAVR  385 (682)
T ss_pred             CCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCcc-CCCCCCCHHHHHHHc
Confidence            346666677777556666777777999999999999999999985 578899999999999998 899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHh-cHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc-C
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFV-VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV-N  162 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~-~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-~  162 (534)
                      |+.++|++|+++|++++..+..|.||||+|+.. +...++++|+..|++++.          .|..|.||||+|+..+ +
T Consensus       386 ~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~----------~d~~G~TpLh~Aa~~~~~  455 (682)
T PHA02876        386 NNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNS----------KNKDLSTPLHYACKKNCK  455 (682)
T ss_pred             CCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCc----------CCCCCChHHHHHHHhCCc
Confidence            999999999999999999999999999999876 446678999999999854          4778999999999876 6


Q ss_pred             chHHHHHHhh
Q psy2859         163 IHPVRVALNL  172 (534)
Q Consensus       163 ~~~v~~Ll~~  172 (534)
                      .+++++|++.
T Consensus       456 ~~iv~lLl~~  465 (682)
T PHA02876        456 LDVIEMLLDN  465 (682)
T ss_pred             HHHHHHHHHC
Confidence            7999999987

>KOG0514|consensus

Probab=99.86  E-value=1.9e-21  Score=182.79  Aligned_cols=156  Identities=24%  Similarity=0.239  Sum_probs=139.8

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHc-----CCHHHHHHHHHCCCCCCCCCCCCCchHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYK-----GNKQICQLLLDHGADVNSGRHEHGYSALHF   80 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~-----g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~   80 (534)
                      +.+.||+++.++|++.|..||...-+++|..|..|+||+|+|+..     .+..+|..|.+.| |||++....|.|+||+
T Consensus       268 GNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg-nVNaKAsQ~gQTALML  346 (452)
T KOG0514|consen  268 GNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG-DVNAKASQHGQTALML  346 (452)
T ss_pred             CCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc-Ccchhhhhhcchhhhh
Confidence            446677788899999999999998899999999999999999875     5678999999886 8998788899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhc-CCceeeccCCCCCCCCCCCCCCchHHHHHH
Q psy2859          81 AALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKS-EVDYYIVPRGLETTPKLDPILAEPLHTFIM  159 (534)
Q Consensus        81 A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  159 (534)
                      |+.+|+.++|+.||..|||+|++|.+|.|+|+.|+.+|+.+|+++|+.. +.|+          ...|.+|.|+|.+|..
T Consensus       347 AVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~----------sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  347 AVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDI----------SLTDVDGSTALSIALE  416 (452)
T ss_pred             hhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccc----------eeecCCCchhhhhHHh
Confidence            9999999999999999999999999999999999999999999998864 4555          3458899999999999


Q ss_pred             hcCchHHHHHHhh
Q psy2859         160 QVNIHPVRVALNL  172 (534)
Q Consensus       160 ~~~~~~v~~Ll~~  172 (534)
                      .|+.+|.-+|..+
T Consensus       417 agh~eIa~mlYa~  429 (452)
T KOG0514|consen  417 AGHREIAVMLYAH  429 (452)
T ss_pred             cCchHHHHHHHHH
Confidence            9999998888765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.85  E-value=9.7e-21  Score=204.12  Aligned_cols=157  Identities=15%  Similarity=0.176  Sum_probs=125.9

Q ss_pred             CCCchhHHHHH---HhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC-----------------------------
Q psy2859           4 PMEGNEIFDFI---SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG-----------------------------   51 (534)
Q Consensus         4 ~~~~~~l~~aa---~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g-----------------------------   51 (534)
                      |..|.+++|+|   ...+...+.++|++.|++++..+..|+||||+|+..|                             
T Consensus        29 d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~~~~  108 (661)
T PHA02917         29 NQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNIFSY  108 (661)
T ss_pred             CCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcchHHH
Confidence            45565555553   2223445555555679999999999999999888644                             


Q ss_pred             ------CHHHHHHHHHCCCCCCCCCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCCCCCC---CC-----------CC
Q psy2859          52 ------NKQICQLLLDHGADVNSGRHEHGYSALHFAA--LSGKDDVCACLLSAGAKSYATNS---VG-----------RT  109 (534)
Q Consensus        52 ------~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~--~~g~~~iv~~Ll~~ga~~~~~~~---~G-----------~T  109 (534)
                            ++++|++|+++|+|+|. .|.+|.||||+|+  ..|+.++|++|+++|+++|..|.   .|           .|
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadin~-~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t  187 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDLSV-KCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGT  187 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCCCc-cCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccccccccccc
Confidence                  45788889999999998 8999999999654  57899999999999999986653   34           59


Q ss_pred             HHHHHHH-----------hcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCc--hHHHHHHh
Q psy2859         110 ASQMAAF-----------VVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNI--HPVRVALN  171 (534)
Q Consensus       110 pL~~A~~-----------~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--~~v~~Ll~  171 (534)
                      |||+|+.           .++.+++++|+.+|++++.          .|..|.||||+|+..|+.  ++|++|++
T Consensus       188 ~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~----------~d~~G~TpLh~A~~~g~~~~eivk~Li~  252 (661)
T PHA02917        188 VLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSS----------IDKNYCTALQYYIKSSHIDIDIVKLLMK  252 (661)
T ss_pred             HHHHHHhhcccccccccccCcHHHHHHHHHCCCCccc----------CCCCCCcHHHHHHHcCCCcHHHHHHHHh
Confidence            9999986           3578999999999999854          478899999999999986  79999986

>PHA02741 hypothetical protein; Provisional

Probab=99.85  E-value=7.5e-21  Score=171.71  Aligned_cols=129  Identities=19%  Similarity=0.226  Sum_probs=113.5

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCCC
Q psy2859          33 VDLYDEHGMTPLQHAAYKGNKQICQLLLD------HGADVNSGRHEHGYSALHFAALSGK----DDVCACLLSAGAKSYA  102 (534)
Q Consensus        33 ~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~------~ga~vn~~~~~~G~TpLh~A~~~g~----~~iv~~Ll~~ga~~~~  102 (534)
                      ++.+|..|.||||+|+..|+.+++++|+.      .|++++. .|..|.||||+|+..|+    .+++++|++.|+++|.
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~-~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNA-TDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhc-cCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Confidence            45668889999999999999999998864      3688888 89999999999999998    5889999999999999


Q ss_pred             CCC-CCCCHHHHHHHhcHHHHHHHHhh-cCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         103 TNS-VGRTASQMAAFVVVAVINNYIAK-SEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       103 ~~~-~G~TpL~~A~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ++. .|+||||+|+..++.+++++|+. .|++++.          .+..|.||||.|+..++.+++++|+++
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~----------~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHF----------CNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCc----------CCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            885 89999999999999999999997 5888743          367899999999999999999999876

>PHA02795 ankyrin-like protein; Provisional

Probab=99.85  E-value=1.8e-20  Score=188.49  Aligned_cols=167  Identities=15%  Similarity=0.020  Sum_probs=145.0

Q ss_pred             HHHhCCHHHHHHHHHhCCCCCc------cCCCCCCcHHHHHHH--cCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859          13 FISKNDIDNVQKLLSEHKLRVD------LYDEHGMTPLQHAAY--KGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus        13 aa~~g~~~~v~~lL~~~g~~~n------~~d~~g~TpLh~Aa~--~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      .|...+..++.++|..+|+++|      .++..++|+||.|+.  .|+.++|++|+++|||++. .  .+.||||.|+..
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~-~--~~~t~lh~A~~~  159 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK-I--ECLNAYFRGICK  159 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC-C--CCCCHHHHHHHc
Confidence            5667777888888888899999      778889999999999  8999999999999999987 3  458999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCC------CCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHH
Q psy2859          85 GKDDVCACLLSAGAKSYAT------NSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFI  158 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~------~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  158 (534)
                      |+.++|++|+++|++.+..      +..|.|++|.|+..+..+++++|+.+|++++.          .+..|.||||+|+
T Consensus       160 ~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN~----------kD~~G~TpLh~Aa  229 (437)
T PHA02795        160 KESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDINQ----------LDAGGRTLLYRAI  229 (437)
T ss_pred             CcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcCc----------CCCCCCCHHHHHH
Confidence            9999999999999854222      23588999999999999999999999999954          4788999999999


Q ss_pred             HhcCchHHHHHHhh------------CCcccccccc--------hHHHHHHHHH
Q psy2859         159 MQVNIHPVRVALNL------------LPSLISHLPS--------VRKVVSLLSE  192 (534)
Q Consensus       159 ~~~~~~~v~~Ll~~------------~p~~~~~~~~--------~~~~~~~l~~  192 (534)
                      ..|+.+++++|+++            +|++.+...+        +..+++.|.+
T Consensus       230 ~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~  283 (437)
T PHA02795        230 YAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLR  283 (437)
T ss_pred             HcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHh
Confidence            99999999999977            6788777665        4578888854

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.84  E-value=1.7e-20  Score=168.66  Aligned_cols=133  Identities=15%  Similarity=0.175  Sum_probs=120.2

Q ss_pred             CCCCCccCCCCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHH---HHHHHhcCCCCC
Q psy2859          29 HKLRVDLYDEHGMTPLQHAAYKGNK----QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDV---CACLLSAGAKSY  101 (534)
Q Consensus        29 ~g~~~n~~d~~g~TpLh~Aa~~g~~----~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~i---v~~Ll~~ga~~~  101 (534)
                      +|++++..+..+.++||.||..|++    +++++|++.|++++. .|..|+||||+|+..|+.++   +++|++.|+++|
T Consensus         9 ~~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~-~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin   87 (166)
T PHA02743          9 NNLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHR-YDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN   87 (166)
T ss_pred             cchHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhc-cCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC
Confidence            5788888899999999999999998    677788899999998 89999999999999988654   899999999999


Q ss_pred             CCC-CCCCCHHHHHHHhcHHHHHHHHhh-cCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         102 ATN-SVGRTASQMAAFVVVAVINNYIAK-SEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       102 ~~~-~~G~TpL~~A~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      .++ ..|.||||+|+..++.+++++|+. .|++++.          .+..|.||||+|+..++.+++++|+++
T Consensus        88 ~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~----------~d~~g~tpL~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743         88 ARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGA----------INYQHETAYHIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             CCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccC----------cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            998 589999999999999999999995 7998753          467899999999999999999999987

>KOG0195|consensus

Probab=99.84  E-value=2.1e-21  Score=177.04  Aligned_cols=139  Identities=28%  Similarity=0.365  Sum_probs=131.3

Q ss_pred             hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHH
Q psy2859           9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD   88 (534)
Q Consensus         9 ~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~   88 (534)
                      .+|.+++.||...|+-+|.+..-|.|.-|..|.+|||+||..|+..+|+.||..|+.+|. .+....||||+|+.+||.+
T Consensus         3 dif~wcregna~qvrlwld~tehdln~gddhgfsplhwaakegh~aivemll~rgarvn~-tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    3 DIFGWCREGNAFQVRLWLDDTEHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS-TNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhhhhhhcCCeEEEEEEecCcccccccccccCcchhhhhhhcccHHHHHHHHhccccccc-ccCCCCcchhhhhhcccHH
Confidence            478999999999999999998899999999999999999999999999999999999999 8888899999999999999


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHH
Q psy2859          89 VCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFI  158 (534)
Q Consensus        89 iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  158 (534)
                      +|+.||+..+|+|..|..|.||||+||..|...|.+-|+..|+.++          ..++.|.|||..|-
T Consensus        82 ivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~----------icnk~g~tpldkak  141 (448)
T KOG0195|consen   82 IVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVN----------ICNKKGMTPLDKAK  141 (448)
T ss_pred             HHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceee----------ecccCCCCchhhhc
Confidence            9999999999999999999999999999999999999999999984          45788999997664

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=6e-20  Score=165.82  Aligned_cols=126  Identities=20%  Similarity=0.218  Sum_probs=113.0

Q ss_pred             CchhHHHHHHhCCHHHHHHHHH-----hCCCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHCCCCCCCCCCC-CCc
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLS-----EHKLRVDLYDEHGMTPLQHAAYKGN----KQICQLLLDHGADVNSGRHE-HGY   75 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~-----~~g~~~n~~d~~g~TpLh~Aa~~g~----~~iv~~Ll~~ga~vn~~~~~-~G~   75 (534)
                      +.++||.||..|+.+.+..++.     ..|+++|.+|..|.||||+|+..|+    .+++++|+++|+++|. .+. .|.
T Consensus        21 g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~-~~~~~g~   99 (169)
T PHA02741         21 GENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA-QEMLEGD   99 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC-CCcCCCC
Confidence            4577788888888888877753     3478899999999999999999999    5899999999999998 674 899


Q ss_pred             hHHHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCc
Q psy2859          76 SALHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVD  132 (534)
Q Consensus        76 TpLh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~  132 (534)
                      ||||+|+..++.+++++|+. .|++++..|..|.||||+|+..+..+++++|++.++.
T Consensus       100 TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        100 TALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            99999999999999999998 5999999999999999999999999999999987655

>KOG0514|consensus

Probab=99.82  E-value=1.6e-20  Score=176.75  Aligned_cols=143  Identities=26%  Similarity=0.298  Sum_probs=124.8

Q ss_pred             CHHHHHHHHHhCCC--------CCccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCchHHHHHHHc----
Q psy2859          18 DIDNVQKLLSEHKL--------RVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG-ADVNSGRHEHGYSALHFAALS----   84 (534)
Q Consensus        18 ~~~~v~~lL~~~g~--------~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g-a~vn~~~~~~G~TpLh~A~~~----   84 (534)
                      +.+.|..+|..+++        -||..|.+|+|+||||+.++|+++|+.||+.| ++||. +|.-|+||+|+|+..    
T Consensus       238 ~pe~V~~~l~~f~als~~lL~yvVNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~-qNrAGYtpiMLaALA~lk~  316 (452)
T KOG0514|consen  238 DPEQVEDYLAYFEALSPPLLEYVVNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQ-QNRAGYTPVMLAALAKLKQ  316 (452)
T ss_pred             CHHHHHHHHHHHHhcChHHHHHHhhhhcCCCCeeeeeeecccchHHHHHHhccCcccccc-cccccccHHHHHHHHhhcc
Confidence            35566666655432        26888999999999999999999999999987 59998 899999999999864    


Q ss_pred             -CCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcC
Q psy2859          85 -GKDDVCACLLSAGAKSYATNS-VGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVN  162 (534)
Q Consensus        85 -g~~~iv~~Ll~~ga~~~~~~~-~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  162 (534)
                       .+..+|+.|...| |+|++.. .|+|+|++|+.+|..++++.|+..|+|+|+.          |.+|.|+|+.|+.+|+
T Consensus       317 ~~d~~vV~~LF~mg-nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQ----------DdDGSTALMCA~EHGh  385 (452)
T KOG0514|consen  317 PADRTVVERLFKMG-DVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQ----------DDDGSTALMCAAEHGH  385 (452)
T ss_pred             hhhHHHHHHHHhcc-CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccc----------cCCccHHHhhhhhhCh
Confidence             4678899998876 6777755 7999999999999999999999999999654          8899999999999999


Q ss_pred             chHHHHHHhh
Q psy2859         163 IHPVRVALNL  172 (534)
Q Consensus       163 ~~~v~~Ll~~  172 (534)
                      .+||++||..
T Consensus       386 kEivklLLA~  395 (452)
T KOG0514|consen  386 KEIVKLLLAV  395 (452)
T ss_pred             HHHHHHHhcc
Confidence            9999999976

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=3.3e-19  Score=192.28  Aligned_cols=156  Identities=19%  Similarity=0.130  Sum_probs=125.6

Q ss_pred             hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCC---CC---------
Q psy2859           9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAA--YKGNKQICQLLLDHGADVNSGRHE---HG---------   74 (534)
Q Consensus         9 ~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa--~~g~~~iv~~Ll~~ga~vn~~~~~---~G---------   74 (534)
                      +++++|..++..++.++|.++|+++|..|..|+||||+|+  ..|+.++|++||++||++|. .|.   .|         
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~-~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLY-EDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccc-ccccccccccccccccc
Confidence            4555555555556666677779999999999999999654  57899999999999999986 432   34         


Q ss_pred             --chHHHHHHH-----------cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHH--HHHHHHhhcCCceeeccCC
Q psy2859          75 --YSALHFAAL-----------SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVA--VINNYIAKSEVDYYIVPRG  139 (534)
Q Consensus        75 --~TpLh~A~~-----------~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~--~i~~~L~~~~~~~~~~~~~  139 (534)
                        .||||+|+.           .++.++|++|+++|+++|.+|..|.||||+|+..|+.  +++++|+. |++.+...  
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~--  260 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYS--  260 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccc--
Confidence              599999986           4689999999999999999999999999999999874  79999975 87764321  


Q ss_pred             CCCCCCCCCCCCchHHHHHHhc---------CchHHHHHHhh
Q psy2859         140 LETTPKLDPILAEPLHTFIMQV---------NIHPVRVALNL  172 (534)
Q Consensus       140 ~~~~~~~~~~g~t~L~~A~~~~---------~~~~v~~Ll~~  172 (534)
                          ...+..|.+|+++|+..+         +.++|++|++.
T Consensus       261 ----~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~  298 (661)
T PHA02917        261 ----YIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLEN  298 (661)
T ss_pred             ----cccCcccccchHHHHHHHhhccccccchHHHHHHHHhC
Confidence                234667888888888421         67899999988

>KOG4177|consensus

Probab=99.81  E-value=8.1e-20  Score=199.42  Aligned_cols=132  Identities=28%  Similarity=0.342  Sum_probs=106.4

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy2859          30 KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT  109 (534)
Q Consensus        30 g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~T  109 (534)
                      ++..+.....|.|+||+|...+...+++.|+++|++++. ++..|+||||.|+..|+.++|++||++|+|++.+++.|+|
T Consensus       497 ~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~-~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~T  575 (1143)
T KOG4177|consen  497 GANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDL-RTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYT  575 (1143)
T ss_pred             CCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceeh-hcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCC
Confidence            333333333444444444444444445555556677776 6788999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         110 ASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       110 pL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      |||.|+..|+.+++.+|+++|+++|.          .+.+|.|||++|+..|+++++++|+..
T Consensus       576 PLH~Aa~~G~~~i~~LLlk~GA~vna----------~d~~g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  576 PLHQAAQQGHNDIAELLLKHGASVNA----------ADLDGFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             hhhHHHHcChHHHHHHHHHcCCCCCc----------ccccCcchhHHHHHhcccchhhHHHhc
Confidence            99999999999999999999999854          478899999999999999999999876

>PHA02730 ankyrin-like protein; Provisional

Probab=99.81  E-value=4.1e-19  Score=186.94  Aligned_cols=155  Identities=11%  Similarity=0.112  Sum_probs=132.7

Q ss_pred             hHHHHHHhCC--HHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC----HHHHHHHHHCCC--CCCCCCCCCCchHHHH
Q psy2859           9 EIFDFISKND--IDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN----KQICQLLLDHGA--DVNSGRHEHGYSALHF   80 (534)
Q Consensus         9 ~l~~aa~~g~--~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~----~~iv~~Ll~~ga--~vn~~~~~~G~TpLh~   80 (534)
                      -|+.....++  ...+.++|+++|+++|.. ..|.||||+|+..++    .+++++||++|+  ++|. .|..|.||||.
T Consensus       346 ~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~-kd~~G~T~Lh~  423 (672)
T PHA02730        346 MLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINH-VSNNGRLCMYG  423 (672)
T ss_pred             HHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccc-cccCCCchHhH
Confidence            4666777773  678888999999999985 789999999998875    899999999998  6888 78899999994


Q ss_pred             ---HHHcC---------CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCC
Q psy2859          81 ---AALSG---------KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDP  148 (534)
Q Consensus        81 ---A~~~g---------~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~  148 (534)
                         |...+         ..+++++|+.+|+++|.+|..|.||||+|+..+..+++++|+.+|++++..          +.
T Consensus       424 ~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~----------d~  493 (672)
T PHA02730        424 LILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTT----------SR  493 (672)
T ss_pred             HHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCC----------CC
Confidence               33332         235799999999999999999999999999999999999999999998654          43


Q ss_pred             -CCCchHHHHHHh--cCchHHHHHHhhCCc
Q psy2859         149 -ILAEPLHTFIMQ--VNIHPVRVALNLLPS  175 (534)
Q Consensus       149 -~g~t~L~~A~~~--~~~~~v~~Ll~~~p~  175 (534)
                       .|.||||.|+..  ++.+++++|+++.|.
T Consensus       494 ~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~  523 (672)
T PHA02730        494 SIINTAIQKSSYRRENKTKLVDLLLSYHPT  523 (672)
T ss_pred             cCCcCHHHHHHHhhcCcHHHHHHHHHcCCC
Confidence             589999999874  789999999998663

>KOG4177|consensus

Probab=99.80  E-value=1.2e-19  Score=198.06  Aligned_cols=177  Identities=24%  Similarity=0.249  Sum_probs=163.1

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .+++|.|+..|.+..+..++.+.|+++|.....|.||||+|+..|+.++++.|++.++..+. ....|.|+||+|...++
T Consensus       441 ~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~-~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  441 YTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNL-DAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             CChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCc-cchhccchhhhhhhhhh
Confidence            46677777777788888889999999999999999999999999999999999999999888 78899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      ..+++.++++|++++.++..|+||||+|+..|+..+|++|+++|+|++..          ++.|+||||.|+..|+.+++
T Consensus       520 v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak----------~~~G~TPLH~Aa~~G~~~i~  589 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAK----------DKLGYTPLHQAAQQGHNDIA  589 (1143)
T ss_pred             HHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccccc----------CCCCCChhhHHHHcChHHHH
Confidence            99999999999999999999999999999999999999999999999654          67899999999999999999


Q ss_pred             HHHHhh------------CCcccccccchHHHHHHHHHhh
Q psy2859         167 RVALNL------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       167 ~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                      ++|+++            +|++.+...+...+++++....
T Consensus       590 ~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~  629 (1143)
T KOG4177|consen  590 ELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVT  629 (1143)
T ss_pred             HHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhcc
Confidence            999988            7888888888888888886543

>KOG0502|consensus

Probab=99.80  E-value=6.5e-20  Score=161.15  Aligned_cols=154  Identities=21%  Similarity=0.157  Sum_probs=132.0

Q ss_pred             CCchhH-HHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH
Q psy2859           5 MEGNEI-FDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL   83 (534)
Q Consensus         5 ~~~~~l-~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~   83 (534)
                      .+|... +.++-.+ .......++.+|...|..+-.+++|+++++...+++.+.+|.+.  .+|. .|..|.|||+||+.
T Consensus        94 p~g~~~~~v~ap~~-s~~k~sttltN~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n--~VN~-~De~GfTpLiWAaa  169 (296)
T KOG0502|consen   94 PEGWSALLVAAPCG-SVDKVSTTLTNGARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNN--KVNA-CDEFGFTPLIWAAA  169 (296)
T ss_pred             chhhhhhhhcCCCC-CcceeeeeecccccCCccccccCChhhHHHHHHHHHHHHHHhhc--cccC-ccccCchHhHHHHh
Confidence            344443 4444444 44444455566899999999999999999999999888877765  5677 89999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCc
Q psy2859          84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNI  163 (534)
Q Consensus        84 ~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  163 (534)
                      +|++.+|++||+.||+++...+.-.|+|.+|+..|..+||++|+..+.|+|          ..|.+|.|||.+|++.++.
T Consensus       170 ~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN----------vyDwNGgTpLlyAvrgnhv  239 (296)
T KOG0502|consen  170 KGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN----------VYDWNGGTPLLYAVRGNHV  239 (296)
T ss_pred             cCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc----------eeccCCCceeeeeecCChH
Confidence            999999999999999999999999999999999999999999999999985          4589999999999999999


Q ss_pred             hHHHHHHhh
Q psy2859         164 HPVRVALNL  172 (534)
Q Consensus       164 ~~v~~Ll~~  172 (534)
                      ++|+.||+.
T Consensus       240 kcve~Ll~s  248 (296)
T KOG0502|consen  240 KCVESLLNS  248 (296)
T ss_pred             HHHHHHHhc
Confidence            999999987

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.80  E-value=1.1e-18  Score=169.02  Aligned_cols=128  Identities=15%  Similarity=0.093  Sum_probs=112.6

Q ss_pred             ccCCCCCCcH-HHHHHHcCCHHHHHHHHHCCCCCCCCC----CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCC-CCCC
Q psy2859          34 DLYDEHGMTP-LQHAAYKGNKQICQLLLDHGADVNSGR----HEHGYSALHFAALSGKDDVCACLLSAGAKSYAT-NSVG  107 (534)
Q Consensus        34 n~~d~~g~Tp-Lh~Aa~~g~~~iv~~Ll~~ga~vn~~~----~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~-~~~G  107 (534)
                      -.+|..|+|+ ||.|+..|+.+++++|+++|||+|. .    +..|.||||+|+..|+.+++++|+++||++|.. +..|
T Consensus        26 ~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~-~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         26 KKKNKICIANILYSSIKFHYTDIIDAILKLGADPEA-PFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccc-cCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            3567788775 5566777999999999999999998 5    458999999999999999999999999999986 4689


Q ss_pred             CCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         108 RTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       108 ~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      .||||+|+..++.+++++|+..|++++.          .+..|.||||+|+..++.+++..+...
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~----------kd~~G~TpL~~A~~~~~~~~~~~~~~~  159 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINI----------QTNDMVTPIELALMICNNFLAFMICDN  159 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHHhCChhHHHHhcCC
Confidence            9999999999999999999999999854          367899999999999999988766543

>KOG0507|consensus

Probab=99.80  E-value=1.9e-19  Score=184.06  Aligned_cols=189  Identities=22%  Similarity=0.224  Sum_probs=160.5

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL   83 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~   83 (534)
                      |..|.+++|-|..++...+.+||+++.+-++..|..|.+|||+|++.|+.++|++||.++..+|. .+..|.||||.|+.
T Consensus        46 d~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na-~~~e~~tplhlaaq  124 (854)
T KOG0507|consen   46 DYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNA-VNIENETPLHLAAQ  124 (854)
T ss_pred             CccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCc-ccccCcCccchhhh
Confidence            34565666666666666677777777889999999999999999999999999999999999999 89999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCc
Q psy2859          84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNI  163 (534)
Q Consensus        84 ~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  163 (534)
                      +||.++|.+|+.+|+|+-++|+.+.|+|.+|+..|...+++.|++.....-...  .......+..+.+|||.|+.+|+.
T Consensus       125 hgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~--~~~~~~~~~~~~~plHlaakngh~  202 (854)
T KOG0507|consen  125 HGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSL--RVGDIKRPFPAIYPLHLAAKNGHV  202 (854)
T ss_pred             hcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcc--cCCCCCCCCCCcCCcchhhhcchH
Confidence            999999999999999999999999999999999999999999998843332211  111455677799999999999999


Q ss_pred             hHHHHHHhh-----------CCcccccccchHHHHHHHHHhhh
Q psy2859         164 HPVRVALNL-----------LPSLISHLPSVRKVVSLLSEKQM  195 (534)
Q Consensus       164 ~~v~~Ll~~-----------~p~~~~~~~~~~~~~~~l~~~~~  195 (534)
                      ++++.|++.           +.++.+.+-+..+++..|.+.++
T Consensus       203 ~~~~~ll~ag~din~~t~~gtalheaalcgk~evvr~ll~~gi  245 (854)
T KOG0507|consen  203 ECMQALLEAGFDINYTTEDGTALHEAALCGKAEVVRFLLEIGI  245 (854)
T ss_pred             HHHHHHHhcCCCcccccccchhhhhHhhcCcchhhhHHHhhcc
Confidence            999999987           56778888888888888866544

>KOG0505|consensus

Probab=99.79  E-value=8.5e-19  Score=173.63  Aligned_cols=153  Identities=25%  Similarity=0.343  Sum_probs=131.3

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD   87 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~   87 (534)
                      -.++.|+..|+.+.+..+|.. |+++|..+.+|.|+||-++.-.+.+||++|+++|++||. .|..|+||||.|+..||.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~-ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~-~d~e~wtPlhaaascg~~  119 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNR-GASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNA-QDNEGWTPLHAAASCGYL  119 (527)
T ss_pred             HHHHhccccccHHHHHHHhcc-CCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCccc-cccccCCcchhhcccccH
Confidence            346677788899999988877 899999999999999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCC-----------------------------------------------------------CCC
Q psy2859          88 DVCACLLSAGAKSYATNS-----------------------------------------------------------VGR  108 (534)
Q Consensus        88 ~iv~~Ll~~ga~~~~~~~-----------------------------------------------------------~G~  108 (534)
                      .++++|+..|+++-..|.                                                           .|-
T Consensus       120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~  199 (527)
T KOG0505|consen  120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGA  199 (527)
T ss_pred             HHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccc
Confidence            999999999987654442                                                           277


Q ss_pred             CHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         109 TASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       109 TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      |.||+|+.+|..++..+|+++|.++++          .|.+|+||||.|+..|..+++++|+++
T Consensus       200 T~lHvAaa~Gy~e~~~lLl~ag~~~~~----------~D~dgWtPlHAAA~Wg~~~~~elL~~~  253 (527)
T KOG0505|consen  200 TALHVAAANGYTEVAALLLQAGYSVNI----------KDYDGWTPLHAAAHWGQEDACELLVEH  253 (527)
T ss_pred             hHHHHHHhhhHHHHHHHHHHhccCccc----------ccccCCCcccHHHHhhhHhHHHHHHHh
Confidence            888888888888888888888887744          367788888888888888888877766

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.79  E-value=3.7e-19  Score=158.30  Aligned_cols=128  Identities=17%  Similarity=0.219  Sum_probs=104.6

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHh----CCCCCccCCCCCCcHHHHHHHcCCH---HHHHHHHHCCCCCCCCCC-CCCchH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSE----HKLRVDLYDEHGMTPLQHAAYKGNK---QICQLLLDHGADVNSGRH-EHGYSA   77 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~----~g~~~n~~d~~g~TpLh~Aa~~g~~---~iv~~Ll~~ga~vn~~~~-~~G~Tp   77 (534)
                      +.++||.|+..|+...+..+...    .+..++.+|..|.||||+|+..|+.   +++++|++.|+++|. .+ ..|.||
T Consensus        17 g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~-~~~~~g~T~   95 (154)
T PHA02736         17 GENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING-KERVFGNTP   95 (154)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc-cCCCCCCcH
Confidence            34666777788774332221111    1122345688999999999999987   468999999999998 66 599999


Q ss_pred             HHHHHHcCCHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCcee
Q psy2859          78 LHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYY  134 (534)
Q Consensus        78 Lh~A~~~g~~~iv~~Ll~-~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~  134 (534)
                      ||+|+..|+.+++++|+. .|++++.+|..|.||||+|+..+..+++++|+..|++.+
T Consensus        96 Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         96 LHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999998 599999999999999999999999999999999998853

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.78  E-value=3.7e-19  Score=158.32  Aligned_cols=127  Identities=18%  Similarity=0.197  Sum_probs=106.5

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC--CC-----CCCCCCCCchHHHHHHHcCCHH---HHHHHHhcCCCCCC
Q psy2859          33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA--DV-----NSGRHEHGYSALHFAALSGKDD---VCACLLSAGAKSYA  102 (534)
Q Consensus        33 ~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga--~v-----n~~~~~~G~TpLh~A~~~g~~~---iv~~Ll~~ga~~~~  102 (534)
                      ++..|..|.||||+|+..|+.  +.+|+..+.  +.     +. .|..|.||||+|+..|+.+   ++++|++.|++++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~-~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~   86 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLE-YNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADING   86 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHH-hcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccc
Confidence            456688999999999999983  444443332  21     22 5789999999999999874   68999999999999


Q ss_pred             CC-CCCCCHHHHHHHhcHHHHHHHHhh-cCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         103 TN-SVGRTASQMAAFVVVAVINNYIAK-SEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       103 ~~-~~G~TpL~~A~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ++ ..|.||||+|+..++.+++++|+. .|++++.          .+..|.||||+|+..|+.+++++|+..
T Consensus        87 ~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~----------~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         87 KERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEI----------LNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             cCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcc----------ccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            98 499999999999999999999997 5888743          467899999999999999999999875

>PHA02730 ankyrin-like protein; Provisional

Probab=99.78  E-value=4.3e-18  Score=179.29  Aligned_cols=130  Identities=15%  Similarity=0.088  Sum_probs=109.2

Q ss_pred             CCCchhHHHHHHhCC---HHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCC--CCCCCCCCch
Q psy2859           4 PMEGNEIFDFISKND---IDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG--NKQICQLLLDHGADV--NSGRHEHGYS   76 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~---~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~ga~v--n~~~~~~G~T   76 (534)
                      |.+|.|++|+|..++   ..++.++|+++|++++.+|..|+||||+|+..+  +.++|++|++.|+++  +. .+..+.+
T Consensus        38 d~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~-~~~~~d~  116 (672)
T PHA02730         38 DRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL-TSNINDF  116 (672)
T ss_pred             CCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc-ccccCCc
Confidence            455655555555443   467777777889999999999999999999976  799999999996654  66 6777999


Q ss_pred             HHHHHHH--cCCHHHHHHHHh-cCCCCCCCCC-----CCCCHHHHHHHhcHHHHHHHHhhcCCcee
Q psy2859          77 ALHFAAL--SGKDDVCACLLS-AGAKSYATNS-----VGRTASQMAAFVVVAVINNYIAKSEVDYY  134 (534)
Q Consensus        77 pLh~A~~--~g~~~iv~~Ll~-~ga~~~~~~~-----~G~TpL~~A~~~~~~~i~~~L~~~~~~~~  134 (534)
                      |||.++.  +++.++|++|+. .+++++...+     .|.+|+++|...+..+|+++|+++|++++
T Consensus       117 ~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~  182 (672)
T PHA02730        117 DLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYST  182 (672)
T ss_pred             hHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCccc
Confidence            9999998  899999999997 6788876633     78999999999999999999999999984

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.77  E-value=5.8e-18  Score=189.35  Aligned_cols=142  Identities=18%  Similarity=0.116  Sum_probs=120.0

Q ss_pred             CCCch-hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           4 PMEGN-EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         4 ~~~~~-~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      |.+|. +||.||..|+ ..+.++|.++|+++|.+|.+|+||||+|+..|+.+++++|++.++..+.   ..|.++||+|+
T Consensus       555 d~~G~TpLh~Aa~~g~-~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~---~~~~~~L~~Aa  630 (823)
T PLN03192        555 DSKGRTPLHIAASKGY-EDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDP---HAAGDLLCTAA  630 (823)
T ss_pred             CCCCCCHHHHHHHcCh-HHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCc---ccCchHHHHHH
Confidence            44454 4555555554 5555667778999999999999999999999999999999998877653   45779999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCC-CchHHHHHH
Q psy2859          83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPIL-AEPLHTFIM  159 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g-~t~L~~A~~  159 (534)
                      ..|+.+++++|+++|+++|.+|..|.||||+|+..|+.+++++|+++|++++..          +..| .||+.++..
T Consensus       631 ~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~----------~~~g~~t~~~l~~~  698 (823)
T PLN03192        631 KRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA----------NTDDDFSPTELREL  698 (823)
T ss_pred             HhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCC----------CCCCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998644          4444 788866644

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.76  E-value=4.8e-18  Score=188.89  Aligned_cols=182  Identities=23%  Similarity=0.252  Sum_probs=138.5

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHh-CCCCCccCCCCCCcHHH-HHHHcCCHHHHHHHHHCCCCC--------------
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSE-HKLRVDLYDEHGMTPLQ-HAAYKGNKQICQLLLDHGADV--------------   66 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~-~g~~~n~~d~~g~TpLh-~Aa~~g~~~iv~~Ll~~ga~v--------------   66 (534)
                      ++.+...++.||..|+.+.+..+|.. .+.++|..|..|+|||| .|+.+++.+++++|+++|+..              
T Consensus        14 ~~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~~~~~G~T~Lh~A~~~~   93 (743)
T TIGR00870        14 LSDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSCRGAVGDTLLHAISLEY   93 (743)
T ss_pred             CCHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCCCCCcChHHHHHHHhcc
Confidence            44556778888888888888877754 36778888888888888 777778888888888777310              


Q ss_pred             ------------------------CC---CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC--------------C
Q psy2859          67 ------------------------NS---GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATN--------------S  105 (534)
Q Consensus        67 ------------------------n~---~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~--------------~  105 (534)
                                              +.   ..+..|.||||+|+.+|+.++|++|+++|++++.++              .
T Consensus        94 ~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~  173 (743)
T TIGR00870        94 VDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFY  173 (743)
T ss_pred             HHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCccc
Confidence                                    00   012359999999999999999999999999998653              2


Q ss_pred             CCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc-----Cc----hHHHHHHhh----
Q psy2859         106 VGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV-----NI----HPVRVALNL----  172 (534)
Q Consensus       106 ~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~-----~~----~~v~~Ll~~----  172 (534)
                      .|.||||+|+..++.+++++|++.|+|++..          |..|+||||+|+..+     +.    .+.+++++.    
T Consensus       174 ~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~----------d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       174 HGESPLNAAACLGSPSIVALLSEDPADILTA----------DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             ccccHHHHHHHhCCHHHHHHHhcCCcchhhH----------hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            5899999999999999999999999988543          667889999888876     21    233333321    


Q ss_pred             ---------------CCcccccccchHHHHHHHHHhh
Q psy2859         173 ---------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       173 ---------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                                     +|++++...+...+++.+.+.+
T Consensus       244 ~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       244 RDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             CChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence                           5677777888888888887754

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0507|consensus

Probab=99.76  E-value=2e-18  Score=176.67  Aligned_cols=177  Identities=26%  Similarity=0.243  Sum_probs=161.4

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCC------------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHK------------LRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY   75 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g------------~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~   75 (534)
                      +-++.|+..||.+.+..+|...+            .++|..|.+|+|+||.|+.+|+.+++++|+++.+-++. .+..|.
T Consensus         5 qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl-~d~kg~   83 (854)
T KOG0507|consen    5 QELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDL-CDTKGI   83 (854)
T ss_pred             hhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhh-hhccCc
Confidence            45889999999999999997532            34677889999999999999999999999999999988 789999


Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHH
Q psy2859          76 SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLH  155 (534)
Q Consensus        76 TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  155 (534)
                      +|||+|++.|+.++|++||..+..+|..+..|.||||.|+..|+.+++.+|+.+|+|..          ..+..+.|+|.
T Consensus        84 ~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~----------i~nns~~t~ld  153 (854)
T KOG0507|consen   84 LPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF----------IRNNSKETVLD  153 (854)
T ss_pred             ceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc----------ccCcccccHHH
Confidence            99999999999999999999998899999999999999999999999999999999974          44778999999


Q ss_pred             HHHHhcCchHHHHHHhh--------------------CCcccccccchHHHHHHHHHhhh
Q psy2859         156 TFIMQVNIHPVRVALNL--------------------LPSLISHLPSVRKVVSLLSEKQM  195 (534)
Q Consensus       156 ~A~~~~~~~~v~~Ll~~--------------------~p~~~~~~~~~~~~~~~l~~~~~  195 (534)
                      +|++.|..++|..|++.                    +|++++...++.+++..|.+-++
T Consensus       154 lA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~  213 (854)
T KOG0507|consen  154 LASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGF  213 (854)
T ss_pred             HHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCC
Confidence            99999999999999854                    67899999999999999965444

>KOG0512|consensus

Probab=99.75  E-value=7.3e-18  Score=142.98  Aligned_cols=118  Identities=29%  Similarity=0.254  Sum_probs=105.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHH
Q psy2859          43 PLQHAAYKGNKQICQLLLDHGAD-VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAV  121 (534)
Q Consensus        43 pLh~Aa~~g~~~iv~~Ll~~ga~-vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~  121 (534)
                      -+.+|+..+.+..|+.||+..|+ ||. +|.+|+||||-|+.+||.+||+.|+..||+++.+...|+||||-||..++.+
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNt-rD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~  144 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNT-RDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFE  144 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccc-cccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchh
Confidence            36789999999999999988876 677 8999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH-HHHHHh
Q psy2859         122 INNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP-VRVALN  171 (534)
Q Consensus       122 i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~-v~~Ll~  171 (534)
                      ++.+|+++|+|++..          .....||||+|+...|... +.+|+.
T Consensus       145 va~~LLqhgaDVnA~----------t~g~ltpLhlaa~~rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  145 VAGRLLQHGADVNAQ----------TKGLLTPLHLAAGNRNSRDTLELLLH  185 (228)
T ss_pred             HHHHHHhccCccccc----------ccccchhhHHhhcccchHHHHHHHhh
Confidence            999999999999765          3446899999999877655 555543

>KOG0505|consensus

Probab=99.75  E-value=4.4e-18  Score=168.60  Aligned_cols=146  Identities=28%  Similarity=0.306  Sum_probs=127.4

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC--------------
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG--------------   69 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~--------------   69 (534)
                      ..+|.+.+|-++.-+...|+++|.++|++||..|..||||||.|+..|++.|+++|+.+||++..+              
T Consensus        70 n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~e  149 (527)
T KOG0505|consen   70 NVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDE  149 (527)
T ss_pred             CCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCc
Confidence            456767777777777777777777789999999999999999999999999999999999875542              


Q ss_pred             --------------------------------------------CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy2859          70 --------------------------------------------RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNS  105 (534)
Q Consensus        70 --------------------------------------------~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~  105 (534)
                                                                  .+..|.|.||.|+.+|..++.++|++.|.+++++|.
T Consensus       150 a~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~  229 (527)
T KOG0505|consen  150 ATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDY  229 (527)
T ss_pred             chhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccc
Confidence                                                        112389999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHH
Q psy2859         106 VGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIM  159 (534)
Q Consensus       106 ~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  159 (534)
                      +|+||||.|+..|+.++.++|+.+|++++..          ...|.||+.+|..
T Consensus       230 dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~----------t~~g~~p~dv~de  273 (527)
T KOG0505|consen  230 DGWTPLHAAAHWGQEDACELLVEHGADMDAK----------TKMGETPLDVADE  273 (527)
T ss_pred             cCCCcccHHHHhhhHhHHHHHHHhhcccchh----------hhcCCCCccchhh
Confidence            9999999999999999999999999998654          5668899988776

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.74  E-value=1.1e-17  Score=185.87  Aligned_cols=166  Identities=24%  Similarity=0.227  Sum_probs=124.3

Q ss_pred             CCCchhHHHHHHhCCHHHHHHH---HHhCCCC------Ccc----CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKL---LSEHKLR------VDL----YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR   70 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~l---L~~~g~~------~n~----~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~   70 (534)
                      +..|.+++|+|..++...+..+   +...+.+      ++.    .+..|.||||+||..|+.++|++||++||+++...
T Consensus        79 ~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~  158 (743)
T TIGR00870        79 GAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARA  158 (743)
T ss_pred             CCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence            3456666666666544443333   3332211      111    23569999999999999999999999999999631


Q ss_pred             -------------CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhc---------HHHHHHHHhh
Q psy2859          71 -------------HEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVV---------VAVINNYIAK  128 (534)
Q Consensus        71 -------------~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~---------~~~i~~~L~~  128 (534)
                                   ...|.||||+|+..|+.+++++|+++|+|++..|..|+||||+|+..+         ...+.++++.
T Consensus       159 ~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~  238 (743)
T TIGR00870       159 CGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALS  238 (743)
T ss_pred             CCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence                         135999999999999999999999999999999999999999999885         3345667776


Q ss_pred             cCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         129 SEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      .++......   ......|..|.||||+|+..|+.+++++|++.
T Consensus       239 ll~~~~~~~---el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       239 LLDKLRDSK---ELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             HHhccCChH---hhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            665532110   00133477899999999999999999999983

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195|consensus

Probab=99.72  E-value=2.1e-17  Score=151.07  Aligned_cols=129  Identities=28%  Similarity=0.341  Sum_probs=113.7

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      |-+++|+|+.++...+.+.|+..|+.+|..+....||||+|+..||.+||+.||+..+|+|+ .+..|+||||+||.-|.
T Consensus        34 gfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvna-vnehgntplhyacfwgy  112 (448)
T KOG0195|consen   34 GFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNA-VNEHGNTPLHYACFWGY  112 (448)
T ss_pred             CcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccch-hhccCCCchhhhhhhcH
Confidence            44566666666666777777777999999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeec
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIV  136 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~  136 (534)
                      ..+.+-|+..|+-+++.|+.|.|||..|--.-...+.++-.++|-+.+..
T Consensus       113 dqiaedli~~ga~v~icnk~g~tpldkakp~l~~~l~e~aek~gq~~nri  162 (448)
T KOG0195|consen  113 DQIAEDLISCGAAVNICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPNRI  162 (448)
T ss_pred             HHHHHHHHhccceeeecccCCCCchhhhchHHHHHHHHHHHHhCCCCCcc
Confidence            99999999999999999999999999988776666677777778777654

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.72  E-value=4.7e-17  Score=130.38  Aligned_cols=86  Identities=35%  Similarity=0.427  Sum_probs=52.2

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHH
Q psy2859          44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVIN  123 (534)
Q Consensus        44 Lh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~  123 (534)
                      ||+|+..|+++++++|++.+.+++.     |.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..+..+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            5666666666666666666655543     55666666666666666666666666666666666666666666666666


Q ss_pred             HHHhhcCCcee
Q psy2859         124 NYIAKSEVDYY  134 (534)
Q Consensus       124 ~~L~~~~~~~~  134 (534)
                      ++|+++|++++
T Consensus        76 ~~Ll~~g~~~~   86 (89)
T PF12796_consen   76 KLLLEHGADVN   86 (89)
T ss_dssp             HHHHHTTT-TT
T ss_pred             HHHHHcCCCCC
Confidence            66666666554

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.71  E-value=6.9e-17  Score=129.38  Aligned_cols=89  Identities=35%  Similarity=0.528  Sum_probs=80.7

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHH
Q psy2859          10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDV   89 (534)
Q Consensus        10 l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~i   89 (534)
                      |+.||..|+.+.+..++. .+.+++.    |.||||+|+..|+.+++++|+++|++++. .+..|+||||+|+..|+.++
T Consensus         1 L~~A~~~~~~~~~~~ll~-~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLE-KGADINL----GNTALHYAAENGNLEIVKLLLENGADINS-QDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHH-TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHH-CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccc-cCCCCCCHHHHHHHcCCHHH
Confidence            678999999999988888 5888876    89999999999999999999999999999 88999999999999999999


Q ss_pred             HHHHHhcCCCCCCCC
Q psy2859          90 CACLLSAGAKSYATN  104 (534)
Q Consensus        90 v~~Ll~~ga~~~~~~  104 (534)
                      +++|+++|++++.+|
T Consensus        75 ~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   75 VKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHTTT-TTSS-
T ss_pred             HHHHHHcCCCCCCcC
Confidence            999999999999875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.70  E-value=3.6e-16  Score=133.04  Aligned_cols=125  Identities=32%  Similarity=0.407  Sum_probs=112.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          35 LYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        35 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      ..|..|.||||+|+..|+.+++++|++.|++.+. .+..|.||||+|+..++.+++++|++.|++++..+..|.||+|+|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLA   80 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            3567899999999999999999999999999877 788999999999999999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHH
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVAL  170 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  170 (534)
                      +..+..+++++|+..+.+.+          ..+..|.||++.|+..++.+++++|+
T Consensus        81 ~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          81 ARNGNLDVVKLLLKHGADVN----------ARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHcCcHHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            99999999999999886653          34667889999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676|consensus

Probab=99.69  E-value=1.7e-16  Score=164.79  Aligned_cols=160  Identities=19%  Similarity=0.193  Sum_probs=132.7

Q ss_pred             CCchhHHHHHHh---CCH-HHHHHHHHhCCCCCccC----CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC------
Q psy2859           5 MEGNEIFDFISK---NDI-DNVQKLLSEHKLRVDLY----DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR------   70 (534)
Q Consensus         5 ~~~~~l~~aa~~---g~~-~~v~~lL~~~g~~~n~~----d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~------   70 (534)
                      ..|.|++|.|.-   .+. +.+..||.-..--+|..    ...|.||||+|+.+.+.++|++||+.||||+++.      
T Consensus       141 a~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~  220 (782)
T KOG3676|consen  141 ATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFC  220 (782)
T ss_pred             chhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccC
Confidence            346677766654   333 44555555444444443    3579999999999999999999999999999861      


Q ss_pred             ----------------CCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCcee
Q psy2859          71 ----------------HEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYY  134 (534)
Q Consensus        71 ----------------~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~  134 (534)
                                      -..|..||.+||-.+..++|++|+++|||++.+|..|+|.||+.+..-..++.++++..|++ .
T Consensus       221 ~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~-~  299 (782)
T KOG3676|consen  221 PDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN-A  299 (782)
T ss_pred             cccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC-c
Confidence                            12588999999999999999999999999999999999999999999999999999999999 1


Q ss_pred             eccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         135 IVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       135 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ..       ...+..|-|||.+|+..|+.++.+.+++.
T Consensus       300 l~-------~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  300 LE-------HVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cc-------cccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            11       44577899999999999999999999987

>PHA02792 ankyrin-like protein; Provisional

Probab=99.68  E-value=2.5e-16  Score=164.36  Aligned_cols=156  Identities=13%  Similarity=0.131  Sum_probs=125.7

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHH-HHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH-
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQH-AAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL-   83 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~-Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~-   83 (534)
                      +.++|+...-..+...=.+++..-|.+++..+-+|.+|+|+ |..+|++++|++|+.+|||+|. .+..|.||||+|+. 
T Consensus        37 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~s~n~~lElvk~LI~~GAdvN~-~~n~~~~~l~ya~~~  115 (631)
T PHA02792         37 GETPLKAYVTKKNNNIKNDVVILLLSSVDYKNINDFDIFEYLCSDNIDIELLKLLISKGLEINS-IKNGINIVEKYATTS  115 (631)
T ss_pred             CCccHHHHHhhhhhhHHHHHHHHHHhCCCcCccCCccHHHHHHHhcccHHHHHHHHHcCCCccc-ccCCCCcceeEeecC
Confidence            33555555555554444455555577788888888899985 5667899999999999999998 67778999999966 


Q ss_pred             cCCHHHHHHHHhcCCCCC------------------------------------CCCCCCCCHHHHHHHhc-------HH
Q psy2859          84 SGKDDVCACLLSAGAKSY------------------------------------ATNSVGRTASQMAAFVV-------VA  120 (534)
Q Consensus        84 ~g~~~iv~~Ll~~ga~~~------------------------------------~~~~~G~TpL~~A~~~~-------~~  120 (534)
                      .++.++|++||++||+++                                    ..+..|.||||+|+.++       ..
T Consensus       116 ~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~  195 (631)
T PHA02792        116 NPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSL  195 (631)
T ss_pred             CCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCH
Confidence            689999999999998743                                    33456999999999998       79


Q ss_pred             HHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc--CchHHHHHHhh
Q psy2859         121 VINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV--NIHPVRVALNL  172 (534)
Q Consensus       121 ~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~--~~~~v~~Ll~~  172 (534)
                      +++++|+.+|++++.          .|..|.||||.|+...  +.+++++|+.-
T Consensus       196 ~v~k~Li~~g~~~~~----------~d~~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        196 DVINYLISHEKEMRY----------YTYREHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             HHHHHHHhCCCCcCc----------cCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence            999999999999843          4777999999999999  88999999874

>KOG4214|consensus

Probab=99.68  E-value=1.7e-16  Score=120.36  Aligned_cols=105  Identities=26%  Similarity=0.337  Sum_probs=95.6

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .+..+.+++..|.+++|+..+.+ |.++|.. ..|+||||+||-+|.++++++|+..||+++. .|..|.|||..|+..|
T Consensus         2 ~d~~~~W~vkNG~~DeVk~~v~~-g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~-kDKygITPLLsAvwEG   78 (117)
T KOG4214|consen    2 GDMSVAWNVKNGEIDEVKQSVNE-GLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQD-KDKYGITPLLSAVWEG   78 (117)
T ss_pred             cchhHhhhhccCcHHHHHHHHHc-cccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCC-ccccCCcHHHHHHHHh
Confidence            34668889999999999999998 7888874 4899999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQM  113 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~  113 (534)
                      |.++|++||++||+-.....+|.+.+..
T Consensus        79 H~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   79 HRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             hHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            9999999999999988888888776543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.68  E-value=6.7e-16  Score=161.16  Aligned_cols=137  Identities=9%  Similarity=0.040  Sum_probs=114.8

Q ss_pred             HHHHHHhCC-HHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC--chHHHHHHHcCC
Q psy2859          10 IFDFISKND-IDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG--YSALHFAALSGK   86 (534)
Q Consensus        10 l~~aa~~g~-~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G--~TpLh~A~~~g~   86 (534)
                      |+.....+. ...+.++|.++|++++.  ..+..++|.||..|+.++|++|+++|||+|. .|.+|  .||||+|+....
T Consensus       310 l~~Yl~~~~v~ieiIK~LId~Ga~~~r--~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~-kD~~g~~~TpLh~A~~n~~  386 (631)
T PHA02792        310 LSEYVSYHTVYINVIKCMIDEGATLYR--FKHINKYFQKFDNRDPKVVEYILKNGNVVVE-DDDNIINIMPLFPTLSIHE  386 (631)
T ss_pred             HHHHHhcCCccHHHHHHHHHCCCcccc--CCcchHHHHHHHcCCHHHHHHHHHcCCchhh-hcCCCCChhHHHHHHHhcc
Confidence            344445552 45677777888999852  2366789999999999999999999999998 67664  699999887765


Q ss_pred             H---HHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHH
Q psy2859          87 D---DVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIM  159 (534)
Q Consensus        87 ~---~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  159 (534)
                      .   +++++|+++|+++|.+|..|.||||+|+..++.+++++|+.+|++++.          .+..|.|||+.|+.
T Consensus       387 ~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~----------kD~~G~TpL~~A~~  452 (631)
T PHA02792        387 SDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINI----------TTKYGSTCIGICVI  452 (631)
T ss_pred             HhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHHHH
Confidence            4   468899999999999999999999999999999999999999999854          47789999999976

>KOG4369|consensus

Probab=99.61  E-value=7.7e-16  Score=162.24  Aligned_cols=185  Identities=20%  Similarity=0.146  Sum_probs=145.9

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      ..+.+-.++.|+..++.++|+..|+++..+|..|.+||.+|+-.||..+|+.||++.+++....|..+.|+|.+||..|+
T Consensus       757 ~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr  836 (2131)
T KOG4369|consen  757 IKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGR  836 (2131)
T ss_pred             ccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCc
Confidence            34455666777777777777777999999999999999999999999999999999999999889999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCC--------------------------
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGL--------------------------  140 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~--------------------------  140 (534)
                      .++|++||..|++-..+|-..+|||-+|...|..+|+.+|+.+|+.|+......                          
T Consensus       837 ~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gs  916 (2131)
T KOG4369|consen  837 TRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGS  916 (2131)
T ss_pred             chHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccc
Confidence            999999999999999999999999999999999999999999998887653211                          


Q ss_pred             CCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHH
Q psy2859         141 ETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLS  191 (534)
Q Consensus       141 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~  191 (534)
                      +.......+.+|+|.+|+..|+.++|.+||.+            +|++-.+..+..++-.+|+
T Consensus       917 diNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li  979 (2131)
T KOG4369|consen  917 DINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLI  979 (2131)
T ss_pred             hhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhh
Confidence            00011122345666666666666666666644            5666666666666666664

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.60  E-value=2.4e-14  Score=121.68  Aligned_cols=120  Identities=36%  Similarity=0.445  Sum_probs=105.3

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++++.|+..++. .+.+.|.+.|.+.+..+..|.||||+|+..++.+++++|++.|++++. .+..|.||+|+|+..+
T Consensus         7 g~t~l~~a~~~~~~-~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~-~~~~~~~~l~~a~~~~   84 (126)
T cd00204           7 GRTPLHLAASNGHL-EVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA-RDKDGNTPLHLAARNG   84 (126)
T ss_pred             CCCHHHHHHHcCcH-HHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcC
Confidence            34555566666665 555555566888888999999999999999999999999999999988 7899999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHh
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIA  127 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~  127 (534)
                      +.+++++|+++|.+++..+..|.||+++|...+..+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999999999999999999998888888874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.54  E-value=6.3e-14  Score=132.42  Aligned_cols=123  Identities=38%  Similarity=0.444  Sum_probs=109.7

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC-----HHHHHHHHHCCC--CCCCCCCCCCchHHH
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN-----KQICQLLLDHGA--DVNSGRHEHGYSALH   79 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~-----~~iv~~Ll~~ga--~vn~~~~~~G~TpLh   79 (534)
                      ..+++.++..++...+ .++...|++++..|..|.||||+|+..|+     .+++++||+.|+  +++...+..|.||||
T Consensus        74 ~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~  152 (235)
T COG0666          74 RLPLHSAASKGDDKIV-KLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH  152 (235)
T ss_pred             cCHHHHHHHcCcHHHH-HHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhH
Confidence            4556666666666666 55556699999999999999999999999     999999999999  555547999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcC
Q psy2859          80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSE  130 (534)
Q Consensus        80 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~  130 (534)
                      +|+..|+.+++++|++.|++++..+..|.|++++|+..+...++..++..+
T Consensus       153 ~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             HHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999876

>KOG4214|consensus

Probab=99.53  E-value=4.9e-14  Score=107.06  Aligned_cols=92  Identities=21%  Similarity=0.213  Sum_probs=86.1

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHH
Q psy2859          42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAV  121 (534)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~  121 (534)
                      --+.+++.+|.++-|+-.+..|.+||.  -..|+||||+|+-.|..+++++|+..||+++.+|+.|-|||.-|+..|+..
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn~--~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~   81 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVNE--IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRD   81 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHHH--HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHH
Confidence            357899999999999999999999986  448999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCceee
Q psy2859         122 INNYIAKSEVDYYI  135 (534)
Q Consensus       122 i~~~L~~~~~~~~~  135 (534)
                      .|++|++.|++-..
T Consensus        82 cVklLL~~GAdrt~   95 (117)
T KOG4214|consen   82 CVKLLLQNGADRTI   95 (117)
T ss_pred             HHHHHHHcCcccce
Confidence            99999999999743

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.53  E-value=1.8e-13  Score=129.22  Aligned_cols=130  Identities=32%  Similarity=0.359  Sum_probs=119.1

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC-----HHHHHHHHhcCC---CCCCCC
Q psy2859          33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK-----DDVCACLLSAGA---KSYATN  104 (534)
Q Consensus        33 ~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~-----~~iv~~Ll~~ga---~~~~~~  104 (534)
                      .+..+..+.+++|.++..+...++.+|+..|++++. .+..|.||||+|+..|+     .+++++||+.|+   +.+..|
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccc-ccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            344566789999999999999999999999999988 99999999999999999     999999999999   567779


Q ss_pred             CCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhhC
Q psy2859         105 SVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLL  173 (534)
Q Consensus       105 ~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  173 (534)
                      ..|.||||+|+..|..+++.+|+..+++++..          +..|.|++++|+..++.+++..++...
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGADPNSR----------NSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCCCCccc----------ccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999997543          678999999999999999999998763

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.50  E-value=2.1e-14  Score=103.45  Aligned_cols=55  Identities=42%  Similarity=0.625  Sum_probs=21.5

Q ss_pred             HHHCC-CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          59 LLDHG-ADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        59 Ll~~g-a~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      ||++| +++|. .|..|+||||+|+..|+.++|++|++.|++++.+|..|+||||+|
T Consensus         1 LL~~~~~~~n~-~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNA-QDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT----TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCccCcCCCcC-cCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45555 55555 566666666666666666666666666666666666666666654

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.46  E-value=2.9e-13  Score=147.33  Aligned_cols=105  Identities=26%  Similarity=0.346  Sum_probs=93.7

Q ss_pred             hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHH
Q psy2859           9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD   88 (534)
Q Consensus         9 ~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~   88 (534)
                      .|++||..|+.+.+..||. .|+++|.+|..|+||||+|+..|+.++|++|+++|+++|. .|..|.||||+|+..|+.+
T Consensus        85 ~L~~aa~~G~~~~vk~LL~-~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~-~d~~G~TpLh~A~~~g~~~  162 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLT-GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTL-LDKDGKTPLELAEENGFRE  162 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCCcHH
Confidence            4778899999887765554 5999999999999999999999999999999999999999 8999999999999999999


Q ss_pred             HHHHHHhc-------CCCCCCCCCCCCCHHHHHH
Q psy2859          89 VCACLLSA-------GAKSYATNSVGRTASQMAA  115 (534)
Q Consensus        89 iv~~Ll~~-------ga~~~~~~~~G~TpL~~A~  115 (534)
                      ++++|+++       |++++..+..|.+|+..+.
T Consensus       163 iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        163 VVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            99999998       8888888888888877654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.46  E-value=1.5e-13  Score=98.49  Aligned_cols=54  Identities=50%  Similarity=0.801  Sum_probs=43.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLL   94 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll   94 (534)
                      |+||||+|+..|+.+++++|+++|+|+|. +|.+|+||||+|+.+|+.+++++||
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~-~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA-QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            68999999999999999999999999998 6889999999999999999999886

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.45  E-value=7.6e-14  Score=100.56  Aligned_cols=54  Identities=41%  Similarity=0.649  Sum_probs=33.6

Q ss_pred             HhCC-CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHH
Q psy2859          27 SEHK-LRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA   81 (534)
Q Consensus        27 ~~~g-~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A   81 (534)
                      +++| +++|..|..|+||||+||.+|+.++|++||+.|+|++. +|..|+||||+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~-~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA-KDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC-CcCCCCCHHHhC
Confidence            3445 99999999999999999999999999999999999999 999999999997

>KOG0515|consensus

Probab=99.45  E-value=3e-13  Score=133.24  Aligned_cols=117  Identities=26%  Similarity=0.411  Sum_probs=83.5

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHH
Q psy2859          10 IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDV   89 (534)
Q Consensus        10 l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~i   89 (534)
                      |+.|+..|.++.|..++.+ --|+...+..|.|+||-|+-.||.+||++||+.|+|||. .|.+||||||.|+..++..+
T Consensus       554 LLDaaLeGEldlVq~~i~e-v~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa-~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYE-VTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNA-ADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHh-hcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccC-ccCCCCchhhhhhhcCchHH
Confidence            5677777777777777766 446666677788888888888888888888888888887 77888888888888888888


Q ss_pred             HHHHHhcCCCCCCC-CCCCCCHHHHHHHh--cHHHHHHHHhh
Q psy2859          90 CACLLSAGAKSYAT-NSVGRTASQMAAFV--VVAVINNYIAK  128 (534)
Q Consensus        90 v~~Ll~~ga~~~~~-~~~G~TpL~~A~~~--~~~~i~~~L~~  128 (534)
                      ++.|++.|+-+-.. -.++.||..-.-..  |...+.+||..
T Consensus       632 ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            88888877765433 34566765554433  66666666653

>KOG3676|consensus

Probab=99.44  E-value=4.4e-13  Score=139.75  Aligned_cols=121  Identities=26%  Similarity=0.299  Sum_probs=104.5

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCC-----------------------CCCCcHHHHHHHcCCHHHHHHHHHCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYD-----------------------EHGMTPLQHAAYKGNKQICQLLLDHG   63 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d-----------------------~~g~TpLh~Aa~~g~~~iv~~Ll~~g   63 (534)
                      .++||.|+.+.|.+-| .+|.+.|+||+++-                       ..|..||-+||--++.+|+++|+++|
T Consensus       185 qSaLHiAIv~~~~~~V-~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~g  263 (782)
T KOG3676|consen  185 QSALHIAIVNRDAELV-RLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHG  263 (782)
T ss_pred             cchHHHHHHhccHHHH-HHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcC
Confidence            3455555555555555 55555599998741                       13778999999999999999999999


Q ss_pred             CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHhcHHHHHHHHhhc
Q psy2859          64 ADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK--SYATNSVGRTASQMAAFVVVAVINNYIAKS  129 (534)
Q Consensus        64 a~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~--~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~  129 (534)
                      ||+|+ +|.+|+|.||..+..-..++-.++|+.|++  ..++|..|.|||.+|+..|..+|.+.+++.
T Consensus       264 Ad~~a-qDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  264 ADPNA-QDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCc-cccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99999 999999999999999999999999999999  899999999999999999999999999987

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.44  E-value=9.7e-13  Score=143.27  Aligned_cols=86  Identities=27%  Similarity=0.334  Sum_probs=84.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHH
Q psy2859          43 PLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVI  122 (534)
Q Consensus        43 pLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i  122 (534)
                      .|+.|+..|+.++|++|++.|+++|. .|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~-~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNC-RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            58899999999999999999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhc
Q psy2859         123 NNYIAKS  129 (534)
Q Consensus       123 ~~~L~~~  129 (534)
                      +++|+.+
T Consensus       164 v~~Ll~~  170 (664)
T PTZ00322        164 VQLLSRH  170 (664)
T ss_pred             HHHHHhC
Confidence            9999998

>KOG4369|consensus

Probab=99.43  E-value=8.4e-14  Score=147.18  Aligned_cols=178  Identities=17%  Similarity=0.153  Sum_probs=117.0

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLY--DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~--d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      +.+++..|+.|++..++.+|+..|+.||.+  ...|..||++|.++||...++.||+.|-|+|.....+.+|+|-+|+..
T Consensus       857 DytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fq  936 (2131)
T KOG4369|consen  857 DYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQ  936 (2131)
T ss_pred             hcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeecccc
Confidence            344555666666666666666667666655  345666777777777777777777777777666666667777777777


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      |+.++|.+||.+.+++..+.+.|.|||+-++..|..++-++|+..|+|.+..+.        .....|+|.+++..||..
T Consensus       937 gr~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~gad~nasPv--------p~T~dtalti~a~kGh~k 1008 (2131)
T KOG4369|consen  937 GRPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAAGADTNASPV--------PNTWDTALTIPANKGHTK 1008 (2131)
T ss_pred             CcchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhcccccccCCC--------CCcCCccceeecCCCchh
Confidence            777777777777777777777777777777777777777777777777665421        223445666666666666


Q ss_pred             HHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         165 PVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       165 ~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      .|.+|++.            +++.++...+....+..|.+
T Consensus      1009 fv~~lln~~atv~v~NkkG~T~Lwla~~Gg~lss~~il~~ 1048 (2131)
T KOG4369|consen 1009 FVPKLLNGDATVRVPNKKGCTVLWLASAGGALSSCPILVS 1048 (2131)
T ss_pred             hhHHhhCCccceecccCCCCcccchhccCCccccchHHhh
Confidence            66666652            45555666666666655544

>KOG0515|consensus

Probab=99.35  E-value=2.8e-12  Score=126.57  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=101.5

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHH
Q psy2859          44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVIN  123 (534)
Q Consensus        44 Lh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~  123 (534)
                      |.-|+..|.+++|+..+..--|+.. .|..|.|+||-|+-.||++||++||++|+|+|..|.+||||||+|+..++..++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSq-pNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQ-PNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCC-CCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            3458889999999999998889988 899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHH--HhcCchHHHHHHhh
Q psy2859         124 NYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFI--MQVNIHPVRVALNL  172 (534)
Q Consensus       124 ~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~--~~~~~~~v~~Ll~~  172 (534)
                      +.|++.|+-+....         -.++.|+...+-  ..|...+..+|...
T Consensus       633 kqLVe~GaavfAsT---------lSDmeTa~eKCee~eeGY~~CsqyL~~v  674 (752)
T KOG0515|consen  633 KQLVESGAAVFAST---------LSDMETAAEKCEEMEEGYDQCSQYLYGV  674 (752)
T ss_pred             HHHHhccceEEeee---------cccccchhhhcchhhhhHHHHHHHHHHH
Confidence            99999999987642         234666665433  24666777777644

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.35  E-value=2e-12  Score=92.55  Aligned_cols=54  Identities=33%  Similarity=0.373  Sum_probs=46.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHh
Q psy2859          74 GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIA  127 (534)
Q Consensus        74 G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~  127 (534)
                      |+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999985

...

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.05  E-value=5.8e-11  Score=77.09  Aligned_cols=37  Identities=51%  Similarity=1.257  Sum_probs=33.0

Q ss_pred             cCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhc
Q psy2859         429 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC  466 (534)
Q Consensus       429 C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C  466 (534)
                      |..|++. ++.+|++|+.++|||++||..||..|+.+|
T Consensus         1 C~~C~~~-~~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKP-ALKRCSRCKSVYYCSEECQRADWPYHKFEC   37 (37)
T ss_dssp             -TTTSSC-SSEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred             CcCCCCC-cCCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence            7789986 666999999999999999999999999887

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>KOG0783|consensus

Probab=98.94  E-value=6.6e-10  Score=115.43  Aligned_cols=102  Identities=27%  Similarity=0.354  Sum_probs=89.5

Q ss_pred             hCCHHHHHHHHHhCCCC-CccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHH
Q psy2859          16 KNDIDNVQKLLSEHKLR-VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLL   94 (534)
Q Consensus        16 ~g~~~~v~~lL~~~g~~-~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll   94 (534)
                      .+....++.++.+.+.+ .|.+|..|+|+||+|+..|..++++.||++|+|++......|+||||-|+..|+++++-+||
T Consensus        27 Ks~~Nqlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL  106 (1267)
T KOG0783|consen   27 KSEPNQLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLL  106 (1267)
T ss_pred             cCChhHHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHH
Confidence            33444567777765544 58889999999999999999999999999999999955568999999999999999999999


Q ss_pred             hcCCCCCCCCCCCCCHHHHHHHh
Q psy2859          95 SAGAKSYATNSVGRTASQMAAFV  117 (534)
Q Consensus        95 ~~ga~~~~~~~~G~TpL~~A~~~  117 (534)
                      .+|+...++|++|..||.+-+..
T Consensus       107 ~~g~SL~i~Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  107 SKGRSLRIKDKEGLSPLQFLSRV  129 (1267)
T ss_pred             hcCCceEEecccCCCHHHHHhhc
Confidence            99999999999999999987763

>KOG0818|consensus

Probab=98.93  E-value=3.8e-09  Score=103.95  Aligned_cols=95  Identities=27%  Similarity=0.269  Sum_probs=86.1

Q ss_pred             cCCCCCCcH------HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC
Q psy2859          35 LYDEHGMTP------LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGR  108 (534)
Q Consensus        35 ~~d~~g~Tp------Lh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~  108 (534)
                      .+|.+|.|.      ||..+..|+.+..-.||..||++|..-...|.||||.|+..|...-+++|+-+|||++..|.+|+
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~Gm  201 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGM  201 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCC
Confidence            456666664      99999999999999999999999997778899999999999999999999999999999999999


Q ss_pred             CHHHHHHHhcHHHHHHHHhhc
Q psy2859         109 TASQMAAFVVVAVINNYIAKS  129 (534)
Q Consensus       109 TpL~~A~~~~~~~i~~~L~~~  129 (534)
                      ||+.+|-..|+.++.+-|++.
T Consensus       202 tP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  202 TPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             cHHHHHHhcCchHHHHHHHHH
Confidence            999999999998888777664

>KOG0782|consensus

Probab=98.90  E-value=4.8e-09  Score=104.67  Aligned_cols=123  Identities=27%  Similarity=0.326  Sum_probs=110.9

Q ss_pred             CCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCchHHHHHH
Q psy2859           5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD--VNSGRHEHGYSALHFAA   82 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~--vn~~~~~~G~TpLh~A~   82 (534)
                      .-+.+++.|+..+|+-.+.+.-.. |.++-.++.+..|.||+|+..|+-+||+|||++|..  ++. .+..|.|+||-|+
T Consensus       865 piseeil~av~~~D~~klqE~h~~-gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~-~de~get~lhkaa  942 (1004)
T KOG0782|consen  865 PISEEILRAVLSSDLMKLQETHLN-GGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDM-ADETGETALHKAA  942 (1004)
T ss_pred             CccHHHHHHHHhccHHHHHHHHhc-CCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHH-HhhhhhHHHHHHH
Confidence            345679999999999888887776 778888899999999999999999999999999974  344 7899999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhc
Q psy2859          83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKS  129 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~  129 (534)
                      ..++..+.++|++.|+....+|..|.||-.-|-..+..++..||...
T Consensus       943 ~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  943 CQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            99999999999999999999999999999999999999999998764

>KOG0506|consensus

Probab=98.87  E-value=2e-09  Score=105.46  Aligned_cols=97  Identities=21%  Similarity=0.258  Sum_probs=81.0

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHH
Q psy2859          37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA-GAKSYATNSVGRTASQMAA  115 (534)
Q Consensus        37 d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~G~TpL~~A~  115 (534)
                      +.++..++++|+..|++..++.+.-.|.|++. .|.+.+|+||.||..|++++|++||+. +.+++.+|..|+|||.-|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~-~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~  581 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMDLET-KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAK  581 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcccccc-cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhH
Confidence            35567788888888888888888888888888 788888888888888888888888886 7888888888888888888


Q ss_pred             HhcHHHHHHHHhhcCCcee
Q psy2859         116 FVVVAVINNYIAKSEVDYY  134 (534)
Q Consensus       116 ~~~~~~i~~~L~~~~~~~~  134 (534)
                      ..++.+++++|.+.....+
T Consensus       582 ~F~h~~v~k~L~~~~~~y~  600 (622)
T KOG0506|consen  582 HFKHKEVVKLLEEAQYPYT  600 (622)
T ss_pred             hcCcHHHHHHHHHHhcccc
Confidence            8888888888887665443

>PF13606 Ank_3: Ankyrin repeat

Probab=98.86  E-value=3.1e-09  Score=65.27  Aligned_cols=29  Identities=59%  Similarity=0.871  Sum_probs=19.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCC
Q psy2859          39 HGMTPLQHAAYKGNKQICQLLLDHGADVN   67 (534)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn   67 (534)
                      +|+||||+||..|+.++|++||++|+|+|
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36666666666666666666666666665

>PF13606 Ank_3: Ankyrin repeat

Probab=98.79  E-value=7.3e-09  Score=63.62  Aligned_cols=30  Identities=37%  Similarity=0.547  Sum_probs=27.9

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCC
Q psy2859          73 HGYSALHFAALSGKDDVCACLLSAGAKSYA  102 (534)
Q Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~  102 (534)
                      +|+||||+|+..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999874

>KOG0818|consensus

Probab=98.77  E-value=2.9e-08  Score=97.91  Aligned_cols=86  Identities=23%  Similarity=0.426  Sum_probs=78.7

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d-~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      ..||..++.|+.+....||.. |+++|..+ ..|.||||.|+..|+..-+++|+-+|||++. .|.+|+||+.+|-..||
T Consensus       135 rQLhasvRt~nlet~LRll~l-GA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a-~d~~GmtP~~~AR~~gH  212 (669)
T KOG0818|consen  135 KQLHSSVRTGNLETCLRLLSL-GAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGA-QDSSGMTPVDYARQGGH  212 (669)
T ss_pred             HHHHHHhhcccHHHHHHHHHc-ccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCC-CCCCCCcHHHHHHhcCc
Confidence            357888889999999998887 99999886 6799999999999999999999999999999 99999999999999999


Q ss_pred             HHHHHHHHh
Q psy2859          87 DDVCACLLS   95 (534)
Q Consensus        87 ~~iv~~Ll~   95 (534)
                      -++.+-|++
T Consensus       213 ~~laeRl~e  221 (669)
T KOG0818|consen  213 HELAERLVE  221 (669)
T ss_pred             hHHHHHHHH
Confidence            988887765

>KOG0506|consensus

Probab=98.75  E-value=7.9e-09  Score=101.36  Aligned_cols=88  Identities=18%  Similarity=0.256  Sum_probs=83.5

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++++||..||...++.++.+ |.|++.+|.+.+|+||+||..|+++++++||+. +.+++. .|.+|+|||--|-..+|
T Consensus       508 i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~-kDRw~rtPlDdA~~F~h  585 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDP-KDRWGRTPLDDAKHFKH  585 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCCh-hhccCCCcchHhHhcCc
Confidence            568999999999999999999 999999999999999999999999999999975 889998 89999999999999999


Q ss_pred             HHHHHHHHhcC
Q psy2859          87 DDVCACLLSAG   97 (534)
Q Consensus        87 ~~iv~~Ll~~g   97 (534)
                      .+++++|-+.-
T Consensus       586 ~~v~k~L~~~~  596 (622)
T KOG0506|consen  586 KEVVKLLEEAQ  596 (622)
T ss_pred             HHHHHHHHHHh
Confidence            99999998864

>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.74  E-value=5.2e-09  Score=67.87  Aligned_cols=37  Identities=51%  Similarity=1.257  Sum_probs=32.3

Q ss_pred             CCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhccc
Q psy2859         329 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC  366 (534)
Q Consensus       329 C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c  366 (534)
                      |..|++. .+..|++|+.++|||++||+.||..|+.+|
T Consensus         1 C~~C~~~-~~~~C~~C~~~~YCs~~Cq~~~w~~Hk~~C   37 (37)
T PF01753_consen    1 CAVCGKP-ALKRCSRCKSVYYCSEECQRADWPYHKFEC   37 (37)
T ss_dssp             -TTTSSC-SSEEETTTSSSEESSHHHHHHHHHHHCCTH
T ss_pred             CcCCCCC-cCCcCCCCCCEEecCHHHHHHHHHHHhhhC
Confidence            6778885 566999999999999999999999899876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MYND-type zinc finger domains. The MYND domain (myeloid, Nervy, and DEAF-1) is present in a large group of proteins that includes RP-8 (PDCD2), Nervy, and predicted proteins from Drosophila, mammals, Caenorhabditis elegans, yeast, and plants [, , ]. The MYND domain consists of a cluster of cysteine and histidine residues, arranged with an invariant spacing to form a potential zinc-binding motif []. Mutating conserved cysteine residues in the DEAF-1 MYND domain does not abolish DNA binding, which suggests that the MYND domain might be involved in protein-protein interactions []. Indeed, the MYND domain of ETO/MTG8 interacts directly with the N-CoR and SMRT co-repressors [, ]. Aberrant recruitment of co-repressor complexes and inappropriate transcriptional repression is believed to be a general mechanism of leukemogenesis caused by the t(8;21) translocations that fuse ETO with the acute myelogenous leukemia 1 (AML1) protein. ETO has been shown to be a co-repressor recruited by the promyelocytic leukemia zinc finger (PLZF) protein []. A divergent MYND domain present in the adenovirus E1A binding protein BS69 was also shown to interact with N-CoR and mediate transcriptional repression []. The current evidence suggests that the MYND motif in mammalian proteins constitutes a protein-protein interaction domain that functions as a co-repressor-recruiting interface. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3QWW_A 3QWV_A 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3RU0_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.72  E-value=1.8e-08  Score=63.74  Aligned_cols=29  Identities=55%  Similarity=0.886  Sum_probs=15.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDHGADVNS   68 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   68 (534)
                      |+||||+|+..|+.+++++||++|++++.
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            45555555555555555555555555554

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.69  E-value=2.5e-08  Score=63.07  Aligned_cols=33  Identities=36%  Similarity=0.574  Sum_probs=31.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy2859          73 HGYSALHFAALSGKDDVCACLLSAGAKSYATNS  105 (534)
Q Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~  105 (534)
                      +|+||||+|+..|+.+++++||++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999998874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG3609|consensus

Probab=98.63  E-value=1e-07  Score=100.73  Aligned_cols=126  Identities=19%  Similarity=0.102  Sum_probs=107.2

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHhCCC---CCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSEHKL---RVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH   79 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~~g~---~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh   79 (534)
                      ...++...+.|+..||...|++.|.+...   ++|..|.-|+++|++|+.+.+.+++++|++++..+        ..+|-
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL   93 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALL   93 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHH
Confidence            34567788999999999999999988654   78899999999999999999999999999997555        24999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCC----------CCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeec
Q psy2859          80 FAALSGKDDVCACLLSAGAKS----------YATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIV  136 (534)
Q Consensus        80 ~A~~~g~~~iv~~Ll~~ga~~----------~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~  136 (534)
                      +|+..|...+|++++.+-...          ...-..+.|||.+||..++.+|+++|+..|+.+-..
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            999999999999999873221          122245789999999999999999999999997654

>KOG2384|consensus

Probab=98.53  E-value=2e-07  Score=81.23  Aligned_cols=75  Identities=23%  Similarity=0.292  Sum_probs=67.5

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Q psy2859          30 KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG-ADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNS  105 (534)
Q Consensus        30 g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g-a~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~  105 (534)
                      +.++|++|..|||||+.|+..|+.+.|.+|+.+| ++|-. .|..|.+++.+|-..|+.++|+.|.+...+....++
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv-~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV-TDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccc-cccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            5689999999999999999999999999999999 88888 899999999999999999999999998555444433

>KOG0522|consensus

Probab=98.51  E-value=2e-07  Score=93.32  Aligned_cols=85  Identities=29%  Similarity=0.443  Sum_probs=40.4

Q ss_pred             HHHHHHhCCHHHHHHHHHh-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHH
Q psy2859          10 IFDFISKNDIDNVQKLLSE-HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD   88 (534)
Q Consensus        10 l~~aa~~g~~~~v~~lL~~-~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~   88 (534)
                      +|.++...+...+...|.. .+..++.+|..|.||||+|+.-|+.+.++.|+..||++-. .|..|++|||.|+..|+..
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~-kN~~gWs~L~EAv~~g~~q  102 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSI-KNNEGWSPLHEAVSTGNEQ  102 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccc-cccccccHHHHHHHcCCHH
Confidence            3444444444444443322 2333444455555555555555555555555555555544 4555555555555555554


Q ss_pred             HHHHHHh
Q psy2859          89 VCACLLS   95 (534)
Q Consensus        89 iv~~Ll~   95 (534)
                      ++..+|.
T Consensus       103 ~i~~vlr  109 (560)
T KOG0522|consen  103 IITEVLR  109 (560)
T ss_pred             HHHHHHH
Confidence            4444433

>KOG0705|consensus

Probab=98.51  E-value=3.3e-07  Score=92.26  Aligned_cols=60  Identities=40%  Similarity=0.552  Sum_probs=32.4

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q psy2859          38 EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA   98 (534)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga   98 (534)
                      .+|.|+||+||..|++.+.++|+=+|+|+-. +|..|+|+|.||-..|..+++.+||++|.
T Consensus       659 ~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~-rda~g~t~l~yar~a~sqec~d~llq~gc  718 (749)
T KOG0705|consen  659 GDGRTALHLAARKGNVVLAQLLIWYGVDVMA-RDAHGRTALFYARQAGSQECIDVLLQYGC  718 (749)
T ss_pred             CCCcchhhhhhhhcchhHHHHHHHhCcccee-cccCCchhhhhHhhcccHHHHHHHHHcCC
Confidence            4445555555555555555555555555555 45555555555555555555555555543

>KOG0522|consensus

Probab=98.50  E-value=3.2e-07  Score=92.00  Aligned_cols=87  Identities=24%  Similarity=0.262  Sum_probs=73.4

Q ss_pred             cHHHHHHHcCCHHHHHH-HH-HCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcH
Q psy2859          42 TPLQHAAYKGNKQICQL-LL-DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVV  119 (534)
Q Consensus        42 TpLh~Aa~~g~~~iv~~-Ll-~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~  119 (534)
                      -|||+++.....+-... |+ +.+..++. .|..|+||||+|+..|+...+++|+..||++..+|+.|++|||.|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~-~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDR-RDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceecc-ccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            46999999988765544 33 33456666 89999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHhhc
Q psy2859         120 AVINNYIAKS  129 (534)
Q Consensus       120 ~~i~~~L~~~  129 (534)
                      ..++..++.+
T Consensus       101 ~q~i~~vlr~  110 (560)
T KOG0522|consen  101 EQIITEVLRH  110 (560)
T ss_pred             HHHHHHHHHH
Confidence            8777666554

>KOG0783|consensus

Probab=98.48  E-value=8.4e-08  Score=100.18  Aligned_cols=84  Identities=21%  Similarity=0.212  Sum_probs=76.4

Q ss_pred             CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCC
Q psy2859          66 VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNS-VGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTP  144 (534)
Q Consensus        66 vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~-~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~  144 (534)
                      .|. .|..|+|+||+|+..+..+++++||++|++++.+|. .|+||||-|+..|+.+.+.+|+.+|+...+.        
T Consensus        45 ani-kD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~--------  115 (1267)
T KOG0783|consen   45 ANI-KDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIK--------  115 (1267)
T ss_pred             hhH-HHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEe--------
Confidence            444 799999999999999999999999999999999997 7999999999999999999999999998654        


Q ss_pred             CCCCCCCchHHHHHHh
Q psy2859         145 KLDPILAEPLHTFIMQ  160 (534)
Q Consensus       145 ~~~~~g~t~L~~A~~~  160 (534)
                        |..|.+||....+.
T Consensus       116 --Dkeglsplq~~~r~  129 (1267)
T KOG0783|consen  116 --DKEGLSPLQFLSRV  129 (1267)
T ss_pred             --cccCCCHHHHHhhc
Confidence              88899999776663

>KOG0782|consensus

Probab=98.46  E-value=4.9e-07  Score=90.66  Aligned_cols=118  Identities=16%  Similarity=0.120  Sum_probs=103.0

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC--CCCCCCCCCCHHHHHHHhcHHH
Q psy2859          44 LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK--SYATNSVGRTASQMAAFVVVAV  121 (534)
Q Consensus        44 Lh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~--~~~~~~~G~TpL~~A~~~~~~~  121 (534)
                      |..|+..+++--++.+...|-++.. ++.+-.|.||+|+..|+-+||++||++|..  .++.+..|.|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~-~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLI-QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEe-eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            5667777776666666777888877 889999999999999999999999999875  6778899999999999999999


Q ss_pred             HHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         122 INNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       122 i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +..+|.+.|+..          ...|..|.||-..|-..|+.++..||-+.
T Consensus       949 vc~~lvdagasl----------~ktd~kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  949 VCQLLVDAGASL----------RKTDSKGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             HHHHHHhcchhh----------eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999997          34588899999999999999999888654

>KOG0705|consensus

Probab=98.40  E-value=6.5e-07  Score=90.21  Aligned_cols=90  Identities=28%  Similarity=0.250  Sum_probs=79.6

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCC--CCC-CCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHH
Q psy2859          44 LQHAAYKGNKQICQLLLDHGAD--VNS-GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVA  120 (534)
Q Consensus        44 Lh~Aa~~g~~~iv~~Ll~~ga~--vn~-~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~  120 (534)
                      |.-|+...++..+-+||.+|..  +|- ..+.+|.|+||+||..|++.+.++|+-+|+|+..+|..|+|+|.||-..|.-
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            6678888889999999999864  332 1456789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCce
Q psy2859         121 VINNYIAKSEVDY  133 (534)
Q Consensus       121 ~i~~~L~~~~~~~  133 (534)
                      +++.+|+++|.--
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999998653

>KOG0521|consensus

Probab=98.36  E-value=4.7e-07  Score=98.68  Aligned_cols=99  Identities=27%  Similarity=0.287  Sum_probs=86.1

Q ss_pred             CCCCccC--CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCC
Q psy2859          30 KLRVDLY--DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVG  107 (534)
Q Consensus        30 g~~~n~~--d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G  107 (534)
                      ++++|..  -..|.|+||.|+..|..-++++||+.|+++|. .|..|+||||.+...|+...+.+|+++|++.+..+.+|
T Consensus       644 ~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~-~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~  722 (785)
T KOG0521|consen  644 GCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNA-LDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDG  722 (785)
T ss_pred             hhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchh-hhccCCCcchhhhhhcccchhhhhccccccccccCccC
Confidence            4444432  24578999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHhcHHHHHHHHhhc
Q psy2859         108 RTASQMAAFVVVAVINNYIAKS  129 (534)
Q Consensus       108 ~TpL~~A~~~~~~~i~~~L~~~  129 (534)
                      .+||++|....+.+++-++.-.
T Consensus       723 ~~~l~~a~~~~~~d~~~l~~l~  744 (785)
T KOG0521|consen  723 KLPLDIAMEAANADIVLLLRLA  744 (785)
T ss_pred             cchhhHHhhhccccHHHHHhhh
Confidence            9999999877666665555443

>KOG0511|consensus

Probab=98.19  E-value=3.8e-06  Score=80.70  Aligned_cols=85  Identities=25%  Similarity=0.316  Sum_probs=68.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHH
Q psy2859          41 MTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVA  120 (534)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~  120 (534)
                      .--|..||..|+.+.|++|++.|.+||. .|.+.++||.+|+..||.++|++||++||--..-..+|.-.+ +++.+  .
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~-vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~-YgaLn--d  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNA-VDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH-YGALN--D  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcch-hhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh-hhhhh--H
Confidence            3468999999999999999999999999 899999999999999999999999999997665556776663 44433  2


Q ss_pred             HHHHHHhhc
Q psy2859         121 VINNYIAKS  129 (534)
Q Consensus       121 ~i~~~L~~~  129 (534)
                      .|-+.|+..
T Consensus       113 ~IR~mllsy  121 (516)
T KOG0511|consen  113 RIRRMLLSY  121 (516)
T ss_pred             HHHHHHHHH
Confidence            344444443

>KOG3609|consensus

Probab=98.08  E-value=1.4e-05  Score=85.07  Aligned_cols=126  Identities=18%  Similarity=0.112  Sum_probs=100.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          39 HGMTPLQHAAYKGNKQICQLLLDHG----ADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~g----a~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      .+.--...|+..|+...|+..++..    .++|. .|.-|.++|++|..+.+.+++++|++++...       ..+|.+|
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc-~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~a   95 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINC-RDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLA   95 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhc-cChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHH
Confidence            3445678899999999999999653    46777 8999999999999999999999999987654       4689999


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +..+...+|++++.+.................-.-+.|||.+|+..+|+||+++||..
T Consensus        96 I~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen   96 IAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             HHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            9999999999999876654332221111112233478999999999999999999965

>KOG0520|consensus

Probab=97.97  E-value=9.8e-06  Score=87.99  Aligned_cols=132  Identities=12%  Similarity=-0.028  Sum_probs=104.6

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHH
Q psy2859          35 LYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHGYSALHFAALSGKDDVCACLL-SAGAKSYATNSVGRTASQ  112 (534)
Q Consensus        35 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll-~~ga~~~~~~~~G~TpL~  112 (534)
                      ...-.|+|-||+++..++.-.++.+++- |-..+. .+.+|.-.+|+ |..++++.+-+|+ -.|..++++|..|+||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCchh-hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            3456799999999999999999999985 554444 57777778888 4455556555554 458889999999999999


Q ss_pred             HHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         113 MAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       113 ~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +|+..|+..++..|+..|++.......    ......|.|+-.+|-..|+..+..+|-+.
T Consensus       647 wAa~~G~e~l~a~l~~lga~~~~~tdp----s~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIELGADPGAVTDP----SPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             hHhhcCHHHHHHHHHHhccccccccCC----CCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999999998886543222    23355699999999999999999888766

>KOG2384|consensus

Probab=97.97  E-value=1.5e-05  Score=69.79  Aligned_cols=66  Identities=24%  Similarity=0.327  Sum_probs=62.6

Q ss_pred             CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhc
Q psy2859          63 GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAG-AKSYATNSVGRTASQMAAFVVVAVINNYIAKS  129 (534)
Q Consensus        63 ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~g-a~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~  129 (534)
                      +.++|. +|..|+||||.|+..|..+.|.+|+.+| +.+...|..|.+++.+|-..|..+++..|.+.
T Consensus         2 e~~in~-rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    2 EGNINA-RDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCCccc-hhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            457888 8999999999999999999999999999 88999999999999999999999999999886

>KOG0520|consensus

Probab=97.97  E-value=8.9e-06  Score=88.31  Aligned_cols=125  Identities=18%  Similarity=0.260  Sum_probs=95.7

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHh-CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCchHHHH
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSE-HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL-DHGADVNSGRHEHGYSALHF   80 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~-~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll-~~ga~vn~~~~~~G~TpLh~   80 (534)
                      ....|.+++|.++.-....+..-+.+ .|...+..|.+|.-.+|++|. ++.+.+-+|+ -.|..++. +|..|+|||||
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~ai~i-~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGVAIDI-RDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhHhhh-cCCceeEEEEeeccccccc-ccCCCCcccch
Confidence            34567777777777777766665555 366677778888889999554 5555554444 56888998 89999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCC------CCCCCCCCHHHHHHHhcHHHHHHHHhhc
Q psy2859          81 AALSGKDDVCACLLSAGAKSY------ATNSVGRTASQMAAFVVVAVINNYIAKS  129 (534)
Q Consensus        81 A~~~g~~~iv~~Ll~~ga~~~------~~~~~G~TpL~~A~~~~~~~i~~~L~~~  129 (534)
                      |+.+|+..++..|++.|++.+      ..+-.|.|+-.+|..+|+..+..+|-+.
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            999999999999998877543      2334699999999998888888887764

>KOG0521|consensus

Probab=97.92  E-value=9.5e-06  Score=88.66  Aligned_cols=87  Identities=29%  Similarity=0.389  Sum_probs=76.5

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      |.+++|-+..++...+.++|+++|+++|.+|..|.||||.+...|+...+..|+++||+.++ .+..|.+||++|....+
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a-~~~~~~~~l~~a~~~~~  734 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNA-FDPDGKLPLDIAMEAAN  734 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccc-cCccCcchhhHHhhhcc
Confidence            46677777777777888888888999999999999999999999999999999999999999 89999999999987777


Q ss_pred             HHHHHHHH
Q psy2859          87 DDVCACLL   94 (534)
Q Consensus        87 ~~iv~~Ll   94 (534)
                      .+++-+|.
T Consensus       735 ~d~~~l~~  742 (785)
T KOG0521|consen  735 ADIVLLLR  742 (785)
T ss_pred             ccHHHHHh
Confidence            66665443

>KOG0511|consensus

Probab=97.80  E-value=9e-05  Score=71.52  Aligned_cols=85  Identities=27%  Similarity=0.393  Sum_probs=67.2

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      ...+..|++.|+.+.|+.|+. .|++||.+|....+||.+|+..||.++|++||++||--.. -...|.. -|+++.+. 
T Consensus        37 f~elceacR~GD~d~v~~LVe-tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~r-dtf~G~R-C~YgaLnd-  112 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVE-TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSR-DTFDGDR-CHYGALND-  112 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHH-hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccc-cccCcch-hhhhhhhH-
Confidence            345889999999999999888 5999999999999999999999999999999999986654 3344544 35555543 


Q ss_pred             HHHHHHHHhc
Q psy2859          87 DDVCACLLSA   96 (534)
Q Consensus        87 ~~iv~~Ll~~   96 (534)
                       .|-++||..
T Consensus       113 -~IR~mllsy  121 (516)
T KOG0511|consen  113 -RIRRMLLSY  121 (516)
T ss_pred             -HHHHHHHHH
Confidence             344455554

>smart00248 ANK ankyrin repeats

Probab=97.06  E-value=0.0011  Score=39.18  Aligned_cols=27  Identities=56%  Similarity=0.863  Sum_probs=15.0

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCC
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDHGADV   66 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~ga~v   66 (534)
                      |.||||+|+..++.+++++|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            455555555555555555555555544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=97.02  E-value=0.0012  Score=66.16  Aligned_cols=65  Identities=20%  Similarity=0.221  Sum_probs=56.3

Q ss_pred             HHHHHHHHHCCCCCCCC-----CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHh
Q psy2859          53 KQICQLLLDHGADVNSG-----RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV  117 (534)
Q Consensus        53 ~~iv~~Ll~~ga~vn~~-----~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~  117 (534)
                      ...+++|.+++++.|..     .+....|+||+|+..|...+|.+||+.|+|+.++|..|+||..++...
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~nk  473 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSANK  473 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccccH
Confidence            56889999999888753     234577999999999999999999999999999999999999988743

>KOG3612|consensus

Probab=97.01  E-value=0.00031  Score=71.04  Aligned_cols=41  Identities=44%  Similarity=0.983  Sum_probs=36.9

Q ss_pred             cCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhccccCCC
Q psy2859         429 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS  472 (534)
Q Consensus       429 C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~~~  472 (534)
                      |++|.+. +...|  |-...|||-+||..||..|++.|+.....
T Consensus       530 C~nC~~E-Aiy~C--CWNTSYCsveCQQ~HW~~H~ksCrrk~~~  570 (588)
T KOG3612|consen  530 CYNCLDE-AIYHC--CWNTSYCSVECQQGHWPEHRKSCRRKKTN  570 (588)
T ss_pred             HHhhhHH-HHHHh--hccccccCcchhhccchhHhhhhcccCCC
Confidence            9999997 88888  99999999999999999999999966544

>smart00248 ANK ankyrin repeats

Probab=96.97  E-value=0.0013  Score=38.84  Aligned_cols=29  Identities=38%  Similarity=0.505  Sum_probs=25.5

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy2859          73 HGYSALHFAALSGKDDVCACLLSAGAKSY  101 (534)
Q Consensus        73 ~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~  101 (534)
                      .|.||||+|+..++.+++++|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505|consensus

Probab=96.96  E-value=0.0017  Score=65.21  Aligned_cols=80  Identities=21%  Similarity=0.292  Sum_probs=64.2

Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCCccC------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859          11 FDFISKNDIDNVQKLLSEHKLRVDLY------DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus        11 ~~aa~~g~~~~v~~lL~~~g~~~n~~------d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      ......+.....+..|.+++++.|..      +..-.|+||+|+..|.-++|.+||+.|+|+-. .|..|.||.+++.  
T Consensus       395 ~s~lkk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~-kd~~Grtpy~ls~--  471 (591)
T KOG2505|consen  395 ISRLKKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPST-KDGAGRTPYSLSA--  471 (591)
T ss_pred             HHHHhccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchh-cccCCCCcccccc--
Confidence            33445666677888888888887653      44567999999999999999999999999998 8999999999988  


Q ss_pred             CCHHHHHHHH
Q psy2859          85 GKDDVCACLL   94 (534)
Q Consensus        85 g~~~iv~~Ll   94 (534)
                       +.+|-..++
T Consensus       472 -nkdVk~~F~  480 (591)
T KOG2505|consen  472 -NKDVKSIFI  480 (591)
T ss_pred             -cHHHHHHHH
Confidence             445544444

>KOG3612|consensus

Probab=96.61  E-value=0.00051  Score=69.57  Aligned_cols=44  Identities=41%  Similarity=0.879  Sum_probs=37.6

Q ss_pred             CCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhcccCCCCCC
Q psy2859         326 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS  372 (534)
Q Consensus       326 ~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~~~~  372 (534)
                      +.-|++|..+ +...|  |....||+.+||+.||+.|++.|++-...
T Consensus       527 KQWC~nC~~E-Aiy~C--CWNTSYCsveCQQ~HW~~H~ksCrrk~~~  570 (588)
T KOG3612|consen  527 KQWCYNCLDE-AIYHC--CWNTSYCSVECQQGHWPEHRKSCRRKKTN  570 (588)
T ss_pred             HHHHHhhhHH-HHHHh--hccccccCcchhhccchhHhhhhcccCCC
Confidence            3469999987 77777  78999999999999999999999865444

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=95.82  E-value=0.0077  Score=41.87  Aligned_cols=43  Identities=21%  Similarity=0.544  Sum_probs=34.4

Q ss_pred             cCCCCCC---CCcccCCCCCCCccCChhhHHhhHHHhHHhccccCC
Q psy2859         429 CVTCGEE---NATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP  471 (534)
Q Consensus       429 C~~C~~~---~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~~  471 (534)
                      |..|+..   .....|+.|+++.|||++.=..|...|+..|..+..
T Consensus         2 Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRq   47 (55)
T PF13824_consen    2 CPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQ   47 (55)
T ss_pred             CCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHH
Confidence            6666662   145789999999999999888888889999987654

>KOG2857|consensus

Probab=94.76  E-value=0.034  Score=46.26  Aligned_cols=34  Identities=47%  Similarity=0.984  Sum_probs=29.7

Q ss_pred             CcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHH
Q psy2859         426 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKK  464 (534)
Q Consensus       426 ~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~  464 (534)
                      +..|..|.+.....+|+.|... |||-.|    |+.||.
T Consensus         5 t~tC~ic~e~~~KYKCpkC~vP-YCSl~C----fKiHk~   38 (157)
T KOG2857|consen    5 TTTCVICLESEIKYKCPKCSVP-YCSLPC----FKIHKS   38 (157)
T ss_pred             eeeehhhhcchhhccCCCCCCc-cccchh----hhhccC
Confidence            3579999998668999999987 999998    899988

>PLN03158 methionine aminopeptidase; Provisional

Probab=94.12  E-value=0.041  Score=56.18  Aligned_cols=39  Identities=28%  Similarity=0.830  Sum_probs=32.4

Q ss_pred             CcccCCCCCCCCcccCCCCCC-------CccCChhhHHhhHHHhHHh
Q psy2859         426 TTPCVTCGEENATKKCAKCKT-------TRYCDRECQRLHWFIHKKE  465 (534)
Q Consensus       426 ~~~C~~C~~~~~~~~C~~C~~-------~~yc~~~cq~~~w~~h~~~  465 (534)
                      ...|.+|++. +...|..|..       .++||++|=+..|+.||..
T Consensus         9 ~~~c~~c~~~-a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~   54 (396)
T PLN03158          9 PLACARCSKP-AHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSV   54 (396)
T ss_pred             cccccCCCCc-ccccCccchhcCCCCCCceeECHHHHHHHHHHHHHH
Confidence            3469999997 5688888864       5799999999999998775

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.84  E-value=0.27  Score=44.94  Aligned_cols=114  Identities=12%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCC----CCCCCCCCCCCchHHHHHHH-
Q psy2859           9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG----ADVNSGRHEHGYSALHFAAL-   83 (534)
Q Consensus         9 ~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g----a~vn~~~~~~G~TpLh~A~~-   83 (534)
                      .+-.|+..-|.+.+..++...        ..-.++|-+|..++..+++-+||..-    -|+-  .-..+..-+-++.. 
T Consensus       156 sledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f~ft~~dv~--~~~~~~ydieY~LS~  225 (284)
T PF06128_consen  156 SLEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKFNFTKQDVA--SMEKELYDIEYLLSE  225 (284)
T ss_pred             cHHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhcceecchhh--hcCcchhhHHHHHhh
Confidence            455677777777777666442        23457899999899999999999752    1222  12234444555543 


Q ss_pred             -cCCHHHHHHHHhcC-CCCCC---CCCCCCCHHHHHHHhcHHHHHHHHhhcCCc
Q psy2859          84 -SGKDDVCACLLSAG-AKSYA---TNSVGRTASQMAAFVVVAVINNYIAKSEVD  132 (534)
Q Consensus        84 -~g~~~iv~~Ll~~g-a~~~~---~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~  132 (534)
                       ..+..|++++|++| +++|.   +-+.|.|-|.-|...+..+++.+|+++|+-
T Consensus       226 h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  226 HSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             cCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence             34678999999998 56664   456899999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.44  E-value=0.03  Score=33.98  Aligned_cols=28  Identities=32%  Similarity=1.010  Sum_probs=21.5

Q ss_pred             cccCCCCCCCCcccCCCCCCCccCChhhHH
Q psy2859         427 TPCVTCGEENATKKCAKCKTTRYCDRECQR  456 (534)
Q Consensus       427 ~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~  456 (534)
                      ..|..|+. .+..+|.+|... |||-.|-+
T Consensus         3 ~~C~vC~~-~~kY~Cp~C~~~-~CSl~C~k   30 (30)
T PF04438_consen    3 KLCSVCGN-PAKYRCPRCGAR-YCSLACYK   30 (30)
T ss_dssp             EEETSSSS-EESEE-TTT--E-ESSHHHHH
T ss_pred             CCCccCcC-CCEEECCCcCCc-eeCcEeEC
Confidence            46999999 588999999988 99999853

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the HIT-type zinc finger, which contains 7 conserved cysteines and one histidine that can potentially coordinate two zinc atoms. It has been named after the first protein that originally defined the domain: the yeast HIT1 protein (P46973 from SWISSPROT) []. The HIT-type zinc finger displays some sequence similarities to the MYND-type zinc finger. The function of this domain is unknown but it is mainly found in nuclear proteins involved in gene regulation and chromatin remodeling. This domain is also found in the thyroid receptor interacting protein 3 (TRIP-3) Q15649 from SWISSPROT, that specifically interacts with the ligand binding domain of the thyroid receptor. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2YQP_A 2YQQ_A 1X4S_A.

>PF13824 zf-Mss51: Zinc-finger of mitochondrial splicing suppressor 51

Probab=92.22  E-value=0.15  Score=35.60  Aligned_cols=43  Identities=21%  Similarity=0.512  Sum_probs=34.0

Q ss_pred             CCCCCCCC---CCCCCCCCCceeeCChhHHHHhhhhhhcccCCCCC
Q psy2859         329 CVTCGEEN---ATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP  371 (534)
Q Consensus       329 C~~c~~~~---~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~~~  371 (534)
                      |..|+...   ....|..|....|||+++-..|.+.|++.|..+.+
T Consensus         2 Cpv~~~~~~~~v~~~Cp~cGipthcS~ehw~~D~e~H~~~c~~LRq   47 (55)
T PF13824_consen    2 CPVCKKDLPAHVNFECPDCGIPTHCSEEHWEDDYEEHRQLCERLRQ   47 (55)
T ss_pred             CCCCccccccccCCcCCCCCCcCccCHHHHHHhHHHHHHHHHHHHH
Confidence            55666521   35679999999999999999999999999975544

>KOG2061|consensus

Probab=91.57  E-value=0.087  Score=51.68  Aligned_cols=47  Identities=34%  Similarity=0.810  Sum_probs=41.4

Q ss_pred             CcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHH-hHHhccccCCCC
Q psy2859         426 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFI-HKKECARSGPSA  473 (534)
Q Consensus       426 ~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~-h~~~C~~~~~~~  473 (534)
                      ...|..|+.. +.+.|++|+.+.|||+.+|..||.. |+..|.+.+...
T Consensus       136 ~~~~~~~~~~-a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~  183 (362)
T KOG2061|consen  136 ADLCGSCGCS-APAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLG  183 (362)
T ss_pred             cchhccCccc-CcccccccchhhhcCchhhcccccccccccccCccccc
Confidence            3579999998 8999999999999999999999987 999998765443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=89.76  E-value=2.6  Score=38.78  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=60.5

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCccCC----CCCCcHHHHHHHc--CCHHHHHHHHHCC-CCCCCC--CCCCCchHHHH
Q psy2859          10 IFDFISKNDIDNVQKLLSEHKLRVDLYD----EHGMTPLQHAAYK--GNKQICQLLLDHG-ADVNSG--RHEHGYSALHF   80 (534)
Q Consensus        10 l~~aa~~g~~~~v~~lL~~~g~~~n~~d----~~g~TpLh~Aa~~--g~~~iv~~Ll~~g-a~vn~~--~~~~G~TpLh~   80 (534)
                      ++..+..+..+.|..+|.. ..+....|    ..+.--+-++...  .+..++++.|++| ++||..  .-..|.|-|--
T Consensus       182 Am~~si~~~K~dva~~lls-~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDN  260 (284)
T PF06128_consen  182 AMWLSIGNAKEDVALYLLS-KFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDN  260 (284)
T ss_pred             HHHHHhcccHHHHHHHHHh-hcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHh
Confidence            3444445555666655554 23333322    2233445555554  5678999999998 577753  34579999999


Q ss_pred             HHHcCCHHHHHHHHhcCCC
Q psy2859          81 AALSGKDDVCACLLSAGAK   99 (534)
Q Consensus        81 A~~~g~~~iv~~Ll~~ga~   99 (534)
                      |...++.+++.+||++||-
T Consensus       261 A~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  261 AMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHhcCcHHHHHHHHHcCcc
Confidence            9999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=89.56  E-value=0.65  Score=35.32  Aligned_cols=46  Identities=22%  Similarity=0.346  Sum_probs=27.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc
Q psy2859          43 PLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA   96 (534)
Q Consensus        43 pLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~   96 (534)
                      -|..|+.+|+.+|++.+++.+ .++       ...|..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~-------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD-------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH-------HHHHHHHHHHhhHHHHHHHHHh
Confidence            456666666666666666544 221       2356666666666666666664

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>KOG3362|consensus

Probab=88.71  E-value=0.22  Score=41.71  Aligned_cols=35  Identities=31%  Similarity=0.836  Sum_probs=28.4

Q ss_pred             CCCCCcccCCCCCCCCcccCCCCCCCccCChhhHHhh
Q psy2859         422 FADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLH  458 (534)
Q Consensus       422 ~~~~~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~  458 (534)
                      ..+....|+.||-+ ....|..|+.- |||..|-..|
T Consensus       114 ~KP~r~fCaVCG~~-S~ysC~~CG~k-yCsv~C~~~H  148 (156)
T KOG3362|consen  114 FKPLRKFCAVCGYD-SKYSCVNCGTK-YCSVRCLKTH  148 (156)
T ss_pred             CCCcchhhhhcCCC-chhHHHhcCCc-eeechhhhhc
Confidence            34556789999976 88999999965 9999997655

>PLN03158 methionine aminopeptidase; Provisional

Probab=87.54  E-value=0.45  Score=48.68  Aligned_cols=43  Identities=26%  Similarity=0.752  Sum_probs=34.3

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCCc-------eeeCChhHHHHhhhhhhcccC
Q psy2859         324 DDTTPCVTCGEENATKKCAKCKT-------TRYCDRECQRLHWFIHKKECA  367 (534)
Q Consensus       324 ~~~~~C~~c~~~~~~~~c~~c~~-------~~yc~~~cq~~~~~~h~~~c~  367 (534)
                      +....|..|++. +.+.|..|..       .++||++|=+..|..||..-.
T Consensus         7 ~~~~~c~~c~~~-a~l~Cp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~   56 (396)
T PLN03158          7 TSPLACARCSKP-AHLQCPKCLELKLPREGASFCSQDCFKAAWSSHKSVHT   56 (396)
T ss_pred             CCcccccCCCCc-ccccCccchhcCCCCCCceeECHHHHHHHHHHHHHHHH
Confidence            335569999987 5688888853       679999999999999987653

>KOG3362|consensus

Probab=86.68  E-value=0.32  Score=40.78  Aligned_cols=41  Identities=27%  Similarity=0.658  Sum_probs=32.4

Q ss_pred             cCCCCCCCCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhh
Q psy2859         318 GHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWF  360 (534)
Q Consensus       318 ~~~~~~~~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~  360 (534)
                      ..+++.+...+|+.||-. +...|..|..- ||+..|...|..
T Consensus       110 a~p~~KP~r~fCaVCG~~-S~ysC~~CG~k-yCsv~C~~~Hne  150 (156)
T KOG3362|consen  110 AKPSFKPLRKFCAVCGYD-SKYSCVNCGTK-YCSVRCLKTHNE  150 (156)
T ss_pred             cCCCCCCcchhhhhcCCC-chhHHHhcCCc-eeechhhhhccc
Confidence            345566777899999965 78889888764 999999987765

>KOG4317|consensus

Probab=84.90  E-value=0.32  Score=46.36  Aligned_cols=36  Identities=31%  Similarity=0.905  Sum_probs=29.1

Q ss_pred             cccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhcc
Q psy2859         427 TPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECA  467 (534)
Q Consensus       427 ~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~  467 (534)
                      -.|..|+......+|.||... |||-.|    ++.|+..|.
T Consensus         8 ~~C~ic~vq~~~YtCPRCn~~-YCsl~C----Yr~h~~~Cs   43 (383)
T KOG4317|consen    8 LACGICGVQKREYTCPRCNLL-YCSLKC----YRNHKHSCS   43 (383)
T ss_pred             eeccccccccccccCCCCCcc-ceeeee----ecCCCccch
Confidence            369999988777999999987 999888    456666674

>KOG2061|consensus

Probab=84.12  E-value=0.64  Score=45.82  Aligned_cols=49  Identities=33%  Similarity=0.771  Sum_probs=42.0

Q ss_pred             CCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhh-hhcccCCCCCCCCC
Q psy2859         326 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFI-HKKECARSGPSAQP  375 (534)
Q Consensus       326 ~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~-h~~~c~~~~~~~~~  375 (534)
                      +..|..|+.. +...|.+|+...|||..+|..||+. |+..|.+.......
T Consensus       136 ~~~~~~~~~~-a~~~~~~~~~a~~~S~~~q~~d~~~~~~~a~aq~~~~~~~  185 (362)
T KOG2061|consen  136 ADLCGSCGCS-APAACSPCKAAAYCSKKHQSLDWPKGHKDACAQPSTLGEI  185 (362)
T ss_pred             cchhccCccc-CcccccccchhhhcCchhhcccccccccccccCccccccc
Confidence            4679999988 8999999999999999999999999 99999865544333

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=82.73  E-value=6.9  Score=34.96  Aligned_cols=45  Identities=20%  Similarity=0.050  Sum_probs=39.1

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhh
Q psy2859          78 LHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAK  128 (534)
Q Consensus        78 Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~  128 (534)
                      |..|+..|-...|...|++|.+++.      ++|..|+..++..|..+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            6789999999999999999988763      79999999999999888764

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	534
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		6e-11
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		1e-10
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-10
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-10
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-10
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		3e-10
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-10
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		8e-10
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-09
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		2e-09
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-09
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		5e-09
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		6e-09
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		6e-09
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		6e-09
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		6e-09
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		7e-09
2xee_A	157	Structural Determinants For Improved Thermal Stabil		7e-09
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		7e-09
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-08
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-08
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-08
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-08
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		4e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		5e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		7e-08
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		2e-07
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		3e-07
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		7e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-06
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		4e-06
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		5e-06
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-06
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		5e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		5e-06
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		7e-06
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		9e-06
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		1e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		2e-05
1uoh_A	226	Human Gankyrin Length = 226		5e-05
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-05
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		7e-05
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-04
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		1e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		1e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-04
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		2e-04
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-04
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		2e-04
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-04
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		2e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-04
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		3e-04
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		4e-04
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		8e-04

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 52/97 (53%), Gaps = 1/97 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D++G+TPL  AA  G  +I ++LL +GADVN+     G + LH
Sbjct: 19  DDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVNAS-DSAGITPLH 77
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            AA  G  ++   LL  GA   A +  G T   +AA 
Sbjct: 78  LAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAAL 114

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/101 (40%), Positives = 60/101 (59%), Gaps = 1/101 (0%)
Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++N    V KLL E    V+  D++G TPL  AA  G+ ++ +LLL+ GADVN+ + ++G
Sbjct: 10  ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNG 68
Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            + LH AA +G  +V   LL AGA   A +  GRT   +AA
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 109

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 61/109 (55%), Gaps = 2/109 (1%)
Query: 7   GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           G  + +     + D V+ L+ E+   V+  D  G TPL +AA +G+K+I +LL+  GADV
Sbjct: 5   GKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADV 63
Query: 67  NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           N+ +   G + LH+AA  G  ++   L+S GA   A +S GRT    AA
Sbjct: 64  NA-KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA 111

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 60/109 (55%), Gaps = 2/109 (1%)
Query: 7   GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           G  + +     + D V+ L+ E+   V+  D  G TPL HAA  G+K++ +LL+  GADV
Sbjct: 5   GKRLIEAAENGNKDRVKDLI-ENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV 63
Query: 67  NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           N+ +   G + LH AA +G  +V   L+S GA   A +S GRT    AA
Sbjct: 64  NA-KDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAA 111

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G TPL  AA  G+ +I ++LL +GADVN+  + +G + LH
Sbjct: 27  DDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDN-YGATPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            AA +G  ++   LL  GA   A +  G T   +AA+
Sbjct: 86  LAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAY 122

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 57/96 (59%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+ +D+ G TPL  AA+ G+ +I ++LL HGADVN+ R   G++ LH
Sbjct: 27  DDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNA-RDTDGWTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA +G  ++   LL  GA   A ++ G T   +AA
Sbjct: 86  LAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D+ G TPL  AA KG+ +I ++LL HGADVN+   + G + LH
Sbjct: 27  DDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA-DKMGDTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AAL G  ++   LL  GA   AT++ G T   +AA
Sbjct: 86  LAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G+TPL      G+ +I ++LL + ADVN+   + G++ LH
Sbjct: 27  DDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNAS-DKSGWTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  ++   LL  GA   A +  G T   +AA
Sbjct: 86  LAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA 121

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 7   GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           G  + +     + D V+ LL E+    +  D  G TPL +AA  G+K+I +LLL  GAD 
Sbjct: 5   GKRLIEAAENGNKDRVKDLL-ENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADP 63
Query: 67  NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           N+ +   G + LH+AA +G  ++   LLS GA   A +S GRT    AA
Sbjct: 64  NA-KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G TPL  AAY G+ +I ++LL HGADV++     GY+ LH
Sbjct: 27  DDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDAS-DVFGYTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  ++   LL  GA   A +S G T   +AA
Sbjct: 86  LAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA 121

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Query: 7   GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           G  + +     + D V+ LL E+   V+  D  G TPL  AA  G+K++ +LLL  GAD 
Sbjct: 5   GKRLIEAAENGNKDRVKDLL-ENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADP 63
Query: 67  NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           N+ +   G + LH AA +G  +V   LLS GA   A +S G+T   +AA
Sbjct: 64  NA-KDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAA 111

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G+TPL  AA  G+ +I ++LL HGADV++    +G++ LH
Sbjct: 27  DDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAA-DVYGFTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA++G  ++   LL  GA   A +  G T   +AA
Sbjct: 86  LAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D+ G+TPL  AA +G+ +I ++LL HGADVN+ R   G + LH
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-RDIWGRTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            AA  G  ++   LL  GA   A +  G+TA
Sbjct: 86  LAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 56.2 bits (134), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G TPL  AA+ G+ +I ++LL +GADVN+  H  G + L 
Sbjct: 27  DDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA-GMTPLR 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AAL G  ++   LL  GA   A +  G T   +AA
Sbjct: 86  LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA 121

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  DE G+TPL  AA  G+ +I ++LL +GADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNA-EDNFGITPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            AA+ G  ++   LL  GA   A +  G+TA
Sbjct: 86  LAAIRGHLEIVEVLLKHGADVNAQDKFGKTA 116

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 54/96 (56%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G TPL  AA+ G+ +I ++LL +GADVN+ +   G + LH
Sbjct: 27  DDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA-KDSLGVTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  ++   LL  GA   A++S G T   +AA
Sbjct: 86  LAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D+ G TPL  AA +G+ +I ++LL  GADVN+ + + GY+ LH
Sbjct: 27  DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  ++   LL AGA   A +  G T   +AA
Sbjct: 86  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 58.9 bits (141), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D+ G+TPL  AA +G+ +I ++LL HGADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DSWGRTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            AA  G  ++   LL  GA   A +  G+TA
Sbjct: 86  LAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 33  VDLYDEHGMTPLQHAAYKGNK-QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCA 91
           VD+ D++GMTPL  AAY+ +     +LLL     VN G   H  +ALH+A L+G   V +
Sbjct: 135 VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 92  CLLSAGAKSYATNSVGRTASQMA 114
            LL AGA   A N  G +A  +A
Sbjct: 195 LLLEAGANVDAQNIKGESALDLA 217

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D+ G TPL  AA +G+ +I ++LL  GADVN+ + + GY+ LH
Sbjct: 15  DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLH 73
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  ++   LL AGA   A +  G T   +AA
Sbjct: 74  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.9 bits (141), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D+ G TPL  AA +G+ +I ++LL  GADVN+ + + GY+ LH
Sbjct: 15  DDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA-KDKDGYTPLH 73
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  ++   LL AGA   A +  G T   +AA
Sbjct: 74  LAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 109

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D+ G+TPL  AA +G+ +I ++LL HGADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS-DIWGRTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            AA  G  ++   LL  GA   A +  G+TA
Sbjct: 86  LAATVGHLEIVEVLLEYGADVNAQDKFGKTA 116

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G TPL  AAY G+ +I ++LL +GADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNA-YDTLGSTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  ++   LL  GA   A +  G T   +AA
Sbjct: 86  LAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA 121

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G+TPL  AA  G+ +I ++LL HGADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-IDIXGSTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV 117
            AAL G  ++   LL  GA   A ++ G T   +AA +
Sbjct: 86  LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/93 (38%), Positives = 50/93 (53%), Gaps = 1/93 (1%)
Query: 22  VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
           V  +L +H + VD     G TPL  A++ GN ++ + LL H ADVN+ + + GYS LH A
Sbjct: 293 VADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLGYSPLHQA 351
Query: 82  ALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           A  G  D+   LL  GA     +S G T   +A
Sbjct: 352 AQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIA 384

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/98 (36%), Positives = 54/98 (55%), Gaps = 1/98 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G+TPL  AA  G+ +I ++LL HGADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNA-IDIMGSTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV 117
            AAL G  ++   LL  GA   A ++ G T   +AA +
Sbjct: 86  LAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIM 123

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/77 (42%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 39  HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
           +G TPL  AA  G+ ++ +LLL+ GADVN+ + ++G + LH AA +G  +V   LL AGA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 99  KSYATNSVGRTASQMAA 115
              A +  GRT   +AA
Sbjct: 60  DVNAKDKNGRTPLHLAA 76

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  DE+G+TPL  A   G+ +I ++LL +GADVN+     G++ LH
Sbjct: 27  DDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIGFTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            AA  G  ++   LL  GA   A +  G+TA
Sbjct: 86  LAAFIGHLEIAEVLLKHGADVNAQDKFGKTA 116

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/96 (37%), Positives = 51/96 (53%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G TPL  AAY G+ +I ++LL +GADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD-DSLGVTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  +V   LL  GA   A +  G T   +AA
Sbjct: 86  LAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 56.2 bits (134), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 1/97 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +    + YD +G TPL  AA  G+ +I ++LL +GADVN+    +G + LH
Sbjct: 15  DDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNA-VDTNGTTPLH 73
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            AA  G  ++   LL  GA   A ++ G T   +AA+
Sbjct: 74  LAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAY 110

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 52/96 (54%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G TPL  AA  G+ +I ++LL +GADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT-GITPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA +G  ++   LL  GA   A ++ G T   +AA
Sbjct: 86  LAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D  G TPL  AA   + +I ++LL HGADVN+  ++ G + LH
Sbjct: 27  DDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDND-GSTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            AAL G  ++   LL  GA   A +  G+TA
Sbjct: 86  LAALFGHLEIVEVLLKHGADVNAQDKFGKTA 116

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 1/96 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D +G TPL  AA  G+ +I ++LL +GADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFS-GSTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            AA  G  ++   LL  GA   A +++G T   +AA
Sbjct: 86  LAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA 121

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 22  VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
           + +LL +H   V   D+ G+ PL +A   G+ ++ +LLL HGA VN+      ++ LH A
Sbjct: 73  IVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFTPLHEA 131
Query: 82  ALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           A   + +VC+ LLS GA     N  G++A  MA
Sbjct: 132 ASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMA 164

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L+ +   V+  D  G TPL  AA  G+ +I ++LL +GADVN+  +  G + LH
Sbjct: 27  DDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNT-GRTPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            AA +   ++   LL  GA   A +  G+TA
Sbjct: 86  LAAWADHLEIVEVLLKHGADVNAQDKFGKTA 116

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 17  NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS 76
           N +  V+ LL +H   V   D+ G+ PL +A   G+ ++ +LL+ HGA VN       ++
Sbjct: 57  NRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFT 114
Query: 77  ALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
            LH AA  GK ++C  LL  GA     N  G T
Sbjct: 115 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 147

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/91 (34%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Query: 20  DNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           D+  ++L  +   V+  D+ G+TPL  AA   + +I ++LL +GADVN+     G + LH
Sbjct: 27  DDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNA-IDAIGETPLH 85
Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
             A+ G  ++   LL  GA   A +  G+TA
Sbjct: 86  LVAMYGHLEIVEVLLKHGADVNAQDKFGKTA 116

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 17  NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS 76
           N +  V+ LL +H   V   D+ G+ PL +A   G+ ++ +LL+ HGA VN       ++
Sbjct: 55  NRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFT 112
Query: 77  ALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
            LH AA  GK ++C  LL  GA     N  G T
Sbjct: 113 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 145

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 48/93 (51%), Gaps = 2/93 (2%)
Query: 17  NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS 76
           N +  V+ LL +H   V   D+ G+ PL +A   G+ ++ +LL+ HGA VN       ++
Sbjct: 53  NRVSVVEYLL-QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVA-DLWKFT 110
Query: 77  ALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
            LH AA  GK ++C  LL  GA     N  G T
Sbjct: 111 PLHEAAAKGKYEICKLLLQHGADPTKKNRDGNT 143

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           K DI +V+ LL ++    ++ D  G TPL  A   G+ ++ +LLL H A VN+  +++  
Sbjct: 20  KGDIPSVEYLL-QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQND- 77
Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVG 107
           S LH AA +G  D+   LLS GA   A N  G
Sbjct: 78  SPLHDAAKNGHVDIVKLLLSYGASRNAVNIFG 109

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 22  VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
           V ++L     R+++ +    TPL  AA  G++ I Q LL + AD+N+  +EHG   LH+A
Sbjct: 54  VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYA 112
Query: 82  ALSGKDDVCACLLSAGAKSYATNSVG 107
              G+D V   L++ GA     N  G
Sbjct: 113 CFWGQDQVAEDLVANGALVSICNKYG 138

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 22  VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
           V ++L     R+++ +    TPL  AA  G++ I Q LL + AD+N+  +EHG   LH+A
Sbjct: 49  VVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYA 107
Query: 82  ALSGKDDVCACLLSAGAKSYATNSVG 107
              G+D V   L++ GA     N  G
Sbjct: 108 CFWGQDQVAEDLVANGALVSICNKYG 133

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Query: 22  VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
           VQ LLS  ++ V+  D+ G TP+  A    +  + +LLL  G+D+N   +E     LH+A
Sbjct: 93  VQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENI-CLHWA 151
Query: 82  ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           A SG  D+   LL+A    +A N  G +   +AA
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAA 185

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
           G TPL +AA  G+ +  + LL  GADVN+ R + G + LH AA +G  ++   LL+ GA 
Sbjct: 9   GNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 100 SYATNSVGRTASQMA 114
             A +  G T   +A
Sbjct: 68  VNARSKDGNTPEHLA 82

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
           D+   T L  A   G+ +I + LL  G  VN  + + G+S LH AA +G+D++   LL  
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 97  GAKSYATNSVGRTASQMAA 115
           GA+  A N  G T    AA
Sbjct: 96  GAQVNAVNQNGCTPLHYAA 114

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
           D+   T L  A   G+ +I + LL  G  VN  + + G+S LH AA +G+D++   LL  
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 97  GAKSYATNSVGRTASQMAA 115
           GA+  A N  G T    AA
Sbjct: 97  GAQVNAVNQNGCTPLHYAA 115

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 50/101 (49%), Gaps = 2/101 (1%)
Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
           +  N +   +KLLS+    V+  D  G TPL  +   G  ++   LL+HGA+VN  R+  
Sbjct: 76  VKNNRLGIAEKLLSKGS-NVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLE 133
Query: 74  GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           G + L  A+  G+ ++   LL  GA   A +  G TA   A
Sbjct: 134 GETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASA 174

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 44  LQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
           L  AA  G     ++L+ +GADVN+ + + GY+ LH AA  G  ++   LL AGA   A 
Sbjct: 6   LLEAARAGQDDEVRILMANGADVNA-KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 104 NSVGRTA 110
           +  G+TA
Sbjct: 65  DKFGKTA 71

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S  D + V +LL E    ++  +  G+T L  A    N  + + L+++GA++N   +E G
Sbjct: 49  SSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNE-G 106
Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT 109
           +  LH AA  G  D+   L+S GA   A NS G T
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDT 141

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
           D+   T L  A   G+ +I + LL  G  VN  + + G+S LH AA +G+D++   LL  
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 97  GAKSYATNSVGRTASQMAA 115
           GA   A N  G T    AA
Sbjct: 96  GAHVNAVNQNGCTPLHYAA 114

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 2/99 (2%)
Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           K D   + +LL +    VD  DE+G T L   A  G+ +  +LL + GAD++      G 
Sbjct: 54  KADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 111
Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           +ALH AA   + +V   L+  GA     +  G TA ++A
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELA 150

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/172 (25%), Positives = 73/172 (42%), Gaps = 33/172 (19%)
Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           K D   + +LL +    VD  DE+G T L   A  G+ +  +LL + GAD++      G 
Sbjct: 55  KADEQALSQLLEDRD--VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGL 112
Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYI 135
           +ALH AA   + +V   L+  GA     +  G TA ++A  +                  
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI------------------ 154
Query: 136 VPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVV 187
               L+TTPK +P+       F  ++ +  V   +N+L   +     V ++V
Sbjct: 155 ----LKTTPKGNPM------QFGRRIGLEKV---INVLEGQVFEYAEVDEIV 193

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHG-MTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
           +   D+D VQ+LL E    V+  +E G  TPL +A     + I +LLL HGAD    R +
Sbjct: 33  VQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKK 90
Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           +G +    AA++G   +    LS GA     +  G TA   AA
Sbjct: 91  NGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 133

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/82 (37%), Positives = 44/82 (53%), Gaps = 2/82 (2%)
Query: 24  KLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
           +LL E    +D  D + G +PL HA    +  + QLLL HGA+VN+  +  G SALH A+
Sbjct: 133 QLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYS-GSSALHSAS 191
Query: 83  LSGKDDVCACLLSAGAKSYATN 104
             G   +   L+ +GA S   N
Sbjct: 192 GRGLLPLVRTLVRSGADSSLKN 213

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 51/103 (49%), Gaps = 3/103 (2%)
Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHG-MTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
           +   D+D VQ+LL E    V+  +E G  TPL +A     + I +LLL HGAD    R +
Sbjct: 13  VQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD-PVLRKK 70
Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           +G +    AA++G   +    LS GA     +  G TA   AA
Sbjct: 71  NGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAA 113

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 10  IFDFISKNDIDNVQKLLSEHKLRVD---LYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           + D   + + D VQ+++ E    VD   L ++ G+T L +A   G+ +I + L+  G +V
Sbjct: 41  LLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 67  NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYA-TNSVGRTAS 111
           N+   + G++ LH AA      VC  L+ +GA  +A T S  +TA+
Sbjct: 97  NAADSD-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
           +E G+T L +A    N  I   L+  GA+VNS    HG++ LH AA      +C  L+  
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAGANVNS-PDSHGWTPLHCAASCNDTVICMALVQH 109
Query: 97  GAKSYATN-SVGRTA 110
           GA  +AT  S G TA
Sbjct: 110 GAAIFATTLSDGATA 124

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
           D+   T L  A   G+ +I + LL  G  VN  + + G+S LH AA +G D++   LL  
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 97  GAKSYATNSVGRTASQMAA 115
           GA   A N  G T    AA
Sbjct: 96  GAHVNAVNQNGCTPLHYAA 114

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 9/106 (8%)
Query: 10  IFDFISKNDIDNVQKLLSEHKLRVD---LYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           + D   + + D VQ+++ E    VD   L ++ G+T L +A   G+ +I + L+  G +V
Sbjct: 41  LLDSSLEGEFDLVQRIIYE----VDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV 96
Query: 67  NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYA-TNSVGRTAS 111
           N+   + G++ LH AA      VC  L+ +GA  +A T S  +TA+
Sbjct: 97  NAADSD-GWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAA 141

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 42  TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSY 101
           TPL  AA +G+  I ++LL HGADVN+ +     +ALH+A      +V   L+  GA  +
Sbjct: 69  TPLHMAASEGHANIVEVLLKHGADVNA-KDMLKMTALHWATEHNHQEVVELLIKYGADVH 127
Query: 102 ATNSVGRTA 110
             +   +TA
Sbjct: 128 TQSKFCKTA 136

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
Query: 19  IDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSAL 78
           +D +Q LL E +  V++ D  G  PL  AA +G+ ++ + L+ H A     R+  G +A 
Sbjct: 83  LDTLQTLL-EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC 141
Query: 79  HFAALSGKDDVCACLLSAGAKSYATN 104
             A L G+++V + + + GA   ATN
Sbjct: 142 DLARLYGRNEVVSLMQANGAGG-ATN 166

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 44/89 (49%), Gaps = 1/89 (1%)
Query: 22  VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA 81
           V K L +   + +  D  G TPL +A   G+ ++  LLL HGA +N+  ++ G +ALH A
Sbjct: 134 VVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK-GNTALHEA 192
Query: 82  ALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            +     V   LL  GA     N   RTA
Sbjct: 193 VIEKHVFVVELLLLHGASVQVLNKRQRTA 221

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	534
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-23
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-20
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-18
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-17
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-23
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-20
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-22
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-17
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-22
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-21
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-19
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-18
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-22
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-21
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-20
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-18
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-17
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-16
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-21
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-19
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-22
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-20
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-17
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-22
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-21
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-16
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-22
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-19
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-06
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-18
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-11
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-21
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-16
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-21
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-20
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-19
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-21
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-19
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-18
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-14
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-21
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-20
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-19
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-21
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-20
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-16
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-21
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-20
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-19
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-21
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-18
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-17
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	6e-16
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	8e-21
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-20
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-17
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-06
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-20
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-12
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-20
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-18
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-12
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-20
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-17
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-20
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-16
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-20
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	9e-18
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-16
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-20
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-19
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-16
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-20
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-17
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	1e-16
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-20
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-20
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-17
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-20
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	5e-18
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-20
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	8e-20
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-19
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	6e-18
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	9e-20
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-17
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-19
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-16
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-19
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-18
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	6e-07
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-19
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-18
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-16
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	8e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	2e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-19
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-19
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-18
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-19
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-18
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-17
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-18
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-17
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-18
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-18
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	7e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-18
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-17
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	7e-04
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	1e-17
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	4e-17
2rfa_A	232	Transient receptor potential cation channel subfa	1e-17
2rfa_A	232	Transient receptor potential cation channel subfa	3e-15
2rfa_A	232	Transient receptor potential cation channel subfa	3e-13
2rfa_A	232	Transient receptor potential cation channel subfa	5e-13
2rfa_A	232	Transient receptor potential cation channel subfa	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-16
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-12
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-10
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	7e-16
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	7e-16
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	1e-15
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	1e-15
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	2e-15
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	2e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-15
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-08
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	5e-15
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	5e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-15
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-08
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2etb_A	256	Transient receptor potential cation channel subfam	5e-14
2etb_A	256	Transient receptor potential cation channel subfam	6e-13
2etb_A	256	Transient receptor potential cation channel subfam	7e-13
2etb_A	256	Transient receptor potential cation channel subfam	4e-10
2etb_A	256	Transient receptor potential cation channel subfam	5e-09
2pnn_A	273	Transient receptor potential cation channel subfa	1e-13
2pnn_A	273	Transient receptor potential cation channel subfa	5e-12
2pnn_A	273	Transient receptor potential cation channel subfa	2e-09
2pnn_A	273	Transient receptor potential cation channel subfa	3e-09
2pnn_A	273	Transient receptor potential cation channel subfa	5e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-13
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-11
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	9e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	5e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-11
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-09
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	9e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	9e-11
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	5e-07
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	5e-05
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	4e-04
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	4e-04

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 98.4 bits (246), Expect = 4e-23
 Identities = 29/102 (28%), Positives = 44/102 (43%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             N  +  +    + +L+++  +  G TPL  A    + ++ +LL D GAD+N      G
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + LH A  +    V   LL AGA   A    GRT    A  
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 88.8 bits (221), Expect = 7e-20
 Identities = 22/101 (21%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             D + V+ L       ++  +   G TPL  A       + +LLL  GAD  + R   G
Sbjct: 168 HKDAEMVRLLRD-AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA-RMYGG 225

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            + L  A L     +   L + GA          +    + 
Sbjct: 226 RTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSG 266

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 84.9 bits (211), Expect = 1e-18
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 3/85 (3%)

Query: 16  KNDIDNVQKLLSE--HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
                 +  LL        +DL ++ G T L  AA  G     + L   GA V       
Sbjct: 19  HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERG 77

Query: 74  GYSALHFAALSGKDDVCACLLSAGA 98
           G++ALH A           LL    
Sbjct: 78  GHTALHLACRVRAHTCACVLLQPRP 102

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 80.3 bits (199), Expect = 5e-17
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNS--GRHEHGYSALHFAALSGKDDVCACLL 94
            E G T L  A    ++     LL   A       +++ G +ALH AA+ G+      L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 95  SAGAKSYATNSVGRTASQMAAF 116
           +AGA        G TA  +A  
Sbjct: 66  AAGAGVLVAERGGHTALHLACR 87

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 75.7 bits (187), Expect = 2e-15
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            +    +V +LL +           G TPL  A  + N  + +LL  HGA          
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE-DGGDK 258

Query: 75  YSALHFAALSGKDDV 89
            S    +      D 
Sbjct: 259 LSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 73.7 bits (182), Expect = 8e-15
 Identities = 16/115 (13%), Positives = 31/115 (26%), Gaps = 14/115 (12%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
              +   V+KL +     V + +  G T L  A          +LL           +  
Sbjct: 54  ILGEASTVEKLYA-AGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY 112

Query: 75  YS-------------ALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            +             A   +  + +++          +  A N  G T   +A  
Sbjct: 113 LTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVI 167

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.4 bits (163), Expect = 2e-12
 Identities = 17/101 (16%), Positives = 35/101 (34%), Gaps = 6/101 (5%)

Query: 17  NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGY 75
           +  D     L++ +   D   +    P    +      +      D    + +  +  G+
Sbjct: 104 HPRDASDTYLTQSQ---DCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGH 159

Query: 76  SALHFAALSGKDDVCACLLSAGA-KSYATNSVGRTASQMAA 115
           + LH A +    ++   L  AGA  +    + GRT   +A 
Sbjct: 160 TPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAV 200

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 94.4 bits (236), Expect = 5e-23
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++ D+  V++LL    +  D  +  G T LQ   + G+  I   LL  GA  N  +   G
Sbjct: 11  ARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNV-QDTSG 68

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            S +H AA +G  D    L+  GA     +  G     +A  
Sbjct: 69  TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQ 110

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 85.2 bits (212), Expect = 8e-20
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 3/102 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
                    +LL       ++ D  G +P+  AA  G     ++L++HGADVN      G
Sbjct: 44  MFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTG 101

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
              +H A   G   V + L +  +  +  ++ G T  ++A  
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQ 142

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.8 bits (167), Expect = 9e-14
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 3/81 (3%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               +D ++ L+  H   V++ D  G  P+  A  +G+  +   L    +D++  R   G
Sbjct: 77  RTGFLDTLKVLVE-HGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHR-RDARG 133

Query: 75  YSALHFAALSGKDDVCACLLS 95
            + L  A   G  D+   L  
Sbjct: 134 LTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 40  GMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
               L  AA +G+ +++ +LL       ++  +  G +AL      G   +   LL  GA
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQVMM-FGSTAIALELLKQGA 59

Query: 99  KSYATNSVGRTASQMAAF 116
                ++ G +    AA 
Sbjct: 60  SPNVQDTSGTSPVHDAAR 77

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
             L+     +   D  G+TPL+ A  +G + +  +L  H
Sbjct: 118 SFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 94.5 bits (236), Expect = 1e-22
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            K D   + +LL      VD  DE+G T L   A  G+ +  +LL + GAD++      G
Sbjct: 53  RKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 110

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            +ALH AA   + +V   L+  GA     +  G TA ++A 
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 151

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 79.8 bits (198), Expect = 1e-17
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 24  KLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
           +LL+E    +D  D   G+T L  AA     ++ + L++ GAD+     E G +AL  A 
Sbjct: 93  RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAR 151

Query: 83  LSGKDDVCACLLSAGAK 99
              K       +  G +
Sbjct: 152 EILKTTPKGNPMQFGRR 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 65.2 bits (160), Expect = 2e-12
 Identities = 15/80 (18%), Positives = 20/80 (25%), Gaps = 5/80 (6%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
              G          G+           ADV         +    AA    +   + LL  
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLE- 65

Query: 97  GAKSYATNSVGRTASQMAAF 116
                A +  GRTA    A 
Sbjct: 66  DRDVDAVDENGRTALLFVAG 85

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 52.5 bits (127), Expect = 4e-08
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
           + L E    +++ DE G+T L+ A            +  G  + 
Sbjct: 127 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 93.3 bits (233), Expect = 3e-22
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 1/101 (0%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           + +   V+  L   +  ++  D+HG +PL  A  +G   + ++L+  GA +N   +    
Sbjct: 15  EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDD 73

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           + LH AA  G  D+   LL   A   A N  G      A F
Sbjct: 74  TPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACF 114

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 91.0 bits (227), Expect = 2e-21
 Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 1/92 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           ++L     R+++ +    TPL  AA  G++ I Q LL + AD+N+  +EHG   LH+A  
Sbjct: 56  EMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA-VNEHGNVPLHYACF 114

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            G+D V   L++ GA     N  G      A 
Sbjct: 115 WGQDQVAEDLVANGALVSICNKYGEMPVDKAK 146

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 84.8 bits (211), Expect = 2e-19
 Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S    D VQKLL  +K  ++  +EHG  PL +A + G  Q+ + L+ +GA V+   +++G
Sbjct: 81  SHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI-CNKYG 138

Query: 75  YSALHFAALSGKDDVCACLLSAGA 98
              +  A    ++ +       G 
Sbjct: 139 EMPVDKAKAPLRELLRERAEKMGQ 162

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 81.7 bits (203), Expect = 3e-18
 Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
               M  +     +GN    +L LD+   D+N    +HG+S LH+A   G+  V   L+ 
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHWACREGRSAVVEMLIM 60

Query: 96  AGAKSYATNSVGRTASQMAAF 116
            GA+    N    T   +AA 
Sbjct: 61  RGARINVMNRGDDTPLHLAAS 81

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 7/52 (13%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
                  + L++ +   V + +++G  P+  A     + + +     G ++N
Sbjct: 115 WGQDQVAEDLVA-NGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 96.8 bits (242), Expect = 4e-22
 Identities = 34/109 (31%), Positives = 53/109 (48%), Gaps = 1/109 (0%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           +LL      V+  ++  MTPL  AA + +  + ++L  HGA +N+     G +ALH AAL
Sbjct: 231 ELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA-LDSLGQTALHRAAL 289

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVD 132
           +G    C  LLS G+     +  G TA+QM    V  +++        D
Sbjct: 290 AGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEAVQQILSESTPMRTSD 338

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 95.6 bits (239), Expect = 1e-21
 Identities = 32/102 (31%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
              + + +  LL+   +     D    TPL  AA     +I QLLL HGADV++ + + G
Sbjct: 33  RSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA-KDKGG 91

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
              LH A   G  +V   LL  GA   A +    T    AA 
Sbjct: 92  LVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAAS 133

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 91.0 bits (227), Expect = 3e-20
 Identities = 37/101 (36%), Positives = 53/101 (52%), Gaps = 2/101 (1%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
            N +  VQ LL  H   V   D+ G+ PL +A   G+ ++ +LLL HGA VN+      +
Sbjct: 68  YNRVRIVQLLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQF 125

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           + LH AA   + +VC+ LLS GA     N  G++A  MA  
Sbjct: 126 TPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPT 166

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 86.4 bits (215), Expect = 1e-18
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 5/105 (4%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG---NKQICQLLLDHGADVNSGRH 71
            + D+  V+K L+   +      +   T L  A        KQ+ +LLL  GA+VN  ++
Sbjct: 187 READLAKVKKTLALEII-NFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNE-KN 244

Query: 72  EHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           +   + LH AA    +DV   L   GAK  A +S+G+TA   AA 
Sbjct: 245 KDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAAL 289

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 84.1 bits (209), Expect = 6e-18
 Identities = 21/93 (22%), Positives = 36/93 (38%), Gaps = 2/93 (2%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGYSALHFAA 82
             L++   +  L  E+    L  AA  GN +++  LL     + ++       + LH AA
Sbjct: 8   LDLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA-SDGRKSTPLHLAA 66

Query: 83  LSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
              +  +   LL  GA  +A +  G      A 
Sbjct: 67  GYNRVRIVQLLLQHGADVHAKDKGGLVPLHNAC 99

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 82.2 bits (204), Expect = 3e-17
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 2/84 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S    +  + LL  H   V+  D    TPL  AA K   ++C LLL HGAD     + HG
Sbjct: 100 SYGHYEVTELLLK-HGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL-VNCHG 157

Query: 75  YSALHFAALSGKDDVCACLLSAGA 98
            SA+  A      +         +
Sbjct: 158 KSAVDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 77.9 bits (193), Expect = 7e-16
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            +   D ++ L   H  +++  D  G T L  AA  G+ Q C+LLL +G+D +      G
Sbjct: 256 ERAHNDVMEVLHK-HGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI-ISLQG 313

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT--ASQ 112
           ++A          +    +LS       ++   R   AS+
Sbjct: 314 FTAAQMGN-----EAVQQILSESTPMRTSDVDYRLLEASK 348

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 67.5 bits (166), Expect = 2e-12
 Identities = 26/125 (20%), Positives = 38/125 (30%), Gaps = 24/125 (19%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH- 73
           SKN ++    LLS H     L + HG + +  A     ++         + + + R    
Sbjct: 133 SKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADL 191

Query: 74  -------------------GYSALHFAALSGKD---DVCACLLSAGAKSYATNSVGRTAS 111
                                +ALH A  S       V   LL  GA     N    T  
Sbjct: 192 AKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPL 251

Query: 112 QMAAF 116
            +AA 
Sbjct: 252 HVAAE 256

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 15/80 (18%)

Query: 38  EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG-KDDVCACLLSA 96
           E G + L              L D  A       E+    L  AA SG ++ + A L   
Sbjct: 2   EFGKSAL-------------DLADPSAKAVL-TGEYKKDELLEAARSGNEEKLMALLTPL 47

Query: 97  GAKSYATNSVGRTASQMAAF 116
               +A++    T   +AA 
Sbjct: 48  NVNCHASDGRKSTPLHLAAG 67

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 92.1 bits (230), Expect = 5e-22
 Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 1/101 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++ ++D +++ L +    V+  DE G TPL  A+  G  +  + LL+ GAD +    +  
Sbjct: 11  AQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILA-KER 69

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            SAL  A+  G  D+   LL         +  G T    A 
Sbjct: 70  ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAV 110

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 89.8 bits (224), Expect = 3e-21
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 1/86 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
            LL E  + +++YD +G TPL +A    + +  + LL  GAD+ +   + GY+ +  A  
Sbjct: 86  GLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT-EADSGYTPMDLAVA 144

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRT 109
            G   V   + +   K + +N V   
Sbjct: 145 LGYRKVQQVIENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 84.8 bits (211), Expect = 2e-19
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 1/93 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           + L E      +  +   + L  A+  G   I  LLL+   D+N     +G + L +A  
Sbjct: 53  RFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVR 111

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
                    LL+ GA        G T   +A  
Sbjct: 112 GNHVKCVEALLARGADLTTEADSGYTPMDLAVA 144

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 77.1 bits (191), Expect = 9e-17
 Identities = 15/77 (19%), Positives = 31/77 (40%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
               +   A +G     +  L  G ++ +   E G++ L +A+  G+ +    LL  GA 
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

Query: 100 SYATNSVGRTASQMAAF 116
            +       +A  +A+ 
Sbjct: 62  PHILAKERESALSLAST 78

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 95.3 bits (238), Expect = 5e-22
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 1/101 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            +  + + ++ L+   +    + + G T L  AA KG  ++ +LL+    DVN  +   G
Sbjct: 174 ERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDG 232

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           ++ LH AA  GK++ C  L+       A N VG+TA  +A 
Sbjct: 233 WTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD 273

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 94.1 bits (235), Expect = 2e-21
 Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S  D + V +LL      ++  +  G+T L  A    N  + + L+++GA++N      G
Sbjct: 49  SSGDTEEVLRLLE-RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEG 106

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           +  LH AA  G  D+   L+S GA   A NS G T   +A  
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEE 148

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 79.5 bits (197), Expect = 2e-16
 Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 3/101 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
                +++  +   + +  +  + G      A   G+ +    LL+ GAD+N   +  G 
Sbjct: 18  IGSETDLEPPVV-KRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINY-ANVDGL 74

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           +ALH A +    D+   L+  GA     ++ G      AA 
Sbjct: 75  TALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS 115

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 74.1 bits (183), Expect = 1e-14
 Identities = 17/85 (20%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           +K   + ++ L+   +  V++ D  G TPL  AA+ G ++ C++L+++  D+ +  ++ G
Sbjct: 208 AKGYTEVLKLLIQ-ARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA-VNKVG 265

Query: 75  YSALHFAALSGKDDVCACLLSAGAK 99
            +A   A       +          
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLL 290

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 2/85 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             +++D V+ L+  +   ++  D  G  PL  AA  G   I + L+  GA V +  +  G
Sbjct: 82  IDDNVDMVKFLVE-NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEG 139

Query: 75  YSALHFAALSGKDDVCACLLSAGAK 99
            + L  A     +++    ++    
Sbjct: 140 DTPLDIAEEEAMEELLQNEVNRQGV 164

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.1 bits (178), Expect = 4e-14
 Identities = 17/101 (16%), Positives = 30/101 (29%), Gaps = 8/101 (7%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           +   + +Q  ++                 +       +   Q L     +      + G 
Sbjct: 149 EAMEELLQNEVNRQ-------GVDIEAARKEEERIMLRDARQWLNSGHINDVR-HAKSGG 200

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           +ALH AA  G  +V   L+ A       +  G T    AA 
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAH 241

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.4 bits (163), Expect = 3e-12
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 33  VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
           + + D       Q   + G++   +  +               +    A  SG  +    
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKV--KFDDGAVFLAACSSGDTEEVLR 58

Query: 93  LLSAGAKSYATNSVGRTASQMAAF 116
           LL  GA     N  G TA   A  
Sbjct: 59  LLERGADINYANVDGLTALHQACI 82

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 7/49 (14%), Positives = 18/49 (36%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
           ++L E+   ++  ++ G T    A       + +L        +  R +
Sbjct: 249 RILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKREK 297

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 90.6 bits (226), Expect = 7e-22
 Identities = 35/101 (34%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            K DI +V+ LL  +    ++ D  G TPL  A   G+ ++ +LLL H A VN+      
Sbjct: 19  IKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQN 76

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            S LH AA +G  D+   LLS GA   A N  G        
Sbjct: 77  DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTD 117

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 83.6 bits (208), Expect = 2e-19
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
           +  G T L  A+ KG+    + LL +G+D N  +   G++ LH A   G   V   LL  
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQH 65

Query: 97  GAKSYATNSVGRTASQMAA 115
            A    T     +    AA
Sbjct: 66  KALVNTTGYQNDSPLHDAA 84

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           +LL +HK  V+       +PL  AA  G+  I +LLL +GA  N+  +  G   + +   
Sbjct: 60  ELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA-VNIFGLRPVDYTDD 118

Query: 84  SGKDDVCACLLSAGA 98
                +        +
Sbjct: 119 ESMKSLLLLPEKNES 133

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 44.7 bits (107), Expect = 7e-06
 Identities = 8/45 (17%), Positives = 18/45 (40%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           KLL  +    +  +  G+ P+ +   +  K +  L   + +   S
Sbjct: 93  KLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 93.4 bits (233), Expect = 8e-22
 Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            K D   + +LL      VD  DE+G T L   A  G+ +  +LL + GAD++      G
Sbjct: 54  RKADEQALSQLL--EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGG 111

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            +ALH AA   + +V   L+  GA     +  G TA ++A 
Sbjct: 112 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAR 152

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 82.7 bits (205), Expect = 5e-18
 Identities = 24/101 (23%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 24  KLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
           +LL+E    +D  D   G+T L  AA     ++ + L++ GAD+     E G +AL  A 
Sbjct: 94  RLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEV-EDERGLTALELAR 152

Query: 83  LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVIN 123
              K       +  G +      +     Q+  +  V  I 
Sbjct: 153 EILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIV 193

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 64.2 bits (157), Expect = 1e-11
 Identities = 15/80 (18%), Positives = 20/80 (25%), Gaps = 5/80 (6%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
              G          G+           ADV         +    AA    +   + LL  
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYIAADVV----SEYETPWWTAARKADEQALSQLLE- 66

Query: 97  GAKSYATNSVGRTASQMAAF 116
                A +  GRTA    A 
Sbjct: 67  DRDVDAVDENGRTALLFVAG 86

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 12/97 (12%), Positives = 23/97 (23%), Gaps = 21/97 (21%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG-------------- 69
           + L E    +++ DE G+T L+ A            +  G  +                 
Sbjct: 128 EALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYA 187

Query: 70  -------RHEHGYSALHFAALSGKDDVCACLLSAGAK 99
                  +   G    +        D         A+
Sbjct: 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 6/57 (10%), Positives = 12/57 (21%), Gaps = 3/57 (5%)

Query: 29  HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG 85
               +      G        +K       +   H A+      +     L +A    
Sbjct: 188 EVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDV---AKDYEDGLEYAVAES 241

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 89.0 bits (222), Expect = 2e-21
 Identities = 30/100 (30%), Positives = 43/100 (43%), Gaps = 2/100 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
             D+D V+  ++     V+   E G  PL +AA  G  +I + LL  GAD+N+   +H  
Sbjct: 17  NGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHI 74

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           + L  A   G       LLS GA        G TA +   
Sbjct: 75  TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATD 114

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 39  HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
                   A   G+    +  +  G DVN    E G   LH+AA  G+ ++   LL  GA
Sbjct: 6   MCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKGA 64

Query: 99  KSYATNSVGRTASQMAAF 116
              A +    T    A +
Sbjct: 65  DINAPDKHHITPLLSAVY 82

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 67.8 bits (167), Expect = 4e-14
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           + L      ++  D+H +TPL  A Y+G+    +LLL  GAD    +   G +A      
Sbjct: 57  EFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKT-VKGPDGLTAFEATDN 115

Query: 84  SGKDDV 89
                +
Sbjct: 116 QAIKAL 121

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 96.0 bits (240), Expect = 2e-21
 Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++     V  +L +H + VD     G TPL  A++ GN ++ + LL H ADVN+ + + G
Sbjct: 286 AQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA-KTKLG 344

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           YS LH AA  G  D+   LL  GA     +S G T   +A  
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKR 386

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 95.6 bits (239), Expect = 2e-21
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           +LL E     +   ++G+TPL  A +  N  I +LLL  G   +S    +GY+ LH AA 
Sbjct: 163 ELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAK 221

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
             + +V   LL  G  + A +  G T   +AA 
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTPLHLAAQ 254

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 5e-21
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               +  V+ LL       ++ +    TPL  AA  G+ ++ + LL + A VN+ + +  
Sbjct: 23  FMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDD 80

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + LH AA  G  ++   LL   A      + G T   +AA 
Sbjct: 81  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAR 122

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.5 bits (236), Expect = 6e-21
 Identities = 28/102 (27%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
                +  + LL  +K +V+   +   TPL  AA  G+  + +LLL++ A+ N      G
Sbjct: 56  RAGHTEVAKYLLQ-NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL-ATTAG 113

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           ++ LH AA  G  +    LL   A        G T   +AA 
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAK 155

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 94.1 bits (235), Expect = 7e-21
 Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             N++D V+ LL            +G TPL  AA +   ++ + LL +G   N+     G
Sbjct: 188 HHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-ESVQG 245

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + LH AA  G  ++ A LLS  A     N  G T   + A 
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQ 287

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.8 bits (229), Expect = 5e-20
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           +  ++ V  LL   +       + G TPL  AA  G  ++ +LLL+  A  N+   ++G 
Sbjct: 123 EGHVETVLALLE-KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGL 180

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           + LH A      D+   LL  G   ++    G T   +AA 
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAK 221

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.0 bits (227), Expect = 8e-20
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 1/83 (1%)

Query: 33  VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
                E G+TPL  A++ G+  I + LL  GA  N   +    + LH AA +G  +V   
Sbjct: 7   GGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKY 65

Query: 93  LLSAGAKSYATNSVGRTASQMAA 115
           LL   AK  A     +T    AA
Sbjct: 66  LLQNKAKVNAKAKDDQTPLHCAA 88

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 91.0 bits (227), Expect = 8e-20
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           +   + V  LLS  +   +L ++ G+TPL   A +G+  +  +L+ HG  V++     GY
Sbjct: 255 EGHAEMVALLLS-KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGY 312

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           + LH A+  G   +   LL   A   A   +G +    AA 
Sbjct: 313 TPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ 353

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 90.2 bits (225), Expect = 1e-19
 Identities = 28/100 (28%), Positives = 47/100 (47%), Gaps = 2/100 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           +N ++  + LL  +    +     G+TPL  AA +G+ ++  LLL   A+ N   ++ G 
Sbjct: 222 QNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGL 279

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           + LH  A  G   V   L+  G    AT  +G T   +A+
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVAS 319

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 80.6 bits (200), Expect = 2e-16
 Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
              +I  V+ LL  H+  V+   + G +PL  AA +G+  I  LLL +GA  N      G
Sbjct: 320 HYGNIKLVKFLLQ-HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE-VSSDG 377

Query: 75  YSALHFAALSGKDDVCACL---LSAGAKSYATNSVGRTASQMA 114
            + L  A   G   V   L       +    ++    +  +  
Sbjct: 378 TTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 52.5 bits (127), Expect = 2e-07
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 62  HGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            G        E G + LH A+  G   +   LL  GA    +N    T   MAA
Sbjct: 3   PGISGGG-GGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAA 55

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.7 bits (99), Expect = 5e-04
 Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 28/80 (35%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLL--------------- 59
            +   D V  LL  +    +     G TPL  A   G   +  +L               
Sbjct: 353 QQGHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411

Query: 60  ------------LDHGADVN 67
                       LD   D  
Sbjct: 412 HRMSFPETVDEILDVSEDEG 431

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 93.3 bits (233), Expect = 2e-21
 Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            +  ++ V  L++ +   +D    H  TPL  A     +   + LL+ GADVN G+    
Sbjct: 166 RRGHVECVNSLIA-YGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK--GQ 222

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            S LH    +  +++   L+  GA + A N+ G+   ++   
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPP 264

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 91.8 bits (229), Expect = 8e-21
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 3/102 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
                 +++ L+S     V++     ++PL  A   G+    ++LL HGA VN       
Sbjct: 68  IHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADW 125

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           ++ L  A +SG  D    LL  GA     +    +    AA 
Sbjct: 126 HTPLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAAR 166

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 86.0 bits (214), Expect = 6e-19
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 2/92 (2%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           K+L +H  +V+       TPL +A   G+     LLL HGA V         S +H AA 
Sbjct: 109 KILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAAR 166

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            G  +    L++ G       S   T   +A 
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTPLYLAC 198

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 84.1 bits (209), Expect = 3e-18
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 25  LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
            L  + L  D       +P+  AA  G++   + L+  G  VN        S LH A L 
Sbjct: 46  RLLSNPLMGD--AVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLG 102

Query: 85  GKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           G       LL  GA+     +   T    A  
Sbjct: 103 GHLSCVKILLKHGAQVNGVTADWHTPLFNACV 134

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 73.7 bits (182), Expect = 1e-14
 Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
            +   +PL       ++++  LL+D GAD  + ++  G   +              L   
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLMDFGADTQA-KNAEGKRPVELVPPESPLAQL-FLERE 276

Query: 97  GA 98
           GA
Sbjct: 277 GA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 17/107 (15%), Positives = 31/107 (28%), Gaps = 14/107 (13%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYD-----EHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
           S +   +   L+      +   D       G  P     + G       LL +    ++ 
Sbjct: 4   SHHHHHHSSGLVP-RGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDA- 56

Query: 70  RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
                +S +H AA+ G       L+S G       +   +    A  
Sbjct: 57  --VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACL 101

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 11/74 (14%)

Query: 47  AAYKGNKQICQLLLDHGADVNS----GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYA 102
            +   +      L+  G+ + S         G          G       LLS      A
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIR-----LLSNPLMGDA 56

Query: 103 TNSVGRTASQMAAF 116
            +    +    AA 
Sbjct: 57  VS--DWSPMHEAAI 68

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 1/44 (2%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
            LL +        +  G  P++    +        L   GA + 
Sbjct: 239 CLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 91.7 bits (229), Expect = 3e-21
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 16  KNDIDNVQKLLS---EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
                 ++ LL       L ++  +  G+T L  A     ++  QLLL+ GAD+++   +
Sbjct: 89  HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIK 148

Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            G S L  A  +    +   LL  GA   A    G +A   A+ 
Sbjct: 149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASG 192

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 88.7 bits (221), Expect = 4e-20
 Identities = 26/108 (24%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 16  KNDIDNVQKLLS---EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
           + ++  V +L++   +    +D+Y+    TPL  A       + +LL+  GA   +    
Sbjct: 19  QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDR 77

Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSY----ATNSVGRTASQMAAF 116
           HG +A H A           LL + A       A N  G TA  +A  
Sbjct: 78  HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVN 125

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 84.8 bits (211), Expect = 7e-19
 Identities = 34/102 (33%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEH-GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               + VQ LL      +D  D   G +PL HA    +  + QLLL HGA+VN+ +   G
Sbjct: 126 TECQETVQLLLE-RGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA-QMYSG 183

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            SALH A+  G   +   L+ +GA S   N    T   +A  
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARS 225

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 79.8 bits (198), Expect = 4e-17
 Identities = 20/83 (24%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
            N +  VQ LL  H   V+     G + L  A+ +G   + + L+  GAD +  ++ H  
Sbjct: 160 NNSLSMVQLLLQ-HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL-KNCHND 217

Query: 76  SALHFAALSGKDDVCACLLSAGA 98
           + L  A      D+     +  A
Sbjct: 218 TPLMVARSRRVIDILRGKATRPA 240

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.5 bits (192), Expect = 3e-16
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 5/84 (5%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLD----HGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
           DE G TPL  A  +GN      L++     G +++   +    + LH A ++    V   
Sbjct: 6   DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRL 64

Query: 93  LLSAGAKSYATNSVGRTASQMAAF 116
           L++AGA   A +  G+TA+ +A  
Sbjct: 65  LVTAGASPMALDRHGQTAAHLACE 88

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 76.0 bits (188), Expect = 9e-16
 Identities = 26/106 (24%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA----DVNSGRH 71
                 V+ L++         D HG T    A    +    + LLD  A    D+ + R+
Sbjct: 56  TTLPSVVRLLVT-AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RN 113

Query: 72  EHGYSALHFAALSGKDDVCACLLSAGAKSYATNS-VGRTASQMAAF 116
             G +ALH A  +   +    LL  GA   A +   GR+    A  
Sbjct: 114 YDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 89.4 bits (223), Expect = 4e-21
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 1/102 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
              D++ V+KL +   +     +    TPL  AA      + + LL HGADV++ + + G
Sbjct: 17  KAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGG 75

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
              LH A   G  +V   L+  GA     +    T    AA 
Sbjct: 76  LVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAA 117

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 87.4 bits (218), Expect = 2e-20
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             N +  V+ LL  H   V   D+ G+ PL +A   G+ ++ +LL+ HGA VN       
Sbjct: 51  GYNRVSVVEYLLQ-HGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV-ADLWK 108

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           ++ LH AA  GK ++C  LL  GA     N  G T   +  
Sbjct: 109 FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK 149

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 75.1 bits (186), Expect = 4e-16
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S    +  + L+  H   V++ D    TPL  AA KG  +IC+LLL HGAD    ++  G
Sbjct: 84  SYGHYEVAELLVK-HGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK-KNRDG 141

Query: 75  YSALHFAALSGKDDVCACLLSAGA 98
            + L      G  D+   L    A
Sbjct: 142 NTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 72.0 bits (178), Expect = 4e-15
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 2/81 (2%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLD-HGADVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
           +      L  AA  G+ +  + L      +          + LHFAA   +  V   LL 
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 96  AGAKSYATNSVGRTASQMAAF 116
            GA  +A +  G      A  
Sbjct: 64  HGADVHAKDKGGLVPLHNACS 84

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 88.6 bits (221), Expect = 7e-21
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++ ++  +   +   +  ++  DE G TPL  AA  G   + + LL +GAD      +  
Sbjct: 12  AQGEMLYLATRIE-QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGR 69

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            SAL  A   G  D+   LL  G      +  G T    A  
Sbjct: 70  ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVH 111

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 86.3 bits (215), Expect = 5e-20
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 1/93 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           + L ++     L  +   + L  A  KG   I ++LLD G DVN     +G + L +A  
Sbjct: 53  EFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE-YDWNGGTPLLYAVH 111

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
                    LL +GA        G  +  +A  
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNSMDLAVA 144

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 83.2 bits (207), Expect = 5e-19
 Identities = 16/78 (20%), Positives = 27/78 (34%), Gaps = 1/78 (1%)

Query: 39  HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
                +   A +G        ++    +N    E G++ L +AA  G+  V   LL  GA
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 99  KSYATNSVGRTASQMAAF 116
                     +A  +A  
Sbjct: 61  DPQLLGKGRESALSLACS 78

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 82.8 bits (206), Expect = 7e-19
 Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           K+L +  + V+ YD +G TPL +A +  + +  ++LL+ GAD      + GY+++  A  
Sbjct: 86  KMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI-ETDSGYNSMDLAVA 144

Query: 84  SGKDDVCACLLSAGAK 99
            G   V   + S   K
Sbjct: 145 LGYRSVQQVIESHLLK 160

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 54.3 bits (132), Expect = 7e-09
 Identities = 9/53 (16%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
             N +  V+ LL        +  + G   +  A   G + + Q++  H   + 
Sbjct: 111 HGNHVKCVKMLLE-SGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 90.6 bits (226), Expect = 7e-21
 Identities = 20/101 (19%), Positives = 38/101 (37%), Gaps = 1/101 (0%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
               +  ++L+      V   D+  +T L  AA      + +  +  GA V+    +   
Sbjct: 19  YGIYERCRELVE-AGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNS 77

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           + LH+A   G   +   L+  GA     +  G +   +AA 
Sbjct: 78  TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQ 118

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 90.6 bits (226), Expect = 9e-21
 Identities = 36/93 (38%), Positives = 48/93 (51%), Gaps = 1/93 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGYSALHFAA 82
             L      VD+ D++GMTPL  AAY+ +     +LLL     VN G   H  +ALH+A 
Sbjct: 126 AYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAV 185

Query: 83  LSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           L+G   V + LL AGA   A N  G +A  +A 
Sbjct: 186 LAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 83.3 bits (207), Expect = 3e-18
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 33  VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
           +   D++    +  A   G  + C+ L++ G DV     +   + LH+AA++ + D+   
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ-PDKENVTLLHWAAINNRIDLVKY 60

Query: 93  LLSAGA-KSYATNSVGRTASQMAAF 116
            +S GA        +  T    A  
Sbjct: 61  YISKGAIVDQLGGDLNSTPLHWATR 85

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 80.2 bits (199), Expect = 3e-17
 Identities = 22/95 (23%), Positives = 35/95 (36%), Gaps = 3/95 (3%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
             L ++     L D  G + +  AA  G+  I   L+  G DV+    ++G + L +AA 
Sbjct: 93  VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM-MDQNGMTPLMWAAY 151

Query: 84  SG-KDDVCACLLSAGA-KSYATNSVGRTASQMAAF 116
                D    LL+     +        TA   A  
Sbjct: 152 RTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVL 186

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 76.3 bits (189), Expect = 6e-16
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 24  KLLSEHKLRVDLYDE-HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
           +LL    + V+L D+ H  T L  A   GN  +  LLL+ GA+V++ ++  G SAL  A 
Sbjct: 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA-QNIKGESALDLAK 218

Query: 83  LSGKDDVCACLLSAGAKSYATN 104
                 +   L  A       N
Sbjct: 219 QRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 49.4 bits (119), Expect = 7e-07
 Identities = 9/53 (16%), Positives = 16/53 (30%), Gaps = 1/53 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
              +   +  LL      VD  +  G + L  A  + N  +   L +      
Sbjct: 186 LAGNTTVISLLLE-AGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKG 237

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 90.6 bits (226), Expect = 8e-21
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           K   + VQ LLS  ++ V+  D+ G TP+  A    +  + +LLL  G+D+N  R     
Sbjct: 87  KGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI-RDNEEN 145

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
             LH+AA SG  D+   LL+A    +A N  G +   +AA 
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAAR 186

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.9 bits (219), Expect = 7e-20
 Identities = 29/102 (28%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               +D V+ LLS     +++ D      L  AA+ G   I ++LL    D+++  + HG
Sbjct: 120 EYKHVDLVKLLLS-KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA-VNIHG 177

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            S LH AA   + D     LS  +     N  G T  Q A+ 
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASL 219

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 87.1 bits (217), Expect = 1e-19
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 33  VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
             +  ++  +PL  AA  G+  IC +L+  GA++++   E   + L  AA +   +    
Sbjct: 4   FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKY 62

Query: 93  LLSAGAKSYATNSVGRTASQMAAF 116
           L+ AGA     ++ G T   +AA 
Sbjct: 63  LIKAGALVDPKDAEGSTCLHLAAK 86

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 86.3 bits (215), Expect = 3e-19
 Identities = 27/103 (26%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               +D    L+      +D   E   TPL  AA   + +  + L+  GA V+  +   G
Sbjct: 20  EAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEG 77

Query: 75  YSALHFAALSGKDDVCACLLSAGAKS-YATNSVGRTASQMAAF 116
            + LH AA  G  +V   LLS G       +  G T    A  
Sbjct: 78  STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE 120

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 78.6 bits (195), Expect = 9e-17
 Identities = 17/84 (20%), Positives = 36/84 (42%), Gaps = 1/84 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           + +   ++ ++L   K  +   + HG +PL  AA +       L L   +DV   +++ G
Sbjct: 152 AFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL-KNKEG 210

Query: 75  YSALHFAALSGKDDVCACLLSAGA 98
            + L  A+L+ +      +  A  
Sbjct: 211 ETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 47.4 bits (114), Expect = 3e-06
 Identities = 14/51 (27%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
            +N  D V   LS     V L ++ G TPLQ A+          +     D
Sbjct: 186 RENRYDCVVLFLS-RDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 89.6 bits (223), Expect = 1e-20
 Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHG 74
           + ++  +++ L  +++ V+  D+ G T L  A + G+K I ++L      ++N  +++ G
Sbjct: 83  RGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLG 140

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            +ALH AA  G  D+   LL+ GA++   N   + A  MA 
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMAT 181

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 1/102 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
                D V+ L ++  + ++  ++ G T L  AA+KG   I QLLL  GA  +  R+   
Sbjct: 115 HGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL-RNIEK 173

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
             A   A  +    +        A    +N+      + +  
Sbjct: 174 KLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDL 215

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)

Query: 29  HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD 88
               V    E    PL  AA +GN    +  LD+   VN    + G +AL++A   G  D
Sbjct: 62  PSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKD 120

Query: 89  VCACLLS-AGAKSYATNSVGRTASQMAAF 116
           +   L +    +    N +G TA   AA+
Sbjct: 121 IVEMLFTQPNIELNQQNKLGDTALHAAAW 149

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 66.1 bits (162), Expect = 1e-12
 Identities = 18/101 (17%), Positives = 25/101 (24%), Gaps = 7/101 (6%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
             +     +L  E    +    +   T       KG        L     V   + E   
Sbjct: 22  TFEPRTPDELYIEEG-DIIYITDMSDTNWWKGTSKGR-----TGLIPSNYVA-EQAESID 74

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           + LH AA  G        L         +  G TA   A  
Sbjct: 75  NPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACH 115

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 62.3 bits (152), Expect = 3e-11
 Identities = 9/80 (11%), Positives = 16/80 (20%), Gaps = 6/80 (7%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
            + G   +  A Y    +    L     D+     +   +        G+       L  
Sbjct: 9   VKPGQVKVFRALYTFEPRTPDELYIEEGDII-YITDMSDTNWWKGTSKGRTG-----LIP 62

Query: 97  GAKSYATNSVGRTASQMAAF 116
                            AA 
Sbjct: 63  SNYVAEQAESIDNPLHEAAK 82

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 89.4 bits (223), Expect = 1e-20
 Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 4/106 (3%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG--RHE 72
            +N+   VQ+LL      +   D+ G  PL  +      +I   LL    +VN      +
Sbjct: 11  MENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDD 70

Query: 73  HGYSALHFAALSGKDDVCACLLS--AGAKSYATNSVGRTASQMAAF 116
            G++  H A   G  +V   L             + G T   +A  
Sbjct: 71  SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVG 116

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 82.5 bits (205), Expect = 4e-18
 Identities = 26/105 (24%), Positives = 42/105 (40%), Gaps = 5/105 (4%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLY--DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
           S  +++ V+ L     L+ DL      G+T L  A  K   ++ Q L+++GA V   + +
Sbjct: 81  SVGNLEVVKSLYD-RPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-KDK 138

Query: 73  HGYSALHFAALSGKDDVCACLLSAG-AKSYATNSVGRTASQMAAF 116
                LH AA  G   +   L   G +     +  G T    A  
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA 183

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 72.5 bits (179), Expect = 1e-14
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 40  GMTPLQHAAYKGNKQ-ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
              PL  A  +     + +LL    + +   + + G   LH++      ++ + LLS   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ-KDQDGRIPLHWSVSFQAHEITSFLLSKME 60

Query: 99  ----KSYATNSVGRTASQMAAF 116
                 Y  +S G T   +A  
Sbjct: 61  NVNLDDYPDDS-GWTPFHIACS 81

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.8 bits (159), Expect = 4e-12
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 5/82 (6%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD-HGADVNSGRHEH 73
           S   +  ++ L    K  V+  D+ G TPL HA  +G+     LL++ +GA+ +      
Sbjct: 149 SVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL-VDNK 207

Query: 74  GYSALHFAALSGKDDVCACLLS 95
           G  A   A     + V    L+
Sbjct: 208 GAKAEDVAL---NEQVKKFFLN 226

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 88.7 bits (221), Expect = 2e-20
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++ D   V+++L +   +VD  D  G TPL  A +  + +I + L+D GAD+N  ++   
Sbjct: 14  NQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSIS 72

Query: 75  YSALHFAALSGKDDVCACLLSAGAKS-YATNSVGRTASQMAAF 116
            S   +A   G+ ++ A +L          N  G  A   AA 
Sbjct: 73  DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAE 115

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 82.1 bits (204), Expect = 3e-18
 Identities = 15/80 (18%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
                  L+ A  +  K++ ++L D    V+      G + L+ A  +   ++   L+  
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDR 61

Query: 97  GAKSYATNSVGRTASQMAAF 116
           GA     NS+  +    A  
Sbjct: 62  GADINLQNSISDSPYLYAGA 81

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 77.9 bits (193), Expect = 8e-17
 Identities = 26/108 (24%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG-ADVNSGRHEH 73
           ++   + +  +L      ++ ++ +G   L  AA KG+    +LLL+ G  D++  +++ 
Sbjct: 81  AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF-QNDF 139

Query: 74  GYSALHFAALSGKD-----DVCACLLSAGAKSYATNSVGRTASQMAAF 116
           GY+AL  A    +      D+   L+  GA     ++ GRTA   A  
Sbjct: 140 GYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQ 187

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.5 bits (166), Expect = 4e-13
 Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 6/86 (6%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAA-----YKGNKQICQLLLDHGADVNSG 69
            K  IDNV+ LL + +  +D  ++ G T L  A       +  + I +LL+++GAD +  
Sbjct: 115 EKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI- 173

Query: 70  RHEHGYSALHFAALSGKDDVCACLLS 95
           +   G +A+ +A   G  ++   L  
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 6e-06
 Identities = 12/39 (30%), Positives = 20/39 (51%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
           KLL E+     + D  G T + +A  KG  +I ++L  +
Sbjct: 162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 89.2 bits (221), Expect = 2e-20
 Identities = 31/101 (30%), Positives = 46/101 (45%), Gaps = 1/101 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               +D +++ +   K      D+   T L  A   G+ +I + LL  G  VN  + + G
Sbjct: 15  YSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAG 73

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           +S LH AA +G D++   LL  GA   A N  G T    AA
Sbjct: 74  WSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAA 114

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 76.8 bits (189), Expect = 3e-16
 Identities = 13/77 (16%), Positives = 28/77 (36%), Gaps = 1/77 (1%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
            +     A      ++ + +L   +       +   +ALH+A  +G  ++   LL  G  
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATR-TDQDSRTALHWACSAGHTEIVEFLLQLGVP 65

Query: 100 SYATNSVGRTASQMAAF 116
               +  G +   +AA 
Sbjct: 66  VNDKDDAGWSPLHIAAS 82

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 72.2 bits (177), Expect = 1e-14
 Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S    + V+ LL    + V+  D+ G +PL  AA  G  +I + LL  GA VN+  +++G
Sbjct: 49  SAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNG 106

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + LH+AA   + ++   LL  GA   A +    TA   AA 
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAA 148

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 71.1 bits (174), Expect = 4e-14
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 1/110 (0%)

Query: 6   EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
            G     + +  +   +  +L E     D  D +  T +  AA KGN ++  +LL + A 
Sbjct: 105 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS 164

Query: 66  VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            N  +   G + LH A    + +    L++ GA  Y  N   +T  Q+A 
Sbjct: 165 TNI-QDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK 213

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 70.3 bits (172), Expect = 7e-14
 Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 1/101 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           +    D + K L      V+  +++G TPL +AA K   +I  +LL+ GA+ ++ +  + 
Sbjct: 81  ASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA-KDHYD 139

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            +A+H AA  G   +   LL   A +   ++ G T   +A 
Sbjct: 140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC 180

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 6   EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
           EGN         +     K L      + + ++   TPLQ A   G   +    L  G +
Sbjct: 171 EGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEE 228

Query: 66  VN 67
            +
Sbjct: 229 AS 230

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 90.3 bits (225), Expect = 2e-20
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 13  FISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
            I+      ++  LS         D HG +   +A    N ++   LL+ GA  N     
Sbjct: 6   RINTWKSKQLKSFLSSKD--TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL---L 60

Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
                LH AA      +   LL +G      +  G TA   A  
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVD 104

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 82.6 bits (205), Expect = 9e-18
 Identities = 17/102 (16%), Positives = 35/102 (34%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           +  D   V+ LL    L    +D+ G T L +A   GN Q  +L +     +        
Sbjct: 71  TLEDTKIVKILLF-SGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW 129

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            ++ + A +     + +  LS    ++       +   +   
Sbjct: 130 KTSFYHAVMLNDVSIVSYFLSEIPSTFDLAI-LLSCIHITIK 170

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 78.7 bits (195), Expect = 2e-16
 Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 4/101 (3%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHG-MTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             ++  V+  +     R+  Y + G  T   HA    +  I    L              
Sbjct: 105 SGNMQTVKLFVK-KNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL--AIL 161

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            S +H    +G  D+   LL     +   NS+        A
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA 202

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.9 bits (180), Expect = 2e-14
 Identities = 14/85 (16%), Positives = 28/85 (32%), Gaps = 4/85 (4%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             ND+  V   LSE            ++ +      G+  +  LLLD+    N+  +   
Sbjct: 138 MLNDVSIVSYFLSEI--PSTFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNT-NNSLL 194

Query: 75  YS-ALHFAALSGKDDVCACLLSAGA 98
           +   +  A  +   ++   L     
Sbjct: 195 FIPDIKLAIDNKDIEMLQALFKYDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 71.4 bits (176), Expect = 5e-14
 Identities = 10/96 (10%), Positives = 28/96 (29%), Gaps = 10/96 (10%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQH-AAYKGNKQICQLLLDHGADVNSGRHEHG 74
              +D +  LL  +    +  +     P    A    + ++ Q L  +  ++        
Sbjct: 171 NGHVDMMILLLD-YMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY------- 222

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            SA     L    ++   ++    +  + +      
Sbjct: 223 -SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLD 257

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 2/41 (4%), Positives = 12/41 (29%), Gaps = 1/41 (2%)

Query: 42  TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
           +         + +I +++++   +  S         +    
Sbjct: 223 SANLENVLLDDAEIAKMIIEKHVEYKS-DSYTKDLDIVKNN 262

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 87.1 bits (217), Expect = 2e-20
 Identities = 30/103 (29%), Positives = 39/103 (37%), Gaps = 3/103 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
              + +  ++LL       DL D  G   +  AA  G     Q LL+  ADVN      G
Sbjct: 46  KLGNPEIARRLLL-RGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI-EDNEG 103

Query: 75  YSALHFAALSGKDDVCACLLSAGAKS-YATNSVGRTASQMAAF 116
              LH AA  G   V   L+   A +    N  G TA  +A  
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARL 146

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 83.6 bits (208), Expect = 4e-19
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++ D++ +  LL  + + V+  +  G T L      GN +I + LL  GA+ +  +   G
Sbjct: 14  ARGDLEQLTSLLQ-NNVNVNAQNGFGRTAL-QVMKLGNPEIARRLLLRGANPDL-KDRTG 70

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           ++ +H AA +G  D    LL   A     ++ G     +AA 
Sbjct: 71  FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAK 112

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.5 bits (187), Expect = 2e-16
 Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 3/84 (3%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHG 74
              +D +Q LL   +  V++ D  G  PL  AA +G+ ++ + L+ H A +V   R+  G
Sbjct: 80  AGFLDTLQTLLE-FQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH-RNHKG 137

Query: 75  YSALHFAALSGKDDVCACLLSAGA 98
            +A   A L G+++V + + + GA
Sbjct: 138 DTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 75.1 bits (186), Expect = 4e-16
 Identities = 21/80 (26%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
            E     L  AA +G+ +    LL +  +VN+ ++  G +AL    L G  ++   LL  
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLR 59

Query: 97  GAKSYATNSVGRTASQMAAF 116
           GA     +  G      AA 
Sbjct: 60  GANPDLKDRTGFAVIHDAAR 79

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 47.0 bits (113), Expect = 2e-06
 Identities = 10/50 (20%), Positives = 19/50 (38%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA 64
            +  +  V+ L+      V   +  G T    A   G  ++  L+  +GA
Sbjct: 112 KEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 86.8 bits (216), Expect = 2e-20
 Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++  ++ V+ LL       +  + +G  P+Q     G+ ++ +LLL HGA+ N       
Sbjct: 21  ARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMMM-GSARVAELLLLHGAEPNCADPATL 78

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
              +H AA  G  D    L  AGA+    ++ GR    +A 
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAE 119

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 77.9 bits (193), Expect = 4e-17
 Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 2/90 (2%)

Query: 24  KLLSEHKLRVDLYDEHGMT-PLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
           +LL  H    +  D   +T P+  AA +G      +L   GA ++  R   G   +  A 
Sbjct: 61  ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-RDAWGRLPVDLAE 119

Query: 83  LSGKDDVCACLLSAGAKSYATNSVGRTASQ 112
             G  DV   L +A   +  +N     A++
Sbjct: 120 ELGHRDVARYLRAAAGGTRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 76.4 bits (189), Expect = 1e-16
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 2/74 (2%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
            E     L  AA +G  +  + LL+ GA+ N+  + +G   +    + G   V   LL  
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMMM-GSARVAELLLLH 66

Query: 97  GAKSYATNSVGRTA 110
           GA+    +    T 
Sbjct: 67  GAEPNCADPATLTR 80

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
            +L     R+D+ D  G  P+  A   G++ + + L              G +     A 
Sbjct: 95  VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR------GSNHARIDAA 148

Query: 84  SGKDDV 89
            G  D+
Sbjct: 149 EGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 17/57 (29%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 60  LDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           ++  A  +    E     L  AA  G+ +    LL AGA   A NS GR   Q+   
Sbjct: 1   MEPAAGSS---MEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMM 54

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 88.4 bits (220), Expect = 4e-20
 Identities = 27/105 (25%), Positives = 43/105 (40%), Gaps = 5/105 (4%)

Query: 16  KNDIDNVQKLLS-----EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR 70
           +  + +V  L            +   + +G T L  A+  G   I +LL+  GADVN+  
Sbjct: 88  QGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE 147

Query: 71  HEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
             +G +ALH A      D+ + LL  GA        G +  Q+  
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTW 192

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 87.6 bits (218), Expect = 8e-20
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 7/108 (6%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            K     V + +      ++  +    TPL  A      +I + LL  G D    R   G
Sbjct: 20  EKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRG 78

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSY------ATNSVGRTASQMAAF 116
            + LH A   G       L  +    +      ATN  G T   +A+ 
Sbjct: 79  NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASI 126

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 80.7 bits (200), Expect = 2e-17
 Identities = 17/79 (21%), Positives = 22/79 (27%), Gaps = 1/79 (1%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
             +G T L  A    N  +  LLL  GADVN      GYS            +   L   
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNR-VTYQGYSPYQLTWGRPSTRIQQQLGQL 206

Query: 97  GAKSYATNSVGRTASQMAA 115
             ++               
Sbjct: 207 TLENLQMLPESEDEESYDT 225

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 75.7 bits (187), Expect = 1e-15
 Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 37  DEHGMTPLQHAAYKGNK----QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
            E G + L  A     K    ++ + +    A +N  ++    + LH A ++ + ++   
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEA 63

Query: 93  LLSAGAKSYATNSVGRTASQMAA 115
           LL AG      +  G T   +A 
Sbjct: 64  LLGAGCDPELRDFRGNTPLHLAC 86

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 2/74 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
             + D V  LL      V+     G +P Q    + + +I Q L     +          
Sbjct: 161 LQNPDLVSLLLK-CGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ-MLPESE 218

Query: 76  SALHFAALSGKDDV 89
               +   S   + 
Sbjct: 219 DEESYDTESEFTEF 232

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 85.6 bits (213), Expect = 4e-20
 Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++  ++ V++LL       +  +  G  P+      G+ Q+ +LLL HGA+ N       
Sbjct: 21  ARGQVETVRQLLE-AGADPNALNRFGRRPI-QVMMMGSAQVAELLLLHGAEPNCADPATL 78

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
              +H AA  G  D    L  AGA+    ++ GR    +A 
Sbjct: 79  TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAE 119

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 78.6 bits (195), Expect = 1e-17
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 33  VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
           + +        L  AA +G  +  + LL+ GAD N+  +  G   +      G   V   
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMM-MGSAQVAEL 62

Query: 93  LLSAGAKSYATNSVGRTA 110
           LL  GA+    +    T 
Sbjct: 63  LLLHGAEPNCADPATLTR 80

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 18/85 (21%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMT-PLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
                   + LL  H    +  D   +T P+  AA +G      +L   GA ++      
Sbjct: 53  MMGSAQVAELLLL-HGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV-CDAW 110

Query: 74  GYSALHFAALSGKDDVCACLLSAGA 98
           G   +  A   G  D+   L +A  
Sbjct: 111 GRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
            +L     R+D+ D  G  P+  A  +G++ I + L     D
Sbjct: 95  VVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 51.7 bits (125), Expect = 3e-08
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 63  GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
              ++        + L  AA  G+ +    LL AGA   A N  GR   Q+   
Sbjct: 2   SPGIHM-LGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM 54

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 86.3 bits (215), Expect = 5e-20
 Identities = 35/102 (34%), Positives = 52/102 (50%), Gaps = 2/102 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
                D V+ L++ +   V+  D  G TPL  AA+ G+ +I ++LL +GADVN+     G
Sbjct: 23  RAGRDDEVRILMA-NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAG 80

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + L  AAL G  ++   LL  GA   A +  G T   +AA 
Sbjct: 81  MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAM 122

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 85.9 bits (214), Expect = 8e-20
 Identities = 35/101 (34%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               ++ V+ LL  +   V+  D  GMTPL+ AA  G+ +I ++LL +GADVN+     G
Sbjct: 56  FNGHLEIVEVLLK-NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-NDMEG 113

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           ++ LH AA+ G  ++   LL  GA   A +  G+TA  ++ 
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISI 154

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 80.9 bits (201), Expect = 5e-18
 Identities = 25/77 (32%), Positives = 38/77 (49%), Gaps = 1/77 (1%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
               L  AA  G     ++L+ +GADVN+     G++ LH AA +G  ++   LL  GA 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGAD 72

Query: 100 SYATNSVGRTASQMAAF 116
             A +  G T  ++AA 
Sbjct: 73  VNAVDHAGMTPLRLAAL 89

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 73.6 bits (182), Expect = 1e-15
 Identities = 25/80 (31%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
              ++ V+ LL  +   V+  D  G TPL  AA  G+ +I ++LL +GADVN+ + + G 
Sbjct: 90  FGHLEIVEVLLK-NGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA-QDKFGK 147

Query: 76  SALHFAALSGKDDVCACLLS 95
           +A   +  +G +D+   L  
Sbjct: 148 TAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 45.0 bits (108), Expect = 9e-06
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 62  HGADVNSGRHEHG---YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            G+  +   H HG      L  AA +G+DD    L++ GA   A ++ G T   +AAF
Sbjct: 2   RGSHHH---HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAF 56

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 40.0 bits (95), Expect = 4e-04
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
           ++L ++   V+  D+ G T    +   GN+ + ++L   
Sbjct: 130 EVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 84.7 bits (211), Expect = 5e-20
 Identities = 29/83 (34%), Positives = 43/83 (51%), Gaps = 1/83 (1%)

Query: 34  DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
               + G TPL +AA  G+ +  + LL  GADVN+ R + G + LH AA +G  ++   L
Sbjct: 3   MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLL 61

Query: 94  LSAGAKSYATNSVGRTASQMAAF 116
           L+ GA   A +  G T   +A  
Sbjct: 62  LAKGADVNARSKDGNTPEHLAKK 84

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 83.2 bits (207), Expect = 1e-19
 Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 2/96 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
                + V+KLLS     V+   + G TPL  AA  G+ +I +LLL  GADVN+ R + G
Sbjct: 18  KNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDG 75

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
            +  H A  +G  ++   L + GA   A +      
Sbjct: 76  NTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 85.1 bits (212), Expect = 8e-20
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 2/100 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
                  + LL    +  D   +   TPL  AA +G+  I ++LL HGADVN+ +     
Sbjct: 44  YGHFSTTEVLLR-AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA-KDMLKM 101

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           +ALH+A      +V   L+  GA  +  +   +TA  ++ 
Sbjct: 102 TALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISI 141

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 82.4 bits (205), Expect = 7e-19
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
           D  G +PL  AA  G+    ++LL  G   ++ R +   + LH AA  G  ++   LL  
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKH 89

Query: 97  GAKSYATNSVGRTASQMAAF 116
           GA   A + +  TA   A  
Sbjct: 90  GADVNAKDMLKMTALHWATE 109

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 79.7 bits (198), Expect = 6e-18
 Identities = 25/77 (32%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
               L  AA  G     ++L+ +GA   +     G S LH AA  G       LL AG  
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTD--WLGTSPLHLAAQYGHFSTTEVLLRAGVS 59

Query: 100 SYATNSVGRTASQMAAF 116
             A   V RT   MAA 
Sbjct: 60  RDARTKVDRTPLHMAAS 76

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.3 bits (171), Expect = 3e-14
 Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 2/79 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S+   + V+ LL  H   V+  D   MT L  A    ++++ +LL+ +GADV++ + +  
Sbjct: 76  SEGHANIVEVLLK-HGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFC 133

Query: 75  YSALHFAALSGKDDVCACL 93
            +A   +  +G +D+   L
Sbjct: 134 KTAFDISIDNGNEDLAEIL 152

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 87.3 bits (217), Expect = 9e-20
 Identities = 31/102 (30%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
              +++ VQ+ +          +E G+T L +A    N  I   L+  GA+VNS    HG
Sbjct: 30  LTGELEVVQQAVK-EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS-PDSHG 87

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATN-SVGRTASQMAA 115
           ++ LH AA      +C  L+  GA  +AT  S G TA +   
Sbjct: 88  WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCD 129

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 80.8 bits (200), Expect = 2e-17
 Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 2/94 (2%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
             L      V+  D HG TPL  AA   +  IC  L+ HGA + +     G +A      
Sbjct: 71  DFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP 130

Query: 84  S--GKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
              G  D    L          NS    A    +
Sbjct: 131 YREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 73.8 bits (182), Expect = 3e-15
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 3/97 (3%)

Query: 22  VQKLLSE--HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           ++ +L +     +      + +  L  AA  G  ++ Q  +    D +   +E G +ALH
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP-NEEGITALH 59

Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            A       +   L++AGA   + +S G T    AA 
Sbjct: 60  NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAAS 96

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 17/106 (16%), Positives = 25/106 (23%), Gaps = 8/106 (7%)

Query: 15  SKNDIDNVQKLLSE--HKLRVDLYDEHGMTPLQHAA--YKGNKQICQLLLDHGADVNSGR 70
           S ND      L+          L D  G T  +      +G       L D    +    
Sbjct: 96  SCNDTVICMALVQHGAAIFATTLSD--GATAFEKCDPYREGYADCATYLADVEQSMGLMN 153

Query: 71  HEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
                 AL   + +   D  +            +    T    AA 
Sbjct: 154 -SGAVYALWDYS-AEFGDELSFREGESVTVLRRDGPEETDWWWAAL 197

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 9/75 (12%), Positives = 22/75 (29%), Gaps = 2/75 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            +    +    L++ +  + L +   +  L   +                 V   R    
Sbjct: 131 YREGYADCATYLADVEQSMGLMNSGAVYALWDYS-AEFGDELSFREGESVTVLR-RDGPE 188

Query: 75  YSALHFAALSGKDDV 89
            +   +AAL G++  
Sbjct: 189 ETDWWWAALHGQEGY 203

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 84.0 bits (209), Expect = 2e-19
 Identities = 34/101 (33%), Positives = 55/101 (54%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
                D V+ L++ +   V+  DE+G+TPL  A   G+ +I ++LL +GADVN+     G
Sbjct: 23  RAGQDDEVRILMA-NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIG 80

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           ++ LH AA  G  ++   LL  GA   A +  G+TA  ++ 
Sbjct: 81  FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISI 121

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 75.5 bits (187), Expect = 1e-16
 Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 1/77 (1%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
               L  AA  G     ++L+ +GADVN+ + E+G + L+ A   G  ++   LL  GA 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGAD 72

Query: 100 SYATNSVGRTASQMAAF 116
             A +++G T   +AAF
Sbjct: 73  VNAVDAIGFTPLHLAAF 89

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 72.8 bits (180), Expect = 1e-15
 Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 2/81 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           +   ++ V+ LL  +   V+  D  G TPL  AA+ G+ +I ++LL HGADVN+ + + G
Sbjct: 56  AHGHLEIVEVLLK-NGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA-QDKFG 113

Query: 75  YSALHFAALSGKDDVCACLLS 95
            +A   +  +G +D+   L  
Sbjct: 114 KTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 39.7 bits (94), Expect = 4e-04
 Identities = 9/39 (23%), Positives = 19/39 (48%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
           ++L +H   V+  D+ G T    +   GN+ + ++L   
Sbjct: 97  EVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 87.1 bits (217), Expect = 2e-19
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S +     Q L+      +D     G TPL  AA    + + + L++  ADVN+   + G
Sbjct: 99  SADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLG 157

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            SALH+AA     D    LL  GA     N+   T   +AA 
Sbjct: 158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAR 199

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 86.4 bits (215), Expect = 3e-19
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 1/101 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++  ++ + + L      V+  D+ G + L  AA   N     +LL +GA+ +  ++   
Sbjct: 132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNRE 190

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            + L  AA  G  +    LL   A    T+ + R    +A 
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 231

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 82.9 bits (206), Expect = 5e-18
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHG 74
            +  D  ++LL       ++ D  G TPL  A     + + Q+L+ + A D+++ R   G
Sbjct: 67  YSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDG 124

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + L  AA    + +   L+++ A   A + +G++A   AA 
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 166

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.0 bits (183), Expect = 4e-15
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
            N++D    LL  +    D+ +    TPL  AA +G+ +  ++LLDH A+ +        
Sbjct: 167 VNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDR 224

Query: 76  SALHFAALSGKDDVCACLLSAGA 98
                A      D+   L     
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHH 247

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 74.0 bits (183), Expect = 5e-15
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 37  DEHGMTPLQHAAYKG-------------NKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
              G TPL  A+  G                +    +  GA +++     G +ALH AA 
Sbjct: 7   GPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAAR 66

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
             + D    LL A A +   +++GRT    A  
Sbjct: 67  YSRSDAAKRLLEASADANIQDNMGRTPLHAAVS 99

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.8 bits (120), Expect = 6e-07
 Identities = 10/44 (22%), Positives = 17/44 (38%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
           K+L +H    D+ D     P   A  + +  I +LL       +
Sbjct: 207 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 86.3 bits (215), Expect = 2e-19
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
                 ++ L++     V+  D+ G + L  AA   N     +LL +GA+ +  ++    
Sbjct: 102 LAVEGMLEDLIN-SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-QNNREE 159

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           + L  AA  G  +    LL   A    T+ + R    +A 
Sbjct: 160 TPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQ 199

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 83.2 bits (207), Expect = 2e-18
 Identities = 25/102 (24%), Positives = 48/102 (47%), Gaps = 3/102 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHG 74
            +  D  ++LL       ++ D  G TPL  A     + + Q+L+ + A D+++ R   G
Sbjct: 35  YSRSDAAKRLLE-ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDG 92

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + L  AA    + +   L+++ A   A + +G++A   AA 
Sbjct: 93  TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAA 134

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.6 bits (195), Expect = 7e-17
 Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 16/106 (15%)

Query: 13  FISKN-DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH 71
           FI +   + N               D  G T L  AA        + LL+  AD N  + 
Sbjct: 10  FIYQGASLHNQT-------------DRTGETALHLAARYSRSDAAKRLLEASADANI-QD 55

Query: 72  EHGYSALHFAALSGKDDVCACLLSAGAKSY-ATNSVGRTASQMAAF 116
             G + LH A  +    V   L+   A    A    G T   +AA 
Sbjct: 56  NMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAAR 101

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 77.5 bits (192), Expect = 2e-16
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
            N++D    LL  +    D+ +    TPL  AA +G+ +  ++LLDH A+ +        
Sbjct: 135 VNNVDAAVVLLK-NGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI-TDHMDR 192

Query: 76  SALHFAALSGKDDVCACLLSAGA 98
                A      D+   L     
Sbjct: 193 LPRDIAQERMHHDIVRLLDEYNL 215

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 65.1 bits (160), Expect = 3e-12
 Identities = 17/66 (25%), Positives = 28/66 (42%)

Query: 51  GNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTA 110
               +    +  GA +++     G +ALH AA   + D    LL A A +   +++GRT 
Sbjct: 2   DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTP 61

Query: 111 SQMAAF 116
              A  
Sbjct: 62  LHAAVS 67

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 52.0 bits (126), Expect = 8e-08
 Identities = 11/48 (22%), Positives = 20/48 (41%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH 71
           K+L +H    D+ D     P   A  + +  I +LL ++    +   H
Sbjct: 175 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 83.2 bits (207), Expect = 2e-19
 Identities = 41/102 (40%), Positives = 60/102 (58%), Gaps = 1/102 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           ++N    V KLL E    V+  D++G TPL  AA  G+ ++ +LLL+ GADVN+ + ++G
Sbjct: 10  ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNG 68

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + LH AA +G  +V   LL AGA   A +  GRT   +AA 
Sbjct: 69  RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 110

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 81.2 bits (202), Expect = 9e-19
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 39  HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
           +G TPL  AA  G+ ++ +LLL+ GADVN+ + ++G + LH AA +G  +V   LL AGA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 99  KSYATNSVGRTASQMAAF 116
              A +  GRT   +AA 
Sbjct: 60  DVNAKDKNGRTPLHLAAR 77

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 78.2 bits (194), Expect = 1e-17
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           KLL E    V+  D++G TPL  AA  G+ ++ +LLL+ GADVN+ + ++G + LH AA 
Sbjct: 52  KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAAR 110

Query: 84  SGKDDVCACLLSAGA 98
           +G  +V   LL AGA
Sbjct: 111 NGHLEVVKLLLEAGA 125

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 84.7 bits (211), Expect = 3e-19
 Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 12/116 (10%)

Query: 7   GNEIFDFISKNDIDNVQKLLSE--HKLRVDLY----DEHGMTPLQHAAYKGNKQICQLLL 60
           G+ +       + + V+K+  E      +D      D +  TPL  A   G +     L+
Sbjct: 1   GSHM-----DKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 61  DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           ++   +   +   G +AL +A  + +  +   LLS G+     +  G+T    +  
Sbjct: 56  ENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSII 110

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 83.2 bits (207), Expect = 9e-19
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 1/102 (0%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               ++N    L E+  +++  D  G T L  A       I + LL  G++VN+ +   G
Sbjct: 43  CMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSG 101

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + L ++ + G  ++   LL  GA     N  G T   +A+ 
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASK 143

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 82.8 bits (206), Expect = 2e-18
 Identities = 33/101 (32%), Positives = 48/101 (47%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             N +   +KLLS     V+  D  G TPL  +   G  ++   LL+HGA+VN  R+  G
Sbjct: 77  KNNRLGIAEKLLS-KGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND-RNLEG 134

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            + L  A+  G+ ++   LL  GA   A +  G TA   A 
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR 175

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 70.9 bits (175), Expect = 2e-14
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
               +    LL  H   V+  +  G TPL  A+  G  +I + LL+ GAD+++ R   G 
Sbjct: 111 FGYSEMSYFLLE-HGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA-RDLTGL 168

Query: 76  SALHFAALSGKDDVCACLLSAGA 98
           +A   A + G+ +V         
Sbjct: 169 TAEASARIFGRQEVIKIFTEVRR 191

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 87.1 bits (217), Expect = 3e-19
 Identities = 35/103 (33%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
              D+D VQ+LL      V+  + E G TPL +A     + I +LLL HGAD    R ++
Sbjct: 14  QNEDVDLVQQLLE-GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKN 71

Query: 74  GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           G +    AA++G   +    LS GA     +  G TA   AA 
Sbjct: 72  GATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAV 114

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.4 bits (210), Expect = 2e-18
 Identities = 33/112 (29%), Positives = 45/112 (40%), Gaps = 12/112 (10%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             +  D V+ LL  H     L  ++G TP   AA  G+ ++ +L L  GADVN     +G
Sbjct: 48  QMSREDIVELLLR-HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYG 105

Query: 75  YSALHFAALSGKDDVCACLLSAGAK----------SYATNSVGRTASQMAAF 116
           ++A   AA+ GK      L   GA                  G TA   AA 
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAE 157

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 84.1 bits (209), Expect = 3e-18
 Identities = 23/77 (29%), Positives = 33/77 (42%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
               L  A    +  + Q LL+ GA+VN    E G++ LH A    ++D+   LL  GA 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 100 SYATNSVGRTASQMAAF 116
                  G T   +AA 
Sbjct: 65  PVLRKKNGATPFLLAAI 81

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 82.9 bits (206), Expect = 9e-18
 Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 6/106 (5%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN----KQICQLLLDHGADVNSGR 70
            K  ++ ++ LL E    V+  D  G   L HA    +    + I  LLLDHGADVN  R
Sbjct: 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-R 215

Query: 71  HEHGYSALHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAA 115
            E G + L  A       +   LL     +   T+S G+TA  +A 
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 81.7 bits (203), Expect = 2e-17
 Identities = 30/112 (26%), Positives = 44/112 (39%), Gaps = 11/112 (9%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN------- 67
               +  ++  LS     V+  D +G T    AA  G  +  + L   GA+VN       
Sbjct: 81  IAGSVKLLKLFLS-KGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139

Query: 68  --SGRHEHGYSALHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAAF 116
                 + G +AL  AA  G  +V   LL   GA   A +++GR A   A  
Sbjct: 140 DQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALL 191

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 79.8 bits (198), Expect = 8e-17
 Identities = 23/86 (26%), Positives = 37/86 (43%), Gaps = 2/86 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEH 73
             +D++ +  LL +H   V++  E G TPL  A  K +  + Q LL+    ++N      
Sbjct: 194 DDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND-TDSD 252

Query: 74  GYSALHFAALSGKDDVCACLLSAGAK 99
           G +AL  A       +   L   GA 
Sbjct: 253 GKTALLLAVELKLKKIAELLCKRGAS 278

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 77.9 bits (193), Expect = 3e-16
 Identities = 31/116 (26%), Positives = 46/116 (39%), Gaps = 15/116 (12%)

Query: 15  SKNDIDNVQKLLS---------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GA 64
               +  ++ L           + K   +   + G T L  AA KG+ ++ ++LLD  GA
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGA 173

Query: 65  DVNSGRHEHGYSALHFAALSGKDDVCA----CLLSAGAKSYATNSVGRTASQMAAF 116
           DVN+     G +AL  A LS  D         LL  GA        G+T   +A  
Sbjct: 174 DVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVE 228

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 61.7 bits (151), Expect = 9e-11
 Identities = 16/53 (30%), Positives = 25/53 (47%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
            K  +  VQ+LL +  + ++  D  G T L  A     K+I +LL   GA  +
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 86.8 bits (216), Expect = 1e-18
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 1/101 (0%)

Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
           + K D+  +Q     +   V       +  +  AA    +++ QLL +   +V       
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR-SLNT 322

Query: 74  GYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           G              V    L+  A     +     +S ++
Sbjct: 323 GAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 85.7 bits (213), Expect = 2e-18
 Identities = 22/93 (23%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
            +    KL     D+  M  +  AA KG     + L++ G      ++  G +ALH A  
Sbjct: 4   SMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI-QNRFGCTALHLACK 62

Query: 84  SGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            G  D    L S G      +  G+    +A  
Sbjct: 63  FGCVDTAKYLASVGEVHSLWH--GQKPIHLAVM 93

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 83.4 bits (207), Expect = 1e-17
 Identities = 18/105 (17%), Positives = 39/105 (37%), Gaps = 7/105 (6%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD-----HGADVNSGR 70
              ++ ++ L+          D+   TPL  A    N++   L++D         ++   
Sbjct: 150 PEYLEMIKILVQ-LGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDY-A 207

Query: 71  HEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           ++ G S LH+A L   +DV    +  G      ++       ++ 
Sbjct: 208 NKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 81.8 bits (203), Expect = 5e-17
 Identities = 13/87 (14%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 16  KNDIDNVQKLLSE----HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH 71
             + + +  ++        LR+D  ++ G + L  A     + +    ++ G DVN    
Sbjct: 183 FRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM-ED 241

Query: 72  EHGYSALHFAALSGKDDVCACLLSAGA 98
                 L+ +  +    +   LL    
Sbjct: 242 NEHTVPLYLSVRAAMVLLTKELLQKTD 268

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 78.4 bits (194), Expect = 6e-16
 Identities = 14/113 (12%), Positives = 29/113 (25%), Gaps = 12/113 (10%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG----- 69
              + ++V     E  + V++ D     PL  +       + + LL              
Sbjct: 219 ILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

Query: 70  -------RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
                          +  AA   K +V   L     +   + + G   +    
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRK 331

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.0 bits (180), Expect = 4e-14
 Identities = 12/94 (12%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 30  KLRVDLYDEHGMTPLQHAAYKGN--KQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD 87
           ++   +    G T L      G    ++ ++L+  GA   + + +   + L  A      
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-KDKADETPLMRAMEFRNR 186

Query: 88  DVCACLLSAGAKSY-----ATNSVGRTASQMAAF 116
           +    ++              N  G +    A  
Sbjct: 187 EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAIL 220

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 24/115 (20%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN---------SGRHE-- 72
           K L+           HG  P+  A       +   L++   +               E  
Sbjct: 70  KYLASVG--EVHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVN 127

Query: 73  ---------HGYSALHFAALSGKD--DVCACLLSAGAKSYATNSVGRTASQMAAF 116
                     G +ALH+    G +  ++   L+  GA   A +    T    A  
Sbjct: 128 EIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAME 182

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 79.5 bits (197), Expect = 3e-18
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 1/79 (1%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
                  L  AA  G     ++L+ +GADV + + ++G + LH AA +G  +V   LL A
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEA 79

Query: 97  GAKSYATNSVGRTASQMAA 115
           GA   A +  G+TA  ++ 
Sbjct: 80  GADVXAQDKFGKTAFDISI 98

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 67.2 bits (165), Expect = 6e-14
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 47  AAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSV 106
            +   +      L+  G+ +           L  AA +G+DD    L++ GA   A +  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMG----SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56

Query: 107 GRTASQMAAF 116
           G T   +AA 
Sbjct: 57  GSTPLHLAAR 66

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.7 bits (156), Expect = 1e-12
 Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           ++L  +   V   D++G TPL  AA  G+ ++ +LLL+ GADV + + + G +A   +  
Sbjct: 41  RILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISID 99

Query: 84  SGKDDVCACL 93
           +G +D+   L
Sbjct: 100 NGNEDLAEIL 109

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 78.9 bits (196), Expect = 3e-18
 Identities = 33/78 (42%), Positives = 48/78 (61%), Gaps = 1/78 (1%)

Query: 39  HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
           +G TPL  AA  G+ ++ +LLL+ GADVN+ + ++G + LH AA +G  +V   LL AGA
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGA 59

Query: 99  KSYATNSVGRTASQMAAF 116
              A +  GRT   +AA 
Sbjct: 60  DVNAKDKNGRTPLHLAAR 77

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 77.8 bits (193), Expect = 7e-18
 Identities = 33/75 (44%), Positives = 48/75 (64%), Gaps = 1/75 (1%)

Query: 24 KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
          KLL E    V+  D++G TPL  AA  G+ ++ +LLL+ GADVN+ + ++G + LH AA 
Sbjct: 19 KLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAAR 77

Query: 84 SGKDDVCACLLSAGA 98
          +G  +V   LL AGA
Sbjct: 78 NGHLEVVKLLLEAGA 92

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 82.7 bits (205), Expect = 5e-18
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 7/112 (6%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           + + D VQ+++        L ++ G+T L +A   G+ +I + L+  G +VN+     G+
Sbjct: 47  EGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGW 104

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYA-TNSVGRTASQMAAFVVVAVINNYI 126
           + LH AA      VC  L+ +GA  +A T S  +TA+         +   Y 
Sbjct: 105 TPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE----EMEEGYT 152

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 81.5 bits (202), Expect = 1e-17
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 2/103 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH--E 72
                  + K L +  + V+  D  G TPL  AA   N Q+C+ L++ GA V +  +   
Sbjct: 78  VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM 137

Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
              +        G       L     K    N     A     
Sbjct: 138 QTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYE 180

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 77.7 bits (192), Expect = 2e-16
 Identities = 14/80 (17%), Positives = 25/80 (31%), Gaps = 2/80 (2%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
           +  G   L        ++     + HG  V         + L  ++L G+ D+   ++  
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN--PLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 97  GAKSYATNSVGRTASQMAAF 116
                  N  G TA   A  
Sbjct: 60  VDDPSLPNDEGITALHNAVC 79

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 8/74 (10%), Positives = 25/74 (33%), Gaps = 4/74 (5%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH- 73
            +       + L   + ++ + ++  +  L     + +    +L +  G  +     E  
Sbjct: 147 MEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD---ELPMKEGDCMTIIHREDE 203

Query: 74  GYSALHFAALSGKD 87
                 +A L+ K+
Sbjct: 204 DEIEWWWARLNDKE 217

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 76.6 bits (188), Expect = 1e-17
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 413 TSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS 472
           +S  +G    A +   C  C  E A+K+C++C+   YC RECQ  HW  H K C  +   
Sbjct: 2   SSGSSGLEAVAPERPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQG 60

Query: 473 AQPDDGKSA 481
            +   G S+
Sbjct: 61  DRAKSGPSS 69

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Length = 70

 Score = 74.7 bits (183), Expect = 4e-17
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 313 TSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS 372
           +S  +G    A +   C  C  E A+K+C++C+   YC RECQ  HW  H K C  +   
Sbjct: 2   SSGSSGLEAVAPERPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQG 60

Query: 373 AQPDDG 378
            +   G
Sbjct: 61  DRAKSG 66

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 81.1 bits (201), Expect = 1e-17
 Identities = 25/118 (21%), Positives = 42/118 (35%), Gaps = 17/118 (14%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH---- 71
           +ND+  + KLL      V      G T L  AA   N +   +L++   ++         
Sbjct: 13  ENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSEL 72

Query: 72  EHGYSALHFAALSGKDDVCACLLSAGA-------------KSYATNSVGRTASQMAAF 116
             G +ALH A ++   ++   LL+ GA             + +     G      AA 
Sbjct: 73  YEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC 130

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 74.2 bits (183), Expect = 3e-15
 Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 23/125 (18%)

Query: 14  ISKNDIDNVQKLLS------------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD 61
           +   +++ V+ LL+                R      +G  PL  AA  G+++I +LL++
Sbjct: 83  VINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE 142

Query: 62  HGADVNSGRHEHGYSALHFAALSGKDDVCA----CLLSAGAK------SYATNSVGRTAS 111
           HGAD+ + +   G + LH   L             LLS              N+ G T  
Sbjct: 143 HGADIRA-QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPF 201

Query: 112 QMAAF 116
           ++A  
Sbjct: 202 KLAGV 206

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 68.4 bits (168), Expect = 3e-13
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 7/83 (8%)

Query: 40  GMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGA 98
             +PL  AA + + + + +LL   G +V+  R   G +ALH AAL    +    L+ A  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAP 61

Query: 99  KSY-----ATNSVGRTASQMAAF 116
           +       +    G+TA  +A  
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVI 84

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 67.6 bits (166), Expect = 5e-13
 Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 10/92 (10%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNK----QICQLLLDHGADVNSGRH 71
               + V+ L+  H   +   D  G T L     + NK    Q+  LLL +    +    
Sbjct: 131 VGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL 189

Query: 72  E-----HGYSALHFAALSGKDDVCACLLSAGA 98
           E      G +    A + G   +   L+    
Sbjct: 190 ELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 9/109 (8%)

Query: 15  SKNDIDNVQKLLS-------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADV 66
            ++ + + + L+        +   R D     G T L +AA   N  I + L+   G++ 
Sbjct: 247 GRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306

Query: 67  NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           +  + E G + +  AA  G+ +V   L+  GA   A ++   TA Q+A 
Sbjct: 307 DK-QDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 354

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 82.7 bits (205), Expect = 2e-17
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
            +++  V+ L+ E     D  DE G TP+  AA +G  ++   L+  GA V +      +
Sbjct: 289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA-VDATDH 347

Query: 76  SALHFAALSGKDDVCACLLSAGAK 99
           +A   A  +   ++         +
Sbjct: 348 TARQLAQANNHHNIVDIFDRCRPE 371

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 78.8 bits (195), Expect = 5e-16
 Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 4/101 (3%)

Query: 19  IDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSAL 78
           I +  K        V+  D    TPL  A     +++   L+  GAD     ++   SAL
Sbjct: 145 IVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSAL 203

Query: 79  HFAALSGKDDVCACLLS---AGAKSYATNSVGRTASQMAAF 116
           H AA +    +   +L+           +  G TA  + A 
Sbjct: 204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 76.5 bits (189), Expect = 2e-15
 Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 13/115 (11%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLY--DEHGMTPLQHAAYKGNK---QICQLLLDHGADVNSG 69
           +  D   +  +L+  KL+ D+   D +GMT L   A+   +      +LL++ GA V+  
Sbjct: 208 ANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

Query: 70  RH-------EHGYSALHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAAF 116
                      G +ALH+AA      +   L+   G+     +  G+T   +AA 
Sbjct: 268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.4 bits (186), Expect = 7e-15
 Identities = 17/110 (15%), Positives = 32/110 (29%), Gaps = 11/110 (10%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             N  D +      +       +      L H    G+  I + +     ++   R  H 
Sbjct: 69  YGNGNDFLGDFNHTNLQIPTEPEPESPIKL-HTEAAGSYAITEPITRESVNIIDPR--HN 125

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSY--------ATNSVGRTASQMAAF 116
            + LH+ A +   +    L+   AK          A +    T   +A  
Sbjct: 126 RTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVL 175

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 75.0 bits (185), Expect = 9e-15
 Identities = 26/111 (23%), Positives = 42/111 (37%), Gaps = 13/111 (11%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLY-DEHGMTPLQHAAYKGNKQICQLLLDH--------GAD 65
           +       + +  E    V++    H  T L   A   + +  + L+ H        GAD
Sbjct: 102 AAGSYAITEPITRES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 66  VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
           VN+       + L  A L+ +  + A L+ AGA     N   R+A   AA 
Sbjct: 159 VNA-MDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAA 208

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.0 bits (172), Expect = 3e-13
 Identities = 11/88 (12%), Positives = 20/88 (22%), Gaps = 3/88 (3%)

Query: 29  HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD 88
            K + +    + + P       GN  +      +               LH  A +G   
Sbjct: 50  IKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE-PEPESPIKLHTEA-AGSYA 107

Query: 89  VCACLLSAGAKSYATNSVGRTASQMAAF 116
           +   +              RT     A 
Sbjct: 108 ITEPITRESVNIIDPRH-NRTVLHWIAS 134

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.3 bits (121), Expect = 8e-07
 Identities = 9/52 (17%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
            +  I+ V  L+      V+  D    T  Q A    +  I  +      + 
Sbjct: 322 QEGRIEVVMYLIQ-QGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 9/76 (11%), Positives = 16/76 (21%), Gaps = 10/76 (13%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
               L  A+Y G  +  +  L H          +          +G D +     +    
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQH----------YSLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 100 SYATNSVGRTASQMAA 115
                          A
Sbjct: 87  PTEPEPESPIKLHTEA 102

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 14/105 (13%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNK------QICQLLLDHGADVNSGRHEHGYSA 77
             L      +    + G T        G        ++C++ L+ GAD+ +  ++     
Sbjct: 59  MFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-LYKPYKIV 117

Query: 78  LHFAALSGKDDVCAC-------LLSAGAKSYATNSVGRTASQMAA 115
           +     +   D              +G +    +  G TA +   
Sbjct: 118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVK 162

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 19/110 (17%), Positives = 35/110 (31%), Gaps = 9/110 (8%)

Query: 15  SKNDIDNVQKLLSEH--KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE 72
                ++  +L  +        L        L++   +   +I   L++ GAD+ S R +
Sbjct: 15  MLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTK 73

Query: 73  HGYSALHFAALSGKDDV------CACLLSAGAKSYATNSVGRTASQMAAF 116
            G +        G +D+      C   L  GA   A     +       F
Sbjct: 74  EGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIF 123

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNK------QICQLLLDH-GADVNSGRHEHGYS 76
           K+  E    +    +     +    +           + +L+    G  +   + + G +
Sbjct: 98  KIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI-KDKWGLT 156

Query: 77  ALHFAALSGKDDVCACLLSAGAK 99
           AL F     K      +     K
Sbjct: 157 ALEFVKRCQKPIALKMMEDYIKK 179

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 12/78 (15%), Positives = 22/78 (28%), Gaps = 2/78 (2%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVN--SGRHEHGYSALHFAALSGKDDVCACLLSAG 97
               +  AA  G  +    L + G +      +    Y  L       +  +   L++ G
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKG 65

Query: 98  AKSYATNSVGRTASQMAA 115
           A   +    G T      
Sbjct: 66  ADIKSRTKEGTTLFFPLF 83

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 8/46 (17%), Positives = 21/46 (45%)

Query: 22  VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
            + + S+  L++ + D+ G+T L+           +++ D+    N
Sbjct: 136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 71.2 bits (174), Expect = 7e-16
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 323 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQ 374
            D +  C  CG + A++ C+ C T RYC   CQ   W  H   C ++  + Q
Sbjct: 14  GDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 64

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Length = 64

 Score = 71.2 bits (174), Expect = 7e-16
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)

Query: 423 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQ 474
            D +  C  CG + A++ C+ C T RYC   CQ   W  H   C ++  + Q
Sbjct: 14  GDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 64

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 70.4 bits (172), Expect = 1e-15
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 314 SAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECAR 368
           S  +G     D +  C  CG + A++ C+ C T RYC   CQ   W  H   C+ 
Sbjct: 3   SGSSGINQQEDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSG 56

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 60

 Score = 70.4 bits (172), Expect = 1e-15
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 414 SAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECAR 468
           S  +G     D +  C  CG + A++ C+ C T RYC   CQ   W  H   C+ 
Sbjct: 3   SGSSGINQQEDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSG 56

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 323 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQ 374
           +D +  C  CG + A++ C+ C T RYC   CQ   W  H   C ++  + Q
Sbjct: 10  SDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 60

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Length = 60

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)

Query: 423 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPSAQ 474
           +D +  C  CG + A++ C+ C T RYC   CQ   W  H   C ++  + Q
Sbjct: 10  SDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 60

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 74.4 bits (183), Expect = 4e-15
 Identities = 30/174 (17%), Positives = 54/174 (31%), Gaps = 32/174 (18%)

Query: 14  ISKNDIDNVQKLLSEHKLRVDLY----------DEHGMTPLQHAAYKGNKQICQLLLDHG 63
           +S    D +  LL   +   ++              G T L  A  +  K   +LL++ G
Sbjct: 57  LSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG 116

Query: 64  ADVNS-------------GRHEHGYSALHFAALSGKDDVCACLLSAGAKS---YATNSVG 107
           ADV++             G    G   L  AA + +  +   L   G K       +S G
Sbjct: 117 ADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRG 176

Query: 108 RTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAE------PLH 155
            T       +      N    +++   ++ +  +  P  +           PL 
Sbjct: 177 NTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLM 230

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 20/102 (19%), Positives = 30/102 (29%), Gaps = 17/102 (16%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLY--DEHGMTPLQHAAYKGNK---------QICQLLLDHG 63
             N    V  L      + DL   D  G T L       +          ++  LLL   
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 64  ADVNSGRH------EHGYSALHFAALSGKDDVCACLLSAGAK 99
           A +    +        G S L  AA +GK  +   ++     
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIA 250

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 56.7 bits (137), Expect = 4e-09
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 24/103 (23%)

Query: 35  LYDEHGMTPLQHAAYKGN----KQICQLLLDHGADVN---SGRHEHGYSALHFAAL---S 84
           +++      L     +G+    + +   LL H   +          G + L  A L   +
Sbjct: 3   VFNR---PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA 59

Query: 85  GKDDVCACLLSAGAKSYATNSV-----------GRTASQMAAF 116
           G++D    LL    K+                 G+TA  +A  
Sbjct: 60  GRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIE 102

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 9   EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS 68
           +++D +             E      L +  G++PL  AA  G   I Q ++       +
Sbjct: 199 KMYDLLLIKCAKLFPDTNLE-----ALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAA 253

Query: 69  GRHEHGY 75
             H H +
Sbjct: 254 AHHHHHH 260

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 68.3 bits (167), Expect = 5e-15
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 323 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSG 370
                 CV CG E A  +C  C    YC   CQR  W  H+  C +S 
Sbjct: 6   ERKEQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA 52

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Length = 52

 Score = 68.3 bits (167), Expect = 5e-15
 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 423 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSG 470
                 CV CG E A  +C  C    YC   CQR  W  H+  C +S 
Sbjct: 6   ERKEQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICGQSA 52

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.8 bits (186), Expect = 6e-15
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 4/104 (3%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG-RHEHG 74
            + +D +  LL+  ++ V +         + AA  G+  +   L +              
Sbjct: 105 SSALDTLCLLLTSDEI-VKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN 163

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATN--SVGRTASQMAAF 116
           Y A   AA +G   V   L             +    A + AA 
Sbjct: 164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAV 207

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.7 bits (134), Expect = 2e-08
 Identities = 22/124 (17%), Positives = 35/124 (28%), Gaps = 18/124 (14%)

Query: 10  IFDFISK-NDIDNVQKLLSEHKLRVDLYDEHGM-----------TPLQHAAYKGNK---Q 54
           I  F+    +++ V++LL  +    +   +                   AA  G      
Sbjct: 50  IHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALD 109

Query: 55  ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATN--SVGRTASQ 112
              LLL     V        Y A   AA +G   V   L             +    A +
Sbjct: 110 TLCLLLTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFR 168

Query: 113 MAAF 116
           +AA 
Sbjct: 169 LAAE 172

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 48.0 bits (114), Expect = 4e-06
 Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 8/84 (9%)

Query: 19  IDNVQKLLSEHKLR----VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           +D+++ LLS   ++               L+ A   GN+  C LLL   + +   +  + 
Sbjct: 294 LDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK-ANN 352

Query: 75  YSALHFAALSGKDDVCACLLSAGA 98
           Y   +     G+ D+ A  L    
Sbjct: 353 Y---YINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 10/93 (10%), Positives = 24/93 (25%), Gaps = 10/93 (10%)

Query: 22  VQKLLSEHKLRVDL-YDEHGMTPLQHAAY-KGNKQICQLLLDHGADVNSGRHEHGYSALH 79
           + +L                    + AA  +G+  +   LLD    +          A  
Sbjct: 179 LNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA--------YAEI 230

Query: 80  FAALSGKDDVCACLLSAGAKSYATNSVGRTASQ 112
                G+  V   +     +    +   + ++ 
Sbjct: 231 HEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNP 263

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 71.0 bits (174), Expect = 5e-14
 Identities = 23/132 (17%), Positives = 37/132 (28%), Gaps = 30/132 (22%)

Query: 14  ISKNDIDNVQKLLS------------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD 61
           I K  +  V+ L+               +         G  PL  AA      +   LL+
Sbjct: 98  IEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLE 157

Query: 62  HG---ADVNS---------------GRHEHGYSALHFAALSGKDDVCACLLSAGAKSYAT 103
           +    A + +                 +    SAL      G   + A L         +
Sbjct: 158 NPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS 217

Query: 104 NSVGRTASQMAA 115
           N  G T  ++AA
Sbjct: 218 NHQGLTPLKLAA 229

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.9 bits (166), Expect = 6e-13
 Identities = 27/121 (22%), Positives = 41/121 (33%), Gaps = 25/121 (20%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLY----------DEHGMTPLQHAAYKGNKQICQLLLDHGA 64
                  +  LL   K   +               G + L  A  K + Q  +LL+++GA
Sbjct: 55  QDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114

Query: 65  DVN------------SGRHEHGYSALHFAALSGKDDVCACLLSAGAKS---YATNSVGRT 109
           DV+                  G   L  AA + + DV   LL    +     AT+S+G T
Sbjct: 115 DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNT 174

Query: 110 A 110
            
Sbjct: 175 V 175

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 67.9 bits (166), Expect = 7e-13
 Identities = 16/76 (21%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 29  HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD 88
           H L +   +    + L    Y G  Q+   L           H+ G + L  AA  GK +
Sbjct: 177 HALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQ-GLTPLKLAAKEGKIE 235

Query: 89  VCACLLSAGAKSYATN 104
           +   +L       A +
Sbjct: 236 IFRHILQREFSGAAAH 251

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 59.8 bits (145), Expect = 4e-10
 Identities = 21/111 (18%), Positives = 31/111 (27%), Gaps = 20/111 (18%)

Query: 8   NEIFDFISKNDIDNVQKLLSEHKLRVDLY-------DEHGMTPLQHAA---YKGNKQICQ 57
           + +F  +S+   + +  LL   +                G T L  A      G      
Sbjct: 4   DRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIM 63

Query: 58  LLLDHGADVNSG----------RHEHGYSALHFAALSGKDDVCACLLSAGA 98
            LL    D  +               G+SALH A           L+  GA
Sbjct: 64  PLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA 114

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 12/61 (19%), Positives = 26/61 (42%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             + +  +   L       ++ +  G+TPL+ AA +G  +I + +L       +  H H 
Sbjct: 196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255

Query: 75  Y 75
           +
Sbjct: 256 H 256

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 26/127 (20%), Positives = 40/127 (31%), Gaps = 27/127 (21%)

Query: 16  KNDIDNVQKLLSEHKLRVDLY-----------DEHGMTPLQHAAYKGNKQICQLLLDHGA 64
            N  ++   LL +   + D                G T L  A  + N  +  LL+++GA
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 65  DVN-------------SGRHEHGYSALHFAALSGKDDVCACLLSAGAKS---YATNSVGR 108
           DV                    G   L  AA + +  +   LL    +     A +SVG 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN 185

Query: 109 TASQMAA 115
           T      
Sbjct: 186 TVLHALV 192

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 65.6 bits (160), Expect = 5e-12
 Identities = 27/135 (20%), Positives = 40/135 (29%), Gaps = 33/135 (24%)

Query: 14  ISKNDIDNVQKLLS-------------EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
           I + ++  V  L+                K +       G  PL  AA      I + LL
Sbjct: 109 IERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLL 168

Query: 61  DHG---ADVNSGRHEHGYSALHFAALSGKDDV----------------CACLLSAGAKSY 101
            +    AD+++ R   G + LH       + V                 A L        
Sbjct: 169 QNSWQPADISA-RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 102 ATNSVGRTASQMAAF 116
            TN  G T   +AA 
Sbjct: 228 ITNRKGLTPLALAAS 242

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 24/117 (20%)

Query: 16  KNDIDNVQKLLSEHKLRVDL--YDEHGMTPLQHAAYKGNKQI---------CQLLLDHGA 64
            N +  V+ LL       D+   D  G T L       +  +            +L  GA
Sbjct: 158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGA 217

Query: 65  DVNSGRH------EHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            ++            G + L  AA SGK  V A +L                   AA
Sbjct: 218 KLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRHAAA 267

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 20/101 (19%), Positives = 31/101 (30%), Gaps = 21/101 (20%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLD-------HGADVNSGRHEHGYSALHFAALSGKD-- 87
             +    +  A  + N Q  + LL           D      E G + L  A L+  +  
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 88  -DVCACLLSAGAKSYAT-----------NSVGRTASQMAAF 116
            D  A LL    K+ +               G+TA  +A  
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIE 110

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 56.3 bits (136), Expect = 5e-09
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 8/71 (11%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             N+I  +   L       ++ +  G+TPL  AA  G   +   +L              
Sbjct: 208 MYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH--------E 259

Query: 75  YSALHFAALSG 85
               H AA   
Sbjct: 260 PECRHAAAHHH 270

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 69.7 bits (170), Expect = 4e-13
 Identities = 18/114 (15%), Positives = 42/114 (36%), Gaps = 5/114 (4%)

Query: 17  NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHEHGY 75
            +I  +   L+      +          QH ++    +++     +   ++N    EHG 
Sbjct: 73  PEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGN 132

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKS 129
           + LH+       ++   L+  G+     +++G +    A   V    NNY + +
Sbjct: 133 TPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSV----NNYDSGT 182

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 67.0 bits (163), Expect = 3e-12
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
            K+ I     L       ++  D +G T L  AA  GN  I   LLD+GAD     ++ G
Sbjct: 258 RKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI-ANKSG 316

Query: 75  YSALHFAA 82
              + F A
Sbjct: 317 LRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 19/106 (17%), Positives = 35/106 (33%), Gaps = 5/106 (4%)

Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH----GADVNSG 69
            +K  +D +   + + + R      +      +      K      LD        +N+ 
Sbjct: 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA- 278

Query: 70  RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           +  +G + L+ AA  G   +   LL  GA  +  N  G       A
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.0 bits (158), Expect = 9e-12
 Identities = 25/122 (20%), Positives = 44/122 (36%), Gaps = 9/122 (7%)

Query: 1   MSIPMEGNEIFDFISKNDIDNVQKLLSE-----HKLRVDLYDEHGMTPLQHAAYKGNK-- 53
                E   ++  I   D+ +V +  +        L            L  A    N+  
Sbjct: 146 RRCTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQAS 205

Query: 54  -QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQ 112
             +   ++ +G  +++ +   G +ALH+AAL  + D    LL   A     N  G TA  
Sbjct: 206 LPLVDFIIQNGGHLDA-KAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264

Query: 113 MA 114
           +A
Sbjct: 265 IA 266

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 50.8 bits (121), Expect = 5e-07
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)

Query: 25  LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
            + ++   +D     G T L +AA        +LLL   A V +  +E G +AL  A   
Sbjct: 211 FIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGT-VNEAGETALDIARKK 269

Query: 85  GKDDVCACLL 94
              + C  LL
Sbjct: 270 HHKE-CEELL 278

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.5 bits (154), Expect = 3e-11
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 4/82 (4%)

Query: 37  DEHGMTPLQHAAYKGNK---QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
            E   T L  A    ++    I   L+ +  +++  +   G +ALH+  L+   +    L
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTALHYCCLTDNAECLKLL 224

Query: 94  LSAGAKSYATNSVGRTASQMAA 115
           L   A     N  G T   +A 
Sbjct: 225 LRGKASIEIANESGETPLDIAK 246

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 56.9 bits (137), Expect = 4e-09
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 2/70 (2%)

Query: 25  LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
            L ++   +D     G T L +     N +  +LLL   A +    +E G + L  A   
Sbjct: 190 FLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEI-ANESGETPLDIAKRL 248

Query: 85  GKDDVCACLL 94
             +  C  LL
Sbjct: 249 KHEH-CEELL 257

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 63.4 bits (154), Expect = 9e-11
 Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 9/120 (7%)

Query: 3   IPMEGNEIFDFISKNDIDNVQKLLSE-----HKLRVDLYDEHGMTPLQHA---AYKGNKQ 54
              E   ++  I   D+ +V +  +        L            L  A   A + +  
Sbjct: 129 CTPEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLP 188

Query: 55  ICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           +   ++ +G  +++ +   G +ALH+AAL  + D    LL   A     N  G TA  +A
Sbjct: 189 LVDFIIQNGGHLDA-KAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 247

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.5 bits (151), Expect = 9e-11
 Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 1/78 (1%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
            +   TPL  A    +   C+ LL +GA+VN      G   LH A + G   +    L  
Sbjct: 232 GQDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHATILGHTGLACLFLKR 290

Query: 97  GAKSYATNSVGRTASQMA 114
           GA   A +S GR    +A
Sbjct: 291 GADLGARDSEGRDPLTIA 308

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 50.9 bits (121), Expect = 5e-07
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 25  LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS 84
            L ++   V+  D  G  PL HA   G+  +  L L  GAD+ + R   G   L  A  +
Sbjct: 253 FLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGA-RDSEGRDPLTIAMET 311

Query: 85  GKDDVCACLLSAGAKSYAT----------NSVGRTASQMAA 115
              D+   L  A  +                + R  S MA+
Sbjct: 312 ANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMAS 352

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 44.9 bits (105), Expect = 5e-05
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 329 CVTCGEEN-ATKKCAKCKTTRYCDRECQRLHWFIHKKECA 367
           C TC +      +C +CK   YCDR CQ+  W  HK ECA
Sbjct: 52  CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECA 91

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490

 Score = 44.9 bits (105), Expect = 5e-05
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 429 CVTCGEEN-ATKKCAKCKTTRYCDRECQRLHWFIHKKECA 467
           C TC +      +C +CK   YCDR CQ+  W  HK ECA
Sbjct: 52  CHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECA 91

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 46/340 (13%), Positives = 90/340 (26%), Gaps = 113/340 (33%)

Query: 128 KSEVDYYIV---PRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVR 184
               D   V   P+ + +  ++D I+               V   L L  +L+       
Sbjct: 30  VDNFDCKDVQDMPKSILSKEEIDHIIMSK----------DAVSGTLRLFWTLL------- 72

Query: 185 KVVSLLSEKQMKAGPETNEIIQGDKPCDLVELFVRKIHRPIHG---EKYVAMFIRDCVRE 241
                                   K  ++V+ FV ++ R  +            +  +  
Sbjct: 73  -----------------------SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 242 FPYREQGDKSCDLVELFV-RKIHRPIHGEKYVAMFIRDCVREFPYRECMIFKQMVSSLAR 300
             Y EQ D+  +  ++F    + R    + Y+   +R  + E    + ++   +      
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRL---QPYLK--LRQALLELRPAKNVLIDGV------ 158

Query: 301 SDPTPGFALSVLT-SAINGHRGFADDTTPCVTCGEENATK--KCAKCKTTRYCDRECQRL 357
                G   + +       ++         V C  +          C +        Q+L
Sbjct: 159 ----LGSGKTWVALDVCLSYK---------VQCKMDFKIFWLNLKNCNSPETVLEMLQKL 205

Query: 358 HWFIHKKECARSGPSAQPDDGKLGNAVNGTAGEEKPMVSSLARSDPTPGFALSVLTSAIN 417
            + I     +RS  S+                  +  +  L +S P     L VL     
Sbjct: 206 LYQIDPNWTSRSDHSSNIKL---------RIHSIQAELRRLLKSKPYEN-CLLVL----- 250

Query: 418 GHRGFADDTTPCVTCGEENATKKCAK-----CK---TTRY 449
                  +    V         K        CK   TTR+
Sbjct: 251 ------LN----V------QNAKAWNAFNLSCKILLTTRF 274

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 329 CVTCGEENAT-KKCAKCKTTRYCDRECQRLHWFIHKKEC 366
           C  C        KC +CK   YCD ECQ+  W +HK EC
Sbjct: 52  CECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC 90

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 429 CVTCGEENAT-KKCAKCKTTRYCDRECQRLHWFIHKKEC 466
           C  C        KC +CK   YCD ECQ+  W +HK EC
Sbjct: 52  CECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLEC 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	534
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.95
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.95
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.94
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
2rfa_A	232	Transient receptor potential cation channel subfa	99.94
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.93
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.93
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.93
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.92
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.92
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.92
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.92
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.92
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.92
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.92
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.91
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.91
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.9
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.9
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.9
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.9
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.9
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.89
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.89
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.89
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.89
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.88
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.88
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.88
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.88
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.87
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.87
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.86
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.86
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.86
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.85
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.83
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.82
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.79
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.77
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.77
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.66
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	99.29
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	99.28
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	99.19
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	99.18
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	99.06
2d8q_A	70	BLU protein, zinc finger MYND domain containing pr	98.95
2od1_A	60	Protein CBFA2T1; zinc finger, cross-braced topolog	98.86
2dj8_A	60	Protein CBFA2T1; zinc finger MYND domain, protein	98.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.81
2odd_A	64	Protein CBFA2T1; MYND zinc finger, cross-braced to	98.8
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.79
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.77
2jw6_A	52	Deformed epidermal autoregulatory factor 1 homolo;	98.7
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.55
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.47
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.33
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	96.83
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	93.97
2yqq_A	56	Zinc finger HIT domain-containing protein 3; struc	92.05
1x4s_A	59	Protein FON, zinc finger HIT domain containing pro	85.75

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=6.2e-32  Score=243.10  Aligned_cols=156  Identities=29%  Similarity=0.371  Sum_probs=147.9

Q ss_pred             CCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      .-|+.|+.||..|+.+.|+.||.. |+++|.+|..|+||||+|+..++.+++++|++.|++++. .|..|+||||+|+..
T Consensus         3 dlg~~L~~Aa~~G~~~~v~~Ll~~-Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~-~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            3 ELGKRLIEAAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHC-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh-hccCCCCHHHHHHHc
Confidence            346789999999999999887765 999999999999999999999999999999999999999 899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      |+.++|++||++|+++|.+|..|+||||+|+..|+.+++++|++.|++++.          .|..|.||||+|+..|+.+
T Consensus        81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~----------~d~~G~TpL~~A~~~g~~~  150 (169)
T 4gpm_A           81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNT----------SDSDGRTPLDLAREHGNEE  150 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----------cCCCCCCHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999999999999843          4778999999999999999


Q ss_pred             HHHHHHhh
Q psy2859         165 PVRVALNL  172 (534)
Q Consensus       165 ~v~~Ll~~  172 (534)
                      ++++|+++
T Consensus       151 iv~~Ll~~  158 (169)
T 4gpm_A          151 VVKLLEKQ  158 (169)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHHC
Confidence            99999987

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.96  E-value=5.1e-28  Score=229.21  Aligned_cols=180  Identities=22%  Similarity=0.244  Sum_probs=160.4

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC-----CCCCCCCCchHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV-----NSGRHEHGYSALHF   80 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~v-----n~~~~~~G~TpLh~   80 (534)
                      +.++||.||..|+.+.++.||...|+++|.+|..|+||||+|+..|+.++|++|+++|+++     +. .+..|.||||+
T Consensus         3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~~g~t~L~~   81 (232)
T 2rfa_A            3 WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS-ELYEGQTALHI   81 (232)
T ss_dssp             TTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCS-TTTTTCCHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccc-cCCCCcCHHHH
Confidence            4578889999999999999988889999999999999999999999999999999999987     55 67899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCC-------------CCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCC
Q psy2859          81 AALSGKDDVCACLLSAGAKSYATNS-------------VGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLD  147 (534)
Q Consensus        81 A~~~g~~~iv~~Ll~~ga~~~~~~~-------------~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~  147 (534)
                      |+..|+.+++++|+++|++++..+.             .|.||||+|+..|+.+++++|++.|++++.          .|
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~d  151 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA----------QD  151 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC----------CC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------CC
Confidence            9999999999999999999988765             799999999999999999999999999843          47


Q ss_pred             CCCCchHHHHHHhcCchHH----HHHHhh------------------CCcccccccchHHHHHHHHHhhhh
Q psy2859         148 PILAEPLHTFIMQVNIHPV----RVALNL------------------LPSLISHLPSVRKVVSLLSEKQMK  196 (534)
Q Consensus       148 ~~g~t~L~~A~~~~~~~~v----~~Ll~~------------------~p~~~~~~~~~~~~~~~l~~~~~~  196 (534)
                      ..|.||||+|+..++.+++    ++|+++                  +|++++...+..++++.|.+++..
T Consensus       152 ~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~  222 (232)
T 2rfa_A          152 SLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH  222 (232)
T ss_dssp             TTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence            7899999999999999988    888764                  456667777778888888776543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.1e-27  Score=214.99  Aligned_cols=156  Identities=19%  Similarity=0.169  Sum_probs=147.3

Q ss_pred             CCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      .+.++++.||..|+.+.+..+|.. |.++|..|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHc
Confidence            356789999999999999888877 899999999999999999999999999999999999999 899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      |+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++.          .+..|.|||++|+..|+.+
T Consensus        80 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~l~~A~~~~~~~  149 (167)
T 3v31_A           80 GYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI----------ETDSGYNSMDLAVALGYRS  149 (167)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHHTCHH
T ss_pred             CCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHcCcHH
Confidence            999999999999999999999999999999999999999999999999743          4778999999999999999


Q ss_pred             HHHHHHhh
Q psy2859         165 PVRVALNL  172 (534)
Q Consensus       165 ~v~~Ll~~  172 (534)
                      ++++|+++
T Consensus       150 ~~~~L~~~  157 (167)
T 3v31_A          150 VQQVIESH  157 (167)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999987

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=1.2e-27  Score=215.31  Aligned_cols=155  Identities=28%  Similarity=0.360  Sum_probs=144.6

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      ..++++.||..|+.+.|+.||.. |+++|.+|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   91 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMAN-GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFG   91 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             ccchHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcC
Confidence            35678888999998888777665 999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++..|..|.||||+|+..++.+++++|++.|++++.          .+..|.|||++|+..|+.++
T Consensus        92 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~l~~A~~~~~~~~  161 (169)
T 2y1l_E           92 HLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA----------QDKFGKTAFDISIDNGNEDL  161 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHhCCHHH
Confidence            99999999999999999999999999999999999999999999999743          46789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|+++
T Consensus       162 ~~~L~~~  168 (169)
T 2y1l_E          162 AEILQKL  168 (169)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHc
Confidence            9999864

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=6.2e-28  Score=217.67  Aligned_cols=156  Identities=21%  Similarity=0.172  Sum_probs=146.0

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.||..|+.+.++.+|...+..++..|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHCC
Confidence            457899999999999999999885555899999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..|+.++
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t~l~~A~~~~~~~~  150 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT----------EADSGYTPMDLAVALGYRKV  150 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----------cCCCCCCHHHHHHHhCcHHH
Confidence            99999999999999999999999999999999999999999999999743          46789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|+++
T Consensus       151 ~~~L~~~  157 (172)
T 3v30_A          151 QQVIENH  157 (172)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999987

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=8.6e-28  Score=222.27  Aligned_cols=178  Identities=19%  Similarity=0.207  Sum_probs=162.0

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL   83 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~   83 (534)
                      +.+.++|+.||..|+.+.+..+|...+.++|..|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~   81 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSISDSPYLYAGA   81 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHH
Confidence            45678999999999999999999998889999999999999999999999999999999999999 89999999999999


Q ss_pred             cCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcC-CceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859          84 SGKDDVCACLL-SAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSE-VDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus        84 ~g~~~iv~~Ll-~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      .|+.+++++|+ ..+++++..+..|.||||+|+..++.+++++|++.| ++++          ..+..|.||||+|+..+
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~~g~t~L~~A~~~~  151 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID----------FQNDFGYTALIEAVGLR  151 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT----------CCCTTSCCHHHHHHHSS
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC----------CCCCCCCCHHHHHHHhc
Confidence            99999999999 567899999999999999999999999999999998 7764          34778999999999999


Q ss_pred             C-----chHHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         162 N-----IHPVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       162 ~-----~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      +     .+++++|++.            +|++++...+..++++.|.+
T Consensus       152 ~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  199 (201)
T 3hra_A          152 EGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ  199 (201)
T ss_dssp             CCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             cchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHh
Confidence            8     8999999986            56777777777778877753

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=9.5e-28  Score=212.74  Aligned_cols=154  Identities=23%  Similarity=0.278  Sum_probs=145.3

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .+++++.||..|+.+.++.+|...+.+++..|..|+||||+ +..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV-QDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcC
Confidence            46889999999999999999998778999999999999999 999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. ++++          ..+..|.||||+|+..|+.++
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~----------~~~~~g~t~l~~A~~~~~~~~  148 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH----------RRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT----------CCCTTSCCHHHHHHHSCCHHH
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC----------CcCCCCCCHHHHHHHcCcHHH
Confidence            99999999999999999999999999999999999999999998 7763          347789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|+++
T Consensus       149 v~~Ll~~  155 (156)
T 1bd8_A          149 VDILQGH  155 (156)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9999874

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.95  E-value=3.7e-28  Score=235.78  Aligned_cols=165  Identities=20%  Similarity=0.228  Sum_probs=135.1

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++++.|+..++...+..+|.+.|+++|..|..|+||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..++
T Consensus        53 ~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~  131 (269)
T 4b93_B           53 CHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGH  131 (269)
T ss_dssp             ----------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-cCCCCCCccccccccCh
Confidence            35677888888888888888888999999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      .+++++|++.|+++|.+|..|+||||+|+..|+.+++++|++.|++++.          .+..|.||||+|+..|+.++|
T Consensus       132 ~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~----------~~~~g~t~Lh~A~~~g~~~~v  201 (269)
T 4b93_B          132 FQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINA----------SNNKGNTALHEAVIEKHVFVV  201 (269)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTC----------BCTTSCBHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCc----------cccCCCcHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999999854          477899999999999999999


Q ss_pred             HHHHhh------------CCcccccccc
Q psy2859         167 RVALNL------------LPSLISHLPS  182 (534)
Q Consensus       167 ~~Ll~~------------~p~~~~~~~~  182 (534)
                      ++|+++            +|++++...+
T Consensus       202 ~~Ll~~Gad~~~~d~~G~TpL~~A~~~~  229 (269)
T 4b93_B          202 ELLLLHGASVQVLNKRQRTAVDCAEQNS  229 (269)
T ss_dssp             HHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence            999987            6777776544

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=9.4e-28  Score=214.09  Aligned_cols=156  Identities=21%  Similarity=0.211  Sum_probs=144.5

Q ss_pred             CCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      ..+++|+.|+..|+.+.++.||. .|+++|..|..|+||||+|+. |+.+++++|+++|++++. .+..|.||||+|+..
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~   80 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQ-NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-KDRTGFAVIHDAARA   80 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTT-SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHh-CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHc
Confidence            35688999999999998888875 599999999999999999999 999999999999999999 899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      |+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++..         ...+..|.||||+|+..|+.+
T Consensus        81 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------~~~~~~g~t~l~~A~~~~~~~  151 (162)
T 1ihb_A           81 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV---------GHRNHKGDTACDLARLYGRNE  151 (162)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT---------TCCCTTSCCHHHHHHHTTCHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCC---------CCcCCCCCcHHHHHHHcCCHH
Confidence            99999999999999999999999999999999999999999999998731         334778999999999999999


Q ss_pred             HHHHHHhh
Q psy2859         165 PVRVALNL  172 (534)
Q Consensus       165 ~v~~Ll~~  172 (534)
                      ++++|+++
T Consensus       152 ~~~~Ll~~  159 (162)
T 1ihb_A          152 VVSLMQAN  159 (162)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99999976

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=2.3e-27  Score=209.67  Aligned_cols=150  Identities=21%  Similarity=0.236  Sum_probs=140.7

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      +++|+.|+..|+.+.++.|+.. |++++ .|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTC
T ss_pred             cHHHHHHHHcCCHHHHHHHHHc-CCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCh
Confidence            5789999999999999888877 88887 488999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      .+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..|+.+++
T Consensus        80 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B           80 ANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT----------QSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----------cCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999999743          477899999999999999999


Q ss_pred             HHH
Q psy2859         167 RVA  169 (534)
Q Consensus       167 ~~L  169 (534)
                      ++|
T Consensus       150 ~~L  152 (153)
T 1awc_B          150 EIL  152 (153)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            886

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=2.4e-27  Score=223.02  Aligned_cols=178  Identities=22%  Similarity=0.258  Sum_probs=158.7

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga-~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .++|+.|+..|+.+.++.|| +.|++++..|..|+||||+|+..|+.+++++|+++|+ +++. .+..|.||||+|+..|
T Consensus        26 ~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~  103 (223)
T 2f8y_A           26 ETALHLAARYSRSDAAKRLL-EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLA  103 (223)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTC-CCTTCCCHHHHHHHHT
T ss_pred             CchHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCcHHHHHHHhC
Confidence            45566666777766666555 5599999999999999999999999999999999987 8888 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..|+.++
T Consensus       104 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~  173 (223)
T 2f8y_A          104 VEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM----------QNNREETPLFLAAREGSYET  173 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTCCCHHHHHHHHTCHHH
T ss_pred             cHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCcCHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999743          46789999999999999999


Q ss_pred             HHHHHhh------------CCcccccccchHHHHHHHHHhhhh
Q psy2859         166 VRVALNL------------LPSLISHLPSVRKVVSLLSEKQMK  196 (534)
Q Consensus       166 v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~~~  196 (534)
                      +++|+++            +|++++...+..+++++|.+.+..
T Consensus       174 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~  216 (223)
T 2f8y_A          174 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV  216 (223)
T ss_dssp             HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred             HHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence            9999986            577778888888999999775543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.95  E-value=1.9e-27  Score=218.61  Aligned_cols=155  Identities=17%  Similarity=0.142  Sum_probs=143.5

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.|+..|+.+.+..|+.. |++++..|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus        35 g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           35 NRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             CCCHHHHHHHHTCGGGHHHHHHH-HCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHh-ccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcC
Confidence            44677778888888777777765 999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++.          .+..|.|||++|+..|+.++
T Consensus       113 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t~l~~A~~~~~~~~  182 (192)
T 2rfm_A          113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA----------RDLTGLTAEASARIFGRQEV  182 (192)
T ss_dssp             CHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------BCTTSCBHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHHHHhCcHHH
Confidence            99999999999999999999999999999999999999999999999743          47789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|+++
T Consensus       183 v~~Ll~~  189 (192)
T 2rfm_A          183 IKIFTEV  189 (192)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999875

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=3.2e-27  Score=223.47  Aligned_cols=181  Identities=23%  Similarity=0.251  Sum_probs=153.2

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      -....++++.||..|+.+.++.+|...+..++..|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+
T Consensus         3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~   81 (231)
T 3aji_A            3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAA   81 (231)
T ss_dssp             CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHH
T ss_pred             CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHHH
Confidence            345677888888899999888888887767788888899999999999999999999999988888 7888899999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcC
Q psy2859          83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVN  162 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  162 (534)
                      ..|+.+++++|+++|++++.++..|.||||+|+..+..+++++|++.|++++.          .+..|.||||+|+..|+
T Consensus        82 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~  151 (231)
T 3aji_A           82 SAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDA----------KDHYDATAMHRAAAKGN  151 (231)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHHTC
T ss_pred             HcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCcHHHHHHHcCC
Confidence            99999999999999988888888899999999988888899999888888643          36678888888888888


Q ss_pred             chHHHHHHhh------------CCcccccccchHHHHHHHHHhh
Q psy2859         163 IHPVRVALNL------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       163 ~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                      .+++++|+++            +|++.+...+..++++.|.+.+
T Consensus       152 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  195 (231)
T 3aji_A          152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQG  195 (231)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            8888888865            6788888888888888887653

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=3.2e-27  Score=223.45  Aligned_cols=176  Identities=23%  Similarity=0.238  Sum_probs=155.0

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.|+..|+.+.++.|+ +.|++++..|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus        40 g~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~  117 (231)
T 3aji_A           40 SRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKN  117 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHH-HTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHH-HhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcC
Confidence            346666777777777666555 55999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..++.++
T Consensus       118 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~  187 (231)
T 3aji_A          118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI----------QDTEGNTPLHLACDEERVEE  187 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC----------CCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc----------cCCCCCCHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999754          46789999999999999999


Q ss_pred             HHHHHhh------------CCcccccccchHHHHHHHHHh
Q psy2859         166 VRVALNL------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       166 v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      +++|++.            +|++++...+...++++|.+.
T Consensus       188 v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~  227 (231)
T 3aji_A          188 AKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEGE  227 (231)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHccc
Confidence            9999988            456666666666666666543

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=9.9e-28  Score=214.80  Aligned_cols=157  Identities=21%  Similarity=0.193  Sum_probs=147.0

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL   83 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~   83 (534)
                      +.+.++++.|+..|+.+.++.+|...+.+++..+..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+.
T Consensus         6 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~   84 (165)
T 3twr_A            6 SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACS   84 (165)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHH
T ss_pred             chhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc-cCCCCCCHHHHHHH
Confidence            44568899999999999999999988899999999999999999999999999999999999999 89999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCc
Q psy2859          84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNI  163 (534)
Q Consensus        84 ~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~  163 (534)
                      .|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++.|++++          ..+..|.||||+|.. ++.
T Consensus        85 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~a~~-~~~  153 (165)
T 3twr_A           85 YGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT----------KKNRDGNTPLDLVKD-GDT  153 (165)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT----------CCCTTSCCTGGGSCT-TCH
T ss_pred             cCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc----------ccCCCCCChhHhHhc-CCh
Confidence            999999999999999999999999999999999999999999999999974          347789999999877 999


Q ss_pred             hHHHHHHhh
Q psy2859         164 HPVRVALNL  172 (534)
Q Consensus       164 ~~v~~Ll~~  172 (534)
                      +++++|++.
T Consensus       154 ~i~~~L~~~  162 (165)
T 3twr_A          154 DIQDLLRGD  162 (165)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHhhc
Confidence            999999875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=1.3e-27  Score=233.04  Aligned_cols=180  Identities=21%  Similarity=0.172  Sum_probs=156.6

Q ss_pred             CCCc-hhHHHHHHhCCHHHHHHHHHhCCCC---CccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2859           4 PMEG-NEIFDFISKNDIDNVQKLLSEHKLR---VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH   79 (534)
Q Consensus         4 ~~~~-~~l~~aa~~g~~~~v~~lL~~~g~~---~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh   79 (534)
                      +.+| ++||.||..|+.+.|..||.. |++   +|.+|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||
T Consensus         6 d~~g~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~   83 (282)
T 1oy3_D            6 TEDGDTALHLAVIHQHEPFLDFLLGF-SAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALH   83 (282)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHH-HTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHH
Confidence            4455 566666666776666655554 777   888999999999999999999999999999999999 8999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCC-----------------------------------------------CCCCCCCCCCHHH
Q psy2859          80 FAALSGKDDVCACLLSAGAK-----------------------------------------------SYATNSVGRTASQ  112 (534)
Q Consensus        80 ~A~~~g~~~iv~~Ll~~ga~-----------------------------------------------~~~~~~~G~TpL~  112 (534)
                      +|+..|+.+++++|+++|++                                               ++..+..|.||||
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~  163 (282)
T 1oy3_D           84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLH  163 (282)
T ss_dssp             HHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHHH
T ss_pred             HHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHH
Confidence            99999999999999998865                                               6778889999999


Q ss_pred             HHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccc
Q psy2859         113 MAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHL  180 (534)
Q Consensus       113 ~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~  180 (534)
                      +|+..|+.+++++|++.|++++..         .+..|.||||+|+..|+.++|++|++.            +|++++..
T Consensus       164 ~A~~~g~~~~v~~Ll~~g~~~~~~---------~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~  234 (282)
T 1oy3_D          164 VAVIHKDAEMVRLLRDAGADLNKP---------EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL  234 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCC---------CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCC---------CCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHH
Confidence            999999999999999999998543         123499999999999999999999976            78889999


Q ss_pred             cchHHHHHHHHHhh
Q psy2859         181 PSVRKVVSLLSEKQ  194 (534)
Q Consensus       181 ~~~~~~~~~l~~~~  194 (534)
                      .+...++++|.+.+
T Consensus       235 ~~~~~~v~~Ll~~g  248 (282)
T 1oy3_D          235 RPNPILARLLRAHG  248 (282)
T ss_dssp             SSCHHHHHHHHHTT
T ss_pred             cCCcHHHHHHHHcC
Confidence            99999999996544

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=1.9e-27  Score=228.63  Aligned_cols=177  Identities=21%  Similarity=0.246  Sum_probs=154.8

Q ss_pred             CCCc-hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCchHHHHH
Q psy2859           4 PMEG-NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHGYSALHFA   81 (534)
Q Consensus         4 ~~~~-~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga-~vn~~~~~~G~TpLh~A   81 (534)
                      +..| ++|+.|+..|+.+.|+.| .+.|++++..|..|+||||+|+..|+.+++++|+++|+ +++. .+..|.||||+|
T Consensus        54 d~~g~t~L~~A~~~g~~~~v~~L-l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A  131 (253)
T 1yyh_A           54 DRTGETALHLAARYSRSDAAKRL-LEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILA  131 (253)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHHHH-HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTC-CCTTCCCHHHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHH-HHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-cCCCCCcHHHHH
Confidence            3444 556666666666655554 45699999999999999999999999999999999987 8888 899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859          82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus        82 ~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      +..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..|
T Consensus       132 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~tpL~~A~~~~  201 (253)
T 1yyh_A          132 ARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM----------QNNREETPLFLAAREG  201 (253)
T ss_dssp             HHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHHT
T ss_pred             HHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999743          4778999999999999


Q ss_pred             CchHHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         162 NIHPVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       162 ~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      +.+++++|+++            +|++++...+..+++++|..
T Consensus       202 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          202 SYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHHHH
Confidence            99999999987            56777888888888888854

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.8e-27  Score=216.20  Aligned_cols=157  Identities=20%  Similarity=0.234  Sum_probs=147.9

Q ss_pred             CCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      ...++++.|+..|+.+.|+.+|...+.++|..|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..
T Consensus         4 ~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~   82 (179)
T 3f6q_A            4 EFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASH   82 (179)
T ss_dssp             ---CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHc
Confidence            3457899999999999999999998999999999999999999999999999999999999999 899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      |+.++|++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++.          .+..|.|||++|+..++.+
T Consensus        83 ~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~tpl~~A~~~~~~~  152 (179)
T 3f6q_A           83 GHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI----------CNKYGEMPVDKAKAPLREL  152 (179)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSB----------CCTTSCCGGGGSCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcch----------hccCCCCcHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999854          4778999999999999999


Q ss_pred             HHHHHHhh
Q psy2859         165 PVRVALNL  172 (534)
Q Consensus       165 ~v~~Ll~~  172 (534)
                      ++++|+++
T Consensus       153 ~~~~L~~~  160 (179)
T 3f6q_A          153 LRERAEKM  160 (179)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            99999987

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.95  E-value=1.7e-26  Score=227.43  Aligned_cols=187  Identities=21%  Similarity=0.272  Sum_probs=150.6

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      ++++++.|+..|+.+.|..||.. |+++|..|..|.||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHT
T ss_pred             CccHHHHHHHcCCHHHHHHHHHc-CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcC
Confidence            35677888888998888888776 999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhh-cCCceeecc----------------CCCCCCCCCCC
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAK-SEVDYYIVP----------------RGLETTPKLDP  148 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~-~~~~~~~~~----------------~~~~~~~~~~~  148 (534)
                      +.++|++|+++|++++..+..|.||||+|+..+..++++.++. .+++++...                .+.......+.
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  197 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcC
Confidence            9999999999999999999888888888888877777765543 344432210                01111123355


Q ss_pred             CCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHHhh
Q psy2859         149 ILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                      .|.||||+|+..|+.++|++|++.            +|++.+...+...+++.|.+.+
T Consensus       198 ~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  255 (299)
T 1s70_B          198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (299)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence            678888888888888888888864            6777888888888888886644

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.95  E-value=2e-26  Score=225.63  Aligned_cols=175  Identities=19%  Similarity=0.134  Sum_probs=157.4

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++|+.||..|+.+.|..||. .|+++|.+|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+
T Consensus        60 ~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~~~  137 (285)
T 3d9h_A           60 WSPMHEAAIHGHQLSLRNLIS-QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGS  137 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-TTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHH-CCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCH
Confidence            466777777777777666665 5999999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      .++|++|+++|++++..+ .|.||||+|+..|+.+++++|++.|++++.          .+..|.||||+|+..|+.+++
T Consensus       138 ~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------~d~~g~t~L~~A~~~~~~~~v  206 (285)
T 3d9h_A          138 WDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDH----------KISHLGTPLYLACENQQRACV  206 (285)
T ss_dssp             HHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTC----------CBTTTBCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHHHHcCcHHHH
Confidence            999999999999998654 599999999999999999999999998743          467899999999999999999


Q ss_pred             HHHHhh-----------CCcccccccchHHHHHHHHHhh
Q psy2859         167 RVALNL-----------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       167 ~~Ll~~-----------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                      ++|++.           +|++.+...+..++++.|.+.+
T Consensus       207 ~~Ll~~ga~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  245 (285)
T 3d9h_A          207 KKLLESGADVNQGKGQDSPLHAVVRTASEELACLLMDFG  245 (285)
T ss_dssp             HHHHHTTCCTTCCBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999976           6788888889999999997654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=2.2e-26  Score=218.93  Aligned_cols=178  Identities=20%  Similarity=0.198  Sum_probs=161.5

Q ss_pred             CchhHHHHHHhCCHHHHHHHHH---hCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLS---EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~---~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      +.++||.|+..|+.+.+..|+.   +.|.++|..|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~   87 (241)
T 1k1a_A            9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLAC   87 (241)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHH
Confidence            4577778888888888888776   57999999999999999999999999999999999999999 8999999999999


Q ss_pred             HcCCHHHHHHHHhcCC----CCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCC-CCCCchHHHH
Q psy2859          83 LSGKDDVCACLLSAGA----KSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLD-PILAEPLHTF  157 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga----~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~-~~g~t~L~~A  157 (534)
                      ..|+.+++++|++.|+    +++..+..|.||||+|+..+..+++++|++.|++++..          + ..|.||||+|
T Consensus        88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~----------~~~~g~t~L~~A  157 (241)
T 1k1a_A           88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV----------DIKSGRSPLIHA  157 (241)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCC----------CTTTCCCHHHHH
T ss_pred             HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc----------cccCCCcHHHHH
Confidence            9999999999999987    88999999999999999999999999999999997533          4 5799999999


Q ss_pred             HHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHHhh
Q psy2859         158 IMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       158 ~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                      +..|+.+++++|++.            +|++.+...+..++++.|.+.+
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  206 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSG  206 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999986            5788888888899999997643

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.94  E-value=1.2e-26  Score=233.27  Aligned_cols=130  Identities=27%  Similarity=0.292  Sum_probs=121.3

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.||..|+.+.|..+|...++++|..|..|.||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA-KDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTT
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHCC
Confidence            357899999999999999999999999999999999999999999999999999999999998 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeec
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIV  136 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~  136 (534)
                      +.++|++|+++|++++..|..|.||||+|+..++.+++++|++.|++++..
T Consensus       103 ~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~  153 (351)
T 3utm_A          103 HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLV  153 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc
Confidence            999999999999999999999999999999999999999999999887654

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=3.7e-26  Score=217.00  Aligned_cols=176  Identities=21%  Similarity=0.209  Sum_probs=159.3

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.||..|+.+.+..|+. .|++++..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   88 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQ-AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEGSTCLHLAAKKG   88 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC-CCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCcHHHHHHHHH-cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcC
Confidence            4577777888888776665554 5999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          86 KDDVCACLLSAG-AKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        86 ~~~iv~~Ll~~g-a~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      +.+++++|++.| ++++..+..|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..|+.+
T Consensus        89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~  158 (237)
T 3b7b_A           89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI----------RDNEENICLHWAAFSGCVD  158 (237)
T ss_dssp             CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHHCCHH
T ss_pred             CHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc----------cCCCCCCHHHHHHHCCCHH
Confidence            999999999998 89999999999999999999999999999999998743          4678999999999999999


Q ss_pred             HHHHHHhh------------CCcccccccchHHHHHHHHHh
Q psy2859         165 PVRVALNL------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       165 ~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      ++++|++.            +|++.+...+..++++.|.+.
T Consensus       159 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (237)
T 3b7b_A          159 IAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR  199 (237)
T ss_dssp             HHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc
Confidence            99999976            678888888889999999654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=2.5e-26  Score=218.56  Aligned_cols=175  Identities=19%  Similarity=0.148  Sum_probs=153.2

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC----CCCCCCCCCCchHHHHHH
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA----DVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga----~vn~~~~~~G~TpLh~A~   82 (534)
                      .++|+.|+..|+.+.+. +|.+.|++++..|..|.||||+|+..|+.+++++|++.|+    +++. .+..|.||||+|+
T Consensus        47 ~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~  124 (241)
T 1k1a_A           47 QTPLHLAVITTLPSVVR-LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEA-RNYDGLTALHVAV  124 (241)
T ss_dssp             CCHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTC-CCTTSCCHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHH-HHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccc-cCcCCCcHHHHHH
Confidence            35566666666665554 5555699999999999999999999999999999999988    8888 8999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859          83 LSGKDDVCACLLSAGAKSYATN-SVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~-~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      ..|+.+++++|++.|++++..+ ..|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..|
T Consensus       125 ~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~  194 (241)
T 1k1a_A          125 NTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA----------QMYSGSSALHSASGRG  194 (241)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------BCTTSCBHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHcC
Confidence            9999999999999999999998 7899999999999999999999999999743          4778999999999999


Q ss_pred             CchHHHHHHhh------------CCcccccccchHHHHHHHHHh
Q psy2859         162 NIHPVRVALNL------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       162 ~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      +.+++++|+++            +|++++...+..++++.|.++
T Consensus       195 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~  238 (241)
T 1k1a_A          195 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR  238 (241)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHTC----
T ss_pred             CHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccC
Confidence            99999999976            688888888888888887543

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.94  E-value=1.5e-26  Score=207.98  Aligned_cols=129  Identities=31%  Similarity=0.416  Sum_probs=111.4

Q ss_pred             CCCch-hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           4 PMEGN-EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         4 ~~~~~-~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      +..|. +++.|+..++...+ .+|.+.|++++.+|..|+||||+|+..|+.++|++||++|+++|. +|..|+||||+|+
T Consensus        34 d~~g~t~l~~a~~~~~~~~~-~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~-~d~~G~TpLh~A~  111 (169)
T 4gpm_A           34 DSDGRTPLHHAAENGHKEVV-KLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAA  111 (169)
T ss_dssp             CTTSCCHHHHHHHTTCHHHH-HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHH-HHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHH
Confidence            44454 55555555555554 555566999999999999999999999999999999999999999 8999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCcee
Q psy2859          83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYY  134 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~  134 (534)
                      ..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus       112 ~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie  163 (169)
T 4gpm_A          112 ENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE  163 (169)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred             HcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence            9999999999999999999999999999999999999999999999999985

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.94  E-value=8.3e-27  Score=224.18  Aligned_cols=165  Identities=21%  Similarity=0.173  Sum_probs=138.2

Q ss_pred             HHHHHHHHHhCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcC
Q psy2859          19 IDNVQKLLSEHKLRVDL-YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAG   97 (534)
Q Consensus        19 ~~~v~~lL~~~g~~~n~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~g   97 (534)
                      ...+.++|.+.|++++. .|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+.+++++|++.|
T Consensus        35 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~  113 (253)
T 1yyh_A           35 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNR  113 (253)
T ss_dssp             -----------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHST
T ss_pred             ChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            44555555566999865 589999999999999999999999999999999 8999999999999999999999999998


Q ss_pred             C-CCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh----
Q psy2859          98 A-KSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL----  172 (534)
Q Consensus        98 a-~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~----  172 (534)
                      + +++..+..|.||||+|+..+..+++++|++.|++++.          .+..|.||||+|+..|+.+++++|++.    
T Consensus       114 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~----------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~  183 (253)
T 1yyh_A          114 ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA----------VDDLGKSALHWAAAVNNVDAAVVLLKNGANK  183 (253)
T ss_dssp             TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTC----------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            7 8999999999999999999999999999999999754          467899999999999999999999976    


Q ss_pred             --------CCcccccccchHHHHHHHHHhh
Q psy2859         173 --------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       173 --------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                              +|++.+...+..++++.|.+.+
T Consensus       184 ~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          184 DMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence                    6788888889999999997643

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=6.3e-27  Score=229.23  Aligned_cols=172  Identities=19%  Similarity=0.199  Sum_probs=151.4

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++|+.|+..|+.+.|..||. .|+++|..|  |+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+
T Consensus        32 ~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~  107 (285)
T 3kea_A           32 HSASYYAIADNNVRLVCTLLN-AGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTALYYAVDSGN  107 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH-TTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHh-CCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHcCC
Confidence            456666666676666655555 599999874  99999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCC-CCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          87 DDVCACLLSAGAKSYATNSVG-RTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G-~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      .++|++|+++|++++..+..| .||||+|+..|+.+++++|+..|++..           ....|.||||+|+..|+.++
T Consensus       108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~-----------~~~~g~t~L~~A~~~g~~~~  176 (285)
T 3kea_A          108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-----------DLAILLSCIHITIKNGHVDM  176 (285)
T ss_dssp             HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC-----------CCSTHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc-----------cccCCccHHHHHHHcChHHH
Confidence            999999999999999999999 799999999999999999999987752           11279999999999999999


Q ss_pred             HHHHHhh------------CC-cccccccchHHHHHHHHHh
Q psy2859         166 VRVALNL------------LP-SLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       166 v~~Ll~~------------~p-~~~~~~~~~~~~~~~l~~~  193 (534)
                      +++|+++            +| ++++...+..++++.|.+.
T Consensus       177 v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~  217 (285)
T 3kea_A          177 MILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY  217 (285)
T ss_dssp             HHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTS
T ss_pred             HHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHc
Confidence            9999976            54 8889999999999999654

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=6.4e-27  Score=225.24  Aligned_cols=180  Identities=17%  Similarity=0.170  Sum_probs=156.2

Q ss_pred             CchhHHHHHHhCCHHHH---HHHHHhCCCCCcc----CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCC------
Q psy2859           6 EGNEIFDFISKNDIDNV---QKLLSEHKLRVDL----YDEHGMTPLQHAAYK---GNKQICQLLLDHGADVNSG------   69 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v---~~lL~~~g~~~n~----~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~------   69 (534)
                      +.++||.||..|+.+.|   .++|.+.|+++|.    .|..|+||||+|+..   |+.++|++|+++|++++..      
T Consensus         2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   81 (256)
T 2etb_A            2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA   81 (256)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence            45789999999999854   4455567999998    899999999999999   9999999999999988741      


Q ss_pred             ----CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-------------CCCHHHHHHHhcHHHHHHHHhh---c
Q psy2859          70 ----RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSV-------------GRTASQMAAFVVVAVINNYIAK---S  129 (534)
Q Consensus        70 ----~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~-------------G~TpL~~A~~~~~~~i~~~L~~---~  129 (534)
                          .|..|.||||+|+..|+.++|++|+++|++++..+..             |.||||+|+..|+.+++++|++   .
T Consensus        82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~  161 (256)
T 2etb_A           82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ  161 (256)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence                2367999999999999999999999999999999886             9999999999999999999999   8


Q ss_pred             CCceeeccCCCCCCCCCCCCCCchHHHHHH--hcCch-------HHHHHHhh-------------------CCccccccc
Q psy2859         130 EVDYYIVPRGLETTPKLDPILAEPLHTFIM--QVNIH-------PVRVALNL-------------------LPSLISHLP  181 (534)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~--~~~~~-------~v~~Ll~~-------------------~p~~~~~~~  181 (534)
                      |++++.          .|..|.||||+|+.  .++.+       ++++|++.                   +|++++...
T Consensus       162 ga~~n~----------~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~  231 (256)
T 2etb_A          162 PASLEA----------TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE  231 (256)
T ss_dssp             CCCTTC----------CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHT
T ss_pred             CCCcCc----------cCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHh
Confidence            999854          47789999999999  77887       99999864                   567777777


Q ss_pred             chHHHHHHHHHhhh
Q psy2859         182 SVRKVVSLLSEKQM  195 (534)
Q Consensus       182 ~~~~~~~~l~~~~~  195 (534)
                      +..++++.|.+++.
T Consensus       232 g~~~~v~~Ll~~g~  245 (256)
T 2etb_A          232 GKIEIFRHILQREF  245 (256)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHhCCC
Confidence            77888888876543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=4e-26  Score=215.30  Aligned_cols=176  Identities=17%  Similarity=0.199  Sum_probs=153.5

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCchHHHHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD--VNSGRHEHGYSALHFAAL   83 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~--vn~~~~~~G~TpLh~A~~   83 (534)
                      +.++|+.|+..|+.+.+..+|.......+..|..|.||||+|+..|+.+++++|+++|++  ++...+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            567899999999999999888884444455899999999999999999999999999954  444357899999999999


Q ss_pred             cCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859          84 SGKDDVCACLLSAG--AKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus        84 ~g~~~iv~~Ll~~g--a~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      .|+.+++++|+++|  ++++..+..|.||||+|+..+..+++++|++.|++++.          .+..|.||||+|+..|
T Consensus        82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~  151 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI----------KDKFNQIPLHRAASVG  151 (228)
T ss_dssp             HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCTTSCCHHHHHHHTT
T ss_pred             cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccc----------cCCCCCCHHHHHHHcC
Confidence            99999999999998  88999999999999999999999999999999998743          4677999999999999


Q ss_pred             CchHHHHHHhh-------------CCcccccccchHHHHHHHH
Q psy2859         162 NIHPVRVALNL-------------LPSLISHLPSVRKVVSLLS  191 (534)
Q Consensus       162 ~~~~v~~Ll~~-------------~p~~~~~~~~~~~~~~~l~  191 (534)
                      +.+++++|++.             +|++.+...+...+++.|.
T Consensus       152 ~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          152 SLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             CHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999976             5778888888888999997

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=2.9e-27  Score=224.79  Aligned_cols=181  Identities=19%  Similarity=0.181  Sum_probs=155.7

Q ss_pred             CCCc-hhHHHHHHhCCHHHHHHHHHh---CCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2859           4 PMEG-NEIFDFISKNDIDNVQKLLSE---HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALH   79 (534)
Q Consensus         4 ~~~~-~~l~~aa~~g~~~~v~~lL~~---~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh   79 (534)
                      +.+| ++||.|+..|+.+.+..||..   .++++|..|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||
T Consensus         5 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~   83 (236)
T 1ikn_D            5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLH   83 (236)
T ss_dssp             --CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHH
T ss_pred             CCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHH
Confidence            4444 667777777777776666644   2457999999999999999999999999999999999999 8999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCC------CCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCC-CCCc
Q psy2859          80 FAALSGKDDVCACLLSAGAK------SYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDP-ILAE  152 (534)
Q Consensus        80 ~A~~~g~~~iv~~Ll~~ga~------~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~-~g~t  152 (534)
                      +|+..|+.+++++|++.|++      ++..+..|.||||+|+..++.+++++|++.|++++..          +. .|.|
T Consensus        84 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------~~~~g~t  153 (236)
T 1ikn_D           84 LACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ----------EPCNGRT  153 (236)
T ss_dssp             HHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC----------CTTTCCC
T ss_pred             HHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC----------CCCCCCC
Confidence            99999999999999999876      4677889999999999999999999999999998543          44 7999


Q ss_pred             hHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHHhhh
Q psy2859         153 PLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSEKQM  195 (534)
Q Consensus       153 ~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~~  195 (534)
                      |||+|+..|+.++|++|+++            +|++++...+...+++.|.+.+.
T Consensus       154 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          154 ALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             HHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            99999999999999999976            78899999999999999976543

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=9.3e-26  Score=212.80  Aligned_cols=157  Identities=18%  Similarity=0.169  Sum_probs=137.0

Q ss_pred             CCCc-hhHHHHHHhCCHHHHHHHHHhCC--CCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCchH
Q psy2859           4 PMEG-NEIFDFISKNDIDNVQKLLSEHK--LRVDL-YDEHGMTPLQHAAYKGNKQICQLLLDHG--ADVNSGRHEHGYSA   77 (534)
Q Consensus         4 ~~~~-~~l~~aa~~g~~~~v~~lL~~~g--~~~n~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g--a~vn~~~~~~G~Tp   77 (534)
                      +..| ++|+.|+..|+.+.+. +|.+.|  .+++. .+..|+||||+|+..|+.+++++|+++|  ++++. .+..|.||
T Consensus        33 ~~~g~t~L~~A~~~~~~~~v~-~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~-~~~~g~t~  110 (228)
T 2dzn_A           33 DQDGRIPLHWSVSFQAHEITS-FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK-ITNQGVTC  110 (228)
T ss_dssp             CTTSCCHHHHHHHTTCHHHHH-HHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTC-CCTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHH-HHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccc-CCcCCCCH
Confidence            4444 5555555666555554 555558  66666 7899999999999999999999999999  88888 89999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcC-CceeeccCCCCCCCCCCCCCCchHHH
Q psy2859          78 LHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSE-VDYYIVPRGLETTPKLDPILAEPLHT  156 (534)
Q Consensus        78 Lh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~  156 (534)
                      ||+|+..|+.+++++|+++|++++.++..|.||||+|+..++.+++++|++.| ++++.          .|..|.||||+
T Consensus       111 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------~d~~g~t~L~~  180 (228)
T 2dzn_A          111 LHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW----------QDKQGWTPLFH  180 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCC----------CCTTSCCHHHH
T ss_pred             HHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccC----------cCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999 87743          47789999999


Q ss_pred             HHHhcCchHHHHHH-hh
Q psy2859         157 FIMQVNIHPVRVAL-NL  172 (534)
Q Consensus       157 A~~~~~~~~v~~Ll-~~  172 (534)
                      |+..|+.+++++|+ +.
T Consensus       181 A~~~~~~~~v~~Ll~~~  197 (228)
T 2dzn_A          181 ALAEGHGDAAVLLVEKY  197 (228)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhc
Confidence            99999999999999 54

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=1.4e-25  Score=213.03  Aligned_cols=172  Identities=23%  Similarity=0.256  Sum_probs=150.8

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG-ADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g-a~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .++++.|+..|+.+.+. +|.+.|++++..+..|.||||+|+..|+.+++++|++.| ++++. .+..|.||||+|+..|
T Consensus        45 ~t~L~~A~~~~~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~  122 (237)
T 3b7b_A           45 RTPLMEAAENNHLEAVK-YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC-QDDGGWTPMIWATEYK  122 (237)
T ss_dssp             CCHHHHHHHTTCHHHHH-HHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHhCCHHHHH-HHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCccc-CCCCCCCHHHHHHHcC
Confidence            45666666666666555 555669999999999999999999999999999999998 89998 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++.++..|.||||+|+..+..+++++|++.|++++.          .+..|.||||+|+..++.++
T Consensus       123 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~  192 (237)
T 3b7b_A          123 HVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA----------VNIHGDSPLHIAARENRYDC  192 (237)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTC----------CCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHhCCHhH
Confidence            99999999999999999999999999999999999999999999999743          46789999999999999999


Q ss_pred             HHHHHhh------------CCcccccccchHHHHHHH
Q psy2859         166 VRVALNL------------LPSLISHLPSVRKVVSLL  190 (534)
Q Consensus       166 v~~Ll~~------------~p~~~~~~~~~~~~~~~l  190 (534)
                      +++|+++            +|++++...+....+..|
T Consensus       193 v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l  229 (237)
T 3b7b_A          193 VVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM  229 (237)
T ss_dssp             HHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHH
T ss_pred             HHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999977            566777776666544444

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.94  E-value=5e-26  Score=215.43  Aligned_cols=161  Identities=18%  Similarity=0.176  Sum_probs=137.9

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCC-----ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC--------
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRV-----DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHE--------   72 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~-----n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~--------   72 (534)
                      +.++|+.|+..|+.+.+..||.. |+++     +..|..|+||||+|+..|+.+++++|+++|++++. .+.        
T Consensus        37 g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~~~~~~~  114 (232)
T 2rfa_A           37 GETALHIAALYDNLEAAMVLMEA-APELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA-RATGSVFHYRP  114 (232)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCCSGGGSCCT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHc-CchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCc-ccCCcceeecc
Confidence            34566667777777666666554 8776     66788999999999999999999999999999998 544        


Q ss_pred             -----CCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHH----HHHhhcCCceeeccCCCCCC
Q psy2859          73 -----HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVIN----NYIAKSEVDYYIVPRGLETT  143 (534)
Q Consensus        73 -----~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~----~~L~~~~~~~~~~~~~~~~~  143 (534)
                           .|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++.+++    ++|+..|++.....    ..
T Consensus       115 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~----~~  190 (232)
T 2rfa_A          115 HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS----LE  190 (232)
T ss_dssp             TCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCC----GG
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhh----hh
Confidence                 799999999999999999999999999999999999999999999888877    99999999863211    00


Q ss_pred             CCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         144 PKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       144 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ...+..|.||||+|+..|+.+++++|+++
T Consensus       191 ~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          191 LVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             GCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             ccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            23577899999999999999999999988

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=6.6e-26  Score=209.55  Aligned_cols=154  Identities=20%  Similarity=0.165  Sum_probs=138.5

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL-DHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll-~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .++|+.|+..|+.+.++.|| +.|++++..|..|.||||+|+..|+.+++++|+ ..+++++. .+..|.||||+|+..|
T Consensus        40 ~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~  117 (201)
T 3hra_A           40 NTPLNIAVHNNDIEIAKALI-DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK-HNRYGGNALIPAAEKG  117 (201)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH-HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTC-CCTTSCCSHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCccccc-ccCCCCcHHHHHHHcC
Confidence            46677777777766665555 559999999999999999999999999999999 66789998 8999999999999999


Q ss_pred             CHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHhcH-----HHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHH
Q psy2859          86 KDDVCACLLSAG-AKSYATNSVGRTASQMAAFVVV-----AVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIM  159 (534)
Q Consensus        86 ~~~iv~~Ll~~g-a~~~~~~~~G~TpL~~A~~~~~-----~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  159 (534)
                      +.+++++|+++| ++++.+|..|.||||+|+..+.     .+++++|++.|++++.          .+..|.||||+|+.
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t~l~~A~~  187 (201)
T 3hra_A          118 HIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI----------KDNSGRTAMDYANQ  187 (201)
T ss_dssp             CHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCc----------cCCCCCCHHHHHHH
Confidence            999999999999 9999999999999999998865     8999999999999843          47789999999999


Q ss_pred             hcCchHHHHHHhh
Q psy2859         160 QVNIHPVRVALNL  172 (534)
Q Consensus       160 ~~~~~~v~~Ll~~  172 (534)
                      .|+.+++++|+++
T Consensus       188 ~~~~~~~~~Ll~~  200 (201)
T 3hra_A          188 KGYTEISKILAQY  200 (201)
T ss_dssp             HTCHHHHHHHHTC
T ss_pred             cCCHhHHHHHHhc
Confidence            9999999999875

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=1.4e-25  Score=219.60  Aligned_cols=171  Identities=20%  Similarity=0.182  Sum_probs=147.6

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++|+.|+..|+.+.+. +|.+.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.  +..|.||||+|+..|+
T Consensus        93 ~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~  169 (285)
T 3d9h_A           93 VSPLHEACLGGHLSCVK-ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP--ESDLASPIHEAARRGH  169 (285)
T ss_dssp             CCHHHHHHHTTCHHHHH-HHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC--SCTTSCHHHHHHHHTC
T ss_pred             CCHHHHHHHCCcHHHHH-HHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC--CCCCCCHHHHHHHcCC
Confidence            35566666666665555 55556999999999999999999999999999999999999986  4569999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      .+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++           .+..|.||||+|+..++.+++
T Consensus       170 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-----------~~~~g~t~L~~A~~~~~~~~v  238 (285)
T 3d9h_A          170 VECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN-----------QGKGQDSPLHAVVRTASEELA  238 (285)
T ss_dssp             HHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT-----------CCBTTBCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC-----------CCCCCCCHHHHHHHcCCHHHH
Confidence            999999999999999999999999999999999999999999999864           266799999999999999999


Q ss_pred             HHHHhh------------CCcccccccchHHHHHHHHHh
Q psy2859         167 RVALNL------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       167 ~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      ++|+++            +|++++..  ...+++.|.+.
T Consensus       239 ~~Ll~~gad~~~~d~~g~t~l~~A~~--~~~~~~~Ll~~  275 (285)
T 3d9h_A          239 CLLMDFGADTQAKNAEGKRPVELVPP--ESPLAQLFLER  275 (285)
T ss_dssp             HHHHHTTCCTTCCCTTSCCGGGGSCT--TSHHHHHHHHH
T ss_pred             HHHHHCCCCCCCcCCCCCCHHHHhcC--ccHHHHHHHHh
Confidence            999987            56666652  34566666553

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.93  E-value=1.5e-26  Score=222.59  Aligned_cols=164  Identities=21%  Similarity=0.130  Sum_probs=135.1

Q ss_pred             CCCc-hhHHHHHHh---CCHHHHHHHHHhCCCCCccC-----------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy2859           4 PMEG-NEIFDFISK---NDIDNVQKLLSEHKLRVDLY-----------DEHGMTPLQHAAYKGNKQICQLLLDHGADVNS   68 (534)
Q Consensus         4 ~~~~-~~l~~aa~~---g~~~~v~~lL~~~g~~~n~~-----------d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   68 (534)
                      +..| ++||.|+..   |+.+.|..|| +.|++++..           |..|+||||+|+..|+.++|++|+++|++++.
T Consensus        40 d~~g~t~L~~A~~~~~~g~~~~v~~Ll-~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  118 (256)
T 2etb_A           40 GSTGKTCLMKAVLNLQDGVNACIMPLL-QIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL  118 (256)
T ss_dssp             TTTTBCHHHHHHHTCBTTBCTTHHHHH-HHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCHHHHHHHccccchHHHHHHHH-hcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            4455 455555555   6666555555 447776633           47899999999999999999999999999998


Q ss_pred             CCCCC-------------CchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCCHHHHHHH--hcHHH-------HH
Q psy2859          69 GRHEH-------------GYSALHFAALSGKDDVCACLLS---AGAKSYATNSVGRTASQMAAF--VVVAV-------IN  123 (534)
Q Consensus        69 ~~~~~-------------G~TpLh~A~~~g~~~iv~~Ll~---~ga~~~~~~~~G~TpL~~A~~--~~~~~-------i~  123 (534)
                       .+..             |.||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+.  .+..+       ++
T Consensus       119 -~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv  197 (256)
T 2etb_A          119 -RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMY  197 (256)
T ss_dssp             -CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             -ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHH
Confidence             6665             9999999999999999999999   999999999999999999998  67777       99


Q ss_pred             HHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         124 NYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       124 ~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ++|++.|++++...   ......|..|.||||+|+..|+.+++++|+++
T Consensus       198 ~~Ll~~ga~~~~~~---~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  243 (256)
T 2etb_A          198 DGLLQMGARLCPTV---QLEEISNHQGLTPLKLAAKEGKIEIFRHILQR  243 (256)
T ss_dssp             HHHHHHHHHHSTTC---CGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHcCCCccccc---ccccccCCCCCCHHHHHHHhCCHHHHHHHHhC
Confidence            99999999983110   00023477899999999999999999999987

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.93  E-value=2.6e-25  Score=209.07  Aligned_cols=156  Identities=23%  Similarity=0.181  Sum_probs=142.9

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++++.|+..|+.+.+..|+...+.+++..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus        58 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~  136 (223)
T 2f8y_A           58 GRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-VDDLGKSALHWAAAVN  136 (223)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTSCBHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcC-cCCCCCcHHHHHHHcC
Confidence            346677777777777777777664559999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++.          .+..|.|||++|+..++.++
T Consensus       137 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t~l~~A~~~~~~~i  206 (223)
T 2f8y_A          137 NVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI----------TDHMDRLPRDIAQERMHHDI  206 (223)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTCCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcc----------ccccCCCHHHHHHHhcchHH
Confidence            99999999999999999999999999999999999999999999998743          47789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|+++
T Consensus       207 ~~~L~~~  213 (223)
T 2f8y_A          207 VRLLDEY  213 (223)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHc
Confidence            9999988

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.93  E-value=6.7e-26  Score=220.78  Aligned_cols=157  Identities=18%  Similarity=0.144  Sum_probs=139.9

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC--------------------
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD--------------------   65 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~--------------------   65 (534)
                      +.++||.|+..|+.+.|+.|| ++|++++.+|..|+||||+|+..|+.+++++|+++|++                    
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll-~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~  123 (282)
T 1oy3_D           45 GQTALHLAAILGEASTVEKLY-AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDT  123 (282)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-HcCCCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcch
Confidence            346677777777776665555 55999999999999999999999999999999998865                    


Q ss_pred             ---------------------------CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CCCHHHHHHHh
Q psy2859          66 ---------------------------VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSV-GRTASQMAAFV  117 (534)
Q Consensus        66 ---------------------------vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~-G~TpL~~A~~~  117 (534)
                                                 ++. .+..|.||||+|+..|+.++|++|+++|++++..+.. |+||||+|+..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~  202 (282)
T 1oy3_D          124 SHAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEA  202 (282)
T ss_dssp             --------------------CCCGGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT
T ss_pred             hcchhhhccccccchhhhhhhhhhhhcCCC-cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHc
Confidence                                       666 7889999999999999999999999999999999864 99999999999


Q ss_pred             cHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhhCC
Q psy2859         118 VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLP  174 (534)
Q Consensus       118 ~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~p  174 (534)
                      ++.+++++|++.|++++.          .+..|.||||+|+..|+.+++++|+++..
T Consensus       203 ~~~~~v~~Ll~~gad~~~----------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  249 (282)
T 1oy3_D          203 QAASVLELLLKAGADPTA----------RMYGGRTPLGSALLRPNPILARLLRAHGA  249 (282)
T ss_dssp             TCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHTSSCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCCCCcc----------cccCCCCHHHHHHHcCCcHHHHHHHHcCC
Confidence            999999999999999854          47789999999999999999999999833

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=2e-26  Score=210.51  Aligned_cols=152  Identities=14%  Similarity=0.116  Sum_probs=136.9

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCC-CCCCcHHHHHHHcCCH----HHHHHHHHCCCCCCCCCCCCCchHHHHH
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNK----QICQLLLDHGADVNSGRHEHGYSALHFA   81 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d-~~g~TpLh~Aa~~g~~----~iv~~Ll~~ga~vn~~~~~~G~TpLh~A   81 (534)
                      .++++.||..|+.+.+..++.. +  ++..+ ..|+||||+|+..|+.    +++++||++|+|+|. .+..|+||||+|
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~-~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~TpLh~a   82 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEK-G--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTKEGTTLFFPL   82 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHH-S--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC-CCTTCCCTHHHH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhc-C--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC-CCCCCCcHHHHH
Confidence            4679999999999999988876 3  45555 7799999999999985    599999999999999 899999999999


Q ss_pred             HHcCC------HHHHHHHHhcCCCCCCCCCCCC-CHHHHHHH-----hcHHHHHHHHhh-cCCceeeccCCCCCCCCCCC
Q psy2859          82 ALSGK------DDVCACLLSAGAKSYATNSVGR-TASQMAAF-----VVVAVINNYIAK-SEVDYYIVPRGLETTPKLDP  148 (534)
Q Consensus        82 ~~~g~------~~iv~~Ll~~ga~~~~~~~~G~-TpL~~A~~-----~~~~~i~~~L~~-~~~~~~~~~~~~~~~~~~~~  148 (534)
                      +..|+      .++|++||++|+++|.+|..|. ||||+|+.     .+..+++++|+. .|++++.          .|.
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~----------~d~  152 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLI----------KDK  152 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTC----------CCT
T ss_pred             HHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcc----------cCC
Confidence            99987      6789999999999999999999 99999998     456779999999 9999854          478


Q ss_pred             CCCchHHHHHHhcCchHHHHHHhh
Q psy2859         149 ILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      .|.||||+|+..|+.++|++|+++
T Consensus       153 ~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          153 WGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             TSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHH
Confidence            899999999999999999999865

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.6e-26  Score=222.79  Aligned_cols=152  Identities=20%  Similarity=0.249  Sum_probs=133.3

Q ss_pred             CCCc-hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           4 PMEG-NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         4 ~~~~-~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      +.+| ++||.||..|+.+.| ++|++.|++++..+..|.||||+|+..++.+++++|++.|+++|. .|..|+||||+|+
T Consensus        83 d~~G~TpLh~A~~~g~~~~v-~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~-~d~~g~TpL~~A~  160 (269)
T 4b93_B           83 SQDGSSPLHVAALHGRADLI-PLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNK-KDLSGNTPLIYAC  160 (269)
T ss_dssp             CTTSCCHHHHHHHTTCTTHH-HHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCcHHHH-HHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCC-CCCCCCCHHHHHH
Confidence            3444 556666666666555 555566999999999999999999999999999999999999999 8999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcC
Q psy2859          83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVN  162 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  162 (534)
                      ..|+.++|++||++|+++|.++..|+||||+|+..|+.+++++|++.|++++.          .|..|.||||+|+.++ 
T Consensus       161 ~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~----------~d~~G~TpL~~A~~~~-  229 (269)
T 4b93_B          161 SGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQV----------LNKRQRTAVDCAEQNS-  229 (269)
T ss_dssp             HTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCTTSCCSGGGSCTTC-
T ss_pred             HCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC----------cCCCCCCHHHHHHhCC-
Confidence            99999999999999999999999999999999999999999999999999854          4788999999998765 


Q ss_pred             chHHHHH
Q psy2859         163 IHPVRVA  169 (534)
Q Consensus       163 ~~~v~~L  169 (534)
                       +++++|
T Consensus       230 -~i~~lL  235 (269)
T 4b93_B          230 -KIMELL  235 (269)
T ss_dssp             -HHHHHT
T ss_pred             -cHHHHH
Confidence             455543

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=3.2e-26  Score=232.19  Aligned_cols=197  Identities=17%  Similarity=0.148  Sum_probs=158.3

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++||.||..|+.+.|..||.. |+++|..|..|+||||+|+..|+.++|++|+++|++++.   ..|.||||+|+..|+
T Consensus        21 ~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A~~~g~   96 (364)
T 3ljn_A           21 MEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLAVMANK   96 (364)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHc-CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHHHHcCC
Confidence            4667777777877777776654 999999999999999999999999999999999997653   478899999999999


Q ss_pred             HHHHHHHHhc----CCCCCC-----------------CCCCCCCHHHHHHHhc--HHHHHHHHhhcCCceeeccCCCCCC
Q psy2859          87 DDVCACLLSA----GAKSYA-----------------TNSVGRTASQMAAFVV--VAVINNYIAKSEVDYYIVPRGLETT  143 (534)
Q Consensus        87 ~~iv~~Ll~~----ga~~~~-----------------~~~~G~TpL~~A~~~~--~~~i~~~L~~~~~~~~~~~~~~~~~  143 (534)
                      .++|++|++.    |++++.                 .+..|.||||+|+..|  +.+++++|++.|++++.        
T Consensus        97 ~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~--------  168 (364)
T 3ljn_A           97 TDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA--------  168 (364)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC--------
T ss_pred             HHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc--------
Confidence            9999999988    777776                 7788899999999988  88999999999888743        


Q ss_pred             CCCCCCCCchHHHHHHhcCchHHHHHHhh-----------------CCcccccccchHHHHHHHHHhhhhcCCCccc---
Q psy2859         144 PKLDPILAEPLHTFIMQVNIHPVRVALNL-----------------LPSLISHLPSVRKVVSLLSEKQMKAGPETNE---  203 (534)
Q Consensus       144 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------------~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---  203 (534)
                        .+..|.||||+|+..|+.++|++|++.                 +|++.+...+...++++|++.+    .+++.   
T Consensus       169 --~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g----ad~~~~d~  242 (364)
T 3ljn_A          169 --KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMG----IDVNMEDN  242 (364)
T ss_dssp             --CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTT----CCTTCCCT
T ss_pred             --cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCCCCCCC
Confidence              366788899999999999999988852                 7888888888888888886543    33322   


Q ss_pred             -------ccccCCCcchHHHHHHHh
Q psy2859         204 -------IIQGDKPCDLVELFVRKI  221 (534)
Q Consensus       204 -------~l~~~~~~~~~~~~l~k~  221 (534)
                             +....+..++..+.+...
T Consensus       243 ~g~tpL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          243 EHTVPLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             TSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHhChHHHHHHHHHcC
Confidence                   233345556666666653

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=3.6e-25  Score=209.99  Aligned_cols=177  Identities=20%  Similarity=0.227  Sum_probs=147.0

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++++.|+..|+.+.++.|+.. |++++..+..|.||||+|+..|+.+++++|+++|++++...+..|.||||+|+..|
T Consensus         9 ~~~~l~~A~~~g~~~~~~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~   87 (240)
T 3eu9_A            9 STWDIVKATQYGIYERCRELVEA-GYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG   87 (240)
T ss_dssp             GGCCHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred             cchHHHHHHHcCChHHHHHHHHc-CCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence            45678888888888888776665 99999999999999999999999999999999999998756667999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcC-ch
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVN-IH  164 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~-~~  164 (534)
                      +.+++++|++.|++++..+..|.||||+|+..++.+++++|++.|++++..          +..|.||||+|+..++ .+
T Consensus        88 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~  157 (240)
T 3eu9_A           88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM----------DQNGMTPLMWAAYRTHSVD  157 (240)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------CTTSCCHHHHHHHHCCSST
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcccc----------CCCCCcHHHHHHHhCChHH
Confidence            999999999999999999999999999999999999999999999987543          5556677777775554 56


Q ss_pred             HHHHHHhh-------------CCcccccccchHHHHHHHHHh
Q psy2859         165 PVRVALNL-------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       165 ~v~~Ll~~-------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      ++++|++.             +|++.+...+..++++.|.+.
T Consensus       158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (240)
T 3eu9_A          158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA  199 (240)
T ss_dssp             THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            66666643             355556666666666666554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.93  E-value=8.6e-26  Score=220.08  Aligned_cols=155  Identities=19%  Similarity=0.178  Sum_probs=137.4

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCC-CCccCCCCCCcHHHHHH-----HcCCHHHHHHHHHCCCCCCCCCCCCCchHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKL-RVDLYDEHGMTPLQHAA-----YKGNKQICQLLLDHGADVNSGRHEHGYSALH   79 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~-~~n~~d~~g~TpLh~Aa-----~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh   79 (534)
                      +.++|+.|+..|+.+.|..||.. |+ ++|..|..|+||||+|+     ..++.+++++|++.|++++. .+..|.||||
T Consensus       111 g~T~Lh~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~-~~~~g~tpLh  188 (276)
T 4hbd_A          111 GNTALHYSVSHANFPVVQQLLDS-GVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAK-ASQAGQTALM  188 (276)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHT-SCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCC-CTTTCCCHHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHC-CCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccc-cCCCCCCHHH
Confidence            34666666667776666655555 76 99999999999999999     66889999999999998888 8889999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhh-cCCceeeccCCCCCCCCCCCCCCchHHHHH
Q psy2859          80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAK-SEVDYYIVPRGLETTPKLDPILAEPLHTFI  158 (534)
Q Consensus        80 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  158 (534)
                      +|+..|+.++|++|+++|+++|.+|..|+||||+|+..|+.+++++|+. .|++++.          .|..|.||||+|+
T Consensus       189 ~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~----------~d~~g~TpL~~A~  258 (276)
T 4hbd_A          189 LAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL----------TDRDGSTALMVAL  258 (276)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTC----------CCTTSCCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcC----------cCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999 8999743          4778999999999


Q ss_pred             HhcCchHHHHHHhh
Q psy2859         159 MQVNIHPVRVALNL  172 (534)
Q Consensus       159 ~~~~~~~v~~Ll~~  172 (534)
                      ..|+.+++++|+++
T Consensus       259 ~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          259 DAGQSEIASMLYSR  272 (276)
T ss_dssp             HHTCHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHhc
Confidence            99999999999986

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.93  E-value=5.3e-26  Score=215.99  Aligned_cols=156  Identities=19%  Similarity=0.153  Sum_probs=138.4

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC------CCCCCCCCchHHHH
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV------NSGRHEHGYSALHF   80 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~v------n~~~~~~G~TpLh~   80 (534)
                      .++|+.|+..|+.+ +.++|.+.|++++.+|..|+||||+|+..|+.+++++|+++|+++      +. .+..|.||||+
T Consensus        46 ~t~L~~A~~~~~~~-~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~t~L~~  123 (236)
T 1ikn_D           46 QTPLHLAVITNQPE-IAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA-TNYNGHTCLHL  123 (236)
T ss_dssp             CCHHHHHHHTTCHH-HHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC-CCTTCCCHHHH
T ss_pred             CCHHHHHHHcCCHH-HHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhc-cCCCCCCHHHH
Confidence            35556666666655 455556679999999999999999999999999999999999863      44 67889999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCCCC-CCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHH
Q psy2859          81 AALSGKDDVCACLLSAGAKSYATNS-VGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIM  159 (534)
Q Consensus        81 A~~~g~~~iv~~Ll~~ga~~~~~~~-~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  159 (534)
                      |+..|+.++|++|+++|++++.++. .|.||||+|+..++.+++++|++.|++++.          .+..|.||||+|+.
T Consensus       124 A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~tpl~~A~~  193 (236)
T 1ikn_D          124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR----------VTYQGYSPYQLTWG  193 (236)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCC----------CCTTCCCGGGGCTT
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc----------ccCCCCCHHHHHHc
Confidence            9999999999999999999999998 999999999999999999999999999854          47789999999999


Q ss_pred             hcCchHHHHHHhhCC
Q psy2859         160 QVNIHPVRVALNLLP  174 (534)
Q Consensus       160 ~~~~~~v~~Ll~~~p  174 (534)
                      .++.+++++|+++..
T Consensus       194 ~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          194 RPSTRIQQQLGQLTL  208 (236)
T ss_dssp             SSCHHHHHHHHTTSC
T ss_pred             cCchHHHHHHHHcch
Confidence            999999999999843

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=1.4e-25  Score=218.36  Aligned_cols=185  Identities=24%  Similarity=0.290  Sum_probs=156.2

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLY-DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .++|+.|+..|+.+.|+.||.. |+++|.. +..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            6 NHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHT
T ss_pred             chHHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcC
Confidence            4567777788888777766655 9999988 78899999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++..+..|.||||+|+..++.+++++|++.|++++............+..|.||||+|+..|+.++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999865422111111126679999999999999999


Q ss_pred             HHHHHhh-------------CCcccccccch----HHHHHHHHHh
Q psy2859         166 VRVALNL-------------LPSLISHLPSV----RKVVSLLSEK  193 (534)
Q Consensus       166 v~~Ll~~-------------~p~~~~~~~~~----~~~~~~l~~~  193 (534)
                      +++|++.             +|++.+...+.    ..+++.|.+.
T Consensus       164 v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~  208 (285)
T 1wdy_A          164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH  208 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHc
Confidence            9999975             44555555555    6777777653

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=6.7e-26  Score=196.12  Aligned_cols=131  Identities=18%  Similarity=0.134  Sum_probs=124.1

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCC-CC
Q psy2859          30 KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSV-GR  108 (534)
Q Consensus        30 g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~-G~  108 (534)
                      ++++|..|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+. |+.+++++|+++|++++.+|.. |.
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            678999999999999999999999999999999999999 89999999999999 9999999999999999999999 99


Q ss_pred             CHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         109 TASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       109 TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ||||+|+..++.+++++|++.|++++.          .+..|.||||+|+..++.+++++|+++
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARLDV----------CDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCCCC----------CSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCc----------cCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            999999999999999999999999744          477899999999999999999999875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=5.3e-26  Score=219.23  Aligned_cols=163  Identities=18%  Similarity=0.139  Sum_probs=134.5

Q ss_pred             CCchh-HHHHH---HhCCHHHHHHHHHhCC-----------CCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC
Q psy2859           5 MEGNE-IFDFI---SKNDIDNVQKLLSEHK-----------LRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG   69 (534)
Q Consensus         5 ~~~~~-l~~aa---~~g~~~~v~~lL~~~g-----------~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~   69 (534)
                      ..|.+ ||.|+   ..|+.+.+..||.. |           .+++..|..|+||||+|+..|+.++|++||++|++++. 
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~-g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-  121 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDI-AEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHA-  121 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHH-HHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTC-
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHh-cccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCc-
Confidence            34544 44455   34666666655554 5           33455566899999999999999999999999999998 


Q ss_pred             CC--------------CCCchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCCHHHHHHHhcH---------HHHH
Q psy2859          70 RH--------------EHGYSALHFAALSGKDDVCACLLS---AGAKSYATNSVGRTASQMAAFVVV---------AVIN  123 (534)
Q Consensus        70 ~~--------------~~G~TpLh~A~~~g~~~iv~~Ll~---~ga~~~~~~~~G~TpL~~A~~~~~---------~~i~  123 (534)
                      .+              ..|.||||+|+..|+.++|++|++   .|++++.+|..|+||||+|+..+.         .+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v  201 (260)
T 3jxi_A          122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY  201 (260)
T ss_dssp             CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHH
T ss_pred             cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHH
Confidence            66              689999999999999999999999   999999999999999999997655         6899


Q ss_pred             HHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         124 NYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       124 ~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ++|++.|++++....   .....+..|.||||+|+..|+.++|++|+++
T Consensus       202 ~~Ll~~ga~~~~~~~---~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  247 (260)
T 3jxi_A          202 DLLLIKCAKLFPDTN---LEALLNNDGLSPLMMAAKTGKIGIFQHIIRR  247 (260)
T ss_dssp             HHHHHHHHHHCTTCC---GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHhCcccccccc---hhhcccCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999843111   0023577899999999999999999999987

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=5.2e-26  Score=221.11  Aligned_cols=181  Identities=22%  Similarity=0.286  Sum_probs=157.5

Q ss_pred             CchhHHHHHHhCCHHHHHHHHH---hCCCCCc----cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCC-------CC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLS---EHKLRVD----LYDEHGMTPLQHAAYK---GNKQICQLLLDHGADV-------NS   68 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~---~~g~~~n----~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~v-------n~   68 (534)
                      +.++|+.||..|+.+.|+.||.   +.+.+++    ..|..|+||||+|+..   |+.++|++||++|+++       |.
T Consensus        13 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~   92 (273)
T 2pnn_A           13 DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNA   92 (273)
T ss_dssp             CHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTC
T ss_pred             cchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhc
Confidence            4577888889999998888876   4688876    4588999999999987   9999999999998753       22


Q ss_pred             C---CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCC--------------CCCCHHHHHHHhcHHHHHHHHhh---
Q psy2859          69 G---RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNS--------------VGRTASQMAAFVVVAVINNYIAK---  128 (534)
Q Consensus        69 ~---~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~--------------~G~TpL~~A~~~~~~~i~~~L~~---  128 (534)
                      .   .|..|.||||+|+..|+.++|++|+++|++++..+.              .|.||||+|+..|+.+++++|++   
T Consensus        93 ~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (273)
T 2pnn_A           93 SYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW  172 (273)
T ss_dssp             CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             ccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            1   456899999999999999999999999999999987              79999999999999999999999   


Q ss_pred             cCCceeeccCCCCCCCCCCCCCCchHHHHHHhcC---------chHHHHHHhh-------------------CCcccccc
Q psy2859         129 SEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVN---------IHPVRVALNL-------------------LPSLISHL  180 (534)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~-------------------~p~~~~~~  180 (534)
                      .|++++.          .|..|.||||+|+..|+         .+++++|++.                   +|++++..
T Consensus       173 ~gad~~~----------~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~  242 (273)
T 2pnn_A          173 QPADISA----------RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAAS  242 (273)
T ss_dssp             CCCCTTC----------CCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CCCCcee----------eCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHH
Confidence            8999853          47789999999999998         7899999863                   67888888


Q ss_pred             cchHHHHHHHHHhhhh
Q psy2859         181 PSVRKVVSLLSEKQMK  196 (534)
Q Consensus       181 ~~~~~~~~~l~~~~~~  196 (534)
                      .+..+++++|++.+.+
T Consensus       243 ~g~~~iv~~Ll~~ga~  258 (273)
T 2pnn_A          243 SGKIGVLAYILQREIH  258 (273)
T ss_dssp             TTCHHHHHHHHHHHTC
T ss_pred             hChHHHHHHHHHCCCC
Confidence            9999999999887764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=3.6e-25  Score=230.09  Aligned_cols=176  Identities=20%  Similarity=0.188  Sum_probs=158.9

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.||..|+.+.|+.||.. |+++|..|..|.||||+|+..|+.++|++|+++|+++|. .+..|.||||+|+..|
T Consensus        14 g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           14 GLTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQTPLHCAARIG   91 (437)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTSCCHHHHHHHHT
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-CCCCCCCHHHHHHHCC
Confidence            44677778888888877777765 999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.++|++|+++|++++..+..|.||||+|+..|+.+++++|+..+++.+          ..+..|.||||+|+..|+.++
T Consensus        92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~----------~~~~~g~t~L~~A~~~g~~~~  161 (437)
T 1n11_A           92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA----------CMTKKGFTPLHVAAKYGKVRV  161 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC----------CCCTTSCCHHHHHHHTTCHHH
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc----------CCCCCCCCHHHHHHHcCCHHH
Confidence            9999999999999999999999999999999999999999999998863          346679999999999999999


Q ss_pred             HHHHHhh------------CCcccccccchHHHHHHHHHh
Q psy2859         166 VRVALNL------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       166 v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      +++|++.            +|++.+...+...+++.|.+.
T Consensus       162 v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  201 (437)
T 1n11_A          162 AELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR  201 (437)
T ss_dssp             HHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG
T ss_pred             HHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            9999976            567788888888999999654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=7.8e-26  Score=230.22  Aligned_cols=185  Identities=17%  Similarity=0.126  Sum_probs=161.8

Q ss_pred             CchhHHHHHHhCCHHHHHHHH-------HhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLL-------SEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSAL   78 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL-------~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpL   78 (534)
                      +.++||.||..|+.+.+..||       .+.|+++|..|..|+||||+|+..|+.++|++|+++|++++. .+..|.|||
T Consensus       125 g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~-~~~~g~t~L  203 (373)
T 2fo1_E          125 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSAL  203 (373)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHH
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc-cCCCCCCHH
Confidence            446677777777776665554       478999999999999999999999999999999999999999 899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcC---CCCCCCCCCCCCHHHHHHHhc---HHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCc
Q psy2859          79 HFAALSGKDDVCACLLSAG---AKSYATNSVGRTASQMAAFVV---VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAE  152 (534)
Q Consensus        79 h~A~~~g~~~iv~~Ll~~g---a~~~~~~~~G~TpL~~A~~~~---~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t  152 (534)
                      |+|+..|+.++|++|++.|   ++++..|..|.||||+|+..+   ..+++++|++.|++++.....  .....+..|.|
T Consensus       204 ~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~--~~~~~d~~g~t  281 (373)
T 2fo1_E          204 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA--RKDSEKYKGRT  281 (373)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGG--GTSSSSCCCCC
T ss_pred             HHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccccccc--ccCcccccCCC
Confidence            9999999999999999998   899999999999999999997   999999999999998753211  11234668999


Q ss_pred             hHHHHHHhcCchHHHHHHhh-------------CCcccccccchHHHHHHHHHh
Q psy2859         153 PLHTFIMQVNIHPVRVALNL-------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       153 ~L~~A~~~~~~~~v~~Ll~~-------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      |||+|+..|+.++|++|++.             +|++++...+..++++.|.+.
T Consensus       282 ~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  335 (373)
T 2fo1_E          282 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ  335 (373)
T ss_dssp             THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999964             678889999999999999764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=7.1e-26  Score=218.34  Aligned_cols=180  Identities=21%  Similarity=0.251  Sum_probs=155.1

Q ss_pred             CchhHHHHHHhCCHHHHHHHHH---hCCCCCccCC----CCCCcHHHHHH---HcCCHHHHHHHHHCCCC----------
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLS---EHKLRVDLYD----EHGMTPLQHAA---YKGNKQICQLLLDHGAD----------   65 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~---~~g~~~n~~d----~~g~TpLh~Aa---~~g~~~iv~~Ll~~ga~----------   65 (534)
                      +.++||.||..|+.+.+..+|.   +.|++++..+    ..|+||||+|+   ..|+.++|++|++.|++          
T Consensus         5 ~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~   84 (260)
T 3jxi_A            5 NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINS   84 (260)
T ss_dssp             CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTC
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcc
Confidence            5578999999999998666655   5699998765    77999999999   67999999999998855          


Q ss_pred             -CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC--------------CCCCCHHHHHHHhcHHHHHHHHhh--
Q psy2859          66 -VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATN--------------SVGRTASQMAAFVVVAVINNYIAK--  128 (534)
Q Consensus        66 -vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~--------------~~G~TpL~~A~~~~~~~i~~~L~~--  128 (534)
                       ++. .|..|.||||+|+..|+.++|++|+++|++++..+              ..|.||||+|+..|+.+++++|++  
T Consensus        85 ~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~  163 (260)
T 3jxi_A           85 PFRD-VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENG  163 (260)
T ss_dssp             CBCC-SSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred             cccc-cccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence             333 45589999999999999999999999999999998              689999999999999999999999  


Q ss_pred             -cCCceeeccCCCCCCCCCCCCCCchHHHHHHhcC---------chHHHHHHhh-------------------CCccccc
Q psy2859         129 -SEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVN---------IHPVRVALNL-------------------LPSLISH  179 (534)
Q Consensus       129 -~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~-------------------~p~~~~~  179 (534)
                       .|++++.          .|..|.||||+|+..++         .+++++|++.                   +|++++.
T Consensus       164 ~~ga~~~~----------~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~  233 (260)
T 3jxi_A          164 HKQADLRR----------QDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA  233 (260)
T ss_dssp             SCCCCTTC----------CCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHH
T ss_pred             ccCCCCcc----------cCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHH
Confidence             8999843          47789999999999888         6899999855                   5677788


Q ss_pred             ccchHHHHHHHHHhhhh
Q psy2859         180 LPSVRKVVSLLSEKQMK  196 (534)
Q Consensus       180 ~~~~~~~~~~l~~~~~~  196 (534)
                      ..+..++++.|++++..
T Consensus       234 ~~g~~~~v~~Ll~~g~~  250 (260)
T 3jxi_A          234 KTGKIGIFQHIIRREIA  250 (260)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHhCCC
Confidence            88888888888776643

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=7.9e-26  Score=219.82  Aligned_cols=164  Identities=22%  Similarity=0.184  Sum_probs=135.0

Q ss_pred             CCCchh-HHHHHHh---CCHHHHHHHHHhCCCC-------Cc----cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCC
Q psy2859           4 PMEGNE-IFDFISK---NDIDNVQKLLSEHKLR-------VD----LYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNS   68 (534)
Q Consensus         4 ~~~~~~-l~~aa~~---g~~~~v~~lL~~~g~~-------~n----~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~   68 (534)
                      +..|.+ ||.|+..   |+.+.|..||.. |++       +|    ..|..|+||||+|+..|+.++|++||++|++++.
T Consensus        51 ~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~-ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           51 PETGKTCLLKAMLNLHNGQNDTIALLLDV-ARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             TTTCCCHHHHHHHSCBTTBCHHHHHHHHH-HHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CcCCCCHHHHHHHHHhcCChHHHHHHHHh-hccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            445544 5555543   666666555554 644       22    2567899999999999999999999999999998


Q ss_pred             CCCC--------------CCchHHHHHHHcCCHHHHHHHHh---cCCCCCCCCCCCCCHHHHHHHhcH---------HHH
Q psy2859          69 GRHE--------------HGYSALHFAALSGKDDVCACLLS---AGAKSYATNSVGRTASQMAAFVVV---------AVI  122 (534)
Q Consensus        69 ~~~~--------------~G~TpLh~A~~~g~~~iv~~Ll~---~ga~~~~~~~~G~TpL~~A~~~~~---------~~i  122 (534)
                       .+.              .|.||||+|+..|+.++|++|++   .|++++.+|..|+||||+|+..++         .++
T Consensus       130 -~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~  208 (273)
T 2pnn_A          130 -AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM  208 (273)
T ss_dssp             -CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHH
T ss_pred             -cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHH
Confidence             665              79999999999999999999999   999999999999999999999866         789


Q ss_pred             HHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         123 NNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       123 ~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +++|+..|++++.....   ....|..|.||||+|+..|+.++|++|+++
T Consensus       209 v~~Ll~~ga~~n~~~~~---~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  255 (273)
T 2pnn_A          209 YNEILILGAKLHPTLKL---EEITNRKGLTPLALAASSGKIGVLAYILQR  255 (273)
T ss_dssp             HHHHHHHHHHHCTTCCG---GGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhhhhccccccc---ccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence            99999999998531100   023577899999999999999999999987

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=6.5e-25  Score=213.71  Aligned_cols=173  Identities=23%  Similarity=0.217  Sum_probs=123.8

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD   87 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~   87 (534)
                      ++|+.|+..|+.+.+.. |.+.|++++..|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.
T Consensus        41 t~L~~A~~~g~~~~v~~-Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~  118 (285)
T 1wdy_A           41 TPLHNAVQMSREDIVEL-LLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-CDFYGFTAFMEAAVYGKV  118 (285)
T ss_dssp             CHHHHHHHTTCHHHHHH-HHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-BCTTCCBHHHHHHHTTCH
T ss_pred             cHHHHHHHcCCHHHHHH-HHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCcccCCHHHHHHHhCCH
Confidence            45555555665555544 4455888888888899999999999999999999999988888 788888888888888888


Q ss_pred             HHHHHHHhcCCCCCCC----------CCCCCCHHHHHHHhcHHHHHHHHhhc-CCceeeccCCCCCCCCCCCCCCchHHH
Q psy2859          88 DVCACLLSAGAKSYAT----------NSVGRTASQMAAFVVVAVINNYIAKS-EVDYYIVPRGLETTPKLDPILAEPLHT  156 (534)
Q Consensus        88 ~iv~~Ll~~ga~~~~~----------~~~G~TpL~~A~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~~~~~~~g~t~L~~  156 (534)
                      +++++|+++|++++..          +..|.||||+|+..++.+++++|++. |++++..          +..|.||||.
T Consensus       119 ~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~----------~~~g~t~l~~  188 (285)
T 1wdy_A          119 KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC----------DNMGRNALIH  188 (285)
T ss_dssp             HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCC----------CTTSCCHHHH
T ss_pred             HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCcc----------CCCCCCHHHH
Confidence            8888888888888776          67788888888888888888888876 7776443          3344555555


Q ss_pred             HHHhcC----chHHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         157 FIMQVN----IHPVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       157 A~~~~~----~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      |+..++    .+++++|++.            +|++.+...+...+++.|.+
T Consensus       189 a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  240 (285)
T 1wdy_A          189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE  240 (285)
T ss_dssp             HHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHh
Confidence            555544    4444444433            34444444444444444443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=1.2e-25  Score=220.01  Aligned_cols=179  Identities=14%  Similarity=0.133  Sum_probs=153.0

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-chHHHHHHHc
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG-YSALHFAALS   84 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G-~TpLh~A~~~   84 (534)
                      +.++|+.|+..|+.+.+. +|.++|+++|.+|..|+||||+|+..|+.++|++|+++|++++. .+..| .||||+|+..
T Consensus        62 g~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~~t~L~~A~~~  139 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVK-ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF-YGKTGWKTSFYHAVML  139 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG-CSSSGGGSHHHHHHHT
T ss_pred             CCCHHHHHHHcCCHHHHH-HHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc-cCCCCCCCHHHHHHHc
Confidence            345666666666666555 55556999999999999999999999999999999999999998 88888 7999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCch-HHHHHHhcCc
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEP-LHTFIMQVNI  163 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~-L~~A~~~~~~  163 (534)
                      |+.+++++|+++|+++... ..|.||||+|+..|+.+++++|++.|++++.          .+..|.|| ||+|+..++.
T Consensus       140 ~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~----------~~~~g~t~~L~~A~~~~~~  208 (285)
T 3kea_A          140 NDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNT----------NNSLLFIPDIKLAIDNKDI  208 (285)
T ss_dssp             TCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCT----------TCCCBCCTTHHHHHHHTCH
T ss_pred             CCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCc----------ccCCCCChHHHHHHHcCCH
Confidence            9999999999999887333 2899999999999999999999999999843          47789997 9999999999


Q ss_pred             hHHHHHHhh-----CCcccccccchHHHHHHHHHhhhhc
Q psy2859         164 HPVRVALNL-----LPSLISHLPSVRKVVSLLSEKQMKA  197 (534)
Q Consensus       164 ~~v~~Ll~~-----~p~~~~~~~~~~~~~~~l~~~~~~~  197 (534)
                      +++++|+++     .....+...+..+++++|.+.+...
T Consensus       209 ~~v~~Ll~~gad~~~~~~~a~~~~~~~iv~~Ll~~g~~~  247 (285)
T 3kea_A          209 EMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEY  247 (285)
T ss_dssp             HHHHHHTTSCBCSTTTTGGGGTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCChhhhhcCCHHHHHHHHHcCCCC
Confidence            999999998     2234566777888999998877644

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=1.1e-24  Score=218.97  Aligned_cols=176  Identities=24%  Similarity=0.267  Sum_probs=154.5

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++||.||..|+.+.|+.|| +.|+++|..|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+
T Consensus        59 ~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~  136 (351)
T 3utm_A           59 STPLHLAAGYNRVRIVQLLL-QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA-MDLWQFTPLHEAASKNR  136 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHH-HcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCC
Confidence            45666666666666555555 55999999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCC------------------------------------------------------CCCCCHHH
Q psy2859          87 DDVCACLLSAGAKSYATN------------------------------------------------------SVGRTASQ  112 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~------------------------------------------------------~~G~TpL~  112 (534)
                      .+++++|+++|++++..+                                                      ..|.||||
T Consensus       137 ~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~  216 (351)
T 3utm_A          137 VEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH  216 (351)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH
T ss_pred             HHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH
Confidence            999999999999987654                                                      45678999


Q ss_pred             HHHHh---cHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCccc
Q psy2859         113 MAAFV---VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLI  177 (534)
Q Consensus       113 ~A~~~---~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~  177 (534)
                      +|+..   +..+++++|+..|++++.          .+..|.||||+|+..|+.+++++|++.            +|++.
T Consensus       217 ~A~~~~~~~~~~~~~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~  286 (351)
T 3utm_A          217 CAVASLHPKRKQVAELLLRKGANVNE----------KNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR  286 (351)
T ss_dssp             HHHHCCSTTHHHHHHHHHHTTCCTTC----------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHhCccHHHHHHHHHHcCCCcCC----------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            99988   778999999999999743          467899999999999999999999975            78999


Q ss_pred             ccccchHHHHHHHHHhh
Q psy2859         178 SHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       178 ~~~~~~~~~~~~l~~~~  194 (534)
                      +...+...++++|.+.+
T Consensus       287 A~~~~~~~~v~~Ll~~g  303 (351)
T 3utm_A          287 AALAGHLQTCRLLLSYG  303 (351)
T ss_dssp             HHHHTCHHHHHHHHHTT
T ss_pred             HHHcCcHHHHHHHHHcC
Confidence            99999999999997654

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=2.1e-25  Score=227.03  Aligned_cols=176  Identities=18%  Similarity=0.180  Sum_probs=154.2

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCCCCCCCCCCchHHHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG---ADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~g---a~vn~~~~~~G~TpLh~A~   82 (534)
                      +.++|+.|+..|+.+.|. +|+++|++++..|..|.||||+|+..|+.+++++|+++|   ++++. .+..|.||||+|+
T Consensus       166 g~TpL~~A~~~g~~~iv~-~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~L~~A~  243 (373)
T 2fo1_E          166 ENTPLMLAVLARRRRLVA-YLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVA  243 (373)
T ss_dssp             SCCHHHHHHHHTCHHHHH-HHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcChHHHHH-HHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh-cCCCCCCHHHHHH
Confidence            345666666677666555 555569999999999999999999999999999999998   89998 8999999999999


Q ss_pred             HcC---CHHHHHHHHhcCCCCCC--------CCCCCCCHHHHHHHhcHHHHHHHHhhcC-CceeeccCCCCCCCCCCCCC
Q psy2859          83 LSG---KDDVCACLLSAGAKSYA--------TNSVGRTASQMAAFVVVAVINNYIAKSE-VDYYIVPRGLETTPKLDPIL  150 (534)
Q Consensus        83 ~~g---~~~iv~~Ll~~ga~~~~--------~~~~G~TpL~~A~~~~~~~i~~~L~~~~-~~~~~~~~~~~~~~~~~~~g  150 (534)
                      ..|   +.+++++|+++|++++.        .|..|.||||+|+..|+.+++++|+..+ ++++          ..|..|
T Consensus       244 ~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n----------~~d~~g  313 (373)
T 2fo1_E          244 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD----------KQDEDG  313 (373)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT----------CCCTTC
T ss_pred             HhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc----------CcCCCC
Confidence            998   89999999999999886        5779999999999999999999999876 8874          347789


Q ss_pred             CchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHHh
Q psy2859         151 AEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       151 ~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      .||||+|+..|+.++|++|+++            +|++++...+..+++++|.+.
T Consensus       314 ~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999999999999999987            577888888888999988653

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.92  E-value=4.2e-25  Score=223.97  Aligned_cols=126  Identities=13%  Similarity=0.100  Sum_probs=64.5

Q ss_pred             CCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCC-----CCCCCCCCC
Q psy2859          36 YDEHGMTPLQHAAYKG--NKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK-----SYATNSVGR  108 (534)
Q Consensus        36 ~d~~g~TpLh~Aa~~g--~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~-----~~~~~~~G~  108 (534)
                      .|..|.||||+|+..|  +.++|++|+++|++++. .+..|.||||+|+..|+.++|++|+++|++     ++..|..|.
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            4444555555555555  55555555555555554 455555555555555555555555555544     555555555


Q ss_pred             CHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         109 TASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       109 TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ||||+|+..|+.+++++|++.|++++.          .|..|.||||+|+..|+.++|++|++.
T Consensus       213 t~L~~A~~~g~~~~v~~Ll~~gad~~~----------~d~~g~tpL~~A~~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          213 SHLHWAILINWEDVAMRFVEMGIDVNM----------EDNEHTVPLYLSVRAAMVLLTKELLQK  266 (364)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTTCCTTC----------CCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence            555555555555555555555555422          234455555555555555555555543

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.92  E-value=3.4e-25  Score=203.46  Aligned_cols=151  Identities=16%  Similarity=0.159  Sum_probs=138.5

Q ss_pred             CCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy2859          32 RVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTAS  111 (534)
Q Consensus        32 ~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL  111 (534)
                      .+|.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++..|..|.|||
T Consensus        27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  105 (192)
T 2rfm_A           27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPL  105 (192)
T ss_dssp             HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHH
T ss_pred             HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccc-ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            4577899999999999999999999999999999998 899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCccccc
Q psy2859         112 QMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISH  179 (534)
Q Consensus       112 ~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~  179 (534)
                      |+|+..++.+++++|++.|++++.          .+..|.||||+|+..|+.+++++|++.            +|++++.
T Consensus       106 ~~A~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~  175 (192)
T 2rfm_A          106 MWSIIFGYSEMSYFLLEHGANVND----------RNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASAR  175 (192)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCSSC----------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            999999999999999999999853          477899999999999999999999986            5666777


Q ss_pred             ccchHHHHHHHHHh
Q psy2859         180 LPSVRKVVSLLSEK  193 (534)
Q Consensus       180 ~~~~~~~~~~l~~~  193 (534)
                      ..+..++++.|.+.
T Consensus       176 ~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          176 IFGRQEVIKIFTEV  189 (192)
T ss_dssp             HTTCHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHhc
Confidence            77777888877653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.92  E-value=1.5e-26  Score=218.87  Aligned_cols=160  Identities=25%  Similarity=0.265  Sum_probs=141.0

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD   87 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~   87 (534)
                      ++|+.|+..|+.+.|+.||.. |+++|.+|..|+||||+|+..|+.++|++|+++|+++|. .|..|+||||+|+..|+.
T Consensus        23 t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~-~d~~g~tpLh~A~~~g~~  100 (229)
T 2vge_A           23 VLLLDAALTGELEVVQQAVKE-MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS-PDSHGWTPLHCAASCNDT  100 (229)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHH-SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCH
Confidence            557778888888888877765 999999999999999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCC-CCCCCHHHHH--HHhcHHHHHHHHhhcCCceeeccCCCC-------------------C---
Q psy2859          88 DVCACLLSAGAKSYATN-SVGRTASQMA--AFVVVAVINNYIAKSEVDYYIVPRGLE-------------------T---  142 (534)
Q Consensus        88 ~iv~~Ll~~ga~~~~~~-~~G~TpL~~A--~~~~~~~i~~~L~~~~~~~~~~~~~~~-------------------~---  142 (534)
                      ++|++|+++|++++..+ ..|+||||+|  +..++.+++++|++.|++++..+.+..                   .   
T Consensus       101 ~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~~ll~~ga~~~  180 (229)
T 2vge_A          101 VICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREGESVT  180 (229)
T ss_dssp             HHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTBCCBCTTCEEE
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccccCcccccccc
Confidence            99999999999999986 6999999999  899999999999999988766543210                   0   


Q ss_pred             CCCCCCCCCchHHHHHHhcCchHHHHH
Q psy2859         143 TPKLDPILAEPLHTFIMQVNIHPVRVA  169 (534)
Q Consensus       143 ~~~~~~~g~t~L~~A~~~~~~~~v~~L  169 (534)
                      ....|..|.||||+|+..|+.++|+.+
T Consensus       181 ~~~~d~~G~TpL~~A~~~g~~~~v~~~  207 (229)
T 2vge_A          181 VLRRDGPEETDWWWAALHGQEGYVPRN  207 (229)
T ss_dssp             EEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred             ccccCCCcccHHHHHHHcCCcceeehh
Confidence            122466799999999999999998764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.92  E-value=1.9e-24  Score=224.55  Aligned_cols=182  Identities=23%  Similarity=0.238  Sum_probs=96.1

Q ss_pred             hHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHH
Q psy2859           9 EIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDD   88 (534)
Q Consensus         9 ~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~   88 (534)
                      +++.|+..|+.+.+. +|.++|+++|..+..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+
T Consensus       149 ~L~~A~~~g~~~~v~-~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~  226 (437)
T 1n11_A          149 PLHVAAKYGKVRVAE-LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS-PAWNGYTPLHIAAKQNQVE  226 (437)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCC-CCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHH-HHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHcCCHH
Confidence            334444444433333 33333555555555555555555555555555555555555555 4555555555555555555


Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCC-----------------------CCCC
Q psy2859          89 VCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLE-----------------------TTPK  145 (534)
Q Consensus        89 iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~-----------------------~~~~  145 (534)
                      ++++|++.|++++..+..|.||||+|+..|+.+++++|+..+++++..+....                       ..+.
T Consensus       227 ~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  306 (437)
T 1n11_A          227 VARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA  306 (437)
T ss_dssp             HHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCC
Confidence            55555555555555555555555555555555555555555554432211000                       0022


Q ss_pred             CCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         146 LDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       146 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      .+..|.||||+|+..|+.++|++|++.            +|++.+...+..+++++|.+
T Consensus       307 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~  365 (437)
T 1n11_A          307 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK  365 (437)
T ss_dssp             CCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence            345566666666666666666666654            45566666666666666644

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.92  E-value=1.8e-25  Score=212.93  Aligned_cols=155  Identities=15%  Similarity=0.182  Sum_probs=115.1

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .|.++++.|...+...+.+.|+++|++++. +..|.||||+|+..|+.++|++||+.|+++|. .|..|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAG   81 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcC
Confidence            344444444444544455555566999986 47899999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCC-chHHHH--HHhcC
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILA-EPLHTF--IMQVN  162 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~-t~L~~A--~~~~~  162 (534)
                      +.++|++|+++|+++|.+|..|+||||+|+..++.+++++|+++|++++..          +..|. ||||+|  +..|+
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~----------~~~~~~t~l~~a~~~~~g~  151 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM----------TYSDMQTAADKCEEMEEGY  151 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC----------CSSSCCCHHHHCCSSSTTC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccee----------cCCCCcchHHHHHHhhhcc
Confidence            999999999999999999999999999999999999999999999998543          44554 999999  78899


Q ss_pred             chHHHHHHhh
Q psy2859         163 IHPVRVALNL  172 (534)
Q Consensus       163 ~~~v~~Ll~~  172 (534)
                      .+++++|++.
T Consensus       152 ~~~~~~Ll~~  161 (239)
T 1ycs_B          152 TQCSQFLYGV  161 (239)
T ss_dssp             CCHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999999987

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=2.1e-24  Score=216.34  Aligned_cols=175  Identities=20%  Similarity=0.189  Sum_probs=136.6

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccC----------CCCCCcHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCch
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLY----------DEHGMTPLQHAAYKGNKQICQLLLD-HGADVNSGRHEHGYS   76 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~----------d~~g~TpLh~Aa~~g~~~iv~~Ll~-~ga~vn~~~~~~G~T   76 (534)
                      ++++.|+..|+.+.+. +|.++|++++..          +..|.||||+|+..|+.++|++||+ .|+++|. .+..|.|
T Consensus       127 t~l~~A~~~~~~~~~~-~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~-~d~~g~t  204 (337)
T 4g8k_A          127 TAFMEAAVYGKVKALK-FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMGRN  204 (337)
T ss_dssp             BHHHHHHHTTCHHHHH-HHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC-CCTTSCC
T ss_pred             CHHHHHHHcCcHHHHH-HHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc-cCCCCCc
Confidence            4455555555555544 444558887653          3458899999999999999999885 5899988 7888999


Q ss_pred             HHHHHHHcCC----HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhc-CCceeeccCCCCCCCCCCCCCC
Q psy2859          77 ALHFAALSGK----DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKS-EVDYYIVPRGLETTPKLDPILA  151 (534)
Q Consensus        77 pLh~A~~~g~----~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~-~~~~~~~~~~~~~~~~~~~~g~  151 (534)
                      |||.++..+.    ..++++|+++|+++|.+|..|+||||+|+..+..+++++|+.. +++++.          .|..|.
T Consensus       205 ~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~----------~d~~G~  274 (337)
T 4g8k_A          205 ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND----------TDSDGK  274 (337)
T ss_dssp             HHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTC----------BCTTSC
T ss_pred             HHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccC----------cCCCCC
Confidence            9888876554    3578888899999998888999999999998888888888764 677643          467899


Q ss_pred             chHHHHHHhcCchHHHHHHhh-------CCcccccccchHHHHHHHHHhh
Q psy2859         152 EPLHTFIMQVNIHPVRVALNL-------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       152 t~L~~A~~~~~~~~v~~Ll~~-------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                      ||||+|+..|+.++|++|+++       +|++.+...+..+++++|++.+
T Consensus       275 TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~~L~~A~~~~~~~iv~~Ll~~G  324 (337)
T 4g8k_A          275 TALLLAVELKLKKIAELLCKRGASTDCGDLVMTARRNYDHSLVKVLLSHG  324 (337)
T ss_dssp             BHHHHHHHTTCHHHHHHHHTTSCSSTTCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCCCHHHHHHHcCCHHHHHHHHHCc
Confidence            999999999999999999987       5777788888888888886543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=2.4e-24  Score=215.99  Aligned_cols=164  Identities=25%  Similarity=0.305  Sum_probs=146.2

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCC-CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDE-HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~-~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .++|+.||..|+.+.|+.||.. |+++|.++. .|+||||+|+..|+.++|++||++|++++. .+..+.+|++.++..+
T Consensus        26 ~t~L~~Av~~g~~~~V~~LL~~-Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~-~~~~~~~~~~~~~~~~  103 (337)
T 4g8k_A           26 NHLLIKAVQNEDVDLVQQLLEG-GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFILAAIAG  103 (337)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHT
T ss_pred             ChHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh-hccCCCchhHHHHhcc
Confidence            4567788888888888777765 999999875 599999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      ...++..++..+++++..|..|.||||+|+..+..+++++|+..|++++............+..|.||||+|+..|+.++
T Consensus       104 ~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~  183 (337)
T 4g8k_A          104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  183 (337)
T ss_dssp             CHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHH
T ss_pred             cchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHH
Confidence            99999999999999999999999999999999999999999999999887655554445567789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      |++||+.
T Consensus       184 v~~LL~~  190 (337)
T 4g8k_A          184 LKILLDE  190 (337)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9999964

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.92  E-value=2.5e-25  Score=222.32  Aligned_cols=162  Identities=19%  Similarity=0.127  Sum_probs=132.9

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCCcc-CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC--
Q psy2859          10 IFDFISKNDIDNVQKLLSEHKLRVDL-YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK--   86 (534)
Q Consensus        10 l~~aa~~g~~~~v~~lL~~~g~~~n~-~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~--   86 (534)
                      +++++..+....+.++|.+.|+++|. +|..|+||||+|+..|+.++|++||++|+++|. .+..|+||||+|+..|+  
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~-~d~~g~TpLh~A~~~g~~~  178 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNY  178 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHH
T ss_pred             hhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhcccc
Confidence            34667777788899999999999999 899999999999999999999999999999998 89999999999999998  


Q ss_pred             -HHHHHHHHhcC-CCCCCCCCCCCCHHHHHHH----hcHHHHHHHHhhc--------------------CCceeeccCCC
Q psy2859          87 -DDVCACLLSAG-AKSYATNSVGRTASQMAAF----VVVAVINNYIAKS--------------------EVDYYIVPRGL  140 (534)
Q Consensus        87 -~~iv~~Ll~~g-a~~~~~~~~G~TpL~~A~~----~~~~~i~~~L~~~--------------------~~~~~~~~~~~  140 (534)
                       .++++.|++.+ ++++.+|..|+||||+|+.    .++.+++++|++.                    |++++..+...
T Consensus       179 ~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g  258 (327)
T 1sw6_A          179 DSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGER  258 (327)
T ss_dssp             HTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC---------------
T ss_pred             cHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccC
Confidence             78888888886 7899999999999999999    7899999999887                    45544432211


Q ss_pred             C---------------CCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         141 E---------------TTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       141 ~---------------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      .               ..+..|..|.||||+|+..|+.++|++|+++
T Consensus       259 ~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~  305 (327)
T 1sw6_A          259 KDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDY  305 (327)
T ss_dssp             -CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT
T ss_pred             CChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            1               1345677899999999999999999999877

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.92  E-value=2.8e-25  Score=216.44  Aligned_cols=173  Identities=17%  Similarity=0.198  Sum_probs=153.7

Q ss_pred             hHHHHHHhCCHHHHHHHHHhCCCC--CccCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCchHHHHHH---
Q psy2859           9 EIFDFISKNDIDNVQKLLSEHKLR--VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA-DVNSGRHEHGYSALHFAA---   82 (534)
Q Consensus         9 ~l~~aa~~g~~~~v~~lL~~~g~~--~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga-~vn~~~~~~G~TpLh~A~---   82 (534)
                      +++.++..++...+..++.. +.+  +|..|..|+||||+|+..|+.++|++|++.|+ +++. .+..|+||||+|+   
T Consensus        79 ~l~~a~~~~~~~~~~~l~~~-~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~a~~~~  156 (276)
T 4hbd_A           79 DAHPELVRRHLVTFRAMSAR-LLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDK-QNRAGYSPIMLTALAT  156 (276)
T ss_dssp             TCCHHHHHHHHHHHHHHCHH-HHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTC-CCTTSCCHHHHGGGCC
T ss_pred             CCCHHHHHHHHHHHHHHHHH-HHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCC-CCCCCCCHHHHHHHHH
Confidence            44566777777777777654 444  88999999999999999999999999999998 9998 8999999999999   


Q ss_pred             --HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHh
Q psy2859          83 --LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQ  160 (534)
Q Consensus        83 --~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  160 (534)
                        ..++.+++++|++.|++++..+..|+||||+|+..|+.+++++|++.|++++.          .|..|.||||+|+..
T Consensus       157 ~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~----------~d~~G~TpLh~A~~~  226 (276)
T 4hbd_A          157 LKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNV----------QDDDGSTALMCACEH  226 (276)
T ss_dssp             CCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC----------CCCCCCCHHHHHHHC
Confidence              67899999999999999999999999999999999999999999999999854          477899999999999


Q ss_pred             cCchHHHHHHh-h------------CCcccccccchHHHHHHHHHh
Q psy2859         161 VNIHPVRVALN-L------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       161 ~~~~~v~~Ll~-~------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      |+.++|++|++ .            +|++++...+..++++.|.++
T Consensus       227 g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  272 (276)
T 4hbd_A          227 GHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR  272 (276)
T ss_dssp             TCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999998 3            677888888888888888654

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.92  E-value=2.4e-24  Score=193.12  Aligned_cols=147  Identities=18%  Similarity=0.165  Sum_probs=135.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhc
Q psy2859          39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVV  118 (534)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~  118 (534)
                      .|.||||+|+..|+.+++++|++.|++++. .+..|+||||+|+..|+.++|++|+++|++++..+..|.||||+|+..+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC
Confidence            589999999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHH
Q psy2859         119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKV  186 (534)
Q Consensus       119 ~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~  186 (534)
                      +.+++++|++.|++++.          .+..|.||||+|+..|+.+++++|++.            +|++++...+...+
T Consensus        81 ~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~  150 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNE----------YDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSV  150 (167)
T ss_dssp             CHHHHHHHHHHTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             CHHHHHHHHHCCCCCCc----------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHH
Confidence            99999999999999743          477899999999999999999999986            56777778888888


Q ss_pred             HHHHHHhhhh
Q psy2859         187 VSLLSEKQMK  196 (534)
Q Consensus       187 ~~~l~~~~~~  196 (534)
                      ++.|.+...+
T Consensus       151 ~~~L~~~~~~  160 (167)
T 3v31_A          151 QQVIESHLLK  160 (167)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888765544

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.91  E-value=1.1e-24  Score=193.07  Aligned_cols=140  Identities=19%  Similarity=0.214  Sum_probs=115.9

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCch-HHHHHH
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS-ALHFAA   82 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~T-pLh~A~   82 (534)
                      ..+.++|+.|+..|+.+.|+.||.. |+++|..|..|+||||+|+ .|+.+++++|+++|++++. .+..|.| |||+|+
T Consensus        10 ~~~~t~L~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~-~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           10 EPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPVHDAA   86 (156)
T ss_dssp             CCSTTHHHHHHHHTCHHHHHHHHTT-TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHHHHHH
T ss_pred             ccchHHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHH
Confidence            3456788888888888888777755 9999999999999999985 9999999999999999999 8999999 999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHH
Q psy2859          83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHT  156 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  156 (534)
                      ..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|+++|++++..          +..|.||.+.
T Consensus        87 ~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~----------~~~g~t~~~~  150 (156)
T 1bi7_B           87 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGS----------NHARIDAAEG  150 (156)
T ss_dssp             HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC--------------------------
T ss_pred             HCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCcc----------CcCcCccccc
Confidence            999999999999999999999999999999999999999999999999998654          5567777653

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=4.2e-24  Score=184.74  Aligned_cols=123  Identities=25%  Similarity=0.296  Sum_probs=86.6

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHh
Q psy2859          38 EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFV  117 (534)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~  117 (534)
                      ..|.||||+|+..|+.+++++|+++|++++. .|..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..
T Consensus        12 ~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           12 SDLGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             ccccHHHHHHHHhCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            4466777777777777777777777777776 666777777777777777777777777777777777777777777777


Q ss_pred             cHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHh
Q psy2859         118 VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALN  171 (534)
Q Consensus       118 ~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  171 (534)
                      ++.+++++|++.|++++.          .|..|.||||+|+..++.+++++|++
T Consensus        91 ~~~~~v~~Ll~~g~~~~~----------~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNA----------QDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCcC----------cCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            777777777777766532          35567777777777777777777665

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.91  E-value=2e-24  Score=186.78  Aligned_cols=124  Identities=24%  Similarity=0.292  Sum_probs=114.1

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCC-CchHHHHHHHc
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH-GYSALHFAALS   84 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~-G~TpLh~A~~~   84 (534)
                      +.++|+.|+..|+.+.++.||.. |+++|.+|..|+||||+|+. |+.+++++|+++|++++. .+.. |.||||+|+..
T Consensus        12 g~t~L~~A~~~~~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~~   88 (136)
T 1d9s_A           12 SDAGLATAAARGQVETVRQLLEA-GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC-ADPATLTRPVHDAARE   88 (136)
T ss_dssp             CSCHHHHHHHTTCHHHHHHHHHT-TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-CBTTTTBCHHHHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHc-CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-cCCCCCCCHHHHHHHc
Confidence            45667777777777776666655 99999999999999999999 999999999999999999 8888 99999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCc
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVD  132 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~  132 (534)
                      |+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+|
T Consensus        89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999875

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.91  E-value=1.2e-23  Score=181.97  Aligned_cols=123  Identities=29%  Similarity=0.435  Sum_probs=114.7

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      ..++++.||..|+.+.++.||.. |+++|..|..|+||||+|+..|+.+++++|+++|+++|. .|..|.||||+|+..|
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~-g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~   91 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMAN-GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA-VDAIGFTPLHLAAFIG   91 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHcC
Confidence            35678888888888888777765 999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcC
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSE  130 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~  130 (534)
                      +.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|
T Consensus        92 ~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           92 HLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             CHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999865

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.91  E-value=1.2e-24  Score=188.32  Aligned_cols=131  Identities=19%  Similarity=0.133  Sum_probs=114.9

Q ss_pred             CCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC
Q psy2859          30 KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT  109 (534)
Q Consensus        30 g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~T  109 (534)
                      |+|+ .+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            5677 6789999999999999999999999999999998 8999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         110 ASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       110 pL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      |||+|+..++.+++++|++.|++++.          .+..|.|||++|+..+..+++.+|.+.
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNA----------VNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            99999999999999999999998743          477899999999988888877666543

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.90  E-value=9.3e-24  Score=189.77  Aligned_cols=145  Identities=27%  Similarity=0.296  Sum_probs=130.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Q psy2859          37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF  116 (534)
Q Consensus        37 d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~  116 (534)
                      ...+.||||.|+..|+.++|++|+++|+++|. .+..|.||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   89 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAAL   89 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            45678999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchH
Q psy2859         117 VVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVR  184 (534)
Q Consensus       117 ~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~  184 (534)
                      .++.+++++|++.|++++.          .+..|.||||+|+..|+.+++++|++.            +|++++...+..
T Consensus        90 ~~~~~~~~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~  159 (169)
T 2y1l_E           90 FGHLEIVEVLLKNGADVNA----------NDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNE  159 (169)
T ss_dssp             TTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             cCCHHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCH
Confidence            9999999999999999743          467899999999999999999999986            456666666777


Q ss_pred             HHHHHHHH
Q psy2859         185 KVVSLLSE  192 (534)
Q Consensus       185 ~~~~~l~~  192 (534)
                      ++++.|.+
T Consensus       160 ~~~~~L~~  167 (169)
T 2y1l_E          160 DLAEILQK  167 (169)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            77777643

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.90  E-value=1.1e-23  Score=207.08  Aligned_cols=172  Identities=19%  Similarity=0.198  Sum_probs=131.9

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++|+.|+..|+.+.|. +|.++|+++|..|..|+||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+
T Consensus        74 ~t~L~~A~~~g~~~~v~-~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~  151 (299)
T 1s70_B           74 LTALHQACIDDNVDMVK-FLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAM  151 (299)
T ss_dssp             CBHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCCSHHH
T ss_pred             CCHHHHHHHcCCHHHHH-HHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHhcch
Confidence            35666666666666555 55556999999999999999999999999999999999999998 78888888888888888


Q ss_pred             HHHHHHHHhc-CCCCC--------------------------CCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCC
Q psy2859          87 DDVCACLLSA-GAKSY--------------------------ATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRG  139 (534)
Q Consensus        87 ~~iv~~Ll~~-ga~~~--------------------------~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~  139 (534)
                      .++++.|+.. |++++                          ..+..|.||||+|+..|+.+++++|++.|++++.    
T Consensus       152 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~----  227 (299)
T 1s70_B          152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI----  227 (299)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC----
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCC----
Confidence            8887766653 44432                          2456788888888888888888888888887643    


Q ss_pred             CCCCCCCCCCCCchHHHHHHhcCchHHHHH------Hhh------CCcccccccchHHHHHHH
Q psy2859         140 LETTPKLDPILAEPLHTFIMQVNIHPVRVA------LNL------LPSLISHLPSVRKVVSLL  190 (534)
Q Consensus       140 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L------l~~------~p~~~~~~~~~~~~~~~l  190 (534)
                            .|..|.||||+|+..|+.+++++|      +..      +|++++.......+.+++
T Consensus       228 ------~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~l~~l~  284 (299)
T 1s70_B          228 ------KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQ  284 (299)
T ss_dssp             ------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSGGGHHHHHHH
T ss_pred             ------cCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHHHHHHHHHHH
Confidence                  366788888888888888888877      221      777777665544444444

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.90  E-value=4.3e-23  Score=195.58  Aligned_cols=178  Identities=20%  Similarity=0.191  Sum_probs=153.3

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d-~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .++++.|+..|+.+.+..|+ +.|.+++..+ ..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus        43 ~t~L~~A~~~~~~~~v~~Ll-~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~  120 (240)
T 3eu9_A           43 VTLLHWAAINNRIDLVKYYI-SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL-IDGEGCSCIHLAAQFG  120 (240)
T ss_dssp             CCHHHHHHHTTCHHHHHHHH-HTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHhCCHHHHHHHH-HcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcC
Confidence            35566666666666555554 5588887654 5599999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcH-HHHHHHHhhcCCceeeccCCCCCCCCCCC-CCCchHHHHHHhcCc
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVV-AVINNYIAKSEVDYYIVPRGLETTPKLDP-ILAEPLHTFIMQVNI  163 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~-~~i~~~L~~~~~~~~~~~~~~~~~~~~~~-~g~t~L~~A~~~~~~  163 (534)
                      +.+++++|+++|++++..+..|.||||+|+..+. ..++++|+..+++++..          +. .|.||||+|+..|+.
T Consensus       121 ~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~----------~~~~g~t~L~~A~~~~~~  190 (240)
T 3eu9_A          121 HTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG----------DKYHKNTALHWAVLAGNT  190 (240)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCC----------CTTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchh----------hccCCCcHHHHHHHcCCH
Confidence            9999999999999999999999999999997755 78999999999998543          33 689999999999999


Q ss_pred             hHHHHHHhh------------CCcccccccchHHHHHHHHHhhhh
Q psy2859         164 HPVRVALNL------------LPSLISHLPSVRKVVSLLSEKQMK  196 (534)
Q Consensus       164 ~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~~~  196 (534)
                      +++++|+++            +|++++...+...+++.|.+....
T Consensus       191 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            999999986            688999999999999999775543

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=3.7e-23  Score=175.55  Aligned_cols=121  Identities=33%  Similarity=0.431  Sum_probs=65.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcH
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVV  119 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~  119 (534)
                      |+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..+.
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            45555555555555555555555555555 45555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHh
Q psy2859         120 AVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALN  171 (534)
Q Consensus       120 ~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  171 (534)
                      .+++++|++.|++++          ..+..|.|||++|+..++.+++++|++
T Consensus        81 ~~~~~~Ll~~g~~~~----------~~~~~g~t~l~~A~~~~~~~~~~~Ll~  122 (126)
T 1n0r_A           81 LEVVKLLLEAGADVN----------AKDKNGRTPLHLAARNGHLEVVKLLLE  122 (126)
T ss_dssp             HHHHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCc----------ccCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            555555555555542          123445555555555555555555554

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.90  E-value=1.2e-23  Score=207.27  Aligned_cols=140  Identities=20%  Similarity=0.239  Sum_probs=123.9

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCcc------CCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCch
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDL------YDEHGMTPLQHAAYK---GNKQICQLLLDHGADVNSGRHEHGYS   76 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~------~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~~~~~G~T   76 (534)
                      +.++|+.|+..|+...|..+|. .|+++|.      .+..|+||||+|+..   |+.++|++||++|+++|. .|..|+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~-~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~-~d~~G~T  228 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFA-NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-KAADGNT  228 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTC-CCTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHh-cCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCC-CCCCCCC
Confidence            4567999999999999998885 5999998      689999999999997   899999999999999999 8999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHH
Q psy2859          77 ALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHT  156 (534)
Q Consensus        77 pLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  156 (534)
                      |||+|+..|+.++|++||++|++++.+|..|.||||+|+..++.+++++|++.|++                .|.||||+
T Consensus       229 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------------~g~tpLh~  292 (301)
T 2b0o_E          229 ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG----------------TFAFPLHV  292 (301)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------------TTSSCCC-
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------------CCCChhHH
Confidence            99999999999999999999999999999999999999999999999999998876                37899999


Q ss_pred             HHHhcCc
Q psy2859         157 FIMQVNI  163 (534)
Q Consensus       157 A~~~~~~  163 (534)
                      |+..|+.
T Consensus       293 A~~~g~~  299 (301)
T 2b0o_E          293 DYSWVIS  299 (301)
T ss_dssp             -------
T ss_pred             HHhcCCc
Confidence            9998764

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.90  E-value=1.3e-23  Score=187.03  Aligned_cols=143  Identities=22%  Similarity=0.210  Sum_probs=130.1

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhc
Q psy2859          39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVV  118 (534)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~  118 (534)
                      ...||||.|+..|+.+++++|+++|++++. .+..|+||||+|+. |+.+++++|+++|++++.++..|.||||+|+..+
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   81 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG   81 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCCCCccc-cCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence            456999999999999999999999999999 89999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh-------------CCcccccccchHH
Q psy2859         119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL-------------LPSLISHLPSVRK  185 (534)
Q Consensus       119 ~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------~p~~~~~~~~~~~  185 (534)
                      +.+++++|++.|++++.          .+..|.||||+|+..|+.+++++|++.             +|++++...+..+
T Consensus        82 ~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~  151 (162)
T 1ihb_A           82 FLDTLQTLLEFQADVNI----------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNE  151 (162)
T ss_dssp             CHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred             CHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHH
Confidence            99999999999998743          467899999999999999999999976             5666777777777


Q ss_pred             HHHHHHHh
Q psy2859         186 VVSLLSEK  193 (534)
Q Consensus       186 ~~~~l~~~  193 (534)
                      +++.|.+.
T Consensus       152 ~~~~Ll~~  159 (162)
T 1ihb_A          152 VVSLMQAN  159 (162)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHh
Confidence            88887553

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.90  E-value=8.7e-23  Score=173.23  Aligned_cols=125  Identities=30%  Similarity=0.403  Sum_probs=117.8

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.|+..|+.+.+..|+.. |++++..|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHH-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CccHHHHHHHcCcHHHHHHHHHc-CCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCcHHHHHHHcC
Confidence            45778888888988888777765 999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCc
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVD  132 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~  132 (534)
                      +.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|+|
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999975

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.89  E-value=3.3e-23  Score=186.59  Aligned_cols=128  Identities=20%  Similarity=0.215  Sum_probs=116.9

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.|+..|+.+.+..|| +.|+++|..|..|.||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus        36 g~t~L~~A~~~~~~~~v~~Ll-~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~  113 (172)
T 3v30_A           36 GFTPLIWASAFGEIETVRFLL-EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI-YDWNGGTPLLYAVRGN  113 (172)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHH-HHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-HcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcC
Confidence            346666777777776666655 55999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceee
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYI  135 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~  135 (534)
                      +.++|++|+++|++++.+|..|.||||+|+..++.+++++|+++++++..
T Consensus       114 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A          114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999998754

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=1.1e-23  Score=186.75  Aligned_cols=127  Identities=18%  Similarity=0.087  Sum_probs=117.4

Q ss_pred             ccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCC-HHH
Q psy2859          34 DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRT-ASQ  112 (534)
Q Consensus        34 n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~T-pL~  112 (534)
                      +..+..|.||||+|+..|+.++|++|+++|+++|. .+..|+||||+|+ .|+.++|++|+++|++++.+|..|.| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            45578899999999999999999999999999999 8999999999995 99999999999999999999999999 999


Q ss_pred             HHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         113 MAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       113 ~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +|+..++.+++++|++.|++++.          .+..|.||||+|+..|+.+++++|+++
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~----------~d~~g~tpl~~A~~~~~~~~v~~Ll~~  133 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDV----------RDAWGRLPVDLAEELGHRDVARYLRAA  133 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSC----------CCTTCCCHHHHHHHHTCHHHHHHHSSC
T ss_pred             HHHHCCCHHHHHHHHHcCCCCcc----------cCCCCCCHHHHHHHhCHHHHHHHHHHc
Confidence            99999999999999999999854          467899999999999999999999987

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.89  E-value=9.3e-23  Score=184.98  Aligned_cols=145  Identities=21%  Similarity=0.204  Sum_probs=131.3

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Q psy2859          38 EHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF  116 (534)
Q Consensus        38 ~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~  116 (534)
                      ..+.+|||.|+..|+.++|++|++. +.+++. .+..|.||||+|+..|+.++|++|++.|++++..+..|.||||+|+.
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~   81 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAAS   81 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccc-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence            4678999999999999999999998 678888 89999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchH
Q psy2859         117 VVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVR  184 (534)
Q Consensus       117 ~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~  184 (534)
                      .++.+++++|++.|++++.          .+..|.||||+|+..++.+++++|+++            +|++++...+..
T Consensus        82 ~~~~~~v~~Ll~~g~~~~~----------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~  151 (179)
T 3f6q_A           82 HGHRDIVQKLLQYKADINA----------VNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRE  151 (179)
T ss_dssp             TTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCc----------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHH
Confidence            9999999999999999743          477899999999999999999999976            688888888888


Q ss_pred             HHHHHHHHh
Q psy2859         185 KVVSLLSEK  193 (534)
Q Consensus       185 ~~~~~l~~~  193 (534)
                      .+++.|.+.
T Consensus       152 ~~~~~L~~~  160 (179)
T 3f6q_A          152 LLRERAEKM  160 (179)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            899998653

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.89  E-value=3.7e-23  Score=182.58  Aligned_cols=139  Identities=26%  Similarity=0.195  Sum_probs=123.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcH
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVV  119 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~  119 (534)
                      +.||||.|+..|+.+++++|++.|++++  .+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   79 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGH   79 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCh
Confidence            4589999999999999999999999887  48899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHH
Q psy2859         120 AVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVV  187 (534)
Q Consensus       120 ~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~  187 (534)
                      .+++++|++.|++++.          .+..|.||||+|+..|+.+++++|+++            +|++++...+..+++
T Consensus        80 ~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~  149 (153)
T 1awc_B           80 ANIVEVLLKHGADVNA----------KDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA  149 (153)
T ss_dssp             HHHHHHHHTTTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHcCCCCCC----------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999743          467899999999999999999999987            445555555555555


Q ss_pred             HHH
Q psy2859         188 SLL  190 (534)
Q Consensus       188 ~~l  190 (534)
                      ++|
T Consensus       150 ~~L  152 (153)
T 1awc_B          150 EIL  152 (153)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=7e-23  Score=186.61  Aligned_cols=136  Identities=26%  Similarity=0.273  Sum_probs=121.2

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH-EHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~-~~G~TpLh~A~~~g   85 (534)
                      .++|+.|+..|+.+.+..||.  |+++|.+|..|+||||+|+..|+.+++++|+++|+++|. .+ ..|+||||+|+..|
T Consensus        45 ~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~g~tpL~~A~~~~  121 (183)
T 3deo_A           45 ETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYV  121 (183)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCSSSSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHhcC
Confidence            466777778888887777776  999999999999999999999999999999999999998 55 89999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+++|++++.+|..|.||||+|+..+..                           ..+.++|++|+..|+.++
T Consensus       122 ~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~---------------------------~~~~~~l~~a~~~~~~~i  174 (183)
T 3deo_A          122 RPEVVEALVELGADIEVEDERGLTALELAREILKT---------------------------TPKGNPMQFGRRIGLEKV  174 (183)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT---------------------------CCCCSHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC---------------------------cccccHHHHHHHcCHHHH
Confidence            99999999999999999999999999999875322                           235789999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|.++
T Consensus       175 ~~~L~~~  181 (183)
T 3deo_A          175 INVLEGQ  181 (183)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHHh
Confidence            9998764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=6.8e-23  Score=195.74  Aligned_cols=136  Identities=26%  Similarity=0.272  Sum_probs=120.9

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH-EHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~-~~G~TpLh~A~~~g   85 (534)
                      .++||.|+..|+.+.|..||.  |+++|.+|..|+||||+|+..|+.++|++|+++|+++|. .+ ..|+||||+|+..|
T Consensus        46 ~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~~g~t~L~~A~~~g  122 (244)
T 3ui2_A           46 ETPWWTAARKADEQALSQLLE--DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDH-RDMRGGLTALHMAAGYV  122 (244)
T ss_dssp             HHHHHHHHTTTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC-CCSSSCCCHHHHHHHTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHHcC
Confidence            456677777777777766666  999999999999999999999999999999999999998 55 88999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.++|++|+++|++++.+|..|.||||+|+..+.                           ...+.|||++|+..|+.++
T Consensus       123 ~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~---------------------------~~~~~~~l~~a~~~g~~~i  175 (244)
T 3ui2_A          123 RPEVVEALVELGADIEVEDERGLTALELAREILK---------------------------TTPKGNPMQFGRRIGLEKV  175 (244)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT---------------------------TCCCSSHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh---------------------------ccCCCCHHHHHHHcChHHH
Confidence            9999999999999999999999999999985311                           1347899999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|++.
T Consensus       176 v~~L~~~  182 (244)
T 3ui2_A          176 INVLEGQ  182 (244)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.89  E-value=2.2e-23  Score=197.18  Aligned_cols=138  Identities=17%  Similarity=0.107  Sum_probs=121.0

Q ss_pred             HHHhCCCCCccC---CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCC
Q psy2859          25 LLSEHKLRVDLY---DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSY  101 (534)
Q Consensus        25 lL~~~g~~~n~~---d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~  101 (534)
                      .|++.|++++..   +..|.||||+|+..|+.++|++|++.|+++|. .|..|.||||+|+..|+.++|++|++.|++++
T Consensus         3 ~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n   81 (229)
T 2vge_A            3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAGANVN   81 (229)
T ss_dssp             -------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             ehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            344458887655   45677889999999999999999999999999 89999999999999999999999999999999


Q ss_pred             CCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHH--HHhcCchHHHHHHhh
Q psy2859         102 ATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTF--IMQVNIHPVRVALNL  172 (534)
Q Consensus       102 ~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A--~~~~~~~~v~~Ll~~  172 (534)
                      .+|..|+||||+|+..|+.+++++|++.|++++..         .+..|.||||+|  +..|+.+++++|++.
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~---------~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~  145 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT---------TLSDGATAFEKCDPYREGYADCATYLADV  145 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCC---------CSSTTCCTGGGCCTTSTTHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc---------cCCCCCCHHHHHHHHhcChHHHHHHHHHc
Confidence            99999999999999999999999999999998543         135799999999  999999999999987

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.89  E-value=7.9e-23  Score=182.74  Aligned_cols=145  Identities=19%  Similarity=0.135  Sum_probs=128.9

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          36 YDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        36 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      .|..|.||||.|+..|+.++++.|++. +.+++. .+..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRD-IEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC-TTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccc-cccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHH
Confidence            367789999999999999999999984 567776 788999999999999999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccc
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPS  182 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~  182 (534)
                      +..++.+++++|++.|++++.          .+..|.||||+|+..|+.+++++|+++            +|++++.. +
T Consensus        83 ~~~~~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~  151 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGAVVNV----------ADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-G  151 (165)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC----------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-T
T ss_pred             HHcCcHHHHHHHHhCCCCCCC----------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-C
Confidence            999999999999999999743          467899999999999999999999987            56777555 6


Q ss_pred             hHHHHHHHHH
Q psy2859         183 VRKVVSLLSE  192 (534)
Q Consensus       183 ~~~~~~~l~~  192 (534)
                      ..+++++|.+
T Consensus       152 ~~~i~~~L~~  161 (165)
T 3twr_A          152 DTDIQDLLRG  161 (165)
T ss_dssp             CHHHHHHHHT
T ss_pred             ChHHHHHHhh
Confidence            6688888854

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=1.2e-22  Score=172.18  Aligned_cols=116  Identities=28%  Similarity=0.325  Sum_probs=104.3

Q ss_pred             CCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           5 MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         5 ~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      .+.++++.|+..|+.+.++.||. .|+++|.+|..|+||||+|+..|+.+++++|+++|+++|. .|..|+||||+|+..
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVA-KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVYE   83 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHH-TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTSCCHHHHHHHH
T ss_pred             ccchHHHHHHHcCCHHHHHHHHH-cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHc
Confidence            34577888888888888877666 4999999999999999999999999999999999999999 899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHH
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVI  122 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i  122 (534)
                      |+.++|++|+++|++++.+|..|.||||+|...+..++
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            99999999999999999999999999999965544443

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.88  E-value=1.4e-23  Score=209.56  Aligned_cols=146  Identities=19%  Similarity=0.092  Sum_probs=123.4

Q ss_pred             CCCc-hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC---HHHHHHHHHCC-CCCCCCCCCCCchHH
Q psy2859           4 PMEG-NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN---KQICQLLLDHG-ADVNSGRHEHGYSAL   78 (534)
Q Consensus         4 ~~~~-~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~---~~iv~~Ll~~g-a~vn~~~~~~G~TpL   78 (534)
                      +..| ++||.||..|+.+.| ++|+++|+++|.+|..|+||||+|+..|+   .++++.|++.+ ++++. .+..|+|||
T Consensus       128 d~~g~TpLh~Aa~~g~~~~v-~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~-~d~~g~tpL  205 (327)
T 1sw6_A          128 DEHGNTPLHWLTSIANLELV-KHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL-EDSMNRTIL  205 (327)
T ss_dssp             STTCCCHHHHHHHTTCHHHH-HHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE-ECTTCCCHH
T ss_pred             CCCCCcHHHHHHHcCCHHHH-HHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC-CCCCCCCHH
Confidence            3444 555566666665555 55555699999999999999999999999   78889999886 78998 899999999


Q ss_pred             HHHHH----cCCHHHHHHHHhcCC---------------------------------------------CCCCCCCCCCC
Q psy2859          79 HFAAL----SGKDDVCACLLSAGA---------------------------------------------KSYATNSVGRT  109 (534)
Q Consensus        79 h~A~~----~g~~~iv~~Ll~~ga---------------------------------------------~~~~~~~~G~T  109 (534)
                      |+|+.    .|+.+++++|++.++                                             ++|.+|..|+|
T Consensus       206 h~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~T  285 (327)
T 1sw6_A          206 HHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT  285 (327)
T ss_dssp             HHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCC
T ss_pred             HHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCC
Confidence            99999    899999999998743                                             57888999999


Q ss_pred             HHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859         110 ASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus       110 pL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      |||+|+..|+.+++++|+++|++++.          .|..|.||||+|+..|
T Consensus       286 pLh~A~~~g~~~~v~~Ll~~Gad~~~----------~d~~G~TpL~~A~~~g  327 (327)
T 1sw6_A          286 CLNIAARLGNISIVDALLDYGADPFI----------ANKSGLRPVDFGAGLE  327 (327)
T ss_dssp             HHHHHHHHCCHHHHHHHHHTTCCTTC----------CCTTSCCGGGGTCC--
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcc----------cCCCCCCHHHHHHhcC
Confidence            99999999999999999999999854          4788999999998754

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.88  E-value=1.3e-23  Score=200.04  Aligned_cols=153  Identities=20%  Similarity=0.272  Sum_probs=132.4

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++|+.|+..|+.+.|..|| +.|+++|.+|..|+||||+|+..|+.++|++|+++|+++|. .|..|+||||+|+..|+
T Consensus        38 ~t~L~~A~~~g~~~~v~~Ll-~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~~  115 (239)
T 1ycs_B           38 LALLLDSSLEGEFDLVQRII-YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNN  115 (239)
T ss_dssp             HHHHHHHHHHTCHHHHHHHT-STTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTC
T ss_pred             hHHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCC
Confidence            46677788888887776666 45999999999999999999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCC-CHHHHH--HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcC
Q psy2859          87 DDVCACLLSAGAKSYATNSVGR-TASQMA--AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVN  162 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~-TpL~~A--~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~  162 (534)
                      .++|++|+++|++++..+..|. ||||+|  +..|+.+++++|+..|++++..+.+. .....+..+.+++++++..|.
T Consensus       116 ~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~-~~al~d~~~~~~~eLa~~~G~  193 (239)
T 1ycs_B          116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGV-IYALWDYEPQNDDELPMKEGD  193 (239)
T ss_dssp             HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGE-EEESSCBCCSSTTBCCBCSSC
T ss_pred             HHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccce-EEEEeccCCCCCCcccccCCC
Confidence            9999999999999999998877 999999  67799999999999999987653332 123446778888888777665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.88  E-value=7.2e-23  Score=173.66  Aligned_cols=113  Identities=20%  Similarity=0.135  Sum_probs=104.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Q psy2859          37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF  116 (534)
Q Consensus        37 d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~  116 (534)
                      +..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~   82 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVY   82 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS-CCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHH
Confidence            56789999999999999999999999999999 89999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHh
Q psy2859         117 VVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQ  160 (534)
Q Consensus       117 ~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~  160 (534)
                      .++.+++++|++.|++++          ..+..|.||||+|...
T Consensus        83 ~~~~~~v~~Ll~~ga~~~----------~~~~~g~t~l~~A~~~  116 (123)
T 3aaa_C           83 EGHVSCVKLLLSKGADKT----------VKGPDGLTAFEATDNQ  116 (123)
T ss_dssp             HTCHHHHHHHHHTTCCTT----------CCCTTSCCHHHHCCCH
T ss_pred             cCCHHHHHHHHHcCCCCC----------CcCCCCCCHHHHhCCH
Confidence            999999999999999974          3477899999999543

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.88  E-value=1.4e-22  Score=179.17  Aligned_cols=141  Identities=19%  Similarity=0.187  Sum_probs=127.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhc
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVV  118 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~  118 (534)
                      |.||||+|+..|+.+++++|++. +.+++. .+..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTC-CCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccc-cCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcC
Confidence            56899999999999999999998 458998 89999999999 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh-----------CCcccccccchHHHH
Q psy2859         119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL-----------LPSLISHLPSVRKVV  187 (534)
Q Consensus       119 ~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-----------~p~~~~~~~~~~~~~  187 (534)
                      +.+++++|++.|++++.          .+..|.||||+|+..|+.+++++|++.           +|++.+...+..+++
T Consensus        80 ~~~~v~~Ll~~g~~~~~----------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~g~t~l~~A~~~~~~~~v  149 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNV----------PDGTGALPIHLAVQEGHTAVVSFLAAESDLHRRDARGLTPLELALQRGAQDLV  149 (156)
T ss_dssp             CHHHHHHHHHTTCCSCC----------CCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred             cHHHHHHHHHcCCCCCC----------cCCCCCcHHHHHHHhChHHHHHHHHhccCCCCcCCCCCCHHHHHHHcCcHHHH
Confidence            99999999999999754          367899999999999999999999965           567777777777777


Q ss_pred             HHHHH
Q psy2859         188 SLLSE  192 (534)
Q Consensus       188 ~~l~~  192 (534)
                      +.|.+
T Consensus       150 ~~Ll~  154 (156)
T 1bd8_A          150 DILQG  154 (156)
T ss_dssp             HHHHT
T ss_pred             HHHHh
Confidence            77753

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.87  E-value=1.6e-22  Score=174.98  Aligned_cols=124  Identities=30%  Similarity=0.296  Sum_probs=109.8

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++||.|+..|+.+.+..||. .|++++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|
T Consensus        10 g~t~L~~A~~~~~~~~~~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~   87 (137)
T 3c5r_A           10 GETLLHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT-TGYQNDSPLHDAAKNG   87 (137)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHH-TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCGGGCCHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHH-cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccC-cCCCCCCHHHHHHHcC
Confidence            4467777778888777766665 5999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCC
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEV  131 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~  131 (534)
                      +.+++++|+++|++++.+|..|.||||+|+..+..+++.+|.+.+.
T Consensus        88 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~  133 (137)
T 3c5r_A           88 HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES  133 (137)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence            9999999999999999999999999999999999999888876543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.87  E-value=3.4e-22  Score=187.86  Aligned_cols=129  Identities=23%  Similarity=0.322  Sum_probs=110.2

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCchHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~-ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .++|+.||..|+.+.|..||. .|+++|.+|..|+||||+|+..|+.++|++|++. |+++|. .|..|+||||+|+..|
T Consensus        74 ~t~L~~A~~~g~~~~v~~Ll~-~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~-~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           74 DNPLHEAAKRGNLSWLRECLD-NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ-QNKLGDTALHAAAWKG  151 (222)
T ss_dssp             SCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCC-CCTTSCCHHHHHHHHT
T ss_pred             ccccccccccCcHHHHHHHHh-CCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccc-cCCCCCCHHHHHHHcC
Confidence            468888888888888877776 5999999999999999999999999999999999 999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeecc
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVP  137 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~  137 (534)
                      +.++|++|+++|++++.+|..|.||||+|+..+..++++.|+..++.....+
T Consensus       152 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          152 YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             CHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-------------
T ss_pred             CHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccc
Confidence            9999999999999999999999999999999999999999999999876653

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.87  E-value=9.8e-23  Score=186.00  Aligned_cols=128  Identities=14%  Similarity=0.194  Sum_probs=112.1

Q ss_pred             chhHHHHHHhCCHH---HHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC------HHHHHHHHHCCCCCCCCCCCCCc-h
Q psy2859           7 GNEIFDFISKNDID---NVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN------KQICQLLLDHGADVNSGRHEHGY-S   76 (534)
Q Consensus         7 ~~~l~~aa~~g~~~---~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~------~~iv~~Ll~~ga~vn~~~~~~G~-T   76 (534)
                      .++||.|+..|+.+   .+.++|++.|+++|.+|..|+||||+|+..|+      .++|++||++|+++|. +|..|. |
T Consensus        39 ~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~-~d~~g~tt  117 (186)
T 3t8k_A           39 SNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA-LYKPYKIV  117 (186)
T ss_dssp             TTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSS-CBGGGTBC
T ss_pred             CCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCc-cCCCcCch
Confidence            45666666666654   47788888899999999999999999999987      6899999999999999 899999 9


Q ss_pred             HHHHHHHcC-----CHHHHHHHHh-cCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceee
Q psy2859          77 ALHFAALSG-----KDDVCACLLS-AGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYI  135 (534)
Q Consensus        77 pLh~A~~~g-----~~~iv~~Ll~-~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~  135 (534)
                      |||+|+..+     +.+++++|++ +|++++.+|..|.||||+|+..++.+++++|.....+++.
T Consensus       118 pLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          118 VFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             TTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence            999999954     4579999999 9999999999999999999999999999999987655543

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.86  E-value=1.4e-22  Score=190.59  Aligned_cols=126  Identities=21%  Similarity=0.172  Sum_probs=114.8

Q ss_pred             CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHH
Q psy2859          36 YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA-GAKSYATNSVGRTASQMA  114 (534)
Q Consensus        36 ~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~-ga~~~~~~~~G~TpL~~A  114 (534)
                      .+..|.||||+|+..|+.++|++|++.|+++|. .+..|+||||+|+..|+.++|++|++. |++++.+|..|+||||+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            356789999999999999999999999999998 899999999999999999999999999 999999999999999999


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +..|+.+++++|++.|++++.          .+..|.|||++|+..++.++++.|+..
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~----------~~~~g~t~l~~A~~~~~~~~l~~l~~~  195 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDL----------RNIEKKLAFDMATNAACASLLKKKQGT  195 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCC----------CCTTSCCHHHHCCSHHHHHHHC-----
T ss_pred             HHcCCHHHHHHHHHcCCCCcc----------ccCCCCCHHHHhcchhHHHHHHHHhcc
Confidence            999999999999999999854          477899999999999999999998876

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=1.1e-21  Score=157.58  Aligned_cols=93  Identities=35%  Similarity=0.487  Sum_probs=87.7

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhc
Q psy2859          39 HGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVV  118 (534)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~  118 (534)
                      +|+||||+|+..|+.+++++|+++|+++|. .|..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            489999999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCc
Q psy2859         119 VAVINNYIAKSEVD  132 (534)
Q Consensus       119 ~~~i~~~L~~~~~~  132 (534)
                      +.+++++|++.|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999998875

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.86  E-value=1.5e-22  Score=184.48  Aligned_cols=139  Identities=27%  Similarity=0.221  Sum_probs=123.1

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHH
Q psy2859          37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATN-SVGRTASQMAA  115 (534)
Q Consensus        37 d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~G~TpL~~A~  115 (534)
                      +..|.||||+|+..|+.+++++|++ |+++|. .|..|.||||+|+..|+.++|++|+++|++++.++ ..|+||||+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578999999999999999999999 999999 89999999999999999999999999999999998 89999999999


Q ss_pred             HhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhhCCcccccccchHHHHHHHHH
Q psy2859         116 FVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       116 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~p~~~~~~~~~~~~~~~l~~  192 (534)
                      ..++.+++++|++.|++++.          .|..|.||||+|+..++.+.+.     .++..+...+..++++.|.+
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~----------~d~~g~tpl~~A~~~~~~~~~~-----~~l~~a~~~~~~~i~~~L~~  180 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEV----------EDERGLTALELAREILKTTPKG-----NPMQFGRRIGLEKVINVLEG  180 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTC----------CCTTSCCHHHHHHHHHHTCCCC-----SHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCcHHHHHHHHHcCCCCcC----------CCCCCCCHHHHHHHhccCcccc-----cHHHHHHHcCHHHHHHHHHH
Confidence            99999999999999999743          4778999999999877665543     34455666777888888754

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=3.3e-21  Score=187.61  Aligned_cols=124  Identities=16%  Similarity=0.235  Sum_probs=115.7

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCc------cCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCchHH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVD------LYDEHGMTPLQHAAYK---GNKQICQLLLDHGADVNSGRHEHGYSAL   78 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n------~~d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~~~~~G~TpL   78 (534)
                      .+++.|+..|+...+..++.. |++++      ..|..|+||||+|+..   |+.++|++|+++|+++|. .|..|+|||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~-g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~-~d~~g~TpL  209 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTAL  209 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHH
T ss_pred             hhhhhHhhhcccHHHHHHHHh-hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccc-cCCCCCCHH
Confidence            578899999999998887766 88854      4488999999999999   899999999999999999 899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCce
Q psy2859          79 HFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDY  133 (534)
Q Consensus        79 h~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~  133 (534)
                      |+|+..|+.++|++||++|++++.+|..|.||||+|+..|+.+++++|++.|++.
T Consensus       210 h~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          210 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999999999874

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.85  E-value=4.1e-21  Score=193.57  Aligned_cols=143  Identities=22%  Similarity=0.271  Sum_probs=112.5

Q ss_pred             hhHHHHHHh-CCHHHHHHHHHhCCCCCccCC--CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHc
Q psy2859           8 NEIFDFISK-NDIDNVQKLLSEHKLRVDLYD--EHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALS   84 (534)
Q Consensus         8 ~~l~~aa~~-g~~~~v~~lL~~~g~~~n~~d--~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~   84 (534)
                      ++|+.|+.. |+.+.+..||. .|+++|..+  ..|.||||+|+..|+.++|++||++|+++|. .|..|+||||+|+..
T Consensus       201 t~L~~Aa~~~g~~~~v~~LL~-~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~-~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          201 ALLFRASGHPPSLPTMADALA-HGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQ-ADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHTSSSCCHHHHHHHHH-TTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHH
T ss_pred             cHHHHHHHccCCHHHHHHHHH-cCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHc
Confidence            466666767 77777776665 599999998  8999999999999999999999999999999 899999999999999


Q ss_pred             CCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHH
Q psy2859          85 GKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIM  159 (534)
Q Consensus        85 g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  159 (534)
                      |+.++|++||++|++++..|..|.||||+|+..++.+++++|+..+......       ...+..+.|+++++-.
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~-------~~~~~~~~t~l~i~~~  346 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEA-------AQGQAGDETYLDIFRD  346 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------------------
T ss_pred             CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccc-------cccCCCCCCHHHHHHH
Confidence            9999999999999999999999999999999999999999999887543211       2223456677765443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.84  E-value=3e-21  Score=184.29  Aligned_cols=142  Identities=26%  Similarity=0.218  Sum_probs=126.3

Q ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHH
Q psy2859          37 DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATN-SVGRTASQMAA  115 (534)
Q Consensus        37 d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~-~~G~TpL~~A~  115 (534)
                      +..|.||||+|+..|+.++|++||+ |+++|. .|..|.||||+|+..|+.++|++|+++|++++..+ ..|+||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            3578999999999999999999999 999999 89999999999999999999999999999999998 78999999999


Q ss_pred             HhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhhCCcccccccchHHHHHHHHHhhh
Q psy2859         116 FVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNLLPSLISHLPSVRKVVSLLSEKQM  195 (534)
Q Consensus       116 ~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~p~~~~~~~~~~~~~~~l~~~~~  195 (534)
                      ..|+.+++++|+.+|++++.          .+..|.||||+|+..++...     ..+|++.+...+...+++.|.+..+
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~----------~d~~g~t~l~~A~~~~~~~~-----~~~~l~~a~~~g~~~iv~~L~~~~~  184 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEV----------EDERGLTALELAREILKTTP-----KGNPMQFGRRIGLEKVINVLEGQVF  184 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC----------CCTTCCCHHHHHHHHHTTCC-----CSSHHHHHHHHHHHHHHHHHHHHHE
T ss_pred             HcCCHHHHHHHHHCCCCCCC----------CCCCCCcHHHHHHHHHhccC-----CCCHHHHHHHcChHHHHHHHHHhcc
Confidence            99999999999999999853          47789999999997544322     1267778888899999999977644

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.83  E-value=3.7e-20  Score=182.20  Aligned_cols=133  Identities=13%  Similarity=0.018  Sum_probs=117.2

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy2859          41 MTPLQHAAYKGNKQICQLLLDHGADVNSG-----RHEHGYSALHFAALS---GKDDVCACLLSAGAKSYATNSVGRTASQ  112 (534)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~-----~~~~G~TpLh~A~~~---g~~~iv~~Ll~~ga~~~~~~~~G~TpL~  112 (534)
                      .++||.|+..|+++.|+.|++.|++++..     .+..|.||||+|+..   |+.++|++||++|+++|.+|..|+||||
T Consensus       152 ~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh  231 (301)
T 2b0o_E          152 PQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHH
T ss_pred             HHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            46799999999999999999999999873     488999999999997   8999999999999999999999999999


Q ss_pred             HHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------CCcccccccch
Q psy2859         113 MAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------LPSLISHLPSV  183 (534)
Q Consensus       113 ~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------~p~~~~~~~~~  183 (534)
                      +|+..|+.+++++|++.|++++.          .|..|.||||+|+..++.+++++|++.      +|++++...++
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad~~~----------~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~g~tpLh~A~~~g~  298 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRALVGT----------VNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVDYSWVI  298 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCCSC----------CCTTSCCHHHHHHHHTCHHHHHHHHHHHHHTTSSCCC-------
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCChhHHHHhcCC
Confidence            99999999999999999999854          477899999999999999999999977      67777665543

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.82  E-value=3.8e-22  Score=201.86  Aligned_cols=144  Identities=12%  Similarity=-0.032  Sum_probs=101.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHH
Q psy2859          41 MTPLQHAAYKGNKQICQLLLDHGADV---NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKS---YATNSVGRTASQMA  114 (534)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~ga~v---n~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~---~~~~~~G~TpL~~A  114 (534)
                      .||||+|+..|+.++|++|+++|+..   +. .+..|.||||+|+..|+.++|++|+++|+++   +..+.+ .||||+|
T Consensus        93 ~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~-~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           93 EVICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCcHHHHHH-hccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence            48888888888888888888887732   12 3456778888888888888888888888652   322223 7888888


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHH-HhcCchHHHHHHhh-----CCcccccccchHHHHH
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFI-MQVNIHPVRVALNL-----LPSLISHLPSVRKVVS  188 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~-~~~~~~~v~~Ll~~-----~p~~~~~~~~~~~~~~  188 (534)
                      +..|+.+++++|++.|++++..        ..+..|.||||+|+ ..|+.++|++|++.     +|++.+...+..++++
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~~~--------~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~~~taL~~Aa~~g~~evv~  242 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEATA--------MIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP  242 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHH--------HHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred             HHCCCHHHHHHHHHcCCccchh--------ccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCccchHHHHHHHCCCHHHHH
Confidence            8888888888888888775430        02445778888888 88888888888765     6777777777777777


Q ss_pred             HHHHhh
Q psy2859         189 LLSEKQ  194 (534)
Q Consensus       189 ~l~~~~  194 (534)
                      +|.+.+
T Consensus       243 lL~~~g  248 (376)
T 2aja_A          243 FIARHV  248 (376)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            776654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.82  E-value=3.5e-20  Score=186.76  Aligned_cols=124  Identities=23%  Similarity=0.154  Sum_probs=116.7

Q ss_pred             CCCCcHHHHHHHc-CCHHHHHHHHHCCCCCCCCCC--CCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          38 EHGMTPLQHAAYK-GNKQICQLLLDHGADVNSGRH--EHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        38 ~~g~TpLh~Aa~~-g~~~iv~~Ll~~ga~vn~~~~--~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      ..+.|+||.|+.. |+++++++||++|+++|. .+  ..|.||||+|+..|+.++|++||++|+++|..|..|+||||+|
T Consensus       197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A  275 (368)
T 3jue_A          197 LHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHA  275 (368)
T ss_dssp             CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3456899999999 999999999999999998 66  8999999999999999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +..++.+++++|+++|++++.          .|..|.||||+|+..++.+++++|+..
T Consensus       276 ~~~g~~~~v~~LL~~Gad~~~----------~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          276 TILGHTGLACLFLKRGADLGA----------RDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHHHCcCCCCC----------cCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999999999999844          477899999999999999999999876

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.3e-20  Score=157.64  Aligned_cols=101  Identities=31%  Similarity=0.398  Sum_probs=95.7

Q ss_pred             cCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          35 LYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        35 ~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      .+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            4588999999999999999999999999999998 899999999999999999999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHhhcCCceeec
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIV  136 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~  136 (534)
                      +..+..+++++|++.|++++..
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~  104 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNAR  104 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHH
T ss_pred             HHCCCHHHHHHHHHcCCCCCcC
Confidence            9999999999999999999765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=3.5e-19  Score=173.22  Aligned_cols=122  Identities=16%  Similarity=0.094  Sum_probs=113.5

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy2859          41 MTPLQHAAYKGNKQICQLLLDHGADVNSG-----RHEHGYSALHFAALS---GKDDVCACLLSAGAKSYATNSVGRTASQ  112 (534)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~-----~~~~G~TpLh~A~~~---g~~~iv~~Ll~~ga~~~~~~~~G~TpL~  112 (534)
                      .++|+.|+..|+++.++.|+..|++++..     .+..|.||||+|+..   |+.++|++|+++|+++|.+|..|+||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            46899999999999999999999996542     378899999999999   8999999999999999999999999999


Q ss_pred             HHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         113 MAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       113 ~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +|+..|+.+++++|++.|++++.          .|..|.||||+|+..|+.+++++|+++
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~----------~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEI----------ANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCC----------ccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999999854          477899999999999999999999987

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=2.2e-21  Score=196.29  Aligned_cols=145  Identities=15%  Similarity=0.009  Sum_probs=122.3

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCC---CccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCC---CCCCCCCCchHHHHH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLR---VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV---NSGRHEHGYSALHFA   81 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~---~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~v---n~~~~~~G~TpLh~A   81 (534)
                      ++|+.||..|+.+.|+.||.. |+.   .+..+..|.||||+||..|+.++|++|+++|+++   +. .+.+ .||||+|
T Consensus        94 T~Lh~Aa~~G~~e~v~~Ll~~-ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i-~~~~-~TpLh~A  170 (376)
T 2aja_A           94 VICFVAAITGCSSALDTLCLL-LTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI-QAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHCCHHHHHHHTTC---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH-SHHH-HHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHc-CCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCC-CCHHHHH
Confidence            678888888888888777755 652   2234567889999999999999999999999863   32 2223 9999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCC--CCCCCCCHHHHHH-HhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHH
Q psy2859          82 ALSGKDDVCACLLSAGAKSYA--TNSVGRTASQMAA-FVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFI  158 (534)
Q Consensus        82 ~~~g~~~iv~~Ll~~ga~~~~--~~~~G~TpL~~A~-~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  158 (534)
                      +..|+.++|++|+++|++++.  .|..|.||||+|+ ..|+.+++++|++.|++                 |.|||+.|+
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-----------------~~taL~~Aa  233 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-----------------LAYAEIHEF  233 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-----------------HHHHHHCTT
T ss_pred             HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-----------------cchHHHHHH
Confidence            999999999999999999887  8889999999999 99999999999986632                 789999999


Q ss_pred             HhcCchHHHHHHhh
Q psy2859         159 MQVNIHPVRVALNL  172 (534)
Q Consensus       159 ~~~~~~~v~~Ll~~  172 (534)
                      ..|+.+++++|++.
T Consensus       234 ~~g~~evv~lL~~~  247 (376)
T 2aja_A          234 EYGEKYVNPFIARH  247 (376)
T ss_dssp             TTTTTTHHHHHHHH
T ss_pred             HCCCHHHHHHHHhc
Confidence            99999999999986

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.80  E-value=2.1e-19  Score=189.58  Aligned_cols=122  Identities=13%  Similarity=0.019  Sum_probs=114.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC------CCCCchHHHHHHH---cCCHHHHHHHHhcCCCCCCCCCCCCCH
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGR------HEHGYSALHFAAL---SGKDDVCACLLSAGAKSYATNSVGRTA  110 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~------~~~G~TpLh~A~~---~g~~~iv~~Ll~~ga~~~~~~~~G~Tp  110 (534)
                      ..+.||.|+..|++++|+.||+.|+++|. .      +..|.||||+|+.   .|+.++|++||++|+++|.+|..|+||
T Consensus       132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~-~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp  210 (497)
T 3lvq_E          132 EPQRLWTAICNRDLLSVLEAFANGQDFGQ-PLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA  210 (497)
T ss_dssp             CHHHHHHHHHHTCHHHHHHHHHTTCCSSS-CBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred             cHHHHHHHHhccCHHHHHHHHhhcccccC-CCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence            34679999999999999999999999997 5      8899999999966   999999999999999999999999999


Q ss_pred             HHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         111 SQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       111 L~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ||+|+..|+.+++++|+++|++++.          .|..|.||||+|+..|+.+++++|+++
T Consensus       211 Lh~A~~~g~~~~v~~Ll~~ga~~~~----------~d~~g~tpl~~A~~~~~~~~~~~Ll~~  262 (497)
T 3lvq_E          211 LHYAALYNQPDCLKLLLKGRALVGT----------VNEAGETALDIARKKHHKECEELLEQA  262 (497)
T ss_dssp             HHHHTTTTCHHHHHHHHHTCCCCSC----------CCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCC----------cCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            9999999999999999999999854          477899999999999999999999988

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.79  E-value=7e-19  Score=141.04  Aligned_cols=92  Identities=35%  Similarity=0.501  Sum_probs=83.6

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++||.|+..|+.+.+..|+. .|+++|.+|..|+||||+|+..|+.+++++|+++|++++. .|..|.||||+|+..|
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~-~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLE-AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNG   79 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CCcHHHHHHHcCCHHHHHHHHH-cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcC
Confidence            4567888888888877766555 5999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCC
Q psy2859          86 KDDVCACLLSAGAK   99 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~   99 (534)
                      +.+++++|+++|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999999985

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.77  E-value=9e-19  Score=145.21  Aligned_cols=93  Identities=27%  Similarity=0.335  Sum_probs=85.8

Q ss_pred             CccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Q psy2859          33 VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQ  112 (534)
Q Consensus        33 ~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~  112 (534)
                      ++..|.+|.||||+|+..|+.+++++|+++|+++|. .|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~-~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~   95 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFD   95 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHH
Confidence            344578899999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             HHHHhcHHHHHHHH
Q psy2859         113 MAAFVVVAVINNYI  126 (534)
Q Consensus       113 ~A~~~~~~~i~~~L  126 (534)
                      +|+..++.+++++|
T Consensus        96 ~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           96 ISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999887

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.77  E-value=2.7e-19  Score=149.48  Aligned_cols=104  Identities=29%  Similarity=0.414  Sum_probs=91.4

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +.++|+.|+..|+.+.+..|| +.|+++|..|..|.||||+|+..|+.+++++|+++|++++. .|..|.||||+|+..|
T Consensus         9 g~t~L~~A~~~~~~~~~~~Ll-~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~tpl~~A~~~~   86 (115)
T 2l6b_A            9 GNTPLHNAAKNGHAEEVKKLL-SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA-RSKDGNTPEHLAKKNG   86 (115)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHT-TTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTC-CCTTCCCTTHHHHTTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHH-HcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHCC
Confidence            346667777777776665555 55999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTAS  111 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL  111 (534)
                      +.+++++|+++|+++|.++..|.||-
T Consensus        87 ~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           87 HHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999873

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.66  E-value=5.3e-16  Score=128.37  Aligned_cols=86  Identities=29%  Similarity=0.494  Sum_probs=77.7

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      ++++||.|+..|+.+.+..||. .|+++|.+|..|+||||+|+..|+.+++++|+++|++++. .|..|.||||+|+..|
T Consensus        24 g~t~L~~A~~~g~~~~v~~Ll~-~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~-~d~~g~tpl~~A~~~~  101 (110)
T 2zgd_A           24 LGKKLLEAARAGQDDEVRILMA-NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXA-QDKFGKTAFDISIDNG  101 (110)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHH-TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cccCCCcHHHHHHHcC
Confidence            3466777788888877766665 5999999999999999999999999999999999999999 8999999999999999


Q ss_pred             CHHHHHHH
Q psy2859          86 KDDVCACL   93 (534)
Q Consensus        86 ~~~iv~~L   93 (534)
                      +.+++++|
T Consensus       102 ~~~~~~~L  109 (110)
T 2zgd_A          102 NEDLAEIL  109 (110)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            99999987

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=99.29  E-value=7.3e-12  Score=92.55  Aligned_cols=46  Identities=39%  Similarity=0.934  Sum_probs=41.7

Q ss_pred             CcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhccccCCC
Q psy2859         426 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS  472 (534)
Q Consensus       426 ~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~~~  472 (534)
                      .+.|..|++. ++++|++|+.++||+++||..||+.||.+|..++..
T Consensus        15 ~~~C~~C~~~-~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~~   60 (70)
T 2d8q_A           15 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQG   60 (70)
T ss_dssp             CCBCSSSCCB-CCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCCC
T ss_pred             CCcCCCCCCc-ccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHHh
Confidence            4589999996 899999999999999999999999999999976543

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=99.28  E-value=1.4e-12  Score=95.32  Aligned_cols=60  Identities=28%  Similarity=0.632  Sum_probs=41.9

Q ss_pred             CCCCCcccccccccccCCCCCCCCCcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhccccCCC
Q psy2859         402 DPTPGFALSVLTSAINGHRGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS  472 (534)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~~~  472 (534)
                      ++.+|+.+..+.+          ....|..|++. ++++|++|+.++|||++||..||+.||.+|...+.+
T Consensus         3 ~~~~G~~il~~~~----------~~~~C~~C~~~-~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~~~   62 (64)
T 2odd_A            3 LYFQGENLYFQGD----------SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQA   62 (64)
T ss_dssp             ------------C----------CSSSCTTTSSC-CCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSCSC
T ss_pred             cCCCCCEEeeCCC----------CCCcCccccCC-CcccCCCCCChhhCCHHHHHHHHHHHhHHHhccccC
Confidence            3556666666554          23579999996 899999999999999999999999999999966543

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=99.19  E-value=1.5e-11  Score=88.42  Aligned_cols=45  Identities=33%  Similarity=0.901  Sum_probs=40.9

Q ss_pred             CCcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhccccC
Q psy2859         425 DTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSG  470 (534)
Q Consensus       425 ~~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~  470 (534)
                      ....|..|++. ++++|++|+.++||+++||..||+.||.+|..++
T Consensus        14 ~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~~   58 (60)
T 2dj8_A           14 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS   58 (60)
T ss_dssp             CSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTSCCSS
T ss_pred             CCcccccCCCC-CcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhcc
Confidence            34679999996 8999999999999999999999999999998764

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=99.18  E-value=1.2e-11  Score=88.83  Aligned_cols=45  Identities=33%  Similarity=0.883  Sum_probs=40.9

Q ss_pred             CcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhccccCC
Q psy2859         426 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP  471 (534)
Q Consensus       426 ~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~~  471 (534)
                      ...|..|++. ++++|++|+.++|||++||..||+.||.+|...+.
T Consensus        13 ~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~~~   57 (60)
T 2od1_A           13 SESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ   57 (60)
T ss_dssp             SSCCTTTSSC-CCEECTTTSCCEESSHHHHHHHHHHHTTTSSCSSC
T ss_pred             CCccccCCCc-ccccCCCCCCeeecCHHHHHHHHHHHhHHHccccc
Confidence            4679999996 89999999999999999999999999999986543

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=99.06  E-value=4.5e-11  Score=83.52  Aligned_cols=41  Identities=39%  Similarity=1.002  Sum_probs=38.0

Q ss_pred             cccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhccc
Q psy2859         427 TPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECAR  468 (534)
Q Consensus       427 ~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~  468 (534)
                      ..|..|++. ++++|++|+.++|||++||..||+.||.+|..
T Consensus        10 ~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~~   50 (52)
T 2jw6_A           10 QSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICGQ   50 (52)
T ss_dssp             -CCSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTTTC
T ss_pred             CcCCCCCCC-CcCcCCCCCCEeecCHHHHHHHHHHHCHHHcc
Confidence            579999997 89999999999999999999999999999984

>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A

Probab=98.95  E-value=9.5e-10  Score=81.18  Aligned_cols=48  Identities=40%  Similarity=0.923  Sum_probs=42.5

Q ss_pred             CCCCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhcccCCCCC
Q psy2859         323 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP  371 (534)
Q Consensus       323 ~~~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~~~  371 (534)
                      .+..+.|..|++. .+++|++|+.++||+++||..||+.||.+|..+..
T Consensus        12 ~~~~~~C~~C~~~-~~~~Cs~Ck~v~YCs~eCQ~~~W~~HK~~C~~~~~   59 (70)
T 2d8q_A           12 APERPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAAQ   59 (70)
T ss_dssp             CCCCCBCSSSCCB-CCCBCTTTSCCBCSCHHHHHHTHHHHHHHCCCCCC
T ss_pred             cCCCCcCCCCCCc-ccccCCCCCCEeeCCHHHhHHHHHHHHHHHHHHHH
Confidence            3446789999996 89999999999999999999999999999986544

>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens}

Probab=98.86  E-value=1.9e-09  Score=77.32  Aligned_cols=46  Identities=35%  Similarity=0.902  Sum_probs=41.0

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhcccCCCC
Q psy2859         324 DDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSG  370 (534)
Q Consensus       324 ~~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~~  370 (534)
                      +....|..|++. .+++|++|+.++||+++||..||..||.+|..+.
T Consensus        11 ~~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~dW~~Hk~~C~~~~   56 (60)
T 2od1_A           11 DSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTL   56 (60)
T ss_dssp             CCSSCCTTTSSC-CCEECTTTSCCEESSHHHHHHHHHHHTTTSSCSS
T ss_pred             CCCCccccCCCc-ccccCCCCCCeeecCHHHHHHHHHHHhHHHcccc
Confidence            345789999996 8899999999999999999999999999997543

>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.84  E-value=2.4e-09  Score=76.78  Aligned_cols=45  Identities=36%  Similarity=0.933  Sum_probs=40.7

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhcccCCC
Q psy2859         324 DDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARS  369 (534)
Q Consensus       324 ~~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~  369 (534)
                      +....|..|++. .+++|++|+.++||+++||..||+.||.+|..+
T Consensus        13 ~~~~~C~~C~~~-~~~~Cs~C~~v~YCs~~CQ~~~W~~Hk~~C~~~   57 (60)
T 2dj8_A           13 DSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICSGP   57 (60)
T ss_dssp             CCSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTSCCS
T ss_pred             CCCcccccCCCC-CcccCCCCCCEeeeCHHHHHHHHHHHHHHHHhc
Confidence            446789999995 799999999999999999999999999999754

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.81  E-value=4.1e-11  Score=124.93  Aligned_cols=74  Identities=26%  Similarity=0.397  Sum_probs=61.0

Q ss_pred             ccCCCCCCCcccccccccccCCCCCCCCCcccCCCCCC-CCcccCCCCCCCccCChhhHHhhHHHhHHhccccCCC
Q psy2859         398 LARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEE-NATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS  472 (534)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~~~  472 (534)
                      +|++++.+|+.+..+.+++.... ......+|..|++. ..+.+|++|++++|||++||..||..||.+|..+...
T Consensus        22 vAtr~i~~Ge~Il~e~P~~~v~~-~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~   96 (490)
T 3n71_A           22 KATKEFWAADVIFAERAYSAVVF-DSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKY   96 (490)
T ss_dssp             EESSCBCTTCEEEEECCSEEEEC-GGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccCCCCCCEEEecCCceEEec-ccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHhc
Confidence            78999999999999998764422 12335689999985 3578999999999999999999999999999866543

>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}

Probab=98.80  E-value=3.3e-09  Score=77.32  Aligned_cols=46  Identities=33%  Similarity=0.867  Sum_probs=40.9

Q ss_pred             CCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhcccCCCCC
Q psy2859         325 DTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP  371 (534)
Q Consensus       325 ~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~~~  371 (534)
                      ....|..|++. .++.|++|+.++||+++||..||+.||.+|..+..
T Consensus        16 ~~~~C~~C~~~-~~~~Cs~C~~~~YCs~~CQ~~~W~~Hk~~C~~~~~   61 (64)
T 2odd_A           16 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQ   61 (64)
T ss_dssp             CSSSCTTTSSC-CCEEETTTSCCEESSHHHHHHHHHHHTTTTTSSCS
T ss_pred             CCCcCccccCC-CcccCCCCCChhhCCHHHHHHHHHHHhHHHhcccc
Confidence            35689999996 89999999999999999999999999999985443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.79  E-value=9.4e-10  Score=112.79  Aligned_cols=74  Identities=27%  Similarity=0.419  Sum_probs=62.3

Q ss_pred             ccCCCCCCCcccccccccccCCCCCCCCCcccCCCCCC-CCcccCCCCCCCccCChhhHHhhHHHhHHhccccCCC
Q psy2859         398 LARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEE-NATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS  472 (534)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~~~  472 (534)
                      +|++++.+|+.+..+.|++..+.. ......|..|++. ..+.+|++|++++|||++||+.||..||.+|..+...
T Consensus        22 ~A~r~i~~Ge~Il~e~P~a~~~~~-~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~~   96 (433)
T 3qww_A           22 RALRPFHVGDLLFSCPAYACVLTV-GERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVL   96 (433)
T ss_dssp             EESSCBCTTCEEEEEECSEEEECG-GGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHHS
T ss_pred             EECCCCCCCCEEEecCCceEEecc-cccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHHh
Confidence            788999999999999888766432 2335789999986 4679999999999999999999999999999876544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.77  E-value=2.2e-09  Score=110.15  Aligned_cols=74  Identities=23%  Similarity=0.442  Sum_probs=62.8

Q ss_pred             ccCCCCCCCcccccccccccCCCCCCCCCcccCCCCCC-CCcccCCCCCCCccCChhhHHhhHHHhHHhccccCCC
Q psy2859         398 LARSDPTPGFALSVLTSAINGHRGFADDTTPCVTCGEE-NATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGPS  472 (534)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~C~~~-~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~~~~  472 (534)
                      +|++++.+|+.+..+.|++.++.. ......|..|++. ..+.+|++|++++|||++||+.||+.||.+|..+...
T Consensus        20 ~Atr~i~~Ge~Il~e~P~~~~~~~-~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~~   94 (429)
T 3qwp_A           20 RAVTPLRPGELLFRSDPLAYTVCK-GSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSC   94 (429)
T ss_dssp             EESSCBCTTCEEEEECCSEEEECG-GGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHHT
T ss_pred             EeCCCCCCCCEEEecCCceeeecc-ccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHhc
Confidence            789999999999999998887543 2235689999985 4678999999999999999999999999999866543

>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1

Probab=98.70  E-value=1e-08  Score=71.41  Aligned_cols=41  Identities=39%  Similarity=0.989  Sum_probs=37.3

Q ss_pred             CCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhcccC
Q psy2859         326 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECA  367 (534)
Q Consensus       326 ~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~  367 (534)
                      ...|..|++. .++.|++|+.+.||+++||..+|+.|+.+|.
T Consensus         9 ~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C~   49 (52)
T 2jw6_A            9 EQSCVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHICG   49 (52)
T ss_dssp             --CCSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTTT
T ss_pred             CCcCCCCCCC-CcCcCCCCCCEeecCHHHHHHHHHHHCHHHc
Confidence            4679999996 8999999999999999999999999999997

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.55  E-value=3.1e-05  Score=79.14  Aligned_cols=46  Identities=37%  Similarity=0.821  Sum_probs=40.7

Q ss_pred             CCcCCCCCCC-CCCCCCCCCCceeeCChhHHHHhhhhhhcccCCCCC
Q psy2859         326 TTPCVTCGEE-NATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP  371 (534)
Q Consensus       326 ~~~C~~c~~~-~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~~~  371 (534)
                      ...|..|++. ..+..|++|+.++|||++||..+|+.||.+|..+..
T Consensus        49 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~l~~   95 (433)
T 3qww_A           49 GHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVV   95 (433)
T ss_dssp             TTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHHTTTHHHHHH
T ss_pred             CCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHHHHHHHHHHH
Confidence            5689999986 368999999999999999999999999999985544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.47  E-value=4e-05  Score=78.42  Aligned_cols=46  Identities=28%  Similarity=0.751  Sum_probs=40.4

Q ss_pred             CCcCCCCCCC-CCCCCCCCCCceeeCChhHHHHhhhhhhcccCCCCC
Q psy2859         326 TTPCVTCGEE-NATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP  371 (534)
Q Consensus       326 ~~~C~~c~~~-~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~~~  371 (534)
                      ...|..|++. ..+..|++|+.+.|||++||+.+|+.||.+|..+..
T Consensus        47 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~   93 (429)
T 3qwp_A           47 GVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKS   93 (429)
T ss_dssp             TTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHHHHHHHHHH
T ss_pred             CCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhHHhhhhHHh
Confidence            5689999985 368899999999999999999999999999985443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.33  E-value=7.9e-05  Score=77.44  Aligned_cols=46  Identities=39%  Similarity=0.895  Sum_probs=40.1

Q ss_pred             CCcCCCCCCC-CCCCCCCCCCceeeCChhHHHHhhhhhhcccCCCCC
Q psy2859         326 TTPCVTCGEE-NATKKCAKCKTTRYCDRECQRLHWFIHKKECARSGP  371 (534)
Q Consensus       326 ~~~C~~c~~~-~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~~~~~  371 (534)
                      ...|..|++. ..+..|++|+.+.|||++||..+|+.||.+|..+..
T Consensus        49 ~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk~eC~~~~~   95 (490)
T 3n71_A           49 NFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKK   95 (490)
T ss_dssp             TTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhHHHHHhHHHHh
Confidence            5689999885 368899999999999999999999999999975433

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.83  E-value=0.0016  Score=44.73  Aligned_cols=38  Identities=34%  Similarity=0.890  Sum_probs=31.6

Q ss_pred             CcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhcccc
Q psy2859         426 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECARS  469 (534)
Q Consensus       426 ~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~~~  469 (534)
                      ...|..|+. ....+|.+|... |||-.|    |+.||..|...
T Consensus        12 ~~~C~vC~~-~~kY~CPrC~~~-yCSl~C----~k~Hk~~C~~~   49 (56)
T 2yqq_A           12 TVVCVICLE-KPKYRCPACRVP-YCSVVC----FRKHKEQCNPE   49 (56)
T ss_dssp             CCCCTTTCS-CCSEECTTTCCE-ESSHHH----HHHHHHHCCCC
T ss_pred             CCccCcCcC-CCeeeCCCCCCC-eeCHHH----HHHHHhhCcCC
Confidence            347999999 688999999965 999999    67788888754

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=93.97  E-value=0.03  Score=38.67  Aligned_cols=35  Identities=37%  Similarity=0.966  Sum_probs=27.8

Q ss_pred             cccCCCCC---CCCcccCCCCCCCccCChhhHHhhHHHhHHhcc
Q psy2859         427 TPCVTCGE---ENATKKCAKCKTTRYCDRECQRLHWFIHKKECA  467 (534)
Q Consensus       427 ~~C~~C~~---~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C~  467 (534)
                      ..|..|+.   ..+..+|.+|... |||-.|.+    .|+ +|.
T Consensus        12 ~~C~vC~~~~~~~akY~CPrC~~r-YCSl~C~k----~Hk-~Cs   49 (59)
T 1x4s_A           12 GPCGFCPAGEVQPARYTCPRCNAP-YCSLRCYR----THG-TCA   49 (59)
T ss_dssp             EEECSSCTTCCEEECEECTTTCCE-ESSHHHHH----HHC-CGG
T ss_pred             CcCcCCCCCcCCCccccCcCCCCC-ccChHHHH----HHh-HhC
Confidence            47999995   3467899999965 99999976    465 675

>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.05  E-value=0.18  Score=34.59  Aligned_cols=38  Identities=37%  Similarity=0.878  Sum_probs=28.9

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhcccC
Q psy2859         324 DDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKECA  367 (534)
Q Consensus       324 ~~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c~  367 (534)
                      ....+|..|+. ....+|.+|. +.|||..|-+.    |+..|.
T Consensus        10 ~~~~~C~vC~~-~~kY~CPrC~-~~yCSl~C~k~----Hk~~C~   47 (56)
T 2yqq_A           10 CSTVVCVICLE-KPKYRCPACR-VPYCSVVCFRK----HKEQCN   47 (56)
T ss_dssp             CCCCCCTTTCS-CCSEECTTTC-CEESSHHHHHH----HHHHCC
T ss_pred             CCCCccCcCcC-CCeeeCCCCC-CCeeCHHHHHH----HHhhCc
Confidence            33457999999 6888999998 66999887655    444475

>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2

Probab=85.75  E-value=0.3  Score=33.66  Aligned_cols=32  Identities=34%  Similarity=0.913  Sum_probs=25.3

Q ss_pred             CCcCCCCCC---CCCCCCCCCCCceeeCChhHHHHh
Q psy2859         326 TTPCVTCGE---ENATKKCAKCKTTRYCDRECQRLH  358 (534)
Q Consensus       326 ~~~C~~c~~---~~~~~~c~~c~~~~yc~~~cq~~~  358 (534)
                      ...|..|+.   ..+..+|.+|. +.|||..|.+.|
T Consensus        11 ~~~C~vC~~~~~~~akY~CPrC~-~rYCSl~C~k~H   45 (59)
T 1x4s_A           11 AGPCGFCPAGEVQPARYTCPRCN-APYCSLRCYRTH   45 (59)
T ss_dssp             CEEECSSCTTCCEEECEECTTTC-CEESSHHHHHHH
T ss_pred             CCcCcCCCCCcCCCccccCcCCC-CCccChHHHHHH
Confidence            357999986   33678999998 669999998854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	534
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-17
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-12
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-14
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-08
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	1e-13
d2dj8a1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	1e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-10
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.001
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	4e-13
d2dana1	47	g.85.1.1 (A:8-54) Zinc finger MYND domain-containi	4e-13
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	5e-13
d2jw6a1	38	g.85.1.1 (A:503-540) Zinc finger MYND domain-conta	5e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-12
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-06
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-12
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	3e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-05
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-11
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-09
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-07
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	6e-08
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	5e-06
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	6e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	8e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	9e-07
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	3e-05
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	3e-06
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.002
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.001

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.9 bits (201), Expect = 2e-17
 Identities = 25/75 (33%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 41  MTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKS 100
           +TPL  A++ G+  I + LL  GA  N   +    + LH AA +G  +V   LL   AK 
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQNKAKV 59

Query: 101 YATNSVGRTASQMAA 115
            A     +T    AA
Sbjct: 60  NAKAKDDQTPLHCAA 74

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 6e-16
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 2/100 (2%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
               +  V+ LL +     ++ +    TPL  AA  G+ ++ + LL + A VN+ + +  
Sbjct: 9   FMGHLPIVKNLL-QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDD 66

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
            + LH AA  G  ++   LL   A      + G T   +A
Sbjct: 67  QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIA 106

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 8e-13
 Identities = 31/141 (21%), Positives = 51/141 (36%), Gaps = 32/141 (22%)

Query: 7   GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           G       ++     +  LL   +   +L ++ G+TPL   A +G+  +  +L+ HG  V
Sbjct: 231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMV 290

Query: 67  NSG--------------------------------RHEHGYSALHFAALSGKDDVCACLL 94
           ++                                 + + GYS LH AA  G  D+   LL
Sbjct: 291 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 350

Query: 95  SAGAKSYATNSVGRTASQMAA 115
             GA     +S G T   +A 
Sbjct: 351 KNGASPNEVSSDGTTPLAIAK 371

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.4 bits (158), Expect = 5e-12
 Identities = 33/109 (30%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 7   GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           G       +K     V +LL E     +   ++G+TPL  A +  N  I +LLL  G   
Sbjct: 132 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 191

Query: 67  NSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           +S    +GY+ LH AA   + +V   LL  G  + A +  G T   +AA
Sbjct: 192 HS-PAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA 239

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 24  KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL 83
           K L +H+  V+   + G +PL  AA +G+  I  LLL +GA  N      G + L  A  
Sbjct: 314 KFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE-VSSDGTTPLAIAKR 372

Query: 84  SGKDDVCACL 93
            G   V   L
Sbjct: 373 LGYISVTDVL 382

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 4e-11
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 1/83 (1%)

Query: 28  EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD 87
           E +       + G TPL  AA  G  ++ +LLL+  A  N+   ++G + LH A      
Sbjct: 120 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA-AGKNGLTPLHVAVHHNNL 178

Query: 88  DVCACLLSAGAKSYATNSVGRTA 110
           D+   LL  G   ++    G T 
Sbjct: 179 DIVKLLLPRGGSPHSPAWNGYTP 201

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 5e-07
 Identities = 39/162 (24%), Positives = 58/162 (35%), Gaps = 11/162 (6%)

Query: 6   EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
            G         ++  ++ KLL            +G TPL  AA +   ++ + LL +G  
Sbjct: 164 NGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGS 223

Query: 66  VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNY 125
            N+     G + LH AA  G  ++ A LLS  A     N  G T   + A      + + 
Sbjct: 224 ANA-ESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 282

Query: 126 IAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVR 167
           + K  V      R   T          PLH      NI  V+
Sbjct: 283 LIKHGVMVDATTRMGYT----------PLHVASHYGNIKLVK 314

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.3 bits (176), Expect = 1e-14
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 2/103 (1%)

Query: 5   MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-G 63
                       +D++ +  LL +H   V++  E G TPL  A  K +  + Q LL+   
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEH 243

Query: 64  ADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSV 106
            ++N      G +AL  A       +   L   GA +   + V
Sbjct: 244 IEIND-TDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDLV 285

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (147), Expect = 6e-11
 Identities = 34/107 (31%), Positives = 47/107 (43%), Gaps = 6/107 (5%)

Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN----KQICQLLLDHGADVNSG 69
             K  ++ ++ LL E    V+  D  G   L HA    +    + I  LLLDHGADVN  
Sbjct: 156 AEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV- 214

Query: 70  RHEHGYSALHFAALSGKDDVCACLLS-AGAKSYATNSVGRTASQMAA 115
           R E G + L  A       +   LL     +   T+S G+TA  +A 
Sbjct: 215 RGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAV 261

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 2e-10
 Identities = 23/77 (29%), Positives = 33/77 (42%)

Query: 40  GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAK 99
               L  A    +  + Q LL+ GA+VN    E G++ LH A    ++D+   LL  GA 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD 64

Query: 100 SYATNSVGRTASQMAAF 116
                  G T   +AA 
Sbjct: 65  PVLRKKNGATPFLLAAI 81

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (129), Expect = 1e-08
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 4/90 (4%)

Query: 29  HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH-GADVNSGRHEHGYSALHFAALSGK- 86
            K   +   + G T L  AA KG+ ++ ++LLD  GADVN+  +    + +H    S   
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 87  --DDVCACLLSAGAKSYATNSVGRTASQMA 114
             + +   LL  GA        G+T   +A
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILA 226

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 4e-08
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 4/169 (2%)

Query: 5   MEGNE-IFDFISKNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDH 62
           +E N  +   +   D+D VQ+LL E    V+  + E G TPL +A     + I +LLL H
Sbjct: 3   VEDNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 63  GADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVI 122
           GAD    +          AA++G   +    LS GA     +  G TA   AA       
Sbjct: 62  GADPVLRKKNGATPF-LLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120

Query: 123 NNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALN 171
             ++ K   +  +  +  E   +L    A  L     + ++  +++ L+
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD 169

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 1e-13
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 323 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC 366
            D +  C  CG + A++ C+ C T RYC   CQ   W  H   C
Sbjct: 5   EDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHIC 47

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.1 bits (153), Expect = 1e-13
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 1/44 (2%)

Query: 423 ADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC 466
            D +  C  CG + A++ C+ C T RYC   CQ   W  H   C
Sbjct: 5   EDSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHIC 47

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.8 bits (164), Expect = 4e-13
 Identities = 30/116 (25%), Positives = 55/116 (47%), Gaps = 1/116 (0%)

Query: 16  KNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY 75
           +  + + ++ L+   +    + + G T L  AA KG  ++ +LL+    DVN  +   G+
Sbjct: 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI-KDYDGW 233

Query: 76  SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEV 131
           + LH AA  GK++ C  L+       A N VG+TA  +A   ++  +     K  +
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 20/90 (22%), Positives = 44/90 (48%), Gaps = 6/90 (6%)

Query: 10  IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
           +    +K   + ++ L  + +  V++ D  G TPL  AA+ G ++ C++L+++  D+ + 
Sbjct: 203 LHVAAAKGYTEVLKLL-IQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA- 260

Query: 70  RHEHGYSALHFAALSGKDDVCACLLSAGAK 99
            ++ G +A   A     +D+   L     K
Sbjct: 261 VNKVGQTAFDVAD----EDILGYLEELQKK 286

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 4/85 (4%)

Query: 8  NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
          NE       ++ D    ++   K +V             A   G+ +    LL+ GAD+N
Sbjct: 11 NEQLKRWIGSETDLEPPVVKRKKTKVKF---DDGAVFLAACSSGDTEEVLRLLERGADIN 67

Query: 68 SGRHEHGYSALHFAALSGKDDVCAC 92
             +  G +ALH A +    D+   
Sbjct: 68 Y-ANVDGLTALHQACIDDNVDMVKF 91

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 0.001
 Identities = 30/101 (29%), Positives = 46/101 (45%), Gaps = 2/101 (1%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
           S  D + V +LL E    ++  +  G+T L  A    N  + + L+++G    +     G
Sbjct: 49  SSGDTEEVLRLL-ERGADINYANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEG 106

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           +  LH AA  G  D+   L+S GA   A NS G T   +A 
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAE 147

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 4e-13
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 320 RGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC 366
              A +   C  C  E A+K+C++C+   YC RECQ  HW  H K C
Sbjct: 2   EAVAPERPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTC 47

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 4e-13
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 420 RGFADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC 466
              A +   C  C  E A+K+C++C+   YC RECQ  HW  H K C
Sbjct: 2   EAVAPERPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTC 47

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 5e-13
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 329 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC 366
           CV CG E A  +C  C    YC   CQR  W  H+  C
Sbjct: 2   CVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHIC 38

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Length = 38

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (147), Expect = 5e-13
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 429 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC 466
           CV CG E A  +C  C    YC   CQR  W  H+  C
Sbjct: 2   CVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHIC 38

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 66.8 bits (162), Expect = 1e-12
 Identities = 20/119 (16%), Positives = 32/119 (26%), Gaps = 17/119 (14%)

Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEH-----------GMTPLQHAAYKGNK---QICQLL 59
               +++ V++LL  +    +   +                   AA  G         LL
Sbjct: 53  PGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLL 112

Query: 60  LDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATN--SVGRTASQMAAF 116
           L     V        Y A   AA +G   V   L             +    A ++AA 
Sbjct: 113 LTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE 170

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 61.1 bits (147), Expect = 1e-10
 Identities = 14/83 (16%), Positives = 21/83 (25%), Gaps = 1/83 (1%)

Query: 18  DIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG-RHEHGYS 76
              +   LL      V +         + AA  G+  +   L +              Y 
Sbjct: 104 SALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH 163

Query: 77  ALHFAALSGKDDVCACLLSAGAK 99
           A   AA +G   V   L      
Sbjct: 164 AFRLAAENGHLHVLNRLCELAPT 186

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 12/67 (17%), Positives = 16/67 (23%), Gaps = 4/67 (5%)

Query: 33  VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH----GYSALHFAALSGKDD 88
             L   + +  L     +      + LL                     L  A   G   
Sbjct: 272 ECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG 331

Query: 89  VCACLLS 95
            CA LLS
Sbjct: 332 ACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.6 bits (99), Expect = 7e-05
 Identities = 12/85 (14%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 16  KNDIDNVQKLLSEH-KLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG--RHE 72
              +  + +L        + +         + AA  G+  +   L +      +   + E
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAE 195

Query: 73  HGYSALHFAALSGKDDVCACLLSAG 97
           + Y+    A   G  +V   LL   
Sbjct: 196 NYYAFRWAAVGRGHHNVINFLLDCP 220

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 4/53 (7%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEH----GMTPLQHAAYKGNKQICQLLLDHG 63
            +  +D+++ LLS   ++               L+ A   GN+  C LLL   
Sbjct: 288 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP 340

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 0.002
 Identities = 16/115 (13%), Positives = 30/115 (26%), Gaps = 15/115 (13%)

Query: 5   MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLY---DEHGMTPLQHAAYKGNKQICQLLLD 61
            E    F   ++N   +V   L E            E+       A  +G+  +   LLD
Sbjct: 159 AENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLD 218

Query: 62  HGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
               +          A       G+  V   +     +          A +++  
Sbjct: 219 CPVMLA--------YAEIHEFEYGEKYVNPFIARHVNR----LKEMHDAFKLSNP 261

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 63.6 bits (153), Expect = 7e-12
 Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 10  IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG 69
           +      +++  V+ L+ E     D  DE G TP+  AA +G  ++   L+  GA V + 
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA- 249

Query: 70  RHEHGYSALHFAALSGKDDVCACLL 94
                ++A   A  +   ++     
Sbjct: 250 VDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.2 bits (139), Expect = 5e-10
 Identities = 26/111 (23%), Positives = 43/111 (38%)

Query: 5   MEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGA 64
                     +K  ++   K+  +   R D     G T L +AA   N  I + L+    
Sbjct: 152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 211

Query: 65  DVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
                + E G + +  AA  G+ +V   L+  GA   A ++   TA Q+A 
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQ 262

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 52.4 bits (124), Expect = 4e-08
 Identities = 15/81 (18%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 42  TPLQ-HAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLL------ 94
           +P++ H    G+  I + +     ++   RH    + LH+ A +   +    L+      
Sbjct: 2   SPIKLHTEAAGSYAITEPITRESVNIIDPRH--NRTVLHWIASNSSAEKSEDLIVHEAKE 59

Query: 95  --SAGAKSYATNSVGRTASQM 113
             +AGA   A +    T   +
Sbjct: 60  CIAAGADVNAMDCDENTPLML 80

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.0 bits (102), Expect = 2e-05
 Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDH--------GAD 65
                  + + ++   + + +   H  T L   A   + +  + L+ H        GAD
Sbjct: 8  TEAAGSYAITEPITRESVNI-IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 66 VNSGRHEHGYSALHF 80
          VN+       + L  
Sbjct: 67 VNA-MDCDENTPLML 80

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.9 bits (154), Expect = 9e-12
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 25  LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA 82
           L       ++  D +G T L  AA  GN  I   LLD+GAD     ++ G   + F A
Sbjct: 244 LKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFI-ANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 3/112 (2%)

Query: 7   GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADV 66
           G       +K  +D +   + + + R      +      +      K      LD    +
Sbjct: 189 GMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII 248

Query: 67  NSG---RHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            +    +  +G + L+ AA  G   +   LL  GA  +  N  G       A
Sbjct: 249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.4 bits (124), Expect = 5e-08
 Identities = 14/102 (13%), Positives = 37/102 (36%), Gaps = 1/102 (0%)

Query: 14  ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN-KQICQLLLDHGADVNSGRHE 72
           +   +I  +   L+      +          QH ++    +++     +   ++N    E
Sbjct: 46  LLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDE 105

Query: 73  HGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA 114
           HG + LH+       ++   L+  G+     +++G +    A
Sbjct: 106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKA 147

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.6 bits (148), Expect = 3e-11
 Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 2/141 (1%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLDHGADVNS--GRHEHGYSALHFAALSGKDDVCACLL 94
            E G T L  A    ++     LL   A       +++ G +ALH AA+ G+      L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 95  SAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPL 154
           +AGA        G TA  +A  V        + +    +         T   D       
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSH 125

Query: 155 HTFIMQVNIHPVRVALNLLPS 175
               +    +P          
Sbjct: 126 APAAVDSQPNPENEEEPRDED 146

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.3 bits (147), Expect = 3e-11
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 36  YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
               G TPL  A       + +LLL  GAD  + R   G + L  A L     +   L +
Sbjct: 188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTA-RMYGGRTPLGSALLRPNPILARLLRA 246

Query: 96  AGAK 99
            GA 
Sbjct: 247 HGAP 250

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (123), Expect = 4e-08
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 8   NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
             +   +       ++ LL +           G TPL  A  + N  + +LL  HGA   
Sbjct: 194 TPLHLAVEAQAASVLELLL-KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 29/102 (28%), Positives = 44/102 (43%)

Query: 15  SKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG 74
             N  +  +    + +L+++  +  G TPL  A    + ++ +LL D GAD+N      G
Sbjct: 133 QPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCG 192

Query: 75  YSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAF 116
            + LH A  +    V   LL AGA   A    GRT    A  
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALL 234

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 6e-05
 Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 3/88 (3%)

Query: 14  ISKNDIDNVQKLLSE--HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH 71
           +       +  LL        +DL ++ G T L  AA  G     + L   GA V     
Sbjct: 17  VIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAER 76

Query: 72  EHGYSALHFAALSGKDDVCACLLSAGAK 99
               +  H A           LL     
Sbjct: 77  GGHTAL-HLACRVRAHTCACVLLQPRPS 103

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 6e-11
 Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 34/134 (25%)

Query: 10  IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG------------------ 51
           + +      ++ +++ +   K      D+   T L  A   G                  
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 52  ---------------NKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA 96
                            +I + LL  GA VN+  +++G + LH+AA   + ++   LL  
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEG 125

Query: 97  GAKSYATNSVGRTA 110
           GA   A +    TA
Sbjct: 126 GANPDAKDHYEATA 139

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 5e-10
 Identities = 30/148 (20%), Positives = 53/148 (35%), Gaps = 34/148 (22%)

Query: 1   MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
                 G       +    D + K L     +V+  +++G TPL +AA K   +I  +LL
Sbjct: 64  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 123

Query: 61  DHGADVNSGRHEHGYSALHFAALS---------------------------------GKD 87
           + GA+ ++ +  +  +A+H AA                                    + 
Sbjct: 124 EGGANPDA-KDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERV 182

Query: 88  DVCACLLSAGAKSYATNSVGRTASQMAA 115
           +    L+S GA  Y  N   +T  Q+A 
Sbjct: 183 EEAKLLVSQGASIYIENKEEKTPLQVAK 210

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 2e-09
 Identities = 15/89 (16%), Positives = 32/89 (35%), Gaps = 2/89 (2%)

Query: 6   EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
                    +      +  +L  +K   ++ D  G TPL  A  +   +  +LL+  GA 
Sbjct: 135 YEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS 194

Query: 66  VNSGRHEHGYSALHFAALSGKDDVCACLL 94
           +    ++   + L  A   G   +   ++
Sbjct: 195 IYI-ENKEEKTPLQVAK-GGLGLILKRMV 221

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 0.001
 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 6   EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLD 61
           EGN         +     KLL      + + ++   TPL   A  G   I + +++
Sbjct: 168 EGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPL-QVAKGGLGLILKRMVE 222

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 3e-10
 Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 1/89 (1%)

Query: 1   MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
                 G        +N+  ++ +LL +H   V+     G + L  A+ +G   + + L+
Sbjct: 138 AVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLV 197

Query: 61  DHGADVNSGRHEHGYSALHFAALSGKDDV 89
             GAD +  ++ H  + L  A      D+
Sbjct: 198 RSGADSSL-KNCHNDTPLMVARSRRVIDI 225

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 5/59 (8%)

Query: 38 EHGMTPLQHAAYKGNKQICQLLLD----HGADVNSGRHEHGYSALHFAALSGKDDVCAC 92
          E G TPL  A  +GN      L++     G +++   +    + LH A ++    V   
Sbjct: 1  EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRL 58

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 2e-06
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 1/108 (0%)

Query: 8   NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVN 67
             +   ++    + VQ LL        +  + G +PL HA    +  + QLLL HG    
Sbjct: 112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHG-ANV 170

Query: 68  SGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
           + +   G SALH A+  G   +   L+ +GA S   N    T   +A 
Sbjct: 171 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVAR 218

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 15/137 (10%), Positives = 38/137 (27%), Gaps = 40/137 (29%)

Query: 8   NEIFDFISKNDIDNVQKLLSE-----HKLRVDLYDEHGMTPLQHAAY---KGNKQICQLL 59
           + + + +   DI  + +  ++      K+ +    E   T L  A     + +  I   L
Sbjct: 8   HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFL 67

Query: 60  LDHGADVNSGRH--------------------------------EHGYSALHFAALSGKD 87
           + +  +++                                    E G + L  A     +
Sbjct: 68  VQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHE 127

Query: 88  DVCACLLSAGAKSYATN 104
                L  A +  + ++
Sbjct: 128 HCEELLTQALSGRFNSH 144

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.3 bits (98), Expect = 3e-05
 Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)

Query: 34  DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
           ++ +E G TPL  A    ++   +LL    +   +  H H
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQALSGRFN-SHVH 146

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 1e-07
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 53 KQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
           Q+   LL  GA++N+   + G ++LH AA   + D    L
Sbjct: 2  AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 34  DLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
           D  D+   TPL  AA +G+ +  + LLD+ A+               A+     D+   L
Sbjct: 150 DAQDDKDETPLFLAAREGSYEASKALLDNFANREI-TDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 45.2 bits (105), Expect = 5e-06
 Identities = 24/115 (20%), Positives = 46/115 (40%), Gaps = 1/115 (0%)

Query: 1   MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
            +   +G       ++  I+ + + L      ++  D  G T L  AA   N +   +LL
Sbjct: 84  NARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 143

Query: 61  DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAA 115
            H A+ ++ + +   + L  AA  G  +    LL   A    T+ + R    +A+
Sbjct: 144 MHHANRDA-QDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVAS 197

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 42.1 bits (97), Expect = 6e-05
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 22  VQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLL 59
             K L ++    ++ D     P   A+ + +  I +LL
Sbjct: 171 ASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.2 bits (118), Expect = 1e-07
 Identities = 12/56 (21%), Positives = 21/56 (37%)

Query: 42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAG 97
           PL  A  +      Q LL     +   + + G   LH++      ++ + LLS  
Sbjct: 2  YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.3 bits (113), Expect = 6e-07
 Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 3/56 (5%)

Query: 10  IFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD 65
           +F  +++   D    L+ ++    DL D  G      A    N+Q+ +  L++  D
Sbjct: 176 LFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 8e-07
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 37  DEHGMTPLQHAAYKGNKQICQLLLD-HGADVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
           D+ G TPL HA  +G+     LL++ +GA+ +      G  A   A     + V    L+
Sbjct: 169 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL-VDNKGAKAEDVAL---NEQVKKFFLN 224

Query: 96  AGA 98
              
Sbjct: 225 NVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 26/116 (22%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 1   MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
             I  +G              V + L E+   V + D+    PL  AA  G+ ++ +LL 
Sbjct: 99  NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC 158

Query: 61  DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSA-GAKSYATNSVGRTASQMAA 115
             G    + + + G++ L  A   G  D    L+   GA+    ++ G  A  +A 
Sbjct: 159 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL 214

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 23/62 (37%)

Query: 14 ISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEH 73
            +N+   VQ+LL      +   D+ G  PL  +      +I   LL    +VN   +  
Sbjct: 8  CMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPD 67

Query: 74 GY 75
            
Sbjct: 68 DS 69

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 9e-07
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 17  NDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYS 76
             +  V+ L+S           +G T L  A    N  +  LLL  GADVN      GYS
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR-VTYQGYS 180

Query: 77  ALHFAALSGKDDVCACLLSAGAK 99
                       +   L     +
Sbjct: 181 PYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 3e-05
 Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 5/46 (10%)

Query: 40 GMTPLQHAAYKGN----KQICQLLLDHGADVNSGRHEHGYSALHFA 81
          G + L  A          ++ + +    A +N  ++    + LH A
Sbjct: 2  GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 25/80 (31%), Positives = 37/80 (46%)

Query: 36  YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLS 95
            + +G T L  A+  G   I +LL+  GADVN+    +G +ALH A      D+ + LL 
Sbjct: 107 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 166

Query: 96  AGAKSYATNSVGRTASQMAA 115
            GA        G +  Q+  
Sbjct: 167 CGADVNRVTYQGYSPYQLTW 186

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 3e-06
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 36  YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSA--LHFAALSGKDDVCACL 93
            D  G TPL  AA   N Q+C+ L++ GA V +  +    +A         G       L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 94  LSAGAK 99
                K
Sbjct: 123 YGVQEK 128

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.003
 Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 33/108 (30%)

Query: 41  MTPLQHAAYKGNKQICQLLLDHGADVNSGRHE---------------------------- 72
           +  L  ++ +G   + Q ++    D +    E                            
Sbjct: 2   LALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN 61

Query: 73  ----HGYSALHFAALSGKDDVCACLLSAGAKSYA-TNSVGRTASQMAA 115
                G++ LH AA      VC  L+ +GA  +A T S  +TA+    
Sbjct: 62  AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCE 109

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 33  VDLYDEHGMTPLQHAAYKGNKQICQLLLDH 62
           +   D  G+TPL+ A  +G + +  +L  H
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQGH 155

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (97), Expect = 3e-05
 Identities = 7/35 (20%), Positives = 12/35 (34%)

Query: 29  HKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHG 63
               V   +  G T    A   G  ++  L+  +G
Sbjct: 122 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 3e-04
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 42 TPLQHAAYKGNKQICQLLLDHGADVNS 68
            L  AA +G+ +    LL +  +VN+
Sbjct: 3  NELASAAARGDLEQLTSLLQNNVNVNA 29

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 22/97 (22%), Positives = 44/97 (45%)

Query: 1   MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLL 60
                 G  +    ++    +  + L E +  V++ D  G  PL  AA +G+ ++ + L+
Sbjct: 60  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLV 119

Query: 61  DHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAG 97
            H A     R+  G +A   A L G+++V + + + G
Sbjct: 120 KHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.6 bits (93), Expect = 1e-04
 Identities = 7/30 (23%), Positives = 12/30 (40%)

Query: 42 TPLQHAAYKGNKQICQLLLDHGADVNSGRH 71
            L  AA  G     ++L+ +GA   +   
Sbjct: 4  KKLLEAARAGQDDEVRILMANGAPFTTDWL 33

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.7 bits (88), Expect = 5e-04
 Identities = 9/59 (15%), Positives = 24/59 (40%)

Query: 1   MSIPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLL 59
            +  M       + ++++   V +LL ++   V    +   T    +   GN+ + ++L
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 15/58 (25%), Positives = 31/58 (53%), Gaps = 1/58 (1%)

Query: 36  YDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACL 93
            D   MT L  A    ++++ +LL+ +GADV++ + +   +A   +  +G +D+   L
Sbjct: 96  KDMLKMTALHWATEHNHQEVVELLIKYGADVHT-QSKFCKTAFDISIDNGNEDLAEIL 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	534
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.91
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.91
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.9
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.89
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.88
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.87
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.86
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.86
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.84
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.84
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.82
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.81
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.8
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.8
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.78
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.78
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.77
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	99.39
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	99.34
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	99.32
d2dana1	47	Zinc finger MYND domain-containing protein 10, ZMY	99.18
d2jw6a1	38	Zinc finger MYND domain-containing protein 2, MTG8	99.11
d2dj8a1	47	Zinc finger MYND domain-containing protein 2, MTG8	99.09
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	92.17
d1x4sa1	46	Zinc finger HIT domain containing protein 2, ZNHIT	81.45

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.6e-27  Score=208.15  Aligned_cols=154  Identities=23%  Similarity=0.288  Sum_probs=144.3

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      +|.+|+.||..|+.+.|+.||.+.++++|..|..|+||||+|+ .|+.+++++||+++++++. .+..|.+||++|+..+
T Consensus         2 ~g~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~~~~~~   79 (156)
T d1bd8a_           2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV-QDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-ccccccccccccccccccc-cccccccccccccccc
Confidence            5789999999999999999999999999999999999999987 5889999999999999999 8899999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++++++|+++|.+|..|.||||+|+..|+.+++++|+ .|++++          ..|..|.||||+|+..|+.++
T Consensus        80 ~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~----------~~d~~G~TpL~~A~~~g~~~i  148 (156)
T d1bd8a_          80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLH----------RRDARGLTPLELALQRGAQDL  148 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTT----------CCCTTSCCHHHHHHHSCCHHH
T ss_pred             cccccccccccccccccccCCCCeeecccccccccccccccc-cccccc----------ccCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999887 577763          347789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      +++|+++
T Consensus       149 v~~Ll~h  155 (156)
T d1bd8a_         149 VDILQGH  155 (156)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9999875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.1e-26  Score=216.84  Aligned_cols=125  Identities=25%  Similarity=0.352  Sum_probs=87.4

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD   87 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~   87 (534)
                      .-++.+|..|+.+.|+.+|...+.+++.+|..|+||||+||..|+.+++++|+..+.+... .+..+.++++.|+..|+.
T Consensus         5 ~~~~~~a~~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~   83 (223)
T d1uoha_           5 LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRD   83 (223)
T ss_dssp             SHHHHHHHTTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCTTCCCHHHHHHHHTCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc-cccccccccccccccccc
Confidence            4566789999999999999998999999999999999999998887777776666555554 444555555555555555


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCce
Q psy2859          88 DVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDY  133 (534)
Q Consensus        88 ~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~  133 (534)
                      +++++|+++|++++.+|..|.||||+|+..+..+++++|++.|+++
T Consensus        84 ~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~  129 (223)
T d1uoha_          84 EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP  129 (223)
T ss_dssp             HHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             chhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCC
Confidence            5555555555555555555555555555555555555555555554

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=5e-27  Score=223.32  Aligned_cols=183  Identities=20%  Similarity=0.177  Sum_probs=152.7

Q ss_pred             CCCCc-hhHHHHHHhCCHHHHHHHHHhCCCC---CccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHH
Q psy2859           3 IPMEG-NEIFDFISKNDIDNVQKLLSEHKLR---VDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSAL   78 (534)
Q Consensus         3 ~~~~~-~~l~~aa~~g~~~~v~~lL~~~g~~---~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpL   78 (534)
                      ++.+| ++||+||..|+...+ ++|+++|++   +|..|..|.||||+|+..|+.+++++|+++|++++. .|.+|.|||
T Consensus         5 i~~~G~t~Lh~A~~~~~~~~v-~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~-~d~~g~tpL   82 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHEPFL-DFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTAL   82 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHH-HHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCHH
T ss_pred             CCcCCCCHHHHHHHcCCHHHH-HHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccc-cccccchhh
Confidence            45665 555555566666555 455556877   667789999999999999999999999999999999 899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCC-----------------------------------------------CCCCCCCCCCHH
Q psy2859          79 HFAALSGKDDVCACLLSAGAK-----------------------------------------------SYATNSVGRTAS  111 (534)
Q Consensus        79 h~A~~~g~~~iv~~Ll~~ga~-----------------------------------------------~~~~~~~G~TpL  111 (534)
                      |+|+..|+.+++++|++.+..                                               ++.+|..|.|||
T Consensus        83 ~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpL  162 (255)
T d1oy3d_          83 HLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPL  162 (255)
T ss_dssp             HHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCHH
T ss_pred             hhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccc
Confidence            999999999999999765321                                               234567799999


Q ss_pred             HHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCccccc
Q psy2859         112 QMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISH  179 (534)
Q Consensus       112 ~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~  179 (534)
                      |+|+..+..+++++|++.+++.+.         ..+..|.||||+|+..|+.++|++|+++            +|++.+.
T Consensus       163 h~A~~~~~~~~v~~Ll~~~~~~~~---------~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~  233 (255)
T d1oy3d_         163 HVAVIHKDAEMVRLLRDAGADLNK---------PEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSAL  233 (255)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTC---------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccccccccccchhcccccccc---------cccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            999999999999999999988652         2356799999999999999999999986            6888899


Q ss_pred             ccchHHHHHHHHHhhhh
Q psy2859         180 LPSVRKVVSLLSEKQMK  196 (534)
Q Consensus       180 ~~~~~~~~~~l~~~~~~  196 (534)
                      ..+..++++.|.+.+..
T Consensus       234 ~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         234 LRPNPILARLLRAHGAP  250 (255)
T ss_dssp             TSSCHHHHHHHHHTTCC
T ss_pred             HCCCHHHHHHHHHcCCC
Confidence            99999999999876553

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=196.24  Aligned_cols=153  Identities=21%  Similarity=0.231  Sum_probs=141.7

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      |++||.||..|+.+.|+.||.. |+++|.+|..|+||||+|+ .|+.+++++|+++|++++. .+..|.+||+.++..++
T Consensus         2 ~~~Lh~Aa~~g~~~~v~~Ll~~-g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~-~~~~~~~~l~~~~~~~~   78 (156)
T d1ihba_           2 GNELASAAARGDLEQLTSLLQN-NVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGF   78 (156)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTS-CCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTC
T ss_pred             hHHHHHHHHcCCHHHHHHHHHC-CCCcCccCCcccccccccc-ccccccccccccccccccc-ccccCcccccccccccc
Confidence            5889999999999988887765 9999999999999999886 7999999999999999999 89999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCC-ceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEV-DYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      ..+++.|+..+.+++..+..|.+|||+|+..+..+++++|++++. +.          ...|..|.||||+|+..++.++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~----------~~~d~~g~TpL~~A~~~~~~~i  148 (156)
T d1ihba_          79 LDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNV----------GHRNHKGDTACDLARLYGRNEV  148 (156)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCT----------TCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccc----------cccCCCCCCHHHHHHHcCCHHH
Confidence            999999999999999999999999999999999999999998886 43          3457789999999999999999


Q ss_pred             HHHHHhh
Q psy2859         166 VRVALNL  172 (534)
Q Consensus       166 v~~Ll~~  172 (534)
                      |++|+++
T Consensus       149 v~~Ll~~  155 (156)
T d1ihba_         149 VSLMQAN  155 (156)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhc
Confidence            9999874

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.4e-25  Score=205.13  Aligned_cols=176  Identities=22%  Similarity=0.276  Sum_probs=150.2

Q ss_pred             CCCCc-hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHH
Q psy2859           3 IPMEG-NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFA   81 (534)
Q Consensus         3 ~~~~~-~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A   81 (534)
                      .|.+| ++||.||..|+.+.++.++. .+......+..+.++++.|+..|+.+++++|+++|++++. .|..|.||||+|
T Consensus        33 ~D~~G~TpLh~Aa~~g~~e~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~-~d~~g~tpL~~A  110 (223)
T d1uoha_          33 TDQDSRTALHWACSAGHTEIVEFLLQ-LGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYA  110 (223)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHH-HTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHH
T ss_pred             cCCCCCCHHHHHHHhhhhcccccccc-cccccccccccccccccccccccccchhHHHhccCceeEe-eCCCCCchhhHH
Confidence            45555 55667777777766665544 4788888888899999999999999999999999999998 899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhc
Q psy2859          82 ALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQV  161 (534)
Q Consensus        82 ~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~  161 (534)
                      +..|+.+++++|+++|++++.++..|.||||+|+..+...++++|...+.+++.          .|..|.||||.|+..|
T Consensus       111 ~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~----------~d~~g~TpL~~Aa~~g  180 (223)
T d1uoha_         111 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNI----------QDTEGNTPLHLACDEE  180 (223)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCTTCCCHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeee----------ccCCCCceeccccccC
Confidence            999999999999999999999999999999999999999999999999988743          4678999999999999


Q ss_pred             CchHHHHHHh------------hCCcccccccchHHHHHHHH
Q psy2859         162 NIHPVRVALN------------LLPSLISHLPSVRKVVSLLS  191 (534)
Q Consensus       162 ~~~~v~~Ll~------------~~p~~~~~~~~~~~~~~~l~  191 (534)
                      +.++|++|++            .+|++++. .++..+++.|.
T Consensus       181 ~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll  221 (223)
T d1uoha_         181 RVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMV  221 (223)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHH
T ss_pred             cHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhccc
Confidence            9999999982            17888774 68888888875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=4e-24  Score=199.54  Aligned_cols=154  Identities=18%  Similarity=0.158  Sum_probs=118.1

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC--CCCCCc----------
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG--RHEHGY----------   75 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~--~~~~G~----------   75 (534)
                      +|||.||..|+.+.|+.||...+.+++.+|.+|+||||+|+..|+.++|++||++|++++..  .+..|.          
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~   81 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVG   81 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHT
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccc
Confidence            68999999999999999999989999999999999999999999999999999999998742  343444          


Q ss_pred             -------------------------hHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcC
Q psy2859          76 -------------------------SALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSE  130 (534)
Q Consensus        76 -------------------------TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~  130 (534)
                                               |||+.++..++.+++++|++.|.+.+..+..|+||||+|+..+..+++++|+..+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~  161 (229)
T d1ixva_          82 NLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLG  161 (229)
T ss_dssp             CHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             ccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccc
Confidence                                     4555555555566666666666666666677777777777777777777777665


Q ss_pred             C-ceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHh
Q psy2859         131 V-DYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALN  171 (534)
Q Consensus       131 ~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~  171 (534)
                      . ++          +..|..|.||||+|+..|+.++|++|++
T Consensus       162 ~~~i----------n~~d~~g~TpLh~A~~~~~~~~v~~Ll~  193 (229)
T d1ixva_         162 KSAV----------NWQDKQGWTPLFHALAEGHGDAAVLLVE  193 (229)
T ss_dssp             CCCS----------CCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccc----------cccccccCCchhhhcccccHHHHHHHHH
Confidence            2 33          2335667777777777777777777774

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.8e-24  Score=185.05  Aligned_cols=151  Identities=21%  Similarity=0.228  Sum_probs=140.2

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      .|++|++||..|+.+.|+.||.. |++++ .|..|+||||+|+..++.++++.++......+. .+..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~-ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMAN-GAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-TCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHc-CCCcc-cccCCCccccccccccccccccccccccccccc-cccccccccccccccc
Confidence            36899999999999999888876 88887 599999999999999999999999999888877 7888999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchH
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHP  165 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  165 (534)
                      +.+++++|+.+|++++.++..|+||||+|+..|+.+++++|++.|++++.          .|..|.||||+|+..|+.++
T Consensus        79 ~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~----------~d~~g~Tpl~~A~~~g~~ei  148 (153)
T d1awcb_          79 HANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT----------QSKFCKTAFDISIDNGNEDL  148 (153)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHH
T ss_pred             cceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcc----------cCCCCCCHHHHHHHcCCHHH
Confidence            99999999999999999999999999999999999999999999999843          47889999999999999999


Q ss_pred             HHHH
Q psy2859         166 VRVA  169 (534)
Q Consensus       166 v~~L  169 (534)
                      +++|
T Consensus       149 v~lL  152 (153)
T d1awcb_         149 AEIL  152 (153)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.91  E-value=1.5e-24  Score=208.37  Aligned_cols=155  Identities=17%  Similarity=0.165  Sum_probs=121.7

Q ss_pred             CchhHHHHHHhCCHHHHHHHH-------HhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC----
Q psy2859           6 EGNEIFDFISKNDIDNVQKLL-------SEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHG----   74 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL-------~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G----   74 (534)
                      +.++||.||..|+.+.|..||       ...|++||.+|..|+||||+|+..|+.++|++||++|+|++. .+..|    
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~-~~~~g~t~l  111 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSAL  111 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccc-ccccccccc
Confidence            346777777777777665553       457999999999999999999999999999999999999998 45444    


Q ss_pred             ----------------------------------------------------------------------------chHH
Q psy2859          75 ----------------------------------------------------------------------------YSAL   78 (534)
Q Consensus        75 ----------------------------------------------------------------------------~TpL   78 (534)
                                                                                                  .|||
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence                                                                                        4555


Q ss_pred             HHHHHcCCHHHHHHHH-hcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHH
Q psy2859          79 HFAALSGKDDVCACLL-SAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTF  157 (534)
Q Consensus        79 h~A~~~g~~~iv~~Ll-~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  157 (534)
                      |+++..++.+++++++ ..+.+.+.+|..|+||||+|+..|..+++++|++.|++++.          .|..|.||||+|
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~----------~d~~G~T~L~~A  261 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA----------VDATDHTARQLA  261 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC----------CCSSSCCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC----------cCCCCCCHHHHH
Confidence            5555555556665544 45677777788888888888888888888888888888743          367788888888


Q ss_pred             HHhcCchHHHHHHh
Q psy2859         158 IMQVNIHPVRVALN  171 (534)
Q Consensus       158 ~~~~~~~~v~~Ll~  171 (534)
                      +..|+.++|++|++
T Consensus       262 ~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         262 QANNHHNIVDIFDR  275 (277)
T ss_dssp             HHTTCHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHH
Confidence            88888888888764

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.91  E-value=1.7e-23  Score=202.60  Aligned_cols=120  Identities=27%  Similarity=0.394  Sum_probs=102.1

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcC
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSG   85 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g   85 (534)
                      ++++|++||..|+.+.|+.||.. |+++|..|..|+||||+|+..|+.++|++|+++|++++. .+..+.|||+.|+..|
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~-Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~-~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLER-GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHH-CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHC-CCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccc-cccccccccccccccc
Confidence            35778999999999999888765 999999999999999999999999999999999999988 7899999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHh
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIA  127 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~  127 (534)
                      +.++++.|+++|+..+..+..|.+|+++|+..+..+++..++
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll  159 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEV  159 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHH
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccc
Confidence            999999999999888777666555555555554444444443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=7.2e-24  Score=201.16  Aligned_cols=154  Identities=19%  Similarity=0.155  Sum_probs=133.3

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---------------------
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGAD---------------------   65 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~---------------------   65 (534)
                      .++|+.|+..|+.+.+..|| +.|++++..|..|.||||+|+..|+.+++++|++.+..                     
T Consensus        46 ~TpL~~A~~~g~~~iv~~Ll-~~ga~i~~~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (255)
T d1oy3d_          46 QTALHLAAILGEASTVEKLY-AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS  124 (255)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH-HTTCCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC----------------
T ss_pred             CCccchHHhhcccccccccc-cccccccccccccchhhhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccch
Confidence            36777777887777665554 56999999999999999999999999999999765432                     


Q ss_pred             --------------------------CCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHhc
Q psy2859          66 --------------------------VNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYA-TNSVGRTASQMAAFVV  118 (534)
Q Consensus        66 --------------------------vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~-~~~~G~TpL~~A~~~~  118 (534)
                                                ++. .+..|.||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~in~-~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~  203 (255)
T d1oy3d_         125 HAPAAVDSQPNPENEEEPRDEDWRLQLEA-ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQ  203 (255)
T ss_dssp             -------------------CCCGGGGTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTT
T ss_pred             HHHHHHHhhcchhHHHHHHhhhcCccccc-ccccCcccccccccccccccccchhccccccccccccccccccccccccc
Confidence                                      122 467799999999999999999999999999875 4678999999999999


Q ss_pred             HHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         119 VAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       119 ~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +.+++++|+++|++++.          .|..|.||||+|+..++.+++++|+++
T Consensus       204 ~~~~v~~Ll~~gadin~----------~d~~g~t~L~~A~~~~~~~i~~~Ll~~  247 (255)
T d1oy3d_         204 AASVLELLLKAGADPTA----------RMYGGRTPLGSALLRPNPILARLLRAH  247 (255)
T ss_dssp             CHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHTSSCHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999853          477899999999999999999999987

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.6e-24  Score=198.38  Aligned_cols=180  Identities=18%  Similarity=0.131  Sum_probs=152.6

Q ss_pred             CchhHHHHHHhCCHHHHH---HHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQ---KLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~---~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      +.++||.|+..|+.+.+.   +++...|+++|.+|..|+||||+|+..|+.+++++|++.|++++. .|..|.||||+|+
T Consensus         2 G~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-~d~~g~t~l~~~~   80 (221)
T d1iknd_           2 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCccccccccccccccccccccccccccc-ccccccccccccc
Confidence            456677788888865444   445567999999999999999999999999999999999999999 8999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCC------CCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHH
Q psy2859          83 LSGKDDVCACLLSAGAKS------YATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHT  156 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~------~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~  156 (534)
                      ..|+.++++.|++.+...      +.....|.||||.|+..+..+++.+|+..|+.++..         .+..|.||||+
T Consensus        81 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~---------~~~~G~T~L~~  151 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---------EPCNGRTALHL  151 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC---------CTTTCCCHHHH
T ss_pred             ccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc---------cccCCCCcccc
Confidence            999999999999987653      334557899999999999999999999999887533         35569999999


Q ss_pred             HHHhcCchHHHHHHhh------------CCcccccccchHHHHHHHHHhhh
Q psy2859         157 FIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSEKQM  195 (534)
Q Consensus       157 A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~~~  195 (534)
                      |+..|+.+++++|+++            +|++++...+..++++.|.+...
T Consensus       152 A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         152 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             HHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             ccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC
Confidence            9999999999999976            78999999999999999966443

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.3e-24  Score=180.54  Aligned_cols=119  Identities=23%  Similarity=0.288  Sum_probs=71.4

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-hHHHHHHHcC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGY-SALHFAALSG   85 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~-TpLh~A~~~g   85 (534)
                      .+.||.||..|+.+.|+.||. +|+++|.+|..|.||||+|+ .|+.+++++|+++|+++|. .+..|. ||||+|+..|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~-~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~-~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLE-AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNC-ADPATLTRPVHDAAREG   80 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHT-TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCC-CCTTTCCCHHHHHHHHT
T ss_pred             hhHHHHHHHCCCHHHHHHHHH-cCCccccccccccccccccc-ccccccccccccccccccc-ccccccccccccccccc
Confidence            445566666666555555443 36666666666666666443 4666666666666666665 444433 4666666666


Q ss_pred             CHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhh
Q psy2859          86 KDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAK  128 (534)
Q Consensus        86 ~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~  128 (534)
                      +.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+.
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            6666666666666666666666666666666666666666543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=193.62  Aligned_cols=154  Identities=19%  Similarity=0.181  Sum_probs=138.5

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHH---hCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCC----------
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLS---EHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGR----------   70 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~---~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~----------   70 (534)
                      +.+.++||.||..|+.+.++.|+.   +.|+++|.+|..|+||||+|+..|+.+++++|+++|++++...          
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            346688899999999988877764   6799999999999999999999999999999999999888741          


Q ss_pred             ------------------------------------------------------------CCCCchHHHHHHHcCCHHHH
Q psy2859          71 ------------------------------------------------------------HEHGYSALHFAALSGKDDVC   90 (534)
Q Consensus        71 ------------------------------------------------------------~~~G~TpLh~A~~~g~~~iv   90 (534)
                                                                                  ...|.+||+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence                                                                        13488999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHH
Q psy2859          91 ACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVR  167 (534)
Q Consensus        91 ~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~  167 (534)
                      +.+++.|.+++.+|..|.||||+|+..|+.+++++|++.|+|++.          .|..|.||||+|+..|+.++|+
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~----------~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----------KNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTC----------CCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999999999999853          4778999999999999988874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.4e-24  Score=178.72  Aligned_cols=98  Identities=18%  Similarity=0.140  Sum_probs=91.1

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCC-CHHHHHHHhc
Q psy2859          40 GMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGR-TASQMAAFVV  118 (534)
Q Consensus        40 g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~-TpL~~A~~~~  118 (534)
                      +.++||+|+..|++++|++||++|+|+|. .+..|.||||+|+ .|+.++|++|+++|++++.++..|. ||||+|+..|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~-~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccc-ccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            56899999999999999999999999999 8999999999775 7999999999999999999998876 6999999999


Q ss_pred             HHHHHHHHhhcCCceeeccCC
Q psy2859         119 VAVINNYIAKSEVDYYIVPRG  139 (534)
Q Consensus       119 ~~~i~~~L~~~~~~~~~~~~~  139 (534)
                      +.+++++|++.|++++..+..
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~  101 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAW  101 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTT
T ss_pred             cccccccccccccccccccCC
Confidence            999999999999999887544

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.90  E-value=6.9e-25  Score=210.70  Aligned_cols=184  Identities=19%  Similarity=0.132  Sum_probs=142.9

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHH--------HHCCCCCCCCCCCCCchHHH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLL--------LDHGADVNSGRHEHGYSALH   79 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~L--------l~~ga~vn~~~~~~G~TpLh   79 (534)
                      +|++.++..++...+.++|.+.++++.. +..|+||||+||..|+.++|++|        ++.|||||. .|.+|+||||
T Consensus         2 ~p~~~~~~~~~~~~~~~~l~~~~~n~~~-~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~-~d~~G~TpLh   79 (277)
T d2fo1e1           2 SPIKLHTEAAGSYAITEPITRESVNIID-PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA-MDCDENTPLM   79 (277)
T ss_dssp             CCCHHHHHHHSSSCCCSCCSTTTTTTCC-CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC-CCTTSCCHHH
T ss_pred             ChHHHHHHhCCCHHHHHHHHhcCCCcCC-CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc-cCCCCCeeec
Confidence            5777777778888888888887777643 24599999999999999988776        567999999 8999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCc---eeeccCC-----------------
Q psy2859          80 FAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVD---YYIVPRG-----------------  139 (534)
Q Consensus        80 ~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~---~~~~~~~-----------------  139 (534)
                      +|+..|+.++|++||++|++++.+|..|.|||++|+..+...+..++...+..   ++.....                 
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQV  159 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHH
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccc
Confidence            99999999999999999999999999999999999999888888877664321   1111000                 


Q ss_pred             -----------------CCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh-------------CCcccccccchHHHHHH
Q psy2859         140 -----------------LETTPKLDPILAEPLHTFIMQVNIHPVRVALNL-------------LPSLISHLPSVRKVVSL  189 (534)
Q Consensus       140 -----------------~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------~p~~~~~~~~~~~~~~~  189 (534)
                                       .......+..|.||||+++..++.+++.+++..             +|++.+...+..+++++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~  239 (277)
T d2fo1e1         160 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY  239 (277)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHH
Confidence                             000122345678888888888888887776643             56777777777788888


Q ss_pred             HHHh
Q psy2859         190 LSEK  193 (534)
Q Consensus       190 l~~~  193 (534)
                      |.+.
T Consensus       240 Ll~~  243 (277)
T d2fo1e1         240 LIQQ  243 (277)
T ss_dssp             HHHT
T ss_pred             HHHC
Confidence            8654

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=5.4e-24  Score=195.67  Aligned_cols=150  Identities=20%  Similarity=0.168  Sum_probs=119.3

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCC----------------------------------H
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGN----------------------------------K   53 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~----------------------------------~   53 (534)
                      ++||.||..|+.+.++ +|+..|+++|.++..+.++++.++..++                                  .
T Consensus        25 t~L~~A~~~g~~e~v~-~Ll~~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (209)
T d1ot8a_          25 TSLHLAARFARADAAK-RLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIE  103 (209)
T ss_dssp             CHHHHHHHTTCHHHHH-HHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHHHHTTCT
T ss_pred             CHHHHHHHcCCHHHHH-HHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence            4444444444444444 4444577777777777777666665432                                  2


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCce
Q psy2859          54 QICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDY  133 (534)
Q Consensus        54 ~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~  133 (534)
                      .+.+.|+..+++++. .+..|.|||++|+..|...+++.|++.+++++..|..|.||||+|+..|+.+++++|++.|+++
T Consensus       104 ~~~~~L~~~~~~~~~-~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~  182 (209)
T d1ot8a_         104 GMVEDLITADADINA-ADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR  182 (209)
T ss_dssp             THHHHHHHTTCCTTC-BCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             hhhhhhhhhcccccc-cCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCC
Confidence            445556666777776 6788999999999999999999999999999999999999999999999999999999999997


Q ss_pred             eeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHH
Q psy2859         134 YIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVA  169 (534)
Q Consensus       134 ~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~L  169 (534)
                      +.          .|..|.||||+|+..|+.++|++|
T Consensus       183 n~----------~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         183 EI----------TDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TC----------CCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CC----------cCCCCCCHHHHHHHcCCHHHHhhc
Confidence            43          477899999999999999999876

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=1.8e-24  Score=180.07  Aligned_cols=105  Identities=30%  Similarity=0.356  Sum_probs=71.4

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD   87 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~   87 (534)
                      ++|+.|+..|+.+.|+.||.. |+++|.+|..|+||||+|+..|+.+++++|+++|+++|. +|..|+||||+|+..|+.
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~-g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~-~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA-PDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTT-TCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTC-CSSSCSCHHHHHHTTTCC
T ss_pred             hHHHHHHHCCCHHHHHHHHHh-hhccccccccccccccccccccccccccccccccceeee-cccccccchhhhhhcCch
Confidence            566666666666666555543 666766666677777777777777777777777777766 666677777777777777


Q ss_pred             HHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          88 DVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        88 ~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      ++|++|+++|++++.+|..|.||||+|
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~t~l~~a  108 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGLTALEAT  108 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTCCCCCTC
T ss_pred             hhhhhhhcccccceeeCCCCCCHHHHH
Confidence            777777777777776666777776665

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.4e-23  Score=178.59  Aligned_cols=124  Identities=16%  Similarity=0.240  Sum_probs=113.8

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccC------CCCCCcHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCchHH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLY------DEHGMTPLQHAAYK---GNKQICQLLLDHGADVNSGRHEHGYSAL   78 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~------d~~g~TpLh~Aa~~---g~~~iv~~Ll~~ga~vn~~~~~~G~TpL   78 (534)
                      ..++.|+..++...+..++.+ |++++..      +..|+||||+|+..   |+.++|++|+++|+++|. +|..|+|||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~-g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~-~d~~g~TpL   85 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYAD-GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDK-QTGKGSTAL   85 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHT-TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTC-CCTTCCCHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHc-CCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhh-hhhhhcccc
Confidence            457789999999999998876 8887654      67899999999975   678999999999999999 899999999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCce
Q psy2859          79 HFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDY  133 (534)
Q Consensus        79 h~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~  133 (534)
                      |+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|++.+...
T Consensus        86 h~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          86 HYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             ccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            9999999999999999999999999999999999999999999999999987654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.89  E-value=5.5e-24  Score=177.17  Aligned_cols=100  Identities=21%  Similarity=0.160  Sum_probs=95.1

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHH
Q psy2859          41 MTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVA  120 (534)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~  120 (534)
                      .|||++|+..|++++|++|+++|+|+|. .+..|+||||+|+..|+.+++++|+++|+++|.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~-~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCC-CSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccc-ccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            4899999999999999999999999999 899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcCCceeeccCCCC
Q psy2859         121 VINNYIAKSEVDYYIVPRGLE  141 (534)
Q Consensus       121 ~i~~~L~~~~~~~~~~~~~~~  141 (534)
                      +++++|++.|++++..+....
T Consensus        82 ~~v~~Ll~~Gad~~~~d~~G~  102 (118)
T d1myoa_          82 SCVKLLLSKGADKTVKGPDGL  102 (118)
T ss_dssp             HHHHHHHTTCCCSSSSSSSTC
T ss_pred             hhhhhhhcccccceeeCCCCC
Confidence            999999999999988765543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-23  Score=177.61  Aligned_cols=92  Identities=21%  Similarity=0.292  Sum_probs=50.4

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHH
Q psy2859          42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAV  121 (534)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~  121 (534)
                      ++||.||..|+.++|++|+++|+|+|. +|.+|+||||+|+..|+.+++++|++.|++++.+|.+|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~-~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc-cccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            345555555555555555555555555 4555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHhhcCCcee
Q psy2859         122 INNYIAKSEVDYY  134 (534)
Q Consensus       122 i~~~L~~~~~~~~  134 (534)
                      ++++|+++|++++
T Consensus        82 ~v~~Ll~~ga~v~   94 (130)
T d1ycsb1          82 VCKFLVESGAAVF   94 (130)
T ss_dssp             HHHHHHHTTCCTT
T ss_pred             HHHHHHHcCCCcc
Confidence            5555555555543

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=6.3e-23  Score=173.79  Aligned_cols=121  Identities=23%  Similarity=0.368  Sum_probs=108.4

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD   87 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~   87 (534)
                      +.|+.||..|+.+.|+.||. +|+++|.+|..|+||||+|+..|+.+++++|+++|+++|. .|.+|+||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~-~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~-~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIY-EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA-ADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTS-TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-cCCCcccccccccccccccccccccccccccccccccccc-ccccCcccccccchhhHH
Confidence            35788889999988876665 5999999999999999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCC-CCCCHHHHHH--HhcHHHHHHHHhhcC
Q psy2859          88 DVCACLLSAGAKSYATNS-VGRTASQMAA--FVVVAVINNYIAKSE  130 (534)
Q Consensus        88 ~iv~~Ll~~ga~~~~~~~-~G~TpL~~A~--~~~~~~i~~~L~~~~  130 (534)
                      ++|++|+++|++++..+. .|.||++++.  ..|+.+++++|+..+
T Consensus        81 ~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          81 QVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             HHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999998765 6899988764  558889999998653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-21  Score=198.93  Aligned_cols=183  Identities=20%  Similarity=0.154  Sum_probs=144.7

Q ss_pred             hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH
Q psy2859           8 NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD   87 (534)
Q Consensus         8 ~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~   87 (534)
                      +|||.||..|+.+.|+.||.. |+++|..|..|+||||+|+..|+.++|++||++|+++|. .+..|.||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~-g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~-~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA-KAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHT-TCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC-CCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCH
Confidence            689999999999999888865 999999999999999999999999999999999999999 899999999999888766


Q ss_pred             H------------------------------------------------------------------HHHHHHhcCCCCC
Q psy2859          88 D------------------------------------------------------------------VCACLLSAGAKSY  101 (534)
Q Consensus        88 ~------------------------------------------------------------------iv~~Ll~~ga~~~  101 (534)
                      +                                                                  +++.|+++|++++
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~  159 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN  159 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            4                                                                  4556677788888


Q ss_pred             CCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCC-----------------------CCCCCCCCCCCchHHHHH
Q psy2859         102 ATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGL-----------------------ETTPKLDPILAEPLHTFI  158 (534)
Q Consensus       102 ~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~-----------------------~~~~~~~~~g~t~L~~A~  158 (534)
                      ..+..|.+|||+|+..+..+++++|+..|++++......                       ......+..|.|||+.|+
T Consensus       160 ~~~~~~~~~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  239 (408)
T d1n11a_         160 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAA  239 (408)
T ss_dssp             CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             cCCCcCchHHHHHHHcCCHHHHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCCCHHHHHH
Confidence            888899999999999999999999999998876543221                       111223445677777777


Q ss_pred             HhcCchHHHHHHhh------------CCcccccccchHHHHHHHHH
Q psy2859         159 MQVNIHPVRVALNL------------LPSLISHLPSVRKVVSLLSE  192 (534)
Q Consensus       159 ~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~~l~~  192 (534)
                      ..++.+++++++..            +|++.+...+...+++.|.+
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~  285 (408)
T d1n11a_         240 QEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK  285 (408)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHH
Confidence            77777777777654            23444445555566666644

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.7e-21  Score=187.53  Aligned_cols=178  Identities=28%  Similarity=0.332  Sum_probs=136.8

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCC-CCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC---------------
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYD-EHGMTPLQHAAYKGNKQICQLLLDHGADVNSG---------------   69 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d-~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~---------------   69 (534)
                      +.+.|+.|+..|+.+.|+.|| ++|+++|.++ ..|+||||+|+..|+.+++++|++.|++++..               
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll-~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~   83 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLL-EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHH-HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT
T ss_pred             CcHHHHHHHHcCCHHHHHHHH-HCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcC
Confidence            345677777777777666655 5599999875 57999999999999999999999988766543               


Q ss_pred             ------------------------------------------------------------CCCCCchHHHHHHHcCCHHH
Q psy2859          70 ------------------------------------------------------------RHEHGYSALHFAALSGKDDV   89 (534)
Q Consensus        70 ------------------------------------------------------------~~~~G~TpLh~A~~~g~~~i   89 (534)
                                                                                  ....|.||||+|+.+|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~  163 (285)
T d1wdya_          84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEV  163 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHH
T ss_pred             CccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHH
Confidence                                                                        01236777777777777777


Q ss_pred             HHHHHhc-CCCCCCCCCCCCCHHHHHHHh----cHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCch
Q psy2859          90 CACLLSA-GAKSYATNSVGRTASQMAAFV----VVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIH  164 (534)
Q Consensus        90 v~~Ll~~-ga~~~~~~~~G~TpL~~A~~~----~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  164 (534)
                      +++|++. |++++..+..|.++++.+...    +...++++|++.|++++          ..+..|.||||.|+..|+.+
T Consensus       164 ~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n----------~~~~~g~t~L~~a~~~~~~~  233 (285)
T d1wdya_         164 LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN----------VRGERGKTPLILAVEKKHLG  233 (285)
T ss_dssp             HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS----------CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC----------ccCCCCCCccchhhhcCcHH
Confidence            7777754 677777777777776665544    45567777777777763          34677999999999999999


Q ss_pred             HHHHHHhh-------------CCcccccccchHHHHHHHHHhh
Q psy2859         165 PVRVALNL-------------LPSLISHLPSVRKVVSLLSEKQ  194 (534)
Q Consensus       165 ~v~~Ll~~-------------~p~~~~~~~~~~~~~~~l~~~~  194 (534)
                      +|++|++.             +|++++...+..+++++|++.+
T Consensus       234 ~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~G  276 (285)
T d1wdya_         234 LVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            99999964             6788899999999999996544

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.87  E-value=4.5e-24  Score=212.27  Aligned_cols=127  Identities=14%  Similarity=0.033  Sum_probs=106.4

Q ss_pred             chhHHHHHHhCCHHHHHH--HHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCC--CCCchHHHHHH
Q psy2859           7 GNEIFDFISKNDIDNVQK--LLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRH--EHGYSALHFAA   82 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~--lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~--~~G~TpLh~A~   82 (534)
                      .++|+.||..|+.+.+..  +|.+.|+++|.+|..|+||||+||.+|+.++|++|+++|++++. .+  .+|+||||+|+
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~-~~~~~~g~t~L~~Aa  169 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM-AMIQAENYHAFRLAA  169 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHH-HHHSHHHHHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccc-cccccCCCChhHHHH
Confidence            466777888888776644  47888999999999999999999999999999999999999987 44  46999999999


Q ss_pred             HcCCHHHHHHHHhcCCCC---CCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCcee
Q psy2859          83 LSGKDDVCACLLSAGAKS---YATNSVGRTASQMAAFVVVAVINNYIAKSEVDYY  134 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~---~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~  134 (534)
                      ..|+.++|++|++.|++.   +..+..|.||++.|+.+|+.+++++|++.|++++
T Consensus       170 ~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         170 ENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHH
T ss_pred             HHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcc
Confidence            999999999999999865   3444567788888999999999999999887654

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.2e-21  Score=198.43  Aligned_cols=154  Identities=21%  Similarity=0.208  Sum_probs=138.6

Q ss_pred             chhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCC
Q psy2859           7 GNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGK   86 (534)
Q Consensus         7 ~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~   86 (534)
                      .++++.|+..++.+.+.. +...+..++..+..|.|||+.|+..++.+++++|+++|++++. .+..+.||||.|+..++
T Consensus       232 ~t~l~~a~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~-~~~~~~t~L~~~~~~~~  309 (408)
T d1n11a_         232 VTPLHLAAQEGHAEMVAL-LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA-TTRMGYTPLHVASHYGN  309 (408)
T ss_dssp             CCHHHHHHHTTCHHHHHH-HHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCSSCCCHHHHHHHSSC
T ss_pred             CCHHHHHHHhCcHhHhhh-hhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCcccc-ccccccccchhhcccCc
Confidence            355666667766666555 5555899999999999999999999999999999999999999 88899999999999999


Q ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859          87 DDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus        87 ~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      .+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.          .|..|.||||+|++.|+.++|
T Consensus       310 ~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~----------~d~~G~t~L~~A~~~~~~~iv  379 (408)
T d1n11a_         310 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE----------VSSDGTTPLAIAKRLGYISVT  379 (408)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC----------CCSSSCCHHHHHHHTTCHHHH
T ss_pred             ceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHHHHcCCHHHH
Confidence            9999999999999999999999999999999999999999999999854          478899999999999999999


Q ss_pred             HHHHhh
Q psy2859         167 RVALNL  172 (534)
Q Consensus       167 ~~Ll~~  172 (534)
                      ++|...
T Consensus       380 ~~L~~~  385 (408)
T d1n11a_         380 DVLKVV  385 (408)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            987443

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=8.8e-22  Score=182.69  Aligned_cols=159  Identities=19%  Similarity=0.126  Sum_probs=136.1

Q ss_pred             CCc-hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CCCCCchHH
Q psy2859           5 MEG-NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSG-----RHEHGYSAL   78 (534)
Q Consensus         5 ~~~-~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~-----~~~~G~TpL   78 (534)
                      ..| +|||.|+..|+. .+.++|.+.|++++.+|..|.||||+|+..|+.++++.|+..+.+....     ....|.|||
T Consensus        37 ~~g~TpLh~A~~~~~~-~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l  115 (221)
T d1iknd_          37 NLQQTPLHLAVITNQP-EIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL  115 (221)
T ss_dssp             TTCCCHHHHHHHTTCH-HHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHH
T ss_pred             CCCCcccccccccccc-ccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccchhh
Confidence            344 455556666555 5666677779999999999999999999999999999999987654331     355689999


Q ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCCC-CCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHH
Q psy2859          79 HFAALSGKDDVCACLLSAGAKSYATN-SVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTF  157 (534)
Q Consensus        79 h~A~~~g~~~iv~~Ll~~ga~~~~~~-~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A  157 (534)
                      |.|+..|+.+++++|+..|+.++..+ ..|.||||+|+..|+.+++++|+++|+|++.          .+..|.||||+|
T Consensus       116 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~----------~~~~G~tpl~~A  185 (221)
T d1iknd_         116 HLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR----------VTYQGYSPYQLT  185 (221)
T ss_dssp             HHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCC----------CCTTCCCGGGGC
T ss_pred             hHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccc----------cCCCCCCHHHHH
Confidence            99999999999999999999988765 5799999999999999999999999999854          477899999999


Q ss_pred             HHhcCchHHHHHHhhCC
Q psy2859         158 IMQVNIHPVRVALNLLP  174 (534)
Q Consensus       158 ~~~~~~~~v~~Ll~~~p  174 (534)
                      +..++.+++++|++...
T Consensus       186 ~~~~~~~~~~~l~~~~~  202 (221)
T d1iknd_         186 WGRPSTRIQQQLGQLTL  202 (221)
T ss_dssp             TTSSCHHHHHHHHTTSC
T ss_pred             HHCCCHHHHHHHHHcCC
Confidence            99999999999998743

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=6.9e-22  Score=172.72  Aligned_cols=139  Identities=22%  Similarity=0.205  Sum_probs=127.2

Q ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHH
Q psy2859          42 TPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAV  121 (534)
Q Consensus        42 TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~  121 (534)
                      +|||+||..|++++|++|+++|+|+|. .|..|.||||+|+ .|+.+++++|+++|++++..+..|.++|+.++..+...
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~-~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCcccccccccc-cccccccccccccccccccccccCcccccccccccccc
Confidence            899999999999999999999999999 8999999999886 79999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh-------------CCcccccccchHHHHH
Q psy2859         122 INNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL-------------LPSLISHLPSVRKVVS  188 (534)
Q Consensus       122 i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------------~p~~~~~~~~~~~~~~  188 (534)
                      ++.+|+..+.+++          ..+..|.+||++|+..++.+++++|+++             +|++++...+..++++
T Consensus        81 ~~~~l~~~~~~~~----------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~  150 (156)
T d1ihba_          81 TLQTLLEFQADVN----------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS  150 (156)
T ss_dssp             HHHHHHHTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccc----------ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHH
Confidence            9999999988863          3477899999999999999999999976             5677777777888888


Q ss_pred             HHHH
Q psy2859         189 LLSE  192 (534)
Q Consensus       189 ~l~~  192 (534)
                      +|.+
T Consensus       151 ~Ll~  154 (156)
T d1ihba_         151 LMQA  154 (156)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8754

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.84  E-value=9.3e-21  Score=183.07  Aligned_cols=165  Identities=20%  Similarity=0.242  Sum_probs=124.3

Q ss_pred             CCCc-hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           4 PMEG-NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         4 ~~~~-~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      +.+| ++|+.|+..|+.+ +.++|.++|.+++..+..+.|||++|+..++.++++.|+++|+..+. .+..|.+|+++|+
T Consensus        70 d~~G~T~L~~A~~~g~~e-iv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~a~  147 (291)
T d1s70b_          70 NVDGLTALHQACIDDNVD-MVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAE  147 (291)
T ss_dssp             CTTCCBHHHHHHHTTCHH-HHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHCC
T ss_pred             CCCCCcHHHHHHhcCCce-eeeeecccccccccccccccccccccccccccchhhcccccCccccc-ccccCcccccccc
Confidence            4445 5555555565655 55566667999999999999999999999999999999999999888 7778888888888


Q ss_pred             HcCCHHHHHHHHhc-CC--------------------------CCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceee
Q psy2859          83 LSGKDDVCACLLSA-GA--------------------------KSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYI  135 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~-ga--------------------------~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~  135 (534)
                      ..++.++++.|+.. |.                          +....+..|.||||+|+..+..+++++|+..|++++.
T Consensus       148 ~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~  227 (291)
T d1s70b_         148 EEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI  227 (291)
T ss_dssp             SHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC
T ss_pred             ccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhcccccceecccc
Confidence            77777777766643 22                          2234556777888888888888888888888777632


Q ss_pred             ccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccc
Q psy2859         136 VPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHL  180 (534)
Q Consensus       136 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~  180 (534)
                                .+..|.||||+|+..|+.++|++|+++            +|++++..
T Consensus       228 ----------~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         228 ----------KDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             ----------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             ----------cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence                      356678888888888888888888865            67777654

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.4e-20  Score=164.58  Aligned_cols=124  Identities=21%  Similarity=0.272  Sum_probs=114.0

Q ss_pred             CCCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHH
Q psy2859           3 IPMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAA   82 (534)
Q Consensus         3 ~~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~   82 (534)
                      .+..|.+++++|..|+.+.+..||. ++.++|..+..|.+||++|+..++.+++++++++|+++|. ++..|.||||+|+
T Consensus        32 ~d~~g~t~L~~A~~~~~~~v~~Ll~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~-~~~~~~t~L~~A~  109 (156)
T d1bd8a_          32 LNRFGKTALQVMMFGSTAIALELLK-QGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV-PDGTGALPIHLAV  109 (156)
T ss_dssp             CCTTSCCHHHHSCTTCHHHHHHHHH-TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHH
T ss_pred             cCCCCCccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccc-ccCCCCeeecccc
Confidence            3566777888888899888776665 5999999999999999999999999999999999999999 8999999999999


Q ss_pred             HcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhc
Q psy2859          83 LSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYIAKS  129 (534)
Q Consensus        83 ~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~  129 (534)
                      ..|+.+++++|+ .|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       110 ~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         110 QEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            999999999887 6899999999999999999999999999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=3.3e-20  Score=172.56  Aligned_cols=154  Identities=20%  Similarity=0.176  Sum_probs=120.9

Q ss_pred             CCCch-hHHHHHHhCCHHHHHHHHHhCCCCCccC---CCCCCcHHHHHH-------------------------------
Q psy2859           4 PMEGN-EIFDFISKNDIDNVQKLLSEHKLRVDLY---DEHGMTPLQHAA-------------------------------   48 (534)
Q Consensus         4 ~~~~~-~l~~aa~~g~~~~v~~lL~~~g~~~n~~---d~~g~TpLh~Aa-------------------------------   48 (534)
                      +.+|. +||.|+..|+.+ +.++|+++|++++..   +..|.||+|+|+                               
T Consensus        31 d~~G~TpL~~A~~~g~~~-iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  109 (229)
T d1ixva_          31 DQDGRIPLHWSVSFQAHE-ITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCL  109 (229)
T ss_dssp             CTTSCCHHHHHHHTTCHH-HHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHH
T ss_pred             CCCCCCHHHHHHHcCCcc-ccchhhhhhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44554 566666666665 455666669888643   444555555544                               


Q ss_pred             ----HcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHhcHHHHH
Q psy2859          49 ----YKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAG-AKSYATNSVGRTASQMAAFVVVAVIN  123 (534)
Q Consensus        49 ----~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~g-a~~~~~~~~G~TpL~~A~~~~~~~i~  123 (534)
                          ..++.+++++|++.|.+.+. .+..|+||||+|+..|+.+++++|++.| .+++.+|..|+||||+|+..++.+++
T Consensus       110 ~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v  188 (229)
T d1ixva_         110 HLAVGKKWFEVSQFLIENGASVRI-KDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA  188 (229)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHH
T ss_pred             ccccccchhhhhhhhhhhcccccc-cCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHH
Confidence                45567777777778887777 7899999999999999999999999987 67899999999999999999999999


Q ss_pred             HHHhh-cCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         124 NYIAK-SEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       124 ~~L~~-~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      ++|+. .|++++.          .|..|.||||+|+.   .+++++|++.
T Consensus       189 ~~Ll~~~gad~~~----------~d~~g~t~l~~A~~---~~~~~~Ll~~  225 (229)
T d1ixva_         189 VLLVEKYGAEYDL----------VDNKGAKAEDVALN---EQVKKFFLNN  225 (229)
T ss_dssp             HHHHHHHCCCSCC----------CCTTSCCTGGGCSC---HHHHHHHHHH
T ss_pred             HHHHHhcCCCCCC----------cCCCCCCHHHHHhh---HHHHHHHHHc
Confidence            99996 6999854          47789999999984   4788888865

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.3e-20  Score=170.47  Aligned_cols=154  Identities=19%  Similarity=0.166  Sum_probs=115.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHH----CCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          39 HGMTPLQHAAYKGNKQICQLLLD----HGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        39 ~g~TpLh~Aa~~g~~~iv~~Ll~----~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      +|+||||+||..|+.++|+.|++    .|+++|. .|..|+||||+|+..|+.++|++|+++|++++..+..|.++++.|
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~-~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCc-cCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            69999999999999999998874    8999999 899999999999999999999999999999999988888888888


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCC----------------------------CCCCCCCCCCCCchHHHHHHhcCchHH
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRG----------------------------LETTPKLDPILAEPLHTFIMQVNIHPV  166 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~----------------------------~~~~~~~~~~g~t~L~~A~~~~~~~~v  166 (534)
                      ...+...+++.+.............                            ..........|.++|+.|+..+...++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~  160 (228)
T d1k1aa_          81 CEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMV  160 (228)
T ss_dssp             HHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHH
T ss_pred             cccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhh
Confidence            8876666666554432221110000                            111123344567777777777777777


Q ss_pred             HHHHhh------------CCcccccccchHHHHHHHHHh
Q psy2859         167 RVALNL------------LPSLISHLPSVRKVVSLLSEK  193 (534)
Q Consensus       167 ~~Ll~~------------~p~~~~~~~~~~~~~~~l~~~  193 (534)
                      +.+++.            +|++.+...+..++++.|.+.
T Consensus       161 ~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  199 (228)
T d1k1aa_         161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS  199 (228)
T ss_dssp             HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             hhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHC
Confidence            777654            566667777777777777543

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=3.9e-20  Score=160.74  Aligned_cols=120  Identities=17%  Similarity=0.089  Sum_probs=108.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCC-----CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Q psy2859          43 PLQHAAYKGNKQICQLLLDHGADVNSG-----RHEHGYSALHFAALS---GKDDVCACLLSAGAKSYATNSVGRTASQMA  114 (534)
Q Consensus        43 pLh~Aa~~g~~~iv~~Ll~~ga~vn~~-----~~~~G~TpLh~A~~~---g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A  114 (534)
                      .|+.|+..+++..+..++..|+|++..     .+..|+||||+|+..   |+.++|++|+++|+++|.+|..|+||||+|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A   88 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYC   88 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccc
Confidence            466888999999999999999987763     267899999999975   678999999999999999999999999999


Q ss_pred             HHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         115 AFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       115 ~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                      +..|+.+++++|+++|++++.          .|..|.||||+|+..|+.+++++|++.
T Consensus        89 ~~~~~~~~v~~Ll~~gad~~~----------~d~~g~tpL~~A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1          89 CLTDNAECLKLLLRGKASIEI----------ANESGETPLDIAKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTC----------CCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccccCccccc----------cCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            999999999999999999854          478899999999999999999999976

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.81  E-value=9.7e-20  Score=158.26  Aligned_cols=138  Identities=26%  Similarity=0.208  Sum_probs=125.3

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHH
Q psy2859          41 MTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVA  120 (534)
Q Consensus        41 ~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~  120 (534)
                      .||||.||+.|+.++|++||++|++++  .+..|+||||+|+..++.++++.++.........+..+.++++.++.....
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            399999999999999999999999987  489999999999999999999999999888888888999999999999999


Q ss_pred             HHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHHhcCchHHHHHHhh------------CCcccccccchHHHHH
Q psy2859         121 VINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIMQVNIHPVRVALNL------------LPSLISHLPSVRKVVS  188 (534)
Q Consensus       121 ~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~------------~p~~~~~~~~~~~~~~  188 (534)
                      ++++++...+++.+          ..+..|.||||+|+..|+.++|++|++.            +|++++...+..++++
T Consensus        81 ~~~~~l~~~~~~~~----------~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~  150 (153)
T d1awcb_          81 NIVEVLLKHGADVN----------AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE  150 (153)
T ss_dssp             HHHHHHHTTTCCTT----------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             eeeecccccCCccc----------cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            99999999998873          3477899999999999999999999987            5777778888877777


Q ss_pred             HH
Q psy2859         189 LL  190 (534)
Q Consensus       189 ~l  190 (534)
                      +|
T Consensus       151 lL  152 (153)
T d1awcb_         151 IL  152 (153)
T ss_dssp             HH
T ss_pred             hC
Confidence            65

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=6.1e-20  Score=178.59  Aligned_cols=142  Identities=20%  Similarity=0.171  Sum_probs=107.9

Q ss_pred             HhCCCCCccC-CCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHHcCCH-------HHHHHHHhcCC
Q psy2859          27 SEHKLRVDLY-DEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAALSGKD-------DVCACLLSAGA   98 (534)
Q Consensus        27 ~~~g~~~n~~-d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~~g~~-------~iv~~Ll~~ga   98 (534)
                      ...+.++|.. |..|+||||+||..|+.++|++||++|||++. .|..|+||||+|+..++.       +++++|.   .
T Consensus        93 ~~~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~  168 (301)
T d1sw6a_          93 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---P  168 (301)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---G
T ss_pred             CccCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHh---h
Confidence            3457888876 99999999999999999999999999999999 899999999999987752       3444443   3


Q ss_pred             CCCCCCCCCCCHHHHHHHhcH------------HHHHHHHhhcCCceeeccCCCC-------------------------
Q psy2859          99 KSYATNSVGRTASQMAAFVVV------------AVINNYIAKSEVDYYIVPRGLE-------------------------  141 (534)
Q Consensus        99 ~~~~~~~~G~TpL~~A~~~~~------------~~i~~~L~~~~~~~~~~~~~~~-------------------------  141 (534)
                      +++..|..|+||||.++..+.            ..++.++...+...........                         
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            466778899999999886522            2344555554443222111100                         


Q ss_pred             --CCCCCCCCCCchHHHHHHhcCchHHHHHHhh
Q psy2859         142 --TTPKLDPILAEPLHTFIMQVNIHPVRVALNL  172 (534)
Q Consensus       142 --~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  172 (534)
                        ..+..|..|.||||+|++.|+.++|++|+++
T Consensus       249 ~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~  281 (301)
T d1sw6a_         249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDY  281 (301)
T ss_dssp             HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHT
T ss_pred             hcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence              0244588899999999999999999999987

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.80  E-value=5.5e-22  Score=197.05  Aligned_cols=149  Identities=14%  Similarity=0.012  Sum_probs=118.9

Q ss_pred             hCCHHHHHHHHHhCCCCC-----------ccCCCCCCcHHHHHHHcCCHHHHHH---HHHCCCCCCCCCCCCCchHHHHH
Q psy2859          16 KNDIDNVQKLLSEHKLRV-----------DLYDEHGMTPLQHAAYKGNKQICQL---LLDHGADVNSGRHEHGYSALHFA   81 (534)
Q Consensus        16 ~g~~~~v~~lL~~~g~~~-----------n~~d~~g~TpLh~Aa~~g~~~iv~~---Ll~~ga~vn~~~~~~G~TpLh~A   81 (534)
                      ..+.+.+.+++...++++           +.++..|.||||+||.+|+.+++++   |++.|+++|. .+..|+||||+|
T Consensus        55 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~-~~~~g~taL~~A  133 (346)
T d2ajaa1          55 TKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLA  133 (346)
T ss_dssp             SSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccc-cCCCCCCHHHHH
Confidence            344566766665444333           3456789999999999999877665   7899999999 899999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCCC--CCCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHHH
Q psy2859          82 ALSGKDDVCACLLSAGAKSYATN--SVGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFIM  159 (534)
Q Consensus        82 ~~~g~~~iv~~Ll~~ga~~~~~~--~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~  159 (534)
                      |.+|+.++|++|++.|++++..+  ..|+||||+|+..|+.+++++|++.|++....       ...+..|.||++.|+.
T Consensus       134 a~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~-------~~~~~~~~t~l~~A~~  206 (346)
T d2ajaa1         134 AENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA-------MIQAENYYAFRWAAVG  206 (346)
T ss_dssp             HHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHH-------HHHHHHHHHHHHHHST
T ss_pred             HHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCccccc-------ccccCCCcchhhHHhh
Confidence            99999999999999999998765  46999999999999999999999998765322       1112346788888999


Q ss_pred             hcCchHHHHHHhh
Q psy2859         160 QVNIHPVRVALNL  172 (534)
Q Consensus       160 ~~~~~~v~~Ll~~  172 (534)
                      .|+.++|++|++.
T Consensus       207 ~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         207 RGHHNVINFLLDC  219 (346)
T ss_dssp             TCCHHHHHHHTTS
T ss_pred             cCHHHHHHHHHhC
Confidence            9999999999976

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.78  E-value=5.3e-19  Score=161.76  Aligned_cols=122  Identities=20%  Similarity=0.237  Sum_probs=114.7

Q ss_pred             CCCchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCchHHHHHHH
Q psy2859           4 PMEGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNKQICQLLLDHGADVNSGRHEHGYSALHFAAL   83 (534)
Q Consensus         4 ~~~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A~~   83 (534)
                      +..+...++.+.......+..+|...+++++.++..|.|||++|+..+..++++.|++.++++|. .|..|.||||+|+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~-~d~~g~TpL~~A~~  165 (209)
T d1ot8a_          87 MHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDA-QDDKDETPLFLAAR  165 (209)
T ss_dssp             CTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHH
T ss_pred             cccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeeccccccccc-cccccccccchhcc
Confidence            34566777888888888888888889999999999999999999999999999999999999999 89999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHhcHHHHHHHH
Q psy2859          84 SGKDDVCACLLSAGAKSYATNSVGRTASQMAAFVVVAVINNYI  126 (534)
Q Consensus        84 ~g~~~iv~~Ll~~ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L  126 (534)
                      .|+.++|++||++|++++.+|..|+||||+|+..|+.+++++|
T Consensus       166 ~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         166 EGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999999999999999999999999999987

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=8.8e-19  Score=168.13  Aligned_cols=130  Identities=28%  Similarity=0.326  Sum_probs=119.1

Q ss_pred             CchhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcC----CHHHHHHHHHCCCCCCCCCCCCCchHHHHH
Q psy2859           6 EGNEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKG----NKQICQLLLDHGADVNSGRHEHGYSALHFA   81 (534)
Q Consensus         6 ~~~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g----~~~iv~~Ll~~ga~vn~~~~~~G~TpLh~A   81 (534)
                      +.++|+.|+..|+.+.+..||...|++++..+..|.++++.+...+    ...++++|+++|++++. .+..|.||||+|
T Consensus       148 g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~-~~~~g~t~L~~a  226 (285)
T d1wdya_         148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV-RGERGKTPLILA  226 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC-CCTTSCCHHHHH
T ss_pred             CchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCc-cCCCCCCccchh
Confidence            4567888999999999999998889999999999999988776543    35799999999999998 899999999999


Q ss_pred             HHcCCHHHHHHHHhc-CCCCCCCCCCCCCHHHHHHHhcHHHHHHHHhhcCCceeec
Q psy2859          82 ALSGKDDVCACLLSA-GAKSYATNSVGRTASQMAAFVVVAVINNYIAKSEVDYYIV  136 (534)
Q Consensus        82 ~~~g~~~iv~~Ll~~-ga~~~~~~~~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~  136 (534)
                      +..|+.++|++||+. |+++|.+|.+|.||||+|+..++.+++++|+++|+|++..
T Consensus       227 ~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~  282 (285)
T d1wdya_         227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  282 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCS
T ss_pred             hhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcc
Confidence            999999999999985 9999999999999999999999999999999999998765

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=3.4e-19  Score=173.24  Aligned_cols=141  Identities=16%  Similarity=0.142  Sum_probs=107.1

Q ss_pred             CCCCc-hhHHHHHHhCCHHHHHHHHHhCCCCCccCCCCCCcHHHHHHHcCCH-------HHHHHHHHCCCCCCCCCCCCC
Q psy2859           3 IPMEG-NEIFDFISKNDIDNVQKLLSEHKLRVDLYDEHGMTPLQHAAYKGNK-------QICQLLLDHGADVNSGRHEHG   74 (534)
Q Consensus         3 ~~~~~-~~l~~aa~~g~~~~v~~lL~~~g~~~n~~d~~g~TpLh~Aa~~g~~-------~iv~~Ll~~ga~vn~~~~~~G   74 (534)
                      +|..| ++||.||..|+.+.|+.|| ++|++++.+|..|+||||+|+..++.       +++++|..   +++. .|..|
T Consensus       103 ~D~~G~T~LH~Aa~~g~~~~v~~Ll-~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~---~~~~-~d~~g  177 (301)
T d1sw6a_         103 VDEHGNTPLHWLTSIANLELVKHLV-KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP---CLIL-EDSMN  177 (301)
T ss_dssp             CSTTCCCHHHHHHHTTCHHHHHHHH-HTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG---GGGE-ECTTC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHH-HCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh---hhhh-ccccc
Confidence            35666 5566677777777665555 66999999999999999999987752       44454433   4455 67899


Q ss_pred             chHHHHHHHcCC----HH--------HHHHHHhcCCC-------------------------------------CCCCCC
Q psy2859          75 YSALHFAALSGK----DD--------VCACLLSAGAK-------------------------------------SYATNS  105 (534)
Q Consensus        75 ~TpLh~A~~~g~----~~--------iv~~Ll~~ga~-------------------------------------~~~~~~  105 (534)
                      +||||+++..+.    ..        ++.+++..+..                                     +|.+|.
T Consensus       178 ~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~  257 (301)
T d1sw6a_         178 RTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDS  257 (301)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCT
T ss_pred             CCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCC
Confidence            999999887554    22        33344443322                                     688899


Q ss_pred             CCCCHHHHHHHhcHHHHHHHHhhcCCceeeccCCCCCCCCCCCCCCchHHHHH
Q psy2859         106 VGRTASQMAAFVVVAVINNYIAKSEVDYYIVPRGLETTPKLDPILAEPLHTFI  158 (534)
Q Consensus       106 ~G~TpL~~A~~~~~~~i~~~L~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~  158 (534)
                      .|+||||+|+..|+.+++++|++.|+++++          .+..|.|||++|+
T Consensus       258 ~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~----------~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         258 NGDTCLNIAARLGNISIVDALLDYGADPFI----------ANKSGLRPVDFGA  300 (301)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHHTTCCTTC----------CCTTSCCGGGGTC
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------CCCCCCCHHHHcC
Confidence            999999999999999999999999999854          4778999999985

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=9e-14  Score=91.60  Aligned_cols=40  Identities=45%  Similarity=1.076  Sum_probs=37.3

Q ss_pred             CcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhc
Q psy2859         426 TTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC  466 (534)
Q Consensus       426 ~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C  466 (534)
                      .+.|..||+. ++++|++|+.++|||++||+.||..||.+|
T Consensus         8 ~~~C~~Cg~~-~~~~Cs~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dana1           8 RPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTC   47 (47)
T ss_dssp             CCCCSSSCCC-CCEECTTTSCSEESSHHHHHHTHHHHTTTC
T ss_pred             CCcCcCCCCh-hhccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            4579999997 789999999999999999999999999987

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=2.5e-13  Score=89.82  Aligned_cols=41  Identities=37%  Similarity=0.981  Sum_probs=37.7

Q ss_pred             CCcccCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhc
Q psy2859         425 DTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC  466 (534)
Q Consensus       425 ~~~~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C  466 (534)
                      ....|..|+++ ++++|++|+.++|||++||+.||..||.+|
T Consensus         7 ~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dj8a1           7 SSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHIC   47 (47)
T ss_dssp             CSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTS
T ss_pred             CCCcCCCCCcc-ccccCCCCCCeeeCCHHHHHHHHHHHhhhC
Confidence            34679999997 788999999999999999999999999987

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.7e-13  Score=86.09  Aligned_cols=37  Identities=43%  Similarity=1.089  Sum_probs=35.3

Q ss_pred             cCCCCCCCCcccCCCCCCCccCChhhHHhhHHHhHHhc
Q psy2859         429 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC  466 (534)
Q Consensus       429 C~~C~~~~~~~~C~~C~~~~yc~~~cq~~~w~~h~~~C  466 (534)
                      |..|++. ++++|++|+.++|||++||+.||..||.+|
T Consensus         2 C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C   38 (38)
T d2jw6a1           2 CVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHIC   38 (38)
T ss_dssp             CSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTT
T ss_pred             ccccCcc-ccccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            8999997 789999999999999999999999999987

>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 10, ZMYND10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.3e-12  Score=82.63  Aligned_cols=44  Identities=43%  Similarity=1.013  Sum_probs=39.3

Q ss_pred             CCCCCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhccc
Q psy2859         322 FADDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC  366 (534)
Q Consensus       322 ~~~~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c  366 (534)
                      ..+..+.|..||+. ++++|++|+.++|||++||+.||+.||.+|
T Consensus         4 ~~p~~~~C~~Cg~~-~~~~Cs~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dana1           4 VAPERPRCAYCSAE-ASKRCSRCQNEWYCCRECQVKHWEKHGKTC   47 (47)
T ss_dssp             CCCCCCCCSSSCCC-CCEECTTTSCSEESSHHHHHHTHHHHTTTC
T ss_pred             cCCCCCcCcCCCCh-hhccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            34456789999997 788999999999999999999999999887

>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=1.8e-11  Score=76.61  Aligned_cols=37  Identities=43%  Similarity=1.089  Sum_probs=34.8

Q ss_pred             CCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhccc
Q psy2859         329 CVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC  366 (534)
Q Consensus       329 C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c  366 (534)
                      |..||+. +++.|++|+.++|||++||+.||+.||..|
T Consensus         2 C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~~W~~Hk~~C   38 (38)
T d2jw6a1           2 CVNCGRE-AMSECTGCHKVNYCSTFCQRKDWKDHQHIC   38 (38)
T ss_dssp             CSSSSSS-CSEECTTTCSSEESSHHHHHHHTTTGGGTT
T ss_pred             ccccCcc-ccccCCCCCCEeeCCHHHHHHHHHHHhhhC
Confidence            8889987 789999999999999999999999999887

>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: MYND zinc finger
domain: Zinc finger MYND domain-containing protein 2, MTG8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=3.2e-11  Score=79.50  Aligned_cols=42  Identities=38%  Similarity=0.995  Sum_probs=38.1

Q ss_pred             CCCCcCCCCCCCCCCCCCCCCCceeeCChhHHHHhhhhhhccc
Q psy2859         324 DDTTPCVTCGEENATKKCAKCKTTRYCDRECQRLHWFIHKKEC  366 (534)
Q Consensus       324 ~~~~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~~~~h~~~c  366 (534)
                      .....|..||+. +++.|++|+.++|||++||+.||+.||.+|
T Consensus         6 ~~~~~C~~C~~~-~~~~C~~C~~~~YCs~~CQ~~dW~~Hk~~C   47 (47)
T d2dj8a1           6 DSSESCWNCGRK-ASETCSGCNTARYCGSFCQHKDWEKHHHIC   47 (47)
T ss_dssp             CCSCCCSSSCSC-CCEECTTTSCCEESSHHHHHHTHHHHTTTS
T ss_pred             cCCCcCCCCCcc-ccccCCCCCCeeeCCHHHHHHHHHHHhhhC
Confidence            346789999987 788999999999999999999999999887

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.17  E-value=0.029  Score=35.06  Aligned_cols=29  Identities=28%  Similarity=0.707  Sum_probs=24.8

Q ss_pred             ccCCCCCCCCcccCCCCCCCccCChhhHHh
Q psy2859         428 PCVTCGEENATKKCAKCKTTRYCDRECQRL  457 (534)
Q Consensus       428 ~C~~C~~~~~~~~C~~C~~~~yc~~~cq~~  457 (534)
                      .|..|.......+|++|... |||-.|-+.
T Consensus         9 lC~vC~~~~~KY~CP~C~~~-yCSL~CyK~   37 (46)
T d1x4sa1           9 FCPAGEVQPARYTCPRCNAP-YCSLRCYRT   37 (46)
T ss_dssp             SSCTTCCEEECEECTTTCCE-ESSHHHHHH
T ss_pred             cChhhhCccccccCCCCCCc-eechHHHhh
Confidence            69999988788999999766 999999654

>d1x4sa1 g.85.1.2 (A:8-53) Zinc finger HIT domain containing protein 2, ZNHIT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: HIT/MYND zinc finger-like
superfamily: HIT/MYND zinc finger-like
family: HIT zinc finger
domain: Zinc finger HIT domain containing protein 2, ZNHIT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.45  E-value=0.35  Score=29.94  Aligned_cols=31  Identities=29%  Similarity=0.700  Sum_probs=25.3

Q ss_pred             CcCCCCCCCCCCCCCCCCCceeeCChhHHHHh
Q psy2859         327 TPCVTCGEENATKKCAKCKTTRYCDRECQRLH  358 (534)
Q Consensus       327 ~~C~~c~~~~~~~~c~~c~~~~yc~~~cq~~~  358 (534)
                      ..|..|.......+|.+| .+.|||-.|-+.|
T Consensus         8 ~lC~vC~~~~~KY~CP~C-~~~yCSL~CyK~H   38 (46)
T d1x4sa1           8 GFCPAGEVQPARYTCPRC-NAPYCSLRCYRTH   38 (46)
T ss_dssp             CSSCTTCCEEECEECTTT-CCEESSHHHHHHH
T ss_pred             ccChhhhCccccccCCCC-CCceechHHHhhh
Confidence            468889887678899999 5669999998764