Psyllid ID: psy2868


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------29
MLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNHLFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPLHISHVTRWVSYLIYPLLTLKIHKTIQKSGEIENTDRDCKM
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccHHHHcccccEccccccccc
mlqnhlfthsyvtkppvhtficYKTTCSHIHMLQnhlfthsyvtkppvhtficYKTTCSHIHMLQnhlfthsyvtkppvhtficYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNhlfthsyvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkppvhtshvtkplhishvTRWVSYLIYPLLTLKIHKTIQksgeientdrdckm
mlqnhlfthsyvtkppvHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNHLFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPLHISHVTRWVSYLIYPLLTLKIHktiqksgeientdrdckm
MLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNHLFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPLHISHVTRWVSYLIYPLLTLKIHKTIQKSGEIENTDRDCKM
****HLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNHLFTHSYVTKPPV****************************************************************************************************************SHVTKPLHISHVTRWVSYLIYPLLTLKIHKTI***************
*************************************************************************************************************************************************************************************************************************************************************************************************
MLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNHLFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPLHISHVTRWVSYLIYPLLTLKIHKTIQKSG***********
****HLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNHLFT**YVTKPPV*****T******************************K*******************K***********************************************************KPLHISHVTRWVSYLIYPLLTLKIHKTIQKS************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNHLFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPLHISHVTRWVSYLIYPLLTLKIHKTIQKSGEIENTDRDCKM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query289 2.2.26 [Sep-21-2011]
Q40375371 Repetitive proline-rich c N/A N/A 0.826 0.644 0.344 1e-28
P13993230 Repetitive proline-rich c yes N/A 0.584 0.734 0.394 8e-25
Q40358236 Repetitive proline-rich c N/A N/A 0.643 0.788 0.384 1e-24
P08012256 Repetitive proline-rich c no N/A 0.602 0.679 0.388 6e-24
Q43564206 Repetitive proline-rich c N/A N/A 0.581 0.815 0.396 8e-21
Q8N1N5446 Cysteine-rich PAK1 inhibi yes N/A 0.723 0.468 0.312 4e-19
Q25060419 LWamide neuropeptides OS= N/A N/A 0.647 0.446 0.274 2e-14
P06600211 Proline-rich 33 kDa exten N/A N/A 0.380 0.521 0.427 0.0003
Q9Y6V0 5065 Protein piccolo OS=Homo s no N/A 0.425 0.024 0.291 0.0008
>sp|Q40375|PRP2_MEDTR Repetitive proline-rich cell wall protein 2 OS=Medicago truncatula GN=PRP2 PE=2 SV=1 Back     alignment and function desciption
 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 117/250 (46%), Gaps = 11/250 (4%)

Query: 2   LQNHLFTHSY---VTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTC 58
           L N+     Y   V KPPV     YK       + +  +     V KPPV     YK   
Sbjct: 21  LANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPP-VYKPPVEKPPVYKPPV 79

Query: 59  SHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNH 118
               + +  +     V KPPV     YK         +  ++   + +  ++   + +  
Sbjct: 80  EKPPVYKPPVEKPP-VYKPPVEKPPVYKPPVE-----KPPVYKPPVEKPPVYKPPVEKPP 133

Query: 119 LFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKP 178
           ++    V KPPV+   V KPPV+   V KPPV+   V KPPV+   V KPPV+   V KP
Sbjct: 134 VYKPP-VEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKP 192

Query: 179 PVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKP 238
           PV+   V KPPV+   V KPPV+   V KPPV+   V KPP++   V KPPV+   V KP
Sbjct: 193 PVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPIYKPPVEKPPVYKPPVEKP 252

Query: 239 PVHTSHVTKP 248
           PV+   V KP
Sbjct: 253 PVYKPPVEKP 262




This is a developmentally regulated putative cell wall protein.
Medicago truncatula (taxid: 3880)
>sp|P13993|PRP2_SOYBN Repetitive proline-rich cell wall protein 2 OS=Glycine max GN=PRP2 PE=2 SV=1 Back     alignment and function description
>sp|Q40358|PRP_MEDSA Repetitive proline-rich cell wall protein OS=Medicago sativa GN=PRP PE=2 SV=1 Back     alignment and function description
>sp|P08012|PRP1_SOYBN Repetitive proline-rich cell wall protein 1 OS=Glycine max GN=PRP1 PE=3 SV=1 Back     alignment and function description
>sp|Q43564|PRP1_MEDTR Repetitive proline-rich cell wall protein 1 OS=Medicago truncatula GN=PRP1 PE=2 SV=1 Back     alignment and function description
>sp|Q8N1N5|CRPAK_HUMAN Cysteine-rich PAK1 inhibitor OS=Homo sapiens GN=CRIPAK PE=1 SV=1 Back     alignment and function description
>sp|Q25060|LWA_HYDEC LWamide neuropeptides OS=Hydractinia echinata PE=2 SV=1 Back     alignment and function description
>sp|P06600|PRP33_DAUCA Proline-rich 33 kDa extensin-related protein (Fragment) OS=Daucus carota PE=2 SV=1 Back     alignment and function description
>sp|Q9Y6V0|PCLO_HUMAN Protein piccolo OS=Homo sapiens GN=PCLO PE=1 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
3914458371 RecName: Full=Repetitive proline-rich ce 0.826 0.644 0.344 8e-27
82581111264 proline-rich protein precursor [Phaseolu 0.806 0.882 0.344 2e-26
8096255343 TrPRP2 [Trifolium repens] 0.813 0.685 0.340 4e-24
437310 549 nodulin [Medicago truncatula] 0.764 0.402 0.384 4e-24
301612464300 PREDICTED: hypothetical protein LOC10048 0.858 0.826 0.303 5e-24
1279233227 proline rich protein [Cicer arietinum] 0.653 0.832 0.359 1e-23
351724433230 repetitive proline-rich cell wall protei 0.584 0.734 0.394 5e-23
3914441236 RecName: Full=Repetitive proline-rich ce 0.643 0.788 0.384 7e-23
356530587256 PREDICTED: repetitive proline-rich cell 0.602 0.679 0.388 3e-22
3914459206 RecName: Full=Repetitive proline-rich ce 0.581 0.815 0.396 5e-19
>gi|3914458|sp|Q40375.1|PRP2_MEDTR RecName: Full=Repetitive proline-rich cell wall protein 2; Flags: Precursor gi|410107|gb|AAA62447.1| cell wall proline-rich protein [Medicago truncatula] Back     alignment and taxonomy information
 Score =  127 bits (318), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 86/250 (34%), Positives = 117/250 (46%), Gaps = 11/250 (4%)

Query: 2   LQNHLFTHSY---VTKPPVHTFICYKTTCSHIHMLQNHLFTHSYVTKPPVHTFICYKTTC 58
           L N+     Y   V KPPV     YK       + +  +     V KPPV     YK   
Sbjct: 21  LANYDKPPVYQPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPP-VYKPPVEKPPVYKPPV 79

Query: 59  SHIHMLQNHLFTHSYVTKPPVHTFICYKTTCSHIHMLQNHLFTLHMLQNHLFTLHMLQNH 118
               + +  +     V KPPV     YK         +  ++   + +  ++   + +  
Sbjct: 80  EKPPVYKPPVEKPP-VYKPPVEKPPVYKPPVE-----KPPVYKPPVEKPPVYKPPVEKPP 133

Query: 119 LFTHSYVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKP 178
           ++    V KPPV+   V KPPV+   V KPPV+   V KPPV+   V KPPV+   V KP
Sbjct: 134 VYKPP-VEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKP 192

Query: 179 PVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKP 238
           PV+   V KPPV+   V KPPV+   V KPPV+   V KPP++   V KPPV+   V KP
Sbjct: 193 PVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPVYKPPVEKPPIYKPPVEKPPVYKPPVEKP 252

Query: 239 PVHTSHVTKP 248
           PV+   V KP
Sbjct: 253 PVYKPPVEKP 262




Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82581111|emb|CAJ43592.1| proline-rich protein precursor [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|8096255|dbj|BAA96106.1| TrPRP2 [Trifolium repens] Back     alignment and taxonomy information
>gi|437310|gb|AAA62850.1| nodulin [Medicago truncatula] Back     alignment and taxonomy information
>gi|301612464|ref|XP_002935738.1| PREDICTED: hypothetical protein LOC100487837 [Xenopus (Silurana) tropicalis] Back     alignment and taxonomy information
>gi|1279233|emb|CAA66038.1| proline rich protein [Cicer arietinum] Back     alignment and taxonomy information
>gi|351724433|ref|NP_001238593.1| repetitive proline-rich cell wall protein 2 precursor [Glycine max] gi|131001|sp|P13993.1|PRP2_SOYBN RecName: Full=Repetitive proline-rich cell wall protein 2; Flags: Precursor gi|4261542|gb|AAD13836.1|S44202_1 repetitive proline-rich protein [Glycine max] gi|18738|emb|CAA34593.1| unnamed protein product [Glycine max] gi|170066|gb|AAA34011.1| cell wall protein (SbPRP2) precursor [Glycine max] gi|255633186|gb|ACU16949.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|3914441|sp|Q40358.1|PRP_MEDSA RecName: Full=Repetitive proline-rich cell wall protein; AltName: Full=MSPRP; Flags: Precursor gi|166408|gb|AAB48006.1| MsPRP [Medicago sativa] Back     alignment and taxonomy information
>gi|356530587|ref|XP_003533862.1| PREDICTED: repetitive proline-rich cell wall protein 1-like isoform 1 [Glycine max] gi|356530589|ref|XP_003533863.1| PREDICTED: repetitive proline-rich cell wall protein 1-like isoform 2 [Glycine max] gi|356530591|ref|XP_003533864.1| PREDICTED: repetitive proline-rich cell wall protein 1-like isoform 3 [Glycine max] gi|356530593|ref|XP_003533865.1| PREDICTED: repetitive proline-rich cell wall protein 1-like isoform 4 [Glycine max] gi|356530595|ref|XP_003533866.1| PREDICTED: repetitive proline-rich cell wall protein 1-like isoform 5 [Glycine max] gi|356530597|ref|XP_003533867.1| PREDICTED: repetitive proline-rich cell wall protein 1-like isoform 6 [Glycine max] gi|130997|sp|P08012.1|PRP1_SOYBN RecName: Full=Repetitive proline-rich cell wall protein 1; Flags: Precursor gi|170049|gb|AAA66287.1| proline-rich protein [Glycine max] Back     alignment and taxonomy information
>gi|3914459|sp|Q43564.1|PRP1_MEDTR RecName: Full=Repetitive proline-rich cell wall protein 1; Flags: Precursor gi|413728|gb|AAA62446.1| cell wall proline-rich protein [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query289
TAIR|locus:4010713767 1480 AT3G22142 "AT3G22142" [Arabido 0.411 0.080 0.451 1.8e-22
UNIPROTKB|Q8N1N5446 CRIPAK "Cysteine-rich PAK1 inh 0.802 0.520 0.309 1.6e-21
TAIR|locus:2081730 313 PRP3 "AT3G62680" [Arabidopsis 0.397 0.367 0.421 2.5e-17
UNIPROTKB|F1SFI5553 HRG "Uncharacterized protein" 0.401 0.209 0.353 2e-12
TAIR|locus:2010990 335 PRP1 "AT1G54970" [Arabidopsis 0.418 0.361 0.356 1e-11
UNIPROTKB|Q6H236 2387 PEG3 "Paternally-expressed gen 0.487 0.059 0.363 5.9e-11
TAIR|locus:2038658 761 EPR1 "AT2G27380" [Arabidopsis 0.442 0.168 0.349 8.1e-11
TAIR|locus:2090419334 CWLP "cell wall-plasma membran 0.394 0.341 0.411 9.7e-11
UNIPROTKB|F1NL38559 F1NL38 "Uncharacterized protei 0.442 0.228 0.328 1.4e-10
UNIPROTKB|F1MBU3 2352 F1MBU3 "Uncharacterized protei 0.404 0.049 0.390 2.3e-10
TAIR|locus:4010713767 AT3G22142 "AT3G22142" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 275 (101.9 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 56/124 (45%), Positives = 69/124 (55%)

Query:   125 VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSH 184
             V  PP+ T  + KPPV T  +TKPPV T     PPV T  + KPPV TS +  PPV    
Sbjct:  1186 VASPPIATPPIIKPPVATPPITKPPVAT-----PPVATPPIAKPPVATSPIETPPVAKPP 1240

Query:   185 VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSH 244
             VT PPV T  + KPP+ T  +  PP+  S +  PP+ T  + KPPV T     PPV TS 
Sbjct:  1241 VTTPPVATPPIVKPPIVTPPIATPPIAKSPIAPPPIGTPPIAKPPVATPPTATPPVATSP 1300

Query:   245 VTKP 248
             + KP
Sbjct:  1301 IAKP 1304


GO:0005575 "cellular_component" evidence=ND
GO:0006869 "lipid transport" evidence=IEA
UNIPROTKB|Q8N1N5 CRIPAK "Cysteine-rich PAK1 inhibitor" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
TAIR|locus:2081730 PRP3 "AT3G62680" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1SFI5 HRG "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
TAIR|locus:2010990 PRP1 "AT1G54970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q6H236 PEG3 "Paternally-expressed gene 3 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
TAIR|locus:2038658 EPR1 "AT2G27380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090419 CWLP "cell wall-plasma membrane linker protein" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NL38 F1NL38 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1MBU3 F1MBU3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 4e-05
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 6e-04
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 8/130 (6%)

Query: 125  VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKP-----PVHTSHVTKPP 179
            V + PV  +      V     T P V  + VT+ P   +            H   V +P 
Sbjct: 894  VVEEPVVVAEPQPEEVVVVETTHPEVIAAPVTEQPQVITESDVAVAQEVAEHAEPVVEPQ 953

Query: 180  VHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPP 239
              T+ +      T+ V         V +P           V T    +P V  + V +  
Sbjct: 954  DETADIE-EAAETAEV--VVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010

Query: 240  VHTSHVTKPL 249
            V  +H T P+
Sbjct: 1011 VEHNHATAPM 1020


Length = 1068

>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query289
3v1v_A 433 2-MIB synthase, 2-methylisoborneol synthase; class 2e-04
3v1v_A 433 2-MIB synthase, 2-methylisoborneol synthase; class 5e-04
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure
 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 17/115 (14%), Positives = 26/115 (22%), Gaps = 3/115 (2%)

Query: 135 VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSH 194
           +     H  H +      SH+  P    + VT           PPV       PP     
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMVIPS---ASVTSAASDFLAALHPPVTVPDPAPPPPPAPA 57

Query: 195 VTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPPVHTSHVTKPL 249
              PP   +  +         T P   +               P        + +
Sbjct: 58  AGNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV 112


>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433 Back     alignment and structure

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00