Psyllid ID: psy2882
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1428 | 2.2.26 [Sep-21-2011] | |||||||
| P04995 | 475 | Exodeoxyribonuclease I OS | N/A | N/A | 0.294 | 0.886 | 0.384 | 2e-87 | |
| P45188 | 473 | Exodeoxyribonuclease I OS | yes | N/A | 0.294 | 0.887 | 0.393 | 3e-87 | |
| P57620 | 413 | Exodeoxyribonuclease I OS | yes | N/A | 0.276 | 0.956 | 0.433 | 1e-78 | |
| Q8K923 | 482 | Exodeoxyribonuclease I OS | yes | N/A | 0.308 | 0.912 | 0.388 | 3e-74 | |
| Q89A43 | 481 | Exodeoxyribonuclease I OS | yes | N/A | 0.285 | 0.848 | 0.381 | 2e-67 | |
| P00582 | 928 | DNA polymerase I OS=Esche | N/A | N/A | 0.182 | 0.280 | 0.435 | 6e-56 | |
| P43741 | 930 | DNA polymerase I OS=Haemo | no | N/A | 0.184 | 0.282 | 0.425 | 1e-55 | |
| Q9F173 | 928 | DNA polymerase I OS=Salmo | no | N/A | 0.184 | 0.283 | 0.433 | 5e-55 | |
| Q8Y1L5 | 190 | UPF0301 protein RSc0675 O | no | N/A | 0.122 | 0.921 | 0.478 | 8e-49 | |
| B2U7A8 | 190 | UPF0301 protein Rpic_0619 | no | N/A | 0.124 | 0.936 | 0.460 | 3e-47 |
| >sp|P04995|EX1_ECOLI Exodeoxyribonuclease I OS=Escherichia coli (strain K12) GN=sbcB PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats.
Identities = 167/434 (38%), Positives = 250/434 (57%), Gaps = 13/434 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L K ++ +P+ ++H+N+ P
Sbjct: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP- 307
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYK----INNSDLEL 664
V++ L R + N+K + N + +K+ + SD
Sbjct: 308 VLAQANTLRPEDADRLGINRQHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSD--- 361
Query: 665 NIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
N+D +LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y
Sbjct: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421
Query: 725 KELKRWKKYRISRF 738
E +RW ++R F
Sbjct: 422 AEQQRWLEHRRQVF 435
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Also functions as a DNA deoxyribophosphodiesterase that releases deoxyribose-phosphate moieties following the cleavage DNA at an apurinic/apyrimidinic (AP) site by either an AP endonuclease AP lyase. Escherichia coli (strain K12) (taxid: 83333) EC: 3EC: .EC: 1EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|P45188|EX1_HAEIN Exodeoxyribonuclease I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=sbcB PE=3 SV=1 | Back alignment and function description |
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| >sp|P57620|EX1_BUCAI Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=sbcB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q8K923|EX1_BUCAP Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=sbcB PE=3 SV=1 | Back alignment and function description |
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| >sp|Q89A43|EX1_BUCBP Exodeoxyribonuclease I OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=sbcB PE=3 SV=1 | Back alignment and function description |
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| >sp|P00582|DPO1_ECOLI DNA polymerase I OS=Escherichia coli (strain K12) GN=polA PE=1 SV=1 | Back alignment and function description |
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| >sp|P43741|DPO1_HAEIN DNA polymerase I OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=polA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9F173|DPO1_SALTY DNA polymerase I OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=polA PE=3 SV=2 | Back alignment and function description |
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| >sp|Q8Y1L5|Y675_RALSO UPF0301 protein RSc0675 OS=Ralstonia solanacearum (strain GMI1000) GN=RSc0675 PE=3 SV=1 | Back alignment and function description |
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| >sp|B2U7A8|Y619_RALPJ UPF0301 protein Rpic_0619 OS=Ralstonia pickettii (strain 12J) GN=Rpic_0619 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1428 | ||||||
| 340786331 | 477 | exodeoxyribonuclease I [Collimonas fungi | 0.324 | 0.972 | 0.484 | 1e-142 | |
| 134093838 | 477 | exonuclease I [Herminiimonas arsenicoxyd | 0.324 | 0.970 | 0.489 | 1e-141 | |
| 91788799 | 480 | exonuclease I [Polaromonas sp. JS666] gi | 0.324 | 0.964 | 0.470 | 1e-140 | |
| 152980617 | 476 | exonuclease I [Janthinobacterium sp. Mar | 0.324 | 0.972 | 0.485 | 1e-140 | |
| 409407386 | 478 | exodeoxyribonuclease I [Herbaspirillum s | 0.326 | 0.974 | 0.468 | 1e-140 | |
| 399017419 | 481 | exonuclease I [Herbaspirillum sp. CF444] | 0.326 | 0.968 | 0.484 | 1e-139 | |
| 239815634 | 479 | exonuclease I [Variovorax paradoxus S110 | 0.325 | 0.970 | 0.481 | 1e-139 | |
| 319793918 | 479 | exodeoxyribonuclease i [Variovorax parad | 0.325 | 0.970 | 0.472 | 1e-138 | |
| 398832180 | 478 | exonuclease I [Herbaspirillum sp. YR522] | 0.326 | 0.974 | 0.462 | 1e-138 | |
| 89900857 | 485 | exonuclease I [Rhodoferax ferrireducens | 0.326 | 0.960 | 0.482 | 1e-138 |
| >gi|340786331|ref|YP_004751796.1| exodeoxyribonuclease I [Collimonas fungivorans Ter331] gi|340551598|gb|AEK60973.1| Exodeoxyribonuclease I [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1322), Expect = e-142, Method: Compositional matrix adjust.
Identities = 228/471 (48%), Positives = 322/471 (68%), Gaps = 7/471 (1%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
TFLW+DYETFG+ RRDRP QFAAIRTD LN I PIMLYC+PA DFLPDP++CLIT I
Sbjct: 5 TFLWHDYETFGVQPRRDRPAQFAAIRTDAELNEIGEPIMLYCQPANDFLPDPQSCLITGI 64
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ CL GIPEY+FA+ IEK F + GTI VGYNTI FDDE+TRF+FWRNLI+PY REW+
Sbjct: 65 TPQQCLERGIPEYQFAAQIEKAFSEAGTIGVGYNTIRFDDEVTRFLFWRNLIDPYAREWQ 124
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVRA 491
N C RWD+++V++ Y L P GI WP + G+PSF+LE L+ N LSH+ AHDALSDVRA
Sbjct: 125 NQCGRWDILDVVRTAYALRPEGIQWPVNDEGRPSFRLELLTKANGLSHEAAHDALSDVRA 184
Query: 492 TLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWPI 551
T+ LARLIR + P+LF+F L+L KK AEIG P RPF +I+ MF ++ +++MWP+
Sbjct: 185 TIALARLIRQHQPKLFDFCLALHKKDRAGAEIGLPTPRPFLHISGMFPAEQGCLAVMWPL 244
Query: 552 CIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKEDI---PISMIHLNRSPI 608
+HP NKN ++ W+L DP + D + +R L K E + P+ +HLN+SP+
Sbjct: 245 GVHPTNKNEILAWDLAFDPSELFSLDADTVRTRLFSKSADLPEGVTRLPLKSVHLNKSPM 304
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
VI+ L+ LS+++ R+ D+ A ++ + A+ + + +W+++F + SD +DE
Sbjct: 305 VINKLQTLSADMTTRWGIDIPLALRHAEIAAQAPDLSGLWRQVFQRPEEAASD----VDE 360
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LY F+ D KL LR+M P+KL+ F++++LEEL F YRARNF +TL+ +E +
Sbjct: 361 DLYGGFVGNNDRRKLNDLRAMPPQKLAAARVSFDDQRLEELAFRYRARNFPDTLTPEEQE 420
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTKILNALLMYGKI 779
RW ++R +R ++ + ++M + EI+ L + A+E +IL AL Y ++
Sbjct: 421 RWDEHRAARLFDGEGKARTVDMLFEEIDQLSETADERGEEILGALYDYAEM 471
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Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134093838|ref|YP_001098913.1| exonuclease I [Herminiimonas arsenicoxydans] gi|133737741|emb|CAL60786.1| Exodeoxyribonuclease I (Exonuclease I) (DNA deoxyribophosphodiesterase) (dRPase) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
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| >gi|91788799|ref|YP_549751.1| exonuclease I [Polaromonas sp. JS666] gi|91698024|gb|ABE44853.1| Exodeoxyribonuclease I subunit C [Polaromonas sp. JS666] | Back alignment and taxonomy information |
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| >gi|152980617|ref|YP_001352252.1| exonuclease I [Janthinobacterium sp. Marseille] gi|151280694|gb|ABR89104.1| exodeoxyribonuclease I [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
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| >gi|409407386|ref|ZP_11255837.1| exodeoxyribonuclease I [Herbaspirillum sp. GW103] gi|386433137|gb|EIJ45963.1| exodeoxyribonuclease I [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
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| >gi|399017419|ref|ZP_10719611.1| exonuclease I [Herbaspirillum sp. CF444] gi|398103293|gb|EJL93464.1| exonuclease I [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
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| >gi|239815634|ref|YP_002944544.1| exonuclease I [Variovorax paradoxus S110] gi|239802211|gb|ACS19278.1| Exodeoxyribonuclease I [Variovorax paradoxus S110] | Back alignment and taxonomy information |
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| >gi|319793918|ref|YP_004155558.1| exodeoxyribonuclease i [Variovorax paradoxus EPS] gi|315596381|gb|ADU37447.1| Exodeoxyribonuclease I [Variovorax paradoxus EPS] | Back alignment and taxonomy information |
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| >gi|398832180|ref|ZP_10590344.1| exonuclease I [Herbaspirillum sp. YR522] gi|398223717|gb|EJN10052.1| exonuclease I [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
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| >gi|89900857|ref|YP_523328.1| exonuclease I [Rhodoferax ferrireducens T118] gi|89345594|gb|ABD69797.1| Exodeoxyribonuclease I subunit C [Rhodoferax ferrireducens T118] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1428 | ||||||
| UNIPROTKB|Q483M2 | 487 | sbcB "Exodeoxyribonuclease I" | 0.315 | 0.924 | 0.373 | 2.3e-82 | |
| TIGR_CMR|CPS_2014 | 487 | CPS_2014 "exodeoxyribonuclease | 0.315 | 0.924 | 0.373 | 2.3e-82 | |
| TIGR_CMR|SO_2790 | 470 | SO_2790 "exodeoxyribonuclease | 0.314 | 0.955 | 0.376 | 2.3e-82 | |
| 5' specific; deoxyribophosphodiesterase" [Escherichia coli K-12 (taxid:83333)]" target="_blank" href="http://amigo.geneontology.org/cgi-bin/amigo/gp-assoc.cgi?gp=UniProtKB:P04995&session_id=448amigo1376602859">UNIPROTKB|P04995 | 475 | sbcB "exonuclease I, 3' --> 5' | 0.296 | 0.890 | 0.385 | 2.5e-79 | |
| UNIPROTKB|Q9KSM2 | 474 | VC_1234 "Exodeoxyribonuclease | 0.324 | 0.976 | 0.335 | 2.9e-73 | |
| TIGR_CMR|VC_1234 | 474 | VC_1234 "exodeoxyribonuclease | 0.324 | 0.976 | 0.335 | 2.9e-73 | |
| TIGR_CMR|CBU_1795 | 902 | CBU_1795 "DNA polymerase I" [C | 0.183 | 0.290 | 0.434 | 1e-51 | |
| UNIPROTKB|Q9KVN3 | 934 | VC_0108 "DNA polymerase I" [Vi | 0.185 | 0.283 | 0.409 | 8.4e-45 | |
| TIGR_CMR|VC_0108 | 934 | VC_0108 "DNA polymerase I" [Vi | 0.185 | 0.283 | 0.409 | 8.4e-45 | |
| UNIPROTKB|P00582 | 928 | polA [Escherichia coli K-12 (t | 0.139 | 0.214 | 0.5 | 1.7e-43 |
| UNIPROTKB|Q483M2 sbcB "Exodeoxyribonuclease I" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 833 (298.3 bits), Expect = 2.3e-82, P = 2.3e-82
Identities = 173/463 (37%), Positives = 270/463 (58%)
Query: 312 TFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKI 371
+ LW+DYET+G+N + D+P QFA IRTD+ LN I P M YC P D+LP P ACL+T I
Sbjct: 14 SILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEACLVTGI 73
Query: 372 TPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWK 431
TPQ G+ E +FA+ I +F +P T GYN+I FDDE+TR++ +RN +PY REW+
Sbjct: 74 TPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDPYAREWQ 133
Query: 432 NNCSRWDLINVIKAFYVLSPYGITWP-YKNNGKP--SFKLEHLSFVNNLSHKKAHDALSD 488
N SRWD+I++++A Y L P GI WP K +G+ SF+LE L+ N++SH+ AHDA+SD
Sbjct: 134 NGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAAHDAMSD 193
Query: 489 VRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLM 548
V AT+ +A+LI+ P+L++FI +L+ K V I P + + SS H S
Sbjct: 194 VYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAHGCTSWF 253
Query: 549 WPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNR 605
P+ HP+NKN +I +L D L +I+ L + + D IP+ +IH+N+
Sbjct: 254 APVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVKLIHVNK 313
Query: 606 SPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELN 665
P++ +L N R + N+ +F +N D++
Sbjct: 314 CPVIAPAKTLLPENAE-RLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDNDDVDA- 371
Query: 666 IDEELYN-NFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSY 724
++ LY +F S D ++ ILR +SP++L+N F F++++L L+F YRARN+ TLS
Sbjct: 372 -EQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPYTLST 430
Query: 725 KELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDT 767
+E ++W++Y ++ + +++ F ++IE+L A+EH+T
Sbjct: 431 EEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENL---AHEHET 470
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| TIGR_CMR|CPS_2014 CPS_2014 "exodeoxyribonuclease I" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|SO_2790 SO_2790 "exodeoxyribonuclease I" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P04995 sbcB "exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KSM2 VC_1234 "Exodeoxyribonuclease I" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_1234 VC_1234 "exodeoxyribonuclease I" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|CBU_1795 CBU_1795 "DNA polymerase I" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KVN3 VC_0108 "DNA polymerase I" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_0108 VC_0108 "DNA polymerase I" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P00582 polA [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.1.11 | 0.691 |
| 3rd Layer | 2.7.7 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.7.7.7 | LOW CONFIDENCE prediction! |
| 3rd Layer | 3.1.11.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1428 | |||
| PRK11779 | 476 | PRK11779, sbcB, exonuclease I; Provisional | 0.0 | |
| COG2925 | 475 | COG2925, SbcB, Exonuclease I [DNA replication, rec | 1e-152 | |
| PRK05755 | 880 | PRK05755, PRK05755, DNA polymerase I; Provisional | 1e-101 | |
| cd06138 | 183 | cd06138, ExoI_N, N-terminal DEDDh 3'-5' exonucleas | 9e-89 | |
| smart00475 | 259 | smart00475, 53EXOc, 5'-3' exonuclease | 5e-82 | |
| TIGR00593 | 887 | TIGR00593, pola, DNA polymerase I | 9e-71 | |
| PRK00228 | 191 | PRK00228, PRK00228, hypothetical protein; Validate | 2e-69 | |
| COG0258 | 310 | COG0258, Exo, 5'-3' exonuclease (including N-termi | 1e-66 | |
| pfam02622 | 158 | pfam02622, DUF179, Uncharacterized ACR, COG1678 | 8e-63 | |
| COG1678 | 194 | COG1678, COG1678, Putative transcriptional regulat | 5e-62 | |
| cd09859 | 174 | cd09859, PIN_53EXO, PIN domain of the 5'-3' exonuc | 3e-60 | |
| PRK14976 | 281 | PRK14976, PRK14976, 5'-3' exonuclease; Provisional | 5e-58 | |
| pfam08411 | 268 | pfam08411, Exonuc_X-T_C, Exonuclease C-terminal | 1e-54 | |
| PRK00137 | 147 | PRK00137, rplI, 50S ribosomal protein L9; Reviewed | 5e-53 | |
| pfam02739 | 169 | pfam02739, 5_3_exonuc_N, 5'-3' exonuclease, N-term | 4e-52 | |
| COG0359 | 148 | COG0359, RplI, Ribosomal protein L9 [Translation, | 7e-45 | |
| PRK09482 | 256 | PRK09482, PRK09482, flap endonuclease-like protein | 4e-35 | |
| TIGR00158 | 148 | TIGR00158, L9, ribosomal protein L9 | 1e-33 | |
| PRK00453 | 108 | PRK00453, rpsF, 30S ribosomal protein S6; Reviewed | 5e-29 | |
| cd05560 | 109 | cd05560, Xcc1710_like, Xcc1710_like family, specif | 9e-26 | |
| COG0360 | 112 | COG0360, RpsF, Ribosomal protein S6 [Translation, | 1e-25 | |
| PRK00391 | 79 | PRK00391, rpsR, 30S ribosomal protein S18; Reviewe | 5e-25 | |
| cd09898 | 73 | cd09898, H3TH_53EXO, H3TH domain of the 5'-3' exon | 5e-24 | |
| CHL00160 | 153 | CHL00160, rpl9, ribosomal protein L9; Provisional | 1e-23 | |
| pfam01367 | 100 | pfam01367, 5_3_exonuc, 5'-3' exonuclease, C-termin | 2e-23 | |
| COG3737 | 127 | COG3737, COG3737, Uncharacterized conserved protei | 9e-23 | |
| pfam01250 | 92 | pfam01250, Ribosomal_S6, Ribosomal protein S6 | 5e-22 | |
| COG0238 | 75 | COG0238, RpsR, Ribosomal protein S18 [Translation, | 2e-21 | |
| pfam03948 | 86 | pfam03948, Ribosomal_L9_C, Ribosomal protein L9, C | 2e-21 | |
| pfam01281 | 48 | pfam01281, Ribosomal_L9_N, Ribosomal protein L9, N | 7e-21 | |
| cd00248 | 109 | cd00248, Mth938-like, Mth938-like domain | 1e-19 | |
| pfam04430 | 109 | pfam04430, DUF498, Protein of unknown function (DU | 3e-18 | |
| TIGR00166 | 93 | TIGR00166, S6, ribosomal protein S6 | 7e-18 | |
| PRK14538 | 838 | PRK14538, PRK14538, putative bifunctional signalin | 7e-18 | |
| TIGR00165 | 70 | TIGR00165, S18, ribosomal protein S18 | 6e-17 | |
| cd00008 | 160 | cd00008, PIN_53EXO-like, PIN domains of the 5'-3' | 4e-16 | |
| pfam00929 | 161 | pfam00929, RNase_T, Exonuclease | 2e-13 | |
| pfam01084 | 54 | pfam01084, Ribosomal_S18, Ribosomal protein S18 | 2e-12 | |
| cd00080 | 71 | cd00080, H3TH_StructSpec-5'-nucleases, H3TH domain | 7e-11 | |
| cd09860 | 170 | cd09860, PIN_T4-like, PIN domain of bacteriophage | 9e-11 | |
| cd06127 | 159 | cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam | 2e-10 | |
| smart00279 | 36 | smart00279, HhH2, Helix-hairpin-helix class 2 (Pol | 3e-10 | |
| PRK13401 | 82 | PRK13401, PRK13401, 30S ribosomal protein S18; Pro | 8e-10 | |
| PHA00439 | 286 | PHA00439, PHA00439, exonuclease | 2e-08 | |
| PRK13400 | 147 | PRK13400, PRK13400, 30S ribosomal protein S18; Pro | 6e-08 | |
| CHL00123 | 97 | CHL00123, rps6, ribosomal protein S6; Validated | 1e-07 | |
| PRK00109 | 138 | PRK00109, PRK00109, Holliday junction resolvase-li | 3e-06 | |
| PHA02567 | 304 | PHA02567, rnh, RnaseH; Provisional | 3e-06 | |
| pfam03652 | 134 | pfam03652, UPF0081, Uncharacterized protein family | 1e-05 | |
| cd05125 | 114 | cd05125, Mth938_2P1-like, Mth938_2P1-like domain | 2e-05 | |
| CHL00077 | 86 | CHL00077, rps18, ribosomal protein S18 | 4e-05 | |
| smart00479 | 169 | smart00479, EXOIII, exonuclease domain in DNA-poly | 4e-05 | |
| cd09901 | 73 | cd09901, H3TH_FEN1-like, H3TH domains of Flap endo | 7e-05 | |
| cd09907 | 70 | cd09907, H3TH_FEN1-Euk, H3TH domain of Flap Endonu | 1e-04 | |
| cd09897 | 68 | cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap | 1e-04 | |
| PRK03980 | 292 | PRK03980, PRK03980, flap endonuclease-1; Provision | 2e-04 | |
| TIGR03674 | 338 | TIGR03674, fen_arch, flap structure-specific endon | 4e-04 | |
| COG0847 | 243 | COG0847, DnaQ, DNA polymerase III, epsilon subunit | 5e-04 | |
| PTZ00217 | 393 | PTZ00217, PTZ00217, flap endonuclease-1; Provision | 0.001 | |
| cd09853 | 163 | cd09853, PIN_StructSpec-5'-nucleases, PIN domains | 0.003 |
| >gnl|CDD|236979 PRK11779, sbcB, exonuclease I; Provisional | Back alignment and domain information |
|---|
Score = 565 bits (1459), Expect = 0.0
Identities = 189/478 (39%), Positives = 275/478 (57%), Gaps = 15/478 (3%)
Query: 307 HNGNSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRAC 366
TFLW+DYETFG N DRP QFA IRTD LN I P++ YCKPA D+LP P A
Sbjct: 2 KKMQPTFLWHDYETFGANPALDRPAQFAGIRTDADLNIIGEPLVFYCKPADDYLPSPEAV 61
Query: 367 LITKITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPY 426
LIT ITPQ L G+PE +FA+ I F +PGT +GYN I FDDE+TR++F+RN +PY
Sbjct: 62 LITGITPQEALEKGLPEAEFAARIHAEFSQPGTCILGYNNIRFDDEVTRYIFYRNFYDPY 121
Query: 427 EREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDAL 486
REW+N SRWDL++V++A Y L P GI WP +G PSFKLEHL+ N + H+ AHDA+
Sbjct: 122 AREWQNGNSRWDLLDVVRACYALRPEGINWPENEDGLPSFKLEHLTKANGIEHENAHDAM 181
Query: 487 SDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYIS 546
SDV AT+ +A+LI+ P+LF+++ LR K+ V A I P +P +++ MF ++ S
Sbjct: 182 SDVYATIAMAKLIKQKQPKLFDYLFQLRNKRKVAALIDVPAMKPLVHVSGMFGAERGCTS 241
Query: 547 LMWPICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHL 603
+ P+ HP NKN +I +L DP L D + +R+ L ++ E +P+ ++HL
Sbjct: 242 WVAPLAWHPTNKNAVIVCDLAGDPSPLLELDADTLRERLYTRRADLAEGELPVPLKLVHL 301
Query: 604 NRSPIVISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIF-LDYKINNSDL 662
N+ P++ K L R D N+ + +F SD
Sbjct: 302 NKCPVLA-PAKTLRPEDAERLGIDRQQCLDNLALLRQNPDLREKVVAVFAEAEPFAPSD- 359
Query: 663 ELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETL 722
++D +LY+ F S D + I+R P+ L+ ++ F++ +LEEL+F YRARNF ETL
Sbjct: 360 --DVDAQLYDGFFSDADRRLMEIIRETEPENLAALDLTFDDPRLEELLFRYRARNFPETL 417
Query: 723 SYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
+E +RW ++R R + + + E+E L ++ + + K +L AL Y +
Sbjct: 418 DDEEQQRWLEHRRQRLTPE-----RLQQYAAELEQLAQEYEDDEEKQALLKALYDYAE 470
|
Length = 476 |
| >gnl|CDD|225477 COG2925, SbcB, Exonuclease I [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99841 cd06138, ExoI_N, N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins | Back alignment and domain information |
|---|
| >gnl|CDD|214682 smart00475, 53EXOc, 5'-3' exonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|233038 TIGR00593, pola, DNA polymerase I | Back alignment and domain information |
|---|
| >gnl|CDD|234694 PRK00228, PRK00228, hypothetical protein; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|223336 COG0258, Exo, 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|217150 pfam02622, DUF179, Uncharacterized ACR, COG1678 | Back alignment and domain information |
|---|
| >gnl|CDD|224592 COG1678, COG1678, Putative transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
| >gnl|CDD|189029 cd09859, PIN_53EXO, PIN domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|237877 PRK14976, PRK14976, 5'-3' exonuclease; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|219829 pfam08411, Exonuc_X-T_C, Exonuclease C-terminal | Back alignment and domain information |
|---|
| >gnl|CDD|234659 PRK00137, rplI, 50S ribosomal protein L9; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|145734 pfam02739, 5_3_exonuc_N, 5'-3' exonuclease, N-terminal resolvase-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|223436 COG0359, RplI, Ribosomal protein L9 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|181896 PRK09482, PRK09482, flap endonuclease-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|129262 TIGR00158, L9, ribosomal protein L9 | Back alignment and domain information |
|---|
| >gnl|CDD|179034 PRK00453, rpsF, 30S ribosomal protein S6; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|240187 cd05560, Xcc1710_like, Xcc1710_like family, specific to proteobacteria | Back alignment and domain information |
|---|
| >gnl|CDD|223437 COG0360, RpsF, Ribosomal protein S6 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|178997 PRK00391, rpsR, 30S ribosomal protein S18; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|188618 cd09898, H3TH_53EXO, H3TH domain of the 5'-3' exonuclease of Taq DNA polymerase I and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|214378 CHL00160, rpl9, ribosomal protein L9; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|216458 pfam01367, 5_3_exonuc, 5'-3' exonuclease, C-terminal SAM fold | Back alignment and domain information |
|---|
| >gnl|CDD|226260 COG3737, COG3737, Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >gnl|CDD|216388 pfam01250, Ribosomal_S6, Ribosomal protein S6 | Back alignment and domain information |
|---|
| >gnl|CDD|223316 COG0238, RpsR, Ribosomal protein S18 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >gnl|CDD|146531 pfam03948, Ribosomal_L9_C, Ribosomal protein L9, C-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|201708 pfam01281, Ribosomal_L9_N, Ribosomal protein L9, N-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|238152 cd00248, Mth938-like, Mth938-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|218085 pfam04430, DUF498, Protein of unknown function (DUF498/DUF598) | Back alignment and domain information |
|---|
| >gnl|CDD|129270 TIGR00166, S6, ribosomal protein S6 | Back alignment and domain information |
|---|
| >gnl|CDD|173004 PRK14538, PRK14538, putative bifunctional signaling protein/50S ribosomal protein L9; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|232851 TIGR00165, S18, ribosomal protein S18 | Back alignment and domain information |
|---|
| >gnl|CDD|189019 cd00008, PIN_53EXO-like, PIN domains of the 5'-3' exonucleases of DNA polymerase I, bacteriophage T4 RNase H and T5-5' nucleases, and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|216200 pfam00929, RNase_T, Exonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|201589 pfam01084, Ribosomal_S18, Ribosomal protein S18 | Back alignment and domain information |
|---|
| >gnl|CDD|188616 cd00080, H3TH_StructSpec-5'-nucleases, H3TH domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination | Back alignment and domain information |
|---|
| >gnl|CDD|189030 cd09860, PIN_T4-like, PIN domain of bacteriophage T3, T4 RNase H, T5-5'nuclease, and homologs | Back alignment and domain information |
|---|
| >gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family | Back alignment and domain information |
|---|
| >gnl|CDD|197623 smart00279, HhH2, Helix-hairpin-helix class 2 (Pol1 family) motifs | Back alignment and domain information |
|---|
| >gnl|CDD|184031 PRK13401, PRK13401, 30S ribosomal protein S18; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|222794 PHA00439, PHA00439, exonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|184030 PRK13400, PRK13400, 30S ribosomal protein S18; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177046 CHL00123, rps6, ribosomal protein S6; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|234639 PRK00109, PRK00109, Holliday junction resolvase-like protein; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|222882 PHA02567, rnh, RnaseH; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217659 pfam03652, UPF0081, Uncharacterized protein family (UPF0081) | Back alignment and domain information |
|---|
| >gnl|CDD|240161 cd05125, Mth938_2P1-like, Mth938_2P1-like domain | Back alignment and domain information |
|---|
| >gnl|CDD|177016 CHL00077, rps18, ribosomal protein S18 | Back alignment and domain information |
|---|
| >gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases | Back alignment and domain information |
|---|
| >gnl|CDD|188621 cd09901, H3TH_FEN1-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases: FEN1 (eukaryotic) and EXO1 | Back alignment and domain information |
|---|
| >gnl|CDD|188627 cd09907, H3TH_FEN1-Euk, H3TH domain of Flap Endonuclease-1, a structure-specific, divalent-metal-ion dependent, 5' nuclease: Eukaryotic homologs | Back alignment and domain information |
|---|
| >gnl|CDD|188617 cd09897, H3TH_FEN1-XPG-like, H3TH domains of Flap endonuclease-1 (FEN1)-like structure specific 5' nucleases | Back alignment and domain information |
|---|
| >gnl|CDD|235185 PRK03980, PRK03980, flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|234306 TIGR03674, fen_arch, flap structure-specific endonuclease | Back alignment and domain information |
|---|
| >gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|240317 PTZ00217, PTZ00217, flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|189023 cd09853, PIN_StructSpec-5'-nucleases, PIN domains of structure-specific 5' nucleases (or flap endonuclease-1-like) involved in DNA replication, repair, and recombination | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1428 | |||
| COG2925 | 475 | SbcB Exonuclease I [DNA replication, recombination | 100.0 | |
| PRK11779 | 476 | sbcB exonuclease I; Provisional | 100.0 | |
| PF08411 | 269 | Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IP | 100.0 | |
| PRK14976 | 281 | 5'-3' exonuclease; Provisional | 100.0 | |
| PRK09482 | 256 | flap endonuclease-like protein; Provisional | 100.0 | |
| smart00475 | 259 | 53EXOc 5'-3' exonuclease. | 100.0 | |
| TIGR00593 | 887 | pola DNA polymerase I. This family is based on the | 100.0 | |
| cd00008 | 240 | 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonucleas | 100.0 | |
| PRK05755 | 880 | DNA polymerase I; Provisional | 100.0 | |
| COG0258 | 310 | Exo 5'-3' exonuclease (including N-terminal domain | 100.0 | |
| COG1678 | 194 | Putative transcriptional regulator [Transcription] | 100.0 | |
| PHA00439 | 286 | exonuclease | 100.0 | |
| PRK00228 | 191 | hypothetical protein; Validated | 100.0 | |
| PHA02567 | 304 | rnh RnaseH; Provisional | 100.0 | |
| PF02622 | 161 | DUF179: Uncharacterized ACR, COG1678; InterPro: IP | 100.0 | |
| PTZ00217 | 393 | flap endonuclease-1; Provisional | 100.0 | |
| TIGR00158 | 148 | L9 ribosomal protein L9. Ribosomal protein L9 appe | 100.0 | |
| TIGR03674 | 338 | fen_arch flap structure-specific endonuclease. End | 100.0 | |
| CHL00160 | 153 | rpl9 ribosomal protein L9; Provisional | 100.0 | |
| PF02739 | 169 | 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolv | 100.0 | |
| PRK00137 | 147 | rplI 50S ribosomal protein L9; Reviewed | 100.0 | |
| COG0359 | 148 | RplI Ribosomal protein L9 [Translation, ribosomal | 100.0 | |
| PRK03980 | 292 | flap endonuclease-1; Provisional | 100.0 | |
| cd06138 | 183 | ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o | 100.0 | |
| COG3737 | 127 | Uncharacterized conserved protein [Function unknow | 99.98 | |
| cd00128 | 316 | XPG Xeroderma pigmentosum G N- and I-regions (XPGN | 99.97 | |
| cd05560 | 109 | Xcc1710_like Xcc1710_like family, specific to prot | 99.97 | |
| cd00248 | 109 | Mth938-like Mth938-like domain. The members of thi | 99.97 | |
| cd05125 | 114 | Mth938_2P1-like Mth938_2P1-like domain. This model | 99.97 | |
| PF04430 | 110 | DUF498: Protein of unknown function (DUF498/DUF598 | 99.96 | |
| PRK14538 | 838 | putative bifunctional signaling protein/50S riboso | 99.96 | |
| cd05126 | 117 | Mth938 Mth938 domain. Mth938 is a hypothetical pro | 99.95 | |
| PRK07942 | 232 | DNA polymerase III subunit epsilon; Provisional | 99.94 | |
| PRK06310 | 250 | DNA polymerase III subunit epsilon; Validated | 99.93 | |
| PRK09146 | 239 | DNA polymerase III subunit epsilon; Validated | 99.93 | |
| PRK06309 | 232 | DNA polymerase III subunit epsilon; Validated | 99.93 | |
| KOG3363|consensus | 196 | 99.92 | ||
| PRK09145 | 202 | DNA polymerase III subunit epsilon; Validated | 99.92 | |
| PF01367 | 101 | 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold | 99.92 | |
| cd06134 | 189 | RNaseT DEDDh 3'-5' exonuclease domain of RNase T. | 99.92 | |
| TIGR00573 | 217 | dnaq exonuclease, DNA polymerase III, epsilon subu | 99.91 | |
| PRK07740 | 244 | hypothetical protein; Provisional | 99.91 | |
| PRK05168 | 211 | ribonuclease T; Provisional | 99.91 | |
| TIGR01298 | 200 | RNaseT ribonuclease T. in gamma-subdivision Proteo | 99.91 | |
| cd06136 | 177 | TREX1_2 DEDDh 3'-5' exonuclease domain of three pr | 99.91 | |
| PRK06063 | 313 | DNA polymerase III subunit epsilon; Provisional | 99.91 | |
| PRK08517 | 257 | DNA polymerase III subunit epsilon; Provisional | 99.91 | |
| TIGR01406 | 225 | dnaQ_proteo DNA polymerase III, epsilon subunit, P | 99.9 | |
| PRK05711 | 240 | DNA polymerase III subunit epsilon; Provisional | 99.9 | |
| cd06131 | 167 | DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl | 99.9 | |
| smart00479 | 169 | EXOIII exonuclease domain in DNA-polymerase alpha | 99.9 | |
| PRK06807 | 313 | DNA polymerase III subunit epsilon; Validated | 99.89 | |
| PRK07883 | 557 | hypothetical protein; Validated | 99.89 | |
| COG0238 | 75 | RpsR Ribosomal protein S18 [Translation, ribosomal | 99.88 | |
| PRK06195 | 309 | DNA polymerase III subunit epsilon; Validated | 99.88 | |
| PRK07247 | 195 | DNA polymerase III subunit epsilon; Validated | 99.87 | |
| PRK05601 | 377 | DNA polymerase III subunit epsilon; Validated | 99.87 | |
| PRK05359 | 181 | oligoribonuclease; Provisional | 99.87 | |
| cd06130 | 156 | DNA_pol_III_epsilon_like an uncharacterized bacter | 99.87 | |
| PRK07748 | 207 | sporulation inhibitor KapD; Provisional | 99.86 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.86 | |
| PRK09182 | 294 | DNA polymerase III subunit epsilon; Validated | 99.86 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.86 | |
| cd06133 | 176 | ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o | 99.85 | |
| cd06127 | 159 | DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh | 99.85 | |
| COG2176 | 1444 | PolC DNA polymerase III, alpha subunit (gram-posit | 99.85 | |
| cd06135 | 173 | Orn DEDDh 3'-5' exonuclease domain of oligoribonuc | 99.85 | |
| TIGR01405 | 1213 | polC_Gram_pos DNA polymerase III, alpha chain, Gra | 99.85 | |
| KOG2519|consensus | 449 | 99.85 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 99.85 | |
| PRK07983 | 219 | exodeoxyribonuclease X; Provisional | 99.83 | |
| cd06137 | 161 | DEDDh_RNase DEDDh 3'-5' exonuclease domain of the | 99.82 | |
| PRK06722 | 281 | exonuclease; Provisional | 99.81 | |
| TIGR00165 | 70 | S18 ribosomal protein S18. This ribosomal small su | 99.81 | |
| PRK00391 | 79 | rpsR 30S ribosomal protein S18; Reviewed | 99.81 | |
| PRK13401 | 82 | 30S ribosomal protein S18; Provisional | 99.8 | |
| COG0360 | 112 | RpsF Ribosomal protein S6 [Translation, ribosomal | 99.8 | |
| PRK13400 | 147 | 30S ribosomal protein S18; Provisional | 99.79 | |
| cd06149 | 157 | ISG20 DEDDh 3'-5' exonuclease domain of Interferon | 99.78 | |
| PF00929 | 164 | RNase_T: Exonuclease; InterPro: IPR013520 This ent | 99.77 | |
| COG0847 | 243 | DnaQ DNA polymerase III, epsilon subunit and relat | 99.77 | |
| cd06144 | 152 | REX4_like DEDDh 3'-5' exonuclease domain of RNA ex | 99.76 | |
| KOG4607|consensus | 222 | 99.75 | ||
| cd06145 | 150 | REX1_like DEDDh 3'-5' exonuclease domain of RNA ex | 99.75 | |
| PRK00448 | 1437 | polC DNA polymerase III PolC; Validated | 99.75 | |
| PF01281 | 48 | Ribosomal_L9_N: Ribosomal protein L9, N-terminal d | 99.75 | |
| CHL00123 | 97 | rps6 ribosomal protein S6; Validated | 99.75 | |
| TIGR00166 | 93 | S6 ribosomal protein S6. MRP17 protein is a compon | 99.74 | |
| PTZ00315 | 582 | 2'-phosphotransferase; Provisional | 99.72 | |
| PRK00453 | 108 | rpsF 30S ribosomal protein S6; Reviewed | 99.71 | |
| CHL00077 | 86 | rps18 ribosomal protein S18 | 99.71 | |
| PRK14074 | 257 | rpsF 30S ribosomal protein S6; Provisional | 99.7 | |
| cd00080 | 75 | HhH2_motif Helix-hairpin-helix class 2 (Pol1 famil | 99.7 | |
| TIGR00600 | 1034 | rad2 DNA excision repair protein (rad2). All prote | 99.69 | |
| PF01250 | 92 | Ribosomal_S6: Ribosomal protein S6; InterPro: IPR0 | 99.66 | |
| PF03948 | 87 | Ribosomal_L9_C: Ribosomal protein L9, C-terminal d | 99.65 | |
| COG1949 | 184 | Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA | 99.6 | |
| PF01084 | 54 | Ribosomal_S18: Ribosomal protein S18; InterPro: IP | 99.51 | |
| KOG2518|consensus | 556 | 99.42 | ||
| KOG3242|consensus | 208 | 99.41 | ||
| smart00279 | 36 | HhH2 Helix-hairpin-helix class 2 (Pol1 family) mot | 99.39 | |
| COG1504 | 121 | Uncharacterized conserved protein [Function unknow | 99.35 | |
| KOG4708|consensus | 141 | 99.21 | ||
| KOG2520|consensus | 815 | 99.0 | ||
| KOG3162|consensus | 159 | 98.96 | ||
| cd05160 | 199 | DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain | 98.83 | |
| KOG2249|consensus | 280 | 98.4 | ||
| cd05781 | 188 | DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of | 98.3 | |
| cd06143 | 174 | PAN2_exo DEDDh 3'-5' exonuclease domain of the euk | 98.22 | |
| KOG0542|consensus | 280 | 98.19 | ||
| PF13482 | 164 | RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A | 98.11 | |
| cd06125 | 96 | DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas | 98.11 | |
| cd05780 | 195 | DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom | 98.11 | |
| PF00867 | 94 | XPG_I: XPG I-region; InterPro: IPR006086 This entr | 98.09 | |
| cd05779 | 204 | DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai | 98.0 | |
| cd05785 | 207 | DNA_polB_like2_exo Uncharacterized bacterial subgr | 97.82 | |
| cd06139 | 193 | DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease | 97.77 | |
| COG5018 | 210 | KapD Inhibitor of the KinA pathway to sporulation, | 97.56 | |
| KOG4793|consensus | 318 | 97.55 | ||
| KOG4021|consensus | 239 | 97.54 | ||
| PRK05755 | 880 | DNA polymerase I; Provisional | 97.51 | |
| COG3359 | 278 | Predicted exonuclease [DNA replication, recombinat | 97.41 | |
| cd05782 | 208 | DNA_polB_like1_exo Uncharacterized bacterial subgr | 97.36 | |
| COG0816 | 141 | Predicted endonuclease involved in recombination ( | 97.24 | |
| cd05783 | 204 | DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of | 97.01 | |
| cd05777 | 230 | DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain | 97.01 | |
| PF10108 | 209 | DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate | 96.87 | |
| PF04857 | 262 | CAF1: CAF1 family ribonuclease; InterPro: IPR00694 | 96.86 | |
| KOG2248|consensus | 380 | 96.73 | ||
| smart00484 | 73 | XPGI Xeroderma pigmentosum G I-region. domain in n | 96.38 | |
| PF01612 | 176 | DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 | 96.34 | |
| KOG0304|consensus | 239 | 96.29 | ||
| cd05784 | 193 | DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of | 96.29 | |
| PRK05762 | 786 | DNA polymerase II; Reviewed | 96.07 | |
| smart00485 | 99 | XPGN Xeroderma pigmentosum G N-region. domain in n | 95.93 | |
| PF03652 | 135 | UPF0081: Uncharacterised protein family (UPF0081); | 95.82 | |
| smart00486 | 471 | POLBc DNA polymerase type-B family. DNA polymerase | 95.65 | |
| PTZ00166 | 1054 | DNA polymerase delta catalytic subunit; Provisiona | 95.63 | |
| PHA02528 | 881 | 43 DNA polymerase; Provisional | 95.55 | |
| PF00752 | 101 | XPG_N: XPG N-terminal domain; InterPro: IPR006085 | 95.32 | |
| PF12826 | 64 | HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS | 95.17 | |
| PHA02570 | 220 | dexA exonuclease; Provisional | 95.14 | |
| cd05778 | 231 | DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease | 95.07 | |
| cd00007 | 155 | 35EXOc 3'-5' exonuclease. The 35EXOc domain is res | 94.82 | |
| PHA02524 | 498 | 43A DNA polymerase subunit A; Provisional | 94.7 | |
| PRK00109 | 138 | Holliday junction resolvase-like protein; Reviewed | 94.43 | |
| TIGR00250 | 130 | RNAse_H_YqgF RNAse H-fold protein YqgF. This prote | 94.2 | |
| PF03104 | 325 | DNA_pol_B_exo1: DNA polymerase family B, exonuclea | 93.77 | |
| PF12813 | 246 | XPG_I_2: XPG domain containing | 93.33 | |
| TIGR03491 | 457 | RecB family nuclease, putative, TM0106 family. Mem | 93.12 | |
| PF05991 | 166 | NYN_YacP: YacP-like NYN domain; InterPro: IPR01029 | 92.68 | |
| cd06146 | 193 | mut-7_like_exo DEDDy 3'-5' exonuclease domain of C | 92.06 | |
| TIGR00600 | 1034 | rad2 DNA excision repair protein (rad2). All prote | 91.92 | |
| cd05776 | 234 | DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas | 91.27 | |
| KOG1798|consensus | 2173 | 90.69 | ||
| cd06141 | 170 | WRN_exo DEDDy 3'-5' exonuclease domain of WRN and | 90.52 | |
| cd06129 | 161 | RNaseD_like DEDDy 3'-5' exonuclease domain of RNas | 90.31 | |
| PRK00116 | 192 | ruvA Holliday junction DNA helicase RuvA; Reviewed | 89.78 | |
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 89.49 | |
| COG0749 | 593 | PolA DNA polymerase I - 3'-5' exonuclease and poly | 88.78 | |
| PF11074 | 130 | DUF2779: Domain of unknown function(DUF2779); Inte | 87.52 | |
| PF14520 | 60 | HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU | 86.59 | |
| PF00633 | 30 | HHH: Helix-hairpin-helix motif; InterPro: IPR00044 | 85.52 | |
| PRK14669 | 624 | uvrC excinuclease ABC subunit C; Provisional | 85.34 | |
| COG0349 | 361 | Rnd Ribonuclease D [Translation, ribosomal structu | 85.3 | |
| PRK14670 | 574 | uvrC excinuclease ABC subunit C; Provisional | 84.63 | |
| TIGR00084 | 191 | ruvA Holliday junction DNA helicase, RuvA subunit. | 84.22 | |
| PRK14667 | 567 | uvrC excinuclease ABC subunit C; Provisional | 84.19 | |
| PRK14605 | 194 | ruvA Holliday junction DNA helicase RuvA; Provisio | 83.24 | |
| cd06140 | 178 | DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' | 82.81 | |
| TIGR01388 | 367 | rnd ribonuclease D. This model describes ribonucle | 82.35 | |
| PF10391 | 52 | DNA_pol_lambd_f: Fingers domain of DNA polymerase | 82.35 | |
| PRK14671 | 621 | uvrC excinuclease ABC subunit C; Provisional | 81.77 | |
| PRK14602 | 203 | ruvA Holliday junction DNA helicase RuvA; Provisio | 81.59 | |
| TIGR00194 | 574 | uvrC excinuclease ABC, C subunit. This family cons | 81.55 | |
| PRK14666 | 694 | uvrC excinuclease ABC subunit C; Provisional | 80.12 |
| >COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-133 Score=1107.92 Aligned_cols=460 Identities=40% Similarity=0.726 Sum_probs=451.5
Q ss_pred CceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHH
Q psy2882 310 NSTFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASI 389 (1428)
Q Consensus 310 ~~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~ 389 (1428)
..+|+|||+||+|.+|+.||+.|||+||||.++|+|++|.++||+|+.|++|+|+|++|||||||++.++|++|++|+.+
T Consensus 8 ~~tF~~yDYETfG~~Pa~DRPaQFAgiRTD~~~NiIgeP~~fyCkpsdDyLP~P~a~LITGITPQ~~~~~G~~E~~F~~~ 87 (475)
T COG2925 8 QPTFLFYDYETFGVHPALDRPAQFAGIRTDIEFNIIGEPIVFYCKPADDYLPQPGAVLITGITPQEAREKGINEAAFAAR 87 (475)
T ss_pred CCcEEEEehhhcCCCcccccchhhheeeccccccccCCCeEEEecCccccCCCCCceeeecCCHHHHHhcCCChHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChH
Q psy2882 390 IEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLE 469 (1428)
Q Consensus 390 i~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe 469 (1428)
|+..|++|+||++||||++||+||+|+.|||||+|||.++|+|||||||++|++|+||+|||+||+||.+++|.+|||||
T Consensus 88 I~~~ls~P~Tcv~GYNniRFDDEvtRy~fyRNF~DPYa~sWqngNSRWDLLD~~RacyALRPeGI~Wp~n~dG~pSFkLE 167 (475)
T COG2925 88 IHAELTQPNTCVLGYNNIRFDDEVTRYIFYRNFYDPYAWSWQNGNSRWDLLDVVRACYALRPEGINWPENDDGLPSFKLE 167 (475)
T ss_pred HHHHhCCCCeeeecccccccchHHHHHHHHHhcCchhhhhhcCCCchhHHHHHHHHHHhcCcccCCCCcCCCCCcchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHcCCCCCCCCChHHHHHHHHHHHHHHHhhCchhHHHHHhhcCHHHHHHHhCCCCCcceEEEeeccCcCCCCceEEE
Q psy2882 470 HLSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMW 549 (1428)
Q Consensus 470 ~L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~~p~l~~~~~~~~~k~~v~~~~~~~~~~p~~~vs~~~~~~~~~~~~~~ 549 (1428)
+|+++|||+|.+|||||+||+|||++|++++++||+||+|+|.+|+|+++.++||+.+++|+||||||||+.+||++||+
T Consensus 168 hLt~ANgieH~nAHdAmsDVyATIamAklvk~~QPrLfdy~f~~R~K~~~~~lid~~~~~PlvHVSgm~ga~r~~~s~V~ 247 (475)
T COG2925 168 HLTKANGIEHSNAHDAMSDVYATIAMAKLVKTAQPRLFDYLFQLRKKHKLLALIDIPNMQPLVHVSGMFGAERGNTSWVL 247 (475)
T ss_pred HHhhccccccchhhHHHHHHHHHHHHHHHHHhhCcHHHHHHHHhccHHHHHHHhcccccCceEEeecccchhhCCceEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeccCCCCceEEEEeCCCCchhhhcCCHHHHHHHhcccccCCCCC---CCeeEEEecCCccccccccCCChhhhhhhCC
Q psy2882 550 PICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED---IPISMIHLNRSPIVISNLKVLSSNLMFRYKF 626 (1428)
Q Consensus 550 p~~~~p~~~n~~i~~dL~~d~~~l~~~~~~~l~~~l~~~~~~~~~~---~plk~i~~Nk~P~~~~p~~~l~~~~~~rl~i 626 (1428)
||+|||+|+|++|||||..||++|++|++++|++||||++.+|+|| +|+|.|||||||+ |+|+++|++++++||||
T Consensus 248 PLaWHP~N~NalIv~DL~~Di~~Ll~l~a~~lr~rLyT~~~dL~eg~~~vP~KlvHiNkcPi-lap~ktL~~eda~RlGi 326 (475)
T COG2925 248 PLAWHPTNRNAVIVCDLAGDISPLLELDADTLRERLYTRKADLGEGELAVPVKLVHINKCPI-LAPAKTLRPEDADRLGI 326 (475)
T ss_pred eecccCCCCceEEEEEccCChHHHHhhCHHHHHHHhccccccccCCcccCceEEEEecCCCe-ecchhhcChhhhhhcCC
Confidence 9999999999999999999999999999999999999999999999 8999999999999 99999999999999999
Q ss_pred CHHHHHHHHHhHHhHhhChHHHHHHHHHhhccC-CCCCCChhhhhhcCCCChhHHHHHHHHHcCChhcccccCCCCCccc
Q psy2882 627 DLNCAFKNIKCASSILNNTYIWKKIFLDYKINN-SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKK 705 (1428)
Q Consensus 627 d~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-~~~~~d~d~~lY~gF~s~~D~~~~~~~~~~~~~~l~~~~~~f~D~R 705 (1428)
|.+.|++|++. |+.+|++++|+.++|++.. |+++.|||++||+||||++||+.|+++|.++|++|+++...|.|+|
T Consensus 327 dr~~c~~~~~~---l~~~p~~rekv~~if~~e~~f~~~~dvd~~LY~GFf~~~Dr~~~~ilR~~~pe~La~~~~~f~D~R 403 (475)
T COG2925 327 DRQHCLDNLEL---LRENPDVREKVVAIFAEEEPFNPSDDVDAQLYNGFFSDADRAAMKILRETEPENLAALDITFVDKR 403 (475)
T ss_pred cHHHHHHHHHH---HhhCchHHHHHHHHHhccccCCCccchhHHHHccccCHHHHHHHHHHHhCChhhhhhccCCccchh
Confidence 99999999999 9999999999999999765 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhcCcc--hHHHHHHHHhhhhh
Q psy2882 706 LEELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH--DTKILNALLMYGKI 779 (1428)
Q Consensus 706 l~~l~fr~~arn~p~~L~~~e~~~w~~~~~~rl~~~~~~~~~~~~~~~~i~~L~~~~~~~--~~~lL~~L~~Y~~i 779 (1428)
|.+|||||||||||+|||.+||++|.+||++||.. ....|...++.+.++++.+ |+.+|++|++|++.
T Consensus 404 l~~LlFrYRARnfp~tLt~~Eq~rW~~~rr~~l~~------~~~~~~~tl~~~~~~~~~d~~k~~lL~~l~~y~~~ 473 (475)
T COG2925 404 LEELLFRYRARNFPETLTDAEQQRWLEHRRQRLTP------ELQGYELTLQALVQEHSDDKEKLALLKALYEYAAE 473 (475)
T ss_pred HHHHHHHHHhhcCccccCHHHHHHHHHHHHHhcCh------hhhhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999987 3677888888889888888 99999999999975
|
|
| >PRK11779 sbcB exonuclease I; Provisional | Back alignment and domain information |
|---|
| >PF08411 Exonuc_X-T_C: Exonuclease C-terminal; InterPro: IPR013620 This bacterial domain is found at the C terminus of exodeoxyribonuclease I/Exonuclease I (IPR013520 from INTERPRO), which is a single-strand specific DNA nuclease affecting recombination and expression pathways | Back alignment and domain information |
|---|
| >PRK14976 5'-3' exonuclease; Provisional | Back alignment and domain information |
|---|
| >PRK09482 flap endonuclease-like protein; Provisional | Back alignment and domain information |
|---|
| >smart00475 53EXOc 5'-3' exonuclease | Back alignment and domain information |
|---|
| >TIGR00593 pola DNA polymerase I | Back alignment and domain information |
|---|
| >cd00008 53EXOc 5'-3' exonuclease; T5 type 5'-3' exonuclease domains may co-occur with DNA polymerase I (Pol I) domains, or be part of Pol I containing complexes | Back alignment and domain information |
|---|
| >PRK05755 DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >COG0258 Exo 5'-3' exonuclease (including N-terminal domain of PolI) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1678 Putative transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
| >PHA00439 exonuclease | Back alignment and domain information |
|---|
| >PRK00228 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PHA02567 rnh RnaseH; Provisional | Back alignment and domain information |
|---|
| >PF02622 DUF179: Uncharacterized ACR, COG1678; InterPro: IPR003774 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
| >PTZ00217 flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
| >TIGR00158 L9 ribosomal protein L9 | Back alignment and domain information |
|---|
| >TIGR03674 fen_arch flap structure-specific endonuclease | Back alignment and domain information |
|---|
| >CHL00160 rpl9 ribosomal protein L9; Provisional | Back alignment and domain information |
|---|
| >PF02739 5_3_exonuc_N: 5'-3' exonuclease, N-terminal resolvase-like domain; InterPro: IPR020046 The N-terminal and internal 5'3'-exonuclease domains are commonly found together, and are most often associated with 5' to 3' nuclease activities | Back alignment and domain information |
|---|
| >PRK00137 rplI 50S ribosomal protein L9; Reviewed | Back alignment and domain information |
|---|
| >COG0359 RplI Ribosomal protein L9 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK03980 flap endonuclease-1; Provisional | Back alignment and domain information |
|---|
| >cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins | Back alignment and domain information |
|---|
| >COG3737 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >cd00128 XPG Xeroderma pigmentosum G N- and I-regions (XPGN, XPGI); contains the HhH2 motif; domain in nucleases | Back alignment and domain information |
|---|
| >cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria | Back alignment and domain information |
|---|
| >cd00248 Mth938-like Mth938-like domain | Back alignment and domain information |
|---|
| >cd05125 Mth938_2P1-like Mth938_2P1-like domain | Back alignment and domain information |
|---|
| >PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1 | Back alignment and domain information |
|---|
| >PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional | Back alignment and domain information |
|---|
| >cd05126 Mth938 Mth938 domain | Back alignment and domain information |
|---|
| >PRK07942 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK06310 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK09146 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK06309 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >KOG3363|consensus | Back alignment and domain information |
|---|
| >PRK09145 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF01367 5_3_exonuc: 5'-3' exonuclease, C-terminal SAM fold; InterPro: IPR020045 This entry represents the C-terminal domain of 5' to 3' exonucleases | Back alignment and domain information |
|---|
| >cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T | Back alignment and domain information |
|---|
| >TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family | Back alignment and domain information |
|---|
| >PRK07740 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK05168 ribonuclease T; Provisional | Back alignment and domain information |
|---|
| >TIGR01298 RNaseT ribonuclease T | Back alignment and domain information |
|---|
| >cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins | Back alignment and domain information |
|---|
| >PRK06063 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >PRK08517 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial | Back alignment and domain information |
|---|
| >PRK05711 DNA polymerase III subunit epsilon; Provisional | Back alignment and domain information |
|---|
| >cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins | Back alignment and domain information |
|---|
| >smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases | Back alignment and domain information |
|---|
| >PRK06807 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07883 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >COG0238 RpsR Ribosomal protein S18 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK06195 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07247 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK05601 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK05359 oligoribonuclease; Provisional | Back alignment and domain information |
|---|
| >cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III | Back alignment and domain information |
|---|
| >PRK07748 sporulation inhibitor KapD; Provisional | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK09182 DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins | Back alignment and domain information |
|---|
| >cd06127 DEDDh DEDDh 3'-5' exonuclease domain family | Back alignment and domain information |
|---|
| >COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins | Back alignment and domain information |
|---|
| >TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type | Back alignment and domain information |
|---|
| >KOG2519|consensus | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PRK07983 exodeoxyribonuclease X; Provisional | Back alignment and domain information |
|---|
| >cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins | Back alignment and domain information |
|---|
| >PRK06722 exonuclease; Provisional | Back alignment and domain information |
|---|
| >TIGR00165 S18 ribosomal protein S18 | Back alignment and domain information |
|---|
| >PRK00391 rpsR 30S ribosomal protein S18; Reviewed | Back alignment and domain information |
|---|
| >PRK13401 30S ribosomal protein S18; Provisional | Back alignment and domain information |
|---|
| >COG0360 RpsF Ribosomal protein S6 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK13400 30S ribosomal protein S18; Provisional | Back alignment and domain information |
|---|
| >cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III | Back alignment and domain information |
|---|
| >COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins | Back alignment and domain information |
|---|
| >KOG4607|consensus | Back alignment and domain information |
|---|
| >cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins | Back alignment and domain information |
|---|
| >PRK00448 polC DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
| >PF01281 Ribosomal_L9_N: Ribosomal protein L9, N-terminal domain; InterPro: IPR020070 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
| >CHL00123 rps6 ribosomal protein S6; Validated | Back alignment and domain information |
|---|
| >TIGR00166 S6 ribosomal protein S6 | Back alignment and domain information |
|---|
| >PTZ00315 2'-phosphotransferase; Provisional | Back alignment and domain information |
|---|
| >PRK00453 rpsF 30S ribosomal protein S6; Reviewed | Back alignment and domain information |
|---|
| >CHL00077 rps18 ribosomal protein S18 | Back alignment and domain information |
|---|
| >PRK14074 rpsF 30S ribosomal protein S6; Provisional | Back alignment and domain information |
|---|
| >cd00080 HhH2_motif Helix-hairpin-helix class 2 (Pol1 family) motif | Back alignment and domain information |
|---|
| >TIGR00600 rad2 DNA excision repair protein (rad2) | Back alignment and domain information |
|---|
| >PF01250 Ribosomal_S6: Ribosomal protein S6; InterPro: IPR000529 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
| >PF03948 Ribosomal_L9_C: Ribosomal protein L9, C-terminal domain; InterPro: IPR020069 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
| >COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification] | Back alignment and domain information |
|---|
| >PF01084 Ribosomal_S18: Ribosomal protein S18; InterPro: IPR001648 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
| >KOG2518|consensus | Back alignment and domain information |
|---|
| >KOG3242|consensus | Back alignment and domain information |
|---|
| >smart00279 HhH2 Helix-hairpin-helix class 2 (Pol1 family) motifs | Back alignment and domain information |
|---|
| >COG1504 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
| >KOG4708|consensus | Back alignment and domain information |
|---|
| >KOG2520|consensus | Back alignment and domain information |
|---|
| >KOG3162|consensus | Back alignment and domain information |
|---|
| >cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >KOG2249|consensus | Back alignment and domain information |
|---|
| >cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 | Back alignment and domain information |
|---|
| >KOG0542|consensus | Back alignment and domain information |
|---|
| >PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A | Back alignment and domain information |
|---|
| >cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily | Back alignment and domain information |
|---|
| >cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >PF00867 XPG_I: XPG I-region; InterPro: IPR006086 This entry represents endonucleases that cleave the 5'-overhanging flap structure that is generated by displacement synthesis when DNA polymerase encounters the 5'-end of a downstream Okazaki fragment | Back alignment and domain information |
|---|
| >cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases | Back alignment and domain information |
|---|
| >COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only] | Back alignment and domain information |
|---|
| >KOG4793|consensus | Back alignment and domain information |
|---|
| >KOG4021|consensus | Back alignment and domain information |
|---|
| >PRK05755 DNA polymerase I; Provisional | Back alignment and domain information |
|---|
| >COG3359 Predicted exonuclease [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases | Back alignment and domain information |
|---|
| >COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B | Back alignment and domain information |
|---|
| >cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases | Back alignment and domain information |
|---|
| >cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins | Back alignment and domain information |
|---|
| >PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation | Back alignment and domain information |
|---|
| >KOG2248|consensus | Back alignment and domain information |
|---|
| >smart00484 XPGI Xeroderma pigmentosum G I-region | Back alignment and domain information |
|---|
| >PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides | Back alignment and domain information |
|---|
| >KOG0304|consensus | Back alignment and domain information |
|---|
| >cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases | Back alignment and domain information |
|---|
| >PRK05762 DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >smart00485 XPGN Xeroderma pigmentosum G N-region | Back alignment and domain information |
|---|
| >PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination | Back alignment and domain information |
|---|
| >smart00486 POLBc DNA polymerase type-B family | Back alignment and domain information |
|---|
| >PTZ00166 DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >PHA02528 43 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer | Back alignment and domain information |
|---|
| >PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B | Back alignment and domain information |
|---|
| >PHA02570 dexA exonuclease; Provisional | Back alignment and domain information |
|---|
| >cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >cd00007 35EXOc 3'-5' exonuclease | Back alignment and domain information |
|---|
| >PHA02524 43A DNA polymerase subunit A; Provisional | Back alignment and domain information |
|---|
| >PRK00109 Holliday junction resolvase-like protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF | Back alignment and domain information |
|---|
| >PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >PF12813 XPG_I_2: XPG domain containing | Back alignment and domain information |
|---|
| >TIGR03491 RecB family nuclease, putative, TM0106 family | Back alignment and domain information |
|---|
| >PF05991 NYN_YacP: YacP-like NYN domain; InterPro: IPR010298 This family consists of several hypothetical bacterial proteins as well as some uncharacterised sequences from Arabidopsis thaliana | Back alignment and domain information |
|---|
| >cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins | Back alignment and domain information |
|---|
| >TIGR00600 rad2 DNA excision repair protein (rad2) | Back alignment and domain information |
|---|
| >cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase | Back alignment and domain information |
|---|
| >KOG1798|consensus | Back alignment and domain information |
|---|
| >cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins | Back alignment and domain information |
|---|
| >cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins | Back alignment and domain information |
|---|
| >PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed | Back alignment and domain information |
|---|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria | Back alignment and domain information |
|---|
| >PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A | Back alignment and domain information |
|---|
| >PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] | Back alignment and domain information |
|---|
| >PRK14669 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK14670 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit | Back alignment and domain information |
|---|
| >PRK14667 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases | Back alignment and domain information |
|---|
| >TIGR01388 rnd ribonuclease D | Back alignment and domain information |
|---|
| >PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains | Back alignment and domain information |
|---|
| >PRK14671 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
| >PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional | Back alignment and domain information |
|---|
| >TIGR00194 uvrC excinuclease ABC, C subunit | Back alignment and domain information |
|---|
| >PRK14666 uvrC excinuclease ABC subunit C; Provisional | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1428 | ||||
| 1fxx_A | 482 | The Structure Of Exonuclease I Suggests How Process | 2e-88 | ||
| 2haf_A | 211 | Crystal Structure Of A Putative Translation Repress | 2e-37 | ||
| 2aj2_A | 208 | X-Ray Crystal Structure Of Protein Vc0467 From Vibr | 7e-35 | ||
| 1bgx_T | 832 | Taq Polymerase In Complex With Tp7, An Inhibitory F | 1e-33 | ||
| 1taq_A | 832 | Structure Of Taq Dna Polymerase Length = 832 | 2e-33 | ||
| 2do8_A | 188 | Solution Structure Of Upf0301 Protein Hd_1794 Lengt | 3e-32 | ||
| 2gzo_A | 195 | Nmr Structure Of Upf0301 Protein So3346 From Shewan | 5e-30 | ||
| 2ew0_A | 192 | X-Ray Crystal Structure Of Protein Q6ff54 From Acin | 1e-26 | ||
| 1p6g_F | 135 | Real Space Refined Coordinates Of The 30s Subunit F | 4e-18 | ||
| 3sfs_F | 131 | Crystal Structure Of Release Factor Rf3 Trapped In | 4e-18 | ||
| 3fih_F | 100 | Ternary Complex-Bound E.Coli 70s Ribosome. This Ent | 7e-18 | ||
| 2gy9_F | 95 | Structure Of The 30s Subunit Of A Pre-Translocation | 1e-16 | ||
| 1p85_F | 149 | Real Space Refined Coordinates Of The 50s Subunit F | 2e-13 | ||
| 1p6g_R | 74 | Real Space Refined Coordinates Of The 30s Subunit F | 5e-13 | ||
| 1vs5_R | 75 | Crystal Structure Of The Bacterial Ribosome From Es | 5e-13 | ||
| 3e1a_K | 75 | Structure Of The 30s Subunit And The Trnas Of E. Co | 2e-12 | ||
| 2gy9_R | 69 | Structure Of The 30s Subunit Of A Pre-Translocation | 5e-12 | ||
| 3iy9_H | 60 | Leishmania Tarentolae Mitochondrial Large Ribosomal | 3e-10 | ||
| 2gm2_A | 132 | Nmr Structure Of Xanthomonas Campestris Xcc1710: No | 5e-08 | ||
| 1nkw_F | 146 | Crystal Structure Of The Large Ribosomal Subunit Fr | 2e-07 | ||
| 2k2e_A | 158 | Solution Nmr Structure Of Bordetella Pertussis Prot | 3e-07 | ||
| 3bbo_J | 197 | Homology Model For The Spinach Chloroplast 50s Subu | 4e-07 | ||
| 3cpk_A | 150 | Crystal Structure Of The Q7w7n7_borpa Protein From | 3e-06 | ||
| 3fih_R | 55 | Ternary Complex-Bound E.Coli 70s Ribosome. This Ent | 3e-06 | ||
| 1vsa_G | 148 | Crystal Structure Of A 70s Ribosome-Trna Complex Re | 3e-06 | ||
| 2v47_I | 148 | Structure Of The Ribosome Recycling Factor Bound To | 3e-06 | ||
| 3tve_K | 146 | Crystal Structure Analysis Of Ribosomal Decoding. T | 3e-06 | ||
| 3uxq_I | 148 | The Structure Of Thermorubin In Complex With The 70 | 3e-06 | ||
| 3pyo_H | 145 | Crystal Structure Of A Complex Containing Domain 3 | 3e-06 | ||
| 3fin_I | 146 | T. Thermophilus 70s Ribosome In Complex With Mrna, | 3e-06 | ||
| 2hgj_K | 148 | Crystal Structure Of The 70s Thermus Thermophilus R | 3e-06 | ||
| 487d_K | 149 | Seven Ribosomal Proteins Fitted To A Cryo-Electron | 6e-06 | ||
| 1pnu_F | 52 | Crystal Structure Of A Streptomycin Dependent Ribos | 7e-06 | ||
| 1ut5_A | 291 | Divalent Metal Ions (Manganese) Bound To T5 5'-Exon | 6e-05 | ||
| 1xo1_A | 291 | T5 5'-Exonuclease Mutant K83a Length = 291 | 2e-04 | ||
| 2hba_A | 52 | Crystal Structure Of N-terminal Domain Of Ribosomal | 3e-04 |
| >pdb|1FXX|A Chain A, The Structure Of Exonuclease I Suggests How Processivity Is Achieved Length = 482 | Back alignment and structure |
|
| >pdb|2HAF|A Chain A, Crystal Structure Of A Putative Translation Repressor From Vibrio Cholerae Length = 211 | Back alignment and structure |
| >pdb|2AJ2|A Chain A, X-Ray Crystal Structure Of Protein Vc0467 From Vibrio Cholerae. Northeast Structural Genomics Consortium Target Vcr8 Length = 208 | Back alignment and structure |
| >pdb|1BGX|T Chain T, Taq Polymerase In Complex With Tp7, An Inhibitory Fab Length = 832 | Back alignment and structure |
| >pdb|1TAQ|A Chain A, Structure Of Taq Dna Polymerase Length = 832 | Back alignment and structure |
| >pdb|2DO8|A Chain A, Solution Structure Of Upf0301 Protein Hd_1794 Length = 188 | Back alignment and structure |
| >pdb|2GZO|A Chain A, Nmr Structure Of Upf0301 Protein So3346 From Shewanella Oneidensis: Northeast Structural Genomics Consortium Target Sor39 Length = 195 | Back alignment and structure |
| >pdb|2EW0|A Chain A, X-Ray Crystal Structure Of Protein Q6ff54 From Acinetobacter Sp. Adp1. Northeast Structural Genomics Consortium Target Asr1 Length = 192 | Back alignment and structure |
| >pdb|1P6G|F Chain F, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 135 | Back alignment and structure |
| >pdb|3SFS|F Chain F, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 131 | Back alignment and structure |
| >pdb|3FIH|F Chain F, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 100 | Back alignment and structure |
| >pdb|2GY9|F Chain F, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 95 | Back alignment and structure |
| >pdb|1P85|F Chain F, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 149 | Back alignment and structure |
| >pdb|1P6G|R Chain R, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 74 | Back alignment and structure |
| >pdb|1VS5|R Chain R, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 75 | Back alignment and structure |
| >pdb|3E1A|K Chain K, Structure Of The 30s Subunit And The Trnas Of E. Coli Ribosome In Pre- Accommodation State Length = 75 | Back alignment and structure |
| >pdb|2GY9|R Chain R, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 69 | Back alignment and structure |
| >pdb|3IY9|H Chain H, Leishmania Tarentolae Mitochondrial Large Ribosomal Subunit Model Length = 60 | Back alignment and structure |
| >pdb|2GM2|A Chain A, Nmr Structure Of Xanthomonas Campestris Xcc1710: Northeast Structural Genomics Consortium Target Xcr35 Length = 132 | Back alignment and structure |
| >pdb|1NKW|F Chain F, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 146 | Back alignment and structure |
| >pdb|2K2E|A Chain A, Solution Nmr Structure Of Bordetella Pertussis Protein Bp2786, A Mth938-Like Domain. Northeast Structural Genomics Consortium Target Ber31 Length = 158 | Back alignment and structure |
| >pdb|3BBO|J Chain J, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 197 | Back alignment and structure |
| >pdb|3CPK|A Chain A, Crystal Structure Of The Q7w7n7_borpa Protein From Bordetella Parapertussis. Northeast Structural Genomics Consortium Target Ber31 Length = 150 | Back alignment and structure |
| >pdb|3FIH|R Chain R, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 55 | Back alignment and structure |
| >pdb|1VSA|G Chain G, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 148 | Back alignment and structure |
| >pdb|2V47|I Chain I, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. Length = 148 | Back alignment and structure |
| >pdb|3TVE|K Chain K, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 146 | Back alignment and structure |
| >pdb|3UXQ|I Chain I, The Structure Of Thermorubin In Complex With The 70s Ribosome From Thermus Thermophilus. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes. Length = 148 | Back alignment and structure |
| >pdb|3PYO|H Chain H, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 145 | Back alignment and structure |
| >pdb|3FIN|I Chain I, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit Length = 146 | Back alignment and structure |
| >pdb|2HGJ|K Chain K, Crystal Structure Of The 70s Thermus Thermophilus Ribosome Showing How The 16s 3'-End Mimicks Mrna E And P Codons. This Entry 2hgj Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 2hgi. Length = 148 | Back alignment and structure |
| >pdb|487D|K Chain K, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 149 | Back alignment and structure |
| >pdb|1PNU|F Chain F, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 52 | Back alignment and structure |
| >pdb|1UT5|A Chain A, Divalent Metal Ions (Manganese) Bound To T5 5'-Exonuclease Length = 291 | Back alignment and structure |
| >pdb|1XO1|A Chain A, T5 5'-Exonuclease Mutant K83a Length = 291 | Back alignment and structure |
| >pdb|2HBA|A Chain A, Crystal Structure Of N-terminal Domain Of Ribosomal Protein L9 (ntl9) K12m Length = 52 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Length = 832 | Back alignment and structure |
|---|
Score = 347 bits (893), Expect = e-103
Identities = 90/268 (33%), Positives = 140/268 (52%), Gaps = 9/268 (3%)
Query: 779 IDGSSCIYRAFYALPDIRNIDNFPVGALYGTIKMLRKLYKNYRATYIACIFDAKGKNFRN 838
+DG YR F+AL + PV A+YG K L K K + +FDAK +FR+
Sbjct: 17 VDGHHLAYRTFHALKGLTTSRGEPVQAVYGFAKSLLKALK-EDGDAVIVVFDAKAPSFRH 75
Query: 839 ILYPSYKATRKKMPYNLILQINLIHQMVKAIGWPILIIKGVEADDVIGTLAKQAVTKHNL 898
Y YKA R P + Q+ LI ++V +G L + G EADDV+ +LAK+A K
Sbjct: 76 EAYGGYKAGRAPTPEDFPRQLALIKELVDLLGLARLEVPGYEADDVLASLAKKA-EKEGY 134
Query: 899 KVIISTNDKDMAQLVSNKIALIN-NNKIHDRTTIISRFGVSPEKIVDYFSLIGDMSDNLP 957
+V I T DKD+ QL+S++I +++ + + ++G+ P++ DY +L GD SDNLP
Sbjct: 135 EVRILTADKDLYQLLSDRIHVLHPEGYLITPAWLWEKYGLRPDQWADYRALTGDESDNLP 194
Query: 958 GVKKIGPKTAVKLLNQYNSLENIINNANNIKGVIGKNLRFALNWLPKLKKILTIKTDCDL 1017
GVK IG KTA KLL ++ SLE ++ N + +K I + + ++ L + ++TD L
Sbjct: 195 GVKGIGEKTARKLLEEWGSLEALLKNLDRLKPAIREKILAHMDDLKLSWDLAKVRTDLPL 254
Query: 1018 TKNIVSIPESLILQPKDEKLLMQLFNKY 1045
+ + D + L +
Sbjct: 255 E------VDFAKRREPDRERLRAFLERL 276
|
| >2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* Length = 482 | Back alignment and structure |
|---|
| >1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A Length = 290 | Back alignment and structure |
|---|
| >2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1 Length = 188 | Back alignment and structure |
|---|
| >2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography, structural genomics, PSI, protein structure initiative; 2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A Length = 211 | Back alignment and structure |
|---|
| >2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1 Length = 192 | Back alignment and structure |
|---|
| >2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1 Length = 195 | Back alignment and structure |
|---|
| >3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ... Length = 149 | Back alignment and structure |
|---|
| >2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria, structural genomics, PSI; 1.50A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1 PDB: 2hrx_A Length = 198 | Back alignment and structure |
|---|
| >1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K Length = 149 | Back alignment and structure |
|---|
| >3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ... Length = 148 | Back alignment and structure |
|---|
| >3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 197 | Back alignment and structure |
|---|
| >1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I Length = 146 | Back alignment and structure |
|---|
| >3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ... Length = 135 | Back alignment and structure |
|---|
| >1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1 Length = 140 | Back alignment and structure |
|---|
| >2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1 Length = 110 | Back alignment and structure |
|---|
| >3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A Length = 305 | Back alignment and structure |
|---|
| >1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ... Length = 101 | Back alignment and structure |
|---|
| >2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV} Length = 132 | Back alignment and structure |
|---|
| >3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis} Length = 99 | Back alignment and structure |
|---|
| >2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1 Length = 128 | Back alignment and structure |
|---|
| >2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ... Length = 88 | Back alignment and structure |
|---|
| >3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R 2avy_R 2i2u_R ... Length = 75 | Back alignment and structure |
|---|
| >3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 168 | Back alignment and structure |
|---|
| >3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A Length = 150 | Back alignment and structure |
|---|
| >2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1 Length = 135 | Back alignment and structure |
|---|
| >2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A Length = 52 | Back alignment and structure |
|---|
| >3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 103 | Back alignment and structure |
|---|
| >2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A Length = 122 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} Length = 194 | Back alignment and structure |
|---|
| >2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A Length = 180 | Back alignment and structure |
|---|
| >3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} Length = 186 | Back alignment and structure |
|---|
| >1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1 Length = 113 | Back alignment and structure |
|---|
| >3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Length = 314 | Back alignment and structure |
|---|
| >3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Length = 242 | Back alignment and structure |
|---|
| >3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* Length = 341 | Back alignment and structure |
|---|
| >1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 Length = 379 | Back alignment and structure |
|---|
| >1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A Length = 336 | Back alignment and structure |
|---|
| >1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Length = 238 | Back alignment and structure |
|---|
| >2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus} Length = 96 | Back alignment and structure |
|---|
| >2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} Length = 346 | Back alignment and structure |
|---|
| >1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A Length = 138 | Back alignment and structure |
|---|
| >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A Length = 326 | Back alignment and structure |
|---|
| >3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} Length = 363 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1428 | |||
| 2qxf_A | 482 | Exodeoxyribonuclease I; alpha-beta domain, DNAQ su | 100.0 | |
| 1exn_A | 290 | 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Ent | 100.0 | |
| 1bgx_T | 832 | TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi | 100.0 | |
| 2ew0_A | 192 | Hypothetical protein aciad0353; Q5FF54, ASR1, NESG | 100.0 | |
| 2haf_A | 211 | Putative translation repressor; alpha/beta, X-RAY | 100.0 | |
| 2gzo_A | 195 | UPF0301 protein SO3346; GFT-protein structure, nes | 100.0 | |
| 3h7i_A | 305 | Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonu | 100.0 | |
| 2do8_A | 188 | UPF0301 protein HD_1794; NESG, GFT structral genom | 100.0 | |
| 2izo_A | 346 | FEN1, flap structure-specific endonuclease; hydrol | 100.0 | |
| 3q8k_A | 341 | Flap endonuclease 1; helix-3 turn-helix, hydrophob | 100.0 | |
| 2gs5_A | 198 | Conserved hypothetical protein; corvnebacterium di | 100.0 | |
| 1rxw_A | 336 | Flap structure-specific endonuclease; helical clam | 100.0 | |
| 1a76_A | 326 | Flap endonuclease-1 protein; 5'-3' EXO/endo nuclea | 100.0 | |
| 1ul1_X | 379 | Flap endonuclease-1; protein complex, DNA-binding | 100.0 | |
| 3ory_A | 363 | Flap endonuclease 1; hydrolase; 2.00A {Desulfuroco | 100.0 | |
| 1b43_A | 340 | Protein (FEN-1); nuclease, DNA repair, DNA replica | 100.0 | |
| 3r8s_H | 149 | 50S ribosomal protein L9; protein biosynthesis, RN | 100.0 | |
| 1div_A | 149 | Ribosomal protein L9; rRNA-binding; 2.60A {Geobaci | 100.0 | |
| 1nkw_F | 146 | 50S ribosomal protein L9; ribosome, large subunit, | 100.0 | |
| 3v2d_I | 148 | 50S ribosomal protein L9; ribosome associated inhi | 100.0 | |
| 3bbo_J | 197 | Ribosomal protein L9; large ribosomal subunit, spi | 100.0 | |
| 2gm2_A | 132 | Conserved hypothetical protein; MTH938-like fold, | 100.0 | |
| 3cpk_A | 150 | Uncharacterized protein Q7W7N7_borpa; BPP2477, BER | 100.0 | |
| 2fi9_A | 128 | Outer membrane protein; bartonella hense protein s | 99.97 | |
| 2fvt_A | 135 | Conserved hypothetical protein; MTH938-like fold, | 99.97 | |
| 3qe9_Y | 352 | Exonuclease 1; exonuclease, hydrolase-DNA complex; | 99.96 | |
| 2ab1_A | 122 | Hypothetical protein; HS.95870, DUF498, structural | 99.96 | |
| 2cyj_A | 118 | Hypothetical protein PH1505; conserved hypothetica | 99.94 | |
| 3u3y_B | 314 | Three prime repair exonuclease 1; RNAse H fold, 3' | 99.93 | |
| 3mxm_B | 242 | Three prime repair exonuclease 1; RNAse H-like fol | 99.92 | |
| 1ihn_A | 113 | Hypothetical protein MTH938; methanobacterium ther | 99.91 | |
| 2gui_A | 194 | DNA polymerase III epsilon subunit; DNA polymerase | 99.9 | |
| 1w0h_A | 204 | 3'-5' exonuclease ERI1; nuclease domain, hydrolase | 99.9 | |
| 2p1j_A | 186 | POLIII, DNA polymerase III POLC-type; structural g | 99.9 | |
| 1y97_A | 238 | Three prime repair exonuclease 2; TREX2, hydrolase | 99.89 | |
| 2f96_A | 224 | Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas | 99.89 | |
| 3tr8_A | 186 | Oligoribonuclease; transcription, hydrolase; 2.50A | 99.87 | |
| 3v9w_A | 235 | Ribonuclease T; DEDD nucleases family, EXO-nucleas | 99.87 | |
| 2xri_A | 224 | ERI1 exoribonuclease 3; hydrolase, metal binding; | 99.87 | |
| 2igi_A | 180 | Oligoribonuclease; RNAse, exoribonuclease, exonucl | 99.86 | |
| 1zbh_A | 299 | 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif | 99.85 | |
| 2gbz_A | 194 | Oligoribonuclease; ORN, deddh, structural genomics | 99.85 | |
| 3i1m_R | 75 | 30S ribosomal protein S18; ribosome structure, pro | 99.83 | |
| 1zbu_A | 349 | ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; | 99.83 | |
| 3cg7_A | 308 | CRN-4, cell death-related nuclease 4; hydrolase, a | 99.82 | |
| 2hba_A | 52 | BL17, 50S ribosomal protein L9; NTL9, K12M, RNA bi | 99.82 | |
| 1wlj_A | 189 | Interferon stimulated gene 20KDA; exoribonuclease, | 99.81 | |
| 2vqe_R | 88 | 30S ribosomal protein S18; tRNA-binding, rRNA-bind | 99.81 | |
| 1cqm_A | 101 | Ribosomal protein S6; alzheimer disease, oligomeri | 99.79 | |
| 3r8n_F | 100 | 30S ribosomal protein S6; protein biosynthesis, RN | 99.78 | |
| 3i1m_F | 135 | 30S ribosomal protein S6; ribosome structure, prot | 99.78 | |
| 2j5a_A | 110 | 30S ribosomal protein S6; ribonucleoprotein, RIBO | 99.77 | |
| 1vmb_A | 140 | 30S ribosomal protein S6; TM0603, structural genom | 99.77 | |
| 3r3t_A | 99 | 30S ribosomal protein S6; structural genomics, cen | 99.72 | |
| 3bbn_R | 103 | Ribosomal protein S18; small ribosomal subunit, sp | 99.72 | |
| 3bbn_F | 168 | Ribosomal protein S6; small ribosomal subunit, spi | 99.69 | |
| 3r8n_R | 55 | 30S ribosomal protein S18; protein biosynthesis, R | 99.64 | |
| 3zzp_A | 77 | TS9, ribosomal protein S6; protein folding, RNA-bi | 98.65 | |
| 2kjw_A | 96 | TS9, 30S ribosomal protein S6; S6 permutant, solut | 98.35 | |
| 2kfn_A | 605 | Klenow fragment of DNA polymerase I; complex (poly | 98.27 | |
| 4gmj_B | 285 | CCR4-NOT transcription complex subunit 7; mRNA dec | 98.04 | |
| 1x9m_A | 698 | DNA polymerase; DNA ploymerase, N-2-acetylaminoflu | 98.0 | |
| 2kjw_A | 96 | TS9, 30S ribosomal protein S6; S6 permutant, solut | 97.92 | |
| 4hec_A | 190 | Putative uncharacterized protein; ssgcid, structur | 97.85 | |
| 1qht_A | 775 | Protein (DNA polymerase); archaea, hyperthermostab | 97.25 | |
| 1s5j_A | 847 | DNA polymerase I; replication, disulfide bonds, tr | 97.16 | |
| 1noy_A | 388 | Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas | 97.02 | |
| 2d5r_A | 252 | CCR4-NOT transcription complex subunit 7; poly(A) | 97.0 | |
| 2p51_A | 333 | SPCC18.06C protein; DEDD nuclease fold, hydrolase, | 96.96 | |
| 3iay_A | 919 | DNA polymerase delta catalytic subunit; protein-DN | 96.79 | |
| 1uoc_A | 289 | POP2; hydrolase, DEDD nuclease, mRNA degradation, | 96.79 | |
| 1iv0_A | 98 | Hypothetical protein; rnaseh-like, YQGF, structura | 96.75 | |
| 1nu0_A | 138 | Hypothetical protein YQGF; structural genomics, st | 96.55 | |
| 2gv9_A | 1193 | DNA polymerase; polymerase alpha fold, transferase | 95.85 | |
| 3d45_A | 507 | Poly(A)-specific ribonuclease PARN; CAP analogue, | 95.64 | |
| 4dfk_A | 540 | DNA polymerase I, thermostable; DNA polymerase, tr | 95.34 | |
| 2a1j_A | 63 | DNA repair endonuclease XPF; XPF, xeroderma pigmen | 94.91 | |
| 3k59_A | 786 | POL II, DNA polymerase II; protein-DNA complex, DN | 94.85 | |
| 3qex_A | 903 | DNA polymerase, GP43; difluorotoluene nucleoside; | 94.72 | |
| 1kft_A | 78 | UVRC, excinuclease ABC subunit C; helix-hairpin-he | 93.94 | |
| 1z00_B | 84 | DNA repair endonuclease XPF; helix-hairpin-helix, | 93.77 | |
| 1z00_A | 89 | DNA excision repair protein ERCC-1; helix-hairpin- | 93.51 | |
| 1x2i_A | 75 | HEF helicase/nuclease; alpha helix, helix-hairpin- | 93.37 | |
| 2bgw_A | 219 | XPF endonuclease; hydrolase, structure specific en | 93.34 | |
| 3pv8_A | 592 | DNA polymerase I; DNA polymerase I, protein-DNA co | 92.94 | |
| 3saf_A | 428 | Exosome component 10; exoribonuclease, RNA exosome | 92.58 | |
| 2a1j_B | 91 | DNA excision repair protein ERCC-1; XPF, xeroderma | 92.41 | |
| 1vhx_A | 150 | Putative holliday junction resolvase; structural g | 91.82 | |
| 2nrt_A | 220 | Uvrabc system protein C; UVRC, endonuclease, RNAse | 90.93 | |
| 2e6m_A | 208 | Werner syndrome ATP-dependent helicase homolog; AP | 87.32 | |
| 3c65_A | 226 | Uvrabc system protein C; UVRC, endonuclease, nucle | 86.14 | |
| 1s5l_U | 134 | Photosystem II 12 kDa extrinsic protein; photosynt | 82.11 | |
| 4gfj_A | 685 | Topoisomerase V; helix-hairpin-helix, DNA repair e | 80.7 |
| >2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-96 Score=891.08 Aligned_cols=461 Identities=37% Similarity=0.666 Sum_probs=413.9
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASII 390 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i 390 (1428)
.+|||+|+||||++|..|+|||||+|+++.++++++++++.+|+|..+++|+|+++.|||||++++...|.++.+++.++
T Consensus 9 ~~~vv~DlETTGl~p~~d~IIEIgaV~vd~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl~~f 88 (482)
T 2qxf_A 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI 88 (482)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CCEEEEEEECCCCCCCCCeEEEEEEEEEECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHHHHH
Confidence 58999999999999999999999999999889999988999999999888889999999999999988899889999999
Q ss_pred HHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHh
Q psy2882 391 EKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEH 470 (1428)
Q Consensus 391 ~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~ 470 (1428)
.+++.++++++||||+++||..||+++|+|+++++|..+|++|+++||++++.+.++.++|+++.||.+.++.++++|++
T Consensus 89 ~~~l~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~ 168 (482)
T 2qxf_A 89 HSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH 168 (482)
T ss_dssp HHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHH
T ss_pred HHHHcCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCcccccCcccccCCCCCCHHH
Confidence 99998778999999989999999999999999999999999999999999999999999999999998888899999999
Q ss_pred HHHHcCCCCCCCCChHHHHHHHHHHHHHHHhhCchhHHHHHhhcCHHHHHHHhCCCCCcceEEEeeccCcCCCCceEEEe
Q psy2882 471 LSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550 (1428)
Q Consensus 471 L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~~p~l~~~~~~~~~k~~v~~~~~~~~~~p~~~vs~~~~~~~~~~~~~~p 550 (1428)
|++++|+++.++|+|++||+||++|++.+++++|++|++++..++|..+..++++...+|++|+|++||+.+||+++|+|
T Consensus 169 L~~~~Gi~~~~aHrAL~DA~aTa~l~~~l~~~~p~l~~~~l~~~~k~~~~~l~~~~~~~P~~~~s~~fg~~~g~~~~v~p 248 (482)
T 2qxf_A 169 LTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 (482)
T ss_dssp HHHHTTCCCC---CTTHHHHHHHHHHHHHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEEE
T ss_pred HHHHcCCCCCCCCCHHHHHHHHHHHHHHHHHhChhhhHHHHHhhhHHHHHHHHhhccCCcceEeecccccccCeeeEEee
Confidence 99999999999999999999999999999999999999999999999999999987789999999999999999999999
Q ss_pred eeccCCCCceEEEEeCCCCchhhhcCCHHHHHHHhcccccCCCCC--CCeeEEEecCCccccccccCCChhhhhhhCCCH
Q psy2882 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDL 628 (1428)
Q Consensus 551 ~~~~p~~~n~~i~~dL~~d~~~l~~~~~~~l~~~l~~~~~~~~~~--~plk~i~~Nk~P~~~~p~~~l~~~~~~rl~id~ 628 (1428)
+|+||+|+|++|||||+.||++|+++++++|++||||++++|++. +|||+|||||||+ |+|+++|++++++|||||.
T Consensus 249 l~~~~~n~n~~~~~dl~~d~~~l~~~~~~~l~~~l~~~~~~l~~~~~~p~k~v~~nk~P~-~~~~~~l~~~~~~r~~id~ 327 (482)
T 2qxf_A 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV-LAQANTLRPEDADRLGINR 327 (482)
T ss_dssp EEECSSCTTEEEEEETTSCCHHHHHCC-------------------CCCEEEEETTSCCE-EEEGGGSCHHHHHHHTCCH
T ss_pred eeeCCCCcccEEEEECCCChHHHhcCCHHHHHHHhccchhhhccccCCCeEEEEecCCCe-ecccccCCHHHHHHhCCCH
Confidence 999999999999999999999999999999999999999999876 8999999999999 9999999999999999999
Q ss_pred HHHHHHHHhHHhHhhChHHHHHHHHHhhc-cCCCCCCChhhhhhcCCCChhHHHHHHHHHcCChhcccccCCCCCcccHH
Q psy2882 629 NCAFKNIKCASSILNNTYIWKKIFLDYKI-NNSDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLE 707 (1428)
Q Consensus 629 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~~~~~d~d~~lY~gF~s~~D~~~~~~~~~~~~~~l~~~~~~f~D~Rl~ 707 (1428)
+.|++|+++ |++||++++|+.++|++ ..++++.|||++||+||||++||++|++||+++|++|+++...|+|+||+
T Consensus 328 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~lY~gF~~~~D~~~~~~~~~~~~~~~~~~~~~f~d~rl~ 404 (482)
T 2qxf_A 328 QHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIE 404 (482)
T ss_dssp HHHHHHHHH---HHHCTTHHHHC-------------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHH
T ss_pred HHHHHHHHH---HHhCHHHHHHHHHHHhccccCCCCCChHHHHhCCCCCHHHHHHHHHHHcCCHHHHHhCcCCCcCccHH
Confidence 999999999 99999999999999986 33677899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhcCcc--hHHHHHHHHhhhhhc
Q psy2882 708 ELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH--DTKILNALLMYGKID 780 (1428)
Q Consensus 708 ~l~fr~~arn~p~~L~~~e~~~w~~~~~~rl~~~~~~~~~~~~~~~~i~~L~~~~~~~--~~~lL~~L~~Y~~i~ 780 (1428)
+|+|||||||||+|||++||++|++||++||+.+ |+++|+++|++|+++++.+ |++||++|++|++..
T Consensus 405 ~l~~r~~arn~p~~l~~~e~~~w~~~~~~~l~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~y~~~~ 474 (482)
T 2qxf_A 405 KLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKALWQYADEI 474 (482)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHHHHHHHSCHH-----HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCcccCCHHHHHHHHHHHHHHhhhh-----hHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999872 8999999999999998766 889999999999864
|
| >1exn_A 5'-exonuclease, 5'-nuclease; hydrolase; 2.50A {Enterobacteria phage T5} SCOP: a.60.7.1 c.120.1.2 PDB: 1ut5_A 1ut8_A 1xo1_A | Back alignment and structure |
|---|
| >1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* | Back alignment and structure |
|---|
| >2ew0_A Hypothetical protein aciad0353; Q5FF54, ASR1, NESG, structural genomics, PSI, protein struct initiative; 1.40A {Acinetobacter SP} SCOP: d.310.1.1 | Back alignment and structure |
|---|
| >2haf_A Putative translation repressor; alpha/beta, X-RAY crystallography, structural genomics, PSI, protein structure initiative; 2.88A {Vibrio cholerae} SCOP: d.310.1.1 PDB: 2aj2_A | Back alignment and structure |
|---|
| >2gzo_A UPF0301 protein SO3346; GFT-protein structure, nesgc, alpha-beta, structural genomics, PSI, protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.310.1.1 | Back alignment and structure |
|---|
| >3h7i_A Ribonuclease H, RNAse H; BPT4 RNAse H, 5'-3' exonuclease, hydrolase, endonuclease; 1.50A {Enterobacteria phage T4} PDB: 2ihn_A 3h8w_A 3h8j_A 1tfr_A 3h8s_A | Back alignment and structure |
|---|
| >2do8_A UPF0301 protein HD_1794; NESG, GFT structral genomics, HDR14, structural genomics, PSI, protein structure initiative; NMR {Haemophilus ducreyi} SCOP: d.310.1.1 | Back alignment and structure |
|---|
| >2izo_A FEN1, flap structure-specific endonuclease; hydrolase, DNA repair, DNA-binding, endonuclease, metal-BIND excision repair, DNA replication, PCNA; HET: DNA; 2.9A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3q8k_A Flap endonuclease 1; helix-3 turn-helix, hydrophobic wedge, 3' flap binding site, hydrolase-DNA complex, DNA repair, replication; HET: DNA; 2.20A {Homo sapiens} PDB: 3q8l_A* 3q8m_A* | Back alignment and structure |
|---|
| >2gs5_A Conserved hypothetical protein; corvnebacterium diphtheria, structural genomics, PSI; 1.50A {Corynebacterium diphtheriae nctc 13129ORGANISM_TAXID} SCOP: d.310.1.1 PDB: 2hrx_A | Back alignment and structure |
|---|
| >1rxw_A Flap structure-specific endonuclease; helical clamp, helix-3 turn-helix, hydrophobic wedge, 3' FLA site, hydrolase-DNA complex; 2.00A {Archaeoglobus fulgidus} SCOP: a.60.7.1 c.120.1.2 PDB: 1rxv_A | Back alignment and structure |
|---|
| >1a76_A Flap endonuclease-1 protein; 5'-3' EXO/endo nuclease, DNA replication, RTH, RAD27, DNA repair; 2.00A {Methanocaldococcus jannaschii} SCOP: a.60.7.1 c.120.1.2 PDB: 1a77_A | Back alignment and structure |
|---|
| >1ul1_X Flap endonuclease-1; protein complex, DNA-binding protein, flap DNA, flap endonuclease, sliding clamp, DNA clamp; 2.90A {Homo sapiens} SCOP: a.60.7.1 c.120.1.2 | Back alignment and structure |
|---|
| >3ory_A Flap endonuclease 1; hydrolase; 2.00A {Desulfurococcus amylolyticus} | Back alignment and structure |
|---|
| >1b43_A Protein (FEN-1); nuclease, DNA repair, DNA replication, transferase; 2.00A {Pyrococcus furiosus} SCOP: a.60.7.1 c.120.1.2 PDB: 1mc8_A | Back alignment and structure |
|---|
| >3r8s_H 50S ribosomal protein L9; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_F 1p86_F 1vs8_H 1vs6_H 2aw4_H 2awb_H 2gya_F 2gyc_F 1vt2_H 2i2v_H 2j28_H 2i2t_H* 2qao_H* 2qba_H* 2qbc_H* 2qbe_H 2qbg_H 2qbi_H* 2qbk_H* 2qov_H ... | Back alignment and structure |
|---|
| >1div_A Ribosomal protein L9; rRNA-binding; 2.60A {Geobacillus stearothermophilus} SCOP: d.99.1.1 d.100.1.1 PDB: 1giy_K 1yl3_K 2b66_I 2b9n_I 2b9p_I 487d_K | Back alignment and structure |
|---|
| >1nkw_F 50S ribosomal protein L9; ribosome, large subunit, X- RAY structure, peptidyl-transferase, peptide bond formation; 3.10A {Deinococcus radiodurans} SCOP: i.1.1.2 PDB: 1nwx_F* 1nwy_F* 1sm1_F* 1xbp_F* 1pnu_F 1pny_F 1vor_I 1vou_I 1vow_I 1voy_I 1vp0_I | Back alignment and structure |
|---|
| >3v2d_I 50S ribosomal protein L9; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2j03_I 2jl6_I 2jl8_I 2v47_I 2v49_I 2wdi_I 2wdj_I 2wdl_I 2wdn_I 2wh2_I 2x9s_I 2x9u_I 2xg0_I 2xg2_I 3hux_I 3huz_I 3i8f_K 3i8i_K 3i9c_K 3i9e_K ... | Back alignment and structure |
|---|
| >3bbo_J Ribosomal protein L9; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 | Back alignment and structure |
|---|
| >2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A | Back alignment and structure |
|---|
| >2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1 | Back alignment and structure |
|---|
| >2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1 | Back alignment and structure |
|---|
| >3qe9_Y Exonuclease 1; exonuclease, hydrolase-DNA complex; HET: DNA; 2.51A {Homo sapiens} PDB: 3qeb_Z* 3qea_Z* | Back alignment and structure |
|---|
| >2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A | Back alignment and structure |
|---|
| >2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1 | Back alignment and structure |
|---|
| >3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* | Back alignment and structure |
|---|
| >3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A | Back alignment and structure |
|---|
| >1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1 | Back alignment and structure |
|---|
| >2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* | Back alignment and structure |
|---|
| >1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
| >1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
| >3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A | Back alignment and structure |
|---|
| >2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
| >2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A | Back alignment and structure |
|---|
| >1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
| >3i1m_R 30S ribosomal protein S18; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_R* 1vs5_R 3i1o_R 3i1q_R 3i1s_R 3i1z_R 3i21_R 3izv_V* 3izw_V* 3kc4_R 3or9_R 3ora_R 3sfs_R* 3uoq_R* 4gaq_R* 4gas_R* 2qal_R* 1p6g_R 1p87_R 2aw7_R ... | Back alignment and structure |
|---|
| >1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A | Back alignment and structure |
|---|
| >2hba_A BL17, 50S ribosomal protein L9; NTL9, K12M, RNA binding protein; 1.25A {Geobacillus stearothermophilus} SCOP: d.100.1.1 PDB: 1cqu_A 2hbb_A 2hvf_A | Back alignment and structure |
|---|
| >1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 | Back alignment and structure |
|---|
| >2vqe_R 30S ribosomal protein S18; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.4.8.1 PDB: 1fka_R 1fjg_R 1gix_U* 1hnw_R* 1hnx_R* 1hnz_R* 1hr0_R 1ibk_R* 1ibl_R* 1ibm_R 1j5e_R 1jgo_U* 1jgp_U* 1jgq_U* 1ml5_U* 1n32_R* 1n33_R* 1n34_R 1n36_R 1xmo_R* ... | Back alignment and structure |
|---|
| >1cqm_A Ribosomal protein S6; alzheimer disease, oligomerization; 1.65A {Thermus thermophilus} SCOP: d.58.14.1 PDB: 1cqn_A 1qjh_A 1ris_A 1fka_F 1gix_I* 1hnw_F* 1hnx_F* 1hnz_F* 1hr0_F 1i94_F* 1i95_F* 1i96_F* 1i97_F* 1ibk_F* 1ibl_F* 1ibm_F 1j5e_F 1jgo_I* 1jgp_I* 1jgq_I* ... | Back alignment and structure |
|---|
| >3i1m_F 30S ribosomal protein S6; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1p6g_F 1p87_F* 1vs7_F* 2avy_F 2aw7_F 1vs5_F 2i2u_F 2i2p_F* 2qan_F* 2qb9_F* 2qbb_F* 2qbd_F 2qbf_F 2qbh_F* 2qbj_F* 2qou_F* 2qow_F* 2qoy_F* 2qp0_F* 2vho_F ... | Back alignment and structure |
|---|
| >2j5a_A 30S ribosomal protein S6; ribonucleoprotein, RIBO protein S6, RNA-binding, rRNA-binding, protein folding; 2.3A {Aquifex aeolicus} SCOP: d.58.14.1 | Back alignment and structure |
|---|
| >1vmb_A 30S ribosomal protein S6; TM0603, structural genomics, JCSG, structure initiative, PSI, joint center for structural GENO translation; 1.70A {Thermotoga maritima} SCOP: d.58.14.1 | Back alignment and structure |
|---|
| >3r3t_A 30S ribosomal protein S6; structural genomics, center for structural genomics of infec diseases, csgid, beta-barrel, cytosol; 2.30A {Bacillus anthracis} | Back alignment and structure |
|---|
| >3bbn_R Ribosomal protein S18; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 | Back alignment and structure |
|---|
| >3bbn_F Ribosomal protein S6; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} | Back alignment and structure |
|---|
| >3zzp_A TS9, ribosomal protein S6; protein folding, RNA-binding; 0.96A {Thermus thermophilus} | Back alignment and structure |
|---|
| >2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
| >2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* | Back alignment and structure |
|---|
| >4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* | Back alignment and structure |
|---|
| >2kjw_A TS9, 30S ribosomal protein S6; S6 permutant, solution structure, backbone dynamics, folding, ribonucleoprotein, RNA-binding, rRNA-binding; NMR {Thermus thermophilus} | Back alignment and structure |
|---|
| >4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 | Back alignment and structure |
|---|
| >1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* | Back alignment and structure |
|---|
| >2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9 | Back alignment and structure |
|---|
| >2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A | Back alignment and structure |
|---|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9 | Back alignment and structure |
|---|
| >1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8 | Back alignment and structure |
|---|
| >1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* | Back alignment and structure |
|---|
| >3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
| >4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... | Back alignment and structure |
|---|
| >2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... | Back alignment and structure |
|---|
| >1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 | Back alignment and structure |
|---|
| >1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* | Back alignment and structure |
|---|
| >1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >2bgw_A XPF endonuclease; hydrolase, structure specific endonuclease, nucleotide excision repair; 2.8A {Aeropyrum pernix} SCOP: a.60.2.5 c.52.1.20 PDB: 2bhn_A | Back alignment and structure |
|---|
| >3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... | Back alignment and structure |
|---|
| >3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A | Back alignment and structure |
|---|
| >2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 | Back alignment and structure |
|---|
| >1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8 | Back alignment and structure |
|---|
| >2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A | Back alignment and structure |
|---|
| >2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* | Back alignment and structure |
|---|
| >3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus} | Back alignment and structure |
|---|
| >1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
| >4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1428 | ||||
| d2qxfa1 | 467 | c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli | 2e-67 | |
| d2hafa1 | 178 | d.310.1.1 (A:15-192) Hypothetical protein VC0467 { | 6e-43 | |
| d2do8a1 | 186 | d.310.1.1 (A:1-186) Hypothetical protein HD1794 {H | 8e-43 | |
| d2gzoa1 | 187 | d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Sh | 7e-41 | |
| d2ew0a1 | 175 | d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353 | 1e-36 | |
| d2gs5a1 | 193 | d.310.1.1 (A:1-193) Hypothetical protein DIP2367 { | 3e-32 | |
| d1xo1a2 | 167 | c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacterioph | 2e-25 | |
| d1cmwa2 | 164 | c.120.1.2 (A:10-173) 5' to 3' exonuclease domain o | 7e-24 | |
| d2qalf1 | 100 | d.58.14.1 (F:1-100) Ribosomal protein S6 {Escheric | 5e-23 | |
| d1tfra2 | 169 | c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 | 2e-21 | |
| d2gycf2 | 58 | d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain { | 6e-21 | |
| d1vmba_ | 107 | d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga ma | 8e-21 | |
| d1y97a1 | 228 | c.55.3.5 (A:1-228) Three prime repair exonuclease | 4e-20 | |
| d2j01i2 | 55 | d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain { | 5e-20 | |
| d2fvta1 | 127 | c.103.1.1 (A:1-127) Hypothetical protein RPA2829 { | 1e-19 | |
| d2fi9a1 | 118 | c.103.1.1 (A:11-128) Hypothetical outer membrane p | 4e-19 | |
| d1loua_ | 97 | d.58.14.1 (A:) Ribosomal protein S6 {Thermus therm | 6e-19 | |
| d2hbaa1 | 52 | d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain { | 8e-19 | |
| d2igia1 | 180 | c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia | 2e-18 | |
| d2gycf1 | 91 | d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain | 1e-17 | |
| d3b6oa1 | 226 | c.55.3.5 (A:9-234) Three prime repair exonuclease | 3e-17 | |
| d2j5aa1 | 106 | d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex | 4e-17 | |
| d2cyja1 | 118 | c.103.1.1 (A:1-118) Hypothetical protein PH1505 {P | 4e-15 | |
| d2q4qa1 | 121 | c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C | 8e-15 | |
| d1cmwa1 | 116 | a.60.7.1 (A:174-289) 5' to 3' exonuclease domain o | 2e-13 | |
| d1diva1 | 94 | d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain | 3e-13 | |
| d2uubr1 | 70 | a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus t | 3e-13 | |
| d1ihna_ | 113 | c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) | 7e-13 | |
| d1ul1x1 | 140 | a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nu | 7e-13 | |
| d1xo1a1 | 105 | a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacterioph | 2e-12 | |
| d2j01i1 | 91 | d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain | 9e-12 | |
| d2f96a1 | 202 | c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas ae | 1e-11 | |
| d2qalr1 | 55 | a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherich | 2e-11 | |
| d1rxwa1 | 105 | a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nu | 2e-08 | |
| d1w0ha_ | 200 | c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapien | 6e-07 | |
| d1a77a1 | 108 | a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nu | 9e-07 | |
| d1b43a1 | 120 | a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nu | 0.003 |
| >d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} Length = 467 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease I species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]
Score = 233 bits (595), Expect = 2e-67
Identities = 170/472 (36%), Positives = 258/472 (54%), Gaps = 12/472 (2%)
Query: 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITK 370
STFL++DYETFG + DRP QFAAIRTD N I P + YCKPA D+LP P A LIT
Sbjct: 2 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 61
Query: 371 ITPQFCLNNGIPEYKFASIIEKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREW 430
ITPQ G E FA+ I +F P T +GYN + FDDE+TR +F+RN +PY W
Sbjct: 62 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 121
Query: 431 KNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEHLSFVNNLSHKKAHDALSDVR 490
+++ SRWDL++V++A Y L P GI WP ++G PSF+LEHL+ N + H AHDA++DV
Sbjct: 122 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 181
Query: 491 ATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550
AT+ +A+L++ PRLF+++ + R K ++A I P +P +++ MF + S + P
Sbjct: 182 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 241
Query: 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLC--FKKNSFKEDIPISMIHLNRSPI 608
+ HP N+N +I +L D L D + +R+ L +P+ ++H+N+ P+
Sbjct: 242 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 301
Query: 609 VISNLKVLSSNLMFRYKFDLNCAFKNIKCASSILNNTYIWKKIFLDYKINNSDLELNIDE 668
+ L R + N+K IF + + N+D
Sbjct: 302 LA-QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP--SDNVDA 358
Query: 669 ELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLEELIFLYRARNFIETLSYKELK 728
+LYN F S D + I+ P+ L ++ F +K++E+L+F YRARNF TL Y E +
Sbjct: 359 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 418
Query: 729 RWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEHDTK--ILNALLMYGK 778
RW ++R F + + + E++ L+++ + K +L AL Y
Sbjct: 419 RWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKALWQYAD 465
|
| >d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]} Length = 178 | Back information, alignment and structure |
|---|
| >d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794 {Haemophilus ducreyi [TaxId: 730]} Length = 186 | Back information, alignment and structure |
|---|
| >d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella oneidensis [TaxId: 70863]} Length = 187 | Back information, alignment and structure |
|---|
| >d2ew0a1 d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353 {Acinetobacter sp. ADP1 [TaxId: 62977]} Length = 175 | Back information, alignment and structure |
|---|
| >d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {Corynebacterium diphtheriae [TaxId: 1717]} Length = 193 | Back information, alignment and structure |
|---|
| >d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Length = 167 | Back information, alignment and structure |
|---|
| >d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Length = 164 | Back information, alignment and structure |
|---|
| >d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli [TaxId: 562]} Length = 100 | Back information, alignment and structure |
|---|
| >d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]} Length = 169 | Back information, alignment and structure |
|---|
| >d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]} Length = 58 | Back information, alignment and structure |
|---|
| >d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]} Length = 107 | Back information, alignment and structure |
|---|
| >d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
| >d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]} Length = 55 | Back information, alignment and structure |
|---|
| >d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 127 | Back information, alignment and structure |
|---|
| >d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]} Length = 118 | Back information, alignment and structure |
|---|
| >d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus [TaxId: 274]} Length = 97 | Back information, alignment and structure |
|---|
| >d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 52 | Back information, alignment and structure |
|---|
| >d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} Length = 180 | Back information, alignment and structure |
|---|
| >d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]} Length = 91 | Back information, alignment and structure |
|---|
| >d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 226 | Back information, alignment and structure |
|---|
| >d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus [TaxId: 63363]} Length = 106 | Back information, alignment and structure |
|---|
| >d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118 | Back information, alignment and structure |
|---|
| >d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]} Length = 121 | Back information, alignment and structure |
|---|
| >d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} Length = 116 | Back information, alignment and structure |
|---|
| >d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 94 | Back information, alignment and structure |
|---|
| >d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]} Length = 70 | Back information, alignment and structure |
|---|
| >d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 113 | Back information, alignment and structure |
|---|
| >d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} Length = 140 | Back information, alignment and structure |
|---|
| >d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} Length = 105 | Back information, alignment and structure |
|---|
| >d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]} Length = 91 | Back information, alignment and structure |
|---|
| >d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} Length = 202 | Back information, alignment and structure |
|---|
| >d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]} Length = 55 | Back information, alignment and structure |
|---|
| >d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 105 | Back information, alignment and structure |
|---|
| >d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 200 | Back information, alignment and structure |
|---|
| >d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 108 | Back information, alignment and structure |
|---|
| >d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 120 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1428 | |||
| d2qxfa1 | 467 | Exonuclease I {Escherichia coli K12 (Escherichia c | 100.0 | |
| d2do8a1 | 186 | Hypothetical protein HD1794 {Haemophilus ducreyi [ | 100.0 | |
| d2ew0a1 | 175 | Hypothetical protein ACIAD0353 {Acinetobacter sp. | 100.0 | |
| d2gzoa1 | 187 | Hypotheical protein SO3346 {Shewanella oneidensis | 100.0 | |
| d2hafa1 | 178 | Hypothetical protein VC0467 {Vibrio cholerae [TaxI | 100.0 | |
| d2gs5a1 | 193 | Hypothetical protein DIP2367 {Corynebacterium diph | 100.0 | |
| d1cmwa2 | 164 | 5' to 3' exonuclease domain of DNA polymerase Taq | 100.0 | |
| d2fvta1 | 127 | Hypothetical protein RPA2829 {Rhodopseudomonas pal | 99.97 | |
| d2fi9a1 | 118 | Hypothetical outer membrane protein BH05650 {Barto | 99.97 | |
| d1xo1a2 | 167 | T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] | 99.95 | |
| d1tfra2 | 169 | T4 RNase H {Bacteriophage T4 [TaxId: 10665]} | 99.94 | |
| d2q4qa1 | 121 | Hypothetical protein PTD015 (C11orf67) {Human (Hom | 99.93 | |
| d3b6oa1 | 226 | Three prime repair exonuclease 1, TREX1 {Mouse (Mu | 99.92 | |
| d2cyja1 | 118 | Hypothetical protein PH1505 {Pyrococcus horikoshii | 99.92 | |
| d1y97a1 | 228 | Three prime repair exonuclease 2, TREX2 {Human (Ho | 99.9 | |
| d1cmwa1 | 116 | 5' to 3' exonuclease domain of DNA polymerase Taq | 99.9 | |
| d1ihna_ | 113 | Hypothetical protein MT938 (MTH938) {Archaeon Meth | 99.9 | |
| d2guia1 | 174 | N-terminal exonuclease domain of the epsilon subun | 99.89 | |
| d2gycf2 | 58 | Ribosomal protein L9 N-domain {Escherichia coli [T | 99.83 | |
| d2j01i2 | 55 | Ribosomal protein L9 N-domain {Thermus thermophilu | 99.82 | |
| d2f96a1 | 202 | Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287 | 99.82 | |
| d1w0ha_ | 200 | Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960 | 99.82 | |
| d2hbaa1 | 52 | Ribosomal protein L9 N-domain {Bacillus stearother | 99.81 | |
| d1wlja_ | 173 | Interferon-stimulated gene 20 kDa protein, ISG20 { | 99.8 | |
| d2igia1 | 180 | Oligoribonuclease {Escherichia coli [TaxId: 562]} | 99.78 | |
| d1xo1a1 | 105 | T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726] | 99.75 | |
| d1loua_ | 97 | Ribosomal protein S6 {Thermus thermophilus [TaxId: | 99.73 | |
| d1rxwa1 | 105 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc | 99.72 | |
| d2qalf1 | 100 | Ribosomal protein S6 {Escherichia coli [TaxId: 562 | 99.71 | |
| d2j5aa1 | 106 | Ribosomal protein S6 {Aquifex aeolicus [TaxId: 633 | 99.7 | |
| d1vmba_ | 107 | Ribosomal protein S6 {Thermotoga maritima [TaxId: | 99.68 | |
| d1diva1 | 94 | Ribosomal protein L9 C-domain {Bacillus stearother | 99.66 | |
| d2gycf1 | 91 | Ribosomal protein L9 C-domain {Escherichia coli [T | 99.64 | |
| d1a77a1 | 108 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met | 99.63 | |
| d2uubr1 | 70 | Ribosomal protein S18 {Thermus thermophilus [TaxId | 99.62 | |
| d1ul1x1 | 140 | Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo | 99.62 | |
| d2j01i1 | 91 | Ribosomal protein L9 C-domain {Thermus thermophilu | 99.59 | |
| d2qalr1 | 55 | Ribosomal protein S18 {Escherichia coli [TaxId: 56 | 99.59 | |
| d1b43a1 | 120 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr | 99.35 | |
| d1b43a2 | 219 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyr | 99.1 | |
| d1a77a2 | 207 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Met | 99.08 | |
| d1ul1x2 | 216 | Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo | 98.99 | |
| d1rxwa2 | 217 | Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Arc | 98.99 | |
| d1x9ma1 | 204 | Exonuclease domain of T7 DNA polymerase {Bacteriop | 98.12 | |
| d2d5ra1 | 252 | CCR4-NOT transcription complex subunit 7, CAF1 {Hu | 97.84 | |
| d1kfsa1 | 195 | Exonuclease domain of prokaryotic DNA polymerase { | 97.59 | |
| d1uoca_ | 286 | Pop2 RNase D domain {Baker's yeast (Saccharomyces | 97.28 | |
| d1iv0a_ | 98 | Hypothetical protein, YqgF homologue {Thermus ther | 96.96 | |
| d1tgoa1 | 347 | Exonuclease domain of family B DNA polymerases {Ar | 96.76 | |
| d1yt3a3 | 193 | Ribonuclease D, catalytic domain {Escherichia coli | 96.6 | |
| d1kfta_ | 56 | Excinuclease UvrC C-terminal domain {Escherichia c | 96.37 | |
| d2hhva1 | 171 | Exonuclease domain of prokaryotic DNA polymerase { | 96.18 | |
| d1x2ia1 | 68 | ATP-dependent RNA helicase PF2015 {Pyrococcus furi | 96.12 | |
| d1s5ja1 | 410 | Exonuclease domain of family B DNA polymerases {Su | 95.78 | |
| d2bgwa1 | 70 | DNA repair endonuclease XPF {Aeropyrum pernix [Tax | 95.72 | |
| d1nu0a_ | 138 | Hypothetical protein YqgF (RuvX) {Escherichia coli | 95.69 | |
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 95.52 | |
| d1vhxa_ | 140 | Hypothetical protein YrrK (RuvX) {Bacillus subtili | 94.76 | |
| d2a1ja1 | 62 | DNA repair endonuclease XPF {Human (Homo sapiens) | 94.75 | |
| d2a1jb1 | 78 | DNA excision repair protein ERCC-1 {Human (Homo sa | 94.16 | |
| d1tfra1 | 123 | T4 RNase H {Bacteriophage T4 [TaxId: 10665]} | 94.06 | |
| d2hbka2 | 292 | Exosome complex exonuclease RRP6 {Baker's yeast (S | 93.65 | |
| d2i1qa1 | 60 | DNA repair protein Rad51, N-terminal domain {Archa | 93.34 | |
| d1pzna1 | 61 | DNA repair protein Rad51, N-terminal domain {Archa | 90.1 | |
| d2fmpa2 | 57 | DNA polymerase beta {Human (Homo sapiens) [TaxId: | 89.38 | |
| d1noya_ | 372 | Exonuclease domain of family B DNA polymerases {Ba | 89.35 | |
| d2bcqa2 | 57 | DNA polymerase lambda {Human (Homo sapiens) [TaxId | 89.13 | |
| d1bvsa2 | 71 | DNA helicase RuvA subunit, middle domain {Mycobact | 89.06 | |
| d1jmsa3 | 60 | Terminal deoxynucleotidyl transferase {Mouse (Mus | 88.06 | |
| d1ixra1 | 73 | DNA helicase RuvA subunit, middle domain {Thermus | 87.77 | |
| d1ih7a1 | 375 | Exonuclease domain of family B DNA polymerases {Ba | 87.47 | |
| d1vk0a_ | 206 | Hypothetical protein AT5G06450 {Thale-cress (Arabi | 87.24 | |
| d1cuka2 | 78 | DNA helicase RuvA subunit, middle domain {Escheric | 84.65 | |
| d1dgsa1 | 181 | NAD+-dependent DNA ligase, domain 3 {Thermus filif | 84.38 |
| >d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Ribonuclease H-like family: DnaQ-like 3'-5' exonuclease domain: Exonuclease I species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]
Probab=100.00 E-value=2.4e-78 Score=738.61 Aligned_cols=460 Identities=37% Similarity=0.668 Sum_probs=413.7
Q ss_pred ceEEEEeeccccCccCCCcceeEEEEEEeCCceeeccceEEEEecCCCCCCChhhHhhcCCCHHHHhcCCCChHHHHHHH
Q psy2882 311 STFLWYDYETFGLNVRRDRPFQFAAIRTDIMLNTIDNPIMLYCKPAPDFLPDPRACLITKITPQFCLNNGIPEYKFASII 390 (1428)
Q Consensus 311 ~~~v~~D~ETTGldp~~DrIiqiaaIr~~~~~~~i~~~~~~~~~p~~~~~p~pea~~itGITpe~~~~~g~~e~e~~~~i 390 (1428)
.||||||+||||++|.+|+|||||||++|.+++++++...++|+|.++++|+|+|+.|||||++++...|.++++++..+
T Consensus 2 ~~fv~~D~ETtG~~~~~d~ii~~~ai~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~~i 81 (467)
T d2qxfa1 2 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARI 81 (467)
T ss_dssp CEEEEEEEEESSSCTTTSCEEEEEEEEECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHHHH
T ss_pred CeEEEEEEECCCcCCCCCcEEEEEEEEECCCCcEEeEEEEEeecCCCCCCCCHHHHHHhCcCHHHHHcCCCCHHHHHHHH
Confidence 58999999999999999999999999999999999994557899999999999999999999999988899999999999
Q ss_pred HHHHcCCCceEEEEcchhhhHHHHHHHHHHccccchhhhhhcCCCCCchhhHHHHHHHhCCCCcCCCCCCCCCCCCChHh
Q psy2882 391 EKIFLKPGTISVGYNTILFDDEITRFMFWRNLINPYEREWKNNCSRWDLINVIKAFYVLSPYGITWPYKNNGKPSFKLEH 470 (1428)
Q Consensus 391 ~~~~~~~~~~~VGyN~i~FD~~flr~~f~Rn~~~~y~~~~~~g~sr~D~ld~~rl~~~l~p~~~~~p~~~~g~~s~kLe~ 470 (1428)
+++|..+++++||||+++||.+||+++||||+++||...|.++|+++|++.++++++.+.|..+.||....|.++|||++
T Consensus 82 ~~~~~~~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~kL~~ 161 (467)
T d2qxfa1 82 HSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH 161 (467)
T ss_dssp HHHHTSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCCCBCTTSSBCCCHHH
T ss_pred HHHHhcCCCcEEEEecchhhHHHHHHHHHHhcccchhhcccccccchhhhhhhhhccccCCchhhhhhccccchhhhHHH
Confidence 99998878899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCCCCCChHHHHHHHHHHHHHHHhhCchhHHHHHhhcCHHHHHHHhCCCCCcceEEEeeccCcCCCCceEEEe
Q psy2882 471 LSFVNNLSHKKAHDALSDVRATLGLARLIRNNNPRLFNFILSLRKKKYVLAEIGWPIARPFFYITHMFSSKHSYISLMWP 550 (1428)
Q Consensus 471 L~~~~gi~~~~AHdAlaDv~AT~~l~~~l~~~~p~l~~~~~~~~~k~~v~~~~~~~~~~p~~~vs~~~~~~~~~~~~~~p 550 (1428)
||.+||+++..||||++||.||++|++++++++|.+|++++..++|..|.+.|......|+++++++||...+++.++++
T Consensus 162 la~~~gi~~~~aH~Al~D~~~t~~l~~~i~~~~~~~~~~~l~~~~K~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (467)
T d2qxfa1 162 LTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 241 (467)
T ss_dssp HHHHTTCCCC---CTTHHHHHHHHHHHHHHHHSHHHHHHHHHTTSHHHHHHTCCTTTTCCEEEECGGGCGGGTTEEEEEE
T ss_pred HHHHhCCCccccccccCCHHHHHHHHHHhhhhhHHHHHHHHHhccHHHHHHHhhhcccceeeEeeccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred eeccCCCCceEEEEeCCCCchhhhcCCHHHHHHHhcccccCCCCC--CCeeEEEecCCccccccccCCChhhhhhhCCCH
Q psy2882 551 ICIHPMNKNILITWNLLHDPKKFLLNDINKIRDYLCFKKNSFKED--IPISMIHLNRSPIVISNLKVLSSNLMFRYKFDL 628 (1428)
Q Consensus 551 ~~~~p~~~n~~i~~dL~~d~~~l~~~~~~~l~~~l~~~~~~~~~~--~plk~i~~Nk~P~~~~p~~~l~~~~~~rl~id~ 628 (1428)
++.||.|+|.++||||+.||+++++++.++|.++++++..++..+ .|+|.|++|+||+ ++|.+.++.+...+++++.
T Consensus 242 ~~~~p~~~n~~i~~dL~~dp~~~l~l~~~el~~~l~~~~~~~~~~~~~~ir~i~~nk~p~-i~~~~~~~~~~~~~l~~~~ 320 (467)
T d2qxfa1 242 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV-LAQANTLRPEDADRLGINR 320 (467)
T ss_dssp EEECSSCTTEEEEEETTSCCHHHHHCC-------------------CCCEEEEETTSCCE-EEEGGGSCHHHHHHHTCCH
T ss_pred cccCCccccceeeeehhhchhhhhhhhHHHHHHHHhcccccccccCCcceEEeeccCCcc-cCchhhccchhHhHhhHHH
Confidence 999999999999999999999999999999999999988777666 7899999999999 9999999999999999999
Q ss_pred HHHHHHHHhHHhHhhChHHHHHHHHHhhccC-CCCCCChhhhhhcCCCChhHHHHHHHHHcCChhcccccCCCCCcccHH
Q psy2882 629 NCAFKNIKCASSILNNTYIWKKIFLDYKINN-SDLELNIDEELYNNFISKKDNLKLAILRSMSPKKLSNVNFCFENKKLE 707 (1428)
Q Consensus 629 ~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~-~~~~~d~d~~lY~gF~s~~D~~~~~~~~~~~~~~l~~~~~~f~D~Rl~ 707 (1428)
+.|++|++. |++|+.+.+++.+++.... +.++.++|++||+||+|++|+.+|++||.++|+++..+...|+|+||+
T Consensus 321 ~~~~~r~~~---i~~n~~~~~~~~~~~~~~~~~~~~~~~e~~iY~gf~s~~Dk~~~~~fh~a~~~~k~~~~~~f~D~Rl~ 397 (467)
T d2qxfa1 321 QHCLDNLKI---LRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIE 397 (467)
T ss_dssp HHHHHHHHH---HHHCTTHHHHC-------------CCGGGCGGGCCCCHHHHHHHHHHHHSCTTTSTTCCCCCCSTHHH
T ss_pred HHHHHHHHH---hhhCHHHHHHhHHHhhhccccccccccHHHHhccccchHHHHHHHHHHhCCHHHHHHHhcCCCChHHH
Confidence 999999999 9999999999999887543 566799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcccCCCccccHHHHHHHHHHHHhhcCcc--hHHHHHHHHhhhhh
Q psy2882 708 ELIFLYRARNFIETLSYKELKRWKKYRISRFYNKKNNLYNINMFYLEIESLLKKANEH--DTKILNALLMYGKI 779 (1428)
Q Consensus 708 ~l~fr~~arn~p~~L~~~e~~~w~~~~~~rl~~~~~~~~~~~~~~~~i~~L~~~~~~~--~~~lL~~L~~Y~~i 779 (1428)
+|++||++||||++|+++|+++|+++|++||.. -|++.|..+|++|+.++..+ |+.||++|..|++.
T Consensus 398 ~l~~R~~~~n~Pe~L~~~~~~~~~~~i~~rl~~-----~ti~~~~~ei~~l~~~~~~~~ek~~iL~~l~~y~~~ 466 (467)
T d2qxfa1 398 KLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTP-----EFLQGYADELQMLVQQYADDKEKVALLKALWQYADE 466 (467)
T ss_dssp HHHHHHHHHHCGGGCCHHHHHHHHHHHHHHSCH-----HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChhcCCHHHHHHHHHHHHHHhcC-----CcHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999976 38999999999999887766 88999999999974
|
| >d2do8a1 d.310.1.1 (A:1-186) Hypothetical protein HD1794 {Haemophilus ducreyi [TaxId: 730]} | Back information, alignment and structure |
|---|
| >d2ew0a1 d.310.1.1 (A:5-179) Hypothetical protein ACIAD0353 {Acinetobacter sp. ADP1 [TaxId: 62977]} | Back information, alignment and structure |
|---|
| >d2gzoa1 d.310.1.1 (A:1-187) Hypotheical protein SO3346 {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
| >d2hafa1 d.310.1.1 (A:15-192) Hypothetical protein VC0467 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
| >d2gs5a1 d.310.1.1 (A:1-193) Hypothetical protein DIP2367 {Corynebacterium diphtheriae [TaxId: 1717]} | Back information, alignment and structure |
|---|
| >d1cmwa2 c.120.1.2 (A:10-173) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
| >d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]} | Back information, alignment and structure |
|---|
| >d1xo1a2 c.120.1.2 (A:19-185) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} | Back information, alignment and structure |
|---|
| >d1tfra2 c.120.1.2 (A:12-180) T4 RNase H {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1cmwa1 a.60.7.1 (A:174-289) 5' to 3' exonuclease domain of DNA polymerase Taq {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
| >d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
| >d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2gycf2 d.100.1.1 (F:1-58) Ribosomal protein L9 N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2j01i2 d.100.1.1 (I:1-55) Ribosomal protein L9 N-domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
| >d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hbaa1 d.100.1.1 (A:1-52) Ribosomal protein L9 N-domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1xo1a1 a.60.7.1 (A:186-290) T5 5'-exonuclease {Bacteriophage T5 [TaxId: 10726]} | Back information, alignment and structure |
|---|
| >d1loua_ d.58.14.1 (A:) Ribosomal protein S6 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1rxwa1 a.60.7.1 (A:220-324) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2qalf1 d.58.14.1 (F:1-100) Ribosomal protein S6 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2j5aa1 d.58.14.1 (A:3-108) Ribosomal protein S6 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
| >d1vmba_ d.58.14.1 (A:) Ribosomal protein S6 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1diva1 d.99.1.1 (A:56-149) Ribosomal protein L9 C-domain {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2gycf1 d.99.1.1 (F:59-149) Ribosomal protein L9 C-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1a77a1 a.60.7.1 (A:209-316) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d2uubr1 a.4.8.1 (R:19-88) Ribosomal protein S18 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ul1x1 a.60.7.1 (X:218-357) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2j01i1 d.99.1.1 (I:56-146) Ribosomal protein L9 C-domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2qalr1 a.4.8.1 (R:19-73) Ribosomal protein S18 {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1b43a1 a.60.7.1 (A:220-339) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1a77a2 c.120.1.2 (A:2-208) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1ul1x2 c.120.1.2 (X:2-217) Flap endonuclease-1 (Fen-1 nuclease) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1rxwa2 c.120.1.2 (A:3-219) Flap endonuclease-1 (Fen-1 nuclease) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
| >d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
| >d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
| >d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
| >d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1vhxa_ c.55.3.8 (A:) Hypothetical protein YrrK (RuvX) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1tfra1 a.60.7.1 (A:183-305) T4 RNase H {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
| >d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
| >d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
| >d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} | Back information, alignment and structure |
|---|