Psyllid ID: psy2899

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14

MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKKYK

cEEEEEEcccEEEEcccEEEEEEEcccccccccccccccEEEEccEEEEEEEccccEEEEEEEEEcEEEEEccEEEEEEccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccc

ccEEEEccccccccccEEEEEEEEEcccEEEEccccccEEEEEccEEEEEEEcccccEEEEEEccEEEEEEccEEEEEEccEEEHHHccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccc

MRIDIVSIEgllfsnkniefivlpgelgdlgvyplhsplitcikpgfIRIKISKKIEEKCIfvsggiidiqpdsVIVLADTAIHGSDLVEKQIEKEKILLENILynkksnidySITKAKLAIIIAQLKTIQYLRFKKYK

MRIDIVSIEgllfsnknIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKtiqylrfkkyk

MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFirikiskkieekciFVSGGIIDIQPDSVIVLADTAIHGSDLVekqiekekillenilYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKKYK

**IDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFK***

MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKE*******************TKAKLAIIIAQLKT**********

MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKKYK

MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKK**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiii

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLRFKKYK

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		139	2.2.26 [Sep-21-2011]
A4GAG8		140	ATP synthase epsilon chai	yes	N/A	0.978	0.971	0.518	6e-36
A6T469		140	ATP synthase epsilon chai	yes	N/A	0.978	0.971	0.518	1e-35
B2JJ94		141	ATP synthase epsilon chai	yes	N/A	0.949	0.936	0.477	2e-31
B2T7J9		141	ATP synthase epsilon chai	yes	N/A	0.949	0.936	0.477	7e-31
Q13SQ3		141	ATP synthase epsilon chai	yes	N/A	0.949	0.936	0.470	9e-31
Q1GXN1		141	ATP synthase epsilon chai	yes	N/A	0.956	0.943	0.447	4e-30
A9BPU8		138	ATP synthase epsilon chai	yes	N/A	0.956	0.963	0.444	1e-29
Q63PI1		141	ATP synthase epsilon chai	yes	N/A	0.942	0.929	0.458	4e-29
A3NF39		141	ATP synthase epsilon chai	yes	N/A	0.942	0.929	0.458	4e-29
Q3JXW0		141	ATP synthase epsilon chai	yes	N/A	0.942	0.929	0.458	4e-29

>sp\|A4GAG8\|ATPE_HERAR ATP synthase epsilon chain OS=Herminiimonas arsenicoxydans GN=atpC PE=3 SV=1	Back alignment and function desciption

 Score =  149 bits (375), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 99/137 (72%), Gaps = 1/137 (0%)

Query: 1   MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
           MR+++VS E  +FS +  EF+ LPGE G+LG+ P H+PLIT I+PG +RIKI+ + E++ 
Sbjct: 5   MRVEVVSAEEEIFSGEA-EFVALPGESGELGILPGHTPLITRIRPGAVRIKIAGQAEDEF 63

Query: 61  IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
           +FV+GGI+++QP  V VLADTAI G+DL E +  + K L E  L NK+S IDY+  +A+L
Sbjct: 64  VFVAGGILEVQPHGVTVLADTAIRGADLDEAKAAEAKRLAEEALVNKESKIDYAQAQAEL 123

Query: 121 AIIIAQLKTIQYLRFKK 137
           A  IAQL  IQ LR K+
Sbjct: 124 ATAIAQLAAIQRLRQKR 140

Produces ATP from ADP in the presence of a proton gradient across the membrane.
Herminiimonas arsenicoxydans (taxid: 204773)

>sp\|A6T469\|ATPE_JANMA ATP synthase epsilon chain OS=Janthinobacterium sp. (strain Marseille) GN=atpC PE=3 SV=1	Back alignment and function description

>sp\|B2JJ94\|ATPE_BURP8 ATP synthase epsilon chain OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=atpC PE=3 SV=1	Back alignment and function description

>sp\|B2T7J9\|ATPE_BURPP ATP synthase epsilon chain OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=atpC PE=3 SV=1	Back alignment and function description

>sp\|Q13SQ3\|ATPE1_BURXL ATP synthase epsilon chain 1 OS=Burkholderia xenovorans (strain LB400) GN=atpC1 PE=3 SV=1	Back alignment and function description

>sp\|Q1GXN1\|ATPE_METFK ATP synthase epsilon chain OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=atpC PE=3 SV=1	Back alignment and function description

>sp\|A9BPU8\|ATPE_DELAS ATP synthase epsilon chain OS=Delftia acidovorans (strain DSM 14801 / SPH-1) GN=atpC PE=3 SV=1	Back alignment and function description

>sp\|Q63PI1\|ATPE_BURPS ATP synthase epsilon chain OS=Burkholderia pseudomallei (strain K96243) GN=atpC PE=3 SV=1	Back alignment and function description

>sp\|A3NF39\|ATPE_BURP6 ATP synthase epsilon chain OS=Burkholderia pseudomallei (strain 668) GN=atpC PE=3 SV=1	Back alignment and function description

>sp\|Q3JXW0\|ATPE_BURP1 ATP synthase epsilon chain OS=Burkholderia pseudomallei (strain 1710b) GN=atpC PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		139
149925409		147	ATP synthase subunit epsilon [Limnobacte	0.956	0.904	0.514	1e-34
134096551		140	F0F1 ATP synthase subunit epsilon [Hermi	0.978	0.971	0.518	4e-34
329911643		140	ATP synthase epsilon chain [Oxalobactera	0.978	0.971	0.503	7e-34
152980662		140	ATP synthase F0F1 subunit epsilon [Janth	0.978	0.971	0.518	9e-34
237749341		140	H+-transporting two-sector ATPase [Oxalo	0.971	0.964	0.507	6e-33
395760426		139	F0F1 ATP synthase subunit epsilon [Janth	0.949	0.949	0.533	9e-33
237747182		140	F0F1-type ATP synthase [Oxalobacter form	0.971	0.964	0.5	1e-32
254467879		139	ATP synthase F1, epsilon subunit [beta p	0.964	0.964	0.481	2e-31
399021085		140	ATP synthase, F1 epsilon subunit [Herbas	0.978	0.971	0.510	9e-30
420256452		141	ATP synthase, F1 epsilon subunit [Burkho	0.949	0.936	0.477	9e-30

>gi\|149925409\|ref\|ZP_01913673.1\| ATP synthase subunit epsilon [Limnobacter sp. MED105] gi\|149825526\|gb\|EDM84734.1\| ATP synthase subunit epsilon [Limnobacter sp. MED105]	Back alignment and taxonomy information

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 69/134 (51%), Positives = 100/134 (74%), Gaps = 1/134 (0%)

Query: 1   MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
           +R+D+VS E  +F  +  EF+ LPGE G+LG+YP H+PLIT IKPG +RIKI+ + EE+ 
Sbjct: 12  IRVDVVSAEESIFEGE-AEFVALPGEQGELGIYPRHTPLITRIKPGTVRIKIAGQAEEEV 70

Query: 61  IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
           +FV+GG++++QP+SV VLADTA+ GSDL E +  + K L E  L N+ ++IDY+  +A+L
Sbjct: 71  VFVNGGVLEVQPNSVTVLADTALRGSDLDEAKATEAKRLAEEALANRSADIDYAQAQAEL 130

Query: 121 AIIIAQLKTIQYLR 134
           A  IAQL+ I+ LR
Sbjct: 131 ASAIAQLQAIKRLR 144

Source: Limnobacter sp. MED105

Species: Limnobacter sp. MED105

Genus: Limnobacter

Family: Burkholderiaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi\|134096551\|ref\|YP_001101626.1\| F0F1 ATP synthase subunit epsilon [Herminiimonas arsenicoxydans] gi\|166222465\|sp\|A4GAG8.1\|ATPE_HERAR RecName: Full=ATP synthase epsilon chain; AltName: Full=ATP synthase F1 sector epsilon subunit; AltName: Full=F-ATPase epsilon subunit gi\|133740454\|emb\|CAL63505.1\| ATP synthase epsilon chain (ATP synthase F1 sector epsilon subunit) [Herminiimonas arsenicoxydans]	Back alignment and taxonomy information

>gi\|329911643\|ref\|ZP_08275583.1\| ATP synthase epsilon chain [Oxalobacteraceae bacterium IMCC9480] gi\|327545823\|gb\|EGF30943.1\| ATP synthase epsilon chain [Oxalobacteraceae bacterium IMCC9480]	Back alignment and taxonomy information

>gi\|152980662\|ref\|YP_001355316.1\| ATP synthase F0F1 subunit epsilon [Janthinobacterium sp. Marseille] gi\|166222466\|sp\|A6T469.1\|ATPE_JANMA RecName: Full=ATP synthase epsilon chain; AltName: Full=ATP synthase F1 sector epsilon subunit; AltName: Full=F-ATPase epsilon subunit gi\|151280739\|gb\|ABR89149.1\| F-type H+-transporting ATPase epsilon chain [Janthinobacterium sp. Marseille]	Back alignment and taxonomy information

>gi\|237749341\|ref\|ZP_04579821.1\| H+-transporting two-sector ATPase [Oxalobacter formigenes OXCC13] gi\|229380703\|gb\|EEO30794.1\| H+-transporting two-sector ATPase [Oxalobacter formigenes OXCC13]	Back alignment and taxonomy information

>gi\|395760426\|ref\|ZP_10441095.1\| F0F1 ATP synthase subunit epsilon [Janthinobacterium lividum PAMC 25724]	Back alignment and taxonomy information

>gi\|237747182\|ref\|ZP_04577662.1\| F0F1-type ATP synthase [Oxalobacter formigenes HOxBLS] gi\|229378533\|gb\|EEO28624.1\| F0F1-type ATP synthase [Oxalobacter formigenes HOxBLS]	Back alignment and taxonomy information

>gi\|254467879\|ref\|ZP_05081285.1\| ATP synthase F1, epsilon subunit [beta proteobacterium KB13] gi\|207086689\|gb\|EDZ63972.1\| ATP synthase F1, epsilon subunit [beta proteobacterium KB13]	Back alignment and taxonomy information

>gi\|399021085\|ref\|ZP_10723204.1\| ATP synthase, F1 epsilon subunit [Herbaspirillum sp. CF444] gi\|398093069\|gb\|EJL83459.1\| ATP synthase, F1 epsilon subunit [Herbaspirillum sp. CF444]	Back alignment and taxonomy information

>gi\|420256452\|ref\|ZP_14759296.1\| ATP synthase, F1 epsilon subunit [Burkholderia sp. BT03] gi\|398043173\|gb\|EJL36102.1\| ATP synthase, F1 epsilon subunit [Burkholderia sp. BT03]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		139
TIGR_CMR\|CBU_1946		142	CBU_1946 "ATP synthase F1, eps	0.949	0.929	0.365	2.8e-18
UNIPROTKB\|P0A6E6		139	atpC [Escherichia coli K-12 (t	0.913	0.913	0.379	1.6e-17
UNIPROTKB\|Q9KNH6		140	atpC "ATP synthase epsilon cha	0.956	0.95	0.340	6e-16
TIGR_CMR\|VC_2763		140	VC_2763 "ATP synthase F1, epsi	0.956	0.95	0.340	6e-16
TIGR_CMR\|CPS_0063		140	CPS_0063 "ATP synthase F1, eps	0.928	0.921	0.320	8.8e-15
TIGR_CMR\|SO_4746		142	SO_4746 "ATP synthase F1, epsi	0.949	0.929	0.268	8.2e-12
TIGR_CMR\|DET_0565		140	DET_0565 "ATP synthase F1, eps	0.611	0.607	0.329	6.6e-10
TIGR_CMR\|CHY_2544		134	CHY_2544 "ATP synthase F1, eps	0.841	0.873	0.245	4.7e-09
TIGR_CMR\|SPO_3161		136	SPO_3161 "ATP synthase F1, eps	0.575	0.588	0.361	1.3e-06
TIGR_CMR\|BA_5546		133	BA_5546 "ATP synthase F1, epsi	0.827	0.864	0.225	1.6e-06

TIGR_CMR\|CBU_1946 CBU_1946 "ATP synthase F1, epsilon subunit" [Coxiella burnetii RSA 493 (taxid:227377)]	Back alignment and assigned GO terms

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 49/134 (36%), Positives = 74/134 (55%)

Query:     1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFXXXXXXXXXXXXX 60
             M+++IVS E  +FS K +E IV+ G +G+LG+YP H  L+T +KPG              
Sbjct:     5 MQLEIVSAEAAIFSGK-VEMIVVTGGMGELGIYPGHRQLLTSLKPG-QIKAILEGGKEEV 62

Query:    61 XFVSGGIIDIQPDSVIVLADTAIHGSDLVXXXXXXXXXXXXXXXYNKKSNIDYSITKAKL 120
              ++SGG++++QP+ V +LADTA+   DL                  +K+ I+YS    +L
Sbjct:    63 FYMSGGMLEVQPEIVTILADTALRAVDLDEAAAISAKEEAERRLAKQKAGIEYSKAMTEL 122

Query:   121 AIIIAQLKTIQYLR 134
             A   AQL+ IQ LR
Sbjct:   123 AEAAAQLRAIQMLR 136

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045262 "plasma membrane proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

UNIPROTKB\|P0A6E6 atpC [Escherichia coli K-12 (taxid:83333)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9KNH6 atpC "ATP synthase epsilon chain" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]	Back alignment and assigned GO terms

TIGR_CMR\|VC_2763 VC_2763 "ATP synthase F1, epsilon subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)]	Back alignment and assigned GO terms

TIGR_CMR\|CPS_0063 CPS_0063 "ATP synthase F1, epsilon subunit" [Colwellia psychrerythraea 34H (taxid:167879)]	Back alignment and assigned GO terms

TIGR_CMR\|SO_4746 SO_4746 "ATP synthase F1, epsilon subunit" [Shewanella oneidensis MR-1 (taxid:211586)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0565 DET_0565 "ATP synthase F1, epsilon subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

TIGR_CMR\|CHY_2544 CHY_2544 "ATP synthase F1, epsilon subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]	Back alignment and assigned GO terms

TIGR_CMR\|SPO_3161 SPO_3161 "ATP synthase F1, epsilon subunit" [Ruegeria pomeroyi DSS-3 (taxid:246200)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_5546 BA_5546 "ATP synthase F1, epsilon subunit" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B1LL58	ATPE_ECOSM	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
A1V8T0	ATPE_BURMS	No assigned EC number	0.4586	0.9424	0.9290	yes	N/A
Q13SQ3	ATPE1_BURXL	No assigned EC number	0.4701	0.9496	0.9361	yes	N/A
A1K1S3	ATPE_AZOSB	No assigned EC number	0.4666	0.8561	0.8439	yes	N/A
Q2STF0	ATPE_BURTA	No assigned EC number	0.4511	0.9424	0.9290	yes	N/A
A2S6J7	ATPE_BURM9	No assigned EC number	0.4586	0.9424	0.9290	yes	N/A
A3NF39	ATPE_BURP6	No assigned EC number	0.4586	0.9424	0.9290	yes	N/A
A2SC71	ATPE_METPP	No assigned EC number	0.4552	0.9568	0.9637	yes	N/A
B2JJ94	ATPE_BURP8	No assigned EC number	0.4776	0.9496	0.9361	yes	N/A
B6I3W8	ATPE_ECOSE	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
B9MBA4	ATPE_ACIET	No assigned EC number	0.4518	0.9568	0.9637	yes	N/A
Q63PI1	ATPE_BURPS	No assigned EC number	0.4586	0.9424	0.9290	yes	N/A
Q39KX5	ATPE_BURS3	No assigned EC number	0.4436	0.9424	0.9290	yes	N/A
Q0AJA9	ATPE_NITEC	No assigned EC number	0.4264	0.9640	0.9571	yes	N/A
A9AJG5	ATPE_BURM1	No assigned EC number	0.4436	0.9424	0.9290	yes	N/A
Q0A4M9	ATPE_ALHEH	No assigned EC number	0.4028	0.9856	0.9785	yes	N/A
Q820S4	ATPE_NITEU	No assigned EC number	0.4191	0.9640	0.9571	yes	N/A
Q1GXN1	ATPE_METFK	No assigned EC number	0.4477	0.9568	0.9432	yes	N/A
B7LK76	ATPE_ESCF3	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
P0A6E8	ATPE_SHIFL	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
Q62FR4	ATPE_BURMA	No assigned EC number	0.4586	0.9424	0.9290	yes	N/A
C6DJH3	ATPE_PECCP	No assigned EC number	0.4135	0.9424	0.9424	yes	N/A
Q3JXW0	ATPE_BURP1	No assigned EC number	0.4586	0.9424	0.9290	yes	N/A
Q0SYU5	ATPE_SHIF8	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
A9BPU8	ATPE_DELAS	No assigned EC number	0.4444	0.9568	0.9637	yes	N/A
Q2YCA2	ATPE_NITMU	No assigned EC number	0.4485	0.9640	0.9640	yes	N/A
Q1R4K3	ATPE_ECOUT	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
B7NF47	ATPE_ECOLU	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
Q5P4E1	ATPE_AROAE	No assigned EC number	0.4779	0.9712	0.9574	yes	N/A
Q477Z0	ATPE_DECAR	No assigned EC number	0.4580	0.9352	0.9219	yes	N/A
A1VIV3	ATPE_POLNA	No assigned EC number	0.4379	0.9712	0.9782	yes	N/A
Q0BJL4	ATPE_BURCM	No assigned EC number	0.4436	0.9424	0.9290	yes	N/A
Q8XU77	ATPE1_RALSO	No assigned EC number	0.4452	0.9640	0.9781	yes	N/A
Q3SI38	ATPE1_THIDA	No assigned EC number	0.3768	0.9856	0.9716	yes	N/A
A3P0Y9	ATPE_BURP0	No assigned EC number	0.4586	0.9424	0.9290	yes	N/A
B1YQL5	ATPE_BURA4	No assigned EC number	0.4436	0.9424	0.9290	yes	N/A
Q223D7	ATPE_RHOFD	No assigned EC number	0.4222	0.9568	0.9637	yes	N/A
A6T469	ATPE_JANMA	No assigned EC number	0.5182	0.9784	0.9714	yes	N/A
A1WF59	ATPE_VEREI	No assigned EC number	0.4233	0.9712	0.9782	yes	N/A
A4GAG8	ATPE_HERAR	No assigned EC number	0.5182	0.9784	0.9714	yes	N/A
Q12GP9	ATPE_POLSJ	No assigned EC number	0.4306	0.9712	0.9782	yes	N/A
B2T7J9	ATPE_BURPP	No assigned EC number	0.4776	0.9496	0.9361	yes	N/A
A1W2T8	ATPE_ACISJ	No assigned EC number	0.4518	0.9568	0.9637	yes	N/A
Q329S0	ATPE_SHIDS	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
Q7P094	ATPE_CHRVO	No assigned EC number	0.4275	0.9856	0.9785	yes	N/A
Q3YVN5	ATPE_SHISS	No assigned EC number	0.4384	0.9208	0.9208	yes	N/A
B4EEZ0	ATPE_BURCJ	No assigned EC number	0.4436	0.9424	0.9290	yes	N/A
A3MQK0	ATPE_BURM7	No assigned EC number	0.4586	0.9424	0.9290	yes	N/A
Q1BRB1	ATPE1_BURCA	No assigned EC number	0.4436	0.9424	0.9290	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		139
PRK00571		135	PRK00571, atpC, F0F1 ATP synthase subunit epsilon;	8e-41
COG0355		135	COG0355, AtpC, F0F1-type ATP synthase, epsilon sub	8e-32
TIGR01216		130	TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon	2e-30
cd12152		123	cd12152, F1-ATPase_delta, mitochondrial ATP syntha	3e-30
pfam02823		80	pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsi	3e-25
PRK13446		136	PRK13446, atpC, F0F1 ATP synthase subunit epsilon;	1e-17
PRK14735		139	PRK14735, atpC, F0F1 ATP synthase subunit epsilon;	5e-14
PRK14736		133	PRK14736, atpC, F0F1 ATP synthase subunit epsilon;	3e-13
PRK13449		88	PRK13449, atpC, F0F1 ATP synthase subunit epsilon;	1e-11
PRK13443		136	PRK13443, atpC, F0F1 ATP synthase subunit epsilon;	3e-11
PRK13448		135	PRK13448, atpC, F0F1 ATP synthase subunit epsilon;	4e-10
PRK13452		145	PRK13452, atpC, F0F1 ATP synthase subunit epsilon;	3e-09
PRK13444		127	PRK13444, atpC, F0F1 ATP synthase subunit epsilon;	2e-07
PRK13450		132	PRK13450, atpC, F0F1 ATP synthase subunit epsilon;	2e-07
PRK01474		112	PRK01474, atpC, F0F1 ATP synthase subunit epsilon;	3e-07
PRK13442		89	PRK13442, atpC, F0F1 ATP synthase subunit epsilon;	2e-06
CHL00063		134	CHL00063, atpE, ATP synthase CF1 epsilon subunit	3e-05

>gnl\|CDD\|234796 PRK00571, atpC, F0F1 ATP synthase subunit epsilon; Validated	Back alignment and domain information

 Score =  132 bits (334), Expect = 8e-41
 Identities = 60/134 (44%), Positives = 88/134 (65%), Gaps = 2/134 (1%)

Query: 1   MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
           + +DIVS EGL++S   +E +V+PG  G+LG+ P H+PL+T +KPG +RIK     EE+ 
Sbjct: 4   LTVDIVSPEGLIYSG-EVEEVVVPGTEGELGILPGHAPLLTALKPGVVRIKKDDG-EEEV 61

Query: 61  IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
           I VSGG +++QPD V VLAD+A    D+ E + E+ K   E  L NK  ++DY+  +A L
Sbjct: 62  IAVSGGFLEVQPDKVTVLADSAERADDIDEARAEEAKERAEEALENKHDDVDYARAQAAL 121

Query: 121 AIIIAQLKTIQYLR 134
           A  IA+L+  + LR
Sbjct: 122 ARAIARLRVAEKLR 135

Length = 135

>gnl\|CDD\|223432 COG0355, AtpC, F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]	Back alignment and domain information

>gnl\|CDD\|130283 TIGR01216, ATP_synt_epsi, ATP synthase, F1 epsilon subunit (delta in mitochondria)	Back alignment and domain information

>gnl\|CDD\|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit	Back alignment and domain information

>gnl\|CDD\|217242 pfam02823, ATP-synt_DE_N, ATP synthase, Delta/Epsilon chain, beta-sandwich domain	Back alignment and domain information

>gnl\|CDD\|184056 PRK13446, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|173197 PRK14735, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|173198 PRK14736, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|184058 PRK13449, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|237388 PRK13443, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|139579 PRK13448, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|106409 PRK13452, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|139576 PRK13444, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|184059 PRK13450, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|100879 PRK01474, atpC, F0F1 ATP synthase subunit epsilon; Validated	Back alignment and domain information

>gnl\|CDD\|184055 PRK13442, atpC, F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>gnl\|CDD\|214351 CHL00063, atpE, ATP synthase CF1 epsilon subunit	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		139
PRK00539		133	atpC F0F1 ATP synthase subunit epsilon; Validated	100.0
CHL00063		134	atpE ATP synthase CF1 epsilon subunit	100.0
PRK13450		132	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK14735		139	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK00571		135	atpC F0F1 ATP synthase subunit epsilon; Validated	100.0
PRK13452		145	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13446		136	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
TIGR01216		130	ATP_synt_epsi ATP synthase, F1 epsilon subunit (de	100.0
COG0355		135	AtpC F0F1-type ATP synthase, epsilon subunit (mito	100.0
PRK13444		127	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13448		135	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK14736		133	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13443		136	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK13451		101	atpC F0F1 ATP synthase subunit epsilon; Provisiona	100.0
PRK01474		112	atpC F0F1 ATP synthase subunit epsilon; Validated	100.0
KOG1758\|consensus		159		100.0
PRK06228		131	F0F1 ATP synthase subunit epsilon; Validated	100.0
TIGR03166		122	alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit	99.98
PRK13447		136	F0F1 ATP synthase subunit epsilon; Provisional	99.97
PRK13442		89	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.97
PRK13449		88	atpC F0F1 ATP synthase subunit epsilon; Provisiona	99.97
PF02823		80	ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain,	99.96
PF00401		48	ATP-synt_DE: ATP synthase, Delta/Epsilon chain, lo	98.86
PRK10579		94	hypothetical protein; Provisional	89.03

>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated	Back alignment and domain information

Probab=100.00  E-value=1.8e-41  Score=244.86  Aligned_cols=127  Identities=17%  Similarity=0.241  Sum_probs=121.8

Q ss_pred             CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899           1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD   80 (139)
Q Consensus         1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~   80 (139)
                      |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+ |.++.|+|+|||++|.+|.|+|+++
T Consensus         4 ~~l~IvTP~~~~~~~-~v~~V~l~t~~G~~gIL~~Haplit~L~~G~~~i~~~~-~~~~~~~v~gGf~ev~~n~v~Ilad   81 (133)
T PRK00539          4 LRFLVLSPSGIKLDE-KIISAQVKTTEGYAGLNRNRAPLIAAIQSHVCKITFAD-KTKRSAIIGAGLLLIKKTEAKIFTE   81 (133)
T ss_pred             cEEEEEcCCCeEEec-eEEEEEEecCccCceecCCCcceEeEecceEEEEEECC-CcEEEEEEeeeEEEEECCEEEEEEC
Confidence            689999999999999 99999999999999999999999999999999998756 7888899999999999999999999


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q psy2899          81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKT  129 (139)
Q Consensus        81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~  129 (139)
                      .|+++++||.++|++++++|+++|++..++.++.+|+..|+||.+||+-
T Consensus        82 ~ae~~eeID~~~a~~a~erAe~~L~~~~~~~~~~~a~~~L~ra~~Rl~~  130 (133)
T PRK00539         82 NFVFADELDYDETLKRKKELERKIKHTKDTKLNIKIEQNLMFELLKLSE  130 (133)
T ss_pred             eEEchhhCCHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999877888999999999999999874

>CHL00063 atpE ATP synthase CF1 epsilon subunit	Back alignment and domain information

>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated	Back alignment and domain information

>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria)	Back alignment and domain information

>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]	Back alignment and domain information

>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK14736 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK13451 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK01474 atpC F0F1 ATP synthase subunit epsilon; Validated	Back alignment and domain information

>KOG1758\|consensus	Back alignment and domain information

>PRK06228 F0F1 ATP synthase subunit epsilon; Validated	Back alignment and domain information

>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon	Back alignment and domain information

>PRK13447 F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK13442 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PRK13449 atpC F0F1 ATP synthase subunit epsilon; Provisional	Back alignment and domain information

>PF02823 ATP-synt_DE_N: ATP synthase, Delta/Epsilon chain, beta-sandwich domain; InterPro: IPR020546 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PF00401 ATP-synt_DE: ATP synthase, Delta/Epsilon chain, long alpha-helix domain; InterPro: IPR020547 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane	Back alignment and domain information

>PRK10579 hypothetical protein; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		139
1aqt_A		138	Molecular Architecture Of The Rotary Motor In Atp S		2e-18
1bsh_A		138	Solution Structure Of The Epsilon Subunit Of The F1		2e-18
2e5y_A		133	Epsilon Subunit And Atp Complex Of F1f0-Atp Synthas		2e-05
2qe7_H		135	Crystal Structure Of The F1-Atpase From The Thermoa		6e-05

>pdb|1AQT|A Chain A, Epsilon Subunit Of F1f0-Atp Synthase From Escherichia Coli Length = 138

Back alignment and structure

Iteration: 1

Score = 87.8 bits (216), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/130 (37%), Positives = 71/130 (54%), Gaps = 2/130 (1%) Query: 2 RIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFXXXXXXXXXXXXXX 61 +D+VS E +FS +E I + G G+LG+YP H+PL+T IKPG Sbjct: 5 HLDVVSAEQQMFSGL-VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFI- 62 Query: 62 FVSGGIIDIQPDSVIVLADTAIHGSDLVXXXXXXXXXXXXXXXYNKKSNIDYSITKAKLA 121 ++SGGI+++QP +V VLADTAI G DL + ++DY+ A+LA Sbjct: 63 YLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELA 122 Query: 122 IIIAQLKTIQ 131 IAQL+ I+ Sbjct: 123 KAIAQLRVIE 132

PyMOL of 1aqt

>pdb|1BSH|A Chain A, Solution Structure Of The Epsilon Subunit Of The F1- Atpsynthase From Escherichia Coli And Orientation Of The Subunit Relative To The Beta Subunits Of The Complex Length = 138

Back alignment and structure

>pdb|2E5Y|A Chain A, Epsilon Subunit And Atp Complex Of F1f0-Atp Synthase From The Thermophilic Bacillus Ps3 Length = 133

Back alignment and structure

>pdb|2QE7|H Chain H, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 135

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		139
1aqt_A		138	ATP synthase; hydrolase, ATPase, epsilon subunit;	2e-34
2e5y_A		133	ATP synthase epsilon chain; F1FO ATP synthase, F1-	5e-33
2qe7_H		135	ATP synthase subunit epsilon; blockage of ATP hydr	2e-30
2w6j_H		168	F1-ATPase delta subunit; ATP phosphorylase (H+ tra	5e-30
2xok_H		160	ATP synthase; hydrolase, ATP-binding, F(O), F(1),	1e-29
2ck3_H		146	ATP synthase subunit delta\, mitochondrial; hydrol	2e-28
3oee_H		138	ATP synthase subunit delta; ATP phosphatase, F1F0	3e-28
2rq6_A		138	ATP synthase epsilon chain; F1FO ATP synthase, F1-	4e-28

>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H* Length = 138	Back alignment and structure

 Score =  115 bits (291), Expect = 2e-34
 Identities = 57/134 (42%), Positives = 84/134 (62%), Gaps = 2/134 (1%)

Query: 1   MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
             +D+VS E  +FS   +E I + G  G+LG+YP H+PL+T IKPG IRI       E+ 
Sbjct: 4   YHLDVVSAEQQMFS-GLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHG-HEEF 61

Query: 61  IFVSGGIIDIQPDSVIVLADTAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKL 120
           I++SGGI+++QP +V VLADTAI G DL E +  + K   E  + +   ++DY+   A+L
Sbjct: 62  IYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAEL 121

Query: 121 AIIIAQLKTIQYLR 134
           A  IAQL+ I+  +
Sbjct: 122 AKAIAQLRVIELTK 135

PyMOL of 1aqt

>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A Length = 133	Back alignment and structure

>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 135	Back alignment and structure

>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H Length = 168	Back alignment and structure

>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 160	Back alignment and structure

>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H* Length = 146	Back alignment and structure

>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* Length = 138	Back alignment and structure

>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A Length = 138	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		139
1aqt_A		138	ATP synthase; hydrolase, ATPase, epsilon subunit;	100.0
2e5y_A		133	ATP synthase epsilon chain; F1FO ATP synthase, F1-	100.0
2rq6_A		138	ATP synthase epsilon chain; F1FO ATP synthase, F1-	100.0
2qe7_H		135	ATP synthase subunit epsilon; blockage of ATP hydr	100.0
2ck3_H		146	ATP synthase subunit delta\, mitochondrial; hydrol	100.0
2xok_H		160	ATP synthase; hydrolase, ATP-binding, F(O), F(1),	100.0
2w6j_H		168	F1-ATPase delta subunit; ATP phosphorylase (H+ tra	100.0
3oee_H		138	ATP synthase subunit delta; ATP phosphatase, F1F0	100.0
3hqx_A		111	UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MC	90.03
3eo6_A		106	Protein of unknown function (DUF1255); AFE_2634, s	88.92

>1aqt_A ATP synthase; hydrolase, ATPase, epsilon subunit; 2.30A {Escherichia coli} SCOP: a.2.10.1 b.93.1.1 PDB: 1qo1_J 1bsh_A 1bsn_A 1fs0_E 3oaa_H*	Back alignment and structure

Probab=100.00  E-value=3e-43  Score=254.52  Aligned_cols=132  Identities=43%  Similarity=0.688  Sum_probs=127.9

Q ss_pred             CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899           1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD   80 (139)
Q Consensus         1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~   80 (139)
                      |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+++.|+||+++|+..+ |.+++|+|+|||++|.+|.|+|+++
T Consensus         4 l~l~ivtP~~~~~~~-~v~~V~~p~~~Ge~GILp~H~p~it~L~~G~v~i~~~~-g~~~~~~v~gGf~ev~~~~vtIla~   81 (138)
T 1aqt_A            4 YHLDVVSAEQQMFSG-LVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQH-GHEEFIYLSGGILEVQPGNVTVLAD   81 (138)
T ss_dssp             EEEEEEESSCEEEEE-EEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETT-TEEEEEEESSEEEEEETTEEEEEES
T ss_pred             EEEEEEcCCceEEee-eEEEEEEECCcCCeEecCCCcceEeEecceEEEEEECC-CcEEEEEEeCcEEEEECCEEEEEEe
Confidence            689999999999999 99999999999999999999999999999999999877 8999999999999999999999999


Q ss_pred             ccccCCCCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy2899          81 TAIHGSDLVEKQIEKEKILLENILYNKKSNIDYSITKAKLAIIIAQLKTIQYLR  134 (139)
Q Consensus        81 ~a~~~~~iD~~~a~~~~~~a~~~l~~~~~~~~~~~a~~~l~ra~~rl~~~~~~~  134 (139)
                      .|+++++||.++|++++++|+++|+++.++.++.+|+++|+||.+||++.+.++
T Consensus        82 ~A~~~~diD~~~a~~a~~~Ae~~l~~~~~~~~~~~a~~al~rA~arl~~~~~~~  135 (138)
T 1aqt_A           82 TAIRGQDLDEARAMEAKRKAEEHISSSHGDVDYAQASAELAKAIAQLRVIELTK  135 (138)
T ss_dssp             SEEEGGGCCHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEhhhCCHHHHHHHHHHHHHHHhhCcChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999998899999999999999999999998755

PyMOL of 1aqt

>2e5y_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, hydrolase; HET: ATP; 1.92A {Bacillus SP} PDB: 2e5t_A 2e5u_A	Back alignment and structure

>2rq6_A ATP synthase epsilon chain; F1FO ATP synthase, F1-ATPase, epsilon subunit, ATP synthesis, CF1, hydrogen ION transport, hydrolase; NMR {Thermosynechococcus elongatus} PDB: 2rq7_A	Back alignment and structure

>2qe7_H ATP synthase subunit epsilon; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP}	Back alignment and structure

>2ck3_H ATP synthase subunit delta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.2.10.1 b.93.1.1 PDB: 1e79_H* 1h8e_H* 2jdi_H* 2v7q_H* 2wss_H* 2xnd_H*	Back alignment and structure

>2xok_H ATP synthase; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae}	Back alignment and structure

>2w6j_H F1-ATPase delta subunit; ATP phosphorylase (H+ transporting), transit peptide, F1FO ATP synthase, ATP phosphorylase; 3.84A {Bos taurus} PDB: 2w6h_H 2w6i_H	Back alignment and structure

>3oee_H ATP synthase subunit delta; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_H* 3fks_H 2hld_H* 3oeh_H* 3ofn_H* 3zry_H* 3oe7_H* 4b2q_H*	Back alignment and structure

>3hqx_A UPF0345 protein aciad0356; DUF1255,PF06865,PSI2,MCSG, structural genomics, protein STRU initiative, midwest center for structural genomics; 1.66A {Acinetobacter SP} SCOP: b.82.1.0	Back alignment and structure

>3eo6_A Protein of unknown function (DUF1255); AFE_2634, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 0.97A {Acidithiobacillus ferrooxidans ATCC23270}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		139
d1aqta2		85	b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synt	8e-23
d2jdih2		85	b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP sy	7e-20
d1aqta1		50	a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP sy	5e-07

>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]} Length = 85	Back information, alignment and structure


class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 83.2 bits (206), Expect = 8e-23
 Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 2/85 (2%)

Query: 1  MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKC 60
            +D+VS E  +FS   +E I + G  G+LG+YP H+PL+T IKPG IRI + +   E+ 
Sbjct: 3  YHLDVVSAEQQMFSGL-VEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRI-VKQHGHEEF 60

Query: 61 IFVSGGIIDIQPDSVIVLADTAIHG 85
          I++SGGI+++QP +V VLADTAI G
Sbjct: 61 IYLSGGILEVQPGNVTVLADTAIRG 85

PyMOL of d1aqta2

>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]} Length = 85	Back information, alignment and structure

>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]} Length = 50	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		139
d1aqta2		85	Epsilon subunit of F1F0-ATP synthase N-terminal do	99.97
d2jdih2		85	Epsilon subunit of F1F0-ATP synthase N-terminal do	99.94
d1aqta1		50	Epsilon subunit of F1F0-ATP synthase C-terminal do	98.93
d2jdih1		44	Epsilon subunit of F1F0-ATP synthase C-terminal do	92.86

>d1aqta2 b.93.1.1 (A:2-86) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

class: All beta proteins
fold: Epsilon subunit of F1F0-ATP synthase N-terminal domain
superfamily: Epsilon subunit of F1F0-ATP synthase N-terminal domain
family: Epsilon subunit of F1F0-ATP synthase N-terminal domain
domain: Epsilon subunit of F1F0-ATP synthase N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.1e-31  Score=174.10  Aligned_cols=83  Identities=51%  Similarity=0.854  Sum_probs=79.9

Q ss_pred             CEEEEEecCeeeeecCceeEEEEecCceeeeecCCCcceeeeecCeEEEEEECCCCeEEEEEEeccEEEEECCEEEEEcc
Q psy2899           1 MRIDIVSIEGLLFSNKNIEFIVLPGELGDLGVYPLHSPLITCIKPGFIRIKISKKIEEKCIFVSGGIIDIQPDSVIVLAD   80 (139)
Q Consensus         1 ~~l~IvtP~~~~f~~~~v~~V~~~t~~G~~gIL~~H~p~it~L~~G~i~i~~~~~~~~~~~~v~gG~~~v~~~~v~Ila~   80 (139)
                      |+|+|+||++.+|++ +|++|++||.+|+|||||||+|+|+.|.||+++|+..+ |+++.|+|+|||+++.+|+|+|+++
T Consensus         3 f~l~IvtP~~~~~~~-~v~~v~~~~~~G~~gIL~~H~p~i~~L~~g~v~i~~~~-~~~~~~~v~gG~~~v~~n~v~Il~~   80 (85)
T d1aqta2           3 YHLDVVSAEQQMFSG-LVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQH-GHEEFIYLSGGILEVQPGNVTVLAD   80 (85)
T ss_dssp             EEEEEEESSCEEEEE-EEEEEEEEBSSSEEEECTTCCCEEEEECSEEEEEEETT-TEEEEEEESSEEEEEETTEEEEEES
T ss_pred             EEEEEECCCceEEee-EEEEEEEECCcCCEEEcCCCcceeEEecCCEEEEEECC-CCEEEEEEcccEEEEECCEEEEEEe
Confidence            689999999999999 99999999999999999999999999999999999877 8999999999999999999999999


Q ss_pred             ccccC
Q psy2899          81 TAIHG   85 (139)
Q Consensus        81 ~a~~~   85 (139)
                      .|+++
T Consensus        81 ~A~rg   85 (85)
T d1aqta2          81 TAIRG   85 (85)
T ss_dssp             SEEEG
T ss_pred             eeecC
Confidence            99863

PyMOL of d1aqta2

>d2jdih2 b.93.1.1 (H:17-101) Epsilon subunit of F1F0-ATP synthase N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1aqta1 a.2.10.1 (A:87-136) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2jdih1 a.2.10.1 (H:102-145) Epsilon subunit of F1F0-ATP synthase C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure