Psyllid ID: psy2900

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISGSSVV
ccccHHcHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccccEEEEEccccEEcccccEEEEEEEccccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
ccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccccccccccHHHcEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHcccccEEEEEEcccHccccccccHHHcccccccHHHHHHcccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccc
mvsaskmrktqnrmhaarpySVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITtdkglcgsiNSNIFRILIKKINEleskgnfiDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAtiskllpfsdkyltfpiknkyssyyIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISGSSVV
mvsaskmrktqnrmhaarpysvnIKRIICNLLQTHFECRNlffkkknriKRVAIILittdkglcgsinSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATItkelseiisgssvv
MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISGSSVV
******************PYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATIT*************
MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQ*********FKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPF***************YYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISGSSVV
***************AARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSE********
****************ARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISGSS**
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MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELKLIYNKTRQATITKELSEIISGSSVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query265 2.2.26 [Sep-21-2011]
A6T471289 ATP synthase gamma chain yes N/A 0.996 0.913 0.483 3e-74
A4GAH0289 ATP synthase gamma chain yes N/A 0.996 0.913 0.490 7e-73
A1VIV1288 ATP synthase gamma chain yes N/A 0.992 0.913 0.467 1e-71
B1Y3S8293 ATP synthase gamma chain yes N/A 1.0 0.904 0.475 1e-71
A1K1S1289 ATP synthase gamma chain yes N/A 0.988 0.906 0.456 1e-71
Q3SF65290 ATP synthase gamma chain yes N/A 1.0 0.913 0.449 3e-71
A1TJ40288 ATP synthase gamma chain yes N/A 0.992 0.913 0.471 2e-70
Q12GQ1288 ATP synthase gamma chain yes N/A 0.992 0.913 0.467 3e-70
Q39KX7291 ATP synthase gamma chain yes N/A 1.0 0.910 0.439 4e-70
A1W2T6288 ATP synthase gamma chain yes N/A 0.992 0.913 0.460 5e-70
>sp|A6T471|ATPG_JANMA ATP synthase gamma chain OS=Janthinobacterium sp. (strain Marseille) GN=atpG PE=3 SV=1 Back     alignment and function desciption
 Score =  278 bits (711), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 128/265 (48%), Positives = 187/265 (70%), Gaps = 1/265 (0%)

Query: 1   MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
           MV+ASKMRK Q+RMHAARPYS  I+ I  NL Q + E  + F  K +  K V  I++TTD
Sbjct: 26  MVAASKMRKAQDRMHAARPYSDKIRNIAANLSQANPEYTHPFLVKSDASKTVGFIIVTTD 85

Query: 61  KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
           KGLCG +N+N  RI+  K+ ELE++G  ++   IG KGL FLN I  +      QIGD  
Sbjct: 86  KGLCGGMNTNSLRIVTTKLRELEAEGKKVEAVAIGNKGLGFLNRIGARVVSHAVQIGDTP 145

Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
           + +KL   +K+++  Y++  +D++Y++YTKFINT++Q+  + +LLP +   L    ++  
Sbjct: 146 HLDKLIGPVKVMLDAYQDGKLDAVYVVYTKFINTMKQEPMMEQLLPLAVDKLKAD-EDSL 204

Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
           +  YIYE +   +I++L +RY+EALI+Q+++EN+ASEQ +RM+AMKSAS+NA  +I ELK
Sbjct: 205 AWDYIYEPDAQTVIDELLVRYVEALIFQAVAENLASEQSARMVAMKSASDNAGSVISELK 264

Query: 241 LIYNKTRQATITKELSEIISGSSVV 265
           L+YNKTRQA ITKELSEI++G++ V
Sbjct: 265 LVYNKTRQAAITKELSEIVAGAAAV 289
Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.
Janthinobacterium sp. (strain Marseille) (taxid: 375286)
>sp|A4GAH0|ATPG_HERAR ATP synthase gamma chain OS=Herminiimonas arsenicoxydans GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|A1VIV1|ATPG_POLNA ATP synthase gamma chain OS=Polaromonas naphthalenivorans (strain CJ2) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|B1Y3S8|ATPG_LEPCP ATP synthase gamma chain OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|A1K1S1|ATPG_AZOSB ATP synthase gamma chain OS=Azoarcus sp. (strain BH72) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|Q3SF65|ATPG_THIDA ATP synthase gamma chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|A1TJ40|ATPG_ACIAC ATP synthase gamma chain OS=Acidovorax citrulli (strain AAC00-1) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|Q12GQ1|ATPG_POLSJ ATP synthase gamma chain OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|Q39KX7|ATPG_BURS3 ATP synthase gamma chain OS=Burkholderia sp. (strain 383) GN=atpG PE=3 SV=1 Back     alignment and function description
>sp|A1W2T6|ATPG_ACISJ ATP synthase gamma chain OS=Acidovorax sp. (strain JS42) GN=atpG PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
398832325289 ATP synthase, F1 gamma subunit [Herbaspi 0.996 0.913 0.509 9e-78
300313647290 F0F1-type ATP synthase subunit gamma [He 0.996 0.910 0.498 2e-76
409408152290 F0F1-type ATP synthase subunit gamma [He 0.996 0.910 0.498 2e-76
415903480290 ATP synthase gamma chain [Herbaspirillum 0.996 0.910 0.498 2e-76
399021083289 ATP synthase, F1 gamma subunit [Herbaspi 0.996 0.913 0.490 2e-75
340789572290 ATP synthase subunit gamma [Collimonas f 1.0 0.913 0.498 4e-75
329913258289 ATP synthase gamma chain [Oxalobacterace 0.996 0.913 0.501 3e-74
152979965289 ATP synthase F0F1 subunit gamma [Janthin 0.996 0.913 0.483 2e-72
445493999291 ATP synthase subunit gamma [Janthinobact 0.996 0.907 0.483 1e-71
134096553289 F0F1 ATP synthase subunit gamma [Hermini 0.996 0.913 0.490 4e-71
>gi|398832325|ref|ZP_10590486.1| ATP synthase, F1 gamma subunit [Herbaspirillum sp. YR522] gi|398223422|gb|EJN09766.1| ATP synthase, F1 gamma subunit [Herbaspirillum sp. YR522] Back     alignment and taxonomy information
 Score =  296 bits (757), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 135/265 (50%), Positives = 191/265 (72%), Gaps = 1/265 (0%)

Query: 1   MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
           MV+ASKMRK Q+RMHAARPYS  I+ I  NL Q + E  + F  K++  KRV  I++TTD
Sbjct: 26  MVAASKMRKAQDRMHAARPYSDKIRNIAANLSQANPEYTHPFMVKQDTAKRVGFIVVTTD 85

Query: 61  KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
           KGLCG +N+N  R+L  KI ELE KG  I+   IG KGL FLN I  +    +TQ+GD  
Sbjct: 86  KGLCGGMNTNSLRLLTSKIRELEGKGLAIETVAIGNKGLGFLNRIGARVAANVTQLGDTP 145

Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
           +  KL   +K+L+  Y+   +D++Y++YTKFINT++Q+AT+ +LLP +   L    +  +
Sbjct: 146 HLEKLIGPVKVLLDAYQEGKLDAVYLVYTKFINTMRQEATLQQLLPLTSDKLKAD-EGSH 204

Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
           S  YIYE ++  ++++L +RY+EALIYQ+++EN+ASEQ +RM+AMK+AS+NA  +I ELK
Sbjct: 205 SWDYIYEPDVQSVVDELLVRYVEALIYQAVAENMASEQSARMVAMKAASDNAGSVIGELK 264

Query: 241 LIYNKTRQATITKELSEIISGSSVV 265
           L+YNKTRQA ITKELSEI++G++ V
Sbjct: 265 LVYNKTRQAAITKELSEIVAGAAAV 289

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria
>gi|300313647|ref|YP_003777739.1| F0F1-type ATP synthase subunit gamma [Herbaspirillum seropedicae SmR1] gi|300076432|gb|ADJ65831.1| F0F1-type ATP synthase, gamma subunit protein [Herbaspirillum seropedicae SmR1] Back     alignment and taxonomy information
>gi|409408152|ref|ZP_11256596.1| F0F1-type ATP synthase subunit gamma [Herbaspirillum sp. GW103] gi|386432608|gb|EIJ45435.1| F0F1-type ATP synthase subunit gamma [Herbaspirillum sp. GW103] Back     alignment and taxonomy information
>gi|415903480|ref|ZP_11552233.1| ATP synthase gamma chain [Herbaspirillum frisingense GSF30] gi|407763691|gb|EKF72315.1| ATP synthase gamma chain [Herbaspirillum frisingense GSF30] Back     alignment and taxonomy information
>gi|399021083|ref|ZP_10723202.1| ATP synthase, F1 gamma subunit [Herbaspirillum sp. CF444] gi|398093067|gb|EJL83457.1| ATP synthase, F1 gamma subunit [Herbaspirillum sp. CF444] Back     alignment and taxonomy information
>gi|340789572|ref|YP_004755037.1| ATP synthase subunit gamma [Collimonas fungivorans Ter331] gi|340554839|gb|AEK64214.1| ATP synthase gamma chain [Collimonas fungivorans Ter331] Back     alignment and taxonomy information
>gi|329913258|ref|ZP_08275909.1| ATP synthase gamma chain [Oxalobacteraceae bacterium IMCC9480] gi|327545402|gb|EGF30619.1| ATP synthase gamma chain [Oxalobacteraceae bacterium IMCC9480] Back     alignment and taxonomy information
>gi|152979965|ref|YP_001355318.1| ATP synthase F0F1 subunit gamma [Janthinobacterium sp. Marseille] gi|166215100|sp|A6T471.1|ATPG_JANMA RecName: Full=ATP synthase gamma chain; AltName: Full=ATP synthase F1 sector gamma subunit; AltName: Full=F-ATPase gamma subunit gi|151280042|gb|ABR88452.1| F-type H+-transporting ATPase gamma chain [Janthinobacterium sp. Marseille] Back     alignment and taxonomy information
>gi|445493999|ref|ZP_21461043.1| ATP synthase subunit gamma [Janthinobacterium sp. HH01] gi|444790160|gb|ELX11707.1| ATP synthase subunit gamma [Janthinobacterium sp. HH01] Back     alignment and taxonomy information
>gi|134096553|ref|YP_001101628.1| F0F1 ATP synthase subunit gamma [Herminiimonas arsenicoxydans] gi|166215099|sp|A4GAH0.1|ATPG_HERAR RecName: Full=ATP synthase gamma chain; AltName: Full=ATP synthase F1 sector gamma subunit; AltName: Full=F-ATPase gamma subunit gi|133740456|emb|CAL63507.1| ATP synthase gamma chain (ATP synthase F1 sector gamma subunit) [Herminiimonas arsenicoxydans] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query265
TIGR_CMR|CPS_0061287 CPS_0061 "ATP synthase F1, gam 0.984 0.909 0.415 5.5e-54
UNIPROTKB|P0ABA6287 atpG [Escherichia coli K-12 (t 0.981 0.905 0.404 2.4e-51
TIGR_CMR|SO_4748286 SO_4748 "ATP synthase F1, gamm 0.984 0.912 0.373 1.5e-49
TIGR_CMR|CBU_1944289 CBU_1944 "ATP synthase, F1 gam 0.988 0.906 0.398 2e-49
UNIPROTKB|Q9KNH4288 atpG "ATP synthase gamma chain 0.992 0.913 0.377 1.1e-48
TIGR_CMR|VC_2765288 VC_2765 "ATP synthase F1, gamm 0.992 0.913 0.377 1.1e-48
TIGR_CMR|DET_0563285 DET_0563 "ATP synthase F1, gam 0.969 0.901 0.352 8e-37
TIGR_CMR|CHY_2546282 CHY_2546 "ATP synthase F1, gam 0.962 0.904 0.316 2.8e-34
TIGR_CMR|GSU_0112287 GSU_0112 "ATP synthase F1, gam 0.981 0.905 0.324 8.5e-33
TIGR_CMR|BA_5548286 BA_5548 "ATP synthase F1, gamm 0.977 0.905 0.289 2.3e-30
TIGR_CMR|CPS_0061 CPS_0061 "ATP synthase F1, gamma subunit" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
 Score = 558 (201.5 bits), Expect = 5.5e-54, P = 5.5e-54
 Identities = 110/265 (41%), Positives = 175/265 (66%)

Query:     1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
             MV+ASKMRK Q  M A+RPY+ NI+ +I ++   + E R+ + +++   KRV  I+++TD
Sbjct:    26 MVAASKMRKAQEGMAASRPYATNIRNVIGHIALGNLEYRHPYMEERET-KRVGYIVVSTD 84

Query:    61 KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
             +GLCG +N N+F+ ++    E ++ G  ++F V+G K  +F N +  K    I+ +GD  
Sbjct:    85 RGLCGGLNINLFKKVLADAAEKQASGAEVEFGVVGSKATSFFNNMGAKVSAQISGLGDSP 144

Query:   121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
                 L   + +++K Y N  ID +Y++Y KF+NT+ Q ATI +LLP   K     I +++
Sbjct:   145 SLTDLVGSVAVMLKAYDNGEIDKLYVVYNKFVNTMTQDATIDQLLPLP-KSDDEEISHRW 203

Query:   181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
                YIYE +   L++KL +RYIE+ +YQ + ENIA EQ +RM+AMK+A++NA  +ID+L+
Sbjct:   204 D--YIYEPDANSLLDKLLVRYIESQVYQGVVENIACEQAARMVAMKAATDNAGDLIDDLQ 261

Query:   241 LIYNKTRQATITKELSEIISGSSVV 265
             L+YNK RQA IT+EL EI++G++ V
Sbjct:   262 LVYNKARQAAITQELGEIVAGAAAV 286
GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS
GO:0045261 "proton-transporting ATP synthase complex, catalytic core F(1)" evidence=ISS
GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS
UNIPROTKB|P0ABA6 atpG [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|SO_4748 SO_4748 "ATP synthase F1, gamma subunit" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_1944 CBU_1944 "ATP synthase, F1 gamma subunit" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KNH4 atpG "ATP synthase gamma chain" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_2765 VC_2765 "ATP synthase F1, gamma subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0563 DET_0563 "ATP synthase F1, gamma subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2546 CHY_2546 "ATP synthase F1, gamma subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_0112 GSU_0112 "ATP synthase F1, gamma subunit" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|BA_5548 BA_5548 "ATP synthase F1, gamma subunit" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A1V8T2ATPG_BURMSNo assigned EC number0.42481.00.9106yesN/A
A4GAH0ATPG_HERARNo assigned EC number0.49050.99620.9134yesN/A
A1TJ40ATPG_ACIACNo assigned EC number0.47160.99240.9131yesN/A
A2S6J9ATPG_BURM9No assigned EC number0.42481.00.9106yesN/A
A3NF41ATPG_BURP6No assigned EC number0.42481.00.9106yesN/A
Q0K5M6ATPG_CUPNHNo assigned EC number0.44190.99620.9072yesN/A
B1XSD3ATPG_POLNSNo assigned EC number0.43770.99620.9134yesN/A
Q477Z2ATPG_DECARNo assigned EC number0.47160.98490.9125yesN/A
Q46VX9ATPG_CUPPJNo assigned EC number0.44190.99620.9072yesN/A
B9MBA2ATPG_ACIETNo assigned EC number0.46030.99240.9131yesN/A
B2JJ96ATPG_BURP8No assigned EC number0.42800.99620.8949yesN/A
Q7VU45ATPG_BORPENo assigned EC number0.42230.99620.8770yesN/A
Q39KX7ATPG_BURS3No assigned EC number0.43981.00.9106yesN/A
A1WF57ATPG_VEREINo assigned EC number0.45760.97350.8865yesN/A
B2T7K1ATPG_BURPPNo assigned EC number0.43121.00.9013yesN/A
Q13SQ1ATPG_BURXLNo assigned EC number0.43121.00.9013yesN/A
A3P0Z1ATPG_BURP0No assigned EC number0.42481.00.9106yesN/A
Q0AJB1ATPG_NITECNo assigned EC number0.42430.99240.8945yesN/A
Q7WEM8ATPG_BORBRNo assigned EC number0.42230.99620.8770yesN/A
A6T471ATPG_JANMANo assigned EC number0.48300.99620.9134yesN/A
B2UGV0ATPG_RALPJNo assigned EC number0.43820.99620.9072yesN/A
Q62FR6ATPG_BURMANo assigned EC number0.42481.00.9106yesN/A
A3MQJ8ATPG_BURM7No assigned EC number0.42481.00.9106yesN/A
Q12GQ1ATPG_POLSJNo assigned EC number0.46790.99240.9131yesN/A
B4EEY8ATPG_BURCJNo assigned EC number0.43601.00.9106yesN/A
C5CNB2ATPG_VARPSNo assigned EC number0.46150.97350.8865yesN/A
Q2YCA4ATPG_NITMUNo assigned EC number0.43651.00.9044yesN/A
A2SC69ATPG_METPPNo assigned EC number0.45110.99620.9072yesN/A
A9AJG3ATPG_BURM1No assigned EC number0.43981.00.9106yesN/A
B3R7L6ATPG_CUPTRNo assigned EC number0.44190.99620.9072yesN/A
Q2STE8ATPG_BURTANo assigned EC number0.42851.00.9106yesN/A
Q7W3A9ATPG_BORPANo assigned EC number0.42230.99620.8770yesN/A
A9BPU6ATPG_DELASNo assigned EC number0.44521.00.9137yesN/A
Q5P4E3ATPG_AROAENo assigned EC number0.44560.98860.9065yesN/A
A1VIV1ATPG_POLNANo assigned EC number0.46790.99240.9131yesN/A
Q3SF65ATPG_THIDANo assigned EC number0.44901.00.9137yesN/A
Q63PH9ATPG_BURPSNo assigned EC number0.42481.00.9106yesN/A
A1K1S1ATPG_AZOSBNo assigned EC number0.45690.98860.9065yesN/A
Q0BJL6ATPG_BURCMNo assigned EC number0.43601.00.9106yesN/A
Q7P096ATPG_CHRVONo assigned EC number0.39620.99240.9131yesN/A
B1YQL3ATPG_BURA4No assigned EC number0.43601.00.9106yesN/A
Q223D5ATPG_RHOFDNo assigned EC number0.44480.99620.8859yesN/A
Q1LHK9ATPG_RALMENo assigned EC number0.44560.99620.9072yesN/A
A1W2T6ATPG_ACISJNo assigned EC number0.46030.99240.9131yesN/A
Q82XP9ATPG_NITEUNo assigned EC number0.42430.99240.8945yesN/A
Q1GXM9ATPG_METFKNo assigned EC number0.43981.00.9106yesN/A
B1Y3S8ATPG_LEPCPNo assigned EC number0.47561.00.9044yesN/A
Q48AW1ATPG_COLP3No assigned EC number0.41500.98490.9094yesN/A
Q8XU75ATPG_RALSONo assigned EC number0.43820.99620.9072yesN/A
Q3JXV7ATPG_BURP1No assigned EC number0.42481.00.9106yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
PRK05621284 PRK05621, PRK05621, F0F1 ATP synthase subunit gamm 4e-96
pfam00231288 pfam00231, ATP-synt, ATP synthase 5e-89
COG0224287 COG0224, AtpG, F0F1-type ATP synthase, gamma subun 4e-83
cd12151282 cd12151, F1-ATPase_gamma, mitochondrial ATP syntha 3e-79
TIGR01146286 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma 1e-74
PRK14111290 PRK14111, PRK14111, F0F1 ATP synthase subunit gamm 7e-66
PRK13427289 PRK13427, PRK13427, F0F1 ATP synthase subunit gamm 2e-50
PRK13423288 PRK13423, PRK13423, F0F1 ATP synthase subunit gamm 5e-49
PRK13422298 PRK13422, PRK13422, F0F1 ATP synthase subunit gamm 6e-48
PRK13424291 PRK13424, PRK13424, F0F1 ATP synthase subunit gamm 1e-45
PRK13425291 PRK13425, PRK13425, F0F1 ATP synthase subunit gamm 1e-39
PRK14110291 PRK14110, PRK14110, F0F1 ATP synthase subunit gamm 3e-37
PRK13426291 PRK13426, PRK13426, F0F1 ATP synthase subunit gamm 8e-37
TIGR03323285 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, 9e-12
>gnl|CDD|235535 PRK05621, PRK05621, F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information 
 Score =  283 bits (727), Expect = 4e-96
 Identities = 104/265 (39%), Positives = 165/265 (62%), Gaps = 6/265 (2%)

Query: 1   MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
           MV+ASK+RK Q R  A+RPY+  I+++I +L     E  +    ++  +KRV  I++T+D
Sbjct: 26  MVAASKLRKAQERAEASRPYAEKIRKVISHLASAS-EYDHPLLVERE-VKRVGYIVVTSD 83

Query: 61  KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
           +GLCG  NSNI + +++ I ELE++G  +   VIG+KG++F     I      T +GD  
Sbjct: 84  RGLCGGYNSNIIKKVLELIKELEAQGKEVKLIVIGRKGVDFFKRRGINVVAEYTGLGDQP 143

Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
            F +   + K L+  Y N   D +YI+Y KF+NTL Q+ T+ +LLP   +      + + 
Sbjct: 144 TFEEAIGIAKKLLDAYDNGEFDELYIVYNKFVNTLSQEPTVEQLLPLEKE----EEEEET 199

Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
           S  Y YE +   +++ L  RY+E+ IYQ++ EN ASEQ +RM AMK+A++NA  +I +L 
Sbjct: 200 SWDYEYEPDAEEILDALLPRYVESQIYQALLENKASEQAARMTAMKNATDNAGDLIKKLT 259

Query: 241 LIYNKTRQATITKELSEIISGSSVV 265
           L+YN+ RQA IT+E++EI+ G+  +
Sbjct: 260 LVYNRARQAAITQEITEIVGGAEAL 284

Length = 284
>gnl|CDD|215808 pfam00231, ATP-synt, ATP synthase Back     alignment and domain information
>gnl|CDD|223302 COG0224, AtpG, F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|213394 cd12151, F1-ATPase_gamma, mitochondrial ATP synthase gamma subunit Back     alignment and domain information
>gnl|CDD|233292 TIGR01146, ATPsyn_F1gamma, ATP synthase, F1 gamma subunit Back     alignment and domain information
>gnl|CDD|184515 PRK14111, PRK14111, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172049 PRK13427, PRK13427, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|237384 PRK13423, PRK13423, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184046 PRK13422, PRK13422, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|172047 PRK13424, PRK13424, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|139564 PRK13425, PRK13425, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|184514 PRK14110, PRK14110, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|237385 PRK13426, PRK13426, F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>gnl|CDD|211807 TIGR03323, alt_F1F0_F1_gam, alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 265
COG0224287 AtpG F0F1-type ATP synthase, gamma subunit [Energy 100.0
PRK13427289 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK14111290 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13424291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13423288 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13425291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13426291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK13422298 F0F1 ATP synthase subunit gamma; Provisional 100.0
PRK14110291 F0F1 ATP synthase subunit gamma; Provisional 100.0
PF00231290 ATP-synt: ATP synthase This Pfam entry corresponds 100.0
TIGR01146287 ATPsyn_F1gamma ATP synthase, F1 gamma subunit. Thi 100.0
PRK05621284 F0F1 ATP synthase subunit gamma; Validated 100.0
TIGR03323285 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit 100.0
KOG1531|consensus304 100.0
>COG0224 AtpG F0F1-type ATP synthase, gamma subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-82  Score=556.46  Aligned_cols=264  Identities=37%  Similarity=0.624  Sum_probs=243.3

Q ss_pred             CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900           1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN   80 (265)
Q Consensus         1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~   80 (265)
                      |||+|||+|+|+++++++||++++.+++.++.+...+..||++......++++|||||||||||||||+||+|.+...++
T Consensus        22 mVaasKl~kaq~~~~a~~pY~e~i~~vl~~l~~~~~~~~~p~~~~~~e~kr~~~IviTSDrGLcG~~Nsni~k~~~~~i~  101 (287)
T COG0224          22 MVAASKLRKAQERAEAARPYAEKIRKVLGHLASANLELDHPLLKPTREVKRVLYIVITSDRGLCGGFNSNIFKKVENLIK  101 (287)
T ss_pred             HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcccccCCcccccccCCCceEEEEEecCcchhhhhhHHHHHHHHHHHH
Confidence            89999999999999999999999999999999864456689886433488899999999999999999999999999999


Q ss_pred             hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900          81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT  160 (265)
Q Consensus        81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~  160 (265)
                      .++.+|.++.+++||+||.++|+++|.++..++.++++.|+|+.+..|++.+++.|.+|++|+++|+||+|+|+++|+|+
T Consensus       102 ~~~~~~~~~~li~iG~Kg~~~f~~~~~~i~~~~~~l~~~p~~~~~~~i~~~~~~~~~~g~~d~v~l~yn~f~n~~sq~~~  181 (287)
T COG0224         102 ELKNKGKEVKLILIGKKGIDFFKKRGYNILESFTGLGDNPSFEEAIQIADKILDAFLEGEIDELYLVYNKFKNALSQEPT  181 (287)
T ss_pred             hhhccCCceEEEEEchHHHHHHHhcCcchhhHhhccccCCCHHHHHHHHHHHHHHHhCCCCceEEEEecccccceeeeee
Confidence            99888888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCCceeeeeccccc-eeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhH
Q psy2900         161 ISKLLPFSDKYLTFPIKNKY-SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDEL  239 (265)
Q Consensus       161 ~~~llP~~~~~~~~~~~~~~-~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L  239 (265)
                      +++|||+++.... ...... .|+|.|||+++++++.|+|+|+.++||+||+||.||||+|||+||++|||||+|||++|
T Consensus       182 ~~~llP~~~~~~~-~~~~~~~~~~~efEpd~e~il~~Ll~~Y~~~~iy~alles~asE~aaRm~AM~~ATdNA~~lI~~l  260 (287)
T COG0224         182 VQQLLPLDKIEDE-AEEEEPGLWDYEFEPDAEEILETLLPRYLESQLYGALLESKASEHAARMTAMKNATDNAGDLIKEL  260 (287)
T ss_pred             eEEEecCCcccch-hhhccccccceeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            9999999743210 001111 27899999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhcccchhhhHHHhhhccCCcCC
Q psy2900         240 KLIYNKTRQATITKELSEIISGSSVV  265 (265)
Q Consensus       240 ~~~yNk~RQ~~IT~El~EIv~Ga~al  265 (265)
                      ++.|||+||++||+||+|||+||+||
T Consensus       261 ~l~yNk~RQa~ITqEL~EIV~Ga~AL  286 (287)
T COG0224         261 TLVYNKARQAAITQELIEIVGGAEAL  286 (287)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            99999999999999999999999996

>PRK13427 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14111 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13424 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13423 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13425 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13426 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK13422 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PRK14110 F0F1 ATP synthase subunit gamma; Provisional Back     alignment and domain information
>PF00231 ATP-synt: ATP synthase This Pfam entry corresponds to chain g; InterPro: IPR000131 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>TIGR01146 ATPsyn_F1gamma ATP synthase, F1 gamma subunit Back     alignment and domain information
>PRK05621 F0F1 ATP synthase subunit gamma; Validated Back     alignment and domain information
>TIGR03323 alt_F1F0_F1_gam alternate F1F0 ATPase, F1 subunit gamma Back     alignment and domain information
>KOG1531|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3oaa_G286 Structure Of The E.Coli F1-Atp Synthase Inhibited B 1e-60
1fs0_G230 Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Le 4e-46
2qe7_G286 Crystal Structure Of The F1-Atpase From The Thermoa 3e-35
2w6e_G298 Low Resolution Structures Of Bovine Mitochondrial F 9e-17
1cow_G272 Bovine Mitochondrial F1-Atpase Complexed With Aurov 1e-16
2jdi_G273 Ground State Structure Of F1-Atpase From Bovine Hea 1e-16
1mab_G270 Rat Liver F1-Atpase Length = 270 1e-16
2f43_G273 Rat Liver F1-atpase Length = 273 2e-16
2xok_G311 Refined Structure Of Yeast F1c10 Atpase Complex To 8e-13
2hld_G278 Crystal Structure Of Yeast Mitochondrial F1-Atpase 1e-12
3oe7_G278 Structure Of Four Mutant Forms Of Yeast F1 Atpase: 3e-12
1ohh_G100 Bovine Mitochondrial F1-Atpase Complexed With The I 5e-12
>pdb|3OAA|G Chain G, Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit Epsilon Length = 286 Back     alignment and structure 
Iteration: 1

 Score =  229 bits (584), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 106/270 (39%), Positives = 179/270 (66%), Gaps = 13/270 (4%)
Query: 1   MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
           MV+ASKMRK+Q+RM A+RPY+  ++++I +L   + E ++ + + ++ +KRV  ++++TD
Sbjct: 25  MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTD 83
Query: 61  KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
           +GLCG +N N+F+ L+ ++     KG   D  +IG KG++F N +       +T +GD  
Sbjct: 84  RGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNP 143
Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKN-- 178
             ++L   +K++++ Y    +D +YI+  KFINT+ Q  TIS+LLP        P  +  
Sbjct: 144 SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLP-------LPASDDD 196
Query: 179 --KYSSY-YIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYI 235
             K+ S+ Y+YE +   L++ L  RY+E+ +YQ + EN+ASEQ +RM+AMK+A++N   +
Sbjct: 197 DLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSL 256
Query: 236 IDELKLIYNKTRQATITKELSEIISGSSVV 265
           I EL+L+YNK RQA+IT+EL+EI+SG++ V
Sbjct: 257 IKELQLVYNKARQASITQELTEIVSGAAAV 286
>pdb|1FS0|G Chain G, Complex Of GammaEPSILON ATP SYNTHASE FROM E.COLI Length = 230 Back     alignment and structure
>pdb|2QE7|G Chain G, Crystal Structure Of The F1-Atpase From The Thermoalkaliphilic Bacterium Bacillus Sp. Ta2.A1 Length = 286 Back     alignment and structure
>pdb|2W6E|G Chain G, Low Resolution Structures Of Bovine Mitochondrial F1-Atpase During Controlled Dehydration: Hydration State 1. Length = 298 Back     alignment and structure
>pdb|1COW|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With Aurovertin B Length = 272 Back     alignment and structure
>pdb|2JDI|G Chain G, Ground State Structure Of F1-Atpase From Bovine Heart Mitochondria (Bovine F1-Atpase Crystallised In The Absence Of Azide) Length = 273 Back     alignment and structure
>pdb|1MAB|G Chain G, Rat Liver F1-Atpase Length = 270 Back     alignment and structure
>pdb|2F43|G Chain G, Rat Liver F1-atpase Length = 273 Back     alignment and structure
>pdb|2XOK|G Chain G, Refined Structure Of Yeast F1c10 Atpase Complex To 3 A Resolution Length = 311 Back     alignment and structure
>pdb|2HLD|G Chain G, Crystal Structure Of Yeast Mitochondrial F1-Atpase Length = 278 Back     alignment and structure
>pdb|3OE7|G Chain G, Structure Of Four Mutant Forms Of Yeast F1 Atpase: Gamma-I270t Length = 278 Back     alignment and structure
>pdb|1OHH|G Chain G, Bovine Mitochondrial F1-Atpase Complexed With The Inhibitor Protein If1 Length = 100 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query265
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 2e-98
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 4e-97
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 7e-84
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 7e-84
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 8e-84
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 1e-76
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Length = 286 Back     alignment and structure
 Score =  288 bits (740), Expect = 2e-98
 Identities = 103/261 (39%), Positives = 171/261 (65%), Gaps = 3/261 (1%)

Query: 1   MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
           MV+ASKMRK+Q+RM A+RPY+  ++++I +L   + E ++ + + ++ +KRV  ++++TD
Sbjct: 25  MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTD 83

Query: 61  KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
           +GLCG +N N+F+ L+ ++     KG   D  +IG KG++F N +       +T +GD  
Sbjct: 84  RGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNP 143

Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
             ++L   +K++++ Y    +D +YI+  KFINT+ Q  TIS+LLP              
Sbjct: 144 SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASDDD--DLKHK 201

Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK 240
           S  Y+YE +   L++ L  RY+E+ +YQ + EN+ASEQ +RM+AMK+A++N   +I EL+
Sbjct: 202 SWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQ 261

Query: 241 LIYNKTRQATITKELSEIISG 261
           L+YNK RQA+IT+EL+EI+SG
Sbjct: 262 LVYNKARQASITQELTEIVSG 282
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Length = 286 Back     alignment and structure
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Length = 311 Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Length = 272 Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 3oe7_G* Length = 278 Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Length = 230 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
3oaa_G286 ATP synthase gamma chain; rossmann fold, hydrolase 100.0
2qe7_G286 ATP synthase subunit gamma; blockage of ATP hydrol 100.0
2xok_G311 ATP synthase subunit gamma, mitochondrial; hydrola 100.0
3oee_G278 ATP synthase subunit gamma; ATP phosphatase, F1F0 100.0
2ck3_G272 ATP synthase subunit gamma\, mitochondrial; hydrol 100.0
1fs0_G230 ATP synthase gamma subunit; coiled coil, epsilon, 100.0
>3oaa_G ATP synthase gamma chain; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} Back     alignment and structure
Probab=100.00  E-value=1.3e-82  Score=562.84  Aligned_cols=262  Identities=40%  Similarity=0.701  Sum_probs=239.2

Q ss_pred             CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900           1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN   80 (265)
Q Consensus         1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~   80 (265)
                      |||||||||||+++++.|||++++.+++++++...++..||++..++ .+++++||||||||||||||+||+|.+.+.++
T Consensus        25 mVAaaKlrkaq~~~~~~rpY~~~i~~~l~~l~~~~~~~~~~~~~~~~-~~~~~~IvitSDrGLcG~fN~ni~k~~~~~i~  103 (286)
T 3oaa_G           25 MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTDRGLCGGLNINLFKKLLAEMK  103 (286)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCCSSCSCCC-CSEEEEEEECCSCCCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhCccccCcccccCC-CCcEEEEEEeCCcccccchhHHHHHHHHHHHH
Confidence            89999999999999999999999999999998765556788885433 78899999999999999999999999999988


Q ss_pred             hhhccCCeeeEEEecccccccccccccccceeeeeecceeeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhhhh
Q psy2900          81 ELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDILYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKAT  160 (265)
Q Consensus        81 ~~~~~~~~~~l~~iG~K~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~~~  160 (265)
                      ++...|+++.+++||+||.++|++++.++...+.++++.|+|+++..+++.+++.|.+|++|+|+||||+|+|+++|+|.
T Consensus       104 ~~~~~~~~~~l~~vG~Kg~~~~~~~~~~i~~~~~~~~~~p~~~~~~~i~~~~~~~~~~g~~d~v~lvyn~f~s~~~q~~~  183 (286)
T 3oaa_G          104 TWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPT  183 (286)
T ss_dssp             HHHTTTCEEEEEEESHHHHHHHHHHCCCEEEEECCCTTCCCHHHHHHHHHHHHHHHHTTSCSEEEEEEEEEEETTEEEEE
T ss_pred             HHHhCCCceEEEEeeHHHHHHHHHcCCCeEEeeccccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEccccccccccee
Confidence            77666778899999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             hhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhhHH
Q psy2900         161 ISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDELK  240 (265)
Q Consensus       161 ~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~L~  240 (265)
                      +++|||++....  .......|+|+|||+++++|+.|+|.|+++.||+||+||.||||+|||+||++|||||+|||++|+
T Consensus       184 ~~~lLPl~~~~~--~~~~~~~~~~~~Ep~~~~vl~~Llp~yl~~~iy~alles~aSE~aARm~AM~~At~NA~eli~~Lt  261 (286)
T 3oaa_G          184 ISQLLPLPASDD--DDLKHKSWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQ  261 (286)
T ss_dssp             EEECSSCCCCHH--HHSCCCSCCCEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCcccc--cccccCCCCceeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            999999974321  111223468999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhcccchhhhHHHhhhccCCcCC
Q psy2900         241 LIYNKTRQATITKELSEIISGSSVV  265 (265)
Q Consensus       241 ~~yNk~RQ~~IT~El~EIv~Ga~al  265 (265)
                      ++|||+||++||+||+|||+||+||
T Consensus       262 l~yNr~RQa~IT~El~EIv~Ga~Al  286 (286)
T 3oaa_G          262 LVYNKARQASITQELTEIVSGAAAV  286 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhC
Confidence            9999999999999999999999996
>2qe7_G ATP synthase subunit gamma; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} Back     alignment and structure
>2xok_G ATP synthase subunit gamma, mitochondrial; hydrolase, ATP-binding, F(O), F(1), mitochondr inner membrane, transmembrane; HET: ANP; 3.01A {Saccharomyces cerevisiae} Back     alignment and structure
>3oee_G ATP synthase subunit gamma; ATP phosphatase, F1F0 ATPase, ATP synthesis, H ADP, PO4, mitochondria; HET: ANP; 2.74A {Saccharomyces cerevisiae} SCOP: c.49.2.0 PDB: 2wpd_G* 3fks_G 2hld_G* 3oeh_G* 3ofn_G* 3zry_G* 4b2q_G* 3oe7_G* Back     alignment and structure
>2ck3_G ATP synthase subunit gamma\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: c.49.2.1 PDB: 1cow_G* 1bmf_G* 1e1q_G* 1e1r_G* 1efr_G* 1e79_G* 1h8h_G* 1nbm_G* 1ohh_G* 1qo1_G 1w0j_G* 1w0k_G* 1h8e_G* 2jiz_G* 2jj1_G* 2jj2_G* 2v7q_G* 2wss_G* 2xnd_G* 2w6j_G ... Back     alignment and structure
>1fs0_G ATP synthase gamma subunit; coiled coil, epsilon, hydrolase; 2.10A {Escherichia coli} SCOP: c.49.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 265
d1fs0g_230 c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subu 5e-45
d2jdig1272 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma 2e-43
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Length = 230 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Escherichia coli [TaxId: 562]

 Score =  149 bits (376), Expect = 5e-45
 Identities = 83/226 (36%), Positives = 141/226 (62%), Gaps = 3/226 (1%)

Query: 1   MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTD 60
           MV+ASKMRK+Q+RM A+RPY+  ++++I +L   + E ++ + + ++ +KRV  ++++TD
Sbjct: 8   MVAASKMRKSQDRMAASRPYAETMRKVIGHLAHGNLEYKHPYLEDRD-VKRVGYLVVSTD 66

Query: 61  KGLCGSINSNIFRILIKKINELESKGNFIDFFVIGQKGLNFLNEINIKTKLCITQIGDIL 120
           +GLCG +N N+F+ L+ ++     KG   D  +IG KG++F N +       +T +GD  
Sbjct: 67  RGLCGGLNINLFKKLLAEMKTWTDKGVQCDLAMIGSKGVSFFNSVGGNVVAQVTGMGDNP 126

Query: 121 YFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQKATISKLLPFSDKYLTFPIKNKY 180
             ++L   +K++++ Y    +D +YI+  KFINT+ Q  TIS+LLP              
Sbjct: 127 SLSELIGPVKVMLQAYDEGRLDKLYIVSNKFINTMSQVPTISQLLPLPASD--DDDLKHK 184

Query: 181 SSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMK 226
           S  Y+YE +   L++ L  RY+E+ +YQ + EN+ASEQ +RM+AMK
Sbjct: 185 SWDYLYEPDPKALLDTLLRRYVESQVYQGVVENLASEQAARMVAMK 230
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Length = 272 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query265
d2jdig1272 ATP synthase (F1-ATPase), gamma subunit {Cow (Bos 100.0
d1fs0g_230 ATP synthase (F1-ATPase), gamma subunit {Escherich 100.0
>d2jdig1 c.49.2.1 (G:1-272) ATP synthase (F1-ATPase), gamma subunit {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: ATP synthase (F1-ATPase), gamma subunit
family: ATP synthase (F1-ATPase), gamma subunit
domain: ATP synthase (F1-ATPase), gamma subunit
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-69  Score=471.85  Aligned_cols=246  Identities=28%  Similarity=0.402  Sum_probs=147.3

Q ss_pred             CcchhhhhhhhhcccccCCccchhhHHHHHhhhhhhccccccccccccceeEEEEEEecCCccccccchhHHHHHHHhhh
Q psy2900           1 MVSASKMRKTQNRMHAARPYSVNIKRIICNLLQTHFECRNLFFKKKNRIKRVAIILITTDKGLCGSINSNIFRILIKKIN   80 (265)
Q Consensus         1 mVAaaKlrka~~~~~~~r~Y~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~IvitSDrGLCG~fN~~v~k~~~~~i~   80 (265)
                      ||||||+||||++++..|||+.....++.+.          .+..+++.+++++||||||||||||||++|+|.+.+.+.
T Consensus        25 mVAasKlrkaq~~~~~~r~Y~~~~~~~~~~~----------~~~~~~~~~~~l~IvitSDrGLcG~fN~~iik~~~~~i~   94 (272)
T d2jdig1          25 MVAAAKYARAERELKPARVYGVGSLALYEKA----------DIKTPEDKKKHLIIGVSSDRGLCGAIHSSVAKQMKSEAA   94 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTC-----------------------------CCCCBCCSCCCSTTHHHHHC--------
T ss_pred             HHHHHHHHHHHHHHHhcCchHHHhHHhhccc----------cchhccccccceeEEEecCCCCCCCccccHHHHHHHHHH
Confidence            7999999999999999999997766554432          222223467789999999999999999999999999998


Q ss_pred             hhhccCCeeeEEEeccccccccccc-ccccceeeeeecce-eeehhhhHHHHHHHHhhhcccceeeeehhhHHHHhhhhh
Q psy2900          81 ELESKGNFIDFFVIGQKGLNFLNEI-NIKTKLCITQIGDI-LYFNKLTNLIKILVKDYKNNLIDSIYIIYTKFINTLQQK  158 (265)
Q Consensus        81 ~~~~~~~~~~l~~iG~K~~~~~~~~-~~~i~~~~~~~~~~-~~~~~~~~i~~~l~~~~~~~~~d~v~ivy~~f~s~~~~~  158 (265)
                      +....+.++.++++|+||.+++.+. +..+...+...++. +++.++..+...+..  ..+++|+++|+||+|+|.++|+
T Consensus        95 ~~~~~~~~~~l~~~G~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~d~v~i~y~~f~~~~~q~  172 (272)
T d2jdig1          95 NLAAAGKEVKIIGVGDKIRSILHRTHSDQFLVTFKEVGRRPPTFGDASVIALELLN--SGYEFDEGSIIFNRFRSVISYK  172 (272)
T ss_dssp             ----------CCCBSHHHHHHC----------CBCSCSSSCCCHHHHHHHHHHC------------CCCCCEECSSSCEE
T ss_pred             HhhccCCceEEEecccchhhhhhhcccceeeeeeeecCCCCchhHHHHHHHHHHHH--hhhhcceeEEEeeccccccccc
Confidence            8777777788999999999999764 55566666666544 667766655444433  2468999999999999999999


Q ss_pred             hhhhcccccCCceeeeeccccceeeEEEechhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhhcccccchhhhhh
Q psy2900         159 ATISKLLPFSDKYLTFPIKNKYSSYYIYETNILVLINKLFIRYIEALIYQSISENIASEQVSRMIAMKSASENADYIIDE  238 (265)
Q Consensus       159 ~~~~~llP~~~~~~~~~~~~~~~~~~~~ep~~~~~l~~l~~~yl~~~ly~al~es~asE~~aRm~AM~~At~Na~e~i~~  238 (265)
                      |..++++|++...       .....+.|+|+++++|+.|+|.|+.+.||+|++||+||||+|||+||++|||||+||+++
T Consensus       173 p~~~~l~p~~~~~-------~~~~~~~~~~~~~~vl~~l~~~yl~~~ly~a~~es~aSE~aaRm~AM~~At~Na~eli~~  245 (272)
T d2jdig1         173 TEEKPIFSLDTIS-------SAESMSIYDDIDADVLRNYQEYSLANIIYYSLKESTTSEQSARMTAMDNASKNASEMIDK  245 (272)
T ss_dssp             CC---------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeccccccccc-------ccchhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            9999999986431       123467899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhhcccchhhhHHHhhhccCCcCC
Q psy2900         239 LKLIYNKTRQATITKELSEIISGSSVV  265 (265)
Q Consensus       239 L~~~yNk~RQ~~IT~El~EIv~Ga~al  265 (265)
                      |+++|||+||++||+||+|||+|||||
T Consensus       246 L~~~yNr~RQ~~IT~El~EIv~GaeAl  272 (272)
T d2jdig1         246 LTLTFNRTRQAVITKELIEIISGAAAL  272 (272)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999997
>d1fs0g_ c.49.2.1 (G:) ATP synthase (F1-ATPase), gamma subunit {Escherichia coli [TaxId: 562]} Back     information, alignment and structure