Psyllid ID: psy2902
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 945 | 2.2.26 [Sep-21-2011] | |||||||
| A4G8D2 | 649 | Chaperone protein DnaK OS | yes | N/A | 0.583 | 0.848 | 0.872 | 0.0 | |
| A6T226 | 650 | Chaperone protein DnaK OS | yes | N/A | 0.583 | 0.847 | 0.876 | 0.0 | |
| Q0K757 | 650 | Chaperone protein DnaK OS | yes | N/A | 0.583 | 0.847 | 0.825 | 0.0 | |
| A9IGC3 | 640 | Chaperone protein DnaK OS | yes | N/A | 0.598 | 0.884 | 0.802 | 0.0 | |
| B2UBP3 | 650 | Chaperone protein DnaK OS | yes | N/A | 0.583 | 0.847 | 0.827 | 0.0 | |
| B3R6G7 | 647 | Chaperone protein DnaK OS | yes | N/A | 0.583 | 0.851 | 0.823 | 0.0 | |
| Q8XW40 | 652 | Chaperone protein DnaK OS | yes | N/A | 0.583 | 0.845 | 0.827 | 0.0 | |
| Q145F1 | 653 | Chaperone protein DnaK OS | yes | N/A | 0.583 | 0.843 | 0.829 | 0.0 | |
| Q7WGI4 | 641 | Chaperone protein DnaK OS | yes | N/A | 0.598 | 0.882 | 0.801 | 0.0 | |
| Q2KWA2 | 644 | Chaperone protein DnaK OS | yes | N/A | 0.583 | 0.855 | 0.818 | 0.0 |
| >sp|A4G8D2|DNAK_HERAR Chaperone protein DnaK OS=Herminiimonas arsenicoxydans GN=dnaK PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/551 (87%), Positives = 524/551 (95%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I+EG +PKVIENSEGARTTPSVIAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF+EKEVQKDI +MPY+IVKADNGDAWISVR KKLAPPQISAE L
Sbjct: 61 NPKNTLYAVKRLIGRKFDEKEVQKDIGMMPYQIVKADNGDAWISVRDKKLAPPQISAETL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+GK DR I VYDLGGGTFD+SIIEIADVDGE QFEVLSTNGDTFLGGEDFDQR+IDY
Sbjct: 181 LDKTGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRVIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHL +K
Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLTMK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI++T+ P IAIKDAG+KVSDI+DIILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 ITRAKLESLVEELISKTLAPLSIAIKDAGVKVSDIDDIILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIET+GG+MTKMI+KNTTIP
Sbjct: 361 EPRKDVNPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KV+QGEREM GNK LGEFNLEGIPP+ RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGLTEEEI+KMVQ AEANAEEDKRL+E+AE+ NHG
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLKEVAEAHNHG 540
Query: 610 ESLIHSTKKSL 620
++L+HST+KSL
Sbjct: 541 DALVHSTRKSL 551
|
Acts as a chaperone. Herminiimonas arsenicoxydans (taxid: 204773) |
| >sp|A6T226|DNAK_JANMA Chaperone protein DnaK OS=Janthinobacterium sp. (strain Marseille) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/551 (87%), Positives = 523/551 (94%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I+EG +PKVIENSEGARTTPSVIAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF+EKEVQKDI +MPY+IVKADNGDAWISVR KKLA QISAE+L
Sbjct: 61 NPKNTLYAVKRLIGRKFDEKEVQKDIGMMPYQIVKADNGDAWISVRDKKLAAQQISAEIL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK GK DR I VYDLGGGTFD+SIIEIADVDGE QFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKGGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI++TIEPCR AIKDAG+KVSDI+DIILVGGMTRMPKVQE VK+FFGK
Sbjct: 301 ITRAKLESLVEELISKTIEPCRTAIKDAGVKVSDIDDIILVGGMTRMPKVQETVKDFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPR+D+NPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIET+GG+MTKMI+KNTTIP
Sbjct: 361 DPRKDVNPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KV+QGEREM GNK LGEFNLEGIPP+ RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGLTEEEI+KMVQ AEANAEEDKRL+ELAE+ N G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLKELAEAHNQG 540
Query: 610 ESLIHSTKKSL 620
++L+HST+K+L
Sbjct: 541 DALVHSTRKAL 551
|
Acts as a chaperone. Janthinobacterium sp. (strain Marseille) (taxid: 375286) |
| >sp|Q0K757|DNAK_CUPNH Chaperone protein DnaK OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/551 (82%), Positives = 508/551 (92%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I+EG+ PKVIENSEGARTTPS+IAY E+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAILEGNTPKVIENSEGARTTPSIIAYMEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT+YA KRLIGRKF EKEVQKDI LMPY IVKADNGDAW+SVR +KLAPPQ+SAEVL
Sbjct: 61 NPRNTLYAVKRLIGRKFEEKEVQKDIGLMPYSIVKADNGDAWVSVRDQKLAPPQVSAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG +TEAVITVPAYFND+QRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
+DK+ K DR I VYDLGGGTFD+SIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 MDKNEKGDRKIAVYDLGGGTFDISIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+ EF K G+DL KD +ALQR+K +AE+AKIELSSS+QTEIN PYI P HLNLK
Sbjct: 241 IISEFKKDQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV+ELITRTIEPCRIAIKDAG+KVSDI+D+ILVGGMTRMPKVQE+VKEFFGK
Sbjct: 301 MTRAKLESLVEELITRTIEPCRIAIKDAGVKVSDIDDVILVGGMTRMPKVQEQVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+ R+D+NPDEAVAVGAAIQGSVLSGDR D+LLLDVTPLSLGIET+GG+MTKMI KNTTIP
Sbjct: 361 EARKDVNPDEAVAVGAAIQGSVLSGDRTDVLLLDVTPLSLGIETLGGVMTKMITKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK +QVFSTA+DNQPAVT+KV+QGEREM SGNK+LGEFNLEGIPPA RG PQIEV+FDID
Sbjct: 421 TKHAQVFSTADDNQPAVTIKVFQGEREMASGNKLLGEFNLEGIPPAARGTPQIEVSFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKEN+ITIKANSGL+E+EI++MV+ AEANAEEDK+ RELA++RN
Sbjct: 481 ANGILHVGAKDKATGKENRITIKANSGLSEDEIQRMVKDAEANAEEDKKARELADARNQA 540
Query: 610 ESLIHSTKKSL 620
++LIHSTKK+L
Sbjct: 541 DALIHSTKKAL 551
|
Acts as a chaperone. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) |
| >sp|A9IGC3|DNAK_BORPD Chaperone protein DnaK OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 948 bits (2450), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/568 (80%), Positives = 515/568 (90%), Gaps = 2/568 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
MSKIIGIDLGTTNSCV++++G Q K+IEN+EGARTTPS++AY ++GE LVGAPAKRQAVT
Sbjct: 1 MSKIIGIDLGTTNSCVAVMDGGQVKIIENAEGARTTPSIVAYMDDGETLVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF+EK VQKDI LMPY IVKADNGDAW+ RGKK+APPQ+SA+VL
Sbjct: 61 NPKNTLYAVKRLIGRKFDEKAVQKDIDLMPYSIVKADNGDAWVEARGKKIAPPQVSADVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFND+QRQATKDAGRIAGLEVKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDKS K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKSEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+ EF K G+DL KD +ALQR+K +AE+AKIELSSS+QTEIN PYI P HLNLK
Sbjct: 241 IIGEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI RTI+PCR+AIKDAG+KVS+I+D+ILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 ITRAKLEALVEELIERTIDPCRVAIKDAGVKVSEIDDVILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPR+D+NPDEAVA GAAIQGSVLSGDRKD+LLLDVTPLSLGIET+GG+MTKMI+KNTTIP
Sbjct: 361 DPRKDVNPDEAVAAGAAIQGSVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
T+FSQ FSTA+DNQPAVT+KV+QGERE+ +GNK LGEFNLEGIPPA RG+PQIEVTFDID
Sbjct: 421 TRFSQTFSTADDNQPAVTIKVFQGEREIAAGNKSLGEFNLEGIPPAPRGLPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV+AKDK TGKENKITIKANSGL+E+EI++MV+ AEANAEED R+ ELA++RN
Sbjct: 481 ANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMVKDAEANAEEDHRIAELAQTRNQA 540
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
++L+H+T+KSL E E L SEK I
Sbjct: 541 DALVHATRKSL--TEYGEKLEASEKEAI 566
|
Acts as a chaperone. Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) (taxid: 340100) |
| >sp|B2UBP3|DNAK_RALPJ Chaperone protein DnaK OS=Ralstonia pickettii (strain 12J) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/551 (82%), Positives = 504/551 (91%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I+EG+ PKVIEN+EGARTTPS+IAY E+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMEGNTPKVIENAEGARTTPSIIAYMEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF EKEVQKDI LMPY IVKADNGDAW+ VRG+KLAPPQISAE L
Sbjct: 61 NPKNTLYAVKRLIGRKFEEKEVQKDIGLMPYSIVKADNGDAWVEVRGQKLAPPQISAETL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFND+QRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFD+SIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKNEKGDRKIAVYDLGGGTFDISIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+ EF K G+DL KD +ALQR+K +AE+AKIELSS++QTEIN PYI P HLNLK
Sbjct: 241 IIGEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSTQQTEINLPYITADASGPKHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV++LI RTI+PCR AIKDAG+KVSDI+D+ILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 ITRAKLEALVEDLIARTIDPCRTAIKDAGVKVSDIHDVILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+ R+D+NPDEAVAVGAAIQG VL GDR D+LLLDVTPLSLGIET+GG+MTKMI KNTTIP
Sbjct: 361 EARKDVNPDEAVAVGAAIQGQVLGGDRTDVLLLDVTPLSLGIETLGGVMTKMIGKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQ FSTA+DNQPAVT+KVYQGEREM SGNK+LGEFNLEGIPPA RG PQIEV+FDID
Sbjct: 421 TKFSQTFSTADDNQPAVTIKVYQGEREMASGNKMLGEFNLEGIPPAPRGTPQIEVSFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKA+SGL+E EI++MV+ AEANAEEDK+LREL +SRN G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKASSGLSEAEIERMVKDAEANAEEDKKLRELVDSRNQG 540
Query: 610 ESLIHSTKKSL 620
E+L+HSTKK+L
Sbjct: 541 EALVHSTKKAL 551
|
Acts as a chaperone. Ralstonia pickettii (strain 12J) (taxid: 402626) |
| >sp|B3R6G7|DNAK_CUPTR Chaperone protein DnaK OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 454/551 (82%), Positives = 508/551 (92%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I+EG+ PKVIENSEGARTTPS+IAY E+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAILEGNTPKVIENSEGARTTPSIIAYMEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT+YA KRLIGRKF EKEVQKDI LMPY IVKADNGDAW+SVR +KLAPPQ+SAEVL
Sbjct: 61 NPRNTLYAVKRLIGRKFEEKEVQKDIGLMPYSIVKADNGDAWVSVRDQKLAPPQVSAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG +TEAVITVPAYFND+QRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFD+SIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKNEKGDRKIAVYDLGGGTFDISIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+ EF K G+DL KD +ALQR+K +AE+AKIELSSS+QTEIN PYI P HLNLK
Sbjct: 241 IIGEFKKDQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV+ELITRTIEPCR AIKDAG+KVSDI+D+ILVGGMTRMPKVQE+VKEFFGK
Sbjct: 301 MTRAKLESLVEELITRTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVQEQVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+ R+D+NPDEAVAVGAAIQGSVLSGDRKD+LLLDVTPLSLGIET+GG+MTKMI KNTTIP
Sbjct: 361 EARKDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMITKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK +QVFSTA+DNQPAVT+KVYQGEREM +GNK+LGEFNLEGIPPA RG PQIEV+FDID
Sbjct: 421 TKHAQVFSTADDNQPAVTIKVYQGEREMATGNKLLGEFNLEGIPPAPRGTPQIEVSFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKEN+ITIKANSGL+E+EI++MV+ AEANAEEDK+ RELA++RN
Sbjct: 481 ANGILHVGAKDKATGKENRITIKANSGLSEDEIQRMVKDAEANAEEDKKARELADARNQA 540
Query: 610 ESLIHSTKKSL 620
++LIHST+K++
Sbjct: 541 DALIHSTRKAV 551
|
Acts as a chaperone. Cupriavidus taiwanensis (strain R1 / LMG 19424) (taxid: 164546) |
| >sp|Q8XW40|DNAK_RALSO Chaperone protein DnaK OS=Ralstonia solanacearum (strain GMI1000) GN=dnaK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/551 (82%), Positives = 505/551 (91%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCVSI+EG+ PKVIEN+EGARTTPS+IAY E+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVSIMEGNTPKVIENAEGARTTPSIIAYMEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT+YA KRLIGRKF EKEVQKDI LMPY I KADNGDAW+ VR KK+APPQISAEVL
Sbjct: 61 NPRNTLYAVKRLIGRKFEEKEVQKDIGLMPYTISKADNGDAWVEVRDKKMAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFND+QRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFD+SIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKNEKGDRKIAVYDLGGGTFDISIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+ EF K +G+DL KD +ALQR+K +AE+AKIELSS++QTEIN PYI P HLNLK
Sbjct: 241 IIGEFKKESGVDLSKDVLALQRLKDAAEKAKIELSSTQQTEINLPYITADASGPKHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV++LI RTIEPCR AIKDAG+KVSDI+D+ILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 ITRAKLEALVEDLIARTIEPCRTAIKDAGVKVSDIHDVILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+ R+D+NPDEAVAVGAAIQG VL GDRKD+LLLDVTPLSLGIET+GG+MTKMI KNTTIP
Sbjct: 361 EARKDVNPDEAVAVGAAIQGQVLGGDRKDVLLLDVTPLSLGIETLGGVMTKMIGKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQ FSTA+DNQPAVT+KVYQGEREM SGNK+LGEFNLEGIPPA RG PQIEV+FDID
Sbjct: 421 TKFSQTFSTADDNQPAVTIKVYQGEREMASGNKMLGEFNLEGIPPAPRGTPQIEVSFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKA+SGL+E EI++MV+ AEANAEEDK+LREL +SRN G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKASSGLSEAEIERMVKDAEANAEEDKKLRELVDSRNQG 540
Query: 610 ESLIHSTKKSL 620
E+L+HST+K+L
Sbjct: 541 EALVHSTRKAL 551
|
Acts as a chaperone. Ralstonia solanacearum (strain GMI1000) (taxid: 267608) |
| >sp|Q145F1|DNAK_BURXL Chaperone protein DnaK OS=Burkholderia xenovorans (strain LB400) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 457/551 (82%), Positives = 505/551 (91%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I+EG+ KVIENSEGARTTPS+IAY E+GEILVGAPAKRQ+VT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMEGNSVKVIENSEGARTTPSIIAYMEDGEILVGAPAKRQSVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGR+F EKEVQKDI LMPYKI+KADNGDAW+ VR +KLAPPQISAEVL
Sbjct: 61 NPKNTLYAVKRLIGRRFEEKEVQKDIGLMPYKIIKADNGDAWVEVRDQKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG +TEAVITVPAYFND+QRQATKDAGRIAGLEVKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKNEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+ EF K G+DL KD +ALQR+K SAE+AKIELSSS+QTEIN PYI P HLNLK
Sbjct: 241 IIGEFKKEQGVDLSKDVLALQRLKESAEKAKIELSSSQQTEINLPYITADASGPKHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI RTIEPCR+AIKDAG+KV +I+D+ILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 ITRAKLEALVEELIERTIEPCRVAIKDAGVKVGEIDDVILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPRRD+NPDEAVAVGAAIQG VLSGDRKD+LLLDVTPLSLGIET+GG+MTKMI KNTTIP
Sbjct: 361 DPRRDVNPDEAVAVGAAIQGQVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMINKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK SQV+STA+DNQ AVT+KV+QGEREM +GNK+LGEFNLEGIPPA RG PQIEV+FDID
Sbjct: 421 TKHSQVYSTADDNQGAVTIKVFQGEREMAAGNKLLGEFNLEGIPPAPRGTPQIEVSFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKEN+ITIKANSGL+E EI+KMV+ AEANAEED +LRELA++RN G
Sbjct: 481 ANGILHVGAKDKATGKENRITIKANSGLSEAEIEKMVKDAEANAEEDHKLRELADARNQG 540
Query: 610 ESLIHSTKKSL 620
++L+HSTKK+L
Sbjct: 541 DALVHSTKKAL 551
|
Acts as a chaperone. Burkholderia xenovorans (strain LB400) (taxid: 266265) |
| >sp|Q7WGI4|DNAK_BORBR Chaperone protein DnaK OS=Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 945 bits (2443), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/568 (80%), Positives = 516/568 (90%), Gaps = 2/568 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
MSKIIGIDLGTTNSCV++++G Q K+IEN+EGARTTPS++AY ++GE LVGAPAKRQAVT
Sbjct: 1 MSKIIGIDLGTTNSCVAVLDGGQVKIIENAEGARTTPSIVAYMDDGETLVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF+EK VQKDI LMPY IVKADNGDAW+ VRGKKLAPPQ+SAEVL
Sbjct: 61 NPKNTLYAVKRLIGRKFDEKAVQKDIDLMPYSIVKADNGDAWVEVRGKKLAPPQVSAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFND+QRQATKDAGRIAGLEVKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR IVVYDLGGGTFDVSIIEIADVDGE QFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKTEKGDRKIVVYDLGGGTFDVSIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+ EF K G+DL KD +ALQR+K +AE+AKIELSSS+QTEIN PYI P HLNLK
Sbjct: 241 IISEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI RTIEPCR+AIKDAG+KVSDI+D+ILVGGMTRMPKVQ+KVKEFFG+
Sbjct: 301 ITRAKLEALVEELIERTIEPCRVAIKDAGVKVSDIDDVILVGGMTRMPKVQDKVKEFFGR 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVA GAAIQGSVLSG+RKD+LLLDVTPLSLGIET+GG+MTKMI+KNTTIP
Sbjct: 361 EPRKDVNPDEAVAAGAAIQGSVLSGERKDVLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
T++SQ FSTA+DNQPAVT+KV+QGERE+ +GNK LGEFNLEGIPPA RG+PQIEVTFDID
Sbjct: 421 TRYSQTFSTADDNQPAVTIKVFQGEREIAAGNKGLGEFNLEGIPPAPRGLPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV+AKDK TGKENKITIKANSGL+E+EI++MV+ AEANAEED RL ELA++RN
Sbjct: 481 ANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMVKDAEANAEEDHRLAELAQARNQA 540
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
++L+H+T+KSL E E L +EK I
Sbjct: 541 DALVHATRKSL--TEYGEKLEAAEKESI 566
|
Acts as a chaperone. Bordetella bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50) (taxid: 257310) |
| >sp|Q2KWA2|DNAK_BORA1 Chaperone protein DnaK OS=Bordetella avium (strain 197N) GN=dnaK PE=3 SV=1 | Back alignment and function description |
|---|
Score = 944 bits (2440), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/551 (81%), Positives = 506/551 (91%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
MSKIIGIDLGTTNSCV++++G Q K+IEN+EGARTTPS++AY E+GEILVGAPAKRQAVT
Sbjct: 1 MSKIIGIDLGTTNSCVAVMDGGQVKIIENAEGARTTPSIVAYMEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF+EK VQKDI LMPY I KADNGDAW+ VRG KLAPPQ+SAEVL
Sbjct: 61 NPKNTLYAVKRLIGRKFDEKAVQKDIHLMPYTITKADNGDAWVEVRGSKLAPPQVSAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG +TEAVITVPAYFND+QRQATKDAGRIAGLEVKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKTEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+ EF K G+DL KD +ALQR+K +AE+AKIELSSS+QTEIN PYI P HLNLK
Sbjct: 241 IIGEFKKEQGVDLSKDVLALQRLKEAAEKAKIELSSSQQTEINLPYITADASGPKHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI RTIEPCR+AIKDAG+KVSDI+D+ILVGGMTRMPKVQEKVKEFFG+
Sbjct: 301 ITRAKLESLVEELIERTIEPCRVAIKDAGVKVSDIDDVILVGGMTRMPKVQEKVKEFFGR 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVA GAAIQGSVLSGDRKD+LLLDVTPLSLGIET+GG+MTKMI+KNTTIP
Sbjct: 361 EPRKDVNPDEAVAAGAAIQGSVLSGDRKDVLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
T+FSQ FSTA+DNQPAVT+KV+QGERE+ +GNK LGEFNLEGIPPA RG+PQIEVTFDID
Sbjct: 421 TRFSQTFSTADDNQPAVTIKVFQGEREIAAGNKALGEFNLEGIPPAPRGLPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV+AKDK TGKENKITIKANSGL+E+EI++MV+ AEANAEED RL ELA +RN
Sbjct: 481 ANGILHVSAKDKGTGKENKITIKANSGLSEDEIQRMVKDAEANAEEDHRLAELALARNQA 540
Query: 610 ESLIHSTKKSL 620
++L+H+T+KSL
Sbjct: 541 DALVHATRKSL 551
|
Acts as a chaperone. Bordetella avium (strain 197N) (taxid: 360910) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 945 | ||||||
| 409404492 | 647 | molecular chaperone protein [Herbaspiril | 0.598 | 0.874 | 0.873 | 0.0 | |
| 399020022 | 645 | chaperone protein DnaK [Herbaspirillum s | 0.583 | 0.854 | 0.887 | 0.0 | |
| 300309950 | 646 | molecular chaperone protein [Herbaspiril | 0.583 | 0.852 | 0.889 | 0.0 | |
| 415913848 | 606 | Chaperone protein, partial [Herbaspirill | 0.598 | 0.933 | 0.867 | 0.0 | |
| 194373341 | 646 | chaperone protein dnaK (Heat shock prote | 0.583 | 0.852 | 0.889 | 0.0 | |
| 340789029 | 644 | molecular chaperone DnaK [Collimonas fun | 0.583 | 0.855 | 0.882 | 0.0 | |
| 134095815 | 649 | molecular chaperone DnaK [Herminiimonas | 0.583 | 0.848 | 0.872 | 0.0 | |
| 152980512 | 650 | molecular chaperone DnaK [Janthinobacter | 0.583 | 0.847 | 0.876 | 0.0 | |
| 398836455 | 648 | chaperone protein DnaK [Herbaspirillum s | 0.598 | 0.873 | 0.862 | 0.0 | |
| 395764154 | 647 | molecular chaperone DnaK [Janthinobacter | 0.583 | 0.851 | 0.871 | 0.0 |
| >gi|409404492|ref|ZP_11252971.1| molecular chaperone protein [Herbaspirillum sp. GW103] gi|386436011|gb|EIJ48834.1| molecular chaperone protein [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2613), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 496/568 (87%), Positives = 533/568 (93%), Gaps = 2/568 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCVS++EG+QPKVIENSEGARTTPS+IAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVSVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNTIYAAKRLIGRKF EKEVQKDI+LMPY+IV ADNGDAWI VR KKLAPPQISAEVL
Sbjct: 61 NPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR+IDY
Sbjct: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI++TIEPCR AIKDAG+KVSDI+D+ILVGGMTRMPKV EKVKEFFGK
Sbjct: 301 ITRAKLESLVEELISKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPRRD+NPDEAVAVGAAIQGSVLSGDRKD+LLLDVTPLSLGIETMGG+MTKMIKKNTTIP
Sbjct: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KVYQGEREM GNK LGEFNLEGIPPA RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGL EEEI+KMV+ AEANAEEDKRL+ELAE+RN G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETRNQG 540
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
++L+HSTKK+L E + L EK +I
Sbjct: 541 DALVHSTKKAL--GEYGDKLEGGEKEVI 566
|
Source: Herbaspirillum sp. GW103 Species: Herbaspirillum sp. GW103 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|399020022|ref|ZP_10722163.1| chaperone protein DnaK [Herbaspirillum sp. CF444] gi|398096395|gb|EJL86719.1| chaperone protein DnaK [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 1010 bits (2611), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/551 (88%), Positives = 528/551 (95%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCVS++EG QPKVIENSEGARTTPS+IAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVSVMEGGQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNTIYAAKRLIGRKF+EKEVQKDISLMPY+IVKADNGDAWI VR KLAPPQISAEVL
Sbjct: 61 NPKNTIYAAKRLIGRKFDEKEVQKDISLMPYQIVKADNGDAWIGVRDNKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFND+QRQATKDAGRIAGLEVKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKTEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI +TIEPCR AIKDAG+KV+DI+DIILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVTDIDDIILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVAVGAAIQGSVLSG+RKDLLLLDVTPLSLGIETMGG+MTKMIKKNTTIP
Sbjct: 361 EPRKDVNPDEAVAVGAAIQGSVLSGERKDLLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KVYQGEREM +GNK LGEFNLEGIPP+ RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAAGNKGLGEFNLEGIPPSPRGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGL+E+EI+KMV+ AEANAEEDKRL+ELAE+RN G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLSEDEIEKMVRDAEANAEEDKRLKELAETRNQG 540
Query: 610 ESLIHSTKKSL 620
++L+HST+K+L
Sbjct: 541 DALVHSTRKAL 551
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|300309950|ref|YP_003774042.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] gi|300072735|gb|ADJ62134.1| molecular chaperone protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/551 (88%), Positives = 525/551 (95%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+++EG+QPKVIENSEGARTTPS+IAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNTIYAAKRLIGRKF EKEVQKDI+LMPY+IV ADNGDAWI VR KKLAPPQISAEVL
Sbjct: 61 NPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR+IDY
Sbjct: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI +TIEPCR AIKDAG+KVSDI+D+ILVGGMTRMPKV EKVKEFFGK
Sbjct: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPRRD+NPDEAVAVGAAIQGSVLSGDRKD+LLLDVTPLSLGIETMGG+MTKMIKKNTTIP
Sbjct: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KVYQGEREM GNK LGEFNLEGIPPA RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGL EEEI+KMV+ AEANAEEDKRL+ELAE+RN G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETRNQG 540
Query: 610 ESLIHSTKKSL 620
++L+HSTKK+L
Sbjct: 541 DALVHSTKKAL 551
|
Source: Herbaspirillum seropedicae SmR1 Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|415913848|ref|ZP_11553688.1| Chaperone protein, partial [Herbaspirillum frisingense GSF30] gi|407761900|gb|EKF70864.1| Chaperone protein, partial [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
Score = 1008 bits (2607), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/568 (86%), Positives = 533/568 (93%), Gaps = 2/568 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCVS++EG+QPKVIENSEGARTTPS+IAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVSVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NTIYA+KRLIGRKF EKEVQKDI+LMPY+IV ADNGDAWI VR KKLAPPQISAEVL
Sbjct: 61 NPRNTIYASKRLIGRKFTEKEVQKDINLMPYEIVAADNGDAWIGVRDKKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR+IDY
Sbjct: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I++EF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIEEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI +TIEPCR AIKDAG+KVSDI+D+ILVGGMTRMPKV EKVKEFFGK
Sbjct: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPRRD+NPDEAVAVGAAIQGSVLSGDRKD+LLLDVTPLSLGIETMGG+MTKMIKKNTTIP
Sbjct: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KVYQGEREM GNK LGEFNLEGIPPA RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKALGEFNLEGIPPAPRGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGL EEEI+KMV+ AEANAEEDKRL+ELAE+RN G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETRNQG 540
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
++L+HST+K+L E + L D EK +I
Sbjct: 541 DALVHSTRKAL--GEYGDKLEDGEKEVI 566
|
Source: Herbaspirillum frisingense GSF30 Species: Herbaspirillum frisingense Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|194373341|emb|CAM32534.2| chaperone protein dnaK (Heat shock protein 70) [Herbaspirillum seropedicae] | Back alignment and taxonomy information |
|---|
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/551 (88%), Positives = 525/551 (95%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+++EG+QPKVIENSEGARTTPS+IAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGNQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNTIYAAKRLIGRKF EKEVQKDI+LMPY+IV ADNGDAWI VR KKLAPPQISAEVL
Sbjct: 61 NPKNTIYAAKRLIGRKFTEKEVQKDINLMPYQIVAADNGDAWIGVRDKKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR+IDY
Sbjct: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI +TIEPCR AIKDAG+KVSDI+D+ILVGGMTRMPKV EKVKEFFGK
Sbjct: 301 ITRAKLESLVEELIAKTIEPCRTAIKDAGVKVSDIDDVILVGGMTRMPKVIEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPRRD+NPDEAVAVGAAIQGSVLSGDRKD+LLLDVTPLSLGIETMGG+MTKMIKKNTTIP
Sbjct: 361 DPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KVYQGEREM GNK LGEFNLEGIPPA RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAVGNKPLGEFNLEGIPPAPRGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGL EEEI+KMV+ AEANAEEDKRL+ELAE+RN G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLNEEEIEKMVRDAEANAEEDKRLKELAETRNQG 540
Query: 610 ESLIHSTKKSL 620
++L+HSTKK+L
Sbjct: 541 DALVHSTKKAL 551
|
Source: Herbaspirillum seropedicae Species: Herbaspirillum seropedicae Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|340789029|ref|YP_004754494.1| molecular chaperone DnaK [Collimonas fungivorans Ter331] gi|340554296|gb|AEK63671.1| Chaperone protein DnaK [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/551 (88%), Positives = 526/551 (95%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCVS+IE QPKVIENSEGARTTPS+IAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVSVIENGQPKVIENSEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP NT+YA KRLIGRKF+EKEVQKDI+LMPY+I+KADNGDAW+ VR +KLAPPQISAEVL
Sbjct: 61 NPTNTLYATKRLIGRKFDEKEVQKDIALMPYQIIKADNGDAWVGVRDQKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
ILDEF KINGIDL+KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAP+HLNLK
Sbjct: 241 ILDEFKKINGIDLKKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPIHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV+ELI +TIEPCRIAIKDAG+KVSDI+DIILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 MTRAKLESLVEELIAKTIEPCRIAIKDAGVKVSDIDDIILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGG+MTKMI+KNTTIP
Sbjct: 361 EPRKDVNPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGVMTKMIQKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KV+QGEREM +GNK LGEFNLEGIPPA RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVFQGEREMAAGNKGLGEFNLEGIPPASRGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGLTEEEI+KMV+ AEANAE+DKRL+E AE+ N G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVRDAEANAEDDKRLKEAAEAHNQG 540
Query: 610 ESLIHSTKKSL 620
++L+HSTKKSL
Sbjct: 541 DALVHSTKKSL 551
|
Source: Collimonas fungivorans Ter331 Species: Collimonas fungivorans Genus: Collimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134095815|ref|YP_001100890.1| molecular chaperone DnaK [Herminiimonas arsenicoxydans] gi|166918216|sp|A4G8D2.1|DNAK_HERAR RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70 gi|133739718|emb|CAL62769.1| Chaperone protein DnaK (Heat shock protein 70) (Heat shock 70 kDa protein) (HSP70) [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
Score = 1001 bits (2587), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/551 (87%), Positives = 524/551 (95%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I+EG +PKVIENSEGARTTPSVIAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF+EKEVQKDI +MPY+IVKADNGDAWISVR KKLAPPQISAE L
Sbjct: 61 NPKNTLYAVKRLIGRKFDEKEVQKDIGMMPYQIVKADNGDAWISVRDKKLAPPQISAETL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+GK DR I VYDLGGGTFD+SIIEIADVDGE QFEVLSTNGDTFLGGEDFDQR+IDY
Sbjct: 181 LDKTGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRVIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHL +K
Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLTMK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI++T+ P IAIKDAG+KVSDI+DIILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 ITRAKLESLVEELISKTLAPLSIAIKDAGVKVSDIDDIILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIET+GG+MTKMI+KNTTIP
Sbjct: 361 EPRKDVNPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KV+QGEREM GNK LGEFNLEGIPP+ RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGLTEEEI+KMVQ AEANAEEDKRL+E+AE+ NHG
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLKEVAEAHNHG 540
Query: 610 ESLIHSTKKSL 620
++L+HST+KSL
Sbjct: 541 DALVHSTRKSL 551
|
Source: Herminiimonas arsenicoxydans Species: Herminiimonas arsenicoxydans Genus: Herminiimonas Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|152980512|ref|YP_001354573.1| molecular chaperone DnaK [Janthinobacterium sp. Marseille] gi|166918217|sp|A6T226.1|DNAK_JANMA RecName: Full=Chaperone protein DnaK; AltName: Full=HSP70; AltName: Full=Heat shock 70 kDa protein; AltName: Full=Heat shock protein 70 gi|151280589|gb|ABR88999.1| molecular chaperone DnaK (Hsp70) [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
Score = 1000 bits (2585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 483/551 (87%), Positives = 523/551 (94%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I+EG +PKVIENSEGARTTPSVIAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF+EKEVQKDI +MPY+IVKADNGDAWISVR KKLA QISAE+L
Sbjct: 61 NPKNTLYAVKRLIGRKFDEKEVQKDIGMMPYQIVKADNGDAWISVRDKKLAAQQISAEIL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK GK DR I VYDLGGGTFD+SIIEIADVDGE QFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKGGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIDEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI++TIEPCR AIKDAG+KVSDI+DIILVGGMTRMPKVQE VK+FFGK
Sbjct: 301 ITRAKLESLVEELISKTIEPCRTAIKDAGVKVSDIDDIILVGGMTRMPKVQETVKDFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPR+D+NPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIET+GG+MTKMI+KNTTIP
Sbjct: 361 DPRKDVNPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETLGGVMTKMIQKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KV+QGEREM GNK LGEFNLEGIPP+ RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGLTEEEI+KMVQ AEANAEEDKRL+ELAE+ N G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLKELAEAHNQG 540
Query: 610 ESLIHSTKKSL 620
++L+HST+K+L
Sbjct: 541 DALVHSTRKAL 551
|
Source: Janthinobacterium sp. Marseille Species: Janthinobacterium sp. Marseille Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|398836455|ref|ZP_10593789.1| chaperone protein DnaK [Herbaspirillum sp. YR522] gi|398211568|gb|EJM98185.1| chaperone protein DnaK [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
Score = 999 bits (2582), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 490/568 (86%), Positives = 531/568 (93%), Gaps = 2/568 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCVS++EG+ PKVIENSEGARTTPS+IAYQE+GE+LVGAPAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVSVMEGNTPKVIENSEGARTTPSIIAYQEDGEVLVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNTIYAAKRLIGRKF+EK VQKDI LMPY+IVKADNGDAWI VR KKLAPPQISAEVL
Sbjct: 61 NPKNTIYAAKRLIGRKFDEKNVQKDIDLMPYQIVKADNGDAWIGVRDKKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFNDAQRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR+IDY
Sbjct: 181 LDKAEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRLIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I++EF KING+DL KD+IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIEEFKKINGLDLSKDAIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV+ELI +TIEPCRIAIKDAG+KV DI+D+ILVGGMTRMPKV EKVKEFFGK
Sbjct: 301 ITRAKLESLVEELINQTIEPCRIAIKDAGVKVFDIDDVILVGGMTRMPKVLEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PRRD+NPDEAVAVGAAIQGSVLSGDRKD+LLLDVTPLSLGIETMGG+MTKMIKKNTTIP
Sbjct: 361 EPRRDVNPDEAVAVGAAIQGSVLSGDRKDVLLLDVTPLSLGIETMGGVMTKMIKKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KVYQGEREM +GNK LGEFNLEGIPP+ RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVYQGEREMAAGNKGLGEFNLEGIPPSPRGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGL E+EI+KMV+ AE NAEEDKRLRE+AESRN G
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLNEDEIEKMVRDAEVNAEEDKRLREMAESRNQG 540
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
++L+HST+K+L E + L EK II
Sbjct: 541 DALVHSTRKAL--TEYGDKLEGGEKEII 566
|
Source: Herbaspirillum sp. YR522 Species: Herbaspirillum sp. YR522 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|395764154|ref|ZP_10444823.1| molecular chaperone DnaK [Janthinobacterium lividum PAMC 25724] | Back alignment and taxonomy information |
|---|
Score = 993 bits (2568), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/551 (87%), Positives = 523/551 (94%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M +IIGIDLGTTNSCVSI+E QPKVIEN+EGARTTPS+IAYQE+GEILVGAPAKRQAVT
Sbjct: 1 MGRIIGIDLGTTNSCVSIMENGQPKVIENAEGARTTPSIIAYQEDGEILVGAPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NPKNT+YA KRLIGRKF+EKEVQKDI+LMPY+I+KADNGDAWI VR KKLAPPQISAEVL
Sbjct: 61 NPKNTLYAVKRLIGRKFDEKEVQKDIALMPYQIMKADNGDAWIGVRDKKLAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RKMKKTAEDYLG E+TEAVITVPAYFND+QRQATKDAGRIAGL+VKRIINEPTAAALAFG
Sbjct: 121 RKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAFG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK+ K DR I VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY
Sbjct: 181 LDKTEKGDRKIAVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 240
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I+DEF KINGIDL+KD IALQRIKASAERAKIELSSS+QTEINEPYIAM+NGAPVHLNLK
Sbjct: 241 IIDEFKKINGIDLKKDPIALQRIKASAERAKIELSSSQQTEINEPYIAMANGAPVHLNLK 300
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV+ELI T+EPCRIAIKDAG+KVSDI+DIILVGGMTRMPKVQEKVKEFFGK
Sbjct: 301 MTRAKLESLVEELIIATMEPCRIAIKDAGVKVSDIDDIILVGGMTRMPKVQEKVKEFFGK 360
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
DPR+D+NPDEAVAVGAAIQGSVLSG+RKDLLLLDVTPLSLGIET+GG+MTKMI KNTTIP
Sbjct: 361 DPRKDVNPDEAVAVGAAIQGSVLSGERKDLLLLDVTPLSLGIETLGGVMTKMIHKNTTIP 420
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TKFSQVFSTA+DNQPAVT+KV+QGERE+ +GNK LGEFNLEGIPP+ RG PQIEVTFDID
Sbjct: 421 TKFSQVFSTADDNQPAVTIKVFQGEREIAAGNKGLGEFNLEGIPPSSRGTPQIEVTFDID 480
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGILHV AKDK TGKENKITIKANSGLTE EI+KMV+ AE NAEEDK+++ELAESRN
Sbjct: 481 ANGILHVGAKDKATGKENKITIKANSGLTEAEIQKMVKDAELNAEEDKKVKELAESRNQA 540
Query: 610 ESLIHSTKKSL 620
++L+HST+KSL
Sbjct: 541 DALVHSTRKSL 551
|
Source: Janthinobacterium lividum PAMC 25724 Species: Janthinobacterium lividum Genus: Janthinobacterium Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 945 | ||||||
| UNIPROTKB|P0A6Y8 | 638 | dnaK [Escherichia coli K-12 (t | 0.597 | 0.885 | 0.683 | 8.9e-212 | |
| UNIPROTKB|A1A766 | 638 | dnaK "Chaperone protein DnaK" | 0.597 | 0.885 | 0.683 | 8.9e-212 | |
| UNIPROTKB|O34241 | 635 | dnaK "Chaperone protein DnaK" | 0.593 | 0.883 | 0.681 | 2.5e-207 | |
| TIGR_CMR|VC_0855 | 635 | VC_0855 "dnaK protein" [Vibrio | 0.593 | 0.883 | 0.681 | 2.5e-207 | |
| TIGR_CMR|CBU_1290 | 656 | CBU_1290 "chaperone protein dn | 0.597 | 0.861 | 0.673 | 3.2e-207 | |
| TIGR_CMR|SO_1126 | 639 | SO_1126 "chaperone protein Dna | 0.615 | 0.910 | 0.642 | 4.4e-203 | |
| TIGR_CMR|CPS_3821 | 638 | CPS_3821 "chaperone protein Dn | 0.597 | 0.885 | 0.651 | 5.2e-200 | |
| TIGR_CMR|SPO_0043 | 637 | SPO_0043 "chaperone protein Dn | 0.576 | 0.855 | 0.663 | 3.7e-196 | |
| TIGR_CMR|CPS_1313 | 633 | CPS_1313 "chaperone protein Dn | 0.582 | 0.868 | 0.656 | 7e-196 | |
| TIGR_CMR|GSU_0033 | 636 | GSU_0033 "chaperone protein dn | 0.577 | 0.858 | 0.650 | 1.4e-190 |
| UNIPROTKB|P0A6Y8 dnaK [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 2047 (725.6 bits), Expect = 8.9e-212, P = 8.9e-212
Identities = 388/568 (68%), Positives = 482/568 (84%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I++G+ P+V+EN+EG RTTPS+IAY ++GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGR+F ++EVQ+D+S+MP+KI+ ADNGDAW+ V+G+K+APPQISAEVL
Sbjct: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAEDYLG +TEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G +R I VYDLGGGTFD+SIIEI +VDGEK FEVL+TNGDT LGGEDFD R+I+Y
Sbjct: 181 LDK-GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+++EF K GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K
Sbjct: 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++L+ R+IEP ++A++DAG+ VSDI+D+ILVGG TRMP VQ+KV EFFGK
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVA+GAA+QG VL+GD KD GIETMGG+MT +I KNTTIP
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIP 419
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK SQVFSTAEDNQ AVT+ V QGER+ + NK LG+FNL+GI PA RG+PQIEVTFDID
Sbjct: 420 TKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
A+GILHV+AKDK +GKE KITIKA+SGL E+EI+KMV+ AEANAE D++ EL ++RN G
Sbjct: 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQG 539
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ L+HST+K +++EA + L +K I
Sbjct: 540 DHLLHSTRK--QVEEAGDKLPADDKTAI 565
|
|
| UNIPROTKB|A1A766 dnaK "Chaperone protein DnaK" [Escherichia coli APEC O1 (taxid:405955)] | Back alignment and assigned GO terms |
|---|
Score = 2047 (725.6 bits), Expect = 8.9e-212, P = 8.9e-212
Identities = 388/568 (68%), Positives = 482/568 (84%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I++G+ P+V+EN+EG RTTPS+IAY ++GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGR+F ++EVQ+D+S+MP+KI+ ADNGDAW+ V+G+K+APPQISAEVL
Sbjct: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAEDYLG +TEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G +R I VYDLGGGTFD+SIIEI +VDGEK FEVL+TNGDT LGGEDFD R+I+Y
Sbjct: 181 LDK-GTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+++EF K GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K
Sbjct: 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++L+ R+IEP ++A++DAG+ VSDI+D+ILVGG TRMP VQ+KV EFFGK
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVA+GAA+QG VL+GD KD GIETMGG+MT +I KNTTIP
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIP 419
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK SQVFSTAEDNQ AVT+ V QGER+ + NK LG+FNL+GI PA RG+PQIEVTFDID
Sbjct: 420 TKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
A+GILHV+AKDK +GKE KITIKA+SGL E+EI+KMV+ AEANAE D++ EL ++RN G
Sbjct: 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQG 539
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ L+HST+K +++EA + L +K I
Sbjct: 540 DHLLHSTRK--QVEEAGDKLPADDKTAI 565
|
|
| UNIPROTKB|O34241 dnaK "Chaperone protein DnaK" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 2005 (710.9 bits), Expect = 2.5e-207, P = 2.5e-207
Identities = 385/565 (68%), Positives = 471/565 (83%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV++++G +P+VIEN+EG RTTPSVIAY + GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYTD-GETLVGQPAKRQAVT 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGR+F ++EVQ+DI +MPYKIVKADNGDAW+ +G+K+A PQ+SAEVL
Sbjct: 60 NPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVKADNGDAWVEAKGQKMAAPQVSAEVL 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAED+LG +T AVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 120 KKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 179
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G DR I VYDLGGGTFD+SIIEI +V+GEK FEVLSTNGDT LGGEDFD R+I+Y
Sbjct: 180 LDKQG-GDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINY 238
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
++DEF K GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K
Sbjct: 239 LVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 298
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++L+ R++EP ++A+ DA + V+DI D+ILVGG TRMP VQ+KV EFFGK
Sbjct: 299 VTRAKLEALVEDLVQRSLEPLKVALADADLSVNDITDVILVGGQTRMPMVQKKVAEFFGK 358
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVAVGAA+QG VL+G+ KD GIETMGG+MTK+I+KNTTIP
Sbjct: 359 EPRKDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIP 418
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK +QVFSTAEDNQ AVT+ V QGER+ NK LG+FNLEGI PA RG+PQIEV FD+D
Sbjct: 419 TKANQVFSTAEDNQSAVTIHVLQGERKQAMYNKSLGQFNLEGINPAPRGMPQIEVIFDLD 478
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
A+GILHV+AKDK+TGKE KITI+A+ GL++ EI+KMVQ AEAN E DK+ ELA +RN
Sbjct: 479 ADGILHVSAKDKQTGKEQKITIQASGGLSDAEIEKMVQEAEANKEADKKFEELATARNQA 538
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEK 634
+ +IH+T+K +I EA E L EK
Sbjct: 539 DQMIHATRK--QITEAGEALPADEK 561
|
|
| TIGR_CMR|VC_0855 VC_0855 "dnaK protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 2005 (710.9 bits), Expect = 2.5e-207, P = 2.5e-207
Identities = 385/565 (68%), Positives = 471/565 (83%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV++++G +P+VIEN+EG RTTPSVIAY + GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVLDGDKPRVIENAEGERTTPSVIAYTD-GETLVGQPAKRQAVT 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGR+F ++EVQ+DI +MPYKIVKADNGDAW+ +G+K+A PQ+SAEVL
Sbjct: 60 NPQNTLFAIKRLIGRRFEDEEVQRDIKIMPYKIVKADNGDAWVEAKGQKMAAPQVSAEVL 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAED+LG +T AVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 120 KKMKKTAEDFLGEPVTAAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 179
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G DR I VYDLGGGTFD+SIIEI +V+GEK FEVLSTNGDT LGGEDFD R+I+Y
Sbjct: 180 LDKQG-GDRTIAVYDLGGGTFDISIIEIDEVEGEKTFEVLSTNGDTHLGGEDFDNRMINY 238
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
++DEF K GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K
Sbjct: 239 LVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 298
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++L+ R++EP ++A+ DA + V+DI D+ILVGG TRMP VQ+KV EFFGK
Sbjct: 299 VTRAKLEALVEDLVQRSLEPLKVALADADLSVNDITDVILVGGQTRMPMVQKKVAEFFGK 358
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVAVGAA+QG VL+G+ KD GIETMGG+MTK+I+KNTTIP
Sbjct: 359 EPRKDVNPDEAVAVGAAVQGGVLAGEVKDVLLLDVTPLSLGIETMGGVMTKLIEKNTTIP 418
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK +QVFSTAEDNQ AVT+ V QGER+ NK LG+FNLEGI PA RG+PQIEV FD+D
Sbjct: 419 TKANQVFSTAEDNQSAVTIHVLQGERKQAMYNKSLGQFNLEGINPAPRGMPQIEVIFDLD 478
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
A+GILHV+AKDK+TGKE KITI+A+ GL++ EI+KMVQ AEAN E DK+ ELA +RN
Sbjct: 479 ADGILHVSAKDKQTGKEQKITIQASGGLSDAEIEKMVQEAEANKEADKKFEELATARNQA 538
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEK 634
+ +IH+T+K +I EA E L EK
Sbjct: 539 DQMIHATRK--QITEAGEALPADEK 561
|
|
| TIGR_CMR|CBU_1290 CBU_1290 "chaperone protein dnak" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 2004 (710.5 bits), Expect = 3.2e-207, P = 3.2e-207
Identities = 385/572 (67%), Positives = 476/572 (83%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M++IIGIDLGTTNSCV+++EG + +VIEN+EG+RTTPS++AY ++GE+LVGA AKRQAVT
Sbjct: 1 MAEIIGIDLGTTNSCVAVMEGGKVRVIENAEGSRTTPSIVAYTKDGEVLVGASAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGK-----KLAPPQI 184
N T+YA KRLIGR+F++ VQKDI ++PYKI+KADNGDAW+ V+ K KLAPPQI
Sbjct: 61 NADRTLYAIKRLIGRRFDDNVVQKDIKMVPYKIIKADNGDAWVEVKDKEGKSQKLAPPQI 120
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
SA+VL KMKKTAEDYLG E+ +AVITVPAYFND+QRQATKDAG+IAGL VKRIINEPTAA
Sbjct: 121 SAQVLIKMKKTAEDYLGHEVKDAVITVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAA 180
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
ALA+G+DK K DR I VYDLGGGTFD+SIIEIA+VDGE QFEVL+TNGDTFLGGEDFD
Sbjct: 181 ALAYGMDKK-KGDRKIAVYDLGGGTFDISIIEIAEVDGEHQFEVLATNGDTFLGGEDFDL 239
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
R+IDY+ EF K G+DL D +ALQR+K +AE+AKIELSSS+QT++N PYI P
Sbjct: 240 RLIDYLAGEFKKDEGVDLHNDPLALQRLKEAAEKAKIELSSSQQTDVNLPYITADASGPK 299
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
HLN+++TRAKLE LV++L+ RTIEPC++AIKDAG+KVS+I+D+ILVGG TRMPKVQE VK
Sbjct: 300 HLNIRLTRAKLESLVEDLVERTIEPCKVAIKDAGLKVSEIDDVILVGGQTRMPKVQEAVK 359
Query: 425 EFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKK 484
FFGK+ R+D+NPDEAVA+GAAIQG+VLSG+ KD GIET+GG+MTK+I+K
Sbjct: 360 NFFGKEARKDVNPDEAVAIGAAIQGAVLSGEVKDVLLLDVTPLSLGIETLGGVMTKLIEK 419
Query: 485 NTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEV 544
NTTIPTK +QVFSTA+DNQ AVTV V QGEREM S NK LG F+L IPPA RG+PQIEV
Sbjct: 420 NTTIPTKANQVFSTADDNQTAVTVHVLQGEREMASANKSLGRFDLSDIPPAPRGVPQIEV 479
Query: 545 TFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAE 604
TFDIDANGILHV+AKDK TGKE I IKA+SGL++EE++KMV+ AEA+ + D++ EL +
Sbjct: 480 TFDIDANGILHVSAKDKATGKEQSIVIKASSGLSDEEVEKMVKDAEAHRDSDRKFHELVD 539
Query: 605 SRNHGESLIHSTKKSLKIKEAYEVLSDSEKRI 636
+RN +++IH+ +KS+K + EV +D + I
Sbjct: 540 ARNQADAMIHAAEKSVKDLGS-EVSADEKSAI 570
|
|
| TIGR_CMR|SO_1126 SO_1126 "chaperone protein DnaK" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1965 (696.8 bits), Expect = 4.4e-203, P = 4.4e-203
Identities = 378/588 (64%), Positives = 473/588 (80%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV++++G + +V+EN+EG RTTPS+IAY ++ E +VG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVLDGGKARVLENAEGDRTTPSIIAYTDD-ETIVGQPAKRQAVT 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP NT +A KRLIGR+F + EVQ+D+++MP+KI+ ADNGDAW+ RG K+APPQ+SAE+L
Sbjct: 60 NPNNTFFAIKRLIGRRFKDDEVQRDVNIMPFKIIAADNGDAWVESRGNKMAPPQVSAEIL 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAED+LG E+TEAVITVPAYFND+QRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 120 KKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYG 179
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
+DK + D + VYDLGGGTFD+SIIEI DG++ FEVL+TNGDT LGGEDFD R+I+Y
Sbjct: 180 IDKK-QGDNIVAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINY 238
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+ DEF K G+DLRKD +A+QR+K +AE+AKIELSS+ QTE+N PYI P HL +K
Sbjct: 239 LADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNQTEVNLPYITADATGPKHLVVK 298
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
ITRAKLE LV++LI RT+EP ++A+ DA + VSDIN++ILVGG TRMPKVQE V FFGK
Sbjct: 299 ITRAKLESLVEDLIIRTLEPLKVALADADLSVSDINEVILVGGQTRMPKVQEAVTNFFGK 358
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVAVGAAIQ VLSGD KD GIETMG +MTK+I+KNTTIP
Sbjct: 359 EPRKDVNPDEAVAVGAAIQAGVLSGDVKDVLLLDVTPLSLGIETMGSVMTKLIEKNTTIP 418
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK QVFSTA+DNQ AVT+ V QGER+ S NK LG+FNL+GI PA RG+PQIEV FDID
Sbjct: 419 TKAQQVFSTADDNQSAVTIHVLQGERKQASANKSLGQFNLDGIEPAPRGMPQIEVMFDID 478
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
A+GILHV+A DKKTGK+ ITIKA+SGL+EEE+ +MV+ AEA+AEEDK+ EL +SRN
Sbjct: 479 ADGILHVSATDKKTGKKQNITIKASSGLSEEEVAQMVRDAEAHAEEDKKFEELVQSRNQA 538
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA 657
+ L+H+TKK +++EA + L +K I + + ++ + G+ A
Sbjct: 539 DGLVHATKK--QVEEAGDALPSEDKAKI--EAAMSAVETAVKGNDKEA 582
|
|
| TIGR_CMR|CPS_3821 CPS_3821 "chaperone protein DnaK" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1936 (686.6 bits), Expect = 5.2e-200, P = 5.2e-200
Identities = 370/568 (65%), Positives = 460/568 (80%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV++++G +VIEN+EG RTTPS+I Y GE LVG PAKRQ+VT
Sbjct: 1 MGKIIGIDLGTTNSCVAVLDGDSVRVIENAEGDRTTPSIIGYTAEGETLVGQPAKRQSVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT+YA KRLIGR+F +KE Q+DI +MP+ IVKADNGDAW+ V+G+K+APPQ+SAEVL
Sbjct: 61 NPENTLYAIKRLIGRRFEDKETQRDIDIMPFGIVKADNGDAWVQVKGEKIAPPQVSAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAED+LG +TEAVITVPAYFND+QRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 121 KKMKKTAEDFLGETVTEAVITVPAYFNDSQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
+DK + D+ + VYDLGGGTFD+SIIEI ++DGE FEVL+TNGDT LGGEDFD R+I+Y
Sbjct: 181 MDKQ-EGDKVVAVYDLGGGTFDISIIEIDEMDGEHTFEVLATNGDTHLGGEDFDNRLINY 239
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
++ EF K G+DL D +A+QR+K +AE+AK ELSS++QT++N PYI P H+N+K
Sbjct: 240 LVAEFKKDQGMDLTSDPLAMQRLKEAAEKAKCELSSAQQTDVNLPYITADGSGPKHMNIK 299
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++++ T+EP + A+KDA + VS I+D+ILVGG +RMP VQ+ V +FFGK
Sbjct: 300 VTRAKLESLVEDMVKATLEPLKQALKDADLSVSKIDDVILVGGQSRMPLVQKTVTDFFGK 359
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVA GAAIQ VLSGD D GIETMGG+MTK+I KNTTIP
Sbjct: 360 EPRKDVNPDEAVASGAAIQAGVLSGDVTDVLLLDVTPLSLGIETMGGVMTKVIDKNTTIP 419
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK SQ FSTA+DNQ AVTV V QGER+ S NK LG+FNLEGI PA RG PQIEVTFDID
Sbjct: 420 TKQSQTFSTADDNQAAVTVHVCQGERKQASANKSLGQFNLEGIEPAQRGTPQIEVTFDID 479
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
A+GILHVTAKDK TGKE KITIKA+SGL++EE+++MV+ AEANA+ D + EL +RN
Sbjct: 480 ADGILHVTAKDKNTGKEQKITIKASSGLSDEEVEQMVRDAEANADADAKFEELVTARNQA 539
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ +IH+T+K +++EA E L +K I
Sbjct: 540 DGMIHATRK--QVEEAGEELPSEDKEKI 565
|
|
| TIGR_CMR|SPO_0043 SPO_0043 "chaperone protein DnaK" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 1882 (667.6 bits), Expect = 3.7e-196, Sum P(2) = 3.7e-196
Identities = 367/553 (66%), Positives = 458/553 (82%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M K+IGIDLGTTNSCV+I++G+QPKVIENSEGARTTPS++A+ + E LVG PAKRQAVT
Sbjct: 1 MGKVIGIDLGTTNSCVAIMDGAQPKVIENSEGARTTPSIVAFTDE-ERLVGQPAKRQAVT 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP NTI+ KRLIGR+ ++ EV KD ++P+ IV NGDAW+ +G+K +P QISA +L
Sbjct: 60 NPSNTIFGVKRLIGRRVDDAEVTKDKKMVPFTIVNGGNGDAWVEAKGEKYSPSQISAVIL 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
KMK+TAE YLG E+T+AVITVPAYFNDAQRQATKDAG+IAGLEV RIINEPTAAALA+G
Sbjct: 120 GKMKETAESYLGEEVTQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 179
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK K+ + I VYDLGGGTFDV+I+EI D DG FEV STNGDTFLGGEDFD RI++Y
Sbjct: 180 LDK--KNSQTIAVYDLGGGTFDVTILEI-D-DG--LFEVKSTNGDTFLGGEDFDMRIVNY 233
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAM-SNGAPVHLNL 368
+ DEF K +G+DL D +ALQR+K +AE+AKIELSS+ QTEIN+P+I+M +NG P+HL +
Sbjct: 234 LADEFKKEHGVDLSGDKMALQRLKEAAEKAKIELSSTTQTEINQPFISMGANGQPLHLVM 293
Query: 369 KITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG 428
K+TRAKLE LV +LI ++++PC+ A+KDAGI SD+++++LVGGMTRMPKV E+V +FFG
Sbjct: 294 KLTRAKLESLVGDLIKKSMDPCKAALKDAGISPSDVDEVVLVGGMTRMPKVFEEVTKFFG 353
Query: 429 KDPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTI 488
K+P + +NPDE VA+GAAIQ VL GD KD GIET+GG+ T++I +NTTI
Sbjct: 354 KEPHKGVNPDEVVAMGAAIQAGVLQGDVKDVVLLDVTPLSLGIETLGGVFTRLIDRNTTI 413
Query: 489 PTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548
PTK SQVFSTAEDNQ AVT++V+QGEREM + NKILG+FNLE IPPA RG+PQIEVTFDI
Sbjct: 414 PTKKSQVFSTAEDNQNAVTIRVFQGEREMAADNKILGQFNLEDIPPAPRGMPQIEVTFDI 473
Query: 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608
DANGI+ V+AKDK TGKE+KITI+A+ GL++E+I+KMV+ AE NAE DK +EL E+RN
Sbjct: 474 DANGIVSVSAKDKGTGKEHKITIQASGGLSDEDIEKMVKDAEENAEADKARKELVEARNQ 533
Query: 609 GESLIHSTKKSLK 621
ESLIHST+KS++
Sbjct: 534 AESLIHSTEKSVE 546
|
|
| TIGR_CMR|CPS_1313 CPS_1313 "chaperone protein DnaK" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 1897 (672.8 bits), Expect = 7.0e-196, P = 7.0e-196
Identities = 362/551 (65%), Positives = 449/551 (81%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M+KIIGIDLGTTNSCV+++EG K+IEN+EG+RTTPS++AY N E L G PAKRQ+VT
Sbjct: 1 MTKIIGIDLGTTNSCVAVMEGGIAKIIENAEGSRTTPSIVAYANN-ETLAGQPAKRQSVT 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
N NT++A KRLIGRKF++KEVQKDI L PYKIVKADNGDAW+ V GK L+P ++SA++L
Sbjct: 60 NSTNTLFAIKRLIGRKFDDKEVQKDIKLAPYKIVKADNGDAWVEVDGKALSPQEVSAQIL 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
RK+KK AE YLG +T+AVITVPAYFND+QRQATKDAG+IAGL VKRIINEPTAAALA+G
Sbjct: 120 RKLKKDAEAYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAAALAYG 179
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
+DK+ +D+ +VVYDLGGGTFD+SIIEI++VDGEKQFEVL+TNGDTFLGGEDFD R+I+Y
Sbjct: 180 VDKNSNADQKVVVYDLGGGTFDLSIIEISNVDGEKQFEVLATNGDTFLGGEDFDLRLINY 239
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+ DEF K +GID+ +D++ALQRIK +AE+AKIELSS+ QTE+N PY+ P HLN+K
Sbjct: 240 LADEFKKESGIDIHQDTLALQRIKEAAEKAKIELSSALQTEVNLPYVTADASGPKHLNVK 299
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LVD+L+ TI PC A+KDAG+ +D++++ILVGG TRMPKVQE VK FF K
Sbjct: 300 VTRAKLESLVDDLVKSTIAPCEQALKDAGLSKADVSEVILVGGQTRMPKVQEAVKTFFSK 359
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVA+GAAIQ V+SG D GIET+GG+MTK+I+KNTTIP
Sbjct: 360 EPRKDVNPDEAVAMGAAIQAGVMSGAVDDVLLLDVAPLSLGIETLGGVMTKLIEKNTTIP 419
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
T+ S+ FSTAEDNQ AVTV V QG+REM + NK LG+FNL I P RG Q+EVTFDID
Sbjct: 420 TRASETFSTAEDNQAAVTVHVLQGQREMATDNKSLGQFNLTDINPGPRGSVQVEVTFDID 479
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
NGIL+V+AKDK TGKE I I A+SGLTE+EI +MV+ AE +A EDK+ REL + RN
Sbjct: 480 VNGILNVSAKDKATGKEQSIKITASSGLTEDEINRMVKEAELHASEDKQKRELVDQRNQA 539
Query: 610 ESLIHSTKKSL 620
+ LIH+ + S+
Sbjct: 540 DQLIHTVQTSM 550
|
|
| TIGR_CMR|GSU_0033 GSU_0033 "chaperone protein dnaK" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
Identities = 359/552 (65%), Positives = 444/552 (80%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
MSK+IGIDLGTTNSCV+++EG +P VI N+EG+RTTPS++A+ E+GE LVG AKRQAVT
Sbjct: 1 MSKVIGIDLGTTNSCVAVMEGGEPVVIANAEGSRTTPSMVAFAESGERLVGQQAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGRK++ +EV+KDIS+ P+KIVKADNGDAW+ RGK + P+ISA VL
Sbjct: 61 NPENTLFAIKRLIGRKYDTEEVRKDISISPFKIVKADNGDAWVEARGKMYSAPEISAMVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMK+TAEDYLG +T+AVITVPAYFND+QRQATKDAG+IAGL V RIINEPTAAALA+G
Sbjct: 121 QKMKQTAEDYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVLRIINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK K D I V+DLGGGTFD+SI+E+ G+ FEV STNGDTFLGGEDFDQR+ID+
Sbjct: 181 LDK--KKDEKIAVFDLGGGTFDISILEL----GDGVFEVKSTNGDTFLGGEDFDQRVIDW 234
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
I DEF K GIDLR D +ALQR+K +AE+AK ELS+S +T+IN P+I P HL +K
Sbjct: 235 IADEFKKDQGIDLRGDKMALQRLKEAAEKAKCELSTSMETDINLPFITADATGPKHLTMK 294
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
++RAKLE L +L+ + PCR A+KDAG+ S+++++ILVGGMTRMP VQ++V+E FGK
Sbjct: 295 LSRAKLEALCADLLNKLEGPCRTALKDAGLSPSEVDEVILVGGMTRMPAVQKRVQEIFGK 354
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDXXXXXXXXXXXGIETMGGIMTKMIKKNTTIP 489
P + +NPDE VA+GAAIQG VL GD KD GIET+G +MTK+I+KNTTIP
Sbjct: 355 VPNKGVNPDEVVAIGAAIQGGVLRGDVKDVLLLDVTPLSLGIETLGSVMTKLIEKNTTIP 414
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
+ SQVFSTA DNQPAVT+ V QGEREM NK LG F L GIPPA RG+PQIEVTFDID
Sbjct: 415 CRKSQVFSTASDNQPAVTIHVLQGEREMAIDNKTLGNFELTGIPPAPRGVPQIEVTFDID 474
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGI+HV+AKD TGKE I I A+SGL++EEI KMV+ AEA++ EDK+ REL E+RNH
Sbjct: 475 ANGIVHVSAKDLGTGKEQSIRITASSGLSKEEIDKMVKEAEAHSAEDKKKRELVEARNHA 534
Query: 610 ESLIHSTKKSLK 621
++L +ST+KSLK
Sbjct: 535 DTLSYSTEKSLK 546
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q1BYX3 | DNAK_BURCA | No assigned EC number | 0.8076 | 0.5830 | 0.8476 | yes | N/A |
| A0K4S8 | DNAK_BURCH | No assigned EC number | 0.8076 | 0.5830 | 0.8476 | yes | N/A |
| A3NYX7 | DNAK_BURP0 | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
| Q0K757 | DNAK_CUPNH | No assigned EC number | 0.8257 | 0.5830 | 0.8476 | yes | N/A |
| Q7VVY2 | DNAK_BORPE | No assigned EC number | 0.7992 | 0.5989 | 0.8829 | yes | N/A |
| A9IGC3 | DNAK_BORPD | No assigned EC number | 0.8028 | 0.5989 | 0.8843 | yes | N/A |
| A1WAR6 | DNAK_ACISJ | No assigned EC number | 0.8094 | 0.5830 | 0.8529 | yes | N/A |
| O68191 | DNAK_BURPS | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
| B9MDJ7 | DNAK_ACIET | No assigned EC number | 0.8148 | 0.5830 | 0.8529 | yes | N/A |
| A1WGJ9 | DNAK_VEREI | No assigned EC number | 0.7931 | 0.5830 | 0.8437 | yes | N/A |
| A4SZR8 | DNAK_POLSQ | No assigned EC number | 0.7676 | 0.5989 | 0.8788 | yes | N/A |
| Q2SYZ4 | DNAK_BURTA | No assigned EC number | 0.8185 | 0.5830 | 0.8476 | yes | N/A |
| C1DD88 | DNAK_LARHH | No assigned EC number | 0.7985 | 0.5830 | 0.8582 | yes | N/A |
| Q62HD5 | DNAK_BURMA | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
| B1XRU1 | DNAK_POLNS | No assigned EC number | 0.7826 | 0.5841 | 0.8625 | yes | N/A |
| Q39JC8 | DNAK_BURS3 | No assigned EC number | 0.8112 | 0.5830 | 0.8476 | yes | N/A |
| Q0BI18 | DNAK_BURCM | No assigned EC number | 0.8076 | 0.5830 | 0.8476 | yes | N/A |
| Q3JP10 | DNAK_BURP1 | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
| Q7W519 | DNAK_BORPA | No assigned EC number | 0.7992 | 0.5989 | 0.8829 | yes | N/A |
| A3MN99 | DNAK_BURM7 | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
| B2JGE2 | DNAK_BURP8 | No assigned EC number | 0.8058 | 0.5830 | 0.8437 | yes | N/A |
| B3R6G7 | DNAK_CUPTR | No assigned EC number | 0.8239 | 0.5830 | 0.8516 | yes | N/A |
| A4G8D2 | DNAK_HERAR | No assigned EC number | 0.8729 | 0.5830 | 0.8489 | yes | N/A |
| Q8XW40 | DNAK_RALSO | No assigned EC number | 0.8275 | 0.5830 | 0.8450 | yes | N/A |
| Q145F1 | DNAK_BURXL | No assigned EC number | 0.8294 | 0.5830 | 0.8437 | yes | N/A |
| O33522 | DNAK_RALME | No assigned EC number | 0.8221 | 0.5830 | 0.8503 | yes | N/A |
| A1TLH9 | DNAK_ACIAC | No assigned EC number | 0.8166 | 0.5830 | 0.8425 | yes | N/A |
| B1JW19 | DNAK_BURCC | No assigned EC number | 0.8076 | 0.5830 | 0.8476 | yes | N/A |
| A2S565 | DNAK_BURM9 | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
| Q47HK2 | DNAK_DECAR | No assigned EC number | 0.7470 | 0.6010 | 0.8806 | yes | N/A |
| A1K4C5 | DNAK_AZOSB | No assigned EC number | 0.7731 | 0.5820 | 0.8580 | yes | N/A |
| A4JBS1 | DNAK_BURVG | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
| A6T226 | DNAK_JANMA | No assigned EC number | 0.8765 | 0.5830 | 0.8476 | yes | N/A |
| Q7WGI4 | DNAK_BORBR | No assigned EC number | 0.8010 | 0.5989 | 0.8829 | yes | N/A |
| A1VMG2 | DNAK_POLNA | No assigned EC number | 0.7949 | 0.5830 | 0.8516 | yes | N/A |
| C5CU12 | DNAK_VARPS | No assigned EC number | 0.8112 | 0.5830 | 0.8542 | yes | N/A |
| B2SXC6 | DNAK_BURPP | No assigned EC number | 0.8239 | 0.5830 | 0.8476 | yes | N/A |
| A3ND68 | DNAK_BURP6 | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
| B1Y786 | DNAK_LEPCP | No assigned EC number | 0.7894 | 0.5830 | 0.8529 | yes | N/A |
| B2UBP3 | DNAK_RALPJ | No assigned EC number | 0.8275 | 0.5830 | 0.8476 | yes | N/A |
| A9AGB8 | DNAK_BURM1 | No assigned EC number | 0.8148 | 0.5830 | 0.8503 | yes | N/A |
| Q2KWA2 | DNAK_BORA1 | No assigned EC number | 0.8185 | 0.5830 | 0.8555 | yes | N/A |
| Q21X09 | DNAK_RHOFD | No assigned EC number | 0.7613 | 0.6052 | 0.8786 | yes | N/A |
| B4EDZ2 | DNAK_BURCJ | No assigned EC number | 0.8094 | 0.5830 | 0.8476 | yes | N/A |
| A2SIR4 | DNAK_METPP | No assigned EC number | 0.7888 | 0.5830 | 0.8437 | yes | N/A |
| B1YTK0 | DNAK_BURA4 | No assigned EC number | 0.8076 | 0.5830 | 0.8476 | yes | N/A |
| A9BNG5 | DNAK_DELAS | No assigned EC number | 0.8076 | 0.5830 | 0.8503 | yes | N/A |
| Q46XI7 | DNAK_CUPPJ | No assigned EC number | 0.8166 | 0.5830 | 0.8516 | yes | N/A |
| A1V0U6 | DNAK_BURMS | No assigned EC number | 0.8130 | 0.5830 | 0.8476 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 945 | |||
| PRK00290 | 627 | PRK00290, dnaK, molecular chaperone DnaK; Provisio | 0.0 | |
| TIGR02350 | 595 | TIGR02350, prok_dnaK, chaperone protein DnaK | 0.0 | |
| pfam00012 | 598 | pfam00012, HSP70, Hsp70 protein | 0.0 | |
| PTZ00400 | 663 | PTZ00400, PTZ00400, DnaK-type molecular chaperone; | 0.0 | |
| COG0443 | 579 | COG0443, DnaK, Molecular chaperone [Posttranslatio | 0.0 | |
| CHL00094 | 621 | CHL00094, dnaK, heat shock protein 70 | 0.0 | |
| PRK13411 | 653 | PRK13411, PRK13411, molecular chaperone DnaK; Prov | 0.0 | |
| PRK13410 | 668 | PRK13410, PRK13410, molecular chaperone DnaK; Prov | 0.0 | |
| PTZ00186 | 657 | PTZ00186, PTZ00186, heat shock 70 kDa precursor pr | 0.0 | |
| PLN03184 | 673 | PLN03184, PLN03184, chloroplast Hsp70; Provisional | 0.0 | |
| cd11733 | 377 | cd11733, HSPA9-like_NBD, Nucleotide-binding domain | 0.0 | |
| cd10234 | 376 | cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding d | 0.0 | |
| PRK05183 | 616 | PRK05183, hscA, chaperone protein HscA; Provisiona | 0.0 | |
| PTZ00009 | 653 | PTZ00009, PTZ00009, heat shock 70 kDa protein; Pro | 0.0 | |
| TIGR01991 | 599 | TIGR01991, HscA, Fe-S protein assembly chaperone H | 0.0 | |
| PRK10767 | 371 | PRK10767, PRK10767, chaperone protein DnaJ; Provis | 0.0 | |
| cd11734 | 373 | cd11734, Ssq1_like_NBD, Nucleotide-binding domain | 1e-174 | |
| cd10170 | 369 | cd10170, HSP70_NBD, Nucleotide-binding domain of t | 1e-168 | |
| cd10241 | 374 | cd10241, HSPA5-like_NBD, Nucleotide-binding domain | 1e-159 | |
| cd10233 | 376 | cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding | 1e-149 | |
| cd10236 | 355 | cd10236, HscA_like_NBD, Nucleotide-binding domain | 1e-134 | |
| COG0484 | 371 | COG0484, DnaJ, DnaJ-class molecular chaperone with | 1e-132 | |
| TIGR02349 | 354 | TIGR02349, DnaJ_bact, chaperone protein DnaJ | 1e-130 | |
| cd10235 | 339 | cd10235, HscC_like_NBD, Nucleotide-binding domain | 1e-122 | |
| PRK01433 | 595 | PRK01433, hscA, chaperone protein HscA; Provisiona | 1e-114 | |
| PRK14280 | 376 | PRK14280, PRK14280, chaperone protein DnaJ; Provis | 1e-107 | |
| PRK14277 | 386 | PRK14277, PRK14277, chaperone protein DnaJ; Provis | 1e-105 | |
| PRK14294 | 366 | PRK14294, PRK14294, chaperone protein DnaJ; Provis | 1e-104 | |
| cd10228 | 381 | cd10228, HSPA4_like_NDB, Nucleotide-binding domain | 1e-101 | |
| PRK14301 | 373 | PRK14301, PRK14301, chaperone protein DnaJ; Provis | 1e-100 | |
| PRK14276 | 380 | PRK14276, PRK14276, chaperone protein DnaJ; Provis | 7e-95 | |
| PRK14298 | 377 | PRK14298, PRK14298, chaperone protein DnaJ; Provis | 4e-93 | |
| cd10237 | 417 | cd10237, HSPA13-like_NBD, Nucleotide-binding domai | 2e-92 | |
| PRK14300 | 372 | PRK14300, PRK14300, chaperone protein DnaJ; Provis | 2e-90 | |
| PRK14283 | 378 | PRK14283, PRK14283, chaperone protein DnaJ; Provis | 1e-84 | |
| PRK14286 | 372 | PRK14286, PRK14286, chaperone protein DnaJ; Provis | 6e-84 | |
| PRK14297 | 380 | PRK14297, PRK14297, chaperone protein DnaJ; Provis | 7e-83 | |
| PRK14287 | 371 | PRK14287, PRK14287, chaperone protein DnaJ; Provis | 7e-83 | |
| cd10230 | 388 | cd10230, HYOU1-like_NBD, Nucleotide-binding domain | 3e-82 | |
| PRK14284 | 391 | PRK14284, PRK14284, chaperone protein DnaJ; Provis | 6e-81 | |
| PRK14278 | 378 | PRK14278, PRK14278, chaperone protein DnaJ; Provis | 4e-79 | |
| cd10238 | 375 | cd10238, HSPA14-like_NBD, Nucleotide-binding domai | 1e-76 | |
| PRK14279 | 392 | PRK14279, PRK14279, chaperone protein DnaJ; Provis | 4e-75 | |
| PRK14291 | 382 | PRK14291, PRK14291, chaperone protein DnaJ; Provis | 8e-73 | |
| PRK14293 | 374 | PRK14293, PRK14293, chaperone protein DnaJ; Provis | 1e-72 | |
| PRK14295 | 389 | PRK14295, PRK14295, chaperone protein DnaJ; Provis | 8e-69 | |
| PRK14285 | 365 | PRK14285, PRK14285, chaperone protein DnaJ; Provis | 1e-68 | |
| cd11739 | 383 | cd11739, HSPH1_NBD, Nucleotide-binding domain of H | 6e-68 | |
| PRK14282 | 369 | PRK14282, PRK14282, chaperone protein DnaJ; Provis | 1e-66 | |
| PRK14292 | 371 | PRK14292, PRK14292, chaperone protein DnaJ; Provis | 3e-66 | |
| PRK14289 | 386 | PRK14289, PRK14289, chaperone protein DnaJ; Provis | 3e-65 | |
| cd11738 | 383 | cd11738, HSPA4L_NBD, Nucleotide-binding domain of | 2e-64 | |
| cd11737 | 383 | cd11737, HSPA4_NBD, Nucleotide-binding domain of H | 5e-64 | |
| PRK14281 | 397 | PRK14281, PRK14281, chaperone protein DnaJ; Provis | 1e-63 | |
| cd11732 | 377 | cd11732, HSP105-110_like_NBD, Nucleotide-binding d | 3e-62 | |
| PRK14290 | 365 | PRK14290, PRK14290, chaperone protein DnaJ; Provis | 3e-61 | |
| cd10232 | 386 | cd10232, ScSsz1p_like_NBD, Nucleotide-binding doma | 6e-61 | |
| cd10747 | 158 | cd10747, DnaJ_C, C-terminal substrate binding doma | 4e-55 | |
| PRK14288 | 369 | PRK14288, PRK14288, chaperone protein DnaJ; Provis | 5e-55 | |
| PRK14296 | 372 | PRK14296, PRK14296, chaperone protein DnaJ; Provis | 7e-51 | |
| PRK10266 | 306 | PRK10266, PRK10266, curved DNA-binding protein Cbp | 8e-39 | |
| cd10231 | 415 | cd10231, YegD_like, Escherichia coli YegD, a putat | 1e-36 | |
| PTZ00037 | 421 | PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov | 5e-34 | |
| cd10229 | 404 | cd10229, HSPA12_like_NBD, Nucleotide-binding domai | 2e-28 | |
| cd10719 | 65 | cd10719, DnaJ_zf, Zinc finger domain of DnaJ and H | 1e-25 | |
| pfam00684 | 65 | pfam00684, DnaJ_CXXCXGXG, DnaJ central domain | 8e-23 | |
| pfam01556 | 81 | pfam01556, DnaJ_C, DnaJ C terminal domain | 2e-19 | |
| PRK14299 | 291 | PRK14299, PRK14299, chaperone protein DnaJ; Provis | 1e-18 | |
| cd10225 | 320 | cd10225, MreB_like, MreB and similar proteins | 1e-16 | |
| PRK13930 | 335 | PRK13930, PRK13930, rod shape-determining protein | 4e-13 | |
| pfam06723 | 327 | pfam06723, MreB_Mbl, MreB/Mbl protein | 1e-11 | |
| COG1077 | 342 | COG1077, MreB, Actin-like ATPase involved in cell | 4e-11 | |
| TIGR02529 | 239 | TIGR02529, EutJ, ethanolamine utilization protein | 5e-11 | |
| PRK13929 | 335 | PRK13929, PRK13929, rod-share determining protein | 1e-10 | |
| PRK15080 | 267 | PRK15080, PRK15080, ethanolamine utilization prote | 2e-10 | |
| COG4820 | 277 | COG4820, EutJ, Ethanolamine utilization protein, p | 2e-10 | |
| TIGR00904 | 333 | TIGR00904, mreB, cell shape determining protein, M | 1e-09 | |
| cd00012 | 185 | cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- | 6e-09 | |
| PRK13928 | 336 | PRK13928, PRK13928, rod shape-determining protein | 6e-09 | |
| PRK13927 | 334 | PRK13927, PRK13927, rod shape-determining protein | 1e-08 | |
| PRK14299 | 291 | PRK14299, PRK14299, chaperone protein DnaJ; Provis | 4e-07 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 7e-07 | |
| PRK11678 | 450 | PRK11678, PRK11678, putative chaperone; Provisiona | 8e-06 | |
| COG0849 | 418 | COG0849, ftsA, Cell division ATPase FtsA [Cell div | 2e-05 | |
| COG2214 | 237 | COG2214, CbpA, DnaJ-class molecular chaperone [Pos | 4e-05 | |
| cd10747 | 158 | cd10747, DnaJ_C, C-terminal substrate binding doma | 6e-05 | |
| pfam00226 | 63 | pfam00226, DnaJ, DnaJ domain | 6e-05 | |
| TIGR03835 | 871 | TIGR03835, termin_org_DnaJ, terminal organelle ass | 0.002 | |
| cd10748 | 52 | cd10748, anti-TRAP, anti-TRAP (AT) protein specifi | 0.004 |
| >gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 1115 bits (2887), Expect = 0.0
Identities = 398/565 (70%), Positives = 479/565 (84%), Gaps = 10/565 (1%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+++EG +PKVIEN+EGARTTPSV+A+ ++GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NTI++ KRL+GR+ ++EVQKDI L+PYKIVKADNGDAW+ + GKK P +ISA +L
Sbjct: 61 NPENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMIL 118
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+K+KK AEDYLG ++TEAVITVPAYFNDAQRQATKDAG+IAGLEV RIINEPTAAALA+G
Sbjct: 119 QKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 178
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK K D I+VYDLGGGTFDVSI+EI G+ FEVLSTNGDT LGG+DFDQRIIDY
Sbjct: 179 LDK--KGDEKILVYDLGGGTFDVSILEI----GDGVFEVLSTNGDTHLGGDDFDQRIIDY 232
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+ DEF K NGIDLRKD +ALQR+K +AE+AKIELSS++QTEIN P+I P HL +K
Sbjct: 233 LADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIK 292
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAK E L ++L+ RTIEPC+ A+KDAG+ VSDI+++ILVGG TRMP VQE VKEFFGK
Sbjct: 293 LTRAKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGK 352
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+P + +NPDE VA+GAAIQG VL+GD KD+LLLDVTPLSLGIET+GG+MTK+I++NTTIP
Sbjct: 353 EPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIP 412
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK SQVFSTA DNQPAVT+ V QGEREM + NK LG FNL GIPPA RG+PQIEVTFDID
Sbjct: 413 TKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDID 472
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGI+HV+AKDK TGKE ITI A+SGL++EEI++MV+ AEANAEEDK+ +EL E+RN
Sbjct: 473 ANGIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQA 532
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEK 634
+SLI+ T+K+L KE + + EK
Sbjct: 533 DSLIYQTEKTL--KELGDKVPADEK 555
|
Length = 627 |
| >gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK | Back alignment and domain information |
|---|
Score = 925 bits (2393), Expect = 0.0
Identities = 373/563 (66%), Positives = 450/563 (79%), Gaps = 10/563 (1%)
Query: 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNP 131
KIIGIDLGTTNSCV+++EG +P VI N+EGARTTPSV+A+ +NGE LVG PAKRQAVTNP
Sbjct: 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 132 KNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRK 191
+NTIY+ KR +GR+F EV ++ +PYK+V D GD + V GK+ P +ISA +L+K
Sbjct: 61 ENTIYSIKRFMGRRF--DEVTEEAKRVPYKVV-GDGGDVRVKVDGKEYTPQEISAMILQK 117
Query: 192 MKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 251
+KK AE YLG ++TEAVITVPAYFNDAQRQATKDAG+IAGLEV RIINEPTAAALA+GLD
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 252 KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIL 311
KS K D I+V+DLGGGTFDVSI+EI G+ FEVLST GDT LGG+DFDQRIID++
Sbjct: 178 KSKK-DEKILVFDLGGGTFDVSILEI----GDGVFEVLSTAGDTHLGGDDFDQRIIDWLA 232
Query: 312 DEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKIT 371
DEF K GIDL KD +ALQR+K +AE+AKIELSS TEIN P+I P HL + +T
Sbjct: 233 DEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLT 292
Query: 372 RAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDP 431
RAK E L +L+ RT EP R A+KDAG+ SDI+++ILVGG TR+P VQE VK+FFGK+P
Sbjct: 293 RAKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEP 352
Query: 432 RRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTK 491
+ +NPDE VA+GAAIQG VL GD KD+LLLDVTPLSLGIET+GG+MTK+I++NTTIPTK
Sbjct: 353 NKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTK 412
Query: 492 FSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDAN 551
SQVFSTA DNQPAV + V QGER M + NK LG F L GIPPA RG+PQIEVTFDIDAN
Sbjct: 413 KSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDAN 472
Query: 552 GILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGES 611
GILHV+AKDK TGKE ITI A+SGL+EEEI++MV+ AEANAEEDK+ +E E+RN+ +S
Sbjct: 473 GILHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADS 532
Query: 612 LIHSTKKSLKIKEAYEVLSDSEK 634
L + +K+L KEA + L EK
Sbjct: 533 LAYQAEKTL--KEAGDKLPAEEK 553
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved [Protein fate, Protein folding and stabilization]. Length = 595 |
| >gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein | Back alignment and domain information |
|---|
Score = 878 bits (2272), Expect = 0.0
Identities = 357/566 (63%), Positives = 446/566 (78%), Gaps = 14/566 (2%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
+IGIDLGTTNSCV+++EG P+VI N EG RTTPSV+A+ E LVG AKRQAVTNPK
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPK-ERLVGQAAKRQAVTNPK 59
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR--GKKLAPPQISAEVLR 190
NT+++ KRLIGRKF++ VQ+DI +PYK+VK NGDA + VR G+ P QISA VL+
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 191 KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 250
K+K+TAE YLG +T+AVITVPAYFNDAQRQATKDAGRIAGL V RIINEPTAAALA+GL
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 251 DKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310
DK K +RN++V+DLGGGTFDVSI+EI G+ FEVL+TNGDT LGGEDFD R++D+
Sbjct: 180 DKKDK-ERNVLVFDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGEDFDNRLVDHF 234
Query: 311 LDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKI 370
++EF K GIDL KD ALQR++ +AE+AKIELSS+ QTEIN P+I ++ +
Sbjct: 235 VEEFKKKYGIDLSKDPRALQRLREAAEKAKIELSSN-QTEINLPFITAMA-DGKDVSGTL 292
Query: 371 TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD 430
TRAK E L +L RT+EP A+KDA + S+I++++LVGG TR+P VQE VKEFFGK+
Sbjct: 293 TRAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKE 352
Query: 431 PRRDINPDEAVAVGAAIQGSVLSG--DRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTI 488
P + +NPDEAVA+GAA+Q VLSG D KD+LLLDVTPLSLGIET+GG+MTK+I +NTTI
Sbjct: 353 PSKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTI 412
Query: 489 PTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548
PTK SQ+FSTA DNQ AV ++VYQGEREM NK+LG F L+GIPPA RG+PQIEVTFDI
Sbjct: 413 PTKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDI 472
Query: 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608
DANGIL V+AKDK TGKE KITI A+SGL+++EI++MV+ AE A EDK+ +E E++N
Sbjct: 473 DANGILTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNE 532
Query: 609 GESLIHSTKKSLKIKEAYEVLSDSEK 634
E ++S +KSL KE + L +++K
Sbjct: 533 AEEYVYSLEKSL--KEEGDKLPEADK 556
|
Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region. Length = 598 |
| >gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Score = 803 bits (2076), Expect = 0.0
Identities = 356/569 (62%), Positives = 460/569 (80%), Gaps = 10/569 (1%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQ 126
+ I+GIDLGTTNSCV+I+EGSQPKVIENSEG RTTPSV+A+ E+G+ LVG AKRQ
Sbjct: 37 AKATGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQ 96
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISA 186
AVTNP+NT++A KRLIGR+++E +K+ ++PYKIV+A NGDAWI +GKK +P QI A
Sbjct: 97 AVTNPENTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGA 156
Query: 187 EVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 246
VL KMK+TAE YLG ++ +AVITVPAYFND+QRQATKDAG+IAGL+V RIINEPTAAAL
Sbjct: 157 FVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAAL 216
Query: 247 AFGLDKS-GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR 305
AFG+DK+ GK+ I VYDLGGGTFD+SI+EI FEV +TNG+T LGGEDFDQR
Sbjct: 217 AFGMDKNDGKT---IAVYDLGGGTFDISILEILG----GVFEVKATNGNTSLGGEDFDQR 269
Query: 306 IIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVH 365
I++Y++ EF K GIDL+KD +ALQR++ +AE AKIELSS QTEIN P+I P H
Sbjct: 270 ILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKH 329
Query: 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKE 425
L +K++RAKLE L +L+ +TIEPC IKDAG+K ++ND+ILVGGMTRMPKV E VK+
Sbjct: 330 LQIKLSRAKLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKK 389
Query: 426 FFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKN 485
FGK+P + +NPDEAVA+GAAIQ VL G+ KDLLLLDVTPLSLGIET+GG+ T++I +N
Sbjct: 390 IFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRN 449
Query: 486 TTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVT 545
TTIPTK SQVFSTA DNQ V +KV+QGEREM + NK+LG+F+L GIPPA RG+PQIEVT
Sbjct: 450 TTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVT 509
Query: 546 FDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAES 605
FD+DANGI++++A DK TGK+ +ITI+++ GL++EEI+KMV+ AE E+D++ +EL ++
Sbjct: 510 FDVDANGIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDA 569
Query: 606 RNHGESLIHSTKKSLKIKEAYEVLSDSEK 634
+N E+LI+S +K ++ + + +SD++K
Sbjct: 570 KNEAETLIYSVEK--QLSDLKDKISDADK 596
|
Length = 663 |
| >gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 743 bits (1921), Expect = 0.0
Identities = 339/576 (58%), Positives = 420/576 (72%), Gaps = 33/576 (5%)
Query: 70 MSKIIGIDLGTTNSCVSIIE-GSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAV 128
K IGIDLGTTNS V+++ G PKVIEN+EG R TPSV+A+ +NGE+LVG AKRQAV
Sbjct: 4 AKKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAV 63
Query: 129 TNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEV 188
NP+NTI++ KR IGR N + V GKK P +ISA +
Sbjct: 64 DNPENTIFSIKRKIGRGSNGL-------------------KISVEVDGKKYTPEEISAMI 104
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
L K+K+ AE YLG ++T+AVITVPAYFNDAQRQATKDA RIAGL V R+INEPTAAALA+
Sbjct: 105 LTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAY 164
Query: 249 GLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308
GLDK ++ ++VYDLGGGTFDVS++EI G+ FEVL+T GD LGG+DFD +ID
Sbjct: 165 GLDK--GKEKTVLVYDLGGGTFDVSLLEI----GDGVFEVLATGGDNHLGGDDFDNALID 218
Query: 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNL 368
Y++ EF GIDLR D ALQR++ +AE+AKIELSS+ QT IN P I + L
Sbjct: 219 YLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLK 274
Query: 369 KITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG 428
++TRAK E L+ +L+ RTIEP A+KDAG++ SDI+ +ILVGG TR+P VQE VKEFFG
Sbjct: 275 ELTRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG 334
Query: 429 KDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTI 488
K+P + INPDEAVA+GAAIQ +VLSG+ D+LLLDV PLSLGIET+GG+ T +I++NTTI
Sbjct: 335 KEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTI 394
Query: 489 PTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548
P K SQ FSTA D Q AV + V+QGEREM + NK LG F L+GIPPA RG+PQIEVTFDI
Sbjct: 395 PVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDI 454
Query: 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608
DANGIL+VTAKD TGKE ITIKA+SGL++EEI++MV+ AEANA DK+ REL E+RN
Sbjct: 455 DANGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNE 514
Query: 609 GESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644
ESLI+S +K+LK +S+ EK I +
Sbjct: 515 AESLIYSLEKALK---EIVKVSEEEKEKIEEAITDL 547
|
Length = 579 |
| >gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70 | Back alignment and domain information |
|---|
Score = 734 bits (1898), Expect = 0.0
Identities = 325/572 (56%), Positives = 426/572 (74%), Gaps = 12/572 (2%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M K++GIDLGTTNS V+++EG +P VI N+EG RTTPS++AY + G++LVG AKRQAV
Sbjct: 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVI 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWI--SVRGKKLAPPQISAE 187
NP+NT Y+ KR IGRKF+E + ++ + YK+ NG+ I K +P +ISA+
Sbjct: 61 NPENTFYSVKRFIGRKFSE--ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQ 118
Query: 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 247
VLRK+ + A YLG +T+AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAA+LA
Sbjct: 119 VLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLA 178
Query: 248 FGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307
+GLDK K++ I+V+DLGGGTFDVSI+E+ G+ FEVLST+GDT LGG+DFD++I+
Sbjct: 179 YGLDK--KNNETILVFDLGGGTFDVSILEV----GDGVFEVLSTSGDTHLGGDDFDKKIV 232
Query: 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN 367
++++ EF K GIDL KD ALQR+ +AE+AKIELS+ QTEIN P+I + P H+
Sbjct: 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIE 292
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
+TRAK E L +LI R P A+KDA + SDI++++LVGG TR+P +QE VK+
Sbjct: 293 KTLTRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLL 352
Query: 428 GKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTT 487
GK P + +NPDE VA+GAA+Q VL+G+ KD+LLLDVTPLSLG+ET+GG+MTK+I +NTT
Sbjct: 353 GKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTT 412
Query: 488 IPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFD 547
IPTK S+VFSTA DNQ V + V QGERE+ NK LG F L+GIPPA RG+PQIEVTFD
Sbjct: 413 IPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFD 472
Query: 548 IDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRN 607
IDANGIL VTAKDK TGKE ITI+ S L ++E+++MV+ AE NA EDK RE + +N
Sbjct: 473 IDANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKN 532
Query: 608 HGESLIHSTKKSLKIKEAYEVLSDSEKRIIYD 639
ESL + +K ++KE + +S+ +K I +
Sbjct: 533 QAESLCYQAEK--QLKELKDKISEEKKEKIEN 562
|
Length = 621 |
| >gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 728 bits (1881), Expect = 0.0
Identities = 323/586 (55%), Positives = 431/586 (73%), Gaps = 13/586 (2%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M K+IGIDLGTTNSCV+++EG +P VI NSEG RTTPS++ + ++G+ LVG AKRQAVT
Sbjct: 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
N +NT+Y+ KR IGR++++ E ++ S +PY VK + + +RG+ P +ISA +L
Sbjct: 61 NAENTVYSIKRFIGRRWDDTEEER--SRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMIL 118
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+K+K+ AE YLG +T+AVITVPAYF DAQRQATKDAG IAGLEV RIINEPTAAALA+G
Sbjct: 119 QKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYG 178
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK + ++ I+V+DLGGGTFDVSI+++ G+ FEV +T G+ LGG+DFD I+D+
Sbjct: 179 LDKQDQ-EQLILVFDLGGGTFDVSILQL----GDGVFEVKATAGNNHLGGDDFDNCIVDW 233
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+++ F + GIDL +D +ALQR++ +AE+AKIELSS T IN P+I P HL ++
Sbjct: 234 LVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEME 293
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-G 428
+TRAK E L +L+ TIEP + A+KDAG+K DI+ +ILVGG TR+P VQE +++FF G
Sbjct: 294 LTRAKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGG 353
Query: 429 KDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTI 488
K P R +NPDEAVA+GAAIQ VL G+ KDLLLLDVTPLSLGIET+G + TK+I++NTTI
Sbjct: 354 KQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTI 413
Query: 489 PTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548
PT SQVFSTA D Q +V + V QGER M NK LG+F L GIPPA RG+PQIEV+F+I
Sbjct: 414 PTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEI 473
Query: 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608
D NGIL V+A+D+ TG+E I I GL+ EI++M Q AE AEED+R ++L E +N
Sbjct: 474 DVNGILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQ 533
Query: 609 GESLIHSTKKSLKIKEAYEVLSDSEKRII---YDQYGHAGIDPNMS 651
+SL++S + +L KE E++S+ K+ +Q A DPN+S
Sbjct: 534 ADSLLYSYESTL--KENGELISEELKQRAEQKVEQLEAALTDPNIS 577
|
Length = 653 |
| >gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Score = 725 bits (1873), Expect = 0.0
Identities = 295/555 (53%), Positives = 409/555 (73%), Gaps = 12/555 (2%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M +I+GIDLGTTNS V+++EG +P VI N+EG RTTPSV+ + ++GE+LVG A+RQ V
Sbjct: 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVL 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISL-MPYKIVKADNGDAWIS--VRGKKLAPPQISA 186
NP+NT Y KR IGR+++E + S +PY I + + G+ I ++ AP ++SA
Sbjct: 61 NPQNTFYNLKRFIGRRYDELD---PESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSA 117
Query: 187 EVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 246
+LRK+ A YLG +T AVITVPAYFND+QRQAT+DAGRIAGLEV+RI+NEPTAAAL
Sbjct: 118 MILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAAL 177
Query: 247 AFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306
A+GLD+S S + ++V+DLGGGTFDVS++E+ + FEV +T+GDT LGG DFD+RI
Sbjct: 178 AYGLDRS--SSQTVLVFDLGGGTFDVSLLEVGN----GVFEVKATSGDTQLGGNDFDKRI 231
Query: 307 IDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHL 366
+D++ ++F + GIDLR+D ALQR+ +AE+AKIELS T+I+ P+I + P H+
Sbjct: 232 VDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHI 291
Query: 367 NLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEF 426
++ R + E L +L+ R + P + A+KDAG+ DI++++LVGG TRMP VQ+ V+
Sbjct: 292 ETRLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTL 351
Query: 427 FGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNT 486
++P +++NPDE VAVGAAIQ +L+G+ KDLLLLDVTPLSLG+ET+GG+M K+I +NT
Sbjct: 352 IPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNT 411
Query: 487 TIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTF 546
TIP + S VFST+E+NQ +V + V+QGEREM S NK LG F L GIPPA RG+PQ++V F
Sbjct: 412 TIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAF 471
Query: 547 DIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESR 606
DIDANGIL V+A D+ TG+E +TI+ S L+E+E+ +M+Q AEA A+ED+R RE E R
Sbjct: 472 DIDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKR 531
Query: 607 NHGESLIHSTKKSLK 621
N +LI ++ L+
Sbjct: 532 NRALTLIAQAERRLR 546
|
Length = 668 |
| >gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Score = 683 bits (1763), Expect = 0.0
Identities = 339/605 (56%), Positives = 454/605 (75%), Gaps = 14/605 (2%)
Query: 65 HARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAK 124
++++ +IG+DLGTT SCV+ ++G + +V+ENSEG RTTPSV+A++ E LVG AK
Sbjct: 21 ESQKVQGDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFK-GSEKLVGLAAK 79
Query: 125 RQAVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWIS-VRGKKLAPPQ 183
RQA+TNP++T YA KRLIGR+F ++ +QKDI +PYKIV+A NGDAW+ GK+ +P Q
Sbjct: 80 RQAITNPQSTFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQ 139
Query: 184 ISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTA 243
I A VL KMK+TAE++LG +++ AV+T PAYFNDAQRQATKDAG IAGL V R++NEPTA
Sbjct: 140 IGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTA 199
Query: 244 AALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
AALA+G+DK+ D I VYDLGGGTFD+S++EIA FEV +TNGDT LGGEDFD
Sbjct: 200 AALAYGMDKT--KDSLIAVYDLGGGTFDISVLEIAG----GVFEVKATNGDTHLGGEDFD 253
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+ DYIL+EF K +GIDL K+ +ALQR++ +AE+AK ELSS+ +TE+N P+I +
Sbjct: 254 LALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGA 313
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
H+ + I+R+K E + LI R+I PC+ +KDAG+++ +IND++LVGGMTRMPKV E+V
Sbjct: 314 QHIQMHISRSKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEV 373
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIK 483
K+FF KDP R +NPDEAVA+GAA G VL GD K L+LLDVTPLSLGIET+GG+ T+MI
Sbjct: 374 KKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIP 433
Query: 484 KNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIE 543
KNTTIPTK SQ FSTA DNQ V +KV+QGEREM + N+++G+F+L GIPPA RG+PQIE
Sbjct: 434 KNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIE 493
Query: 544 VTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELA 603
VTFDIDANGI HVTAKDK TGK ITI AN GL++E+I++M++ +E +AE D+ REL
Sbjct: 494 VTFDIDANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELV 553
Query: 604 ESRNHGESLIHSTKKSLKIKEAYEVLSDSEK---RIIYDQYGHAGIDPNMSGSSASAEAS 660
E RN+ E+ + + ++ L ++ +SD+EK + + + A +PN++ +A
Sbjct: 554 EVRNNAETQLTTAERQLG---EWKYVSDAEKENVKTLVAELRKAMENPNVAKDDLAAATD 610
Query: 661 NFADA 665
A
Sbjct: 611 KLQKA 615
|
Length = 657 |
| >gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Score = 678 bits (1752), Expect = 0.0
Identities = 307/557 (55%), Positives = 411/557 (73%), Gaps = 10/557 (1%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQ 126
R + K++GIDLGTTNS V+ +EG +P ++ N+EG RTTPSV+AY +NG+ LVG AKRQ
Sbjct: 35 RVVAEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQ 94
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWI--SVRGKKLAPPQI 184
AV NP+NT ++ KR IGRK +E V ++ + Y++V+ +NG+ + GK+ A +I
Sbjct: 95 AVVNPENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEI 152
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
SA+VLRK+ A +L ++T+AVITVPAYFND+QR ATKDAGRIAGLEV RIINEPTAA
Sbjct: 153 SAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAA 212
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
+LA+G +K KS+ I+V+DLGGGTFDVS++E+ G+ FEVLST+GDT LGG+DFD+
Sbjct: 213 SLAYGFEK--KSNETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDK 266
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
RI+D++ F K GIDL KD ALQR+ +AE+AKIELSS QT I+ P+I + P
Sbjct: 267 RIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPK 326
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
H++ +TRAK E L +L+ R P A++DA + DI+++ILVGG TR+P VQE VK
Sbjct: 327 HIDTTLTRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVK 386
Query: 425 EFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKK 484
+ GKDP +NPDE VA+GAA+Q VL+G+ D++LLDVTPLSLG+ET+GG+MTK+I +
Sbjct: 387 KLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPR 446
Query: 485 NTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEV 544
NTT+PT S+VFSTA D Q +V + V QGERE V NK LG F L+GIPPA RG+PQIEV
Sbjct: 447 NTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEV 506
Query: 545 TFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAE 604
FDIDANGIL V+A DK TGK+ ITI S L ++E+++MVQ AE A+EDK R+ +
Sbjct: 507 KFDIDANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVD 566
Query: 605 SRNHGESLIHSTKKSLK 621
++N +S+++ T+K LK
Sbjct: 567 TKNQADSVVYQTEKQLK 583
|
Length = 673 |
| >gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9, Escherichia coli DnaK, and similar proteins | Back alignment and domain information |
|---|
Score = 664 bits (1715), Expect = 0.0
Identities = 259/383 (67%), Positives = 309/383 (80%), Gaps = 6/383 (1%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
+IGIDLGTTNSCV+++EG PKVIEN+EGARTTPSV+A+ ++GE LVG PAKRQAVT
Sbjct: 1 KGAVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT+YA KRLIGR+F++ EVQKDI +PYKIVKA NGDAW+ GKK +P QI A VL
Sbjct: 61 NPENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHGKKYSPSQIGAFVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
KMK+TAE YLG + AVITVPAYFND+QRQATKDAG+IAGL V R+INEPTAAALA+G
Sbjct: 121 MKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK D+ I VYDLGGGTFD+SI+EI FEV STNGDTFLGGEDFD ++ +
Sbjct: 181 LDKKD--DKVIAVYDLGGGTFDISILEIQKGV----FEVKSTNGDTFLGGEDFDNALLRH 234
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
++ EF K GIDL KD++ALQR++ +AE+AKIELSSS QT+IN PYI P HLN+K
Sbjct: 235 LVKEFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMK 294
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAK E LV +LI RTIEPC+ A+KDAG+ SDI ++ILVGGMTRMPKVQE VKE FGK
Sbjct: 295 LTRAKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGK 354
Query: 430 DPRRDINPDEAVAVGAAIQGSVL 452
+P + +NPDEAVA+GAAIQG VL
Sbjct: 355 EPSKGVNPDEAVAIGAAIQGGVL 377
|
This subgroup includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, and Saccharomyces cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. HSPA9 is involved in multiple processses including mitochondrial import, antigen processing, control of cellular proliferation and differentiation, and regulation of glucose responses. During glucose deprivation-induced cellular stress, HSPA9 plays an important role in the suppression of apoptosis by inhibiting a conformational change in Bax that allow the release of cytochrome c. DnaK modulates the heat shock response in Escherichia coli. It protects E. coli from protein carbonylation, an irreversible oxidative modification that increases during organism aging and bacterial growth arrest. Under severe thermal stress, it functions as part of a bi-chaperone system: the DnaK system and the ring-forming AAA+ chaperone ClpB (Hsp104) system, to promote cell survival. DnaK has also been shown to cooperate with GroEL and the ribosome-associated Escherichia coli Trigger Factor in the proper folding of cytosolic proteins. S. cerevisiae Ssc1p is the major HSP70 chaperone of the mitochondrial matrix, promoting translocation of proteins from the cytosol, across the inner membrane, to the matrix, and their subsequent folding. Ssc1p interacts with Tim44, a peripheral inner membrane protein associated with the TIM23 protein translocase. It is also a subunit of the endoSceI site-specific endoDNase and is required for full endoSceI activity. Ssc1p plays roles in the import of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Ssc1 also participates in translational regulation of cytochrome c oxidase (COX) biogenesis by interacting with Mss51 and Mss51-containing complexes. Length = 377 |
| >gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human HSPA9 and similar proteins | Back alignment and domain information |
|---|
Score = 635 bits (1640), Expect = 0.0
Identities = 242/385 (62%), Positives = 304/385 (78%), Gaps = 11/385 (2%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+++EG +P VI N+EG+RTTPSV+A+ + GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAW--ISVRGKKLAPPQISAE 187
NP+NTI++ KR +GRKF+E E ++ +PYK+V + G+ I GK P +ISA
Sbjct: 61 NPENTIFSIKRFMGRKFDEVEEERK---VPYKVVVDEGGNYKVEIDSNGKDYTPQEISAM 117
Query: 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 247
+L+K+K+ AE YLG ++TEAVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALA
Sbjct: 118 ILQKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 177
Query: 248 FGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307
+GLDK K + I+VYDLGGGTFDVSI+EI G+ FEVL+TNGDT LGG+DFDQRII
Sbjct: 178 YGLDK--KGNEKILVYDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGDDFDQRII 231
Query: 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN 367
D++++EF K GIDLRKD +ALQR+K +AE+AKIELSS +TEIN P+I P HL
Sbjct: 232 DWLVEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLE 291
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
+ +TRAK E L ++L+ RTIEP + A+KDA + SDI+++ILVGG TR+P VQE VKE F
Sbjct: 292 MTLTRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELF 351
Query: 428 GKDPRRDINPDEAVAVGAAIQGSVL 452
GK+P + +NPDE VA+GAAIQG VL
Sbjct: 352 GKEPNKGVNPDEVVAIGAAIQGGVL 376
|
This subfamily includes human mitochondrial HSPA9 (also known as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9 maps to 5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae Stress-seventy subfamily Q protein 1/Ssq1p (also called Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae Stress-Seventy subfamily C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa subunit). It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs); for Escherichia coli DnaK, these are the DnaJ and GrpE, respectively. Length = 376 |
| >gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 625 bits (1615), Expect = 0.0
Identities = 251/576 (43%), Positives = 374/576 (64%), Gaps = 32/576 (5%)
Query: 65 HARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAK 124
H RR+ +GIDLGTTNS V+ + Q +V+ + +G PSV+ Y E+G I VG A+
Sbjct: 16 HQRRL---AVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEAR 71
Query: 125 RQAVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQI 184
A +PKNTI + KR +GR ++Q+ +PY+ V ++NG I +P ++
Sbjct: 72 ANAAQDPKNTISSVKRFMGRSL--ADIQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEV 129
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
SAE+L+ +++ AE+ LGGE+ AVITVPAYF+DAQRQATKDA R+AGL V R++NEPTAA
Sbjct: 130 SAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAA 189
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD-VDGEKQFEVLSTNGDTFLGGEDFD 303
A+A+GLD + I VYDLGGGTFD+SI+ ++ V FEVL+T GD+ LGG+DFD
Sbjct: 190 AIAYGLDS--GQEGVIAVYDLGGGTFDISILRLSKGV-----FEVLATGGDSALGGDDFD 242
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+ D+IL++ G+ R D + + +A AK LS + E++ +A+ G
Sbjct: 243 HLLADWILEQ----AGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVS---VALWQG-- 293
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
+ITR + L+ L+ RT+ CR A++DAG++ ++ ++++VGG TR+P V+E V
Sbjct: 294 -----EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAV 348
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDR--KDLLLLDVTPLSLGIETMGGIMTKM 481
EFFG+ P I+PD+ VA+GAAIQ +L+G++ D+LLLDV PLSLG+ETMGG++ K+
Sbjct: 349 GEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKI 408
Query: 482 IKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQ 541
I +NTTIP +Q F+T +D Q A+ + V QGERE+V+ + L F L GIPP G +
Sbjct: 409 IPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAAR 468
Query: 542 IEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRE 601
I VTF +DA+G+L VTA +K TG E I +K + GLT++EI +M++ + ++AEED + R
Sbjct: 469 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARA 528
Query: 602 LAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
LAE + E ++ + + +L ++LS +E+ I
Sbjct: 529 LAEQKVEAERVLEALQAAL--AADGDLLSAAERAAI 562
|
Length = 616 |
| >gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Score = 624 bits (1610), Expect = 0.0
Identities = 293/572 (51%), Positives = 405/572 (70%), Gaps = 20/572 (3%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IGIDLGTT SCV + + ++I N +G RTTPS +A+ + E L+G AK Q NP+N
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPEN 65
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV--RG--KKLAPPQISAEVL 189
T++ AKRLIGRKF++ VQ D+ P+K+ + I V +G K P +IS+ VL
Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMK+ AE YLG ++ +AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+A+G
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G ++N++++DLGGGTFDVS++ I D FEV +T GDT LGGEDFD R++++
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIED----GIFEVKATAGDTHLGGEDFDNRLVEF 241
Query: 310 ILDEFNKIN-GIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNL 368
+ +F + N G DL + AL+R++ ERAK LSSS Q I ++ G + N+
Sbjct: 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIE--IDSLFEG--IDYNV 297
Query: 369 KITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF- 427
I+RA+ E L + T++P +KDAG+ +++++LVGG TR+PKVQ +K+FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 428 GKDPRRDINPDEAVAVGAAIQGSVLSGDR----KDLLLLDVTPLSLGIETMGGIMTKMIK 483
GK+P + INPDEAVA GAA+Q ++L+G++ +DLLLLDVTPLSLG+ET GG+MTK+I+
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 484 KNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIE 543
+NTTIPTK SQ+F+T DNQP V ++V++GER M N +LG+F+L+GIPPA RG+PQIE
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 544 VTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEEIKKMVQSAEANAEEDKRLREL 602
VTFDIDANGIL+V+A+DK TGK NKITI + G L++ +I +MV AE ED+ RE
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRER 537
Query: 603 AESRNHGESLIHSTKKSLKIKEAYEVLSDSEK 634
E++N E+ +S K +L+ ++ LSDS+K
Sbjct: 538 VEAKNGLENYCYSMKNTLQDEKVKGKLSDSDK 569
|
Length = 653 |
| >gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Score = 593 bits (1532), Expect = 0.0
Identities = 250/567 (44%), Positives = 366/567 (64%), Gaps = 23/567 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
+GIDLGTTNS V+ + P+V+ ++EG PSV+ Y ++G + VG A A +PK
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
NTI + KRL+GR E K S++PY+ V + + P ++SAE+L+K+
Sbjct: 61 NTISSVKRLMGRS---IEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKL 117
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
K+ AE+ LGG++ AVITVPAYF+DAQRQATKDA R+AGL V R++NEPTAAA+A+GLDK
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
+ S+ VYDLGGGTFDVSI+++ G FEVL+T GD+ LGG+DFD + +IL
Sbjct: 178 A--SEGIYAVYDLGGGTFDVSILKL--TKG--VFEVLATGGDSALGGDDFDHALAKWILK 231
Query: 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITR 372
+ GI + + + +A AK L+ ++ E++ +G K+TR
Sbjct: 232 Q----LGISADLNPEDQRLLLQAARAAKEALTDAESVEVD----FTLDGKDFKG--KLTR 281
Query: 373 AKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
+ E L+ L+ +T+ CR A++DAG+ V +I ++LVGG TRMP V+ V E FG++P
Sbjct: 282 DEFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPL 341
Query: 433 RDINPDEAVAVGAAIQGSVLSGDR--KDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPT 490
DI+PD+ VA+GAAIQ +L+G+R DLLLLDVTPLSLGIETMGG++ K+I +NT IP
Sbjct: 342 TDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPV 401
Query: 491 KFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDA 550
+Q F+T +D Q A+ + V QGERE+V + L F L GIPP + G +I VTF +DA
Sbjct: 402 ARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDA 461
Query: 551 NGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610
+G+L V+A+++ TG E I +K + GL++EEI++M++ + +AEED R LAE + E
Sbjct: 462 DGLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAE 521
Query: 611 SLIHSTKKSLKIKEAYEVLSDSEKRII 637
++ + + +L ++LS+ E+ I
Sbjct: 522 RILEALQAAL--AADGDLLSEDERAAI 546
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK [Protein fate, Protein folding and stabilization]. Length = 599 |
| >gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 537 bits (1385), Expect = 0.0
Identities = 184/324 (56%), Positives = 230/324 (70%), Gaps = 3/324 (0%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRD 681
IKEAYEVLSD +KR YDQYGHA + G F D FGDIFGDIFG R
Sbjct: 50 IKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGGFGG-GGGFGDIFGDIFGDIFGGGRGG- 107
Query: 682 NNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSG 741
+ G DLRYN+EITLE+A G IR+P+ C +C+G+GAK GTSP +C TC G
Sbjct: 108 GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHG 167
Query: 742 QGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRI 801
GQVRMQQGFF++QQTCP C G GK+I PC C+G GR+++ KTL VKIPAG++ RI
Sbjct: 168 AGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRI 227
Query: 802 RSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLN 861
R +G GE G GG G+LY++IH+K H +FERDG+DL+ E+PISF+TAALGGEIE PTL+
Sbjct: 228 RLSGEGEAGERGGPAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLD 287
Query: 862 GKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLET 921
G+ IPEGTQ+GK+FRLRGKG+K++RS GDL+C V +ETPV LT+ QK+LL E
Sbjct: 288 GRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGDLYCQVVVETPVNLTKRQKELLEEFEE 347
Query: 922 SILEGGFKHNPRTKTVLNKVKNFF 945
S G KH+P++K +KVK+FF
Sbjct: 348 SFESGE-KHSPKSKGFFDKVKDFF 370
|
Length = 371 |
| >gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces cerevisiae Ssq1 and similar proteins | Back alignment and domain information |
|---|
Score = 509 bits (1312), Expect = e-174
Identities = 224/382 (58%), Positives = 287/382 (75%), Gaps = 10/382 (2%)
Query: 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTN 130
S IIGIDLGTTNSCV++I+ + P +IEN+EG RTTPS++++ ILVG AKRQ +
Sbjct: 2 STIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSF-TKTGILVGEAAKRQEALH 60
Query: 131 PKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLR 190
P+NT +A KRLIGR+F + EVQ+ + + YKIV+ NGDAWI GKK +P QI++ VL+
Sbjct: 61 PENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLK 120
Query: 191 KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 250
K+KKTAE YLG + EAVITVPAYFND+QRQATKDAG +AGL+V RIINEPTAAALA+G+
Sbjct: 121 KLKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGI 180
Query: 251 DKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310
DK K ++NI VYDLGGGTFD+SI+ I D FEV +TNGDT LGGEDFD I+ YI
Sbjct: 181 DKR-KENKNIAVYDLGGGTFDISILNIED----GVFEVKATNGDTMLGGEDFDNAIVQYI 235
Query: 311 LDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKI 370
+ EF + IDL ++ A+QRIK +AE+AKIELSSS+++ I PY+ P HL + I
Sbjct: 236 IKEFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYLD----GPKHLRITI 291
Query: 371 TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD 430
TR + E L + RTI PC+ +KDAG++ DI+++ILVGGMTRMP +Q V+E FGK
Sbjct: 292 TRREFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKK 351
Query: 431 PRRDINPDEAVAVGAAIQGSVL 452
P + +NPDEAVA+GAAIQGS+L
Sbjct: 352 PSKSVNPDEAVALGAAIQGSIL 373
|
Ssq1p (also called Stress-seventy subfamily Q protein 1, Ssc2p, Ssh1p, mtHSP70 homolog) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial chaperone that is involved in iron-sulfur (Fe/S) center biogenesis. Ssq1p plays a role in the maturation of Yfh1p, a nucleus-encoded mitochondrial protein involved in iron homeostasis (and a homolog of human frataxin, implicated in the neurodegenerative disease, Friedreich's ataxia). Length = 373 |
| >gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family | Back alignment and domain information |
|---|
Score = 494 bits (1273), Expect = e-168
Identities = 194/377 (51%), Positives = 264/377 (70%), Gaps = 10/377 (2%)
Query: 74 IGIDLGTTNSCVSII-EGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
IGIDLGTTNS V+ + G +P++I N EG+RTTPSV+ + +GE+LVG AKRQA+ NP+
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
NT+ KRLIGRKF++ VQ + A + + GKK +P ++SA +L+K+
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKV-IGVDRGAPIIPVPVELGGKKYSPEEVSALILKKL 119
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
K+ AE YLG +TEAVITVPAYFNDAQR+ATK+A IAGL V R+INEPTAAALA+GLDK
Sbjct: 120 KEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDK 179
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
+ R I+V+DLGGGTFDVS++E+ FEVL+T GD LGG+DFD + DY+ +
Sbjct: 180 KDEKGRTILVFDLGGGTFDVSLVEV----EGGVFEVLATGGDNHLGGDDFDNALADYLAE 235
Query: 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITR 372
+F + GIDLR D AL+R+K +AE+AKI LSSS++ I P + G+ L +++TR
Sbjct: 236 KFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGL----GSGGDLEVELTR 291
Query: 373 AKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
+ E L+ L+ RTI+ + DAG+K DI+ ++LVGG +R+P V+E ++E FGK P
Sbjct: 292 EEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPL 351
Query: 433 RDINPDEAVAVGAAIQG 449
R I+PDEAVA+GAAI
Sbjct: 352 RSIDPDEAVALGAAIYA 368
|
HSP70 (70-kDa heat shock protein) family chaperones assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some HSP70 family members are not chaperones but instead, function as NEFs to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle, some may function as both chaperones and NEFs. Length = 369 |
| >gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5 and similar proteins | Back alignment and domain information |
|---|
Score = 470 bits (1212), Expect = e-159
Identities = 209/384 (54%), Positives = 278/384 (72%), Gaps = 18/384 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
+IGIDLGTT SCV + + + ++I N +G R TPS +A+ + GE L+G AK QA +NP+
Sbjct: 3 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTD-GERLIGDAAKNQATSNPE 61
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDA-WISVRGKK--LAPPQISAEVL 189
NTI+ KRLIGRKF++KEVQKDI L+PYK+V D + V+G+K +P +ISA VL
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVL 121
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
KMK+ AE YLG ++ AV+TVPAYFNDAQRQATKDAG IAGL V RIINEPTAAA+A+G
Sbjct: 122 TKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYG 181
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G ++NI+V+DLGGGTFDVS++ I + FEVL+TNGDT LGGEDFDQR++++
Sbjct: 182 LDKKGG-EKNILVFDLGGGTFDVSLLTIDN----GVFEVLATNGDTHLGGEDFDQRVMEH 236
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT--EINEPYIAMSNGAPVHLN 367
+ F K +G D+ KD ALQ+++ E+AK LSS QT EI ++ +G +
Sbjct: 237 FIKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIE----SLFDG--EDFS 290
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
+TRAK E L +L +T++P + ++DA +K SDI++I+LVGG TR+PKVQ+ +KEFF
Sbjct: 291 ETLTRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFF 350
Query: 428 -GKDPRRDINPDEAVAVGAAIQGS 450
GK+P R INPDEAVA GAA+Q
Sbjct: 351 NGKEPSRGINPDEAVAYGAAVQAG 374
|
This subfamily includes human HSPA5 (also known as 70-kDa heat shock protein 5, glucose-regulated protein 78/GRP78, and immunoglobulin heavy chain-binding protein/BIP, MIF2; the gene encoding HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p (also known as Grp78p), and related proteins. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. HSPA5 and Kar2p are chaperones of the endoplasmic reticulum (ER). Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Multiple ER DNAJ domain proteins have been identified and may exist in distinct complexes with HSPA5 in various locations in the ER, for example DNAJC3-p58IPK in the lumen. HSPA5-NEFs include SIL1 and an atypical HSP70 family protein HYOU1/ORP150. The ATPase activity of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p. Length = 374 |
| >gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar proteins | Back alignment and domain information |
|---|
Score = 445 bits (1147), Expect = e-149
Identities = 196/387 (50%), Positives = 264/387 (68%), Gaps = 19/387 (4%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IGIDLGTT SCV + + + ++I N +G RTTPS +A+ + E L+G AK Q NP N
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTN 60
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV--RG--KKLAPPQISAEVL 189
T++ AKRLIGRKF++ VQ D+ P+K+V G I V +G K P +IS+ VL
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVV-NGGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
KMK+ AE YLG +T AVITVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+A+G
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK G +RN++++DLGGGTFDVS++ I D FEV +T GDT LGGEDFD R++++
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIED----GIFEVKATAGDTHLGGEDFDNRLVNH 235
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT--EINEPYIAMSNGAPVHLN 367
+ EF + + D+ + AL+R++ + ERAK LSSS Q EI+ ++ G +
Sbjct: 236 FVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEID----SLFEG--IDFY 289
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
ITRA+ E L +L T+EP ++DA + S I+DI+LVGG TR+PKVQ+ +++FF
Sbjct: 290 TSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFF 349
Query: 428 -GKDPRRDINPDEAVAVGAAIQGSVLS 453
GK+ + INPDEAVA GAA+Q ++LS
Sbjct: 350 NGKELNKSINPDEAVAYGAAVQAAILS 376
|
This subfamily includes human HSPA1A (70-kDa heat shock protein 1A, also known as HSP72; HSPA1; HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat shock protein 1B, also known as HSPA1A; HSP70-2; HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like, also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The genes for these three HSPA1 proteins map in close proximity on the major histocompatibility complex (MHC) class III region on chromosome 6, 6p21.3. This subfamily also includes human HSPA8 (heat shock 70kDa protein 8, also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73; NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human HSPA2 (70-kDa heat shock protein 2, also known as HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human HSPA6 (also known as heat shock 70kDa protein 6 (HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3), human HSPA7 (heat shock 70kDa protein 7 , also known as HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces cerevisiae Stress-Seventy subfamily B/Ssb1p. This subfamily belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Associations of polymorphisms within the MHC-III HSP70 gene locus with longevity, systemic lupus erythematosus, Meniere's disease, noise-induced hearing loss, high-altitude pulmonary edema, and coronary heart disease, have been found. HSPA2 is involved in cancer cell survival, is required for maturation of male gametophytes, and is linked to male infertility. The induction of HSPA6 is a biomarker of cellular stress. HSPA8 participates in the folding and trafficking of client proteins to different subcellular compartments, and in the signal transduction and apoptosis process; it has been shown to protect cardiomyocytes against oxidative stress partly through an interaction with alpha-enolase. S. cerevisiae Ssb1p, is part of the ribosome-associated complex (RAC), it acts as a chaperone for nascent polypeptides, and is important for translation fidelity; Ssb1p is also a [PSI+] prion-curing factor. Length = 376 |
| >gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and similar proteins | Back alignment and domain information |
|---|
Score = 405 bits (1044), Expect = e-134
Identities = 166/378 (43%), Positives = 235/378 (62%), Gaps = 24/378 (6%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
IGIDLGTTNS V+ + + K++ + G PSV+ Y + G I VG A + A+++PK
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGG-ISVGHDALKLAISDPK 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
NTI + KRL+G+ + ++K +P + + G + + P ++SAE+L+ +
Sbjct: 61 NTISSVKRLMGKSIED--IKKSFPYLPI-LEGKNGGIILFHTQQGTVTPVEVSAEILKAL 117
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
K+ AE LGGEI AVITVPAYF+DAQRQATKDA R+AGL V R++NEPTAAALA+GLDK
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
K + VYDLGGGTFDVSI+++ FEVL+T GD+ LGG+DFDQ + + +L
Sbjct: 178 --KKEGIYAVYDLGGGTFDVSILKLHK----GVFEVLATGGDSALGGDDFDQLLAELLLK 231
Query: 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITR 372
++ + + A +AK LS +++ E+ G ITR
Sbjct: 232 KYG----LKSLISDEDQAELLLIARKAKEALSGAEEVEV--------RGQD--FKCTITR 277
Query: 373 AKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
+ E L+D L+ +T+ C+ A++DAG+ V DI +ILVGG TR+P VQE V +FFG+ P
Sbjct: 278 EEFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPL 337
Query: 433 RDINPDEAVAVGAAIQGS 450
DINPDE VA+GAA+Q +
Sbjct: 338 CDINPDEVVAIGAALQAN 355
|
Escherichia coli HscA (heat shock cognate protein A, also called Hsc66), belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HscA's partner J-domain protein is HscB; it does not appear to require a NEF, and has been shown to be induced by cold-shock. The HscA-HscB chaperone/co-chaperone pair is involved in [Fe-S] cluster assembly. Length = 355 |
| >gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 400 bits (1030), Expect = e-132
Identities = 169/328 (51%), Positives = 212/328 (64%), Gaps = 10/328 (3%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDR 680
+I EAYEVLSD EKR YDQ+GHAG G F FGDIF D FG
Sbjct: 49 EINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGF---GFGGFGGDFGDIFEDFFGGGGGG 105
Query: 681 DNNNKGSN-GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTC 739
G DLRYNLEITLE+A +G IRV C +C+G+GAK GT P +C TC
Sbjct: 106 RRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTC 165
Query: 740 SGQGQVRMQQ--GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIEN 797
+G GQVR Q GFFS QQTCP C G GK+I PC C G GR+K+ K++ V IPAG+++
Sbjct: 166 NGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDD 225
Query: 798 NMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEA 857
RIR +G GE G NGG G+LY+ +H+KPH +FERDGDDL+ E+PISF+ AALGGEIE
Sbjct: 226 GDRIRLSGEGEAGPNGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEV 285
Query: 858 PTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLR 917
PTL+G+ IP GTQ+G++FRLRGKG+ +RS GDL+ V +ETP L++ QK+LL
Sbjct: 286 PTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNLSDEQKELLE 345
Query: 918 SLETSILEGGFKHNPRTKTVLNKVKNFF 945
S+ EG + +P +K+KNFF
Sbjct: 346 EFAKSLGEGP-EQSP---GFFDKLKNFF 369
|
Length = 371 |
| >gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ | Back alignment and domain information |
|---|
Score = 396 bits (1020), Expect = e-130
Identities = 169/364 (46%), Positives = 216/364 (59%), Gaps = 42/364 (11%)
Query: 578 TEEEIKKMVQ----------SAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYE 627
+EEEIKK + + + AEE + +E I EAYE
Sbjct: 13 SEEEIKKAYRKLAKKYHPDRNKDKEAEE--KFKE--------------------INEAYE 50
Query: 628 VLSDSEKRIIYDQYGHAGIDPNMSGSSA---SAEASNFADAFGDIFGDIFGSNR--DRDN 682
VLSD EKR YDQ+GHAG + G + F D FGDIFGD FG R
Sbjct: 51 VLSDPEKRAQYDQFGHAGFNGGGGGGGGGFNGFDIGFFGD-FGDIFGDFFGGGGGSGRRR 109
Query: 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQ 742
+ G+DLRY+LE+T E+A +G I +P + C++C+G GAK GT P +C TC G
Sbjct: 110 RSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGT 169
Query: 743 GQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENN 798
GQVR QQ GFF QQTCP C G GK+I PC C G GR+K KT+ VKIPAG++
Sbjct: 170 GQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTG 229
Query: 799 MRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAP 858
R+R +G G G NGG NG+LY+ I +KPHK+FERDG+DL+ E+PISF+ A LGGEIE P
Sbjct: 230 QRLRVSGKGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVP 289
Query: 859 TLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRS 918
TL+G IP GTQSG +FRL+GKG+ +R + GDL V +ETP L++ QK+LL
Sbjct: 290 TLDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGNGRGDLLVTVKVETPKNLSKEQKELLEE 349
Query: 919 LETS 922
L +
Sbjct: 350 LAEA 353
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354 |
| >gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia coli HscC and similar proteins | Back alignment and domain information |
|---|
Score = 373 bits (960), Expect = e-122
Identities = 159/383 (41%), Positives = 227/383 (59%), Gaps = 52/383 (13%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IGIDLGTTNS V++ + + ++I N+ G TPSV++ E+GEILVG A+ + +T+P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMK 193
T + KR +G K L ++ ++S+ VLR +K
Sbjct: 61 TAASFKRFMGTD-------KKYRL-----------------GKREFRAEELSSLVLRSLK 96
Query: 194 KTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKS 253
+ AE YLG +TEAVI+VPAYFND QR+ATK AG +AGL+V+R+INEPTAAALA+GL
Sbjct: 97 EDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK 156
Query: 254 GKSDRNIVVYDLGGGTFDVSIIEIAD-VDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
+ +V+DLGGGTFDVS++E+ D V EV ++ GD +LGGEDF + + + L
Sbjct: 157 -DEETKFLVFDLGGGTFDVSVLELFDGV-----MEVRASAGDNYLGGEDFTRALAEAFLK 210
Query: 313 EFNKINGIDLRKDSIA-LQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVH-----L 366
+ +G+D K + L R+ +AERAK LS ++ E++ V L
Sbjct: 211 K----HGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMS-----------VRIEGEEL 255
Query: 367 NLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEF 426
+TR + E + L+ R +P A++DA +K SDI++IILVGG TRMP V++ V
Sbjct: 256 EYTLTREEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRL 315
Query: 427 FGKDPRRDINPDEAVAVGAAIQG 449
FG+ P +NPDE VA+GAAIQ
Sbjct: 316 FGRFPLVHLNPDEVVALGAAIQA 338
|
This subfamily includes Escherichia coli HscC (also called heat shock cognate protein C, Hsc62, or YbeW) and the the putative DnaK-like protein Escherichia coli ECs0689. It belongs to the heat shock protein 70 (Hsp70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, Hsp70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Two genes in the vicinity of the HscC gene code for potential cochaperones: J-domain containing proteins, DjlB/YbeS and DjlC/YbeV. HscC and its co-chaperone partners may play a role in the SOS DNA damage response. HscC does not appear to require a NEF. Length = 339 |
| >gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Score = 363 bits (932), Expect = e-114
Identities = 209/564 (37%), Positives = 310/564 (54%), Gaps = 45/564 (7%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
+GID GTTNS ++I + KVI++ + P+ I + N +G
Sbjct: 22 VGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNN-FTIGN----------NK 70
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMK 193
+ + KRL G+ E + + + ++ + ++ K+L P+I+AE+ +K
Sbjct: 71 GLRSIKRLFGKTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYLK 130
Query: 194 KTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKS 253
AE+ L IT+AVITVPA+FNDA R A +IAG EV R+I EPTAAA A+GL+K+
Sbjct: 131 NQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNKN 190
Query: 254 GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDE 313
K +VYDLGGGTFDVSI+ I E F+V++TNGD LGG D D I Y+ ++
Sbjct: 191 QKG--CYLVYDLGGGTFDVSILNIQ----EGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244
Query: 314 FNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRA 373
F DL LQ A++AK L+ + N+ I +
Sbjct: 245 F------DLPNSIDTLQL----AKKAKETLTYKDSFNND--------------NISINKQ 280
Query: 374 KLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR 433
LE L+ L+ RTI + ++ AG +I+ +ILVGG TR+P +++++ + F D
Sbjct: 281 TLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS 338
Query: 434 DINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFS 493
DI+PD+AV GAA+Q L + LL+DV PLSLG+E GGI+ K+I +NT IP
Sbjct: 339 DIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 494 QVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGI 553
+ F+T DNQ + + QGEREM + + L F L+G+PP G + EVTF IDA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 554 LHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLI 613
L V+A +K + + I +K N G+ + EI M+++A NA+ D R L E+ E+LI
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALI 518
Query: 614 HSTKKSLKIKEAYEVLSDSEKRII 637
+ +++ I E +LS+SE II
Sbjct: 519 FNIERA--IAELTTLLSESEISII 540
|
Length = 595 |
| >gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 335 bits (861), Expect = e-107
Identities = 144/330 (43%), Positives = 199/330 (60%), Gaps = 11/330 (3%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFG--DIFGDIFGSNRD 679
I EAYEVLSD +KR YDQ+GHA PN +F FG DIF FG
Sbjct: 49 ISEAYEVLSDDQKRAQYDQFGHA--GPNQGFGGGGFGGGDFGGGFGFEDIFSSFFGGGGR 106
Query: 680 RDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTC 739
R + N G DL+Y + +T E+A +G I +P + C +C+G+GAK GTS +C C
Sbjct: 107 RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHC 166
Query: 740 SGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGI 795
G GQV ++Q G +QTCP C G G+ I C C+G G++++ K + VKIPAG+
Sbjct: 167 GGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGV 226
Query: 796 ENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEI 855
+N +IR +G GEPG+NGG G+LY+ ++PH+ FERDGDD++ EMP++F+ AALG EI
Sbjct: 227 DNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEI 286
Query: 856 EAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKL 915
E PTL+GK IP GTQ+G FRL+GKG+ N+R GD + V + TP +LT+ QK+L
Sbjct: 287 EVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKEL 346
Query: 916 LRSLETSILEGGFKHNPRTKTVLNKVKNFF 945
LR G + + + + +K K F
Sbjct: 347 LREFAEL---SGEEIDEQPSSFFDKAKRAF 373
|
Length = 376 |
| >gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-105
Identities = 158/340 (46%), Positives = 206/340 (60%), Gaps = 19/340 (5%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS-----------ASAEASNFADAFGDI 669
+I EAYE+LSD +KR YDQ+GHA DP G + F D F DI
Sbjct: 50 EINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQGGFGQGGFGGGGFDFDFGGFGDIFEDI 109
Query: 670 FGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729
FGD FG+ R R G D+RY+LE+T E+AA+G I V ++ C C G+GAK
Sbjct: 110 FGDFFGTGRRRAETGP-QKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKP 168
Query: 730 GTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNK 785
G+ P++C C G GQVR +Q G +TC +C G GK+I PC C G GRI+R +
Sbjct: 169 GSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRR 228
Query: 786 TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPIS 845
++V IPAGI++ I G GEPG+ GG NG+LYI I +KPH +F+R+G +++ EMPI+
Sbjct: 229 KIKVNIPAGIDDGQMITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPIT 288
Query: 846 FSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETP 905
F+ AALGGEIE PTL+GK F IPEGTQ+G FRLRGKGI ++R GD V IE P
Sbjct: 289 FTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRGRGRGDQIVKVYIEVP 348
Query: 906 VQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945
+LTE QK+LLR E L G R K+ ++K+ F
Sbjct: 349 KKLTEKQKELLREFEK--LSGEEGTESR-KSFFQRMKDAF 385
|
Length = 386 |
| >gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 329 bits (844), Expect = e-104
Identities = 157/363 (43%), Positives = 223/363 (61%), Gaps = 21/363 (5%)
Query: 590 EANAEE-DKRLRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644
+A+ EE K R+LA RN G+ + + + EAYEVLSD +KR IYDQYGH
Sbjct: 15 DASEEEIKKSYRKLAMKYHPDRNPGDK--EAEELFKEAAEAYEVLSDPKKRGIYDQYGHE 72
Query: 645 GIDPNMSGSSASAEASNFADAFGDIFGDIF--GSNRDRDNNNKGSNGKDLRYNLEITLEQ 702
G+ + +G S + + +FGDIF D F G R + G DLRY+L + +
Sbjct: 73 GL--SGTGFSGFSGFDDIFSSFGDIFEDFFGFGGGRRGRSRTAVRAGADLRYDLTLPFLE 130
Query: 703 AAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQ 762
AA+G IR+ + C+ C+G+G + GTSP +C C G GQV QGFFSI+ TCP+C+
Sbjct: 131 AAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCR 190
Query: 763 GAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIE 822
G GKVI PC C+G GR++ +KT++VKIPAG++ R+R G GE G+ GG G+LY+
Sbjct: 191 GMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVF 250
Query: 823 IHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRG 882
+ ++PH+ FERDG+D+H ++PISF AALG +IE PTL G+ IP+GTQ G IFR +G
Sbjct: 251 LTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKG 310
Query: 883 KGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVK 942
KGI ++R GD V ++ P +LT+ Q++LL E + LE + + NK++
Sbjct: 311 KGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELL--TEFARLES--------EKIGNKLR 360
Query: 943 NFF 945
N F
Sbjct: 361 NLF 363
|
Length = 366 |
| >gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4 and similar proteins | Back alignment and domain information |
|---|
Score = 320 bits (822), Expect = e-101
Identities = 148/388 (38%), Positives = 232/388 (59%), Gaps = 17/388 (4%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
+GID G NS V++ V+ N R TPS++++ E + L+G AK QA++N KN
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEK-QRLIGEAAKNQAISNFKN 61
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR--GKK--LAPPQISAEVL 189
T+ KRLIGRKF++ EVQK++ +P+K+V+ +G I V G++ +P Q+ A +L
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
K+K+ AE L G++T+ VI+VP+YF DAQR+A DA +IAGL R++NE TA ALA+G
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYG 181
Query: 250 LDKSGKSD----RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR 305
+ K+ + RN+ D+G + VSI+ + + +VLST D LGG DFD+
Sbjct: 182 IYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFN----KGKLKVLSTAFDRNLGGRDFDEA 237
Query: 306 IIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVH 365
+ ++ EF + ID+ + A R+ A+ E+ K LS++ + +N + M +
Sbjct: 238 LFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTEAPLNIECL-MED---KD 293
Query: 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKE 425
++ KI R + E L L+ R EP A+ +AG+ DI+ + +VGG TR+P V+E + +
Sbjct: 294 VSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAK 353
Query: 426 FFGKDPRRDINPDEAVAVGAAIQGSVLS 453
FGK+ +N DEAVA G A+Q ++LS
Sbjct: 354 VFGKELSTTLNADEAVARGCALQCAMLS 381
|
This subgroup includes the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), Saccharomyces cerevisiae Sse1p and Sse2p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 381 |
| >gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = e-100
Identities = 148/323 (45%), Positives = 197/323 (60%), Gaps = 12/323 (3%)
Query: 624 EAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFG-SNRDRDN 682
EAYEVL D+EKR YD++GHAG++ N S+ F+ F DIFGD+FG S
Sbjct: 52 EAYEVLRDAEKRARYDRFGHAGVNGNGGFGGFSSAEDIFS-HFSDIFGDLFGFSGGGSRR 110
Query: 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQ 742
+ G DLRYNL ++ QAA G ++R+P C C G+GA GTSP +C C G
Sbjct: 111 GPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGS 170
Query: 743 GQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIR 802
GQVR QGFF I CP C+G G+VI HPC C G G +++ + L+V+IPAG++ R+R
Sbjct: 171 GQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLR 230
Query: 803 STGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNG 862
G GEPG++GG G+LY+ I ++ K+F+R G DL ISF AALG IE PTL+
Sbjct: 231 LRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDD 290
Query: 863 KAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETS 922
IP+GTQSG++FRLRGKG+ + SS GDL V++ TP +LT+ Q++LLR E +
Sbjct: 291 PVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLREFE-A 349
Query: 923 ILEGGFKHNPRTKTVLNKVKNFF 945
+ E L KVK FF
Sbjct: 350 LEEE---------KPLEKVKKFF 363
|
Length = 373 |
| >gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 304 bits (780), Expect = 7e-95
Identities = 137/337 (40%), Positives = 183/337 (54%), Gaps = 11/337 (3%)
Query: 617 KKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA----EASNFADAFGDIFGD 672
+K +++EAYE LSD +KR YDQYG AG + G + + F F DIF
Sbjct: 44 EKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAGGFGGFDGSGGFGG-FEDIFSS 102
Query: 673 IFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTS 732
FG R N N G DL+Y + + E+A +G + C +C G+GAK GTS
Sbjct: 103 FFGGGGARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTS 162
Query: 733 PISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLE 788
P++C C G G + + G Q TC C G GK I PC C+G G K+ T+
Sbjct: 163 PVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVS 222
Query: 789 VKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFST 848
VKIPAG+E +IR G GE G NGG G+LY+ ++P K FERDG ++Y +PISF
Sbjct: 223 VKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQ 282
Query: 849 AALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQL 908
AALG +E PT++G IP GTQ+GK FRLRGKG +R GD V I TP +L
Sbjct: 283 AALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKL 342
Query: 909 TEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945
+ QK+ L++ + G NP+ K +KVK+ F
Sbjct: 343 NDAQKEALKAFAKA--SGEKDVNPKKKGFFDKVKDAF 377
|
Length = 380 |
| >gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 299 bits (767), Expect = 4e-93
Identities = 144/330 (43%), Positives = 194/330 (58%), Gaps = 8/330 (2%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDR 680
+I EAY VLSD+EKR YD++GHAGID S A +F FGDIF FG R
Sbjct: 49 EISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGA-DFGG-FGDIFEMFFGGGGRR 106
Query: 681 DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCS 740
G DLRY+L ITLE+AA+G I VP + C +C G GAK GTSP C TC
Sbjct: 107 GRMGP-RRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCG 165
Query: 741 GQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIE 796
G GQV + G F TC C G G+VI PC C+G G++++ + + V +PAG +
Sbjct: 166 GTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGAD 225
Query: 797 NNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIE 856
+ +R++ +G GE G G +G+LYI +H+K H FER GDD+ E+PISF+ AALG +I
Sbjct: 226 SGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIM 285
Query: 857 APTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
PTL GK IP GTQ+ +FRL+ KG+ + GD V ++TP +LT+ QK+LL
Sbjct: 286 VPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKELL 345
Query: 917 RSLE-TSILEGGFKHNPRTKTVLNKVKNFF 945
R + S + K + K + +KVK+ F
Sbjct: 346 REFDELSNGKNPSKAGKKKKGIFDKVKDAF 375
|
Length = 377 |
| >gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13 and similar proteins | Back alignment and domain information |
|---|
Score = 299 bits (766), Expect = 2e-92
Identities = 145/392 (36%), Positives = 231/392 (58%), Gaps = 18/392 (4%)
Query: 72 KIIGIDLGTTNSCVSIIEG--SQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
KIIGIDLGTT S V + + + +I + G ++ PSV+A+ +LVG A QA
Sbjct: 21 KIIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGT-VLVGYKAVEQAEH 79
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYK-IVKADNGDAWISVRG---KKLAPPQIS 185
NP+NTIY AKR IG+ F ++E++ + +K + + NG + SV K + P +I
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAA 245
+ ++ K++K AE YLG + +AVI+VPA F++ QR AT A +AGLEV R+INEPTAAA
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 246 LAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR 305
LA+GL K + N++V DLGGGT DVS++ F + G+ LGG+DF+QR
Sbjct: 200 LAYGLHKK-QDVFNVLVVDLGGGTLDVSLLNKQG----GMFLTRAMAGNNRLGGQDFNQR 254
Query: 306 IIDYILDEFNKING--IDLRKDSIALQRIKASAERAKIELSSSKQTEINEP-YIAMSNGA 362
++ Y+ + + G D ++D +QR++ + E AKI L+ T I+ + +
Sbjct: 255 LLQYLYQKIYEKYGKVPDNKED---IQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGES 311
Query: 363 PVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEK 422
V ++TR + E L ++L + + P + + + ++++I+LVGG TR+P++++
Sbjct: 312 IVKFEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQV 371
Query: 423 VKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG 454
+ FFGKDP ++P+ AV G AIQ ++ G
Sbjct: 372 IGRFFGKDPNTSVDPELAVVTGVAIQAGIIGG 403
|
Human HSPA13 (also called 70-kDa heat shock protein 13, STCH, "stress 70 protein chaperone, microsome-associated, 60kD", "stress 70 protein chaperone, microsome-associated, 60kDa"; the gene encoding HSPA13 maps to 21q11.1) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). STCH contains an NBD but lacks an SBD. STCH may function to regulate cell proliferation and survival, and modulate the TRAIL-mediated cell death pathway. The HSPA13 gene is a candidate stomach cancer susceptibility gene; a mutation in the NBD coding region of HSPA13 has been identified in stomach cancer cells. The NBD of HSPA13 interacts with the ubiquitin-like proteins Chap1 and Chap2, implicating HSPA13 in regulating cell cycle and cell death events. HSPA13 is induced by the Ca2+ ionophore A23187. Length = 417 |
| >gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 292 bits (748), Expect = 2e-90
Identities = 143/340 (42%), Positives = 204/340 (60%), Gaps = 5/340 (1%)
Query: 586 VQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLK-IKEAYEVLSDSEKRIIYDQYGHA 644
V + A+ K +LA+ + + +K K I AY+VL D +KR YD++GH
Sbjct: 11 VSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHD 70
Query: 645 GIDPNMS---GSSASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLE 701
S G + + D FGD F D G +R + G DL+YNL I LE
Sbjct: 71 AFQNQQSRGGGGNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLE 130
Query: 702 QAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKC 761
+A +G +I S C +C+G+G++KG + +C CSG G RMQQGFF+I+Q C KC
Sbjct: 131 EAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVGATRMQQGFFTIEQACHKC 190
Query: 762 QGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYI 821
QG G++I +PC C+G+GR + + L V IPAG+EN RIR TG GE G+ GG++G+LY+
Sbjct: 191 QGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGNSGDLYV 250
Query: 822 EIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLN-GKAFFVIPEGTQSGKIFRL 880
+I IKPH +++ DG +LH ++PISF AALGGEIE P + GK IP GTQ+G RL
Sbjct: 251 DIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRL 310
Query: 881 RGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLE 920
R KG+ +RS+I GD+ H+ +E P L++ Q++LL +
Sbjct: 311 RSKGMSKMRSTIRGDMLTHIHVEVPKNLSKRQRELLEEFK 350
|
Length = 372 |
| >gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 276 bits (708), Expect = 1e-84
Identities = 135/313 (43%), Positives = 183/313 (58%), Gaps = 14/313 (4%)
Query: 615 STKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA--EASNFAD---AFGDI 669
+ +K +I EAY VLSD EKR YDQ+GHAG+D G S NF D FG
Sbjct: 43 AEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD----GFSQEDIFNNINFEDIFQGFGFG 98
Query: 670 FGDIFGSNRDRDNNNKGSN-GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAK 728
G+IF + G G D+ +EITLE+AA G I+V C C G+ A+
Sbjct: 99 IGNIFDMFGFGGGSRHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAE 158
Query: 729 KGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRN 784
G+ +C TC G GQV+ + G TCP CQG GK++ PC +C+G G ++
Sbjct: 159 PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRET 218
Query: 785 KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPI 844
KT+ VKIPAG+E R+R +G GE G GG G+LY+ I +KPHK+F R+G +L+YE PI
Sbjct: 219 KTISVKIPAGVETGSRLRVSGEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPI 278
Query: 845 SFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIET 904
SF AALG ++ PT++G IP GTQSG FRL+G G+ ++R S G+L+ V +
Sbjct: 279 SFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWSGKGNLYVKVKVVV 338
Query: 905 PVQLTEYQKKLLR 917
P +L+ QK+LLR
Sbjct: 339 PKKLSPKQKELLR 351
|
Length = 378 |
| >gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 6e-84
Identities = 152/345 (44%), Positives = 206/345 (59%), Gaps = 22/345 (6%)
Query: 588 SAEANAEEDKR-LRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S AN EE K R+LA +N G S +K + EAYE+L D +KR YDQ+G
Sbjct: 13 SKSANDEEIKSAYRKLAIKYHPDKNKGNK--ESEEKFKEATEAYEILRDPKKRQAYDQFG 70
Query: 643 HAGIDPNMSGSSASAEASNFADAFGD---IFGDIFGSNRD-------RDNNNKGSNGKDL 692
AG++ G A ++F+D FGD IFGD FG R R +GS DL
Sbjct: 71 KAGVNAGAGGFGQGA-YTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGS---DL 126
Query: 693 RYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFF 752
RYNLE++LE AA G I +P + C C G+GA KG+SP +C C G GQ+R QGFF
Sbjct: 127 RYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSGQIRRTQGFF 186
Query: 753 SIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN 812
S+ TCP C+G G VI +PC C G G ++ +T+ +KIP G+E R++ +G GE G N
Sbjct: 187 SVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPN 246
Query: 813 GGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEG 871
GG +G+LY+ HIK H++FER G+DL IS + A LG EIE PT++GK A IPEG
Sbjct: 247 GGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEG 306
Query: 872 TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
T+SG++FRL+G G+ + + GD V IE P ++T Q++L+
Sbjct: 307 TESGQVFRLKGHGMPYLGAYGKGDQHVIVKIEIPKKITRRQRELI 351
|
Length = 372 |
| >gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 272 bits (696), Expect = 7e-83
Identities = 134/348 (38%), Positives = 200/348 (57%), Gaps = 22/348 (6%)
Query: 586 VQSAEANAEEDKRLRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQY 641
++ ++ E K R+LA +N G + +K +I EAY+VLSD +K+ YDQ+
Sbjct: 12 LEKGASDDEIKKAFRKLAIKYHPDKNKGNK--EAEEKFKEINEAYQVLSDPQKKAQYDQF 69
Query: 642 GHAGIDPNMSGSSAS--------AEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLR 693
G A D N +G S ++ F D F FG FGS+ R N + G D+
Sbjct: 70 GTA--DFNGAGGFGSGGFGGFDFSDMGGFGDIFDSFFGGGFGSSSRRRNGPQ--RGADIE 125
Query: 694 YNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ---- 749
Y + +T E+A +G I V + C++C G GAK GTSP +C C G GQ+R+Q+
Sbjct: 126 YTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTGQIRVQRNTPL 185
Query: 750 GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809
G F TC KC G+GKVI PC C+G G++++N+ ++V +PAG++ I G GE
Sbjct: 186 GSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEH 245
Query: 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIP 869
G NGG G+LYI I + PHK F+R G D++ + ISF+ AALG EI+ PT++G+ + +P
Sbjct: 246 GKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVP 305
Query: 870 EGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLR 917
GTQ G +FRL+GKG+ + S+ G+ + V ++ P +L QK+ L
Sbjct: 306 AGTQPGTVFRLKGKGVPRVNSTGRGNQYVTVIVDIPKKLNSKQKEALT 353
|
Length = 380 |
| >gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 271 bits (695), Expect = 7e-83
Identities = 138/329 (41%), Positives = 197/329 (59%), Gaps = 12/329 (3%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDR 680
++KEAY+ LSD +K+ YDQ+GH DPN A +F F DIF FG R
Sbjct: 48 EVKEAYDTLSDPQKKAHYDQFGHT--DPNQGFGGGGA--GDF-GGFSDIFDMFFGGGGGR 102
Query: 681 DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCS 740
N N G DL+Y + + ++A +G T I +P + C +C+G+GAK GT P +C C
Sbjct: 103 RNPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCG 162
Query: 741 GQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIE 796
G GQ+ ++Q G ++ C C+G GK+I C C G G++++ K + VK+PAGI+
Sbjct: 163 GSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGID 222
Query: 797 NNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIE 856
+ ++R +G GE G+NGG G+LY+ ++KPH+ FERDGDD++ EMP++F ALG EIE
Sbjct: 223 HGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIE 282
Query: 857 APTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
PTLNGK IP GTQ+G FRLRGKG+ N+ GD V + TP LTE +K+L+
Sbjct: 283 VPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKELM 342
Query: 917 RSLETSILEGGFKHNPRTKTVLNKVKNFF 945
R E + + GG + + + KVK F
Sbjct: 343 R--EFAGMSGG-RPDEQNDGFFAKVKRAF 368
|
Length = 371 |
| >gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1 and similar proteins | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 3e-82
Identities = 127/393 (32%), Positives = 215/393 (54%), Gaps = 23/393 (5%)
Query: 74 IGIDLGTTNSCVSIIE-GSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
+GIDLG+ V++++ G +++ N E R TPS +A++ GE L G+ A A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFK-GGERLFGSDASSLAARFPQ 59
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR---GKKLAPPQISAEVL 189
K L+G+ ++ V S P + D ++ + G++ + ++ A +L
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 190 RKMKKTAEDYLGGE-ITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
KK AE++ + + VITVP YF AQRQA DA +AGL V ++N+ TAAAL +
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 249 GLDKSGKSDR--NIVVYDLGGGTFDVSIIEIADV------DGEKQFEVLSTNGDTFLGGE 300
LD+ ++++ ++ YD+G G+ +++E + V Q EVL D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 301 DFDQRIIDYILDEFNKING--IDLRKDSIALQRIKASAERAKIELSSSKQTEIN-EPYIA 357
+FD R+ D++ EF + + +D+R + A+ ++ A RAK LS++ + ++ E +
Sbjct: 240 EFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIE---S 296
Query: 358 MSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMP 417
+ + + KITRA+ E L +L R + P + A++ AG+ + DI+ + L+GG TR+P
Sbjct: 297 LYDD--IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVP 354
Query: 418 KVQEKVKEFFGKDP-RRDINPDEAVAVGAAIQG 449
KVQE++ E GK + +N DEA A+GAA
Sbjct: 355 KVQEELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
|
This subgroup includes human HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian HYOU1 functions as a nucleotide exchange factor (NEF) for HSPA5 (alos known as BiP, Grp78 or HspA5) and may also function as a HSPA5-independent chaperone. S. cerevisiae Lhs1p, does not have a detectable endogenous ATPase activity like canonical HSP70s, but functions as a NEF for Kar2p; it's interaction with Kar2p is stimulated by nucleotide-binding. In addition, Lhs1p has a nucleotide-independent holdase activity that prevents heat-induced aggregation of proteins in vitro. This subgroup belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as NEFs, to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 388 |
| >gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 267 bits (684), Expect = 6e-81
Identities = 144/382 (37%), Positives = 208/382 (54%), Gaps = 29/382 (7%)
Query: 588 SAEANAEEDKR-LRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S A+ EE K+ R+LA +N G++ + K+ ++ EAYEVLSD++KR YD+YG
Sbjct: 10 SKTASPEEIKKAYRKLAVKYHPDKNPGDA--EAEKRFKEVSEAYEVLSDAQKRESYDRYG 67
Query: 643 HAGIDPNMSGSSASAEAS------NFADAFGDIFG-------DIFGSNRD----RDNNNK 685
G G + + F AFG FG +FG + R
Sbjct: 68 KDGPFAGAGGFGGAGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAG 127
Query: 686 GSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQV 745
G + ++ ++ E+AA G + V + C +C G+GA C C G GQV
Sbjct: 128 ARQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQV 187
Query: 746 RMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTG 805
+GFFS+ TCP+C G G+VI PC C G GRIK +++ V IPAG+++ MR++ G
Sbjct: 188 VQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEG 247
Query: 806 NGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTL--NGK 863
G+ G NG G+LY+ I ++PH VFER GDDL E+PI F AALG + E PTL G
Sbjct: 248 YGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGT 307
Query: 864 AFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923
IPEG QSG I ++RG+G N+ GDL +++ETP L+E QK+LLR + +
Sbjct: 308 CRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLR--QFAA 365
Query: 924 LEGGFKHNPRTKTVLNKVKNFF 945
E ++ P+ ++ L+K+K FF
Sbjct: 366 TEKA-ENFPKKRSFLDKIKGFF 386
|
Length = 391 |
| >gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 261 bits (670), Expect = 4e-79
Identities = 130/354 (36%), Positives = 181/354 (51%), Gaps = 30/354 (8%)
Query: 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKR 635
++ EIK+ + K REL N E + +K +I AYEVLSD EKR
Sbjct: 14 NASDAEIKRAYR---------KLARELHPDVNPDEE---AQEKFKEISVAYEVLSDPEKR 61
Query: 636 IIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIF-----GSNRDRDNNNKGSNGK 690
I D G DP SA F FG GD+F G R + G
Sbjct: 62 RIVDLGG----DPL---ESAGGGGGGFGGGFGG-LGDVFEAFFGGGAASRGPRGRVRPGS 113
Query: 691 DLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVR-MQQ 749
D + + LE+ A G + V + +C C+G G + P++C TC G+G+V+ +Q+
Sbjct: 114 DSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQR 173
Query: 750 GFFSIQQT---CPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGN 806
F T CP C+G G+VIP PC +C G GR++ + + VKIPAG+ + MRIR
Sbjct: 174 SFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQ 233
Query: 807 GEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTL-NGKAF 865
GE G GG G+LY+E+H +PH VF RDGDDLH + + AALG + + +G +
Sbjct: 234 GEVGPGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSE 293
Query: 866 FVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
IP GTQ G + LRG+G+ ++RS GDL HV + P +L +LLR L
Sbjct: 294 ITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDIELLREL 347
|
Length = 378 |
| >gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14 and similar proteins | Back alignment and domain information |
|---|
Score = 255 bits (652), Expect = 1e-76
Identities = 123/384 (32%), Positives = 216/384 (56%), Gaps = 18/384 (4%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IG+ G T++C+++ + + V+ N G R TP+V+A+ + I VG AK+ + N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVI-VGLAAKQGRIRNAAN 61
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRG---KKLAPPQISAEVLR 190
TI K+++GR +++ QK+ + KI++ D + K ++P +++ + +
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 191 KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 250
KMK+ A+ LG + + VITVP YF++ Q+ A ++A AG V RII+EP+AAALA+G+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 251 DKSGKSD-RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
+ + ++VY LGG + DV+I+ + G + VL+T+ D LGGE F + + Y
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRV--NSG--MYRVLATSTDDNLGGESFTETLSQY 237
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSS--SKQTEINEPYIAMSNGAPVHLN 367
+ +EF + D+R ++ A+ ++ +AE AK LS+ S + Y +
Sbjct: 238 LANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGID------FQ 291
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
++RA+ E L L + +EP ++ A + +DIN ++L GG +R+PK+Q+ +K+ F
Sbjct: 292 CSVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLF 351
Query: 428 -GKDPRRDINPDEAVAVGAAIQGS 450
+ I+PDE +A+GAA Q
Sbjct: 352 PSVEVLNSISPDEVIAIGAAKQAG 375
|
Human HSPA14 (also known as 70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene encoding HSPA14 maps to 10p13), is ribosome-associated and belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). HSPA14 interacts with the J-protein MPP11 to form the mammalian ribosome-associated complex (mRAC). HSPA14 participates in a pathway along with Nijmegen breakage syndrome 1 (NBS1, also known as p85 or nibrin), heat shock transcription factor 4b (HSF4b), and HSPA4 (belonging to a different subfamily), that induces tumor migration, invasion, and transformation. HSPA14 is a potent T helper cell (Th1) polarizing adjuvant that contributes to antitumor immune responses. Length = 375 |
| >gnl|CDD|237655 PRK14279, PRK14279, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 251 bits (643), Expect = 4e-75
Identities = 131/383 (34%), Positives = 184/383 (48%), Gaps = 38/383 (9%)
Query: 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEK 634
S + EEIKK + K REL N G+ K + EA++VLSD K
Sbjct: 19 SDASAEEIKKAYR---------KLARELHPDANPGDPAAEERFK--AVSEAHDVLSDPAK 67
Query: 635 RIIYDQ---------YGHAGIDPNMS----GSSASAEASNFADAF-----------GDIF 670
R YD+ +G D G+ N D F GD+F
Sbjct: 68 RKEYDETRRLFAGGGFGGRRFDGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLF 127
Query: 671 GDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKG 730
G +F ++ G DL + +AA G +R+ S C +C+G+GA+ G
Sbjct: 128 GGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPG 187
Query: 731 TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVK 790
TSP C TC+G G + QG F + C C+G G +I PC +C G G R +T+ V+
Sbjct: 188 TSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVR 247
Query: 791 IPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAA 850
IP G+E+ RIR G GE GL G +G+LY+ +H++P KVF RDGDDL +P+SF+ A
Sbjct: 248 IPPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELA 307
Query: 851 LGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTE 910
LG + PTL+G +P GT G+I R+RG+G+ RS GDL V + P L
Sbjct: 308 LGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPK-RSGGAGDLLVTVKVAVPPNLDG 366
Query: 911 YQKKLLRSLETSILEGGFKHNPR 933
+ L + + GF +PR
Sbjct: 367 AAAEALEAYAEAERASGF--DPR 387
|
Length = 392 |
| >gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 245 bits (626), Expect = 8e-73
Identities = 117/300 (39%), Positives = 167/300 (55%), Gaps = 16/300 (5%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFAD--------------AF 666
+I EAY+VLSD EKR +YDQ+GHA + S+F F
Sbjct: 47 EINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQGQEGFSDFGGGNIEDILEDVFDIFGF 106
Query: 667 GDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNG 726
GDIFG + R + G+D+ +EI+LE+A G S+ VP + C++C G G
Sbjct: 107 GDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTG 166
Query: 727 AKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKT 786
G+ C TC G G++ + GFF I QTCP C G G V+ PC CNG G + + +T
Sbjct: 167 YDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEG-VLREPCSKCNGRGLVIKKET 225
Query: 787 LEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISF 846
++V+IP G++N ++R G G G GG G+LYI + +KPH +FER GD+L+ ++ I+
Sbjct: 226 IKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITV 285
Query: 847 STAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETP 905
+ A LG E+E P L+GK V IP GT+ G R+ GKG+ ++ S GDL V I+ P
Sbjct: 286 AEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVP 345
|
Length = 382 |
| >gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 1e-72
Identities = 114/311 (36%), Positives = 162/311 (52%), Gaps = 20/311 (6%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADA--FGDIFGDIF----- 674
I AYEVLSD E R YDQ+G AG+ S +A + D F DIF F
Sbjct: 48 INRAYEVLSDPETRARYDQFGEAGV-------SGAAGFPDMGDMGGFADIFETFFSGFGG 100
Query: 675 -GSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733
G R G DLRY+L++ +A +G IR+P + C++C G+GAK GT P
Sbjct: 101 AGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGP 160
Query: 734 ISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEV 789
+C TC G GQVR G F+ CP C G G+VI PC C G G + K L++
Sbjct: 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKI 220
Query: 790 KIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTA 849
IPAG++ R+R +G G+ GL GG G+LY+ + +K F RDG ++ E+ IS+ A
Sbjct: 221 NIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQA 280
Query: 850 ALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNI-RSSIPGDLFCHVTIETPVQL 908
LG +E T++G IP GTQ + L KG+ + GD V ++ P ++
Sbjct: 281 ILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRI 340
Query: 909 TEYQKKLLRSL 919
++ +++LL L
Sbjct: 341 SDEERELLEKL 351
|
Length = 374 |
| >gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 234 bits (598), Expect = 8e-69
Identities = 132/377 (35%), Positives = 190/377 (50%), Gaps = 40/377 (10%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
TE EIKK + K RE N G++ + ++ +I EAY+VLSD +KR
Sbjct: 22 TEAEIKKAYR---------KLAREYHPDANKGDA--KAEERFKEISEAYDVLSDEKKRKE 70
Query: 638 YDQ----YGHAGIDPNMSGSSASAEASNFADAFG----------------DIFGDIFGSN 677
YD+ +G+ G P G + D FG D+FG +F
Sbjct: 71 YDEARSLFGNGGFRPGPGGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRG 130
Query: 678 RDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCF 737
R +G+ D+ + ++ +A G +R+ S C +C G GAK GT+P C
Sbjct: 131 GRRTQPRRGA---DVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCP 187
Query: 738 TCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIEN 797
TCSG GQV G FS+ + CP C+G G + PCL C G GR K ++T++V+IPAG+ +
Sbjct: 188 TCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAGVSD 247
Query: 798 NMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEA 857
RIR G G PG GG G+LY+ +H+ PH VF R GD+L +P++F AALG E+
Sbjct: 248 GQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRV 307
Query: 858 PTLNGKAFFV-IPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
PTL G V +P GT +G++ R+RGKG + GDL V + P L+ ++ L
Sbjct: 308 PTLGGPPVTVKLPPGTPNGRVLRVRGKGA-VRKDGTRGDLLVTVEVAVPKDLSGKAREAL 366
Query: 917 RSLETSILEGGFKHNPR 933
+ E +PR
Sbjct: 367 EAFR----EATADEDPR 379
|
Length = 389 |
| >gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 232 bits (593), Expect = 1e-68
Identities = 125/307 (40%), Positives = 182/307 (59%), Gaps = 4/307 (1%)
Query: 624 EAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAF---GDIFGDIFGSNRDR 680
EAYEVL D KR YD++GH + S S F+D F GDIF F NR +
Sbjct: 51 EAYEVLIDDNKRAQYDRFGHTAFEGGGGFEGFSGGFSGFSDIFEDFGDIFDSFFTGNRGQ 110
Query: 681 DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCS 740
D N K G+DL Y +EI+LE A G+ +I + +C+SC G ++KGTSP C C+
Sbjct: 111 DKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCN 170
Query: 741 GQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMR 800
G G+V GFF + TCPKC G GK+I +PC C G G +K+ +T+E+KIPAGI++N +
Sbjct: 171 GSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQ 230
Query: 801 IRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTL 860
I+ G G + G+LYI+I IKPHK+F+R+G DL+ +PISF+ AALG EI+ T+
Sbjct: 231 IKMRGKGSVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTI 290
Query: 861 NGKAFFV-IPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
K + IP+GT++ + ++ +G+ + + G+L + I+TP L KLL +L
Sbjct: 291 ASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFGNLILIIKIKTPKNLNSNAIKLLENL 350
Query: 920 ETSILEG 926
+ +
Sbjct: 351 SKELKDI 357
|
Length = 365 |
| >gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1 | Back alignment and domain information |
|---|
Score = 231 bits (590), Expect = 6e-68
Identities = 128/390 (32%), Positives = 211/390 (54%), Gaps = 17/390 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
++G D+G + +++ + + N R TPSVI++ +G AK Q +T+
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRT-IGVAAKNQQITHAN 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV----RGKKLAPPQISAEV 188
NT+ KR GR FN+ VQK+ + Y +V NG + V + QI+A +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
L K+K+TAE+ L +T+ VI+VP++F DA+R++ DA +I GL R++N+ TA AL +
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 249 GLDK-----SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
G+ K + R +V D+G F VS + + +VL T D FLGG++FD
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAF----NKGKLKVLGTAFDPFLGGKNFD 236
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
++++++ EF +D + AL R+ E+ K +L SS T++ N
Sbjct: 237 EKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLK-KLMSSNSTDLPLNIECFMNDKD 295
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
V + K+ R++ E L +L+ R P ++ +KV D++ + +VGG TR+P V+E++
Sbjct: 296 V--SGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERI 353
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453
+FFGKD +N DEAVA G A+Q ++LS
Sbjct: 354 AKFFGKDVSTTLNADEAVARGCALQCAILS 383
|
Human HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3) suppresses the aggregation of denatured proteins caused by heat shock in vitro, and may substitute for HSP70 family proteins to suppress the aggregation of denatured proteins in cells under severe stress. It reduces the protein aggregation and cytotoxicity associated with Polyglutamine (PolyQ) diseases, including Huntington's disease, which are a group of inherited neurodegenerative disorders sharing the characteristic feature of having insoluble protein aggregates in neurons. The expression of HSPH1 is elevated in various malignant tumors, including malignant melanoma, and there is a direct correlation between HSPH1 expression and B-cell non-Hodgkin lymphomas (B-NHLs) aggressiveness and proliferation. HSPH1 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 1e-66
Identities = 121/354 (34%), Positives = 190/354 (53%), Gaps = 22/354 (6%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
T+EEIK+ + + ++E R+ E+ + +K +I+EAYEVLSD +KR +
Sbjct: 17 TQEEIKRAYK---------RLVKEWHPDRHP-ENRKEAEQKFKEIQEAYEVLSDPQKRAM 66
Query: 638 YDQYGHAGIDPNMSGSSASAEA-----SNFADAFG-DIFGDIFGSNRDRDNN-NKGSNGK 690
YD++G+ G P + + +F + F DIF FG R ++ G+
Sbjct: 67 YDRFGYVGEQPPYQETESGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGE 126
Query: 691 DLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ- 749
D+RY +E+TL G + ++ C C G G + G+ ++C C G G++R ++
Sbjct: 127 DIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIREERR 186
Query: 750 ---GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGN 806
G F ++TC +C G GK+ C +C G GRI+R VKIPAG+E+ +R TG
Sbjct: 187 SFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGG 246
Query: 807 GEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFF 866
G G GG G+LY+ + ++P F+R G DL Y++ I + A LG +E P G
Sbjct: 247 GNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTM 306
Query: 867 V-IPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
+ IP GTQ +FRL+GKG+ N+R GDL +V +E P +L+ ++KLL+ L
Sbjct: 307 LKIPPGTQPETVFRLKGKGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKEL 360
|
Length = 369 |
| >gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 226 bits (578), Expect = 3e-66
Identities = 127/340 (37%), Positives = 176/340 (51%), Gaps = 19/340 (5%)
Query: 588 SAEANAEEDKR-LRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S A+A+E K R+LA RN + + +K +I EAY VLSD+EKR YD++G
Sbjct: 11 SRTASADEIKSAYRKLALKYHPDRNKEKG---AAEKFAQINEAYAVLSDAEKRAHYDRFG 67
Query: 643 HAGIDPNMSGSSASAEASNFADAFGDIFGD-IFGSNRDRDNNNKGSNGKDLRYNLEITLE 701
A G + D F +FG FG R R + G DL ITLE
Sbjct: 68 TAPGAGMPGGDPFGGMGFDPMDIFEQLFGGAGFGGGRGR---RGPARGDDLETEARITLE 124
Query: 702 QAAYGFNTSIRVPSWDICKSCYGNGAKKGTS-PISCFTCSGQGQVRMQ-QGFFSI---QQ 756
QA G + V C+ C+G+ + G P +C TC G G VR Q + F + QQ
Sbjct: 125 QARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQ 184
Query: 757 TCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSN 816
CP C+G G++I PC C G GR + +T++VK+P GI+ RIR G G G G N
Sbjct: 185 PCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGG--N 242
Query: 817 GNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGK 876
G+LY+ I ++PH R+ + L YE I F+ AALGG+I PTL+G + GTQ G
Sbjct: 243 GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGD 302
Query: 877 IFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
+ RLRG+G+ ++ + GDL I P QL+ ++ L
Sbjct: 303 LHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREAL 342
|
Length = 371 |
| >gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 224 bits (572), Expect = 3e-65
Identities = 126/339 (37%), Positives = 176/339 (51%), Gaps = 23/339 (6%)
Query: 624 EAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFAD---AFGDIFGDI------- 673
EAY+VLSD +KR YDQ+GHAG+ G S E + D FGDIFG
Sbjct: 53 EAYDVLSDPDKRSRYDQFGHAGVGGAAGGGGFSGEGMSMEDIFSMFGDIFGGHGGGFGGF 112
Query: 674 --FGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT 731
FG + +GS DLR +++ L++ + G +V + C C+G GA+
Sbjct: 113 GGFGGGGSQQRVFRGS---DLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNN 169
Query: 732 SPISCFTCSGQGQV-RMQQGFFSIQQT---CPKCQGAGKVIPHPCLDCNGIGRIKRNKTL 787
+C TC G G V R+Q QT CP C G GK+I C C G G + + +
Sbjct: 170 GSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVI 229
Query: 788 EVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFS 847
VKIPAG+ M++ G G G +GG NG+L + I +PH RD +DL Y + +S
Sbjct: 230 TVKIPAGVAEGMQLSMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVP 289
Query: 848 TAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQ 907
TAALGG +E PT++GKA I GTQ GK+ RLR KG+ ++ GDL +V++ P
Sbjct: 290 TAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPSVNGYGTGDLLVNVSVYIPET 349
Query: 908 LTEYQKKLLRSLETSILEGGFKHNPRTK-TVLNKVKNFF 945
L++ +K+ L +E S FK K + K K+FF
Sbjct: 350 LSKEEKQTLEKMENS---DNFKPTTSIKEKIFKKFKSFF 385
|
Length = 386 |
| >gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L | Back alignment and domain information |
|---|
Score = 221 bits (565), Expect = 2e-64
Identities = 132/390 (33%), Positives = 218/390 (55%), Gaps = 17/390 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
++GIDLG N +++ + I N R TP+ I+ +G AK Q VTN +
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRA-IGNAAKSQIVTNVR 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR----GKKLAPPQISAEV 188
NTI+ K+L GR F++ VQ + +PY++ K NG + VR + A Q++ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
L K+K+T+E+ L + + VI++P++F DA+R++ A ++AGL R++NE TA ALA+
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 249 GLDKSG-----KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
G+ K + RN+V D+G + VS+ + + +VL+T D +LGG +FD
Sbjct: 181 GIYKQDLPALDEKPRNVVFIDMGHSAYQVSVCAF----NKGKLKVLATTFDPYLGGRNFD 236
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+ ++DY DEF I+++++S AL R+ E+ K +L S+ +++ N
Sbjct: 237 EALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLK-KLMSANASDLPLNIECFMNDLD 295
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
V + K+ RA+ E L L+ R P + ++ A ++ DI I +VGG TR+P V+E++
Sbjct: 296 V--SSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQI 353
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453
FF KD +N DEAVA G A+Q ++LS
Sbjct: 354 TSFFLKDISTTLNADEAVARGCALQCAILS 383
|
Human HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28) is expressed ubiquitously and predominantly in the testis. It is required for normal spermatogenesis and plays a role in osmotolerance. HSPA4L belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4 | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 5e-64
Identities = 129/390 (33%), Positives = 213/390 (54%), Gaps = 17/390 (4%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
++GIDLG + V++ + I N R TP+ I++ +GA AK Q ++N K
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRS-IGAAAKSQVISNAK 60
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV----RGKKLAPPQISAEV 188
NT+ KR GR F++ VQ + + Y +V+ G I V + Q++A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
L K+K+TAE L + + V++VP ++ DA+R++ DA +IAGL R++NE TA ALA+
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 249 GLDKSG-----KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303
G+ K + RN+V D+G + VS+ + + +VL+T DT LGG FD
Sbjct: 181 GIYKQDLPALEEKPRNVVFVDMGHSAYQVSVCAF----NKGKLKVLATAFDTTLGGRKFD 236
Query: 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+ +++Y +EF K +D++ AL R+ E+ K +L S+ +++ N
Sbjct: 237 EVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLK-KLMSANASDLPLNIECFMND-- 293
Query: 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKV 423
+ ++ + R K + D+L+ R P R ++ A +K DI + +VGG TR+P V+EK+
Sbjct: 294 IDVSGTMNRGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKI 353
Query: 424 KEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453
+FFGK+ +N DEAVA G A+Q ++LS
Sbjct: 354 SKFFGKEVSTTLNADEAVARGCALQCAILS 383
|
Human HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1) responds to acidic pH stress, is involved in the radioadaptive response, is required for normal spermatogenesis and is overexpressed in hepatocellular carcinoma. It participates in a pathway along with NBS1 (Nijmegen breakage syndrome 1, also known as p85 or nibrin), heat shock transcription factor 4b (HDF4b), and HSPA14 (belonging to a different HSP70 subfamily) that induces tumor migration, invasion, and transformation. HSPA4 expression in sperm was increased in men with oligozoospermia, especially in those with varicocele. HSPA4 belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family. HSP105/110s are believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. Hsp70 chaperone activity is also regulated by J-domain proteins. Length = 383 |
| >gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 1e-63
Identities = 125/356 (35%), Positives = 186/356 (52%), Gaps = 38/356 (10%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSAS--------AEASNFAD---AFGDI 669
++ EAYEVLS+ +KR YDQ+GHAG+ GSSA+ +F D AF D+
Sbjct: 48 EVNEAYEVLSNDDKRRRYDQFGHAGV-----GSSAASGGGPGYGGGGGDFNDIFSAFNDM 102
Query: 670 FG--------------DIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS 715
FG D+FG R + G G DL+ L++TLE+ A G ++++
Sbjct: 103 FGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162
Query: 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVR-----MQQGFFSIQQTCPKCQGAGKVIPH 770
CK C G G+K G + C TC G G+VR M F +I CP C G G+V+
Sbjct: 163 QVPCKECNGTGSKTGATET-CPTCHGSGEVRQASKTMFGQFVNIT-ACPTCGGEGRVVKD 220
Query: 771 PCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKV 830
C C G G + T++V +PAG+++ + G G G GG+ G+L + I KPH++
Sbjct: 221 RCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHEL 280
Query: 831 FERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRS 890
F R+GDD+ Y + +S+ LG ++E PTL+G IP GTQ + R+ GKGI ++R
Sbjct: 281 FVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRG 340
Query: 891 SIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT-KTVLNKVKNFF 945
S GD + V + P +++ K+LL+ L+ S HN + K+ K K+ F
Sbjct: 341 SGRGDQYVRVNVFVPKEVSHQDKELLKELKKSSHISPNAHNDKEEKSFFEKAKDIF 396
|
Length = 397 |
| >gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110 kDa heat shock proteins including HSPA4, HYOU1, and similar proteins | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 3e-62
Identities = 119/384 (30%), Positives = 199/384 (51%), Gaps = 18/384 (4%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
G+DLG NS +++ ++ N R+TPSV+ + L G K + +N KN
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKN 59
Query: 134 TIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR--GKKL--APPQISAEVL 189
T+ KR+IG ++ + +++ K+V+ D+ VR G+K + Q++A +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
K+K T + IT+ I VP ++ + QR DA RIAGL RI+N+ TAA +++G
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 250 LDKS-----GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
+ K+ + R + D+G ++ SI+ + Q +VL T D GG DFD
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFK----KGQLKVLGTACDKHFGGRDFDL 235
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
I ++ DEF ID+R++ A RI +AE+ K LS++ N P+ S V
Sbjct: 236 AITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANT----NAPFSVESVMNDV 291
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
++ +++R +LE LV L+ R EP A+ A + +++ + ++GG TR+P +++ +
Sbjct: 292 DVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSIS 351
Query: 425 EFFGKDPRRDINPDEAVAVGAAIQ 448
E FGK +N DEA+A GAA
Sbjct: 352 EAFGKPLSTTLNQDEAIAKGAAFI 375
|
This subfamily include the human proteins, HSPA4 (also known as 70-kDa heat shock protein 4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat shock protein 4-like, APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to 4q28), and HSPH1 (also known as heat shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1 (also known as human hypoxia up-regulated 1, GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p, Sse2p, and Lhs1p, and a sea urchin sperm receptor. It belongs to the 105/110 kDa heat shock protein (HSP105/110) subfamily of the HSP70-like family, and includes proteins believed to function generally as co-chaperones of HSP70 chaperones, acting as nucleotide exchange factors (NEFs), to remove ADP from their HSP70 chaperone partners during the ATP hydrolysis cycle. HSP70 chaperones assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Like HSP70 chaperones, HSP105/110s have an N-terminal nucleotide-binding domain (NBD) and a C-terminal substrate-binding domain (SBD). For HSP70 chaperones, the nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is also regulated by J-domain proteins. Length = 377 |
| >gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 3e-61
Identities = 126/345 (36%), Positives = 179/345 (51%), Gaps = 22/345 (6%)
Query: 592 NAEED---KRLRELAESRN---HGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645
NA ++ K RELA+ + H + + +K +I EAYEVLSD +KR YDQ G
Sbjct: 14 NASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTG--T 71
Query: 646 IDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGK-------DLRYNLEI 698
+D GS+ + + DIF IFG N D + N + D+ NL+I
Sbjct: 72 VDFGAGGSNFNWDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDI 131
Query: 699 TLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ--QGFFSIQQ 756
+LE A YG I+ +C C G GAK G I+C TC G GQ R+ QGFF +
Sbjct: 132 SLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKL-ITCPTCHGTGQQRIVRGQGFFRMVT 190
Query: 757 --TCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814
TC C G G++ C CNG G + N+ + VKIP G +N+R+R G G+ GG
Sbjct: 191 VTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQS--YGG 248
Query: 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQS 874
G+LY+ + + +R DDL+ + I+F AALGGEIE K IPEGTQ
Sbjct: 249 RTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQP 308
Query: 875 GKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
G++ +++G G+ ++ GDL + +E P +LT QK+L+R
Sbjct: 309 GEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIREF 353
|
Length = 365 |
| >gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of Saccharmomyces cerevisiae Ssz1pp and similar proteins | Back alignment and domain information |
|---|
Score = 212 bits (541), Expect = 6e-61
Identities = 125/399 (31%), Positives = 190/399 (47%), Gaps = 35/399 (8%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPK--VIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTN 130
+IGI+ G T S SI +Q K VI N +G R PS I+Y + G AK Q + N
Sbjct: 2 VIGINFGNTYS--SIACINQGKADVIANEDGERQIPSAISYH-GEQEYHGNQAKAQLIRN 58
Query: 131 PKNTIYAAKRLIGRKFNE-KEVQKDISLMPYKIVKADNGDAWISVRG----KKLAPPQIS 185
KNTI + L+G+ F+E + V G L +++
Sbjct: 59 AKNTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVT 118
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAA 245
LR++K+ AED+LG ++ AV++VP +F+D Q +A A AGL V ++I EP AA
Sbjct: 119 VRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAAL 178
Query: 246 LAFGLDKSGKS---DRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302
LA+ + + DRN+VV D GG DVS+I + + +L+T D LGG+
Sbjct: 179 LAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVR----GGLYTILATAHDPGLGGDTL 234
Query: 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGA 362
D ++ + EF K D R ++ AL +++A +E K LS+S + +A G
Sbjct: 235 DDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCSVESLA--EGI 292
Query: 363 PVHLNLKITRAKLELL---VDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKV 419
H + I R + ELL V + A+ AG+ DI++++LVGG PK+
Sbjct: 293 DFHSS--INRLRFELLASAVFRQFAAFVTS---AVAKAGLDALDIDEVLLVGGTAFTPKL 347
Query: 420 QEKVKEFFGK--------DPRRDINPDEAVAVGAAIQGS 450
+ F + + ++P E VA G AIQ S
Sbjct: 348 ASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQAS 386
|
Saccharomyces cerevisiae Ssz1p (also known as /Pdr13p/YHR064C) belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but rather, function as NEFs for their Hsp70 partners, while other family members function as both chaperones and NEFs. Ssz1 does not function as a chaperone; it facilitates the interaction between the HSP70 Ssb protein and its partner J-domain protein Zuo1 (also known as zuotin) on the ribosome. Ssz1 is found in a stable heterodimer (called RAC, ribosome associated complex) with Zuo1. Zuo1 can only stimulate the ATPase activity of Ssb, when it is in complex with Ssz1. Ssz1 binds ATP but neither nucleotide-binding, hydrolysis, or its SBD, is needed for its in vivo function. Length = 386 |
| >gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 | Back alignment and domain information |
|---|
Score = 187 bits (478), Expect = 4e-55
Identities = 67/129 (51%), Positives = 88/129 (68%)
Query: 780 RIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLH 839
R++ KTL VKIPAG+++ R+R G G+ G NGG G+LY+ I +KPH VF RDG+DL+
Sbjct: 30 RVREKKTLTVKIPAGVDDGQRLRLRGEGDAGPNGGPPGDLYVVIRVKPHPVFRRDGNDLY 89
Query: 840 YEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCH 899
E+PIS + A LGGEIE PTL GK IP GTQ G + RL+GKG+ +R GDL+
Sbjct: 90 CEVPISLTEALLGGEIEVPTLGGKVKLKIPPGTQPGTVLRLKGKGMPRLRGGGRGDLYVE 149
Query: 900 VTIETPVQL 908
V +E P +L
Sbjct: 150 VKVEFPKKL 158
|
The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158 |
| >gnl|CDD|172776 PRK14288, PRK14288, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (496), Expect = 5e-55
Identities = 130/363 (35%), Positives = 194/363 (53%), Gaps = 17/363 (4%)
Query: 591 ANAEEDKR-LRELA----ESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645
+N E K+ R+LA RN G+ + +K I EAY VLSD +KR +YD+YG G
Sbjct: 15 SNQETIKKSYRKLALKYHPDRNAGDK--EAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72
Query: 646 IDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAY 705
+ N +G+S S + S+F + G F D FG K S D +E++ ++A +
Sbjct: 73 L--NQAGASQS-DFSDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVF 129
Query: 706 GFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765
G +I+V +C+SC G GAK +C C+GQGQV M+QGF S QTC CQG G
Sbjct: 130 GCKKTIKVQYQSVCESCDGTGAKDKALE-TCKQCNGQGQVFMRQGFMSFAQTCGACQGKG 188
Query: 766 KVIPHPCLDCNGIGRIKRNKTLEVKIPAGI--ENNMRIRSTGNGEPGLNGGSNGNLYIEI 823
K+I PC C G I +++ ++ IP GI +N M +++ GN G G+LY+E
Sbjct: 189 KIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGN---EYEKGKRGDLYLEA 245
Query: 824 HIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAF-FVIPEGTQSGKIFRLRG 882
+K + F+R+G DL E P+ F+T ALG I+ P+L G IP + + F R
Sbjct: 246 RVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRN 305
Query: 883 KGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVK 942
+G+K+ SS G L + + P L + Q++LL L S G H +T ++K+K
Sbjct: 306 EGVKHPESSYRGSLIVELQVIYPKSLNKEQQELLEKLHASFGYEGEPHKSVLETCISKIK 365
Query: 943 NFF 945
++F
Sbjct: 366 DWF 368
|
Length = 369 |
| >gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 183 bits (466), Expect = 7e-51
Identities = 109/323 (33%), Positives = 170/323 (52%), Gaps = 28/323 (8%)
Query: 618 KSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFAD------------- 664
K ++I EA +VL D +KR YDQ+GHA D +S +SNF D
Sbjct: 45 KMVEINEAADVLLDKDKRKQYDQFGHAAFD------GSSGFSSNFGDFEDLFSNMGSSGF 98
Query: 665 -AFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCY 723
+F +IF D FGSN+ + + + G+ + ++ +T ++ +G + I + C C+
Sbjct: 99 SSFTNIFSDFFGSNKS--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCF 156
Query: 724 GNGAKKGTSPISCFTCSGQGQVRMQQ--GFFSIQQ--TCPKCQGAGKVIPHPCLDCNGIG 779
G+GA+ + C C G G+V +Q+ GFF QQ C C GAGK+I + C +C G G
Sbjct: 157 GSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKG 216
Query: 780 RIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFER-DGDDL 838
+ K +EV IP GI N +I+ + G LN G NG+L I+I++K KVFE + +D+
Sbjct: 217 KYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDI 276
Query: 839 HYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGI-KNIRSSIPGDLF 897
IS+ A LG EI TL+G + +P+ S ++ + KG+ K+I GDL
Sbjct: 277 LMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLI 336
Query: 898 CHVTIETPVQLTEYQKKLLRSLE 920
V I P L++ +K+L+ +
Sbjct: 337 IKVNIVVPKNLSKKEKELIEQIY 359
|
Length = 372 |
| >gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 8e-39
Identities = 99/350 (28%), Positives = 148/350 (42%), Gaps = 88/350 (25%)
Query: 588 SAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647
S E +AE R +E+AE A+EVLSD ++R YDQ D
Sbjct: 37 SKEPDAEA--RFKEVAE--------------------AWEVLSDEQRRAEYDQLWQHRND 74
Query: 648 PNMSGSSASAEASNF-ADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYG 706
P + + +F A+ F DIF IFG + + + G D+ + + LE+
Sbjct: 75 PQFNRQFQHGDGQSFNAEDFDDIFSSIFGQHARQSRQRPAARGHDIEIEVAVFLEETLTE 134
Query: 707 FNTSIR--VPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGA 764
+I +P ++ F I+Q PK
Sbjct: 135 HKRTISYNLPVYNA--------------------------------FGMIEQEIPK---- 158
Query: 765 GKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIH 824
TL VKIPAG+ N RIR G G PG NGG NG+L++ IH
Sbjct: 159 ---------------------TLNVKIPAGVGNGQRIRLKGQGTPGENGGPNGDLWLVIH 197
Query: 825 IKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKG 884
I PH +F+ G DL +P++ AALG ++ PTL IP G+Q+G+ R++GKG
Sbjct: 198 IAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKG 257
Query: 885 IKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT 934
+ + + + GDL+ + I P + E L + L + + F +PR
Sbjct: 258 LVSKKQT--GDLYAVLKIVMPPKPDEKTAALWQQLADA--QSSF--DPRK 301
|
Length = 306 |
| >gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone protein, and related proteins | Back alignment and domain information |
|---|
Score = 143 bits (362), Expect = 1e-36
Identities = 103/445 (23%), Positives = 173/445 (38%), Gaps = 104/445 (23%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-----QENGEILVGAPAKRQAV 128
+GID GT+NS V++ QP+++ G+ T PS + + E+L G A +
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 129 TNPKNTIY--AAKRLIG-RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQIS 185
P + K +G F E + G++L +
Sbjct: 61 EGPGEGRLMRSLKSFLGSSLFRET-----------------------RIFGRRLTFEDLV 97
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQ----RQATKD---AGRIAGLEVKRII 238
A L ++K+ AE LG EI VI P +F QA A R AG +
Sbjct: 98 ARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQ 157
Query: 239 NEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI---ADVDGEKQFEVLSTNGDT 295
EP AAAL + + + ++V D+GGGT D S++ + +++ ++L+ +G
Sbjct: 158 YEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSG-V 214
Query: 296 FLGGEDFDQRIID------------------------YILDEFNKINGI----------- 320
+GG DFD+R+ + + I
Sbjct: 215 RIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRE 274
Query: 321 --DLRKDS---------IALQ------RIKASAERAKIELSSSKQTEINEPYIAMSNGAP 363
+L +D+ I + R+ + E AKI LSS +T I+ ++
Sbjct: 275 LRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------E 328
Query: 364 VHLNLKITRAKLELLVDELITRTIEPC-RIAIKDAGIKVSDINDIILVGGMTRMPKVQEK 422
V L +TRA+ E + + R IE A+ AG+ I+ + L GG + +P V++
Sbjct: 329 VGLEAPVTRAEFEGAIAPDLER-IEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQA 387
Query: 423 VKEFFGKDPRRDINPDEAVAVGAAI 447
F + + +VA G A+
Sbjct: 388 FAARFPAARIVEGDAFGSVASGLAL 412
|
This bacterial subfamily includes the uncharacterized Escherichia coli YegD. It belongs to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. YegD lacks the SBD. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). Some family members are not chaperones but instead, function as NEFs for their Hsp70 partners, other family members function as both chaperones and NEFs. Length = 415 |
| >gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 5e-34
Identities = 109/332 (32%), Positives = 156/332 (46%), Gaps = 38/332 (11%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDR 680
+I AYEVLSD EKR IYD+YG G++ + AS D+F IFG R
Sbjct: 69 EISRAYEVLSDPEKRKIYDEYGEEGLEGGEQPADAS-----------DLFDLIFGGGR-- 115
Query: 681 DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCS 740
G+D+ +L++TLEQ G + + IC +C G+G K + + C C+
Sbjct: 116 -KPGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPK-DAFVDCKLCN 173
Query: 741 GQG-QVRMQQGFFSIQQT---CPKCQGAGKVIPHP--CLDCNGIGRIKRNKTLEVKIPAG 794
GQG +V+++Q I QT C C G GK+IP C +C+G G K K LEV I G
Sbjct: 174 GQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKG 233
Query: 795 IENNMRIRSTGNGEPGLNGGS-NGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGG 853
+ N +I T +GE GN+ ++ KPH F+R+G DL IS A G
Sbjct: 234 VPNQHKI--TFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGF 291
Query: 854 EIEAPTLNGKAFFV-IPEG--TQSGKIFRLRGKGIKNIRSS-IPGDLFCHVTIETPVQ-- 907
L+G+ V P G + G I + +G+ +S G+L+ + PV
Sbjct: 292 VFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRK 351
Query: 908 LTEYQKKLLRSLETSILEGGFKHNPRTKTVLN 939
T +K++L+SL F NP K L
Sbjct: 352 FTNEEKEILKSL--------FPQNPEEKKDLE 375
|
Length = 421 |
| >gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A, HSPA12B and similar proteins | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 2e-28
Identities = 99/427 (23%), Positives = 161/427 (37%), Gaps = 70/427 (16%)
Query: 73 IIGIDLGTTNSCVSI-IEGSQPKVIE--------NSEGARTTPSVIAYQENGEIL-VGAP 122
++GID GTT S V+ S P I G P+ I Y G+++ G
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYE 61
Query: 123 AKRQAVTNPKNTIYAAKRLIGRKF------NEKEVQKDISLMPYKIVKADNGDAWISVRG 176
A+R + L F + ++Q D L P
Sbjct: 62 AER---EYAELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLKP---------------LP 103
Query: 177 KKLAPPQISAEVLRKMKKTAEDYLGGEITEA---------VITVPAYFNDAQRQATKDAG 227
+ A+ LR + + A + L V+TVPA ++DA +QA ++A
Sbjct: 104 PGKTAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAA 163
Query: 228 RIAGLEVKR-------IINEPTAAALAF----GLDKSGKSDRNIVVYDLGGGTFDVSIIE 276
AGL R I+ EP AAAL + + K +V D GGGT D+++ E
Sbjct: 164 IKAGLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYE 223
Query: 277 IADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASA 336
+ V+ + E+ + +G G D+ + + + ++ K +
Sbjct: 224 VTSVEPLRLKELAAGSGG-LCGSTFVDRAFEELLKERLGELFYELPSKSPALWLILMRFF 282
Query: 337 ERAKIEL-SSSKQTEINEPYI-AMSNGAPVHL----NLKITRAKLELLVDELITRTIEPC 390
E K + T I P A+S P LKI+ ++ L D +I I+
Sbjct: 283 ETIKRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIID-- 340
Query: 391 RIAIKD---AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
I++ K + I LVGG P ++ ++KE F R + P + A +
Sbjct: 341 --LIEEQLEQAEKGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQL--AVV 396
Query: 448 QGSVLSG 454
+G+VL G
Sbjct: 397 RGAVLFG 403
|
Human HSPA12A (also known as 70-kDa heat shock protein-12A) and HSPA12B (also known as 70-kDa heat shock protein-12B, chromosome 20 open reading frame 60/C20orf60, dJ1009E24.2) belong to the heat shock protein 70 (HSP70) family of chaperones that assist in protein folding and assembly, and can direct incompetent "client" proteins towards degradation. Typically, HSP70s have a nucleotide-binding domain (NBD) and a substrate-binding domain (SBD). The nucleotide sits in a deep cleft formed between the two lobes of the NBD. The two subdomains of each lobe change conformation between ATP-bound, ADP-bound, and nucleotide-free states. ATP binding opens up the substrate-binding site; substrate-binding increases the rate of ATP hydrolysis. HSP70 chaperone activity is regulated by various co-chaperones: J-domain proteins and nucleotide exchange factors (NEFs). No co-chaperones have yet been identified for HSPA12A or HSPA12B. The gene encoding HSPA12A maps to 10q26.12, a cytogenetic region that might represent a common susceptibility locus for both schizophrenia and bipolar affective disorder; reduced expression of HSPA12A has been shown in the prefrontal cortex of subjects with schizophrenia. HSPA12A is also a candidate gene for forelimb-girdle muscular anomaly, an autosomal recessive disorder of Japanese black cattle. HSPA12A is predominantly expressed in neuronal cells. It may also play a role in the atherosclerotic process. The gene encoding HSPA12B maps to 20p13. HSPA12B is predominantly expressed in endothelial cells, is required for angiogenesis, and may interact with known angiogenesis mediators. It may be important for host defense in microglia-mediated immune response. HSPA12B expression is up-regulated in lipopolysaccharide (LPS)-induced inflammatory response in the spinal cord, and mostly located in active microglia; this induced expression may be regulated by activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling pathways. Overexpression of HSPA12B also protects against LPS-induced cardiac dysfunction and involves the preserved activation of the PI3K/Akt signaling pathway. Length = 404 |
| >gnl|CDD|199908 cd10719, DnaJ_zf, Zinc finger domain of DnaJ and HSP40 | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 1e-25
Identities = 35/65 (53%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLD 774
C +C G+GAK GT P +C TC G GQVR Q GFF Q TCP C G GK+I PC
Sbjct: 1 CPTCNGSGAKPGTKPKTCPTCGGSGQVRQVQGTGFGFFQTQTTCPTCGGTGKIIKDPCPK 60
Query: 775 CNGIG 779
C G G
Sbjct: 61 CKGKG 65
|
Central/middle or CxxCxGxG-motif containing domain of DnaJ/Hsp40 (heat shock protein 40). DnaJ proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonin family. Hsp40 proteins are characterized by the presence of an N-terminal J domain, which mediates the interaction with Hsp70. This central domain contains four repeats of a CxxCxGxG motif and binds to two Zinc ions. It has been implicated in substrate binding. Length = 65 |
| >gnl|CDD|216058 pfam00684, DnaJ_CXXCXGXG, DnaJ central domain | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 8e-23
Identities = 33/65 (50%), Positives = 39/65 (60%), Gaps = 4/65 (6%)
Query: 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLD 774
C C+G GAK G P +C C+G GQV +Q G F +QQTCPKC G GK+I PC
Sbjct: 1 CPHCHGTGAKPGKKPKTCPQCNGSGQVVKRQRTPGGVFQMQQTCPKCGGTGKIIKDPCKV 60
Query: 775 CNGIG 779
C G G
Sbjct: 61 CKGKG 65
|
The central cysteine-rich (CR) domain of DnaJ proteins contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DNAJ cysteine rich domain and various hydrophobic peptides has been found. Length = 65 |
| >gnl|CDD|216569 pfam01556, DnaJ_C, DnaJ C terminal domain | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-19
Identities = 33/81 (40%), Positives = 49/81 (60%), Gaps = 2/81 (2%)
Query: 837 DLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFRLRGKGI-KNIRSSIPG 894
DL+ +PIS A LGG +E PTL+G+ + IP GTQ G R++GKG+ N + G
Sbjct: 1 DLYVTLPISLKEALLGGTVEVPTLDGRKVKIKIPAGTQPGDKLRIKGKGMPINKGGNGRG 60
Query: 895 DLFCHVTIETPVQLTEYQKKL 915
DL + ++ P +L+ QK+L
Sbjct: 61 DLIVTLNVKIPKKLSSEQKEL 81
|
This family consists of the C terminal region form the DnaJ protein. Although the function of this region is unknown, it is always found associated with pfam00226 and pfam00684. DnaJ is a chaperone associated with the Hsp70 heat-shock system involved in protein folding and renaturation after stress. Length = 81 |
| >gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 87.3 bits (216), Expect = 1e-18
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 787 LEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISF 846
L V+IP G+ IR G G G G+LY+ + + PH VF +GDDL+ + +
Sbjct: 158 LSVRIPPGVREGQVIRLAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPA 211
Query: 847 STAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPV 906
A +GG++ TL+G IP TQ+G+ RL+GKG + GD + V I P
Sbjct: 212 PIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWPR-GPAGRGDQYAEVRITIPT 270
Query: 907 QLTEYQKKLLRSL 919
+ T +++L + L
Sbjct: 271 RPTPEEERLYKQL 283
|
Length = 291 |
| >gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins | Back alignment and domain information |
|---|
Score = 81.3 bits (202), Expect = 1e-16
Identities = 107/408 (26%), Positives = 159/408 (38%), Gaps = 128/408 (31%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-GEILVGAPAKRQAVTNPK 132
IGIDLGT N+ V + + V+ +E PSV+A G+IL AV
Sbjct: 1 IGIDLGTANTLVYV--KGKGIVL--NE-----PSVVAIDTKTGKIL--------AVGE-- 41
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
AK ++GR P I EV+R +
Sbjct: 42 ----EAKEMLGR-----------------------------------TPGNI--EVIRPL 60
Query: 193 KKTA-EDYLGGEITEA--------------------VITVPAYFNDAQRQATKDAGRIAG 231
K D+ E TEA VI VP+ + +R+A DA AG
Sbjct: 61 KDGVIADF---EATEAMLRYFIKKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAG 117
Query: 232 L-EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLS 290
EV +I EP AAA+ GLD + N+VV D+GGGT ++++I + + K V
Sbjct: 118 AREV-YLIEEPLAAAIGAGLDIF-EPKGNMVV-DIGGGTTEIAVISLGGIVVSKSIRV-- 172
Query: 291 TNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTE 350
GG+DFD+ II Y+ ++N + G + +AE KIE+ S+ +
Sbjct: 173 -------GGDDFDEAIIRYVRRKYNLLIG-------------ERTAEEIKIEIGSAYPLD 212
Query: 351 INEPYIA----MSNGAPVHLNL--KITRAKLELLVD---ELITRTIEPCRIAIKDAGIKV 401
E + G P + + + R L+ +D E I +E +
Sbjct: 213 EEETMEVKGRDLVTGLPRTVEVTSEEVREALKEPLDEIVEAIKSVLEKTPPEL------A 266
Query: 402 SDI--NDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
+DI I+L GG + + E + E G R +P VA GA
Sbjct: 267 ADILDRGIVLTGGGALLRGLDELISEETGLPVRVAEDPLTCVAKGAGK 314
|
MreB is a bacterial protein which assembles into filaments resembling those of eukaryotic F-actin. It is involved in determining the shape of rod-like bacterial cells, by assembling into large fibrous spirals beneath the cell membrane. MreB has also been implicated in chromosome segregation; specifically MreB is thought to bind to and segregate the replication origin of bacterial chromosomes. Length = 320 |
| >gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 4e-13
Identities = 96/401 (23%), Positives = 157/401 (39%), Gaps = 102/401 (25%)
Query: 68 RIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAKR 125
SK IGIDLGT N+ V + + K I +E PSV+A + G++L VG
Sbjct: 5 GFFSKDIGIDLGTANTLVYV----KGKGIVLNE-----PSVVAIDTKTGKVLAVGE---- 51
Query: 126 QAVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKK---LAPP 182
AK ++GR P I ++R K +A
Sbjct: 52 -----------EAKEMLGR-------------TPGNIE---------AIRPLKDGVIADF 78
Query: 183 QISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPT 242
+ + +LR K A VI VP+ + +R+A ++A AG +I EP
Sbjct: 79 EATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPM 138
Query: 243 AAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302
AAA+ GL + + N+VV D+GGGT +V++I + + V S + + G++
Sbjct: 139 AAAIGAGLPVT-EPVGNMVV-DIGGGTTEVAVISLGGI-------VYSES--IRVAGDEM 187
Query: 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA----M 358
D+ I+ Y+ ++N + G +AE KIE+ S+ + E +
Sbjct: 188 DEAIVQYVRRKYNLLIGER-------------TAEEIKIEIGSAYPLDEEESMEVRGRDL 234
Query: 359 SNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIK----------VSDIND-- 406
G P + + E + + I +A +K +DI D
Sbjct: 235 VTGLPKTIEIS----------SEEVREALAEPLQQIVEA-VKSVLEKTPPELAADIIDRG 283
Query: 407 IILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
I+L GG + + + + E G +P VA G
Sbjct: 284 IVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGK 324
|
Length = 335 |
| >gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-11
Identities = 101/394 (25%), Positives = 160/394 (40%), Gaps = 94/394 (23%)
Query: 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAKRQAV 128
SK IGIDLGT N+ V ++G K I +E PSV+A + ++L VG AK+
Sbjct: 1 SKDIGIDLGTANTLV-YVKG---KGIVLNE-----PSVVAINTKTKKVLAVGNEAKKMLG 51
Query: 129 TNPKNTIYAAKRLIGRKFNEKEVQKDI----SLMPYKIVKADNGDAWISVRGKKLAPPQI 184
P N I A + L + V D +++ Y I K + R
Sbjct: 52 RTPGN-IVAVRPL------KDGVIADFEVTEAMLKYFIKKVHGRRSLSKPR--------- 95
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
VI VP+ + +R+A K+A + AG +I EP AA
Sbjct: 96 ----------------------VVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAA 133
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
A+ GL + N+VV D+GGGT +V++I + + V S + G++ D+
Sbjct: 134 AIGAGLP-VEEPTGNMVV-DIGGGTTEVAVISLGGI-------VTSKSVRV--AGDEMDE 182
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA----MSN 360
II YI ++N + G +AER KIE+ S+ TE E +
Sbjct: 183 AIIKYIRKKYNLLIGE-------------RTAERIKIEIGSAYPTEEEEKMEIRGRDLVT 229
Query: 361 GAPVHLNLK---ITRAKLELL--VDELITRTIEPCRIAIKDAGIKVSDIND--IILVGGM 413
G P + + + A E + + E + +E + +DI D I+L GG
Sbjct: 230 GLPKTIEISSEEVREALKEPVSAIVEAVKEVLEKTPPEL------AADIVDRGIVLTGGG 283
Query: 414 TRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447
+ + + + + G +P VA+G
Sbjct: 284 ALLRGLDKLLSDETGLPVHIAEDPLTCVALGTGK 317
|
This family consists of bacterial MreB and Mbl proteins as well as two related archaeal sequences. MreB is known to be a rod shape-determining protein in bacteria and goes to make up the bacterial cytoskeleton. Genes coding for MreB/Mbl are only found in elongated bacteria, not in coccoid forms. It has been speculated that constituents of the eukaryotic cytoskeleton (tubulin, actin) may have evolved from prokaryotic precursor proteins closely related to today's bacterial proteins FtsZ and MreB/Mbl. Length = 327 |
| >gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 4e-11
Identities = 88/368 (23%), Positives = 150/368 (40%), Gaps = 99/368 (26%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQ 126
R S IGIDLGT N+ V + K I +E PSV+A + G+
Sbjct: 2 RGYFSNDIGIDLGTANTLVYVKG----KGIVLNE-----PSVVAIESEGKT--------- 43
Query: 127 AVTNPKNTIYA----AKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKK---L 179
+ A AK+++GR P IV ++R K +
Sbjct: 44 ------KVVLAVGEEAKQMLGRT-------------PGNIV---------AIRPMKDGVI 75
Query: 180 APPQISAEVLRK-MKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRII 238
A +++ +L+ +KK ++ VI VP+ D +R+A K+A AG +I
Sbjct: 76 ADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLI 135
Query: 239 NEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF-L 297
EP AAA+ GL + + +V D+GGGT +V++I + + + + +
Sbjct: 136 EEPMAAAIGAGLP-IMEPTGS-MVVDIGGGTTEVAVISLGGI----------VSSSSVRV 183
Query: 298 GGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA 357
GG+ D+ II Y+ ++N + G +AE+ KIE+ S+ E +E
Sbjct: 184 GGDKMDEAIIVYVRKKYNLLIGE-------------RTAEKIKIEIGSAYPEEEDEELEM 230
Query: 358 ------MSNGAP--VHLNLKITRAKLELLVDELIT---RTIEPCRIAIKDAGIKVSDIND 406
+ G P + +N + LE ++ ++ +E +DI +
Sbjct: 231 EVRGRDLVTGLPKTITINSEEIAEALEEPLNGIVEAIRLVLEKT------PPELAADIVE 284
Query: 407 --IILVGG 412
I+L GG
Sbjct: 285 RGIVLTGG 292
|
Length = 342 |
| >gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 5e-11
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
+ E++R++K T E LG E+T A +P + + + AG+EV +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV 280
A + N V D+GGGT +SI++ V
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILKKGKV 130
|
Length = 239 |
| >gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 1e-10
Identities = 95/382 (24%), Positives = 163/382 (42%), Gaps = 80/382 (20%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQ-ENGEIL-VGAPAKRQAVTNP 131
IGIDLGT N I+ S+ K I +E PSV+A E +L +G
Sbjct: 7 IGIDLGTAN----ILVYSKNKGIILNE-----PSVVAVDTETKAVLAIGT---------- 47
Query: 132 KNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRK 191
AK +IG+ P KIV A ++ +A ++ ++L++
Sbjct: 48 -----EAKNMIGKT-------------PGKIV------AVRPMKDGVIADYDMTTDLLKQ 83
Query: 192 MKKTAEDYLGGEITE--AVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+ K A +G + V+ P+ +R+A DA + G + +I EP AAA+ G
Sbjct: 84 IMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--G 141
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
D VV D+GGGT +V+II V+S + +GG+ D+ I+ +
Sbjct: 142 ADLPVDEPVANVVVDIGGGTTEVAIISFGG--------VVSCH-SIRIGGDQLDEDIVSF 192
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA----MSNGAPVH 365
+ ++N + G + +AE+ K+E+ + E + G P
Sbjct: 193 VRKKYNLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKT 239
Query: 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVS-DIND--IILVGGMTRMPKVQEK 422
+ L+ +++ + E + +E R ++D ++S DI D +IL GG + ++E
Sbjct: 240 ITLESK--EIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEW 297
Query: 423 VKEFFGKDPRRDINPDEAVAVG 444
+ E NP E+VA+G
Sbjct: 298 LSEEIVVPVHVAANPLESVAIG 319
|
Length = 335 |
| >gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 2e-10
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 11/99 (11%)
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
+ ++R++K T E+ LG E+T A +P ++ +A + AGLEV +++EPTAA
Sbjct: 69 AVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAA 128
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGE 283
A G+D N V D+GGGT +SI++ DG+
Sbjct: 129 AAVLGID-------NGAVVDIGGGTTGISILK----DGK 156
|
Length = 267 |
| >gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 32/96 (33%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
+ E++R++K T E LG T A +P + + + AGLEV +++EPTAA
Sbjct: 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA 133
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV 280
A LD + V D+GGGT +SI++ V
Sbjct: 134 ADVLQLD-------DGGVVDIGGGTTGISIVKKGKV 162
|
Length = 277 |
| >gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 1e-09
Identities = 72/277 (25%), Positives = 117/277 (42%), Gaps = 71/277 (25%)
Query: 74 IGIDLGTTNSCVSI----IEGSQPKVIE-NSEGARTTPSVIAYQENGEILVGAPAKRQAV 128
IGIDLGT N+ V + I ++P V+ ++ T S++A VG AK
Sbjct: 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRDAKTKSILA--------VGHEAKEMLG 56
Query: 129 TNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEV 188
P N I A + + + EV + ++ Y I + + ++ P+I
Sbjct: 57 KTPGN-IVAIRPMKDGVIADFEVTE--KMIKYFIKQVHSRKSFFK--------PRI---- 101
Query: 189 LRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248
VI VP+ +R+A K++ AG +I EP AAA+
Sbjct: 102 -------------------VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAIGA 142
Query: 249 GLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308
GL + +V D+GGGT +V++I + + + V GG++FD+ II+
Sbjct: 143 GLPVEEPTGSMVV--DIGGGTTEVAVISLGGIVVSRSIRV---------GGDEFDEAIIN 191
Query: 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSS 345
YI +N + G + +AER KIE+ S
Sbjct: 192 YIRRTYNLLIG-------------EQTAERIKIEIGS 215
|
MreB (mecillinam resistance) in E. coli (also called envB) and the paralogous pair MreB and Mrl of Bacillus subtilis have all been shown to help determine cell shape. This protein is present in a wide variety of bacteria, including spirochetes, but is missing from the Mycoplasmas and from Gram-positive cocci. Most completed bacterial genomes have a single member of this family. In some species it is an essential gene. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan]. Length = 333 |
| >gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 6e-09
Identities = 33/113 (29%), Positives = 46/113 (40%), Gaps = 12/113 (10%)
Query: 174 VRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQAT---------- 223
R + E LR++ K A L EI IT P R+
Sbjct: 32 GRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPL 91
Query: 224 KDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276
A G ++N+ AAALA GL GK + ++V DLG GT ++I+E
Sbjct: 92 ALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAIVE 142
|
This superfamily includes the actin family, the HSP70 family of molecular chaperones and nucleotide exchange factors, the ROK (repressor, ORF, kinase) family, the hexokinase family, the FGGY family (which includes glycerol kinase and similar carbohydrate kinases such as rhamnulokinase and xylulokinase), the exopolyphosphatase/guanosine pentaphosphate phosphohydrolase/nucleoside triphosphate diphosphohydrolase family, propionate kinase/acetate kinase family, glycerol dehydratase reactivase, 2-hydroxyglutaryl-CoA dehydratase component A, N-acetylglucosamine kinase, butyrate kinase 2, Escherichia coli YeaZ and similar glycoproteases, the cell shape-determining protein MreB, the plasmid DNA segregation factor ParM, cell cycle proteins FtsA, Pili assembly protein PilM, ethanolamine utilization protein EutJ, and similar proteins. The nucleotide-binding site residues are conserved; the nucleotide sits in a deep cleft formed between the two lobes of the nucleotide-binding domain (NBD). Substrate binding to superfamily members is associated with closure of this catalytic site cleft. The functional activities of several members of the superfamily, including hexokinases, actin, and HSP70s, are modulated by allosteric effectors, which may act on the cleft closure. Length = 185 |
| >gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 11/108 (10%)
Query: 208 VITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGG 267
+I +P +++A ++A AG + +I EP AAA+ GLD S S N+VV D+GG
Sbjct: 99 MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSG-NMVV-DIGG 156
Query: 268 GTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFN 315
GT D++++ + + V S++ + G+ FD+ II YI ++
Sbjct: 157 GTTDIAVLSLGGI-------VTSSS--IKVAGDKFDEAIIRYIRKKYK 195
|
Length = 336 |
| >gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (140), Expect = 1e-08
Identities = 79/302 (26%), Positives = 122/302 (40%), Gaps = 112/302 (37%)
Query: 67 RRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAK 124
+ S +GIDLGT N+ V ++G K I +E PSV+A + ++L VG
Sbjct: 1 FGLFSNDLGIDLGTANTLV-YVKG---KGIVLNE-----PSVVAIRTDTKKVLAVGE--- 48
Query: 125 RQAVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQI 184
AK+++GR P I
Sbjct: 49 ------------EAKQMLGR-----------------------------------TPGNI 61
Query: 185 SAEVLRKMK-------KTAEDYLGGEITEA----------VITVPAYFNDAQRQATKDAG 227
A +R MK E L I + VI VP+ + +R+A +++
Sbjct: 62 VA--IRPMKDGVIADFDVTEKMLKYFIKKVHKNFRPSPRVVICVPSGITEVERRAVRESA 119
Query: 228 RIAGL-EVKRIINEPTAAALAFGLD---KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGE 283
AG EV +I EP AAA+ GL +G ++VV D+GGGT +V++I + +
Sbjct: 120 LGAGAREV-YLIEEPMAAAIGAGLPVTEPTG----SMVV-DIGGGTTEVAVISLGGI--- 170
Query: 284 KQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIEL 343
V S + +GG+ FD+ II+Y+ +N + G +AER KIE+
Sbjct: 171 ----VYSKS--VRVGGDKFDEAIINYVRRNYNLLIGE-------------RTAERIKIEI 211
Query: 344 SS 345
S
Sbjct: 212 GS 213
|
Length = 334 |
| >gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 70/287 (24%), Positives = 99/287 (34%), Gaps = 76/287 (26%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+++EIKK + D AE +K +I EAY VLSD EKR I
Sbjct: 17 SQDEIKKAFKKLARKYHPDVNKSPGAE------------EKFKEINEAYTVLSDPEKRRI 64
Query: 638 YDQYGHAGID---------PNMSGSSASAEASNFADAFGDIFG--DIFGSNRD--RDNNN 684
YD YG P G + +F+D F +FG FG D
Sbjct: 65 YDTYGTTAASAGWQGPPPGPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGR 124
Query: 685 KGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQ 744
+ G+DL L +TLE+A G + V ++ + I GQ
Sbjct: 125 RARKGRDLEAELPLTLEEAYRGGEKVVEV------------AGERLSVRIPPGVREGQ-V 171
Query: 745 VRMQQGFFSIQQTCPKCQGAG-------KVIPHPCLDCNG---------------IGRIK 782
+R+ G +++PHP G +G
Sbjct: 172 IRL-----------AGKGRQGGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKV 220
Query: 783 RNKTL----EVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHI 825
R TL EV IP + ++R G G P G G+ Y E+ I
Sbjct: 221 RVMTLDGPVEVTIPPRTQAGRKLRLKGKGWPRGPAG-RGDQYAEVRI 266
|
Length = 291 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 7e-07
Identities = 60/240 (25%), Positives = 100/240 (41%), Gaps = 52/240 (21%)
Query: 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKN 133
IG D GT N V+++ +P+++ + PS + E + + V
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL-CAPTREAVSEWLYRHLDVPA--- 58
Query: 134 TIYAAKR--LIGR--KFNEKEVQKDISLMPYKI------VKA---DNGDAWISVRGKK-- 178
Y +R L+ R ++N +E DI + + + D + + V+ K
Sbjct: 59 --YDDERQALLRRAIRYNREE---DIDVTAQSVFFGLAALAQYLEDPEEVYF-VKSPKSF 112
Query: 179 -----LAPPQIS------AEVLRKMKKTAEDYLGGEITEAVITVPAYFN-----DAQRQA 222
L P Q++ ++ +K+ AE L IT+AVI P F +A RQA
Sbjct: 113 LGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQA 172
Query: 223 ----TKDAGRIAGLEVKRIINEPTAAALAF--GLDKSGKSDRNIVVYDLGGGTFDVSIIE 276
+ A R AG + EP AA L F L + ++ ++V D+GGGT D S++
Sbjct: 173 EGILERAAKR-AGFKDVEFQFEPVAAGLDFEATLTE----EKRVLVVDIGGGTTDCSMLL 227
|
Length = 450 |
| >gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-06
Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 19/124 (15%)
Query: 331 RIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPC 390
R+ SAE AKI LS +T + +I S+G L +I++ LE + + + R +E
Sbjct: 336 RLVRSAEEAKIALSDQAETRASLDFI--SDG----LATEISQQGLEEAISQPLARILELV 389
Query: 391 RIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450
++A+ A +K D+ I L GG R P ++ + + P + G GS
Sbjct: 390 QLALDQAQVK-PDV--IYLTGGSARSPLIRAALAQQL---------PGIPIVGGDDF-GS 436
Query: 451 VLSG 454
V +G
Sbjct: 437 VTAG 440
|
Length = 450 |
| >gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 56/271 (20%)
Query: 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVL 289
AGL+V I+ EP A+ALA L + K + + + D+GGGT D++I +
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK------------- 221
Query: 290 STNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKD-SIALQRIKASAERAKIELSS--- 345
R I + G + KD + L+ AER KI+ S
Sbjct: 222 ---NGAL--------RYTGVI-----PVGGDHVTKDIAKGLKTPFEEAERIKIKYGSALI 265
Query: 346 ---SKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVS 402
+ I P + ++TR++L +++ + +E + ++ +G+
Sbjct: 266 SLADDEETIEVPSV---GSDIPR---QVTRSELSEIIEARVEEILELVKAELRKSGLPNH 319
Query: 403 DINDIILVGGMTRMPKVQEKVKEFFGKDPRRDI------------NPDEAVAVGAAIQGS 450
++L GG ++P + E + FG+ R + NP + AVG + G+
Sbjct: 320 LPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGA 379
Query: 451 VLSGDRKDLLLLDVTPLSLGIETMGGIMTKM 481
+++ + ++ + +E G++ K+
Sbjct: 380 LMTSEESEVEEEPKGEKIIPLEEKDGLIKKL 410
|
Length = 418 |
| >gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 45/268 (16%), Positives = 71/268 (26%), Gaps = 66/268 (24%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ EEIKK K + RN G+ + K +I EAYE+LSD E+R
Sbjct: 19 SLEEIKK---------AYRKLALKYHPDRNPGDPKVAEEKFK-EINEAYEILSDPERRAE 68
Query: 638 YDQY-GHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRDNN------NKGSNGK 690
YD+ SA+ G N+ ++G +G
Sbjct: 69 YDKIGADNYFPGKSYRESAAFPIEGSLQLTGLYEEWRGKRNKTERKASLADLLSRGLSGL 128
Query: 691 DLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQG 750
+L G + + + + +
Sbjct: 129 AAALSLFADEAALRSGSLRRRDL---------------AANLADNFEEALAGVKKAVARL 173
Query: 751 FFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPG 810
K L+ I AG +R G +
Sbjct: 174 --------------------------------LGKALKSTIKAGALEGKALRLKGLLKSA 201
Query: 811 LNGGSNGNLYIEIHIKPHKVFERDGDDL 838
G+ G ++ K H F +GDD
Sbjct: 202 R--GALGKARLKELSKRHPPFALEGDDK 227
|
Length = 237 |
| >gnl|CDD|199909 cd10747, DnaJ_C, C-terminal substrate binding domain of DnaJ and HSP40 | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 6e-05
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)
Query: 836 DDLHYEMPISFSTAALGGEIEAPTLNGKAFFV---------IPEGTQSGKIFRLRGKGIK 886
DL Y++ ++ A G E E + K V IP G G+ RLRG+G
Sbjct: 1 ADLRYDLELTLEEAYFGKEKEI-KIPRKVTRVREKKTLTVKIPAGVDDGQRLRLRGEGDA 59
Query: 887 NIRSSIPGDLFCHVTIE 903
PGDL+ + ++
Sbjct: 60 GPNGGPPGDLYVVIRVK 76
|
The C-terminal region of the DnaJ/Hsp40 protein mediates oligomerization and binding to denatured polypeptide substrate. DnaJ/Hsp40 is a widely conserved heat-shock protein. It prevents the aggregation of unfolded substrate and forms a ternary complex with both substrate and DnaK/Hsp70; the N-terminal J-domain of DnaJ/Hsp40 stimulates the ATPase activity of DnaK/Hsp70. Length = 158 |
| >gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-05
Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 19/66 (28%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAES----RNHGESLIHSTKKSLKIKEAYEVLSDSE 633
++EEIKK R+LA +N G+ + +K +I EAYEVLSD E
Sbjct: 13 SDEEIKK-------------AYRKLALKYHPDKNPGDP--AAEEKFKEINEAYEVLSDPE 57
Query: 634 KRIIYD 639
KR IYD
Sbjct: 58 KRAIYD 63
|
DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63 |
| >gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Score = 41.7 bits (97), Expect = 0.002
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNF-ADAFGDIFGDIFGS--- 676
+I EA +VLS+ +KR YD+YGH G+D + +F AD F F +I S
Sbjct: 46 EINEANDVLSNPKKRANYDKYGHDGVD--------REDDFDFQADVFNSFFEEINKSGEF 97
Query: 677 -NRDRDNNNKGSNGKDLRY 694
N D+ K +
Sbjct: 98 DNITDDDTPSKKKKKKKKK 116
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871 |
| >gnl|CDD|199910 cd10748, anti-TRAP, anti-TRAP (AT) protein specific to Bacilli | Back alignment and domain information |
|---|
Score = 36.1 bits (83), Expect = 0.004
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 754 IQQTCPKCQGAGKVIPHPCLDCNGIGRI 781
++ TCPKC+ AG+ PC C+G G I
Sbjct: 7 LEVTCPKCERAGEEEGTPCPKCSGKGVI 34
|
In Bacillus subtilis and related bacteria, AT binds to the TRAP protein, (tryptophan-activated trp RNA-binding attenuation protein), effectively disrupting interaction of TRAP with mRNAs. Upon binding of tryptophan, TRAP (which forms a complex of 11 identical subunits) interacts with a specific location in the leader RNA and blocks translation of the tryptophan biosynthetic operon. AT, in turn, recognizes the tryptophan-activated TRAP complex and prevents RNA binding. AT is expressed in response to high levels of uncharged tryptophan tRNA. AT contains a zinc-binding motif that closely resembles the zinc-binding motifs in the zinc-finger region of DnaJ/Hsp40. AT has been shown to form homo-dodecameric assemblies, and can actually do that in two different relative orientations, resulting in two different dodecamers. Recent data suggest that the trimeric form of AT may be the biologically relevant active complex. Length = 52 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 945 | |||
| KOG0100|consensus | 663 | 100.0 | ||
| PTZ00186 | 657 | heat shock 70 kDa precursor protein; Provisional | 100.0 | |
| KOG0102|consensus | 640 | 100.0 | ||
| PRK13410 | 668 | molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00400 | 663 | DnaK-type molecular chaperone; Provisional | 100.0 | |
| PRK13411 | 653 | molecular chaperone DnaK; Provisional | 100.0 | |
| PLN03184 | 673 | chloroplast Hsp70; Provisional | 100.0 | |
| PRK00290 | 627 | dnaK molecular chaperone DnaK; Provisional | 100.0 | |
| PTZ00009 | 653 | heat shock 70 kDa protein; Provisional | 100.0 | |
| TIGR02350 | 595 | prok_dnaK chaperone protein DnaK. Members of this | 100.0 | |
| CHL00094 | 621 | dnaK heat shock protein 70 | 100.0 | |
| TIGR01991 | 599 | HscA Fe-S protein assembly chaperone HscA. The Hea | 100.0 | |
| PRK05183 | 616 | hscA chaperone protein HscA; Provisional | 100.0 | |
| KOG0101|consensus | 620 | 100.0 | ||
| PRK01433 | 595 | hscA chaperone protein HscA; Provisional | 100.0 | |
| COG0443 | 579 | DnaK Molecular chaperone [Posttranslational modifi | 100.0 | |
| PF00012 | 602 | HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho | 100.0 | |
| KOG0103|consensus | 727 | 100.0 | ||
| COG0484 | 371 | DnaJ DnaJ-class molecular chaperone with C-termina | 100.0 | |
| KOG0104|consensus | 902 | 100.0 | ||
| PRK14288 | 369 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14298 | 377 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14277 | 386 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14287 | 371 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14296 | 372 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14286 | 372 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14276 | 380 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14284 | 391 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14297 | 380 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK10767 | 371 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14280 | 376 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14301 | 373 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14278 | 378 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14300 | 372 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14279 | 392 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14294 | 366 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14285 | 365 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14295 | 389 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14281 | 397 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14289 | 386 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14282 | 369 | chaperone protein DnaJ; Provisional | 100.0 | |
| PTZ00037 | 421 | DnaJ_C chaperone protein; Provisional | 100.0 | |
| PRK14293 | 374 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14291 | 382 | chaperone protein DnaJ; Provisional | 100.0 | |
| TIGR02349 | 354 | DnaJ_bact chaperone protein DnaJ. This model repre | 100.0 | |
| PRK14292 | 371 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14283 | 378 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK14290 | 365 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK11678 | 450 | putative chaperone; Provisional | 100.0 | |
| KOG0712|consensus | 337 | 100.0 | ||
| PRK14299 | 291 | chaperone protein DnaJ; Provisional | 100.0 | |
| PRK10266 | 306 | curved DNA-binding protein CbpA; Provisional | 100.0 | |
| PRK13928 | 336 | rod shape-determining protein Mbl; Provisional | 100.0 | |
| PRK13929 | 335 | rod-share determining protein MreBH; Provisional | 100.0 | |
| PRK13927 | 334 | rod shape-determining protein MreB; Provisional | 100.0 | |
| TIGR00904 | 333 | mreB cell shape determining protein, MreB/Mrl fami | 100.0 | |
| PRK13930 | 335 | rod shape-determining protein MreB; Provisional | 100.0 | |
| PF06723 | 326 | MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba | 99.97 | |
| COG1077 | 342 | MreB Actin-like ATPase involved in cell morphogene | 99.96 | |
| TIGR02529 | 239 | EutJ ethanolamine utilization protein EutJ family | 99.95 | |
| PRK15080 | 267 | ethanolamine utilization protein EutJ; Provisional | 99.93 | |
| TIGR03835 | 871 | termin_org_DnaJ terminal organelle assembly protei | 99.93 | |
| COG0484 | 371 | DnaJ DnaJ-class molecular chaperone with C-termina | 99.91 | |
| PRK14285 | 365 | chaperone protein DnaJ; Provisional | 99.85 | |
| KOG0713|consensus | 336 | 99.85 | ||
| PRK14298 | 377 | chaperone protein DnaJ; Provisional | 99.85 | |
| TIGR01174 | 371 | ftsA cell division protein FtsA. This bacterial ce | 99.84 | |
| PRK14288 | 369 | chaperone protein DnaJ; Provisional | 99.84 | |
| PRK14282 | 369 | chaperone protein DnaJ; Provisional | 99.83 | |
| PRK14276 | 380 | chaperone protein DnaJ; Provisional | 99.83 | |
| PRK14296 | 372 | chaperone protein DnaJ; Provisional | 99.83 | |
| PRK14301 | 373 | chaperone protein DnaJ; Provisional | 99.83 | |
| PRK10767 | 371 | chaperone protein DnaJ; Provisional | 99.82 | |
| PRK09472 | 420 | ftsA cell division protein FtsA; Reviewed | 99.82 | |
| PRK14279 | 392 | chaperone protein DnaJ; Provisional | 99.82 | |
| KOG0715|consensus | 288 | 99.81 | ||
| PRK14277 | 386 | chaperone protein DnaJ; Provisional | 99.81 | |
| PRK14280 | 376 | chaperone protein DnaJ; Provisional | 99.8 | |
| PRK14300 | 372 | chaperone protein DnaJ; Provisional | 99.8 | |
| PRK14286 | 372 | chaperone protein DnaJ; Provisional | 99.8 | |
| PRK14284 | 391 | chaperone protein DnaJ; Provisional | 99.78 | |
| PRK14287 | 371 | chaperone protein DnaJ; Provisional | 99.77 | |
| PRK14290 | 365 | chaperone protein DnaJ; Provisional | 99.77 | |
| PRK14295 | 389 | chaperone protein DnaJ; Provisional | 99.77 | |
| PRK14294 | 366 | chaperone protein DnaJ; Provisional | 99.77 | |
| PRK14278 | 378 | chaperone protein DnaJ; Provisional | 99.77 | |
| PF01556 | 81 | CTDII: DnaJ C terminal domain; InterPro: IPR002939 | 99.76 | |
| PRK14281 | 397 | chaperone protein DnaJ; Provisional | 99.75 | |
| PRK14283 | 378 | chaperone protein DnaJ; Provisional | 99.75 | |
| PRK14297 | 380 | chaperone protein DnaJ; Provisional | 99.75 | |
| TIGR02349 | 354 | DnaJ_bact chaperone protein DnaJ. This model repre | 99.72 | |
| PRK14289 | 386 | chaperone protein DnaJ; Provisional | 99.72 | |
| COG0849 | 418 | ftsA Cell division ATPase FtsA [Cell division and | 99.71 | |
| PRK14291 | 382 | chaperone protein DnaJ; Provisional | 99.71 | |
| PRK14293 | 374 | chaperone protein DnaJ; Provisional | 99.68 | |
| cd00012 | 371 | ACTIN Actin; An ubiquitous protein involved in the | 99.67 | |
| PRK14292 | 371 | chaperone protein DnaJ; Provisional | 99.65 | |
| PTZ00037 | 421 | DnaJ_C chaperone protein; Provisional | 99.65 | |
| KOG0712|consensus | 337 | 99.62 | ||
| smart00268 | 373 | ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki | 99.61 | |
| COG4820 | 277 | EutJ Ethanolamine utilization protein, possible ch | 99.58 | |
| PRK13917 | 344 | plasmid segregation protein ParM; Provisional | 99.44 | |
| PTZ00280 | 414 | Actin-related protein 3; Provisional | 99.44 | |
| PTZ00452 | 375 | actin; Provisional | 99.36 | |
| PRK15027 | 484 | xylulokinase; Provisional | 99.34 | |
| PF00022 | 393 | Actin: Actin; InterPro: IPR004000 Actin [, ] is a | 99.33 | |
| TIGR02628 | 465 | fuculo_kin_coli L-fuculokinase. Members of this fa | 99.33 | |
| PTZ00281 | 376 | actin; Provisional | 99.3 | |
| PRK10331 | 470 | L-fuculokinase; Provisional | 99.29 | |
| PTZ00004 | 378 | actin-2; Provisional | 99.26 | |
| PTZ00466 | 380 | actin-like protein; Provisional | 99.23 | |
| TIGR01175 | 348 | pilM type IV pilus assembly protein PilM. This pro | 99.19 | |
| TIGR01314 | 505 | gntK_FGGY gluconate kinase, FGGY type. Gluconate i | 99.18 | |
| PRK00047 | 498 | glpK glycerol kinase; Provisional | 99.14 | |
| PTZ00294 | 504 | glycerol kinase-like protein; Provisional | 99.13 | |
| PLN02295 | 512 | glycerol kinase | 99.13 | |
| TIGR03739 | 320 | PRTRC_D PRTRC system protein D. A novel genetic sy | 99.11 | |
| COG1070 | 502 | XylB Sugar (pentulose and hexulose) kinases [Carbo | 99.11 | |
| TIGR01315 | 541 | 5C_CHO_kinase FGGY-family pentulose kinase. This m | 99.11 | |
| PF11104 | 340 | PilM_2: Type IV pilus assembly protein PilM;; PDB: | 99.1 | |
| PF00684 | 66 | DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 | 99.09 | |
| TIGR01234 | 536 | L-ribulokinase L-ribulokinase. This enzyme catalyz | 99.08 | |
| PRK04123 | 548 | ribulokinase; Provisional | 99.08 | |
| PRK10939 | 520 | autoinducer-2 (AI-2) kinase; Provisional | 99.06 | |
| PRK10266 | 306 | curved DNA-binding protein CbpA; Provisional | 99.01 | |
| TIGR01311 | 493 | glycerol_kin glycerol kinase. This model describes | 99.0 | |
| TIGR01312 | 481 | XylB D-xylulose kinase. D-xylulose kinase (XylB) g | 98.96 | |
| PRK14299 | 291 | chaperone protein DnaJ; Provisional | 98.94 | |
| PF06406 | 318 | StbA: StbA protein; InterPro: IPR009440 This entry | 98.9 | |
| TIGR00241 | 248 | CoA_E_activ CoA-substrate-specific enzyme activase | 98.9 | |
| KOG0679|consensus | 426 | 98.86 | ||
| COG4972 | 354 | PilM Tfp pilus assembly protein, ATPase PilM [Cell | 98.84 | |
| PLN02669 | 556 | xylulokinase | 98.83 | |
| PF07520 | 1002 | SrfB: Virulence factor SrfB; InterPro: IPR009216 T | 98.77 | |
| PF01556 | 81 | CTDII: DnaJ C terminal domain; InterPro: IPR002939 | 98.72 | |
| COG5277 | 444 | Actin and related proteins [Cytoskeleton] | 98.64 | |
| TIGR02627 | 454 | rhamnulo_kin rhamnulokinase. This model describes | 98.63 | |
| TIGR03192 | 293 | benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s | 98.61 | |
| COG1069 | 544 | AraB Ribulose kinase [Energy production and conver | 98.58 | |
| COG1924 | 396 | Activator of 2-hydroxyglutaryl-CoA dehydratase (HS | 98.45 | |
| PLN03165 | 111 | chaperone protein dnaJ-related; Provisional | 98.43 | |
| TIGR03286 | 404 | methan_mark_15 putative methanogenesis marker prot | 98.43 | |
| TIGR02259 | 432 | benz_CoA_red_A benzoyl-CoA reductase, bcr type, su | 98.41 | |
| PRK10719 | 475 | eutA reactivating factor for ethanolamine ammonia | 98.4 | |
| KOG0714|consensus | 306 | 98.34 | ||
| TIGR02261 | 262 | benz_CoA_red_D benzoyl-CoA reductase, bcr type, su | 98.27 | |
| PF08841 | 332 | DDR: Diol dehydratase reactivase ATPase-like domai | 98.24 | |
| COG0554 | 499 | GlpK Glycerol kinase [Energy production and conver | 98.18 | |
| PRK13317 | 277 | pantothenate kinase; Provisional | 98.18 | |
| KOG2517|consensus | 516 | 98.17 | ||
| PRK10640 | 471 | rhaB rhamnulokinase; Provisional | 98.12 | |
| KOG0676|consensus | 372 | 98.06 | ||
| PF00684 | 66 | DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR0 | 98.02 | |
| COG4457 | 1014 | SrfB Uncharacterized protein conserved in bacteria | 97.97 | |
| PF02782 | 198 | FGGY_C: FGGY family of carbohydrate kinases, C-ter | 97.8 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 97.55 | |
| TIGR02642 | 186 | phage_xxxx uncharacterized phage protein. This unc | 97.48 | |
| KOG0677|consensus | 389 | 97.3 | ||
| TIGR03835 | 871 | termin_org_DnaJ terminal organelle assembly protei | 97.24 | |
| KOG0797|consensus | 618 | 97.14 | ||
| PLN03165 | 111 | chaperone protein dnaJ-related; Provisional | 97.13 | |
| KOG0680|consensus | 400 | 97.07 | ||
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 97.06 | |
| PF01869 | 271 | BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In | 96.95 | |
| KOG2813|consensus | 406 | 96.88 | ||
| PF06277 | 473 | EutA: Ethanolamine utilisation protein EutA; Inter | 96.56 | |
| KOG0624|consensus | 504 | 96.18 | ||
| KOG0718|consensus | 546 | 96.13 | ||
| TIGR02642 | 186 | phage_xxxx uncharacterized phage protein. This unc | 96.09 | |
| PRK03011 | 358 | butyrate kinase; Provisional | 95.52 | |
| PF14574 | 412 | DUF4445: Domain of unknown function (DUF4445); PDB | 94.79 | |
| PRK10854 | 513 | exopolyphosphatase; Provisional | 94.78 | |
| PTZ00341 | 1136 | Ring-infected erythrocyte surface antigen; Provisi | 94.58 | |
| KOG2531|consensus | 545 | 94.55 | ||
| PRK11031 | 496 | guanosine pentaphosphate phosphohydrolase; Provisi | 94.48 | |
| COG2214 | 237 | CbpA DnaJ-class molecular chaperone [Posttranslati | 94.44 | |
| COG0248 | 492 | GppA Exopolyphosphatase [Nucleotide transport and | 94.01 | |
| KOG2813|consensus | 406 | 94.0 | ||
| TIGR00744 | 318 | ROK_glcA_fam ROK family protein (putative glucokin | 93.88 | |
| TIGR00555 | 279 | panK_eukar pantothenate kinase, eukaryotic/staphyl | 93.84 | |
| COG4819 | 473 | EutA Ethanolamine utilization protein, possible ch | 93.44 | |
| KOG0681|consensus | 645 | 93.42 | ||
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 93.16 | |
| KOG0716|consensus | 279 | 93.1 | ||
| COG3426 | 358 | Butyrate kinase [Energy production and conversion] | 92.97 | |
| PRK09557 | 301 | fructokinase; Reviewed | 92.83 | |
| KOG0713|consensus | 336 | 92.69 | ||
| KOG0715|consensus | 288 | 92.28 | ||
| TIGR03706 | 300 | exo_poly_only exopolyphosphatase. It appears that | 92.22 | |
| PRK14878 | 323 | UGMP family protein; Provisional | 91.87 | |
| PF00370 | 245 | FGGY_N: FGGY family of carbohydrate kinases, N-ter | 91.58 | |
| PF13941 | 457 | MutL: MutL protein | 91.36 | |
| PTZ00107 | 464 | hexokinase; Provisional | 90.74 | |
| COG1548 | 330 | Predicted transcriptional regulator/sugar kinase [ | 89.67 | |
| COG2971 | 301 | Predicted N-acetylglucosamine kinase [Carbohydrate | 89.26 | |
| PRK05082 | 291 | N-acetylmannosamine kinase; Provisional | 89.21 | |
| PRK09604 | 332 | UGMP family protein; Validated | 89.15 | |
| KOG1385|consensus | 453 | 88.99 | ||
| TIGR03123 | 318 | one_C_unchar_1 probable H4MPT-linked C1 transfer p | 88.61 | |
| PRK09605 | 535 | bifunctional UGMP family protein/serine/threonine | 88.32 | |
| KOG0719|consensus | 264 | 88.09 | ||
| COG1940 | 314 | NagC Transcriptional regulator/sugar kinase [Trans | 88.08 | |
| PTZ00340 | 345 | O-sialoglycoprotein endopeptidase-like protein; Pr | 87.03 | |
| COG2192 | 555 | Predicted carbamoyl transferase, NodU family [Post | 86.68 | |
| PF14450 | 120 | FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B | 86.55 | |
| smart00842 | 187 | FtsA Cell division protein FtsA. FtsA is essential | 86.2 | |
| TIGR03281 | 326 | methan_mark_12 putative methanogenesis marker prot | 86.16 | |
| KOG0681|consensus | 645 | 86.09 | ||
| PF07318 | 343 | DUF1464: Protein of unknown function (DUF1464); In | 85.9 | |
| TIGR03723 | 314 | bact_gcp putative glycoprotease GCP. This model re | 85.73 | |
| PF02541 | 285 | Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I | 85.67 | |
| KOG0691|consensus | 296 | 85.61 | ||
| TIGR00329 | 305 | gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami | 85.19 | |
| PRK09698 | 302 | D-allose kinase; Provisional | 84.98 | |
| KOG2824|consensus | 281 | 84.84 | ||
| PHA03102 | 153 | Small T antigen; Reviewed | 84.64 | |
| smart00709 | 160 | Zpr1 Duplicated domain in the epidermal growth fac | 84.13 | |
| PF02543 | 360 | CmcH_NodU: Carbamoyltransferase; InterPro: IPR0036 | 83.53 | |
| PLN02666 | 1275 | 5-oxoprolinase | 83.43 | |
| COG0533 | 342 | QRI7 Metal-dependent proteases with possible chape | 82.55 | |
| PRK13310 | 303 | N-acetyl-D-glucosamine kinase; Provisional | 82.54 | |
| cd03031 | 147 | GRX_GRX_like Glutaredoxin (GRX) family, GRX-like d | 81.85 | |
| COG1521 | 251 | Pantothenate kinase type III (Bvg accessory factor | 81.6 |
| >KOG0100|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-111 Score=862.12 Aligned_cols=566 Identities=55% Similarity=0.861 Sum_probs=541.3
Q ss_pred cCCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCc
Q psy2902 69 IMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNE 148 (945)
Q Consensus 69 ~m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~ 148 (945)
-|..+||||+|||||||+++.+|..++|.|.+|++.+||+|+|.++ ++++|.+|.+++..||++++++.|||+|+++++
T Consensus 34 ~~gtvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~d-erLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d 112 (663)
T KOG0100|consen 34 KLGTVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDD-ERLIGDAAKNQLTSNPENTIFDAKRLIGRKFND 112 (663)
T ss_pred ccceEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccc-hhhhhhHhhcccccCcccceechHHHhCcccCC
Confidence 3688999999999999999999999999999999999999999877 899999999999999999999999999999999
Q ss_pred HHHHhhhcCCCeeEEecCC-CceEEEEC-C--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHH
Q psy2902 149 KEVQKDISLMPYKIVKADN-GDAWISVR-G--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224 (945)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 224 (945)
+.+++++++|||+++..++ .++-+.+. | +.++|+++++|+|..+++.|+.+++..+.++|+||||||++.||++++
T Consensus 113 ~~vq~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATK 192 (663)
T KOG0100|consen 113 KSVQKDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATK 192 (663)
T ss_pred hhhhhhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhc
Confidence 9999999999999996433 34455555 2 579999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHH
Q psy2902 225 DAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 225 ~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
+|..+|||+++++|+||+|||++|+++.. ....++||||+||||||+|++.+ .++.|+++++.|+.++||++||.
T Consensus 193 DAGtIAgLnV~RIiNePTaAAIAYGLDKk-~gEknilVfDLGGGTFDVSlLtI----dnGVFeVlaTnGDThLGGEDFD~ 267 (663)
T KOG0100|consen 193 DAGTIAGLNVVRIINEPTAAAIAYGLDKK-DGEKNILVFDLGGGTFDVSLLTI----DNGVFEVLATNGDTHLGGEDFDQ 267 (663)
T ss_pred ccceeccceEEEeecCccHHHHHhccccc-CCcceEEEEEcCCceEEEEEEEE----cCceEEEEecCCCcccCccchHH
Confidence 99999999999999999999999999986 66789999999999999999999 89999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHH
Q psy2902 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELIT 384 (945)
Q Consensus 305 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~ 384 (945)
++++|+.+.|+++.+.|++.+.+++.+|+.+||++|+.||++.++.+.++.+.++. +++-++||+.||++..+++.
T Consensus 268 rvm~~fiklykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~----DfSEtLtRAkFEElNmDLFr 343 (663)
T KOG0100|consen 268 RVMEYFIKLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGV----DFSETLTRAKFEELNMDLFR 343 (663)
T ss_pred HHHHHHHHHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccc----cccchhhhhHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999988776 89999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh-CCCCCCCCCCCchhhhhHHHhhhhccC--CCCceEE
Q psy2902 385 RTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-GKDPRRDINPDEAVAVGAAIQGSVLSG--DRKDLLL 461 (945)
Q Consensus 385 ~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-g~~~~~~~~p~~avA~GAa~~a~~~~~--~~~~~~~ 461 (945)
.++.++.++|+++++...+|+.|+||||++|+|.+|++|+++| |++.....||++|||+|||.+|..++| ...++++
T Consensus 344 ~TlkPv~kvl~Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsGee~t~divL 423 (663)
T KOG0100|consen 344 KTLKPVQKVLEDSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSGEEDTGDIVL 423 (663)
T ss_pred HhhHHHHHHHhhcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhcccccccCcCcEEE
Confidence 9999999999999999999999999999999999999999999 888999999999999999999999999 5678999
Q ss_pred EeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCe
Q psy2902 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQ 541 (945)
Q Consensus 462 ~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~ 541 (945)
.|++|+++||++.+|.|..||+||+.||+++++.|++..|+|+.+.|++|+|++++..+|+.||.|.+.++||+|+|.|+
T Consensus 424 LDv~pLtlGIETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpq 503 (663)
T KOG0100|consen 424 LDVNPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQ 503 (663)
T ss_pred EeeccccceeeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchh
Q psy2902 542 IEVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSL 620 (945)
Q Consensus 542 i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~ 620 (945)
|+|+|++|.||+|+|+|.|+++|++.+++|+++ ..||+|+|++|++++++++++|+..+++.+++|.+|+|.|.+++.+
T Consensus 504 IEVtFevDangiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi 583 (663)
T KOG0100|consen 504 IEVTFEVDANGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQI 583 (663)
T ss_pred EEEEEEEccCceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhcc
Confidence 999999999999999999999999999999976 4699999999999999999999999999999999999999999988
Q ss_pred hh-hhhhhccChhHHHHHHHHhccc
Q psy2902 621 KI-KEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 621 ~~-~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
.. +.....|++++|+.+.+...+.
T Consensus 584 ~dkekLg~Kl~~edKe~~e~av~e~ 608 (663)
T KOG0100|consen 584 GDKEKLGGKLSDEDKETIEDAVEEA 608 (663)
T ss_pred CchhHhcccCChhHHHHHHHHHHHH
Confidence 54 4577899999999999987764
|
|
| >PTZ00186 heat shock 70 kDa precursor protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-90 Score=810.77 Aligned_cols=563 Identities=59% Similarity=0.942 Sum_probs=527.1
Q ss_pred CceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
+.+||||||||||+||+++++.++++.|..|.+.+||+|+|+++ .+++|..|..+...+|.++++++||+||++++++.
T Consensus 27 ~~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~-~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~ 105 (657)
T PTZ00186 27 GDVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGS-EKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEH 105 (657)
T ss_pred ceEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCC-CEEEcHHHHHhhhhCchhHHHHHHHHhccccccHH
Confidence 35899999999999999999999999999999999999999855 68999999999999999999999999999999999
Q ss_pred HHhhhcCCCeeEEecCCCceEEEE-CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISV-RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
++.....+||+++...++...+.. .+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||++
T Consensus 106 v~~~~~~~p~~vv~~~~~~~~i~~~~~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~~ 185 (657)
T PTZ00186 106 IQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTI 185 (657)
T ss_pred HHHhhccCcEEEEEcCCCceEEEeCCCeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHHH
Confidence 999999999999988888777765 4678999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+... ..+..++|||+||||||+|++++ .++.++++++.|+.++||.+||.+|++|
T Consensus 186 AGl~v~rlInEPtAAAlayg~~~--~~~~~vlV~DlGGGT~DvSil~~----~~g~~~V~at~Gd~~LGG~DfD~~l~~~ 259 (657)
T PTZ00186 186 AGLNVIRVVNEPTAAALAYGMDK--TKDSLIAVYDLGGGTFDISVLEI----AGGVFEVKATNGDTHLGGEDFDLALSDY 259 (657)
T ss_pred cCCCeEEEEcChHHHHHHHhccC--CCCCEEEEEECCCCeEEEEEEEE----eCCEEEEEEecCCCCCCchhHHHHHHHH
Confidence 99999999999999999999876 35689999999999999999999 6789999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|...++.++..+.+++.+|+.+||++|+.||....+.+.++.+..+.++..++++.|||++|+++++++++++..+
T Consensus 260 ~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~ 339 (657)
T PTZ00186 260 ILEEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAP 339 (657)
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHH
Confidence 99999998888888889999999999999999999999999998876554434446889999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|++++++..+|+.|+||||+||||.|+++|+++|+.++....||++|||+|||++|+++++..+++.+.|++|++|
T Consensus 340 v~~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg~~~~~~~nPdeaVA~GAAi~a~~l~~~~~~~~l~Dv~p~sl 419 (657)
T PTZ00186 340 CKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSL 419 (657)
T ss_pred HHHHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhCCCccccCCCchHHHHhHHHHHHHhccccCceEEEeeccccc
Confidence 99999999999999999999999999999999999999988888999999999999999999999888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
||++.++.+.+||++|++||++++.+|++..|||+.+.|.||||++..+.+|..||++.|.++|+.|+|.++|+|+|++|
T Consensus 420 gie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf~iD 499 (657)
T PTZ00186 420 GIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDID 499 (657)
T ss_pred cceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+|+|+|.+..||+..+++|..+.+||++||+++.++++++..+|+..+++.+++|.++.+++..++.+.. . ..+
T Consensus 500 ~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~ 576 (657)
T PTZ00186 500 ANGICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGE--W-KYV 576 (657)
T ss_pred CCCEEEEEEEEccCCcEEEEEeccCccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhh--h-ccC
Confidence 9999999999999999999999988889999999999999999999999999999999999999888877741 1 457
Q ss_pred ChhHHHHHHHHhcc
Q psy2902 630 SDSEKRIIYDQYGH 643 (945)
Q Consensus 630 ~~~~k~~~~d~~~~ 643 (945)
+.+++..+.+.+..
T Consensus 577 ~~~~~~~~~~~~~~ 590 (657)
T PTZ00186 577 SDAEKENVKTLVAE 590 (657)
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777666543
|
|
| >KOG0102|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-91 Score=740.41 Aligned_cols=563 Identities=64% Similarity=0.981 Sum_probs=546.4
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
.++|||+|||+|+++++.+..|.++.|.+|.+.+||+++|..++++++|..|..+...+|.++++.-||++|++++++++
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcC
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAG 231 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AG 231 (945)
+.+.+..||+++...++++|++..|..++|.++.+++|.+++++|+.+++..+..+|+||||||++.||+++++|.++||
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~~G~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag~iag 187 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEARGKQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAGQIAG 187 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEeCCeEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHH
Q psy2902 232 LEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIL 311 (945)
Q Consensus 232 l~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~ 311 (945)
++++++++||+|||++|+++.. ....++|||+||||+|++++.+ .++.+++.++.++.++||++||..+++|+.
T Consensus 188 l~vlrvineptaaalaygld~k--~~g~iaV~dLgggtfdisilei----~~gvfevksTngdtflggedfd~~~~~~~v 261 (640)
T KOG0102|consen 188 LNVLRVINEPTAAALAYGLDKK--EDGVIAVFDLGGGTFDISILEI----EDGVFEVKSTNGDTHLGGEDFDNALVRFIV 261 (640)
T ss_pred ceeeccCCccchhHHhhccccc--CCCceEEEEcCCceeeeeeehh----ccceeEEEeccCccccChhHHHHHHHHHHH
Confidence 9999999999999999999985 3788999999999999999999 889999999999999999999999999999
Q ss_pred HHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy2902 312 DEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCR 391 (945)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~ 391 (945)
..|....+.++..+..++.+|.+++|++|+.||+.....+.+|++..+..++..+++.+||.+||+++.+++++.++++.
T Consensus 262 ~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~~ 341 (640)
T KOG0102|consen 262 SEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPCK 341 (640)
T ss_pred HhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccceeeE
Q psy2902 392 IAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGI 471 (945)
Q Consensus 392 ~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~gi 471 (945)
.+|++|++...||+.|+|+||.+|+|.+++.+++.||.......||+++||.|||++++.++|+++++++.|++|+++||
T Consensus 342 ~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~fgk~p~~~vnPdeava~GAaiqggvl~geVkdvlLLdVtpLsLgi 421 (640)
T KOG0102|consen 342 KALRDASLSSSDINEVILVGGMTRMPKVQSTVKELFGKGPSKGVNPDEAVAGGAAIQGGVLSGEVKDVLLLDVTPLSLGI 421 (640)
T ss_pred HHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHhCCCCCCCcCCcchhccchhhccchhhccccceeeeecchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEECCC
Q psy2902 472 ETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDAN 551 (945)
Q Consensus 472 ~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d~~ 551 (945)
++.+|.|..||++|+.||+.++..|++..|+|+.+.|.+|+|++++..+|..+|.|.+.++||.|+|.++|+|+|.+|+|
T Consensus 422 etlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVtfDIdan 501 (640)
T KOG0102|consen 422 ETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVTFDIDAN 501 (640)
T ss_pred HhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEEEeecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccCh
Q psy2902 552 GILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSD 631 (945)
Q Consensus 552 g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~ 631 (945)
||++|+|.|..||+.+++++....+||++||+.|+++++++...|+..++..+.+|.+++.+++..+.+. ++.+.++.
T Consensus 502 GI~~vsA~dk~t~K~qsi~i~~sggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~--~~~~~~~~ 579 (640)
T KOG0102|consen 502 GIGTVSAKDKGTGKSQSITIASSGGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLK--EFEEKIPA 579 (640)
T ss_pred ceeeeehhhcccCCccceEEeecCCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhh--hhhhhCcH
Confidence 9999999999999999999999999999999999999999999999999999999999999999888876 56677777
Q ss_pred hHHHHHHHHhc
Q psy2902 632 SEKRIIYDQYG 642 (945)
Q Consensus 632 ~~k~~~~d~~~ 642 (945)
++..++.+.+.
T Consensus 580 ~~~~~i~~~i~ 590 (640)
T KOG0102|consen 580 EECEKLEEKIS 590 (640)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
|
| >PRK13410 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-89 Score=805.32 Aligned_cols=566 Identities=52% Similarity=0.882 Sum_probs=529.3
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+++||||||||||+||++.+|.+.++.|..|.+.+||+|+|..++++++|..|..+...+|.++++++||+||+++.+
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~- 79 (668)
T PRK13410 1 MGRIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE- 79 (668)
T ss_pred CCcEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh-
Confidence 5678999999999999999999999999999999999999998777899999999999999999999999999998865
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEE--CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISV--RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
++.....+||.++...++.+.+.+ .+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 80 -~~~~~~~~~~~v~~~~~g~~~i~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 80 -LDPESKRVPYTIRRNEQGNVRIKCPRLEREFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred -hHHhhccCCeEEEECCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 455667899999988888887776 45789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.|||+++++++||+|||++|+... ..+.++||||+||||+|+|++++ .++.++++++.++..+||.+||.+|+
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~--~~~~~vlV~DlGgGT~Dvsv~~~----~~g~~~V~at~gd~~lGG~dfD~~l~ 232 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDR--SSSQTVLVFDLGGGTFDVSLLEV----GNGVFEVKATSGDTQLGGNDFDKRIV 232 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhcccc--CCCCEEEEEECCCCeEEEEEEEE----cCCeEEEEEeecCCCCChhHHHHHHH
Confidence 9999999999999999999999876 45788999999999999999999 67899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
+|+.++|..+++.++..+++++.+|+.+||++|+.||....+.+.++.+..+..++.++...|||++|++++.++++++.
T Consensus 233 ~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~ 312 (668)
T PRK13410 233 DWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLL 312 (668)
T ss_pred HHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHH
Confidence 99999999888888888899999999999999999999999999998876554455688999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccc
Q psy2902 388 EPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPL 467 (945)
Q Consensus 388 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~ 467 (945)
.+++++|+.+++.+.+|+.|+||||+||||+|+++|++.|+.++....||++|||+|||++|+++++..+++.+.|++|+
T Consensus 313 ~~i~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~l~Dv~p~ 392 (668)
T PRK13410 313 RPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPL 392 (668)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHcCCCcccCCCCchHHHHhHHHHHHhhcccccceeEEeeccc
Confidence 99999999999999999999999999999999999999999888889999999999999999999998899999999999
Q ss_pred eeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEE
Q psy2902 468 SLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFD 547 (945)
Q Consensus 468 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~ 547 (945)
++|+++.+|.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|+
T Consensus 393 slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~f~ 472 (668)
T PRK13410 393 SLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFD 472 (668)
T ss_pred cccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhh--hhh
Q psy2902 548 IDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKI--KEA 625 (945)
Q Consensus 548 ~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~--~~~ 625 (945)
+|.||+|+|++.+..+|++..++|....+||++||++++++++++..+|+..+++.+++|.+|++++.+++.+.. +++
T Consensus 473 id~nGiL~V~a~d~~tg~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~~~~ 552 (668)
T PRK13410 473 IDANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAALEF 552 (668)
T ss_pred ECCCcEEEEEEEEcCCCceeeeeecccccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999877889999999999999999999999999999999999999999999862 246
Q ss_pred hhccChhHHHHHHHHhcc
Q psy2902 626 YEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 626 ~~~l~~~~k~~~~d~~~~ 643 (945)
.+++++++++++...+.+
T Consensus 553 ~~~~~~~~~~~~~~~l~~ 570 (668)
T PRK13410 553 GPYFAERQRRAVESAMRD 570 (668)
T ss_pred hccCCHHHHHHHHHHHHH
Confidence 678888888877666543
|
|
| >PTZ00400 DnaK-type molecular chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-88 Score=806.91 Aligned_cols=567 Identities=63% Similarity=0.993 Sum_probs=537.6
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.++.++++.|..|++.+||+|+|+.++++++|..|..+...+|.++++++||+||++++++
T Consensus 40 ~~~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 119 (663)
T PTZ00400 40 TGDIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDED 119 (663)
T ss_pred cCcEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcH
Confidence 55689999999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
.++.....+||.++...++...+.+.+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||+.
T Consensus 120 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 199 (663)
T PTZ00400 120 ATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKI 199 (663)
T ss_pred HHHhhhccCCeEEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999988888899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+... ..+..+||||+||||+|+|++++ .++.++++++.|+..+||.+||..|++|
T Consensus 200 AGl~v~~li~EptAAAlay~~~~--~~~~~vlV~DlGgGT~DvSv~~~----~~g~~~v~a~~gd~~LGG~d~D~~l~~~ 273 (663)
T PTZ00400 200 AGLDVLRIINEPTAAALAFGMDK--NDGKTIAVYDLGGGTFDISILEI----LGGVFEVKATNGNTSLGGEDFDQRILNY 273 (663)
T ss_pred cCCceEEEeCchHHHHHHhcccc--CCCcEEEEEeCCCCeEEEEEEEe----cCCeeEEEecccCCCcCHHHHHHHHHHH
Confidence 99999999999999999999875 45789999999999999999998 6788999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|.+.++.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+..+..++.+.|||++|+++++++++++.++
T Consensus 274 l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~ 353 (663)
T PTZ00400 274 LIAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEP 353 (663)
T ss_pred HHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999988888888889999999999999999999999888888877655444568899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|+++++.+.+|+.|+||||+|++|+|+++|++.|+.++....||+++||+|||++|+++++..+++.+.|++|++|
T Consensus 354 i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~sl 433 (663)
T PTZ00400 354 CEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSL 433 (663)
T ss_pred HHHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhCCCcccCCCCccceeeccHHHHHhhcCCccceEEEeccccce
Confidence 99999999999999999999999999999999999999988888999999999999999999999888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
||++.++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|++|
T Consensus 434 gi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~id 513 (663)
T PTZ00400 434 GIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVD 513 (663)
T ss_pred EEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+|+|++.+..+|+...++++...++|++++++++++++++..+|+..+++.+++|.+|+++|.+++.+. ++.+.+
T Consensus 514 ~~Gil~v~a~~~~~~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--e~~~~~ 591 (663)
T PTZ00400 514 ANGIMNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLS--DLKDKI 591 (663)
T ss_pred CCCCEEEEEEeccCCcEEEEEeeccccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhC
Confidence 999999999999999999999987788999999999999999999999999999999999999999999986 477889
Q ss_pred ChhHHHHHHHHhccc
Q psy2902 630 SDSEKRIIYDQYGHA 644 (945)
Q Consensus 630 ~~~~k~~~~d~~~~~ 644 (945)
+++++.++.+.+.+.
T Consensus 592 s~~ere~i~~~l~~~ 606 (663)
T PTZ00400 592 SDADKDELKQKITKL 606 (663)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877654
|
|
| >PRK13411 molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-88 Score=803.21 Aligned_cols=566 Identities=56% Similarity=0.894 Sum_probs=530.1
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.+|.+.++.|.+|++.+||+|+|++++++++|..|..+...+|.++++++|||||++++++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~ 80 (653)
T PRK13411 1 MGKVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDT 80 (653)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccch
Confidence 55689999999999999999999999999999999999999987778999999999999999999999999999999886
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
. .....+||.++...++.+.+.+.+..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+.
T Consensus 81 ~--~~~~~~~~~~v~~~~~~~~~~i~~~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~~ 158 (653)
T PRK13411 81 E--EERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTI 158 (653)
T ss_pred h--HHhhcCCceEEecCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHHHH
Confidence 4 34578999999888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+.... ..+.++||||+||||+|+|++++ .++.++++++.|+.++||.+||..|++|
T Consensus 159 AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV~DlGgGT~dvsi~~~----~~~~~~V~at~gd~~LGG~dfD~~l~~~ 233 (653)
T PRK13411 159 AGLEVLRIINEPTAAALAYGLDKQ-DQEQLILVFDLGGGTFDVSILQL----GDGVFEVKATAGNNHLGGDDFDNCIVDW 233 (653)
T ss_pred cCCCeEEEecchHHHHHHhccccc-CCCCEEEEEEcCCCeEEEEEEEE----eCCEEEEEEEecCCCcCHHHHHHHHHHH
Confidence 999999999999999999988653 35678999999999999999999 6788999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|....+.++..+++++.+|+.+||++|+.||....+.+.++.+..+..++.++++.|||++|++++.|+++++..+
T Consensus 234 l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~ 313 (653)
T PRK13411 234 LVENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEP 313 (653)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHH
Confidence 99999988888888889999999999999999999999999998877654334467899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC-CCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccce
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG-KDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLS 468 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg-~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s 468 (945)
+.++|+++++...+|+.|+||||+||+|+|+++|++.|+ ..+....||++|||+|||++|+++++..+++.+.|++|++
T Consensus 314 i~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~~~~~~~~~dv~p~s 393 (653)
T PRK13411 314 MQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLS 393 (653)
T ss_pred HHHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcCCccceeeeecccce
Confidence 999999999999999999999999999999999999996 5677889999999999999999999988899999999999
Q ss_pred eeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEE
Q psy2902 469 LGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDI 548 (945)
Q Consensus 469 ~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~ 548 (945)
||+++.++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||.+.|.++|+.+.|.++|+|+|++
T Consensus 394 lgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~i 473 (653)
T PRK13411 394 LGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEI 473 (653)
T ss_pred eeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhc
Q psy2902 549 DANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEV 628 (945)
Q Consensus 549 d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~ 628 (945)
|.||+|+|++.+..+|++..+.+....+||++|+++++++++++..+|+..+++.+++|.+|++++.+++.+. +..+.
T Consensus 474 d~~Gil~v~a~d~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~--~~~~~ 551 (653)
T PRK13411 474 DVNGILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLK--ENGEL 551 (653)
T ss_pred CCCCeEEEEEeeccCCceEeeEEeccccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcc
Confidence 9999999999999999999888887778999999999999999999999999999999999999999999986 35688
Q ss_pred cChhHHHHHHHHhccc
Q psy2902 629 LSDSEKRIIYDQYGHA 644 (945)
Q Consensus 629 l~~~~k~~~~d~~~~~ 644 (945)
++++++.++.+.+.+.
T Consensus 552 ~~~~er~~i~~~l~~~ 567 (653)
T PRK13411 552 ISEELKQRAEQKVEQL 567 (653)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8999998888877653
|
|
| >PLN03184 chloroplast Hsp70; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-87 Score=792.88 Aligned_cols=565 Identities=55% Similarity=0.867 Sum_probs=528.4
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.+|.+.++.|..|++.+||+|+|..++++++|..|..+...+|.++++++|||||+++++
T Consensus 38 ~~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d- 116 (673)
T PLN03184 38 AEKVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE- 116 (673)
T ss_pred CCCEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch-
Confidence 4458999999999999999999999999999999999999998777899999999999999999999999999999875
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEE--CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISV--RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
++.....+||.++...++.+.+.+ .+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 117 -~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 117 -VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred -hhhhhhcCCeEEEecCCCcEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 456677899999988888877665 47889999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.|||+++++++||+|||++|+... ..+..+||||+||||+|+|++++ .++.++++++.++.++||.+||..|+
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~--~~~~~vlV~DlGgGT~DvSi~~~----~~~~~eVla~~gd~~LGG~dfD~~L~ 269 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEK--KSNETILVFDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIV 269 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhccc--CCCCEEEEEECCCCeEEEEEEEe----cCCEEEEEEecCCCccCHHHHHHHHH
Confidence 9999999999999999999998876 35678999999999999999998 67899999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
+|+.++|...++.++..+++++.+|+.+||++|+.||.+..+.+.++.+.....+..++++.|||++|++++.++++++.
T Consensus 270 ~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~ 349 (673)
T PLN03184 270 DWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCK 349 (673)
T ss_pred HHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHH
Confidence 99999999888888888999999999999999999999999999888765444344578999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccc
Q psy2902 388 EPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPL 467 (945)
Q Consensus 388 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~ 467 (945)
.+|.++|+.+++...+|+.|+||||+|++|.|+++|+++||..+....||++|||+|||++|+++++..+++.+.|++|+
T Consensus 350 ~~i~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~fg~~~~~~~npdeaVA~GAAi~aa~ls~~~~~~~~~dv~p~ 429 (673)
T PLN03184 350 TPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPL 429 (673)
T ss_pred HHHHHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHhCCCcccccCcchHHHHHHHHHHHHhccCccceEEEecccc
Confidence 99999999999999999999999999999999999999999888888999999999999999999998889999999999
Q ss_pred eeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEE
Q psy2902 468 SLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFD 547 (945)
Q Consensus 468 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~ 547 (945)
+|||++.++.+.+||++|++||++++++|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|+
T Consensus 430 slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~ 509 (673)
T PLN03184 430 SLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFD 509 (673)
T ss_pred cceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhh
Q psy2902 548 IDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYE 627 (945)
Q Consensus 548 ~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~ 627 (945)
+|.||+|+|++.+..++++..+++....+||++++++++++++++..+|+..+++.+++|.+|++++.+++++. ++.+
T Consensus 510 id~~GiL~V~a~~~~t~~~~~~~i~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~--e~~~ 587 (673)
T PLN03184 510 IDANGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLK--ELGD 587 (673)
T ss_pred eCCCCeEEEEEEecCCCeEEEEEecccccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHH--HHhh
Confidence 99999999999999999999999987778999999999999999999999999999999999999999999985 5677
Q ss_pred ccChhHHHHHHHHhccc
Q psy2902 628 VLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 628 ~l~~~~k~~~~d~~~~~ 644 (945)
.++++++.++.+.+.+.
T Consensus 588 ~~~~eer~~l~~~l~~~ 604 (673)
T PLN03184 588 KVPADVKEKVEAKLKEL 604 (673)
T ss_pred hCCHHHHHHHHHHHHHH
Confidence 88999988887776643
|
|
| >PRK00290 dnaK molecular chaperone DnaK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-86 Score=792.57 Aligned_cols=565 Identities=71% Similarity=1.074 Sum_probs=533.3
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++++|.++++.|..|++.+||+|+|..++++++|..|..+...+|.++++++||+||++ ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 5568999999999999999999999999999999999999998667899999999999999999999999999998 66
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
.++...+.+||.++...++...+.+++..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||+.
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa~~ 158 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKI 158 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHHHH
Confidence 78888889999999988888888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+... ..+.++||||+||||+|+|++++ .++.++++++.++..+||.+||.+|++|
T Consensus 159 AGl~v~~li~EptAAAl~y~~~~--~~~~~vlV~D~GggT~dvsv~~~----~~~~~~vla~~gd~~lGG~d~D~~l~~~ 232 (627)
T PRK00290 159 AGLEVLRIINEPTAAALAYGLDK--KGDEKILVYDLGGGTFDVSILEI----GDGVFEVLSTNGDTHLGGDDFDQRIIDY 232 (627)
T ss_pred cCCceEEEecchHHHHHHhhhcc--CCCCEEEEEECCCCeEEEEEEEE----eCCeEEEEEecCCCCcChHHHHHHHHHH
Confidence 99999999999999999998876 35789999999999999999999 6789999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|..+++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+..++.++.+.|||++|+++++++++++..+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~~ 312 (627)
T PRK00290 233 LADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIEP 312 (627)
T ss_pred HHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHHH
Confidence 99999998888888899999999999999999999999999988877654334468899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|+.+++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++..+++.+.|++|++|
T Consensus 313 i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeava~GAa~~aa~l~~~~~~~~~~d~~~~sl 392 (627)
T PRK00290 313 CKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSL 392 (627)
T ss_pred HHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHhCCCCCcCcCChHHHHHhHHHHHHHhcCCccceeeeeccceEE
Confidence 99999999999999999999999999999999999999998888999999999999999999999888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
||++.++.+.+||++|+++|++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|++|
T Consensus 393 gi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d 472 (627)
T PRK00290 393 GIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDID 472 (627)
T ss_pred EEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEEEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+|+|++.+..+|+..++++.....+|+++++++++++.++..+|+..+++.+++|.+|++++.+++.++ ++.+.+
T Consensus 473 ~~gil~v~a~~~~~~~~~~~~i~~~~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~--~~~~~~ 550 (627)
T PRK00290 473 ANGIVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLK--ELGDKV 550 (627)
T ss_pred CCceEEEEEEEccCCceeEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HHhccC
Confidence 999999999999999999999987778999999999999999999999999999999999999999999986 466788
Q ss_pred ChhHHHHHHHHhccc
Q psy2902 630 SDSEKRIIYDQYGHA 644 (945)
Q Consensus 630 ~~~~k~~~~d~~~~~ 644 (945)
+++++.++.+.+.+.
T Consensus 551 ~~~e~~~i~~~l~~~ 565 (627)
T PRK00290 551 PADEKEKIEAAIKEL 565 (627)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988887654
|
|
| >PTZ00009 heat shock 70 kDa protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-85 Score=777.30 Aligned_cols=563 Identities=52% Similarity=0.834 Sum_probs=520.9
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
.+||||||||||+||++.++.++++.|..|++.+||+|+|.++ .+++|..|..+...+|.++++++||+||++++++.+
T Consensus 5 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~-~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 5 PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred cEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCC-CEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 3799999999999999999999999999999999999999754 689999999999999999999999999999999999
Q ss_pred HhhhcCCCeeEEecCCCceEEEE--CC--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 152 QKDISLMPYKIVKADNGDAWISV--RG--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
+...+.+||.++...++...+.+ .+ ..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 99999999999887777666554 33 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.|||+++++++||+|||++|+.......+.++||||+||||+|+|++++ ..+.++++++.++..+||.+||.+|+
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~----~~~~~~v~a~~gd~~lGG~d~D~~l~ 239 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTI----EDGIFEVKATAGDTHLGGEDFDNRLV 239 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEE----eCCeEEEEEecCCCCCChHHHHHHHH
Confidence 99999999999999999999988764345788999999999999999999 67889999999999999999999999
Q ss_pred HHHHHHHHHHh-CCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKIN-GIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRT 386 (945)
Q Consensus 308 ~~l~~~~~~~~-~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 386 (945)
+|+.++|..++ +.++..+++++.+|+.+||++|+.||.+..+.+.++.+..+. ++++.|||++|++++.++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~----d~~~~itR~~fe~l~~~l~~~~ 315 (653)
T PTZ00009 240 EFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGI----DYNVTISRARFEELCGDYFRNT 315 (653)
T ss_pred HHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCc----eEEEEECHHHHHHHHHHHHHHH
Confidence 99999998776 467778899999999999999999999999999888765543 7899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC-CCCCCCCCCCchhhhhHHHhhhhccCC----CCceEE
Q psy2902 387 IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG-KDPRRDINPDEAVAVGAAIQGSVLSGD----RKDLLL 461 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg-~~~~~~~~p~~avA~GAa~~a~~~~~~----~~~~~~ 461 (945)
...+.++|+.++++..+|+.|+||||+||+|+|+++|+++|+ ..+....||++|||+|||++|+++++. .+++.+
T Consensus 316 ~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~ 395 (653)
T PTZ00009 316 LQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLL 395 (653)
T ss_pred HHHHHHHHHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEE
Confidence 999999999999999999999999999999999999999996 567788999999999999999999873 567889
Q ss_pred EeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCe
Q psy2902 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQ 541 (945)
Q Consensus 462 ~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~ 541 (945)
.|++|++||++..++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.+.++
T Consensus 396 ~dv~p~slgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~ 475 (653)
T PTZ00009 396 LDVTPLSLGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQ 475 (653)
T ss_pred EeecccccCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999889
Q ss_pred EEEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchh
Q psy2902 542 IEVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSL 620 (945)
Q Consensus 542 i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~ 620 (945)
|+|+|++|.||+|+|++.+..+|+...+++... ..+|+++++++++.+.++..+|+..+++.+++|.+|+++|++++.+
T Consensus 476 i~v~f~id~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L 555 (653)
T PTZ00009 476 IEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTL 555 (653)
T ss_pred EEEEEEECCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 999999999999999999999999988888744 5699999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccChhHHHHHHHHhcc
Q psy2902 621 KIKEAYEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 621 ~~~~~~~~l~~~~k~~~~d~~~~ 643 (945)
+..++.+.++++++.++.+.+.+
T Consensus 556 ~~~~~~~~~t~ee~~~l~~~l~~ 578 (653)
T PTZ00009 556 QDEKVKGKLSDSDKATIEKAIDE 578 (653)
T ss_pred hhhhhhccCCHHHHHHHHHHHHH
Confidence 75557788898888877666553
|
|
| >TIGR02350 prok_dnaK chaperone protein DnaK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-85 Score=778.17 Aligned_cols=562 Identities=66% Similarity=1.001 Sum_probs=527.9
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQ 152 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~~ 152 (945)
+||||||||||++|++.+|.+.++.|..|++.+||+|+|..++++++|..|..+...+|.++++++||+||+++ ++++
T Consensus 2 viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~~~ 79 (595)
T TIGR02350 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DEVT 79 (595)
T ss_pred EEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hHHH
Confidence 79999999999999999999999999999999999999987778999999999999999999999999999988 3466
Q ss_pred hhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCC
Q psy2902 153 KDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGL 232 (945)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl 232 (945)
...+.+||. +..+++...+.+++..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+.|||
T Consensus 80 ~~~~~~~~~-v~~~~~~~~~~v~~~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 158 (595)
T TIGR02350 80 EEAKRVPYK-VVGDGGDVRVKVDGKEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGL 158 (595)
T ss_pred HHhhcCCee-EEcCCCceEEEECCEEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 777889999 6667788889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 233 EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 233 ~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
+++++++||+|||++|+.... ..+.++||||+||||+|+|++++ .++.++++++.++..+||.+||..|++|+.+
T Consensus 159 ~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvsv~~~----~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~ 233 (595)
T TIGR02350 159 EVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEI----GDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233 (595)
T ss_pred ceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEEEEEe----cCCeEEEEEecCCcccCchhHHHHHHHHHHH
Confidence 999999999999999987653 45788999999999999999999 6789999999999999999999999999999
Q ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy2902 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRI 392 (945)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~ 392 (945)
+|.+.++.++..+++.+.+|+.+||++|+.||.+..+.+.++.+..+..+..++++.|||++|+++++++++++.+++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~~ 313 (595)
T TIGR02350 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVRQ 313 (595)
T ss_pred HHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888889999999999999999999999999988877654434457899999999999999999999999999
Q ss_pred HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccceeeEE
Q psy2902 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIE 472 (945)
Q Consensus 393 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~gi~ 472 (945)
+|+.+++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++..+++.+.|++|++||++
T Consensus 314 ~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~~~~~~~~~pdeava~GAa~~aa~l~~~~~~~~~~d~~~~~igi~ 393 (595)
T TIGR02350 314 ALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIE 393 (595)
T ss_pred HHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhCCcccCCcCcHHHHHHHHHHHHHHhcCCcccceeeecccceeEEE
Confidence 99999999999999999999999999999999999988888999999999999999999999888999999999999999
Q ss_pred EeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEECCCc
Q psy2902 473 TMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANG 552 (945)
Q Consensus 473 ~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d~~g 552 (945)
+.++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++++.+.+.++|+|+|++|.||
T Consensus 394 ~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f~~d~~G 473 (595)
T TIGR02350 394 TLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANG 473 (595)
T ss_pred ecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999988999999999999
Q ss_pred cEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChh
Q psy2902 553 ILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDS 632 (945)
Q Consensus 553 ~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~ 632 (945)
+|+|++.+..+|++..+++....++|+++++++++++.++..+|+..+++.+++|.+|+++|.++++++ +..+.++++
T Consensus 474 ~l~v~~~~~~~~~~~~~~i~~~~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~--~~~~~~~~~ 551 (595)
T TIGR02350 474 ILHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLK--EAGDKLPAE 551 (595)
T ss_pred eEEEEEEEccCCceEEEEeccccccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHH
Confidence 999999999999999999988788999999999999999999999999999999999999999999996 356788999
Q ss_pred HHHHHHHHhccc
Q psy2902 633 EKRIIYDQYGHA 644 (945)
Q Consensus 633 ~k~~~~d~~~~~ 644 (945)
+++++.+.+.+.
T Consensus 552 e~~~l~~~l~~~ 563 (595)
T TIGR02350 552 EKEKIEKAVAEL 563 (595)
T ss_pred HHHHHHHHHHHH
Confidence 999988877653
|
Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved. |
| >CHL00094 dnaK heat shock protein 70 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-85 Score=775.72 Aligned_cols=565 Identities=58% Similarity=0.900 Sum_probs=527.4
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+++||||||||||++|++.+|.+.++.|..|.+.+||+|+|.+++++++|..|..+...+|.++++++||+||+.+++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~- 79 (621)
T CHL00094 1 MGKVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE- 79 (621)
T ss_pred CCceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH-
Confidence 5568999999999999999999999999999999999999998777899999999999999999999999999998764
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEE--CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISV--RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
+......+||.++...++.+.+.+ .+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||
T Consensus 80 -~~~~~~~~~~~v~~~~~g~i~~~~~~~~~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 80 -ISEEAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred -HHhhhhcCCeEEEECCCCCEEEEEecCCeEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 555667799999987777777655 56789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.|||+++++++||+|||++|+... ..+..+||||+||||+|+|++++ .++.++++++.++..+||.+||..|+
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~--~~~~~vlV~DlGgGT~DvSv~~~----~~~~~~vla~~gd~~lGG~d~D~~l~ 232 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDK--KNNETILVFDLGGGTFDVSILEV----GDGVFEVLSTSGDTHLGGDDFDKKIV 232 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhcccc--CCCCEEEEEEcCCCeEEEEEEEE----cCCEEEEEEEecCCCcChHHHHHHHH
Confidence 9999999999999999999998875 35678999999999999999998 67889999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
+|+.++|.++++.++..+++.+.+|+.+||++|+.||....+.+.++.+..+..++.++...|||++|++++.++++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~ 312 (621)
T CHL00094 233 NWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCR 312 (621)
T ss_pred HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHH
Confidence 99999999988888888899999999999999999999998889888765443344578899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeeccc
Q psy2902 388 EPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPL 467 (945)
Q Consensus 388 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~ 467 (945)
.+++++|+++++...+|+.|+||||+|++|.|+++|+++||.++....||++|||+|||++|+++++..+++.+.|++|+
T Consensus 313 ~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~~pdeava~GAA~~aa~ls~~~~~~~~~d~~~~ 392 (621)
T CHL00094 313 IPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPL 392 (621)
T ss_pred HHHHHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhCCCcCcCCCchhHHHhhhHHHHHHhcCCccceeeeeeece
Confidence 99999999999999999999999999999999999999999888889999999999999999999998889999999999
Q ss_pred eeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEE
Q psy2902 468 SLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFD 547 (945)
Q Consensus 468 s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~ 547 (945)
+||+++.++.+.+|||+|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|.++|+.+.|.++|+|+|+
T Consensus 393 ~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~f~ 472 (621)
T CHL00094 393 SLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFD 472 (621)
T ss_pred eeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhh
Q psy2902 548 IDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYE 627 (945)
Q Consensus 548 ~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~ 627 (945)
+|.||+|+|++.+..+|+...+++....+||+++++++++++.++..+|+..+++.+++|.+|++++.+++++. ++.+
T Consensus 473 id~~Gil~v~~~~~~t~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~--~~~~ 550 (621)
T CHL00094 473 IDANGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLK--ELKD 550 (621)
T ss_pred ECCCCeEEEEEeeccCCceeeeeeccchhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHH--HHhc
Confidence 99999999999999999999998887778999999999999999999999999999999999999999999986 3667
Q ss_pred ccChhHHHHHHHHhccc
Q psy2902 628 VLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 628 ~l~~~~k~~~~d~~~~~ 644 (945)
.++++++.++.+.+.+.
T Consensus 551 ~~~~~~~~~~~~~l~~~ 567 (621)
T CHL00094 551 KISEEKKEKIENLIKKL 567 (621)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88999999988877653
|
|
| >TIGR01991 HscA Fe-S protein assembly chaperone HscA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-84 Score=762.45 Aligned_cols=551 Identities=44% Similarity=0.735 Sum_probs=509.9
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQ 152 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~~ 152 (945)
+||||||||||+||++.+|.++++.|..|.+.+||+|+|..++.+++|..|..+...+|.++++++||++|+++.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 4899999999999999999999999999999999999998777899999999999999999999999999998876432
Q ss_pred hhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCC
Q psy2902 153 KDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGL 232 (945)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl 232 (945)
...+||.++...++.+.+.+.+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++||+.|||
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~~AGl 157 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGL 157 (599)
T ss_pred --cccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 567899998888888888887778999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 233 EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 233 ~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
+++++++||+|||++|+... ..+.++||||+||||+|+|++++ .++.++++++.++..+||.+||..|++|+.+
T Consensus 158 ~v~~li~EPtAAAlay~~~~--~~~~~vlV~DlGgGT~DvSi~~~----~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~ 231 (599)
T TIGR01991 158 NVLRLLNEPTAAAVAYGLDK--ASEGIYAVYDLGGGTFDVSILKL----TKGVFEVLATGGDSALGGDDFDHALAKWILK 231 (599)
T ss_pred CceEEecCHHHHHHHHhhcc--CCCCEEEEEEcCCCeEEEEEEEE----cCCeEEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999998876 35788999999999999999999 6788999999999999999999999999997
Q ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy2902 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRI 392 (945)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~ 392 (945)
++ +.+...++..+.+|+.+||++|+.||....+.+.++. . ..++.++|||++|+++++++++++..++.+
T Consensus 232 ~~----~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~--~----g~~~~~~itr~efe~l~~~ll~~i~~~i~~ 301 (599)
T TIGR01991 232 QL----GISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTL--D----GKDFKGKLTRDEFEALIQPLVQKTLSICRR 301 (599)
T ss_pred hh----CCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEE--C----CcEEEEEEeHHHHHHHHHHHHHHHHHHHHH
Confidence 65 3444567889999999999999999999888887764 2 248899999999999999999999999999
Q ss_pred HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCC--CCceEEEeeccceee
Q psy2902 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGD--RKDLLLLDVTPLSLG 470 (945)
Q Consensus 393 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~--~~~~~~~~~~~~s~g 470 (945)
+|+.+++...+|+.|+||||+|++|+|+++|++.|+..+....||++|||.|||++|+.+++. ..++.+.|++|++||
T Consensus 302 ~L~~a~~~~~~id~ViLvGGssriP~V~~~l~~~f~~~~~~~~npdeaVA~GAai~a~~l~~~~~~~~~~l~dv~p~slg 381 (599)
T TIGR01991 302 ALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLG 381 (599)
T ss_pred HHHHcCCChhhCCEEEEECCcCCChHHHHHHHHHhCCCCCCCCCCcHHHHHHHHHHHHHhccccccCceEEEEeeeeeeE
Confidence 999999999999999999999999999999999999888889999999999999999999874 357899999999999
Q ss_pred EEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEECC
Q psy2902 471 IETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDA 550 (945)
Q Consensus 471 i~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d~ 550 (945)
|++.++.+.+||++|++||++++..|++..|+|+.+.|.||||++..+.+|..||++.|.++|+.+.|.++|+|+|++|.
T Consensus 382 i~~~~g~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~ 461 (599)
T TIGR01991 382 IETMGGLVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDA 461 (599)
T ss_pred EEecCCEEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccC
Q psy2902 551 NGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLS 630 (945)
Q Consensus 551 ~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~ 630 (945)
||+|+|+|.+..+|++..+.+....++|+++|+++.+++.++..+|+..+++.+.+|.++.+++.+++.+. +..+.++
T Consensus 462 ~gil~V~a~~~~t~~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 539 (599)
T TIGR01991 462 DGLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALA--ADGDLLS 539 (599)
T ss_pred CCeEEEEEEECCCCcEEEEecccccCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCC
Confidence 99999999999999999999887788999999999999999999999999999999999999998877764 2335788
Q ss_pred hhHHHHHHHHhccc
Q psy2902 631 DSEKRIIYDQYGHA 644 (945)
Q Consensus 631 ~~~k~~~~d~~~~~ 644 (945)
.+++.++.+.+.+.
T Consensus 540 ~~~~~~~~~~l~~~ 553 (599)
T TIGR01991 540 EDERAAIDAAMEAL 553 (599)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887776543
|
The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK. |
| >PRK05183 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-84 Score=764.63 Aligned_cols=562 Identities=44% Similarity=0.730 Sum_probs=513.0
Q ss_pred ccccchhhcccccccCCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCch
Q psy2902 55 ILDEDLKRILHARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNT 134 (945)
Q Consensus 55 ~~~~~~~~~~~~~~~m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~ 134 (945)
+.+|.++..+..+.. +||||||||||+||++.+|.++++.+..|++.+||+|+|+++ .+++|..|..+...+|.++
T Consensus 6 ~~~~~~~~~~~~~~~---~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~-~~~vG~~A~~~~~~~p~~t 81 (616)
T PRK05183 6 ISEPGQSAAPHQRRL---AVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLED-GIEVGYEARANAAQDPKNT 81 (616)
T ss_pred ecCCCCCCCcccCCe---EEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCC-CEEEcHHHHHhhHhCchhh
Confidence 345555555666655 899999999999999999999999999999999999999876 4899999999999999999
Q ss_pred hHHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCC
Q psy2902 135 IYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAY 214 (945)
Q Consensus 135 i~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~ 214 (945)
++++||++|+++++ ++.....+||.+....++.+.+.+.+..++|+++++++|++|++.|+.+++..+.++|||||++
T Consensus 82 i~~~KrliG~~~~d--~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~ 159 (616)
T PRK05183 82 ISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAY 159 (616)
T ss_pred HHHHHHHhCCCchh--hhhhhhcCCeEEEecCCCceEEEecCCeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCC
Confidence 99999999998875 3445567899988877888888887778999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCC
Q psy2902 215 FNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGD 294 (945)
Q Consensus 215 ~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~ 294 (945)
|++.||+++++||+.|||+++++++||+|||++|+... ..+.++||||+||||+|+|++++ ..+.++++++.++
T Consensus 160 f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~--~~~~~vlV~DlGGGT~DvSv~~~----~~~~~evlat~gd 233 (616)
T PRK05183 160 FDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDS--GQEGVIAVYDLGGGTFDISILRL----SKGVFEVLATGGD 233 (616)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEecchHHHHHHhhccc--CCCCEEEEEECCCCeEEEEEEEe----eCCEEEEEEecCC
Confidence 99999999999999999999999999999999998865 34788999999999999999998 6678999999999
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHH
Q psy2902 295 TFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAK 374 (945)
Q Consensus 295 ~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~ 374 (945)
.++||.+||..|++|+.+++. .+...++..+.+|+.+||++|+.||....+.+.++.+ ...|||++
T Consensus 234 ~~lGG~d~D~~l~~~~~~~~~----~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~----------~~~itr~e 299 (616)
T PRK05183 234 SALGGDDFDHLLADWILEQAG----LSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALW----------QGEITREQ 299 (616)
T ss_pred CCcCHHHHHHHHHHHHHHHcC----CCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecC----------CCeEcHHH
Confidence 999999999999999998775 3334678889999999999999999998888776421 22499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 375 LELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
|++++.++++++..++.++|+++++...+|+.|+||||+|++|+|+++|+++||..+....||++|||+|||++|+.+++
T Consensus 300 fe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg~~~~~~~npdeaVA~GAAi~a~~l~~ 379 (616)
T PRK05183 300 FNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAG 379 (616)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEECCcccChHHHHHHHHHhccCcCcCCCchHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999988888899999999999999999987
Q ss_pred C--CCceEEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCC
Q psy2902 455 D--RKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGI 532 (945)
Q Consensus 455 ~--~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~ 532 (945)
. ..++.+.|++|++|||++.+|.+.+||++|++||+++++.|++..|+|+.+.|.||||++..+.+|..||++.|.++
T Consensus 380 ~~~~~~~~l~dv~p~slgi~~~~g~~~~ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i 459 (616)
T PRK05183 380 NKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGI 459 (616)
T ss_pred ccccCceEEEeeccccccceecCCeEEEEEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCC
Confidence 4 45899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCeEEEEEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcce
Q psy2902 533 PPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESL 612 (945)
Q Consensus 533 ~~~~~~~~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~ 612 (945)
|+.+.|.++|+|+|++|.||+|+|+|.+..+|+...+.++.+.++|+++|+++++++.++..+|+..+++.+.+|.++.+
T Consensus 460 ~~~~~g~~~i~v~f~~d~~Gil~V~a~~~~~~~~~~~~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 539 (616)
T PRK05183 460 PPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERV 539 (616)
T ss_pred CCCCCCCccEEEEEEECCCCeEEEEEEEcCCCcEEEecccccccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987778999999999999999999999999999999999999
Q ss_pred eeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 613 IHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 613 ~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
++.+++.+. +..+.++.+++.++.+.+.+.
T Consensus 540 i~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~ 569 (616)
T PRK05183 540 LEALQAALA--ADGDLLSAAERAAIDAAMAAL 569 (616)
T ss_pred HHHHHHHHH--HhhccCCHHHHHHHHHHHHHH
Confidence 998888875 233578888888888776653
|
|
| >KOG0101|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-83 Score=715.02 Aligned_cols=562 Identities=51% Similarity=0.811 Sum_probs=531.7
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
.+||||||||+++++++.++..+++.|.+|++.+||+++|.++ +.++|..|..+...+|.++++++|+++|+.++++.+
T Consensus 8 ~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~-e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 8 VAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDT-ERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred ceeeEeccCccceeeeEcCCcceeeeccccCccccceeeeccc-ccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 4799999999999999999999999999999999999999876 789999999999999999999999999999999999
Q ss_pred HhhhcCCCeeEEecCCCceEEEEC--C--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVR--G--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
+.+++.|||++....++.+.+.+. + +.++|+++.++.|..+++.|+.+++..+.++|+|||++|++.||+++.+|+
T Consensus 87 ~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 87 QSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred HhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHH
Confidence 999999999999666666666653 2 578999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
.+|||+++++++||+|||++|+.........+|+|+|+||||+|++++.+ .++.+.+.++.++.++||.+||+.|+
T Consensus 167 ~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i----~gG~~~vkat~gd~~lGGedf~~~l~ 242 (620)
T KOG0101|consen 167 LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSL----EGGIFEVKATAGDTHLGGEDFDNKLV 242 (620)
T ss_pred HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEe----ccchhhhhhhcccccccchhhhHHHH
Confidence 99999999999999999999998877677889999999999999999999 66788999999999999999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
+|+..+|.++++.++..+.+++.+|+.+||.+|+.||+...+.+.++.+.++. ++...++|++|+.++.+++..+.
T Consensus 243 ~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~----d~~~~itrarfe~l~~dlf~~~~ 318 (620)
T KOG0101|consen 243 NHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSITRARFEELNADLFRSTL 318 (620)
T ss_pred HHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccc----cccceeehhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998887765 78899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh-CCCCCCCCCCCchhhhhHHHhhhhccC----CCCceEEE
Q psy2902 388 EPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-GKDPRRDINPDEAVAVGAAIQGSVLSG----DRKDLLLL 462 (945)
Q Consensus 388 ~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-g~~~~~~~~p~~avA~GAa~~a~~~~~----~~~~~~~~ 462 (945)
+++..+|+++.++..+|+.|+||||++++|.++..+++.| ++......||+++||+|||++|+.+++ ...++++.
T Consensus 319 ~~v~~~L~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~li 398 (620)
T KOG0101|consen 319 EPVEKALKDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLI 398 (620)
T ss_pred HHHHHHHHhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeee
Confidence 9999999999999999999999999999999999999999 556678899999999999999999988 35788999
Q ss_pred eeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeE
Q psy2902 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQI 542 (945)
Q Consensus 463 ~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i 542 (945)
|+.|.++||++.++.|.++|++|+.+|+.++++|++..|||+.+.|.||+|++.+.++|..+|.|.+.++|+.|+|.+.|
T Consensus 399 d~~pl~~gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~I 478 (620)
T KOG0101|consen 399 DVAPLSLGVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQI 478 (620)
T ss_pred ecccccccccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhh
Q psy2902 543 EVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLK 621 (945)
Q Consensus 543 ~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~ 621 (945)
+|+|.+|.+|+|.|+|.|..||+...++|.+. ..||.++|++|...++.+..+|...+.+.+++|.+|++++.++..++
T Consensus 479 evtfdiD~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~ 558 (620)
T KOG0101|consen 479 EVTFDIDANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVE 558 (620)
T ss_pred eEEEecCCCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhh
Confidence 99999999999999999999999999998876 46999999999999999999999999999999999999999888876
Q ss_pred hhhhhhccChhHHHHHHHHhccc
Q psy2902 622 IKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 622 ~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
. ..+.+++++++++.+.+.+.
T Consensus 559 ~--~~~~i~~~~~~~~~~~~~~~ 579 (620)
T KOG0101|consen 559 D--EKGKINEEDKQKILDKCNEV 579 (620)
T ss_pred h--hccccChhhhhhHHHHHHHH
Confidence 3 33899999999999998765
|
|
| >PRK01433 hscA chaperone protein HscA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-81 Score=730.79 Aligned_cols=539 Identities=38% Similarity=0.582 Sum_probs=475.6
Q ss_pred ccccccchhhcccccccCCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCC
Q psy2902 53 LKILDEDLKRILHARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132 (945)
Q Consensus 53 ~~~~~~~~~~~~~~~~~m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~ 132 (945)
+++.+|.++..++. |..+||||||||||+||++.++.++++.|..|++.+||+|+|+++ .+++|..|
T Consensus 4 ~~~~~~~~~~~~~~---~~~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~-~~~vG~~A--------- 70 (595)
T PRK01433 4 IEIREPEQADFKQE---RQIAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSN-NFTIGNNK--------- 70 (595)
T ss_pred EEecCCCCCCcccc---CceEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCC-CEEECchh---------
Confidence 45556655444442 344899999999999999999999999999999999999999755 58999876
Q ss_pred chhHHHHHhhCCCCCcH----HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEE
Q psy2902 133 NTIYAAKRLIGRKFNEK----EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAV 208 (945)
Q Consensus 133 ~~i~~~k~llg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~V 208 (945)
+++++||++|+++++. .+....+ ...........+.+.+..++|+++++++|++|++.|+.+++..+.++|
T Consensus 71 -ti~~~KrliG~~~~~~~~~~~~~~~~k----~~~~~~~~~~~~~~~~~~~speei~a~iL~~lk~~ae~~lg~~v~~aV 145 (595)
T PRK01433 71 -GLRSIKRLFGKTLKEILNTPALFSLVK----DYLDVNSSELKLNFANKQLRIPEIAAEIFIYLKNQAEEQLKTNITKAV 145 (595)
T ss_pred -hHHHHHHHhCCCchhhccchhhHhhhh----heeecCCCeeEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCcceEE
Confidence 7899999999988752 2222211 112223344566778899999999999999999999999999999999
Q ss_pred EEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEE
Q psy2902 209 ITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEV 288 (945)
Q Consensus 209 itVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~v 288 (945)
||||++|++.||+++++||+.|||+++++++||+|||++|+... .....+||||+||||+|+|++++ .++.+++
T Consensus 146 ITVPa~f~~~qR~a~~~Aa~~AGl~v~~li~EPtAAAlay~~~~--~~~~~vlV~DlGGGT~DvSi~~~----~~~~~~V 219 (595)
T PRK01433 146 ITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK--NQKGCYLVYDLGGGTFDVSILNI----QEGIFQV 219 (595)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEEecCcHHHHHHHhccc--CCCCEEEEEECCCCcEEEEEEEE----eCCeEEE
Confidence 99999999999999999999999999999999999999998875 34568999999999999999999 6789999
Q ss_pred EEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEE
Q psy2902 289 LSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNL 368 (945)
Q Consensus 289 l~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~ 368 (945)
+++.|+.++||++||.+|++|+.++|.. ..+.. .+..||++|+.||....... ..+
T Consensus 220 ~at~gd~~lGG~d~D~~l~~~~~~~~~~------~~~~~----~~~~~ekaK~~LS~~~~~~~--------------~~~ 275 (595)
T PRK01433 220 IATNGDNMLGGNDIDVVITQYLCNKFDL------PNSID----TLQLAKKAKETLTYKDSFNN--------------DNI 275 (595)
T ss_pred EEEcCCcccChHHHHHHHHHHHHHhcCC------CCCHH----HHHHHHHHHHhcCCCccccc--------------ceE
Confidence 9999999999999999999999988742 12222 23459999999998664211 168
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHh
Q psy2902 369 KITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 369 ~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~ 448 (945)
+|||++|+++++++++++..+++++|++++ ..+|+.|+||||+|++|+|+++|++.|+.++....||++|||+|||++
T Consensus 276 ~itr~efe~l~~~l~~~~~~~i~~~L~~a~--~~~Id~ViLvGGssriP~v~~~l~~~f~~~~~~~~npdeaVA~GAAi~ 353 (595)
T PRK01433 276 SINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILSDIDPDKAVVWGAALQ 353 (595)
T ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHhhcC--cccCcEEEEECCcccChhHHHHHHHHhCCCceecCCchHHHHHHHHHH
Confidence 999999999999999999999999999998 568999999999999999999999999998888999999999999999
Q ss_pred hhhccCCCCceEEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEE
Q psy2902 449 GSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFN 528 (945)
Q Consensus 449 a~~~~~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~ 528 (945)
|+.+++...++++.|++|+++||++.+|.+.+||++|++||+++++.|++..|+|+.+.|.||||++....+|..||++.
T Consensus 354 a~~l~~~~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~ 433 (595)
T PRK01433 354 AENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFE 433 (595)
T ss_pred HHHhhCCccceEEEEecccceEEEecCCEEEEEEECCCcccceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEE
Confidence 99998877889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCCCCCcCeEEEEEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhccc
Q psy2902 529 LEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNH 608 (945)
Q Consensus 529 i~~~~~~~~~~~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~ 608 (945)
|.++|+.+.|.++|+|+|++|.||+|+|+|.+..||+...+.|+.+.++|++|+++++++++++..+|...+++.+.+|.
T Consensus 434 l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~ 513 (595)
T PRK01433 434 LKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIE 513 (595)
T ss_pred EcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998777899999999999999999999999999999999
Q ss_pred CcceeeeccchhhhhhhhhccChhHHHHHHHHhcc
Q psy2902 609 GESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 609 ~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~ 643 (945)
++.+++..++.++ +..+.++.+++.++.+.+..
T Consensus 514 ~~~~~~~~~~~~~--~~~~~l~~~~~~~i~~~~~~ 546 (595)
T PRK01433 514 AEALIFNIERAIA--ELTTLLSESEISIINSLLDN 546 (595)
T ss_pred HHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHH
Confidence 9999988888775 34456788888887776554
|
|
| >COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-79 Score=709.88 Aligned_cols=541 Identities=63% Similarity=0.932 Sum_probs=510.3
Q ss_pred CceEEEEcCccceEEEEEeCC-ceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 71 SKIIGIDLGTTNSCVSIIEGS-QPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~~-~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
+.+||||||||||+||+++++ .+.++.|..|.+.+||+|+|..++++++|..|..++..+|.++++.+||++|+...
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~-- 82 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN-- 82 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC--
Confidence 358999999999999999988 79999999999999999999987789999999999999999999999999998611
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
.....+.+.++.++|+++++++|++|++.|+.+++..+..+||||||||++.||+++++|++.
T Consensus 83 -----------------~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~~i 145 (579)
T COG0443 83 -----------------GLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARI 145 (579)
T ss_pred -----------------CCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHHHH
Confidence 112456677789999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+.+.. .+..|||||+||||||+|++++ ..+.++++++.++.++||++||.+|++|
T Consensus 146 aGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~----~~g~~ev~at~gd~~LGGddfD~~l~~~ 219 (579)
T COG0443 146 AGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEI----GDGVFEVLATGGDNHLGGDDFDNALIDY 219 (579)
T ss_pred cCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEE----cCCEEEEeecCCCcccCchhHHHHHHHH
Confidence 999999999999999999999884 7889999999999999999999 5679999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|..+.+.++..+...+.+|+.+||++|+.||+...+.+.+++...+ .++..++||++||.++.+++.++...
T Consensus 220 ~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~----~~~~~~ltR~~~E~l~~dll~r~~~~ 295 (579)
T COG0443 220 LVMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGD----IDLLKELTRAKFEELILDLLERTIEP 295 (579)
T ss_pred HHHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhcccc----chhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99999998888999999999999999999999999999999999877654 36789999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|..++++..+|+.|+||||++|||.|++.+++.|+.++...+||+++||.|||++|+.+++..+++++.|++|+++
T Consensus 296 ~~~al~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~~~~~~~inpdeava~GAa~qa~~l~~~~~d~ll~Dv~plsl 375 (579)
T COG0443 296 VEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSL 375 (579)
T ss_pred HHHHHHHcCCChhhCceEEEccceeccHHHHHHHHHHhCccccccCCccHHHHHHHHHHHHhhcCcccCceEEeeeeecc
Confidence 99999999999999999999999999999999999999988999999999999999999999999888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
|+++.++.+..+|++|+.+|.++...|++..|+|+.+.+.+++|++....+|..+|.|.+.++|+.++|.++|+|+|.+|
T Consensus 376 gie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD 455 (579)
T COG0443 376 GIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDID 455 (579)
T ss_pred ccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+++|++.+..+|+...++|..+.++++++|+.|.+.++.+.+.|+..++..+.+|+++.+++..++.+. +.. .+
T Consensus 456 ~~gi~~v~a~~~~~~k~~~i~i~~~~~ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~--~~~-~~ 532 (579)
T COG0443 456 ANGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALK--EIV-KV 532 (579)
T ss_pred CCcceEeeeecccCCceEEEEEecCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHh--hhc-cC
Confidence 999999999999999999999998888999999999999999999999999999999999999998877775 344 77
Q ss_pred ChhHHHHHHHHhcc
Q psy2902 630 SDSEKRIIYDQYGH 643 (945)
Q Consensus 630 ~~~~k~~~~d~~~~ 643 (945)
+.++++++.+.+.+
T Consensus 533 ~~~~~~~~~~~~~~ 546 (579)
T COG0443 533 SEEEKEKIEEAITD 546 (579)
T ss_pred CHHHHHHHHHHHHH
Confidence 88888888777665
|
|
| >PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-77 Score=718.71 Aligned_cols=559 Identities=47% Similarity=0.777 Sum_probs=504.8
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQ 152 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~~ 152 (945)
|||||||||||+||++.++.++++.+..|++.+||+|+|.++ ++++|..|...+.++|.++++++|+|||++++++.++
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~-~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~ 79 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDN-ERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQ 79 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESS-CEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeee-cccCCcchhhhcccccccccccccccccccccccccc
Confidence 699999999999999999999999999999999999999876 8899999999999999999999999999999999999
Q ss_pred hhhcCCCeeEEecCCCceEEEEC--Ce--eeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHH
Q psy2902 153 KDISLMPYKIVKADNGDAWISVR--GK--KLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGR 228 (945)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 228 (945)
.+...+||.++..+++...+.+. +. .++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~ 159 (602)
T PF00012_consen 80 KEKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAE 159 (602)
T ss_dssp HHHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhccccccc
Confidence 99999999999888888877764 54 899999999999999999999999999999999999999999999999999
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
.|||+++++++||+|||++|+..... .++++||||+||||+|++++++ .++.+++++..++..+||.+||.+|++
T Consensus 160 ~agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dvs~~~~----~~~~~~v~~~~~~~~lGG~~~D~~l~~ 234 (602)
T PF00012_consen 160 LAGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDVSVVEF----SNGQFEVLATAGDNNLGGRDFDEALAE 234 (602)
T ss_dssp HTT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEEEEEEE----ETTEEEEEEEEEETTCSHHHHHHHHHH
T ss_pred ccccccceeecccccccccccccccc-cccceeccccccceEeeeehhc----ccccccccccccccccccceecceeec
Confidence 99999999999999999999877753 6889999999999999999999 567999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcC--CcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHH
Q psy2902 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSS--SKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRT 386 (945)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~--~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 386 (945)
|+.++|...++.+...+++.+.+|+.+||++|+.||. .....+.++.+.... .++.+.|||++|++++.++++++
T Consensus 235 ~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~---~~~~~~itr~~fe~l~~~~~~~~ 311 (602)
T PF00012_consen 235 YLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDG---EDFSITITREEFEELCEPLLERI 311 (602)
T ss_dssp HHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTT---EEEEEEEEHHHHHHHTHHHHHHT
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccccccccceeccccccccccc
Confidence 9999999998888888999999999999999999999 555566666555421 58999999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC--CCCceEEEee
Q psy2902 387 IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG--DRKDLLLLDV 464 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~--~~~~~~~~~~ 464 (945)
..++.++|++++.+..+|+.|+|+||+|++|+|++.|++.|+..+....||++|||+|||++|+.+++ ..+++.+.|+
T Consensus 312 ~~~i~~~l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~~~~~~~~~p~~aVA~GAa~~a~~~~~~~~~~~~~~~d~ 391 (602)
T PF00012_consen 312 IEPIEKALKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFGKKISKSVNPDEAVARGAALYAAILSGSFRVKDIKIIDV 391 (602)
T ss_dssp HHHHHHHHHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTTSEEB-SS-TTTHHHHHHHHHHHHHHTSCSSTSSCESEB
T ss_pred ccccccccccccccccccceeEEecCcccchhhhhhhhhccccccccccccccccccccccchhhhcccccccccccccc
Confidence 99999999999999999999999999999999999999999987888999999999999999999987 5678889999
Q ss_pred ccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEE
Q psy2902 465 TPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEV 544 (945)
Q Consensus 465 ~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v 544 (945)
+|++|||++.++.+.+++++|+++|...+..|.+..++|+.+.|.||+|+.....+|..||++.|.++++.+.+.++|+|
T Consensus 392 ~~~~~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v 471 (602)
T PF00012_consen 392 TPFSIGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKV 471 (602)
T ss_dssp ESSEEEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEE
T ss_pred ccccccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceee
Confidence 99999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhh
Q psy2902 545 TFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKE 624 (945)
Q Consensus 545 ~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~ 624 (945)
+|++|.+|+|+|++.+..++....+++.....+++++++++.++++++...|+..++..+++|.+|++++.+++.++.
T Consensus 472 ~f~ld~~Gil~V~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~-- 549 (602)
T PF00012_consen 472 TFELDENGILSVEAAEVETGKEEEVTVKKKETLSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEE-- 549 (602)
T ss_dssp EEEEETTSEEEEEEEETTTTEEEEEEEESSSSSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred EEeeeeeeehhhhhcccccccccccccccccccccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHh--
Confidence 999999999999999999999988898877679999999999999999999999999999999999999999998863
Q ss_pred hhhccChhHH-HHHHHHhc
Q psy2902 625 AYEVLSDSEK-RIIYDQYG 642 (945)
Q Consensus 625 ~~~~l~~~~k-~~~~d~~~ 642 (945)
.++.+..+++ .++.+...
T Consensus 550 ~~~~~~~~~~~~~l~~~~~ 568 (602)
T PF00012_consen 550 DKDFVSEEEKKKKLKETSD 568 (602)
T ss_dssp CGGGSTHHHHHHHHHHHHH
T ss_pred hhccCCHHHHHHHHHHHHH
Confidence 3788887776 45444433
|
Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B .... |
| >KOG0103|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-68 Score=583.91 Aligned_cols=560 Identities=31% Similarity=0.511 Sum_probs=506.9
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+ ++|||||..+|.+|+.+.++.++|.|+.+++.+|++++|..+ .+++|.+|..+...++.+++..+||++|+++++|
T Consensus 1 ms-vvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K-~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP 78 (727)
T KOG0103|consen 1 MS-VVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPK-NRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDP 78 (727)
T ss_pred CC-ceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccc-cceeeeccccceeecccccchhhhhhhccccCCh
Confidence 45 899999999999999999999999999999999999999876 7899999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEEC----CeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVR----GKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKD 225 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 225 (945)
+++.+...+|+.++...++.+.+.++ .+.+++++|++|+|.+++..++..+..++.++||+||+||++.||.++.+
T Consensus 79 ~~q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravld 158 (727)
T KOG0103|consen 79 EVQREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLD 158 (727)
T ss_pred HhhhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHh
Confidence 99999999999999999999888875 35799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccceecchhHHHHHHhccCCC-----CCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchH
Q psy2902 226 AGRIAGLEVKRIINEPTAAALAFGLDKS-----GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300 (945)
Q Consensus 226 Aa~~AGl~~v~li~Ep~AAAl~~~~~~~-----~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~ 300 (945)
||+.|||+.+++++|.+|+|++|+..+. ...+.+|+++|+|.+++.++++.+ ..+.+.++++.++..+||.
T Consensus 159 AA~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF----~kG~lkvl~ta~D~~lGgr 234 (727)
T KOG0103|consen 159 AARIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAF----TKGKLKVLATAFDRKLGGR 234 (727)
T ss_pred HHhhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeee----ccCcceeeeeecccccccc
Confidence 9999999999999999999999998765 234678999999999999999999 8899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHH
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVD 380 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~ 380 (945)
+||+.|.+|+.++|+.+++++++.++++..||+.+||++|+.||++....++++.++.+. +.+..|+|++||+++.
T Consensus 235 ~fDe~L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~----dvs~~i~ReEfEel~~ 310 (727)
T KOG0103|consen 235 DFDEALIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDK----DVSSKIKREEFEELSA 310 (727)
T ss_pred hHHHHHHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecc----hhhhhccHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998876 7889999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC--CCCc
Q psy2902 381 ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG--DRKD 458 (945)
Q Consensus 381 ~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~--~~~~ 458 (945)
|+++++..++..+|+++++...||+.|.+|||+||+|.|.++|+++||++..+++|.++|||+|||+++|++|+ ++.+
T Consensus 311 plL~rv~~p~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~Fgke~s~TlN~dEavarG~ALqcAIlSP~frVRe 390 (727)
T KOG0103|consen 311 PLLERVEVPLLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFFGKELSRTLNQDEAVARGAALQCAILSPTFRVRE 390 (727)
T ss_pred HHHHhhhHHHHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHhCCcccccccHHHHHHHhHHHHHHhcCcccccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 6788
Q ss_pred eEEEeeccceeeEEEe----C-CEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecC-cccccCCceEEEEEEcCC
Q psy2902 459 LLLLDVTPLSLGIETM----G-GIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGE-REMVSGNKILGEFNLEGI 532 (945)
Q Consensus 459 ~~~~~~~~~s~gi~~~----~-~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~-~~~~~~~~~lg~~~i~~~ 532 (945)
+.+.|+.|+++.+.|. + +....+|++|.++|..+..+|.... .|++.++++. ...+.....|++|.+.++
T Consensus 391 f~v~Di~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk~----~F~lea~yt~~~~lp~~~~kI~~~~i~~v 466 (727)
T KOG0103|consen 391 FSVEDIVPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRKG----PFTLEAKYTKVNKLPYPKPKIEKWTITGV 466 (727)
T ss_pred cceecccceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEecC----ceEEEEEeccccccCCCCCceeeEEeccc
Confidence 9999999999999864 3 5557899999999999888887654 4888888876 444445678999999998
Q ss_pred CCCCC-CcCeEEEEEEECCCccEEEEEee----------------------------cCCCc----eeEEEec--cCCCC
Q psy2902 533 PPALR-GIPQIEVTFDIDANGILHVTAKD----------------------------KKTGK----ENKITIK--ANSGL 577 (945)
Q Consensus 533 ~~~~~-~~~~i~v~~~~d~~g~l~v~a~~----------------------------~~~g~----~~~~~i~--~~~~~ 577 (945)
.+... ...++.|.+.++.+|+++|.-.- +..++ .+.+.+. ...++
T Consensus 467 ~~~~~ge~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l 546 (727)
T KOG0103|consen 467 TPSEDGEFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGAL 546 (727)
T ss_pred ccCccccccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeecccc
Confidence 77666 45679999999999999886310 00111 1223332 22469
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 578 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
+.++++..++++.+|...|+...++...+|.+|+|+|++++++. ..|.++.++.++.++...+.+.
T Consensus 547 ~~~~l~~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~-~~y~~f~~~a~~e~~~~~l~~~ 612 (727)
T KOG0103|consen 547 ITDELELYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLS-DKYEDFITDAEREKLKKMLTDT 612 (727)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhh-hhhhhhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998 4777889999998887777654
|
|
| >COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-69 Score=566.44 Aligned_cols=353 Identities=50% Similarity=0.877 Sum_probs=312.5
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
..-|++||.++.++++..+++|++. . ...+.++|++|++||++|||++||++||++|+.+++++++|++
T Consensus 14 k~As~~EIKkAYRkLA~kyHPD~n~---------g--~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~~gg~gg~ 82 (371)
T COG0484 14 KDASEEEIKKAYRKLAKKYHPDRNP---------G--DKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFKAGGFGGF 82 (371)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCCC---------C--CHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccccCCcCCC
Confidence 3568999999999999999999854 1 1134468999999999999999999999999999874333221
Q ss_pred -cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCc
Q psy2902 655 -ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733 (945)
Q Consensus 655 -~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~ 733 (945)
+++++.+|+|+|++|||++.+ .+.++.++.+|.|+.+.|+++|++++.|.++.+.+++..+|+.|+|+|....+..
T Consensus 83 g~~~fgg~~~DIF~~~FgGg~~---~~~~~~~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~ 159 (371)
T COG0484 83 GFGGFGGDFGDIFEDFFGGGGG---GRRRPNRPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDP 159 (371)
T ss_pred CcCCCCCCHHHHHHHhhcCCCc---ccCCCCCcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCC
Confidence 121222677888888863322 1222344678999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCceEeEee--ceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCC
Q psy2902 734 ISCFTCSGQGQVRMQQ--GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGL 811 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~--~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~ 811 (945)
.+|++|+|+|++++.+ |+++++.+|+.|+|.|++++++|..|+|.|.+.+.++++|+||+|+.+|++|++.|+|++..
T Consensus 160 ~tC~tC~G~G~v~~~~~~g~~~~~~~C~~C~G~G~~i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~ 239 (371)
T COG0484 160 KTCPTCNGSGQVRTVQRTGFFSFQQTCPTCNGTGKIIKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGP 239 (371)
T ss_pred CcCCCCCCcCeEEEEEeeeEEEEEEECCCCccceeECCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCC
Confidence 9999999999998888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCC
Q psy2902 812 NGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSS 891 (945)
Q Consensus 812 ~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~ 891 (945)
+++++|||||.|.|++|+.|.|+|+|||++++|++.+|+||++++||||||.+.+.||+++|+|+++||+|+|||..++.
T Consensus 240 ~Ggp~GDLyv~i~v~~h~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~ 319 (371)
T COG0484 240 NGGPAGDLYVFVHVKPHPIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSG 319 (371)
T ss_pred CCCCCccEEEEEEeecCCCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCC
Confidence 88889999999999999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred CCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 892 IPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 892 ~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
.+|||||+++|.+|+.||++|+++|++|+++..+ ...++| ++|.++|+||
T Consensus 320 ~~GDl~v~v~v~~P~~ls~~q~~lL~~~~~~~~~-~~~~~~---~~~~k~k~~f 369 (371)
T COG0484 320 GRGDLYVRVKVETPKNLSDEQKELLEEFAKSLGE-GPEQSP---GFFDKLKNFF 369 (371)
T ss_pred CcCCEEEEEEEEcCCCCCHHHHHHHHHHHHhhcc-ccccCh---hhhHHhHhhc
Confidence 7899999999999999999999999999998632 223233 8999999997
|
|
| >KOG0104|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-62 Score=539.88 Aligned_cols=558 Identities=28% Similarity=0.439 Sum_probs=482.5
Q ss_pred ceEEEEcCccceEEEEEeCCce-EEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQP-KVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~-~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
++++||+||.+++|+++.+|-| +++.|..++|++|++|+|. +++++||.+|.....++|..++.+++.|||+...++.
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk-~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~ 101 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFK-GGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPT 101 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEec-CCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcH
Confidence 4799999999999999999987 7888999999999999997 5589999999999999999999999999999999998
Q ss_pred HHhhhcCCC-eeEEecC-CCceEEEECC-eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 151 VQKDISLMP-YKIVKAD-NGDAWISVRG-KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 151 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
+....+.+| |.++.++ ...+.|.+.+ ..|+++++++|+|.+.+..|+.+...++.++|||||.+|++.+|.++.+||
T Consensus 102 v~ly~~~~p~~e~v~d~~rstV~F~i~d~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa 181 (902)
T KOG0104|consen 102 VDLYQKRFPFFELVEDPQRSTVVFKISDQEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAA 181 (902)
T ss_pred HHHHHhcCCceeecccCccceEEEEeCCccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHH
Confidence 877777766 5677664 7788999988 799999999999999999999999999999999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCC---CCCCceEEEEEeCCcceEEEEEEEEeec------CCceEEEEEecCCCCCc
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKS---GKSDRNIVVYDLGGGTFDVSIIEIADVD------GEKQFEVLSTNGDTFLG 298 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~---~~~~~~vlVvD~GggT~dvsv~~~~~~~------~~~~~~vl~~~~~~~lG 298 (945)
++||+++++||+|.+|||+.|++.+. ...+++++|||||+|++.++++.+.... ....+++++.+++..||
T Consensus 182 ~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLG 261 (902)
T KOG0104|consen 182 QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLG 261 (902)
T ss_pred HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccc
Confidence 99999999999999999999998864 4568899999999999999999986431 23689999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhC--CCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHH
Q psy2902 299 GEDFDQRIIDYILDEFNKING--IDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLE 376 (945)
Q Consensus 299 G~~iD~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e 376 (945)
|..|+.+|.+|+.+.|.+..+ .++..+++++++|.++|+++|..||++..+.+.++.+.++. |+...|||++||
T Consensus 262 G~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddi----DFr~kvTRe~fE 337 (902)
T KOG0104|consen 262 GLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDI----DFRLKVTREEFE 337 (902)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhcc----ccccceeHHHHH
Confidence 999999999999999998876 46788999999999999999999999999999999998876 899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCC-CCCCCCCCCchhhhhHHHhhhhccC-
Q psy2902 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK-DPRRDINPDEAVAVGAAIQGSVLSG- 454 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~-~~~~~~~p~~avA~GAa~~a~~~~~- 454 (945)
++|.++..++..+|.++|..+.++.++|+.|+|.||++|+|.||+.|.+..+. ++...+|.|||+|+||+++||.++.
T Consensus 338 elc~Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSks 417 (902)
T KOG0104|consen 338 ELCADLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSKS 417 (902)
T ss_pred HHHHHHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999975 5678899999999999999999987
Q ss_pred -CCCceEEEeeccceeeEEEeCC--------EEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEE
Q psy2902 455 -DRKDLLLLDVTPLSLGIETMGG--------IMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILG 525 (945)
Q Consensus 455 -~~~~~~~~~~~~~s~gi~~~~~--------~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg 525 (945)
.++++.+.|.+.|+|-++.... ....+|+++.++|..++.+|+.+.|+ |.+.+-.+.-. ..+-
T Consensus 418 FKvKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~ 489 (902)
T KOG0104|consen 418 FKVKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLT 489 (902)
T ss_pred ccccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCcc
Confidence 6788999999999998875432 23468999999999988878766653 44444333211 2234
Q ss_pred EEEEcCCCCC----CC---CcCeEEEEEEECCCccEEEEEeecC---------------------C--------------
Q psy2902 526 EFNLEGIPPA----LR---GIPQIEVTFDIDANGILHVTAKDKK---------------------T-------------- 563 (945)
Q Consensus 526 ~~~i~~~~~~----~~---~~~~i~v~~~~d~~g~l~v~a~~~~---------------------~-------------- 563 (945)
++.++++... +. ....|.++|.+|.+|++.|+..+.. +
T Consensus 490 ~velsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e 569 (902)
T KOG0104|consen 490 TVELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEE 569 (902)
T ss_pred EEEEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchh
Confidence 6667665432 11 1235999999999999988742110 0
Q ss_pred ---------Cc--------------------------------------eeEEEeccCC----CCcHHHHHHHHHHHHHh
Q psy2902 564 ---------GK--------------------------------------ENKITIKANS----GLTEEEIKKMVQSAEAN 592 (945)
Q Consensus 564 ---------g~--------------------------------------~~~~~i~~~~----~~~~~~i~~~~~~~~~~ 592 (945)
++ .+.+.|+..+ .|++..+....++++.+
T Consensus 570 ~ae~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~ 649 (902)
T KOG0104|consen 570 DAEEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDF 649 (902)
T ss_pred hhhhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHH
Confidence 00 0124555433 48899999999999999
Q ss_pred HHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 593 AEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 593 ~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
...++..-++.++-|.+|.+++.++..+...++.++..++|+..+.+.+.
T Consensus 650 ~~~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~ 699 (902)
T KOG0104|consen 650 VQKEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVS 699 (902)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHH
Confidence 99999999999999999999999999998888889999999988776554
|
|
| >PRK14288 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-58 Score=505.25 Aligned_cols=352 Identities=34% Similarity=0.625 Sum_probs=294.5
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|++||.+..++++..+++|+.. .+. .+.++|.+|++||++|+|+++|++||++|+.+++.+.++ +
T Consensus 13 ~~As~~eIkkayrkla~k~HPD~~~---------~~~--~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~~~~~~-~ 80 (369)
T PRK14288 13 KHSNQETIKKSYRKLALKYHPDRNA---------GDK--EAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGAS-Q 80 (369)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC---------Ccc--HHHHHHHHHHHHHHHhccHHHHHHHHHhcccccccCCCC-c
Confidence 3478999999999999999999732 111 234578899999999999999999999998877532111 1
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc
Q psy2902 655 ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI 734 (945)
Q Consensus 655 ~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~ 734 (945)
++ + .+|.+.|++||+++||+++.......+.++.|+.++|+++|+++|.|+++.+.+.+...|+.|+|+|.... ...
T Consensus 81 ~~-~-~~~f~~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~ 157 (369)
T PRK14288 81 SD-F-SDFFEDLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDK-ALE 157 (369)
T ss_pred cc-c-ccchhhHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCC-CCc
Confidence 11 1 11112233455554442211111122356889999999999999999999999999999999999999875 568
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
+|+.|+|+|.+.+..|+++++.+|+.|.|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++.++ +
T Consensus 158 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~-~ 236 (369)
T PRK14288 158 TCKQCNGQGQVFMRQGFMSFAQTCGACQGKGKIIKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEK-G 236 (369)
T ss_pred CCCCCCCCcEEEEEeceEEEEEecCCCCCCceEccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCC-C
Confidence 999999999998888999999999999999999999999999999999999999999999999999999999999664 6
Q ss_pred CCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcCCCCCCCC
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIKNIRSSIP 893 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~ 893 (945)
.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.+.||++++||++++|+|+|||..+...+
T Consensus 237 ~~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~ 316 (369)
T PRK14288 237 KRGDLYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPESSYR 316 (369)
T ss_pred CCCCEEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCC
Confidence 7899999999999999999999999999999999999999999999997 688899999999999999999997665568
Q ss_pred ccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcc---hhHHHHhhhcC
Q psy2902 894 GDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT---KTVLNKVKNFF 945 (945)
Q Consensus 894 Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 945 (945)
|||||+|+|.+|+.|+++|+++|++|+..... ..+|+. .++++.+++||
T Consensus 317 GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 368 (369)
T PRK14288 317 GSLIVELQVIYPKSLNKEQQELLEKLHASFGY---EGEPHKSVLETCISKIKDWF 368 (369)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHhhcCc---ccCccccchhhHHHHHHHhh
Confidence 99999999999999999999999999976321 223444 68899888887
|
|
| >PRK14298 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-57 Score=500.08 Aligned_cols=353 Identities=41% Similarity=0.726 Sum_probs=297.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC-
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS- 654 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~- 654 (945)
..|.+||.+..++++...++|+... -.+.++|.++++||++|+|+++|++||++|+.|++.+.++.+
T Consensus 16 ~a~~~eik~ayr~la~~~HPD~~~~------------~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~~ 83 (377)
T PRK14298 16 DASVEDIKKAYRKLAMKYHPDKNKE------------PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDI 83 (377)
T ss_pred CCCHHHHHHHHHHHHHHhCccccCC------------hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccccccCcccc
Confidence 4688999999999999999997321 112357788999999999999999999999887763221110
Q ss_pred -cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCc
Q psy2902 655 -ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733 (945)
Q Consensus 655 -~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~ 733 (945)
++.++.+|+|+|++|||+. +.+ ..+++.++.|++++|+++|++++.|.++.+.+.+...|+.|+|+|.......
T Consensus 84 ~~~~~~~~~~d~f~~~Fgg~----~~~-~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 158 (377)
T PRK14298 84 FRGADFGGFGDIFEMFFGGG----GRR-GRMGPRRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSP 158 (377)
T ss_pred cccCCcCcchhhhHhhhcCC----Ccc-CCCCCCCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCC
Confidence 0011123556666666531 111 1123456889999999999999999999999999999999999999988888
Q ss_pred ccCCCCCCCceEeEee----ceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCC
Q psy2902 734 ISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~----~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~ 809 (945)
.+|+.|+|+|.+.... |+++++.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||||+++|++|+|+|+|++
T Consensus 159 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~ 238 (377)
T PRK14298 159 KRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCHGRGQVIESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEA 238 (377)
T ss_pred CcCCCCCCccEEEEEEecCceeEEEEEeCCCCCCCCcccCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCC
Confidence 9999999999875443 667889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCC
Q psy2902 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIR 889 (945)
Q Consensus 810 ~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~ 889 (945)
.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||++.+.||+++++|++++|+|+|||..+
T Consensus 239 ~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~ 318 (377)
T PRK14298 239 GSPGAPSGDLYIVLHVKEHDYFERVGDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLH 318 (377)
T ss_pred CCCCCCCcCEEEEEEEecCCCeEEEcCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCC
Confidence 77777899999999999999999999999999999999999999999999999988999999999999999999999766
Q ss_pred CCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCC-CCCcchhHHHHhhhcC
Q psy2902 890 SSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFK-HNPRTKTVLNKVKNFF 945 (945)
Q Consensus 890 ~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 945 (945)
++.+|||||+|+|.+|+.|+++++++|+++++......++ ..++..++|.++++||
T Consensus 319 ~~~~GDL~V~~~V~~P~~ls~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (377)
T PRK14298 319 GHGKGDQLVKVIVKTPTKLTQEQKELLREFDELSNGKNPSKAGKKKKGIFDKVKDAF 375 (377)
T ss_pred CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcccccccccCcccccHHHHHHHHh
Confidence 5668999999999999999999999999998753211111 2245568999999887
|
|
| >PRK14277 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-57 Score=501.12 Aligned_cols=356 Identities=46% Similarity=0.830 Sum_probs=300.4
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCC-
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGS- 653 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~- 653 (945)
...|.+||.+..++++...++|+.. .+. .+.++|.++++||++|+|+++|++||.+|+.+++++..++
T Consensus 15 ~~a~~~eik~ayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14277 15 RNATEEEIKKAYRRLAKKYHPDLNP---------GDK--EAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFDPGGFGQG 83 (386)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCcCC---------Cch--HHHHHHHHHHHHHHHhCCHHHHHHHHhhccccccccccccC
Confidence 3578999999999999999999732 111 2335788999999999999999999999988775321110
Q ss_pred --C-cc----cc---cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCC
Q psy2902 654 --S-AS----AE---ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCY 723 (945)
Q Consensus 654 --~-~~----~~---~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~ 723 (945)
+ ++ ++ .++|.|+|++||+++||+++.+ ...++.++.|+++.|+++|+++|.|.++.+.+.+.+.|+.|+
T Consensus 84 ~~~~~g~~~~~~~~~~~~~~d~f~~~F~~~fgg~~~~-~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~ 162 (386)
T PRK14277 84 GFGQGGFGGGGFDFDFGGFGDIFEDIFGDFFGTGRRR-AETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCK 162 (386)
T ss_pred CcCCCCccccCccccccchhHHHHHhhcccccCCCcC-CCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCC
Confidence 0 11 00 1235577888888766532211 112245688999999999999999999999999999999999
Q ss_pred ccccccCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCe
Q psy2902 724 GNGAKKGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNM 799 (945)
Q Consensus 724 G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~ 799 (945)
|+|........+|+.|+|+|.+... .|+++...+|+.|+|.|.++.++|..|.|.|.+.+.++++|+||+|+++|+
T Consensus 163 G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~ 242 (386)
T PRK14277 163 GSGAKPGSKPVTCPVCHGTGQVRTRQNTPFGRIVNIRTCDRCHGEGKIITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQ 242 (386)
T ss_pred CCCcCCCCCCccCCCCCCEEEEEEEEeccCceEEEEEECCCCCcceeeccCCCCCCCCCcEEeeeeEEEEecCCCccCCc
Confidence 9999988888999999999987433 377777789999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEE
Q psy2902 800 RIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFR 879 (945)
Q Consensus 800 ~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~ 879 (945)
+++|+|+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||++.+.||+++++|++++
T Consensus 243 ~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~r 322 (386)
T PRK14277 243 MITLRGEGEPGIKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFR 322 (386)
T ss_pred EEEEccccccCCCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEE
Confidence 99999999997766678999999999999999999999999999999999999999999999998889999999999999
Q ss_pred ECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 880 LRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 880 i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
|+|+|||..+++.+|||||+|+|.||+.||++|+++|++|++.... ....+.++++.++++||
T Consensus 323 i~g~G~p~~~~~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l~~~~~~---~~~~~~~~~~~~~~~~~ 385 (386)
T PRK14277 323 LRGKGIPHLRGRGRGDQIVKVYIEVPKKLTEKQKELLREFEKLSGE---EGTESRKSFFQRMKDAF 385 (386)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhccc---ccCcccccHHHHHHHhh
Confidence 9999999766566899999999999999999999999999865321 12335568999999997
|
|
| >PRK14287 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=495.04 Aligned_cols=351 Identities=39% Similarity=0.735 Sum_probs=297.8
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++..+++|+.. . -.+.++|.++++||++|+|+++|++||++|+.+++.+.++++
T Consensus 14 ~~a~~~eik~ayr~la~~~HpD~~~---------~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~~~~~~~~ 81 (371)
T PRK14287 14 RNASVDEVKKAYRKLARKYHPDVNK---------A---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPNQGFGGGG 81 (371)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCC---------C---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccccccCCCC
Confidence 3578899999999999999999631 1 123357889999999999999999999999887754321111
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc
Q psy2902 655 ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI 734 (945)
Q Consensus 655 ~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~ 734 (945)
++ ++.+|.|+|++||++. ++. + ..+.+.++.|++++|+++|+++|.|.++.+.+.+...|+.|+|+|........
T Consensus 82 ~~-~f~~~~d~f~~~fgg~--~~~-~-~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~ 156 (371)
T PRK14287 82 AG-DFGGFSDIFDMFFGGG--GGR-R-NPNAPRQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPE 156 (371)
T ss_pred Cc-cccchHHHHHhhhccc--cCC-C-CCCCCCCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCc
Confidence 11 1123556777777532 111 1 11223468899999999999999999999999999999999999999888888
Q ss_pred cCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPG 810 (945)
Q Consensus 735 ~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~ 810 (945)
+|+.|+|+|.+.+. .|+++.+.+|+.|.|+|+++.++|..|.|.+.+.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 157 ~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~ 236 (371)
T PRK14287 157 TCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCEGTGKIIKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAG 236 (371)
T ss_pred ccCCCCCEEEEEEEEecCCceEEEEEeCCCCCCCCccccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCC
Confidence 99999999987543 37778889999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCC
Q psy2902 811 LNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRS 890 (945)
Q Consensus 811 ~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~ 890 (945)
++++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|++++|+|+||++.+.||+++++|+++||+|+|||..++
T Consensus 237 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~ 316 (371)
T PRK14287 237 VNGGPPGDLYVVFNVKPHEFFERDGDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHG 316 (371)
T ss_pred CCCCCCccEEEEEEEecCCCEEEecCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCC
Confidence 77678899999999999999999999999999999999999999999999999889999999999999999999998665
Q ss_pred CCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 891 SIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 891 ~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
+.+|||||+|+|.+|+.|+++|+++|++|++... ...+++..+++..+|+||
T Consensus 317 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~~---~~~~~~~~~~~~~~~~~~ 368 (371)
T PRK14287 317 RGQGDQHVQVRVVTPKNLTEKEKELMREFAGMSG---GRPDEQNDGFFAKVKRAF 368 (371)
T ss_pred CCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhhc---cccCcccccHHHHHHHHh
Confidence 6689999999999999999999999999986532 122455668999999886
|
|
| >PRK14296 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=494.10 Aligned_cols=337 Identities=32% Similarity=0.596 Sum_probs=282.8
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCC-CC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMS-GS 653 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~-g~ 653 (945)
...|++||.+..++++..+++|+. . + -.+.++|.++++||++|+|++||++||.+|+.+++.+.+ ++
T Consensus 14 ~~a~~~eik~ayrkla~~~HPD~n---------~-~--~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~~~~~~~~ 81 (372)
T PRK14296 14 KTASEQEIRQAYRKLAKQYHPDLN---------K-S--PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFDGSSGFSS 81 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC---------C-C--chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhcCCCCcCc
Confidence 346889999999999999999973 1 1 124468899999999999999999999999887653211 11
Q ss_pred C-ccc----------ccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCC
Q psy2902 654 S-ASA----------EASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSC 722 (945)
Q Consensus 654 ~-~~~----------~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C 722 (945)
+ +++ ++.+|+|+|++|| |+++. ..+++.++.|+++.+.++|++++.|.++.+.+.+...|+.|
T Consensus 82 ~~~~~~~~~~~~~~~g~~~f~d~f~~~f----ggg~~--~~~~~~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C 155 (372)
T PRK14296 82 NFGDFEDLFSNMGSSGFSSFTNIFSDFF----GSNKS--DYQRSTKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKC 155 (372)
T ss_pred CCCccccccccccccccccchhhhhhhc----CCCcc--CCCCcCCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCC
Confidence 1 110 0112344444444 32211 11234568899999999999999999999999999999999
Q ss_pred CccccccCcCcccCCCCCCCceEeEee--ce--eeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCC
Q psy2902 723 YGNGAKKGTSPISCFTCSGQGQVRMQQ--GF--FSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENN 798 (945)
Q Consensus 723 ~G~G~~~~~~~~~C~~C~G~G~~~~~~--~~--~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g 798 (945)
+|+|........+|+.|+|+|.+.+.+ |+ ++.+.+|+.|+|+|+++.++|..|.|.|.+.+.++++|.||+|+++|
T Consensus 156 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G 235 (372)
T PRK14296 156 FGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCNGAGKIIKNKCKNCKGKGKYLERKKIEVNIPKGIRPN 235 (372)
T ss_pred CCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcCCcceeecccccCCCCceEEEEEEEEEEEECCCCCCC
Confidence 999999888889999999999875433 43 35678999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCCccEEEEEEEecCCccccc-CCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcE
Q psy2902 799 MRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERD-GDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKI 877 (945)
Q Consensus 799 ~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~-g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~ 877 (945)
++|+|+|+|++.++++.+|||||+|++++|+.|+|+ |+||+++++|+|.|||+|+++.|+||||++.+.||++++||++
T Consensus 236 ~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~ 315 (372)
T PRK14296 236 QQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEIINNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNEL 315 (372)
T ss_pred CEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEeCCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcE
Confidence 999999999998766779999999999999999995 8999999999999999999999999999988899999999999
Q ss_pred EEECCCCcCCC-CCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcc
Q psy2902 878 FRLRGKGIKNI-RSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT 934 (945)
Q Consensus 878 ~~i~g~G~~~~-~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (945)
+||+|+|||.. +.+.+|||||+|+|.||+.||++|+++|++|++.. .++||.
T Consensus 316 ~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~l~~~~-----~~~~~~ 368 (372)
T PRK14296 316 IIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKEKELIEQIYEQT-----SFNPEN 368 (372)
T ss_pred EEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhc-----CCCchh
Confidence 99999999954 33568999999999999999999999999998752 467775
|
|
| >PRK14286 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-56 Score=494.84 Aligned_cols=338 Identities=42% Similarity=0.768 Sum_probs=288.9
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++..+++|+.. .+ ..+.++|.++++||++|+|+++|++||.+|+.+++.+.++++
T Consensus 14 ~~a~~~eik~ayr~la~~~HPD~~~---------~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~~~~~~~ 82 (372)
T PRK14286 14 KSANDEEIKSAYRKLAIKYHPDKNK---------GN--KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVNAGAGGFG 82 (372)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCCC---------Cc--hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhccccCCCC
Confidence 3468899999999999999999732 11 123458889999999999999999999999987753221111
Q ss_pred -ccc--c---cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccc
Q psy2902 655 -ASA--E---ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAK 728 (945)
Q Consensus 655 -~~~--~---~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~ 728 (945)
+++ + ..+|.|+|++||++.++++.......++.++.|++++|+++|++++.|+++.+.+.+.+.|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~ 162 (372)
T PRK14286 83 QGAYTDFSDIFGDFGDIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGAS 162 (372)
T ss_pred CCCcccccccccchhhHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcC
Confidence 110 0 1245566777776422111001111224568899999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCC
Q psy2902 729 KGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGE 808 (945)
Q Consensus 729 ~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~ 808 (945)
......+|+.|+|+|.+....|+++++.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+++|++|+|+|+|+
T Consensus 163 ~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~ 242 (372)
T PRK14286 163 KGSSPTTCPDCGGSGQIRRTQGFFSVATTCPTCRGKGTVISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGE 242 (372)
T ss_pred CCCCCccCCCCcCeEEEEEEeceEEEEEeCCCCCceeeEecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccc
Confidence 88888899999999999888899899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcCC
Q psy2902 809 PGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIKN 887 (945)
Q Consensus 809 ~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~~ 887 (945)
+.+++..+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||+ +.+.||+++++|+++||+|+|||.
T Consensus 243 ~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~ 322 (372)
T PRK14286 243 AGPNGGPHGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPY 322 (372)
T ss_pred cCCCCCCCceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCC
Confidence 9887677899999999999999999999999999999999999999999999997 678899999999999999999998
Q ss_pred CCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 888 IRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 888 ~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
.+.+.+|||||+|+|.||+.||++|+++|++|++..
T Consensus 323 ~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~ 358 (372)
T PRK14286 323 LGAYGKGDQHVIVKIEIPKKITRRQRELIEEFARES 358 (372)
T ss_pred CCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 665678999999999999999999999999999763
|
|
| >PRK14276 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=496.24 Aligned_cols=352 Identities=40% Similarity=0.714 Sum_probs=296.4
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCC--C
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSG--S 653 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g--~ 653 (945)
..|.+||.+..++++...++|+. .. ..+.++|.++++||++|+|+++|++||.+|+.+++.+.++ +
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~---------~~---~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~~~~~~~~~ 82 (380)
T PRK14276 15 DASQDEIKKAYRKLSKKYHPDIN---------KE---PGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGANGGFGGGAG 82 (380)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC---------CC---cCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCccccCCCCCCCC
Confidence 57899999999999998999863 21 1234578899999999999999999999999887643211 0
Q ss_pred C-ccc----ccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccc
Q psy2902 654 S-ASA----EASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAK 728 (945)
Q Consensus 654 ~-~~~----~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~ 728 (945)
+ +++ +..+|.|+|++||++. +.......+.++.|+.+.|+++|++++.|+++.+.+.+...|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~d~f~~~fgg~----~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~ 158 (380)
T PRK14276 83 GFGGFDGSGGFGGFEDIFSSFFGGG----GARRNPNAPRQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAK 158 (380)
T ss_pred CCCCccccccccchhhHHHHHhCcc----ccccCcCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccC
Confidence 1 111 1123556666666531 111111223568899999999999999999999999999999999999999
Q ss_pred cCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEc
Q psy2902 729 KGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRST 804 (945)
Q Consensus 729 ~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~ 804 (945)
......+|+.|+|+|.+.+. .|+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+++|++++|+
T Consensus 159 ~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~ 238 (380)
T PRK14276 159 PGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCHGTGKEIKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQ 238 (380)
T ss_pred CCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCCCCCccccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEe
Confidence 88888899999999987544 37777889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCC
Q psy2902 805 GNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKG 884 (945)
Q Consensus 805 g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G 884 (945)
|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+|+||++.+.||+++++|++++|+|+|
T Consensus 239 G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G 318 (380)
T PRK14276 239 GQGEAGFNGGPYGDLYVVFRVEPSKKFERDGSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKG 318 (380)
T ss_pred ccccCCCCCCCCcCEEEEEEEEECcceeeecceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEECCCC
Confidence 99999877667899999999999999999999999999999999999999999999999889999999999999999999
Q ss_pred cCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 885 IKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 885 ~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
||..+.+.+|||||+|+|.||+.||++|+++|++|+....+ ...+++..+++.++|+||
T Consensus 319 ~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 377 (380)
T PRK14276 319 APKLRGGGNGDQHVTVNIVTPTKLNDAQKEALKAFAKASGE--KDVNPKKKGFFDKVKDAF 377 (380)
T ss_pred cCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhccc--cccCcccccHHHHHHHHh
Confidence 99866566899999999999999999999999999875321 012345568899999886
|
|
| >PRK14284 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-56 Score=496.02 Aligned_cols=356 Identities=38% Similarity=0.706 Sum_probs=297.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCC-CC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSG-SS 654 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g-~~ 654 (945)
..|++||.+..++++..+++|+.. .+. .+.++|.++++||++|+|+++|++||++++.++..+.++ ++
T Consensus 12 ~a~~~eikkayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~~g~~~~~~ 80 (391)
T PRK14284 12 TASPEEIKKAYRKLAVKYHPDKNP---------GDA--EAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGPFAGAGGFGG 80 (391)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------Cch--HHHHHHHHHHHHHHHhcCHHHHHHHHhccccccccccCCcCC
Confidence 478999999999999999998732 111 134578889999999999999999999998876422111 00
Q ss_pred ccc-------------cc---ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecccccc
Q psy2902 655 ASA-------------EA---SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDI 718 (945)
Q Consensus 655 ~~~-------------~~---~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~ 718 (945)
+++ ++ ..+.|+|++||+++.+..+......++.++.+++++|+++|+++|.|+++.+.+.+...
T Consensus 81 ~g~~~~~~~~~~~~~~f~~~~~~~~d~f~~~fgg~g~~~~~~~~~~~~~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~ 160 (391)
T PRK14284 81 AGMGNMEDALRTFMGAFGGEFGGGGSFFEGLFGGLGEAFGMRGGPAGARQGASKKVHITLSFEEAAKGVEKELLVSGYKS 160 (391)
T ss_pred CCcCcccchhhhccccccccccccccchhhhccCccccccccccCCCcCCCCCeEEEEEEEHHHHhCCeeEEEEEeeecc
Confidence 110 00 01134555555432100000111122356889999999999999999999999999999
Q ss_pred CCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCC
Q psy2902 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENN 798 (945)
Q Consensus 719 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g 798 (945)
|+.|+|+|........+|+.|+|+|.+....|+++++.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||||+++|
T Consensus 161 C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G 240 (391)
T PRK14284 161 CDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGRVITDPCSVCRGQGRIKDKRSVHVHIPAGVDSG 240 (391)
T ss_pred CCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCcccCCcCCCCCCcceecceEEEEEEECCCCCCC
Confidence 99999999998888899999999999988889999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCC--CeEEEEeCCCCCCCc
Q psy2902 799 MRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLN--GKAFFVIPEGTQSGK 876 (945)
Q Consensus 799 ~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~--g~~~~~i~~~~~~g~ 876 (945)
++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+||| +.+.+.||+++++|+
T Consensus 241 ~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~ 320 (391)
T PRK14284 241 MRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDLILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGT 320 (391)
T ss_pred CEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCEEEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCe
Confidence 999999999998877789999999999999999999999999999999999999999999999 567889999999999
Q ss_pred EEEECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 877 IFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 877 ~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
+++|+|+|||..+++.+|||||+|+|.+|+.|+++|+++|++|++...+ ..+++..++|.++++||
T Consensus 321 ~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~l~~~~~~---~~~~~~~~~~~~~~~~~ 386 (391)
T PRK14284 321 ILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELLRQFAATEKA---ENFPKKRSFLDKIKGFF 386 (391)
T ss_pred EEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHHHHHHhhccc---ccCcccccHHHHHHHHH
Confidence 9999999999866567899999999999999999999999999875321 22456679999999886
|
|
| >PRK14297 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=495.73 Aligned_cols=354 Identities=39% Similarity=0.734 Sum_probs=298.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCC-CCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMS-GSS 654 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~-g~~ 654 (945)
..|.+||.+..++++...++|+.. ... .+.++|.++++||++|+|+++|++||++|+.+++.+++ +++
T Consensus 15 ~a~~~~ik~ayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~~~~~~~~~ 83 (380)
T PRK14297 15 GASDDEIKKAFRKLAIKYHPDKNK---------GNK--EAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFNGAGGFGSG 83 (380)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------CcH--HHHHHHHHHHHHHHHhcCHhhhCchhhcCcccccccCCCCCC
Confidence 468899999999999989998732 111 23457888999999999999999999999988763211 111
Q ss_pred c--ccc---cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccccc
Q psy2902 655 A--SAE---ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729 (945)
Q Consensus 655 ~--~~~---~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~ 729 (945)
+ ++. ..+|.|+|++||++.+++.+ .+...+.++.|++++|+++|+++|.|+++.+.+.+...|+.|+|+|...
T Consensus 84 ~~~~~~~~~~~~~~d~f~~~fgg~~g~~~--~~~~~~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 161 (380)
T PRK14297 84 GFGGFDFSDMGGFGDIFDSFFGGGFGSSS--RRRNGPQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKP 161 (380)
T ss_pred CCCCcCcccccchhHHHHHHhccCccccc--cccCCCCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccC
Confidence 1 111 02355777777765322211 1112235688999999999999999999999999999999999999998
Q ss_pred CcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcC
Q psy2902 730 GTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 730 ~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g 805 (945)
.....+|+.|+|+|.+.+. .|+++.+.+|+.|+|+|.++.++|..|.|.|.+.+.++++|+||+|+++|++|+|.|
T Consensus 162 ~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g 241 (380)
T PRK14297 162 GTSPKTCDKCGGTGQIRVQRNTPLGSFVSTTTCDKCGGSGKVIEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRG 241 (380)
T ss_pred CCcCccCCCccCeEEEEEEEEcCCceeEEEEeCCCCCCCceEcCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEec
Confidence 8888999999999987543 367788999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCc
Q psy2902 806 NGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGI 885 (945)
Q Consensus 806 ~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~ 885 (945)
+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+|+||++.+.||+++++|+++||+|+||
T Consensus 242 ~G~~~~~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~ 321 (380)
T PRK14297 242 QGEHGKNGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGV 321 (380)
T ss_pred CccCCCCCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCc
Confidence 99997766778999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCC-CcchhHHHHhhhcC
Q psy2902 886 KNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHN-PRTKTVLNKVKNFF 945 (945)
Q Consensus 886 ~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 945 (945)
|..+++.+|||||+|+|.||+.||++|+++|++++..... ..| .+..++|+++|+||
T Consensus 322 p~~~~~~~GDL~v~~~v~~P~~ls~~q~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 379 (380)
T PRK14297 322 PRVNSTGRGNQYVTVIVDIPKKLNSKQKEALTMFMEASGE---TVDGKEKKTIFEKIKKGF 379 (380)
T ss_pred CCCCCCCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHhcCc---ccCccccchHHHHHHHhh
Confidence 9766567899999999999999999999999999986421 111 24568999999997
|
|
| >PRK10767 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-56 Score=492.84 Aligned_cols=357 Identities=54% Similarity=0.968 Sum_probs=303.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++...++|+. .... .+.++|.++++||++|+++++|+.||.+++.++..+.++++
T Consensus 14 ~~as~~eik~ayr~la~~~HPD~~---------~~~~--~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~~~~~~~~ 82 (371)
T PRK10767 14 RNASEDEIKKAYRKLAMKYHPDRN---------PGDK--EAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFEQGGGGGG 82 (371)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCC---------CCcH--HHHHHHHHHHHHHHHhcchhhhhHhhhccccccccCCCCCC
Confidence 347889999999999999999963 1111 13357888999999999999999999999887754321111
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc
Q psy2902 655 ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI 734 (945)
Q Consensus 655 ~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~ 734 (945)
.+ +..+|.|+|++||+++||++++. ..+++.++.|++++|+++|+++|.|.++.+.+.+...|+.|+|+|........
T Consensus 83 ~~-~~~~~~~~f~~~f~~~fgg~~~~-~~~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~ 160 (371)
T PRK10767 83 FG-GGGGFGDIFGDIFGDIFGGGRGG-GRQRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPK 160 (371)
T ss_pred CC-CccccccchhhhhhhhccCCccc-cCCCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCc
Confidence 11 11234555666666665532111 11234578899999999999999999999999999999999999999888888
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
+|+.|+|+|.+....|+++++.+|+.|.|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++..+++
T Consensus 161 ~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 240 (371)
T PRK10767 161 TCPTCHGAGQVRMQQGFFTVQQTCPTCHGRGKIIKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGG 240 (371)
T ss_pred cCCCCCCeeEEEEeeceEEEEEeCCCCCCceeECCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCC
Confidence 99999999999888899899999999999999999999999999999999999999999999999999999999977667
Q ss_pred CCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCCCc
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPG 894 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~G 894 (945)
.+|||||+|++++|+.|+|+|+||++++.|+|.+||+|++++|+||||.+.+.||+++++|++++|+|+|||..+++.+|
T Consensus 241 ~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~G 320 (371)
T PRK10767 241 PAGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARG 320 (371)
T ss_pred CCcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCC
Confidence 89999999999999999999999999999999999999999999999988899999999999999999999986656789
Q ss_pred cEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 895 DLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 895 dl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
||||+|+|.+|+.|+++|+++|+++++.+. ....++|+...++.++++||
T Consensus 321 DL~v~~~v~~P~~l~~~~~~ll~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ 370 (371)
T PRK10767 321 DLYCQVVVETPVNLTKRQKELLEEFEESFE-SGEKHSPKSKGFFDKVKDFF 370 (371)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHHHhhhc-cccccCcccccHHHHHHHhh
Confidence 999999999999999999999999997521 12235777778888888886
|
|
| >PRK14280 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-56 Score=491.65 Aligned_cols=351 Identities=42% Similarity=0.761 Sum_probs=295.7
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC-
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS- 654 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~- 654 (945)
..|.+||.+..++++...++|+.. . -.+.++|.++++||++|+|+++|++||.+|+.+++.++++++
T Consensus 15 ~a~~~eik~ayr~la~~~HpD~~~---------~---~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~~~~~~~~~ 82 (376)
T PRK14280 15 SASKDEIKKAYRKLSKKYHPDINK---------E---EGADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPNQGFGGGGF 82 (376)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------C---ccHHHHHHHHHHHHHHhccHhHHHHHHhcCccccccCcCCCCC
Confidence 468899999999999999999631 1 123457888999999999999999999999987764321111
Q ss_pred c--ccc-cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCc
Q psy2902 655 A--SAE-ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT 731 (945)
Q Consensus 655 ~--~~~-~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~ 731 (945)
+ ++. +.+|.|+|++||++. + + +.....+.++.|+.++|+++|+++|.|+++.+.+.+...|+.|+|+|.....
T Consensus 83 ~~~~~~~~~~~~d~f~~~fgg~--~-~-~~~~~~~~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~ 158 (376)
T PRK14280 83 GGGDFGGGFGFEDIFSSFFGGG--G-R-RRDPNAPRQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGT 158 (376)
T ss_pred CCCCccccccchhhHHHHhCCc--c-c-cCcccccccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCC
Confidence 0 101 114556676666531 1 1 1111223468899999999999999999999999999999999999998888
Q ss_pred CcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCC
Q psy2902 732 SPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNG 807 (945)
Q Consensus 732 ~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G 807 (945)
...+|+.|+|+|.+.+. .|+++.+.+|+.|+|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|
T Consensus 159 ~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G 238 (376)
T PRK14280 159 SKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCNGTGQEIKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEG 238 (376)
T ss_pred CCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCCCCCceecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccc
Confidence 88899999999987543 36777888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCC
Q psy2902 808 EPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKN 887 (945)
Q Consensus 808 ~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~ 887 (945)
++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+||||++.+.||+++++|++++|+|+|||.
T Consensus 239 ~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~ 318 (376)
T PRK14280 239 EPGVNGGPAGDLYVVFRVRPHEFFERDGDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPN 318 (376)
T ss_pred cCCCCCCCCcCEEEEEEEecCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCC
Confidence 99877678899999999999999999999999999999999999999999999999888999999999999999999998
Q ss_pred CCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 888 IRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 888 ~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
..++.+|||||+|+|.||+.||++|+++|++|++... ...+++..+++..+++||
T Consensus 319 ~~~~~~GDL~v~~~v~~P~~Ls~~q~~~l~~l~~~~~---~~~~~~~~~~~~~~~~~~ 373 (376)
T PRK14280 319 VRGYGQGDQYVVVRVVTPTKLTDRQKELLREFAELSG---EEIDEQPSSFFDKAKRAF 373 (376)
T ss_pred CCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc---cccCcccccHHHHHHHHh
Confidence 6555789999999999999999999999999986532 112344458888888886
|
|
| >PRK14301 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-56 Score=491.87 Aligned_cols=346 Identities=44% Similarity=0.791 Sum_probs=292.6
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..++++...++|+.. .. ..+.++|.++++||++|+|+++|++||.+++.|+++++++++.
T Consensus 15 ~a~~~~ik~ayr~la~~~HPD~~~---------~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~~~~~~~g~ 83 (373)
T PRK14301 15 DASEDEIKKAYRKLALQYHPDRNP---------DN--PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVNGNGGFGGF 83 (373)
T ss_pred CCCHHHHHHHHHHHHHHhCCCcCC---------CC--hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccccCCCCCCc
Confidence 578899999999999999999732 11 1234578889999999999999999999998877532111110
Q ss_pred ccc---cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcC
Q psy2902 656 SAE---ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTS 732 (945)
Q Consensus 656 ~~~---~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~ 732 (945)
... ++.|.|+|++||++. +++ ..+...+.++.|+++.|+++|++++.|+++.+.+.+...|+.|+|+|......
T Consensus 84 ~~~~~~~~~f~d~f~~~fg~g--~~~-~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~ 160 (373)
T PRK14301 84 SSAEDIFSHFSDIFGDLFGFS--GGG-SRRGPRPQAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTS 160 (373)
T ss_pred ccccccccchHHHHHHHhhcc--Ccc-cccCCCCCCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCC
Confidence 000 123344555555311 111 01112245688999999999999999999999999999999999999998888
Q ss_pred cccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCC
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN 812 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~ 812 (945)
..+|+.|+|+|.+....|+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+++|++|+|+|+|++.++
T Consensus 161 ~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~ 240 (373)
T PRK14301 161 PETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGRVITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVH 240 (373)
T ss_pred CcccCCccCeeEEEEEeeeEEEEEeCCCCCceeeecCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCC
Confidence 88999999999998888988899999999999999999999999999999999999999999999999999999999877
Q ss_pred CCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCC
Q psy2902 813 GGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSI 892 (945)
Q Consensus 813 ~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~ 892 (945)
++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|++++|+||||++.+.||+++++|++++|+|+|||..+.+.
T Consensus 241 ~~~~GDLiv~i~v~~h~~f~r~G~DL~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~ 320 (373)
T PRK14301 241 GGPPGDLYVVITVEDDKIFQRQGQDLVVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQ 320 (373)
T ss_pred CCCCcCEEEEEEEEECCCceeecCcEEEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCCCC
Confidence 67789999999999999999999999999999999999999999999999988899999999999999999999866667
Q ss_pred CccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 893 PGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 893 ~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
+|||||+|+|.+|+.|+++|+++|++|+... ..+| ++++++||
T Consensus 321 ~GDL~I~~~V~~P~~l~~~q~~~l~~l~~~~-----~~~~-----~~~~~~~~ 363 (373)
T PRK14301 321 KGDLLVEVSVVTPTKLTKRQEELLREFEALE-----EEKP-----LEKVKKFF 363 (373)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHHhhc-----ccCH-----HHHHHHHH
Confidence 8999999999999999999999999999763 2234 46777775
|
|
| >PRK14278 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-56 Score=489.88 Aligned_cols=356 Identities=33% Similarity=0.612 Sum_probs=293.6
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++..+++|+... ..+.++|.++++||++|+|+++|++||.+|+.+...+..+++
T Consensus 13 ~~a~~~eik~ayr~la~~~hpD~~~~------------~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~~~~~~~~~~g 80 (378)
T PRK14278 13 RNASDAEIKRAYRKLARELHPDVNPD------------EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDPLESAGGGGGG 80 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCc------------HHHHHHHHHHHHHHHHhchhhhhhhhhccCCccccccCCCCC
Confidence 35789999999999999999987321 123357888999999999999999999998753321111111
Q ss_pred cccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc
Q psy2902 655 ASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI 734 (945)
Q Consensus 655 ~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~ 734 (945)
+++++.+|.|+|++||+++ + .+ +.....+.++.|+++.|+++|++++.|.++.+.+.+...|+.|+|+|........
T Consensus 81 ~~~~f~~~~d~f~~ffgg~-g-~~-~~~~~~~~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~ 157 (378)
T PRK14278 81 FGGGFGGLGDVFEAFFGGG-A-AS-RGPRGRVRPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPV 157 (378)
T ss_pred CCcCcCchhHHHHHHhCCC-C-CC-CCCccCCCCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCce
Confidence 0111123556777777532 1 11 1111123468899999999999999999999999999999999999999888888
Q ss_pred cCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPG 810 (945)
Q Consensus 735 ~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~ 810 (945)
+|+.|+|+|.+.+. .|+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|.||||+++|++|+|+|+|++.
T Consensus 158 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~ 237 (378)
T PRK14278 158 TCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCRGVGEVIPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVG 237 (378)
T ss_pred ecCCccCceEEEEEEeccceeEEEEEECCCCCccceeeCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCC
Confidence 99999999987543 36677788999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecC-CCeEEEEeCCCCCCCcEEEECCCCcCCCC
Q psy2902 811 LNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTL-NGKAFFVIPEGTQSGKIFRLRGKGIKNIR 889 (945)
Q Consensus 811 ~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l-~g~~~~~i~~~~~~g~~~~i~g~G~~~~~ 889 (945)
++++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|| +|.+.+.||+++++|++++|+|+|||..+
T Consensus 238 ~~~~~~GDL~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~ 317 (378)
T PRK14278 238 PGGGPAGDLYVEVHEQPHDVFVRDGDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLR 317 (378)
T ss_pred CCCCCCCCEEEEEEECcCCCEEEcCCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCC
Confidence 87777899999999999999999999999999999999999999999999 56678899999999999999999999765
Q ss_pred CCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCC--CCCCcchhHHHHhhhcC
Q psy2902 890 SSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGF--KHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 890 ~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 945 (945)
.+.+|||||+|+|.||+.||++|+++|++++.......+ ..+++..++++++++||
T Consensus 318 ~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (378)
T PRK14278 318 SGGRGDLHAHVEVVVPTRLDHEDIELLRELKALRGREVAEVRSTHAQGGLFSRLRETF 375 (378)
T ss_pred CCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhcCccccccccCcccccHHHHHHHHh
Confidence 567899999999999999999999999999864211100 11335568999999887
|
|
| >PRK14300 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-55 Score=486.45 Aligned_cols=354 Identities=40% Similarity=0.792 Sum_probs=299.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCC--CCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNM--SGS 653 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~--~g~ 653 (945)
..|.+||.+..++++..+++|+. .. -.+.++|.++++||++|+++++|++||.+|+.+++.+. +++
T Consensus 14 ~as~~eik~ayr~la~~~HPD~~---------~~---~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~~~~~~~~~ 81 (372)
T PRK14300 14 TASQADLKKAYLKLAKQYHPDTT---------DA---KDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQNQQSRGGG 81 (372)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC---------CC---cCHHHHHHHHHHHHHHhhhHhHhhHHHhccccccccccccCCC
Confidence 46789999999999998898862 11 11334788899999999999999999999988775321 111
Q ss_pred Cc-ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcC
Q psy2902 654 SA-SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTS 732 (945)
Q Consensus 654 ~~-~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~ 732 (945)
++ +++..+|+++|++||+++|++++.+.....+.++.++++.|.++|++++.|+++.+.+.+...|+.|+|+|......
T Consensus 82 g~~~~~~~~~~~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~ 161 (372)
T PRK14300 82 GNHGGFHPDINDIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGET 161 (372)
T ss_pred CCCCccccchhhhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCC
Confidence 10 11112455777778877655321111111124678999999999999999999999999999999999999998888
Q ss_pred cccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCC
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN 812 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~ 812 (945)
..+|+.|+|+|.+.+..|+++++.+|+.|+|.|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++..+
T Consensus 162 ~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~ 241 (372)
T PRK14300 162 VTTCDACSGVGATRMQQGFFTIEQACHKCQGNGQIIKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIR 241 (372)
T ss_pred CccCCCccCeEEEEEeeceEEEEEeCCCCCccceEeCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCC
Confidence 89999999999998888999999999999999999999999999999999999999999999999999999999999777
Q ss_pred CCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCC-eEEEEeCCCCCCCcEEEECCCCcCCCCCC
Q psy2902 813 GGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNG-KAFFVIPEGTQSGKIFRLRGKGIKNIRSS 891 (945)
Q Consensus 813 ~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g-~~~~~i~~~~~~g~~~~i~g~G~~~~~~~ 891 (945)
++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|+++.|+|+|| .+.+.||+++++|+++||+|+|||..++.
T Consensus 242 ~~~~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~ 321 (372)
T PRK14300 242 GGNSGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRST 321 (372)
T ss_pred CCCCCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCC
Confidence 77899999999999999999999999999999999999999999999998 67788999999999999999999976556
Q ss_pred CCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 892 IPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 892 ~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
.+|||||+|+|.||+.||++|+++|++|++.-.. .. .+...+++++|+||
T Consensus 322 ~~GDL~V~~~v~~P~~ls~~qk~~l~~l~~~~~~---~~-~~~~~~~~~~~~~~ 371 (372)
T PRK14300 322 IRGDMLTHIHVEVPKNLSKRQRELLEEFKKESIN---EK-ENDGSFFNKMKSLW 371 (372)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhccc---cc-cccccHHHHHHHhc
Confidence 7899999999999999999999999999864210 11 13447889999987
|
|
| >PRK14279 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-55 Score=487.30 Aligned_cols=335 Identities=36% Similarity=0.684 Sum_probs=283.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc----cCCCCC-
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA----GIDPNM- 650 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~----g~~~~~- 650 (945)
..|++||.+..++++..+++|+.. .+ ..+.++|.++++||++|+|++||++||.+++. ++.+..
T Consensus 20 ~a~~~eik~ayr~la~~~HPD~~~---------~~--~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~~~~~g~~~~~~ 88 (392)
T PRK14279 20 DASAEEIKKAYRKLARELHPDANP---------GD--PAAEERFKAVSEAHDVLSDPAKRKEYDETRRLFAGGGFGGRRF 88 (392)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------CC--hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhhccccccccccc
Confidence 467899999999999999999732 11 12345788899999999999999999999864 222110
Q ss_pred -C-CCCccc------ccccccccc-----------cccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEe
Q psy2902 651 -S-GSSASA------EASNFADAF-----------GDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSI 711 (945)
Q Consensus 651 -~-g~~~~~------~~~~f~d~f-----------~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~ 711 (945)
+ ++.+++ ...+|.++| +++|++||++++...+...+.++.|++++|+++|++++.|+++.+
T Consensus 89 ~~~~~~~g~~~~~~~~~~d~~~~f~~~~~~~~~~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v 168 (392)
T PRK14279 89 DGGGGFGGFGTGGDGAEFNLNDLFDAAGRGGGGGIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPL 168 (392)
T ss_pred cCCCCCCCccccccccCcChhhhhcccccccccchhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEE
Confidence 0 000010 012233333 245555554221111112345688999999999999999999999
Q ss_pred eccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEe
Q psy2902 712 RVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKI 791 (945)
Q Consensus 712 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~i 791 (945)
.+.+...|+.|+|+|........+|+.|+|+|.+....|+++++.+|+.|+|+|+++.++|..|.|.|.+.+.++++|.|
T Consensus 169 ~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~g~v~~~~~~~V~I 248 (392)
T PRK14279 169 RLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGVISRNQGAFGFSEPCTDCRGTGSIIEDPCEECKGTGVTTRTRTINVRI 248 (392)
T ss_pred eeeccccCCCCccccccCCCCCCCCCCCcceEEEEEEecceEEEEecCCCCceeEEeCCcCCCCCCCeEEEEeeeeEEEe
Confidence 99999999999999999888889999999999998888888899999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCC
Q psy2902 792 PAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEG 871 (945)
Q Consensus 792 p~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~ 871 (945)
|||+++|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|++++|+|+||++.+.||++
T Consensus 249 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g 328 (392)
T PRK14279 249 PPGVEDGQRIRLAGQGEAGLRGAPSGDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAG 328 (392)
T ss_pred CCCCCCCcEEEEeCCccCCCCCCCCCCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCC
Confidence 99999999999999999988777789999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHh
Q psy2902 872 TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETS 922 (945)
Q Consensus 872 ~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~ 922 (945)
+++|+++||+|+|||.. .+.+|||||+|+|.||+.||++|+++|++|+..
T Consensus 329 ~~~g~~iri~g~G~p~~-~~~~GDL~I~~~v~~P~~Ls~~q~~~l~~~~~~ 378 (392)
T PRK14279 329 TADGRILRVRGRGVPKR-SGGAGDLLVTVKVAVPPNLDGAAAEALEAYAEA 378 (392)
T ss_pred CCCCCEEEECCCCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 99999999999999973 456899999999999999999999999999875
|
|
| >PRK14294 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-55 Score=484.31 Aligned_cols=347 Identities=43% Similarity=0.791 Sum_probs=294.7
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..++++..+++|+.. ... .+.+.|.++++||++|+|+++|++||.+|+.|++++..++.+
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~---------~~~--~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~~~~~~~~~ 83 (366)
T PRK14294 15 DASEEEIKKSYRKLAMKYHPDRNP---------GDK--EAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLSGTGFSGFS 83 (366)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC---------Cch--HHHHHHHHHHHHHHHhccHHHHHHHHhhccccccCCCCCCcC
Confidence 478899999999999999999732 111 123467788999999999999999999999887632111111
Q ss_pred cc--ccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCc
Q psy2902 656 SA--EASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733 (945)
Q Consensus 656 ~~--~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~ 733 (945)
++ .+++|+|+|++||+. ++++.......+.++.|++++|+++|+++|.|.++.+.+.+...|+.|+|+|.......
T Consensus 84 ~~~~~~~~~~d~f~~~fg~--g~~~~~~~~~~~~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~ 161 (366)
T PRK14294 84 GFDDIFSSFGDIFEDFFGF--GGGRRGRSRTAVRAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSP 161 (366)
T ss_pred ccccchhhhhhhHHHhhcc--CCCcCCcccCCCCCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCc
Confidence 11 012355666666651 11110011112356889999999999999999999999999999999999999988888
Q ss_pred ccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCC
Q psy2902 734 ISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNG 813 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~ 813 (945)
.+|+.|+|+|.+....|+++++.+|+.|+|+|+++.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++.+++
T Consensus 162 ~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~ 241 (366)
T PRK14294 162 TTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGKVIVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRG 241 (366)
T ss_pred ccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCeecCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCC
Confidence 99999999999887778888999999999999999999999999999999999999999999999999999999998777
Q ss_pred CCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCCC
Q psy2902 814 GSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIP 893 (945)
Q Consensus 814 ~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~ 893 (945)
+.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||+..+.||+++++|++++|+|+|||..+.+.+
T Consensus 242 ~~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~ 321 (366)
T PRK14294 242 GPPGDLYVFLTVEPHEFFERDGNDVHCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGGR 321 (366)
T ss_pred CCCCcEEEEEEEccCCcceecCCCEEEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCCCCC
Confidence 78999999999999999999999999999999999999999999999999889999999999999999999997665568
Q ss_pred ccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 894 GDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 894 Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
|||||+|+|.+|+.|+++|+++|++|++... + ..++++++||
T Consensus 322 GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~~------~----~~~~~~~~~~ 363 (366)
T PRK14294 322 GDQIIEVEVKVPTRLTKKQEELLTEFARLES------E----KIGNKLRNLF 363 (366)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHHHHhcc------c----cHHHHHHHHh
Confidence 9999999999999999999999999997631 1 4468888887
|
|
| >PRK14285 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-55 Score=483.86 Aligned_cols=334 Identities=38% Similarity=0.705 Sum_probs=286.7
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCC--C
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMS--G 652 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~--g 652 (945)
...|.+||.+..+++....++|+.. ... .+.++|.++++||++|+|+++|++||.+++.+++++++ +
T Consensus 13 ~~a~~~eIk~ayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~~~~~~~~ 81 (365)
T PRK14285 13 KGASKDEIKKAYRKIAIKYHPDKNK---------GNK--EAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFEGGGGFEG 81 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC---------CCH--HHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhccCCCccc
Confidence 3578999999999999999999732 111 13357889999999999999999999999887753321 1
Q ss_pred CCcccc-----cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccc
Q psy2902 653 SSASAE-----ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGA 727 (945)
Q Consensus 653 ~~~~~~-----~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~ 727 (945)
..+++. ..+|+|+|++||++..+ +.+.+.+.++.|++++++++|++++.|.++.+.+.+...|+.|+|+|.
T Consensus 82 ~~~g~~~~~~~~~~~~d~f~~~fgg~~~----~~~~~~~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~ 157 (365)
T PRK14285 82 FSGGFSGFSDIFEDFGDIFDSFFTGNRG----QDKNRKHEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKS 157 (365)
T ss_pred cCCCccccccccccHHHHHHHhhcCCcC----CCCCcCCCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCccc
Confidence 101110 12344555555543111 111122356889999999999999999999999999999999999999
Q ss_pred ccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCC
Q psy2902 728 KKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNG 807 (945)
Q Consensus 728 ~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G 807 (945)
.......+|+.|+|+|.+.+.+|+++++.+|+.|.|.|+++.++|..|.|.|.+.+.++++|+||||+++|++|+|+|+|
T Consensus 158 ~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G 237 (365)
T PRK14285 158 EKGTSPSICNMCNGSGRVMQGGGFFRVTTTCPKCYGNGKIISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKG 237 (365)
T ss_pred CCCCCCccCCCccCceeEEecCceeEEeeecCCCCCcccccCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeecc
Confidence 98888889999999999988889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcC
Q psy2902 808 EPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIK 886 (945)
Q Consensus 808 ~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~ 886 (945)
++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||+ +.+.||+++++|++++|+|+|||
T Consensus 238 ~~~~~~~~~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p 317 (365)
T PRK14285 238 SVNPDNQQYGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMP 317 (365)
T ss_pred ccCCCCCCCCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCcc
Confidence 99887677899999999999999999999999999999999999999999999995 67889999999999999999999
Q ss_pred CCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 887 NIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 887 ~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
..+...+|||||+|+|.+|+.|+++|+++|++|+...
T Consensus 318 ~~~~~~~GDL~V~~~v~~P~~l~~~q~~~l~~l~~~~ 354 (365)
T PRK14285 318 ILHTEKFGNLILIIKIKTPKNLNSNAIKLLENLSKEL 354 (365)
T ss_pred CCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 7665567999999999999999999999999999874
|
|
| >PRK14295 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-55 Score=483.15 Aligned_cols=349 Identities=36% Similarity=0.721 Sum_probs=294.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHH----hccccCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQ----YGHAGIDPNM 650 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~----~~~~g~~~~~ 650 (945)
...|.+||.+..++++..+++|+.. .. ..+.++|.++++||++|+|+++|++||+ +|+.|+.++.
T Consensus 19 ~~a~~~eik~ayr~la~~~HPD~~~---------~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~~~~ 87 (389)
T PRK14295 19 KDATEAEIKKAYRKLAREYHPDANK---------GD--AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFRPGP 87 (389)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCcCC---------Cc--hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccccCC
Confidence 3578999999999999999999732 11 1234578889999999999999999998 8887775321
Q ss_pred CCC-Ccccc---------------cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecc
Q psy2902 651 SGS-SASAE---------------ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVP 714 (945)
Q Consensus 651 ~g~-~~~~~---------------~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~ 714 (945)
+++ ++++. +.+|++.|+++|+++|++++ + ...+.++.|++++|+++|+++|.|+++.+.+.
T Consensus 88 ~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~f~d~f~~~fg~~~-~--~~~~~~g~di~~~l~lsLee~~~G~~k~i~~~ 164 (389)
T PRK14295 88 GGGGGGGFNFDLGDLFGGGAQGGGGAGGGGGLGDVFGGLFNRGG-R--RTQPRRGADVESEVTLSFTEAIDGATVPLRLT 164 (389)
T ss_pred CCCCCCCCCcccccccccccccccccccccchhhhhcccccCCC-C--CCCCCCCCCEEEEEEEEHHHHhCCceEEEEee
Confidence 100 00000 00111224455555554321 1 12234688999999999999999999999999
Q ss_pred ccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecC
Q psy2902 715 SWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAG 794 (945)
Q Consensus 715 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G 794 (945)
+...|+.|+|+|........+|+.|+|+|.+....|+++++.+|+.|+|+|.++.++|..|.|.|.+.+.++++|+||+|
T Consensus 165 r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~~~~~~~l~V~Ip~G 244 (389)
T PRK14295 165 SQAPCPACSGTGAKNGTTPRVCPTCSGTGQVSRNSGGFSLSEPCPDCKGRGLIADDPCLVCKGSGRAKSSRTMQVRIPAG 244 (389)
T ss_pred ccccCCCCcccccCCCCCCcCCCCCCCEeEEEEEecceEEEEecCCCcceeEEeccCCCCCCCCceEeeeeEEEEEeCCC
Confidence 99999999999999888889999999999988777888889999999999999999999999999999999999999999
Q ss_pred CCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCC-eEEEEeCCCCC
Q psy2902 795 IENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNG-KAFFVIPEGTQ 873 (945)
Q Consensus 795 ~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g-~~~~~i~~~~~ 873 (945)
+++|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|++++|+|||| .+.+.||++++
T Consensus 245 ~~~G~~i~l~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~ 324 (389)
T PRK14295 245 VSDGQRIRLRGKGAPGERGGPAGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTP 324 (389)
T ss_pred CCCCCEEEEcccccCCCCCCCCccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccC
Confidence 99999999999999987767789999999999999999999999999999999999999999999999 57888999999
Q ss_pred CCcEEEECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhh
Q psy2902 874 SGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKN 943 (945)
Q Consensus 874 ~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 943 (945)
+|+++||+|+|||.. ++.+|||||+|+|.||+.||++|+++|++|+.... .++|+. +++.++|.
T Consensus 325 ~g~~iri~G~G~p~~-~~~~GDL~i~~~v~~P~~Ls~~qk~~l~~l~~~~~----~~~~~~-~~~~~~~~ 388 (389)
T PRK14295 325 NGRVLRVRGKGAVRK-DGTRGDLLVTVEVAVPKDLSGKAREALEAFREATA----DEDPRA-ELFQAAKG 388 (389)
T ss_pred CCcEEEECCCCcCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc----Ccchhh-HHHHHhhc
Confidence 999999999999974 45689999999999999999999999999998642 256774 88888875
|
|
| >PRK14281 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-55 Score=486.09 Aligned_cols=358 Identities=34% Similarity=0.652 Sum_probs=293.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCC--CC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMS--GS 653 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~--g~ 653 (945)
..|.+||.+..++++..+++|+.. ... .+.++|.++++||++|+|+++|++||.+++.+++++.. ++
T Consensus 14 ~a~~~eikkayr~la~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~~~~~~~~~ 82 (397)
T PRK14281 14 SADKDEIKKAYRKLALKYHPDKNP---------DNK--EAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVGSSAASGGG 82 (397)
T ss_pred CCCHHHHHHHHHHHHHHHCCCcCC---------Cch--HHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhccccccCCC
Confidence 468899999999999999999732 111 12357888999999999999999999999887753211 11
Q ss_pred Cc-cccccccccccc---ccccccC--------------CCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc
Q psy2902 654 SA-SAEASNFADAFG---DIFGDIF--------------GSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS 715 (945)
Q Consensus 654 ~~-~~~~~~f~d~f~---~~F~~~~--------------g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~ 715 (945)
++ +.++.+|+|+|+ +||++.. +++..+.....+.++.|+++.|+++|++++.|+++.+.+.+
T Consensus 83 ~~~~~~~~~~~d~f~~f~~~Fgg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~~~i~~~r 162 (397)
T PRK14281 83 PGYGGGGGDFNDIFSAFNDMFGGGARRGGGSPFGFEDVFGGGGRRRRASAGIPGTDLKIRLKLTLEEIAKGVEKTLKIKK 162 (397)
T ss_pred CCCCcCCCCHHHHHHHHHHHhCCCcccccccccccccccCCCcccccccCCCCCCCEEEEEEeEHHHHhCCeEEEEEEEe
Confidence 10 011123455553 5665321 00000000012246889999999999999999999999999
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEe
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKI 791 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~i 791 (945)
...|+.|+|+|.... ...+|+.|+|+|.+.+. .|+++.+.+|+.|+|.|.++.++|..|.|.|.+.+.++++|+|
T Consensus 163 ~~~C~~C~G~G~~~~-~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~I 241 (397)
T PRK14281 163 QVPCKECNGTGSKTG-ATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGGEGRVVKDRCPACYGEGIKQGEVTVKVTV 241 (397)
T ss_pred eecCCCCCCcccCCC-CCccCCCCCCCcEEEEEEecccceEEEEEecCCCcceeeeeCCCCCCCCCCccEecceEEEEec
Confidence 999999999999876 57799999999987543 3667778899999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCC
Q psy2902 792 PAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEG 871 (945)
Q Consensus 792 p~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~ 871 (945)
|+|+++|++|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|++++|+||||++.+.||++
T Consensus 242 p~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g 321 (397)
T PRK14281 242 PAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNGDDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAG 321 (397)
T ss_pred CCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEecCCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCc
Confidence 99999999999999999987767899999999999999999999999999999999999999999999999988999999
Q ss_pred CCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhc-CCCCCCCcchhHHHHhhhcC
Q psy2902 872 TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILE-GGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 872 ~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 945 (945)
+++|+++||+|+|||..+.+.+|||||+|+|.||+.||++|+++|++|++.... +.....++.+++|+++|+||
T Consensus 322 ~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 396 (397)
T PRK14281 322 TQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKELLKELKKSSHISPNAHNDKEEKSFFEKAKDIF 396 (397)
T ss_pred cCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHHHHHHHhhcccccccccCcccccHHHHHHHhh
Confidence 999999999999999766567899999999999999999999999999875211 00001345568999999986
|
|
| >PRK14289 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=475.40 Aligned_cols=355 Identities=37% Similarity=0.660 Sum_probs=296.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++...++|+.. .. ..+.++|.++++||++|+|+++|++||.+|+.+++.+.++++
T Consensus 15 ~~a~~~eik~ayr~la~~~HpD~~~---------~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~~~~~~~~ 83 (386)
T PRK14289 15 KTATVDEIKKAYRKKAIQYHPDKNP---------GD--KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVGGAAGGGG 83 (386)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC---------CC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccccCCCCCC
Confidence 3578899999999999999998742 11 123457888899999999999999999999887653211111
Q ss_pred cccccccccccc---cccccccCCCCC-----CCC-CCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcc
Q psy2902 655 ASAEASNFADAF---GDIFGDIFGSNR-----DRD-NNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGN 725 (945)
Q Consensus 655 ~~~~~~~f~d~f---~~~F~~~~g~~~-----~~~-~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~ 725 (945)
+++.+.+++|+| +++|+++|++.+ .+. ....+.++.++++.|.++|++++.|+++.+.+.+.+.|+.|+|+
T Consensus 84 ~~~~~~~~~~~f~~f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~ 163 (386)
T PRK14289 84 FSGEGMSMEDIFSMFGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGT 163 (386)
T ss_pred CCCCCcChhhhhHHhhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCC
Confidence 111112233443 333554432210 000 11223468899999999999999999999999999999999999
Q ss_pred ccccCcCcccCCCCCCCceEeEee----ceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEE
Q psy2902 726 GAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRI 801 (945)
Q Consensus 726 G~~~~~~~~~C~~C~G~G~~~~~~----~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i 801 (945)
|........+|+.|+|+|.+.+.. |+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+++|++|
T Consensus 164 G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i 243 (386)
T PRK14289 164 GAEGNNGSETCPTCKGSGSVTRVQNTILGTMQTQSTCPTCNGEGKIIKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQL 243 (386)
T ss_pred CCCCCCCCCcCCCCcCeEEEEEEEecccceEEEEEecCCCCccccccCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEE
Confidence 999888889999999999986544 7788899999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEEC
Q psy2902 802 RSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLR 881 (945)
Q Consensus 802 ~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~ 881 (945)
+|+|+|++.+.++.+|||||+|++++|+.|+|+++||++++.|+|.+|++|+++.|+|+||++.+.||+++++|+++||+
T Consensus 244 ~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~ 323 (386)
T PRK14289 244 SMNGKGNAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLR 323 (386)
T ss_pred EEeccccCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEEEC
Confidence 99999999776677899999999999999999999999999999999999999999999999889999999999999999
Q ss_pred CCCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCc---chhHHHHhhhcC
Q psy2902 882 GKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPR---TKTVLNKVKNFF 945 (945)
Q Consensus 882 g~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 945 (945)
|+|||..+++.+|||||+|+|.||+.||++|+++|++|++.. .++|+ ..++|.+++.||
T Consensus 324 g~G~p~~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~~l~~~~-----~~~~~~~~~~~~~~~~~~~~ 385 (386)
T PRK14289 324 NKGLPSVNGYGTGDLLVNVSVYIPETLSKEEKQTLEKMENSD-----NFKPTTSIKEKIFKKFKSFF 385 (386)
T ss_pred CCCcCCCCCCCCCcEEEEEEEEeCCCCCHHHHHHHHHHHhhc-----CCCCCcchhhhHHHHHHHhh
Confidence 999997665678999999999999999999999999999852 23455 247899999987
|
|
| >PRK14282 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-53 Score=467.92 Aligned_cols=339 Identities=35% Similarity=0.693 Sum_probs=283.0
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCC--
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSG-- 652 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g-- 652 (945)
...|++||.+..++++..+++|+... ++ ..+.++|.++++||++|+|+++|++||.+++.++.....+
T Consensus 14 ~~a~~~eik~ayr~la~~~HPD~~~~---------~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~~~~~~~~ 83 (369)
T PRK14282 14 RNATQEEIKRAYKRLVKEWHPDRHPE---------NR-KEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQPPYQETE 83 (369)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCcc---------ch-hHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccccccccCC
Confidence 35789999999999999999997421 10 1134588889999999999999999999998776532111
Q ss_pred CCccccc---cccccccc-ccccccCCCCCCC-CCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccc
Q psy2902 653 SSASAEA---SNFADAFG-DIFGDIFGSNRDR-DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGA 727 (945)
Q Consensus 653 ~~~~~~~---~~f~d~f~-~~F~~~~g~~~~~-~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~ 727 (945)
++++++. .+|+++|+ ++|+.|||+++.+ .....+.++.|+.+.++++|++++.|.++.+.+.+...|+.|+|+|.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~ 163 (369)
T PRK14282 84 SGGGFFEDIFKDFENIFNRDIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGV 163 (369)
T ss_pred CCCcccccccccccccccchhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCC
Confidence 1111111 12322221 3444444321110 11122356889999999999999999999999999999999999999
Q ss_pred ccCcCcccCCCCCCCceEeE----eeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEE
Q psy2902 728 KKGTSPISCFTCSGQGQVRM----QQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRS 803 (945)
Q Consensus 728 ~~~~~~~~C~~C~G~G~~~~----~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~ 803 (945)
.......+|+.|+|+|.+.. .+|+++.+.+|+.|+|.|+++.++|..|.|.|.+.+.++++|+||+|+.+|++|+|
T Consensus 164 ~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~ 243 (369)
T PRK14282 164 EPGSGYVTCPKCHGTGRIREERRSFFGVFVSERTCERCGGTGKIPGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRI 243 (369)
T ss_pred CCCCCCcCCCCCCCcCEEEEEEEccCcceEEEEECCCCCCcceeCCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEE
Confidence 98888889999999998743 34778888999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECC
Q psy2902 804 TGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRG 882 (945)
Q Consensus 804 ~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g 882 (945)
+|+|++.++++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|++++|+|+||+ +.|.||+++++|++++|+|
T Consensus 244 ~g~G~~~~~~~~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~G 323 (369)
T PRK14282 244 TGGGNAGYYGGPYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKG 323 (369)
T ss_pred ecccCCCCCCCCCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECC
Confidence 999999877778899999999999999999999999999999999999999999999996 6789999999999999999
Q ss_pred CCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 883 KGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 883 ~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
+|||..+.+.+|||||+|+|.+|+.|+.+++++|++|+...
T Consensus 324 kG~p~~~~~~~GDL~V~~~v~~P~~l~~~~~~ll~~l~~~~ 364 (369)
T PRK14282 324 KGLPNMRYGRRGDLIVNVHVEIPKRLSREERKLLKELAKKR 364 (369)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 99997655568999999999999999999999999998763
|
|
| >PTZ00037 DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=469.35 Aligned_cols=316 Identities=33% Similarity=0.539 Sum_probs=273.3
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..++++..+++|+.-. .++|.++++||++|+|++||++||.+|+.++..+. +
T Consensus 39 ~As~~eIKkAYrkla~k~HPDk~~~---------------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~~~~----~ 99 (421)
T PTZ00037 39 DCTTSEIKKAYRKLAIKHHPDKGGD---------------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLEGGE----Q 99 (421)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCch---------------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcccCC----C
Confidence 4689999999999999999997310 24788999999999999999999999988765221 1
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCccc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPIS 735 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~ 735 (945)
+.+|.|+|+.||+++ ++ ..+..++.|+.+.|+++|+++|.|+++.+.+.+...|+.|+|+|.... ...+
T Consensus 100 ---~~d~~d~f~~~Fggg---~~----~~~~~rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~-~~~~ 168 (421)
T PTZ00037 100 ---PADASDLFDLIFGGG---RK----PGGKKRGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKD-AFVD 168 (421)
T ss_pred ---CcchhhhHHHhhccc---cc----cccccCCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCC-CCcc
Confidence 124567777777532 11 112346889999999999999999999999999999999999998644 5779
Q ss_pred CCCCCCCceEeEe--ec--eeeeeecCCCCCCceEEee--cCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCC
Q psy2902 736 CFTCSGQGQVRMQ--QG--FFSIQQTCPKCQGAGKVIP--HPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809 (945)
Q Consensus 736 C~~C~G~G~~~~~--~~--~~~~~~~C~~C~G~g~~~~--~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~ 809 (945)
|+.|+|+|..... .| +++++.+|+.|+|.|++++ ++|..|.|.|.+.+.++++|+||+|+.+|++|+|+|+|++
T Consensus 169 C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~ 248 (421)
T PTZ00037 169 CKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQGKIIPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADE 248 (421)
T ss_pred CCCCCCCCeEEEEEeecceeeEEEEeCCCCCCcceeccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCC
Confidence 9999999975322 13 3467889999999999976 8999999999999999999999999999999999999998
Q ss_pred CCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCC--CCCCcEEEECCCCcC
Q psy2902 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEG--TQSGKIFRLRGKGIK 886 (945)
Q Consensus 810 ~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~--~~~g~~~~i~g~G~~ 886 (945)
.++ +.+|||||+|++++|+.|+|+|+||+++++|+|.|||+|+++.|+||||+ +.+.||++ ++||++++|+|+|||
T Consensus 249 ~~~-~~pGDLiv~I~~~ph~~F~R~G~DL~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP 327 (421)
T PTZ00037 249 KPN-EIPGNVVFILNEKPHDTFKREGGDLFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMP 327 (421)
T ss_pred CCC-CCCCcEEEEEEecCCCCcEEeCCeEEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcc
Confidence 664 67999999999999999999999999999999999999999999999997 57889987 999999999999999
Q ss_pred CCCC-CCCccEEEEEEEECC--CCCCHHHHHHHHHHHHh
Q psy2902 887 NIRS-SIPGDLFCHVTIETP--VQLTEYQKKLLRSLETS 922 (945)
Q Consensus 887 ~~~~-~~~Gdl~v~~~i~~p--~~l~~~~~~~~~~~~~~ 922 (945)
..+. +.+|||||+|+|.|| +.||++|+++|++|+..
T Consensus 328 ~~~~~~~rGDL~V~~~V~~P~~~~Ls~~qk~ll~~l~~~ 366 (421)
T PTZ00037 328 TYKSPFKKGNLYVTFEVIFPVDRKFTNEEKEILKSLFPQ 366 (421)
T ss_pred cCCCCCCCCCEEEEEEEEcCCCCCCCHHHHHHHHHhccC
Confidence 7554 468999999999999 99999999999999864
|
|
| >PRK14293 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-52 Score=461.76 Aligned_cols=350 Identities=33% Similarity=0.640 Sum_probs=292.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..+++....++|+.. . ..+.++|..+++||++|+++++|++||.+++.|++++. +.++
T Consensus 14 ~a~~~eik~ayr~la~~~HPD~~~---------~---~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~~~~-~~~~ 80 (374)
T PRK14293 14 DADKDELKRAYRRLARKYHPDVNK---------E---PGAEDRFKEINRAYEVLSDPETRARYDQFGEAGVSGAA-GFPD 80 (374)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC---------C---cCHHHHHHHHHHHHHHHhchHHHHHHhhccccccccCC-CcCC
Confidence 578899999999999988988631 1 12345778889999999999999999999988765321 1111
Q ss_pred ccccccccccccccccccCCCCCCC--CCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDR--DNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSP 733 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~--~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~ 733 (945)
.....+|.|+|++||+++.+.+... ....++.++.++++.|.++|++++.|.++.+.+++...|+.|+|+|.......
T Consensus 81 ~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~ 160 (374)
T PRK14293 81 MGDMGGFADIFETFFSGFGGAGGQGGRRRRRGPQRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGP 160 (374)
T ss_pred cccccchHHHHHHHhcccCCCCCCCccccccCccCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCC
Confidence 0111245677877886531111000 01122346789999999999999999999999999999999999999888888
Q ss_pred ccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCC
Q psy2902 734 ISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809 (945)
Q Consensus 734 ~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~ 809 (945)
.+|+.|+|+|.+.+. +|+++...+|+.|.|.|+++.++|..|.|.|.+.+.++++|+||||+++|++|+|+|+|++
T Consensus 161 ~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~ 240 (374)
T PRK14293 161 TTCSTCGGAGQVRRATRTPFGSFTQVSECPTCNGTGQVIEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDA 240 (374)
T ss_pred eeCCCCCCcceEEEEEecCcceEEEEeeCCCCCcceeEeccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccC
Confidence 899999999987543 3778888999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCC
Q psy2902 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIR 889 (945)
Q Consensus 810 ~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~ 889 (945)
...++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|+||++.+.||+++++|+++||+|+|||..+
T Consensus 241 ~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~ 320 (374)
T PRK14293 241 GLRGGPPGDLYVYLFVKNDPEFRRDGINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLG 320 (374)
T ss_pred CCCCCCCcCEEEEEEEeCCCccChhhhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCC
Confidence 76666789999999999999999999999999999999999999999999999888899999999999999999999755
Q ss_pred C-CCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCC-cchhHHHHh
Q psy2902 890 S-SIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNP-RTKTVLNKV 941 (945)
Q Consensus 890 ~-~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 941 (945)
. +.+|||||+|+|.||+.|+++|+++|++|+....+ -.+| +..+||+.+
T Consensus 321 ~~~~~GDL~v~~~v~~P~~l~~~~~~l~~~l~~~~~~---~~~~~~~~~~~~~~ 371 (374)
T PRK14293 321 NPVARGDHLITVKVKIPTRISDEERELLEKLAKIKGE---RQGKGGIEGFFGGL 371 (374)
T ss_pred CCCCcCCEEEEEEEECCCCCCHHHHHHHHHHHhhccc---cCCccchhhHHHHh
Confidence 4 46899999999999999999999999999976432 2344 466787765
|
|
| >PRK14291 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=461.41 Aligned_cols=336 Identities=39% Similarity=0.712 Sum_probs=285.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..++++...++|+.. . ..+.++|.++++||++|+|+++|++||.+++.++..+.++..
T Consensus 13 ~~a~~~~ik~ayr~la~~~HPD~~~---------~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~~~~~~~~ 80 (382)
T PRK14291 13 RNATQEEIKKAYRRLARKYHPDFNK---------N---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFSGSGQQQQ 80 (382)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCC---------C---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccccccCccc
Confidence 3468899999999999989998732 1 123457888999999999999999999999887653211110
Q ss_pred --cc---ccccccccccccccc-----ccCCCCCC-CC---CCCCCCCCccceeeccccccccccceeeEeeccccccCC
Q psy2902 655 --AS---AEASNFADAFGDIFG-----DIFGSNRD-RD---NNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICK 720 (945)
Q Consensus 655 --~~---~~~~~f~d~f~~~F~-----~~~g~~~~-~~---~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~ 720 (945)
++ ..+.+|+|+|.+||+ ++|++... +. ....+.++.|+.+.|+++|++++.|.++.+.+.+...|+
T Consensus 81 ~~~~~~~~~~~~~~d~f~~~f~~fg~~~~fg~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~ 160 (382)
T PRK14291 81 GQEGFSDFGGGNIEDILEDVFDIFGFGDIFGRRRATRERRKTYQRPVKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCE 160 (382)
T ss_pred cccccccccCCCHHHHHHHHHHhccccccccccccccccccccccccCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCC
Confidence 01 112345566666642 22332100 00 012234688999999999999999999999999999999
Q ss_pred CCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeE
Q psy2902 721 SCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMR 800 (945)
Q Consensus 721 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~ 800 (945)
.|+|+|........+|+.|+|+|.+....|+++.+.+|+.|+|.|. +.++|..|.|.|.+.+.++++|+||||+.+|++
T Consensus 161 ~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~-~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~ 239 (382)
T PRK14291 161 ACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV-LREPCSKCNGRGLVIKKETIKVRIPPGVDNGSK 239 (382)
T ss_pred CCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE-EccCCCCCCCCceEEeeeEEEEEeCCCCCCCCE
Confidence 9999999988888999999999999888888899999999999995 688999999999999999999999999999999
Q ss_pred EEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCCCCCCcEEE
Q psy2902 801 IRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEGTQSGKIFR 879 (945)
Q Consensus 801 i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~ 879 (945)
|+|+|+|++.++++.+|||||+|++++|+.|+|+|+||++++.|+|.||++|+++.|+|+||+ +.|.||+++++|++++
T Consensus 240 i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~ 319 (382)
T PRK14291 240 LRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNLYLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIR 319 (382)
T ss_pred EEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCeEEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEE
Confidence 999999999877778999999999999999999999999999999999999999999999996 6789999999999999
Q ss_pred ECCCCcCCCCCCCCccEEEEEEEECCC--CCC------HHHHHHHHHHHHhh
Q psy2902 880 LRGKGIKNIRSSIPGDLFCHVTIETPV--QLT------EYQKKLLRSLETSI 923 (945)
Q Consensus 880 i~g~G~~~~~~~~~Gdl~v~~~i~~p~--~l~------~~~~~~~~~~~~~~ 923 (945)
|+|+|||..+...+|||||+|+|.||+ .|| ++|+++|++|...+
T Consensus 320 i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls~~~~~~~~~~~~~~~l~~~~ 371 (382)
T PRK14291 320 VPGKGMPRLKGSGYGDLVVRVHIDVPKISMLSKLMGDGKKAKKLLKELDKLL 371 (382)
T ss_pred ECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcCccccCCHHHHHHHHHHHhhc
Confidence 999999986655789999999999997 599 99999999998775
|
|
| >TIGR02349 DnaJ_bact chaperone protein DnaJ | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-52 Score=459.60 Aligned_cols=333 Identities=49% Similarity=0.871 Sum_probs=283.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..++++...++|+... ..+.++|..+++||++|+|+.+|++||.+++.+++.+.+++++
T Consensus 11 ~a~~~~ik~ayr~la~~~HPD~~~~------------~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~~~~~~~~~ 78 (354)
T TIGR02349 11 DASEEEIKKAYRKLAKKYHPDRNKD------------KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFNGGGGGGGG 78 (354)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC------------ccHHHHHHHHHHHHHHhhChHHHHhhhhcccccccccCcCCCC
Confidence 4688999999999999888887420 1123577788999999999999999999998877542221111
Q ss_pred cc------ccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccccc
Q psy2902 656 SA------EASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729 (945)
Q Consensus 656 ~~------~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~ 729 (945)
++ ...+|.|+|+.||++.++++. .....+.++.|++++|+++|+++|.|.++.+.+.+...|+.|+|+|...
T Consensus 79 ~~~~~~~~~~~~~~~~f~~~fg~~~g~~~--~~~~~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~ 156 (354)
T TIGR02349 79 GFNGFDIGFFGDFGDIFGDFFGGGGGSGR--RRRSGPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKP 156 (354)
T ss_pred CcCCccccCcCchhhhHHHHhccCcccCc--cccCCCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCC
Confidence 10 112345666666654322111 1112345688999999999999999999999999999999999999988
Q ss_pred CcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcC
Q psy2902 730 GTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 730 ~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g 805 (945)
.....+|+.|+|+|.+... +|+++.+.+|+.|.|+|+++.++|..|.|.|.+.+.++++|+||+|+++|++|+|+|
T Consensus 157 ~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g 236 (354)
T TIGR02349 157 GTDPKTCPTCGGTGQVRRQQGTPFGFFQQQQTCPTCGGEGKIIKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSG 236 (354)
T ss_pred CCCCccCCCCCCeeEEEEEEeccCCceEEEEecCCCCCcceecCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEec
Confidence 8888999999999987543 457778889999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCc
Q psy2902 806 NGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGI 885 (945)
Q Consensus 806 ~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~ 885 (945)
+|++..++..+|||||+|++++|+.|+|+|+||++++.|+|.|||+|+++.|+||||.+.+.||+++++|++++|+|+||
T Consensus 237 ~G~~~~~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~ 316 (354)
T TIGR02349 237 KGNAGENGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGV 316 (354)
T ss_pred CccCCCCCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECCCCc
Confidence 99997766778999999999999999999999999999999999999999999999988899999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHh
Q psy2902 886 KNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETS 922 (945)
Q Consensus 886 ~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~ 922 (945)
|..+++.+|||||+|+|.||+.|+++|+++|+++++.
T Consensus 317 p~~~~~~~GDL~i~~~v~~P~~l~~~~~~~l~~~~~~ 353 (354)
T TIGR02349 317 PRLRGNGRGDLLVTVKVETPKNLSKEQKELLEELAEA 353 (354)
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 9766557899999999999999999999999999753
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. |
| >PRK14292 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=458.90 Aligned_cols=351 Identities=34% Similarity=0.613 Sum_probs=289.7
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.+||.+..+++.+..++|+... ..+.+++..+++||++|+|+++|++||.+|+.+..+..++++.
T Consensus 13 ~a~~~~ik~ayr~l~~~~hpD~~~~------------~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~~~~~~~~~~~ 80 (371)
T PRK14292 13 TASADEIKSAYRKLALKYHPDRNKE------------KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAPGAGMPGGDPF 80 (371)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCC------------hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcccccccCCccc
Confidence 4688999999999999889887421 1233567888999999999999999999998763211111110
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCc-Ccc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT-SPI 734 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~-~~~ 734 (945)
++++.++.|+|+.||++...++. . ..+++.++.++++.+.++|++++.|+++.+.+.+...|+.|+|+|..... ...
T Consensus 81 ~~~~~d~~d~f~~~fg~~~~~~~-~-~~~~~~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~ 158 (371)
T PRK14292 81 GGMGFDPMDIFEQLFGGAGFGGG-R-GRRGPARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPK 158 (371)
T ss_pred CccCCChHHHHHHhhCCCCcCCC-C-CcccccCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCc
Confidence 11112344677777764310111 0 11223568899999999999999999999999999999999999987664 478
Q ss_pred cCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPG 810 (945)
Q Consensus 735 ~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~ 810 (945)
+|+.|+|+|.+.+. .|+++.+.+|+.|+|.|+.+.++|..|.|.|.+.+.++++|.||+|+++|++|+|+|+|++.
T Consensus 159 ~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~ 238 (371)
T PRK14292 159 TCPTCRGAGAVRAQARTIFGVVETQQPCPTCRGEGQIITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEG 238 (371)
T ss_pred cCCCCCCccEEEEEEeccCceEEEeeecCCCcccceecCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCC
Confidence 99999999987543 37777889999999999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCC
Q psy2902 811 LNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRS 890 (945)
Q Consensus 811 ~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~ 890 (945)
+++ . |||||+|++++|+.|+|+|+||++++.|+|.+|++|+++.|+||+|+..+.||+++++|++++|+|+|||..++
T Consensus 239 ~~~-~-GDL~v~i~v~~h~~f~r~g~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~ 316 (371)
T PRK14292 239 PGG-N-GDLYVHIEMEPHPELRREQEHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQG 316 (371)
T ss_pred CCC-C-CCEEEEEEEecCCccccchhceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCC
Confidence 654 3 99999999999999999999999999999999999999999999999889999999999999999999998666
Q ss_pred CCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 891 SIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 891 ~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
..+|||||+|+|.+|+.|+++|+++|++|+..... ..++++ ..+|.++++||
T Consensus 317 ~~~GDL~V~~~v~~P~~l~~~q~~ll~~~~~~~~~--~~~~~~-~~~~~~~~~~~ 368 (371)
T PRK14292 317 AGTGDLIVEYEIAVPKQLSPEAREALEAYARAVGD--EVPEPH-EGLFDKVGKLF 368 (371)
T ss_pred CCCCCEEEEEEEECCCCCCHHHHHHHHHHHhhccc--ccCccc-ccHHHHHHHHh
Confidence 66899999999999999999999999999865311 112344 38889999887
|
|
| >PRK14283 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-51 Score=456.59 Aligned_cols=352 Identities=39% Similarity=0.684 Sum_probs=287.8
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCC-
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGS- 653 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~- 653 (945)
...|.+||.+..++++..+++|+. .. -.+.++|.++++||++|+|+++|++||++|+.|++....++
T Consensus 15 ~~a~~~eik~ayr~la~~~HPD~~---------~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~~~~~~~~ 82 (378)
T PRK14283 15 RNADKKEIKKAYRKLARKYHPDVS---------EE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMDGFSQEDI 82 (378)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC---------CC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhccccccccccccc
Confidence 356889999999999999999963 21 13456888999999999999999999999988765211100
Q ss_pred -Cccccc---cccccccccccccc-CCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccc
Q psy2902 654 -SASAEA---SNFADAFGDIFGDI-FGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAK 728 (945)
Q Consensus 654 -~~~~~~---~~f~d~f~~~F~~~-~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~ 728 (945)
...... ..|...|+++|+.+ |++++ ..++.++.+++++|+++|++++.|+++.+.+.+...|+.|+|+|..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~f~~~~fgg~~----~~~~~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~ 158 (378)
T PRK14283 83 FNNINFEDIFQGFGFGIGNIFDMFGFGGGS----RHGPQRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAE 158 (378)
T ss_pred ccccCccccccccccchhhhccccccCCCC----CCCccCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccC
Confidence 000000 01110122333333 33211 1223467899999999999999999999999999999999999998
Q ss_pred cCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEc
Q psy2902 729 KGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRST 804 (945)
Q Consensus 729 ~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~ 804 (945)
......+|+.|+|+|.+... .|+++...+|+.|.|.|+.+.++|..|.|.|.+.+.++++|.||+|+++|++++|+
T Consensus 159 ~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~ 238 (378)
T PRK14283 159 PGSEVKTCPTCGGTGQVKQVRNTILGQMMNVTTCPDCQGEGKIVEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVS 238 (378)
T ss_pred CCCCCccCCCcCCccEEEEEEeccCceEEEEEECCCCCccceecCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEe
Confidence 88888899999999987543 36777788999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCC
Q psy2902 805 GNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKG 884 (945)
Q Consensus 805 g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G 884 (945)
|+|++.+.++.+|||||+|++++|+.|+|+|+||+++++|+|.+|++|++++|+||||.+.+.||+++++|+++||+|+|
T Consensus 239 g~G~~~~~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G 318 (378)
T PRK14283 239 GEGEMGDRGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHG 318 (378)
T ss_pred ccccCCCCCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCC
Confidence 99999876678999999999999999999999999999999999999999999999998788999999999999999999
Q ss_pred cCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHhhhcC
Q psy2902 885 IKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNFF 945 (945)
Q Consensus 885 ~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 945 (945)
||....+.+|||||+|+|.||+.||++|+++|+++++.... ..+.+..+++..++.||
T Consensus 319 ~p~~~~~~~GdL~v~~~v~~P~~l~~~q~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~ 376 (378)
T PRK14283 319 MPSLRWSGKGNLYVKVKVVVPKKLSPKQKELLREFASISGD---EIHHVKKGLFDKVKDAI 376 (378)
T ss_pred CCCCCCCCCCCEEEEEEEEeCCCCCHHHHHHHHHHHhhccc---ccCcccccHHHHHHHHh
Confidence 99765567899999999999999999999999999864211 11222336777666553
|
|
| >PRK14290 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-51 Score=451.68 Aligned_cols=336 Identities=36% Similarity=0.633 Sum_probs=280.4
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSS 654 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~ 654 (945)
...|.+||.+..+++....++|+. +.+. ..+.++|.++++||++|+|+++|++||.+|+.++++++++.+
T Consensus 13 ~~a~~~eik~ayr~la~~~HPD~~---------~~~~-~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~~~~~~~~ 82 (365)
T PRK14290 13 RNASQEDIKKAFRELAKKWHPDLH---------PGNK-AEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFGAGGSNFN 82 (365)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC---------CCch-hHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccccCCCCcc
Confidence 357899999999999998999862 2211 123457888999999999999999999999987753211111
Q ss_pred -ccc-ccccccccccccccccCCCC---CCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccccc
Q psy2902 655 -ASA-EASNFADAFGDIFGDIFGSN---RDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729 (945)
Q Consensus 655 -~~~-~~~~f~d~f~~~F~~~~g~~---~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~ 729 (945)
+++ ...+|.|+|+.||++++++. +.....+....+.|+++.|+++|++++.|+++.+.+.+...|+.|+|+|...
T Consensus 83 ~~~~~~~~~~~d~f~~~fg~~~~~~~~~~~~~~~~~~~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~ 162 (365)
T PRK14290 83 WDNFTHFSDINDIFNQIFGGNFGSDFFSGFGNQQSTRNIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKN 162 (365)
T ss_pred ccccccccchhHHHHHHhcCccccccccccccccCCCCCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCC
Confidence 010 11356677877777532210 0000111112378999999999999999999999999999999999999877
Q ss_pred CcCcccCCCCCCCceEeEee--cee--eeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcC
Q psy2902 730 GTSPISCFTCSGQGQVRMQQ--GFF--SIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 730 ~~~~~~C~~C~G~G~~~~~~--~~~--~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g 805 (945)
. ...+|+.|+|+|.+.+.. |++ +.+.+|+.|.|.|+++..+|..|+|.|.+.+.++++|+||+|+.+|++|+|+|
T Consensus 163 ~-~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g 241 (365)
T PRK14290 163 G-KLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGGRGRIPEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKG 241 (365)
T ss_pred C-CCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCCceeEccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEcc
Confidence 5 577999999999875543 554 34689999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCc
Q psy2902 806 NGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGI 885 (945)
Q Consensus 806 ~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~ 885 (945)
+|+. .++.+|||||+|++++|+.|+|+|+||+++++|+|.||++|+++.|+|++|.+.+.||+++++|+++||+|+||
T Consensus 242 ~G~~--~~~~~GDL~v~v~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~G~ 319 (365)
T PRK14290 242 KGQS--YGGRTGDLYVVLRVNNDPNIQRINDDLYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGAGM 319 (365)
T ss_pred ccCC--CCCCCCCEEEEEEEcCCCCEEEecCCEEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEECCCCC
Confidence 9986 35679999999999999999999999999999999999999999999999998999999999999999999999
Q ss_pred CCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhh
Q psy2902 886 KNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSI 923 (945)
Q Consensus 886 ~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~ 923 (945)
|..+.+.+|||||+|+|.+|+.|+++|+++|++++...
T Consensus 320 p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~~~~~~~ 357 (365)
T PRK14290 320 PHLNGHGSGDLLVRINVEVPKRLTSKQKELIREFFDIK 357 (365)
T ss_pred CCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 97665568999999999999999999999999998763
|
|
| >PRK11678 putative chaperone; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=445.73 Aligned_cols=341 Identities=26% Similarity=0.394 Sum_probs=287.5
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEe----------------------------------------
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQ---------------------------------------- 112 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~---------------------------------------- 112 (945)
++|||||||||++|+++++.++++++..|...+||+|+|.
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 6999999999999999999999999999999999999995
Q ss_pred eCCcEEecHHHHHhhhhCCCch--hHHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHH
Q psy2902 113 ENGEILVGAPAKRQAVTNPKNT--IYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLR 190 (945)
Q Consensus 113 ~~~~~~~G~~A~~~~~~~~~~~--i~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~ 190 (945)
+++..++|..|..++..+|..+ +.++|++||...-.+ +....++++++++|+
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~--------------------------~~~~~~e~l~a~iL~ 135 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP--------------------------QQVALFEDLVCAMML 135 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc--------------------------cceeCHHHHHHHHHH
Confidence 3457789999999999999888 779999998642110 122348999999999
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCCCC-----HHHHHH---HHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEE
Q psy2902 191 KMKKTAEDYLGGEITEAVITVPAYFN-----DAQRQA---TKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVV 262 (945)
Q Consensus 191 ~l~~~a~~~~~~~~~~~VitVPa~~~-----~~qr~~---l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlV 262 (945)
+|++.++.+++.++.++|||||++|+ +.||++ |++||+.|||+++.+++||+|||++|+... ..+..+||
T Consensus 136 ~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~--~~~~~vlV 213 (450)
T PRK11678 136 HIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL--TEEKRVLV 213 (450)
T ss_pred HHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc--CCCCeEEE
Confidence 99999999999999999999999998 777765 799999999999999999999999998654 46788999
Q ss_pred EEeCCcceEEEEEEEEeec---CCceEEEEEecCCCCCchHHHHHHHH-HHHHHHHHHH----hCCCC------------
Q psy2902 263 YDLGGGTFDVSIIEIADVD---GEKQFEVLSTNGDTFLGGEDFDQRII-DYILDEFNKI----NGIDL------------ 322 (945)
Q Consensus 263 vD~GggT~dvsv~~~~~~~---~~~~~~vl~~~~~~~lGG~~iD~~l~-~~l~~~~~~~----~~~~~------------ 322 (945)
+|+||||+|+|++++.... .....+++++.| ..+||++||..|+ +++...|... .+.++
T Consensus 214 ~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~fg~~~~~~~g~~~p~~~~~~~~~~~ 292 (450)
T PRK11678 214 VDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIN 292 (450)
T ss_pred EEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHhhhchhhccCCcCcchhhhhhhhhh
Confidence 9999999999999984321 123467899887 6899999999997 6777776421 11100
Q ss_pred -----------------------ccCHHHH------------HHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEE
Q psy2902 323 -----------------------RKDSIAL------------QRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN 367 (945)
Q Consensus 323 -----------------------~~~~~~~------------~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~ 367 (945)
..++..+ .+|+.+||++|+.||....+.+.++.+.. ++.
T Consensus 293 ~i~~~~~~~~~~~~~~~~~~~~~~~~p~~~~rl~~l~~~~~~~~L~~~aE~aK~~LS~~~~a~i~~~~~~~------~~~ 366 (450)
T PRK11678 293 DVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAETRASLDFISD------GLA 366 (450)
T ss_pred ccchhhhhhhhhhHHHHHHHhhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHcCCCCceEEEecccCC------Ccc
Confidence 0122222 36889999999999999999988876532 467
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHH
Q psy2902 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 368 ~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~ 447 (945)
..|||++|+++++++++++.++++++|+++++. ++.|+||||+|++|.|++.+++.||.......+|.++||.|+|+
T Consensus 367 ~~ItR~efe~ii~~~l~ri~~~i~~~L~~a~~~---~d~VvLvGGsSriP~V~~~l~~~fg~~~v~~g~~~~sVa~Gla~ 443 (450)
T PRK11678 367 TEISQQGLEEAISQPLARILELVQLALDQAQVK---PDVIYLTGGSARSPLIRAALAQQLPGIPIVGGDDFGSVTAGLAR 443 (450)
T ss_pred eeeCHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---CCEEEEcCcccchHHHHHHHHHHCCCCcEEeCCCcchHHHHHHH
Confidence 999999999999999999999999999999876 47999999999999999999999987666678999999999999
Q ss_pred hhhh
Q psy2902 448 QGSV 451 (945)
Q Consensus 448 ~a~~ 451 (945)
+|..
T Consensus 444 ~a~~ 447 (450)
T PRK11678 444 WAQV 447 (450)
T ss_pred HHHh
Confidence 9964
|
|
| >KOG0712|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=384.53 Aligned_cols=313 Identities=34% Similarity=0.576 Sum_probs=265.9
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
.-|++||++..++++...+.|+ ..++.++|++|++||++|||+|||++||++|+.|++.+++|+++
T Consensus 15 ~As~~eikkayrkla~k~HpDk--------------n~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g~~~~g~ 80 (337)
T KOG0712|consen 15 DASEEEIKKAYRKLALKYHPDK--------------NPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGGGGGGGF 80 (337)
T ss_pred CcCHHHHHHHHHHHHHHhCCCC--------------CccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhcccCCCCCC
Confidence 4678888888877777666665 33467899999999999999999999999999998654433221
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCccc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPIS 735 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~ 735 (945)
+ . |++||+ ||+.+++ +..++.++.+.++++|+++|.|.+....++++.+|+.|.|+|....... +
T Consensus 81 --~--~----f~~~F~--~g~~~~~----~~~rg~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~-~ 145 (337)
T KOG0712|consen 81 --G--G----FSQFFG--FGGNGGR----GRQRGKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAP-K 145 (337)
T ss_pred --c--c----HHHhcc--CCCcCcc----ccccCCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCC-C
Confidence 1 1 555555 2332222 2223899999999999999999999999999999999999999988755 7
Q ss_pred CCCCCCCceE----eEeecee-eeeecCCCCCCceEE--eecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCC
Q psy2902 736 CFTCSGQGQV----RMQQGFF-SIQQTCPKCQGAGKV--IPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGE 808 (945)
Q Consensus 736 C~~C~G~G~~----~~~~~~~-~~~~~C~~C~G~g~~--~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~ 808 (945)
|+.|.|+|.. .+.+|+. +++..|..|+|.|.. ..+.|..|.|.+.+...+.++|+|++|+.+++++.+.|+++
T Consensus 146 C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~G~~~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~gead 225 (337)
T KOG0712|consen 146 CTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGSGETISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEAD 225 (337)
T ss_pred CCCCCCCCceeEEEeccccccccceeEeccCCCccccccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeee
Confidence 9999999975 3445443 578899999999997 56889999999999999999999999999999999999998
Q ss_pred CCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEE-EEeCCC--CCCCcEEEECCCCc
Q psy2902 809 PGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAF-FVIPEG--TQSGKIFRLRGKGI 885 (945)
Q Consensus 809 ~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~-~~i~~~--~~~g~~~~i~g~G~ 885 (945)
..+. ..+||+++.+..+.|+.|.|+++||++..+|+|.||++|+.+.+.||||+.+ +.++++ ++||.+++|+|+||
T Consensus 226 ea~g-~~pgD~vl~i~~k~h~~F~Rrg~dL~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gm 304 (337)
T KOG0712|consen 226 EAPG-TKPGDVVLLIDQKEHPGFDRRGSDLYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGM 304 (337)
T ss_pred ecCC-CcCccEEEEecccccccceecccccceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCc
Confidence 8655 4599999999999999999999999999999999999999999999999765 456665 89999999999999
Q ss_pred CCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHH
Q psy2902 886 KNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLE 920 (945)
Q Consensus 886 ~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~ 920 (945)
|..+.. .|||||+|+|+||+ +++++...|++++
T Consensus 305 p~~~~~-~g~lyi~~~v~fp~-~~~~~~~~l~~~l 337 (337)
T KOG0712|consen 305 PIFRNP-KGDLYIKFEVKFPK-LSPSQLKMLEDLL 337 (337)
T ss_pred ccccCC-CCcEEEEEEEEcCC-CChHHHHHHHhhC
Confidence 997766 99999999999999 9999999998764
|
|
| >PRK14299 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=330.12 Aligned_cols=259 Identities=33% Similarity=0.557 Sum_probs=208.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCC---
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSG--- 652 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g--- 652 (945)
..|.+||.+..++++...++|+... ..+.++|.++++||++|+++++|++||.+++.+...+..+
T Consensus 15 ~a~~~eik~ayr~la~~~HPD~~~~------------~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~~~~~~~~~~ 82 (291)
T PRK14299 15 NASQDEIKKAFKKLARKYHPDVNKS------------PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAASAGWQGPPP 82 (291)
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC------------hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccccccccCCCC
Confidence 4689999999999999999997321 1234578889999999999999999999998754321111
Q ss_pred -C-C-cccc---ccccccccccccccc--CCCCCC--CCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCC
Q psy2902 653 -S-S-ASAE---ASNFADAFGDIFGDI--FGSNRD--RDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSC 722 (945)
Q Consensus 653 -~-~-~~~~---~~~f~d~f~~~F~~~--~g~~~~--~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C 722 (945)
+ + +++. ..+|+|+|+.|||++ +++.+. ......+..+.|+++++.++|+++++|+++.+.+.
T Consensus 83 ~~~~~~~~~~~~~~~~~d~f~~~fgg~~~~~~~g~~~~~~~~~~~~g~dl~~~l~isL~ea~~G~~~~i~l~-------- 154 (291)
T PRK14299 83 GPPGGGDFSGFNVGDFSDFFQQLFGGRGGFGGFGDLFGSVGRRARKGRDLEAELPLTLEEAYRGGEKVVEVA-------- 154 (291)
T ss_pred CCCCCCCccccCcCCHHHHHHHHhCCCCCCCCcccccccccCCCCCCCCEEEEEEecHHHHhCCCeEEEeeC--------
Confidence 0 0 1111 124556666666532 111000 00012235678999999999999999998877531
Q ss_pred CccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEE
Q psy2902 723 YGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIR 802 (945)
Q Consensus 723 ~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~ 802 (945)
.++++|+||+|+++|++++
T Consensus 155 -------------------------------------------------------------g~~~~V~Ip~G~~~G~~ir 173 (291)
T PRK14299 155 -------------------------------------------------------------GERLSVRIPPGVREGQVIR 173 (291)
T ss_pred -------------------------------------------------------------CEEEEEecCCCcCCCcEEE
Confidence 1368999999999999999
Q ss_pred EcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECC
Q psy2902 803 STGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRG 882 (945)
Q Consensus 803 ~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g 882 (945)
++|+|++. |||||+|++++|+.|+|+|+||+++++|++.+|++|++++|+|+||.+.+.||+++++|+++||+|
T Consensus 174 ~~g~G~~~------GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl~g 247 (291)
T PRK14299 174 LAGKGRQG------GDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKG 247 (291)
T ss_pred ECCCCCCC------CCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEECC
Confidence 99999973 999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CCcCCCCCCCCccEEEEEEEECCCCCCHHHHHHHHHHHHh
Q psy2902 883 KGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETS 922 (945)
Q Consensus 883 ~G~~~~~~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~ 922 (945)
+|||.. .+.+|||||+|+|.+|+.|+++|+++|++|++.
T Consensus 248 ~G~p~~-~~~~GDL~v~~~V~~P~~l~~~~~~~l~~l~~~ 286 (291)
T PRK14299 248 KGWPRG-PAGRGDQYAEVRITIPTRPTPEEERLYKQLAEL 286 (291)
T ss_pred CCCCCC-CCCCCCEEEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 999963 456899999999999999999999999999865
|
|
| >PRK10266 curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=330.49 Aligned_cols=283 Identities=31% Similarity=0.509 Sum_probs=220.6
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc----cCCCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA----GIDPNM 650 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~----g~~~~~ 650 (945)
...|.+||.+..+++....++|+. .. ..+...|.++++||++|+++++|+.||.++.. ++....
T Consensus 14 ~~a~~~eik~ayr~la~k~HPD~~---------~~---~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~~~~~~~~~~~ 81 (306)
T PRK10266 14 PTDDLKTIKTAYRRLARKYHPDVS---------KE---PDAEARFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQF 81 (306)
T ss_pred CCCCHHHHHHHHHHHHHHHCcCCC---------CC---ccHHHHHHHHHHHHHHhhhHHHHHHHHHhhccccCccccccc
Confidence 357889999999999999999962 11 12345788999999999999999999998754 222111
Q ss_pred CCCCc-ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccccc
Q psy2902 651 SGSSA-SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKK 729 (945)
Q Consensus 651 ~g~~~-~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~ 729 (945)
+.+++ .....+|.++|+.||+++ ++. ..+....++.|+.+++.++|+++++|+.+.+.+.+. .
T Consensus 82 ~~~~~~~~~~~~~~~~f~~~~g~~-~~~---~~~~~~~kg~di~~~v~isLee~~~G~~k~i~~~~~----~-------- 145 (306)
T PRK10266 82 QHGDGQSFNAEDFDDIFSSIFGQH-ARQ---SRQRPAARGHDIEIEVAVFLEETLTEHKRTISYNLP----V-------- 145 (306)
T ss_pred ccCCCCCCCCCCHHHHHHHHhCCC-CCC---CCCCCCCCCCceEEEEEEEHHHhcCCceEEEEEecc----c--------
Confidence 10111 111234566666666542 111 111223467899999999999999999888876532 1
Q ss_pred CcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCC
Q psy2902 730 GTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEP 809 (945)
Q Consensus 730 ~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~ 809 (945)
|.|.|... ....++++|+||+|+++|++++++|+|++
T Consensus 146 ---------~~g~G~~~----------------------------------~~~~~~~~V~Ip~G~~~G~~i~~~g~G~~ 182 (306)
T PRK10266 146 ---------YNAFGMIE----------------------------------QEIPKTLNVKIPAGVGNGQRIRLKGQGTP 182 (306)
T ss_pred ---------ccCCCeEE----------------------------------EeeeEEEEEEECCCCcCCcEEEEecCCcC
Confidence 22222210 01124789999999999999999999999
Q ss_pred CCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCC
Q psy2902 810 GLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIR 889 (945)
Q Consensus 810 ~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~ 889 (945)
..+++.+|||||+|++++|+.|+|+|+||+++++|++.+|++|++++|+|++|++.+.||+++++|+++||+|+|||..+
T Consensus 183 ~~~~~~~GDl~v~i~v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G~p~~~ 262 (306)
T PRK10266 183 GENGGPNGDLWLVIHIAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK 262 (306)
T ss_pred CCCCCCCccEEEEEEEcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCCCCCCC
Confidence 87777789999999999999999999999999999999999999999999999988999999999999999999999743
Q ss_pred CCCCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcc
Q psy2902 890 SSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT 934 (945)
Q Consensus 890 ~~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (945)
.+|||||+|+|.+|+.||++|+++|++|+.... .+||+.
T Consensus 263 --~~GdL~v~~~v~~P~~l~~~q~~l~~~l~~~~~----~~~~~~ 301 (306)
T PRK10266 263 --QTGDLYAVLKIVMPPKPDEKTAALWQQLADAQS----SFDPRK 301 (306)
T ss_pred --CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc----ccCcch
Confidence 589999999999999999999999999987642 256654
|
|
| >PRK13928 rod shape-determining protein Mbl; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=326.86 Aligned_cols=310 Identities=24% Similarity=0.349 Sum_probs=239.1
Q ss_pred EEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC-c-EEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG-E-ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 74 iGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~-~-~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
+||||||++|+++.. +...++. .||+++++.++ . ..+|.+|.......|.+...
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~--------------- 61 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVA--------------- 61 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEE---------------
Confidence 899999999999775 4444444 59999998542 3 46899998766555544321
Q ss_pred HhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcC
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAG 231 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AG 231 (945)
..++.+..+...+++..+|+++.+.+..........++||||++|++.+|+++.+|++.||
T Consensus 62 -------------------~~pi~~G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~~ag 122 (336)
T PRK13928 62 -------------------IRPLRDGVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAEQAG 122 (336)
T ss_pred -------------------EccCCCCeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 1112233456667888888888866543322334579999999999999999999999999
Q ss_pred CccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHH
Q psy2902 232 LEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIL 311 (945)
Q Consensus 232 l~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~ 311 (945)
++.+.+++||+|||++|+... ..+..++|||+||||||++++.. .. . ...++..+||.+||+.|++++.
T Consensus 123 ~~~~~li~ep~Aaa~~~g~~~--~~~~~~lVvDiGggttdvsvv~~----g~-~----~~~~~~~lGG~did~~i~~~l~ 191 (336)
T PRK13928 123 AKKVYLIEEPLAAAIGAGLDI--SQPSGNMVVDIGGGTTDIAVLSL----GG-I----VTSSSIKVAGDKFDEAIIRYIR 191 (336)
T ss_pred CCceEecccHHHHHHHcCCcc--cCCCeEEEEEeCCCeEEEEEEEe----CC-E----EEeCCcCCHHHHHHHHHHHHHH
Confidence 999999999999999998865 34667999999999999999986 21 1 1235678999999999999999
Q ss_pred HHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHH
Q psy2902 312 DEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTI 387 (945)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~ 387 (945)
.+|....+ ...||++|+.++.... ..+.+.. .+........+.++|++|++++.+.++++.
T Consensus 192 ~~~~~~~~-------------~~~ae~lK~~~~~~~~~~~~~~~~v~g--~~~~~~~~~~~~i~~~~~~eii~~~~~~i~ 256 (336)
T PRK13928 192 KKYKLLIG-------------ERTAEEIKIKIGTAFPGAREEEMEIRG--RDLVTGLPKTITVTSEEIREALKEPVSAIV 256 (336)
T ss_pred HHhchhcC-------------HHHHHHHHHHhcccccccCCcEEEEec--ccccCCCceEEEECHHHHHHHHHHHHHHHH
Confidence 87753211 3579999999876421 2222211 111111245689999999999999999999
Q ss_pred HHHHHHHHHcCC--CCCCCC-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 388 EPCRIAIKDAGI--KVSDIN-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 388 ~~i~~~l~~~~~--~~~~i~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
+.+.+.|+.++. ....++ .|+|+||+|++|.+++++++.|+.++....||+++||+|||+++..+
T Consensus 257 ~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~ipgi~e~l~~~~~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 257 QAVKSVLERTPPELSADIIDRGIIMTGGGALLHGLDKLLAEETKVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HHHHHHHHhCCccccHhhcCCCEEEECcccchhhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhch
Confidence 999999998863 345677 79999999999999999999999999888899999999999998754
|
|
| >PRK13929 rod-share determining protein MreBH; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-35 Score=322.38 Aligned_cols=308 Identities=24% Similarity=0.357 Sum_probs=243.0
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCc--EEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGE--ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~--~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
.+||||||+++++ |.++... +.+ .||+|+++.++. ..+|.+|..+..+.|.++...
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------------- 63 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------------- 63 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE-------------
Confidence 5999999999975 5555543 443 499999986544 579999999888888765321
Q ss_pred HHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCC--cEEEEcCCCCCHHHHHHHHHHHH
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEIT--EAVITVPAYFNDAQRQATKDAGR 228 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~--~~VitVPa~~~~~qr~~l~~Aa~ 228 (945)
.++....+...++++.+|++++..++..++..+. .+|||||++|++.||+++.+|++
T Consensus 64 ---------------------~pi~~G~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~a~~ 122 (335)
T PRK13929 64 ---------------------RPMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVK 122 (335)
T ss_pred ---------------------ecCCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 1122233456689999999999998877776553 79999999999999999999999
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
.||++.+.+++||+|||++|+... .....++|+|+|+||+|++++.+ .. .+ ..++..+||.+||+.|.+
T Consensus 123 ~ag~~~~~li~ep~Aaa~~~g~~~--~~~~~~lvvDiG~gtt~v~vi~~----~~-~~----~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 123 NCGAKNVHLIEEPVAAAIGADLPV--DEPVANVVVDIGGGTTEVAIISF----GG-VV----SCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HcCCCeeEeecCHHHHHHhcCCCc--CCCceEEEEEeCCCeEEEEEEEe----CC-EE----EecCcCCHHHHHHHHHHH
Confidence 999999999999999999998765 34677999999999999999986 22 11 234567999999999999
Q ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHH
Q psy2902 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELIT 384 (945)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~ 384 (945)
++.+.+.- .. . ...||++|+.++.... ..+.+.. .+........+.+++++|++++.+.+.
T Consensus 192 ~l~~~~~~----~~--~-------~~~AE~iK~~l~~~~~~~~~~~~~v~g--~~~~~~~p~~i~i~~~~~~~~i~~~l~ 256 (335)
T PRK13929 192 FVRKKYNL----LI--G-------ERTAEQVKMEIGYALIEHEPETMEVRG--RDLVTGLPKTITLESKEIQGAMRESLL 256 (335)
T ss_pred HHHHHhCc----Cc--C-------HHHHHHHHHHHcCCCCCCCCceEEEeC--CccCCCCCeEEEEcHHHHHHHHHHHHH
Confidence 99876532 11 1 3579999999987421 1222211 111111235789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC--CCCC-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 385 RTIEPCRIAIKDAGIKV--SDIN-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 385 ~i~~~i~~~l~~~~~~~--~~i~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
++.+.+.+.|+.+.... ..++ .|+|+||+|++|.+.+++++.|+.++....||+++||.||+..-
T Consensus 257 ~i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~s~lpgl~e~l~~~~~~~v~~~~~P~~~Va~Ga~~~~ 324 (335)
T PRK13929 257 HILEAIRATLEDCPPELSGDIVDRGVILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIGTGRSL 324 (335)
T ss_pred HHHHHHHHHHHhCCcccchhhcCCCEEEEchhhhhhhHHHHHHHHHCCCceeCCCHHHHHHHHHHHHH
Confidence 99999999999986443 4577 69999999999999999999999999888999999999999764
|
|
| >PRK13927 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=308.09 Aligned_cols=311 Identities=25% Similarity=0.382 Sum_probs=232.5
Q ss_pred CceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC-Cc-EEecHHHHHhhhhCCCchhHHHHHhhCCCCCc
Q psy2902 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-GE-ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNE 148 (945)
Q Consensus 71 ~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~ 148 (945)
+..|||||||++++++.. +...++ .+||+|++..+ +. .++|.+|..+....|.++.
T Consensus 5 ~~~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~------------- 62 (334)
T PRK13927 5 SNDLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIV------------- 62 (334)
T ss_pred cceeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEE-------------
Confidence 345999999999998443 322233 27999999765 33 5899999887665554431
Q ss_pred HHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHH
Q psy2902 149 KEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGR 228 (945)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 228 (945)
...++....+...+.+..+|+++........ .....+|+|+|++|++.+|+++++|++
T Consensus 63 ---------------------~~~pi~~G~i~d~~~~~~ll~~~~~~~~~~~-~~~~~~vi~vP~~~~~~~r~~~~~a~~ 120 (334)
T PRK13927 63 ---------------------AIRPMKDGVIADFDVTEKMLKYFIKKVHKNF-RPSPRVVICVPSGITEVERRAVRESAL 120 (334)
T ss_pred ---------------------EEecCCCCeecCHHHHHHHHHHHHHHHhhcc-CCCCcEEEEeCCCCCHHHHHHHHHHHH
Confidence 1112222333444556677777776654432 222489999999999999999999999
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
.||++.+.+++||+|||++|+... .....++|||+||||+|+++++. .. . ...+...+||.+||+.|.+
T Consensus 121 ~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lvvDiGggttdvs~v~~----~~-~----~~~~~~~lGG~~id~~l~~ 189 (334)
T PRK13927 121 GAGAREVYLIEEPMAAAIGAGLPV--TEPTGSMVVDIGGGTTEVAVISL----GG-I----VYSKSVRVGGDKFDEAIIN 189 (334)
T ss_pred HcCCCeeccCCChHHHHHHcCCcc--cCCCeEEEEEeCCCeEEEEEEec----CC-e----EeeCCcCChHHHHHHHHHH
Confidence 999999999999999999998765 34566899999999999999976 22 1 1234567999999999999
Q ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHH
Q psy2902 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELIT 384 (945)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~ 384 (945)
++.+++.. .. + .+.||++|+.++.... ..+.+.. .+........+.++|++|++++.+.++
T Consensus 190 ~l~~~~~~----~~--~-------~~~ae~iK~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~ 254 (334)
T PRK13927 190 YVRRNYNL----LI--G-------ERTAERIKIEIGSAYPGDEVLEMEVRG--RDLVTGLPKTITISSNEIREALQEPLS 254 (334)
T ss_pred HHHHHhCc----Cc--C-------HHHHHHHHHHhhccCCCCCCceEEEeC--cccCCCCCeEEEECHHHHHHHHHHHHH
Confidence 99876632 11 1 3568999999986432 2222211 111111245789999999999999999
Q ss_pred HHHHHHHHHHHHcCCCC--CCCC-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 385 RTIEPCRIAIKDAGIKV--SDIN-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 385 ~i~~~i~~~l~~~~~~~--~~i~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
++.+.+.++|+.+.... ..++ .|+|+||+|++|.++++|++.|+.++....||+++||.|||+++..
T Consensus 255 ~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipgl~~~l~~~~~~~v~~~~~P~~ava~Ga~~~~~~ 324 (334)
T PRK13927 255 AIVEAVKVALEQTPPELAADIVDRGIVLTGGGALLRGLDKLLSEETGLPVHVAEDPLTCVARGTGKALEN 324 (334)
T ss_pred HHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhhhHHHHHHHHHHCCCcEecCCHHHHHHHHHHHHHhh
Confidence 99999999999886432 2234 5999999999999999999999999988899999999999999864
|
|
| >TIGR00904 mreB cell shape determining protein, MreB/Mrl family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=305.14 Aligned_cols=310 Identities=26% Similarity=0.360 Sum_probs=229.3
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC----Cc--EEecHHHHHhhhhCCCchhHHHHHhhCCCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN----GE--ILVGAPAKRQAVTNPKNTIYAAKRLIGRKF 146 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~----~~--~~~G~~A~~~~~~~~~~~i~~~k~llg~~~ 146 (945)
-+||||||++|++++...+ .++ ..||+|+++.+ .. ..+|.+|.....+.|.+..
T Consensus 4 ~~giDlGt~~s~i~~~~~~--~~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~----------- 63 (333)
T TIGR00904 4 DIGIDLGTANTLVYVKGRG--IVL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV----------- 63 (333)
T ss_pred eeEEecCcceEEEEECCCC--EEE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE-----------
Confidence 3999999999998774322 333 27999999854 22 6699999876555554431
Q ss_pred CcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHH
Q psy2902 147 NEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDA 226 (945)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~A 226 (945)
...++.+..+...+.+..+++++..............+++|||++|+..+|+++++|
T Consensus 64 -----------------------~~~pi~~G~i~d~~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~~ 120 (333)
T TIGR00904 64 -----------------------AIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVKES 120 (333)
T ss_pred -----------------------EEecCCCCEEEcHHHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHHHH
Confidence 111122223334455566667666555432222224899999999999999999999
Q ss_pred HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHH
Q psy2902 227 GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306 (945)
Q Consensus 227 a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l 306 (945)
++.||++.+.+++||+|||++|+... ..+..++|||+|+||+|+++++. ... ...++..+||.+||+.|
T Consensus 121 ~~~ag~~~~~li~ep~aaa~~~g~~~--~~~~~~lVvDiG~gttdvs~v~~----~~~-----~~~~~~~lGG~did~~l 189 (333)
T TIGR00904 121 ALSAGAREVYLIEEPMAAAIGAGLPV--EEPTGSMVVDIGGGTTEVAVISL----GGI-----VVSRSIRVGGDEFDEAI 189 (333)
T ss_pred HHHcCCCeEEEecCHHHHHHhcCCcc--cCCceEEEEEcCCCeEEEEEEEe----CCE-----EecCCccchHHHHHHHH
Confidence 99999999999999999999998754 34567899999999999999986 221 12345679999999999
Q ss_pred HHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce-----eeeeceeeccCCCCeEEEEEEcHHHHHHHHHH
Q psy2902 307 IDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT-----EINEPYIAMSNGAPVHLNLKITRAKLELLVDE 381 (945)
Q Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~ 381 (945)
++++.+++.. ... .+.||++|+.++..... .+.+.. .+..........++++++.+++.+
T Consensus 190 ~~~l~~~~~~----~~~---------~~~ae~lK~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~ 254 (333)
T TIGR00904 190 INYIRRTYNL----LIG---------EQTAERIKIEIGSAYPLNDEPRKMEVRG--RDLVTGLPRTIEITSVEVREALQE 254 (333)
T ss_pred HHHHHHHhcc----cCC---------HHHHHHHHHHHhccccccccccceeecC--ccccCCCCeEEEECHHHHHHHHHH
Confidence 9999876531 111 45799999999764321 122111 110011123568999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCC-CCC-C-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 382 LITRTIEPCRIAIKDAGIKV-SDI-N-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 382 ~i~~i~~~i~~~l~~~~~~~-~~i-~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.+.++.+.+.+.|+.+.... .++ + .|+|+||+|++|.++++|++.|+.++....||+++||.||++++..
T Consensus 255 ~~~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 255 PVNQIVEAVKRTLEKTPPELAADIVERGIVLTGGGALLRNLDKLLSKETGLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred HHHHHHHHHHHHHHhCCchhhhhhccCCEEEECcccchhhHHHHHHHHHCCCceecCChHHHHHHHHHHHHhC
Confidence 99999999999999876542 233 3 6999999999999999999999999998999999999999998753
|
A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK. |
| >PRK13930 rod shape-determining protein MreB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-32 Score=300.47 Aligned_cols=310 Identities=25% Similarity=0.334 Sum_probs=234.5
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC-C-cEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-G-EILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~-~-~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
.+||||||++++++++..+ .++ .+||+|++... + ..++|.+|.......|.+.-
T Consensus 10 ~vgiDlGt~~t~i~~~~~~--~~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--------------- 65 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG--IVL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--------------- 65 (335)
T ss_pred ceEEEcCCCcEEEEECCCC--EEE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE---------------
Confidence 4999999999999886332 232 25999999753 2 36899999876554443321
Q ss_pred HHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHc
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIA 230 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~A 230 (945)
...++....+...+.+..+|+++.+.+..........+++|+|++|+..+|+++.+|++.+
T Consensus 66 -------------------~~~pi~~G~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~e~~ 126 (335)
T PRK13930 66 -------------------AIRPLKDGVIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHA 126 (335)
T ss_pred -------------------EeecCCCCeEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHHHHc
Confidence 0112222333445677888888887765544445678999999999999999999999999
Q ss_pred CCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHH
Q psy2902 231 GLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310 (945)
Q Consensus 231 Gl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l 310 (945)
|++.+.+++||+|||++++... .....++|||+|+||+|++++... . .+ ..+...+||.+||+.|.+++
T Consensus 127 g~~~~~lv~ep~AAa~a~g~~~--~~~~~~lVvDiG~gttdvs~v~~g----~-~~----~~~~~~lGG~~id~~l~~~l 195 (335)
T PRK13930 127 GAREVYLIEEPMAAAIGAGLPV--TEPVGNMVVDIGGGTTEVAVISLG----G-IV----YSESIRVAGDEMDEAIVQYV 195 (335)
T ss_pred CCCeEEecccHHHHHHhcCCCc--CCCCceEEEEeCCCeEEEEEEEeC----C-EE----eecCcCchhHHHHHHHHHHH
Confidence 9999999999999999998754 234567999999999999999762 1 11 24567899999999999999
Q ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce----eeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHH
Q psy2902 311 LDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT----EINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRT 386 (945)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 386 (945)
.+++. ... + ...||++|+.++..... .+.+.. .+........+.+++++|++++.+.++++
T Consensus 196 ~~~~~----~~~--~-------~~~ae~~K~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~e~i~~~~~~i 260 (335)
T PRK13930 196 RRKYN----LLI--G-------ERTAEEIKIEIGSAYPLDEEESMEVRG--RDLVTGLPKTIEISSEEVREALAEPLQQI 260 (335)
T ss_pred HHHhC----CCC--C-------HHHHHHHHHHhhcCcCCCCCceEEEEC--ccCCCCCCeeEEECHHHHHHHHHHHHHHH
Confidence 87653 111 1 35789999999865432 122211 11111123478899999999999999999
Q ss_pred HHHHHHHHHHcCCCC--CCCCc-EEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 387 IEPCRIAIKDAGIKV--SDIND-IILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~--~~i~~-ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.+.+.++|+.+.... ..++. |+|+||+|++|.++++|++.|+.++....+|++++|.|||+.+..
T Consensus 261 ~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~ipg~~~~l~~~~~~~v~~~~~p~~ava~Ga~~~~~~ 328 (335)
T PRK13930 261 VEAVKSVLEKTPPELAADIIDRGIVLTGGGALLRGLDKLLSEETGLPVHIAEDPLTCVARGTGKALEN 328 (335)
T ss_pred HHHHHHHHHhCCHHHhhHHHhCCEEEECchhcchhHHHHHHHHHCCCceecCCHHHHHHHHHHHHHhC
Confidence 999999999875332 23454 999999999999999999999999888889999999999999864
|
|
| >PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=280.92 Aligned_cols=309 Identities=29% Similarity=0.409 Sum_probs=224.1
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC--cEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG--EILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~--~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
-+||||||+++.++. .+.-.++. .||+|+++.+. -..+|.+|.....+.|.+.
T Consensus 3 ~igIDLGT~~t~i~~--~~~Giv~~-------epSvVA~~~~~~~i~avG~~A~~m~gktp~~i---------------- 57 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYV--KGKGIVLN-------EPSVVAYDKDTGKILAVGDEAKAMLGKTPDNI---------------- 57 (326)
T ss_dssp EEEEEE-SSEEEEEE--TTTEEEEE-------EES-EEEETTT--EEEESHHHHTTTTS-GTTE----------------
T ss_pred ceEEecCcccEEEEE--CCCCEEEe-------cCcEEEEECCCCeEEEEhHHHHHHhhcCCCcc----------------
Confidence 499999999998733 22222222 29999998753 2448999986655554432
Q ss_pred HHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHc
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIA 230 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~A 230 (945)
.+..++.+..+...+++..+|+++.+.+.......-..++++||+..++.+|+++.+|+..|
T Consensus 58 ------------------~~~~Pl~~GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~~~a 119 (326)
T PF06723_consen 58 ------------------EVVRPLKDGVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAARQA 119 (326)
T ss_dssp ------------------EEE-SEETTEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHHHHT
T ss_pred ------------------EEEccccCCcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 13445566777788999999999999887643445678999999999999999999999999
Q ss_pred CCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHH
Q psy2902 231 GLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYI 310 (945)
Q Consensus 231 Gl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l 310 (945)
|...+.+++||.|||+..+.+- ..+...||+|+||||||++++.. .+.+.- .....||++||+++.+|+
T Consensus 120 Ga~~V~li~ep~AaAiGaGl~i--~~~~g~miVDIG~GtTdiavisl-----ggiv~s----~si~~gG~~~DeaI~~~i 188 (326)
T PF06723_consen 120 GARKVYLIEEPIAAAIGAGLDI--FEPRGSMIVDIGGGTTDIAVISL-----GGIVAS----RSIRIGGDDIDEAIIRYI 188 (326)
T ss_dssp T-SEEEEEEHHHHHHHHTT--T--TSSS-EEEEEE-SS-EEEEEEET-----TEEEEE----EEES-SHHHHHHHHHHHH
T ss_pred CCCEEEEecchHHHHhcCCCCC--CCCCceEEEEECCCeEEEEEEEC-----CCEEEE----EEEEecCcchhHHHHHHH
Confidence 9999999999999999998876 45677899999999999999985 222211 123569999999999999
Q ss_pred HHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHH
Q psy2902 311 LDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRT 386 (945)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i 386 (945)
+++|.-..+ ...||++|+.+++... ..+.+. ..+......-.+.++-+++.+++.+.+..+
T Consensus 189 r~~y~l~Ig-------------~~tAE~iK~~~g~~~~~~~~~~~~v~--Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I 253 (326)
T PF06723_consen 189 REKYNLLIG-------------ERTAEKIKIEIGSASPPEEEESMEVR--GRDLITGLPKSIEITSSEVREAIEPPVDQI 253 (326)
T ss_dssp HHHHSEE---------------HHHHHHHHHHH-BSS--HHHHEEEEE--EEETTTTCEEEEEEEHHHHHHHHHHHHHHH
T ss_pred HHhhCcccC-------------HHHHHHHHHhcceeeccCCCceEEEE--CccccCCCcEEEEEcHHHHHHHHHHHHHHH
Confidence 999864333 6689999999987532 223332 222223346689999999999999999999
Q ss_pred HHHHHHHHHHcCCCC-CCC--CcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 387 IEPCRIAIKDAGIKV-SDI--NDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~-~~i--~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
.+.|+++|+....+. .|| +.|+|+||+|+++.+.+.|++.++.++....+|.++||.||.....
T Consensus 254 ~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~l~Gl~~~i~~~~~~pV~va~~P~~~va~G~~~~l~ 320 (326)
T PF06723_consen 254 VEAIKEVLEKTPPELAADILENGIVLTGGGALLRGLDEYISEETGVPVRVADDPLTAVARGAGKLLE 320 (326)
T ss_dssp HHHHHHHHHTS-HHHHHHHHHH-EEEESGGGGSBTHHHHHHHHHSS-EEE-SSTTTHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHCCEEEEChhhhhccHHHHHHHHHCCCEEEcCCHHHHHHHHHHHHHh
Confidence 999999999864432 133 4699999999999999999999999999999999999999987654
|
In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A. |
| >COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=243.53 Aligned_cols=314 Identities=26% Similarity=0.371 Sum_probs=240.5
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC--Cc--EEecHHHHHhhhhCCCchhHHHHHhhCCCCC
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN--GE--ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFN 147 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~--~~--~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~ 147 (945)
.-+|||+||.|+.|..- +. -++.+ -||+|+++.. .. ..+|.+|+...-+.|.+.
T Consensus 7 ~diGIDLGTanTlV~~k--~k-gIVl~------ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni------------- 64 (342)
T COG1077 7 NDIGIDLGTANTLVYVK--GK-GIVLN------EPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNI------------- 64 (342)
T ss_pred ccceeeecccceEEEEc--Cc-eEEec------CceEEEEeecCCCceEEEehHHHHHHhccCCCCc-------------
Confidence 35999999999998554 22 24443 3999999873 22 347888865544444432
Q ss_pred cHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhC-CCCCcEEEEcCCCCCHHHHHHHHHH
Q psy2902 148 EKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLG-GEITEAVITVPAYFNDAQRQATKDA 226 (945)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~-~~~~~~VitVPa~~~~~qr~~l~~A 226 (945)
.+.-++.+..+...+++..+|+|+.+....... .....++++||..-++.+|+++++|
T Consensus 65 ---------------------~aiRPmkdGVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea 123 (342)
T COG1077 65 ---------------------VAIRPMKDGVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEA 123 (342)
T ss_pred ---------------------eEEeecCCcEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHH
Confidence 244556677788889999999999998864433 4455799999999999999999999
Q ss_pred HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHH
Q psy2902 227 GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306 (945)
Q Consensus 227 a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l 306 (945)
++.||...+.++.||.|||+..+..-. .+..-+|||+||||+|++++++........+ .+||+.||+++
T Consensus 124 ~~~aGa~~V~lieEp~aAAIGaglpi~--ep~G~mvvDIGgGTTevaVISlggiv~~~Si---------rv~GD~~De~I 192 (342)
T COG1077 124 AESAGAREVYLIEEPMAAAIGAGLPIM--EPTGSMVVDIGGGTTEVAVISLGGIVSSSSV---------RVGGDKMDEAI 192 (342)
T ss_pred HHhccCceEEEeccHHHHHhcCCCccc--CCCCCEEEEeCCCceeEEEEEecCEEEEeeE---------EEecchhhHHH
Confidence 999999999999999999999887653 3445688999999999999998443323333 35999999999
Q ss_pred HHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce----eeeeceeeccCCCCeEEEEEEcHHHHHHHHHHH
Q psy2902 307 IDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT----EINEPYIAMSNGAPVHLNLKITRAKLELLVDEL 382 (945)
Q Consensus 307 ~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~----~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~ 382 (945)
.+|++++|+-..+ ...+|++|......... ....+....+.-....-.++++-+++.+++++.
T Consensus 193 i~yvr~~~nl~IG-------------e~taE~iK~eiG~a~~~~~~~~~~~eV~Grdl~~GlPk~i~i~s~ev~eal~~~ 259 (342)
T COG1077 193 IVYVRKKYNLLIG-------------ERTAEKIKIEIGSAYPEEEDEELEMEVRGRDLVTGLPKTITINSEEIAEALEEP 259 (342)
T ss_pred HHHHHHHhCeeec-------------HHHHHHHHHHhcccccccCCccceeeEEeeecccCCCeeEEEcHHHHHHHHHHH
Confidence 9999999875544 44689999988765331 111222222211122446899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCCC-C-CCc-EEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 383 ITRTIEPCRIAIKDAGIKVS-D-IND-IILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 383 i~~i~~~i~~~l~~~~~~~~-~-i~~-ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
++.+.+.++..|+....+.. | ++. ++|+||+|.+..+.+.+++..+.++....+|.+|||.|+.+....+
T Consensus 260 v~~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrglD~~i~~et~~pv~ia~~pL~~Va~G~G~~le~~ 332 (342)
T COG1077 260 LNGIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRGLDRLLSEETGVPVIIADDPLTCVAKGTGKALEAL 332 (342)
T ss_pred HHHHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcCchHhHHhccCCeEEECCChHHHHHhccchhhhhh
Confidence 99999999999998654321 2 344 9999999999999999999999999999999999999998877644
|
|
| >TIGR02529 EutJ ethanolamine utilization protein EutJ family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-27 Score=245.17 Aligned_cols=206 Identities=24% Similarity=0.320 Sum_probs=175.1
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCC
Q psy2902 176 GKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGK 255 (945)
Q Consensus 176 ~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~ 255 (945)
+..+...+.++++|+++++.++.+++..+.++|+|||++|++.||+++.+|++.||++++.++.||.|||++|+..
T Consensus 33 ~g~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~---- 108 (239)
T TIGR02529 33 DGIVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK---- 108 (239)
T ss_pred CCeEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC----
Confidence 3445667889999999999999999888999999999999999999999999999999999999999999998643
Q ss_pred CCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q psy2902 256 SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKAS 335 (945)
Q Consensus 256 ~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 335 (945)
..+|+|+||||+|+++++. +.+. . ..+..+||++||+.|.+.+. .+ ..+
T Consensus 109 ---~~~vvDiGggtt~i~i~~~------G~i~--~-~~~~~~GG~~it~~Ia~~~~--------i~-----------~~~ 157 (239)
T TIGR02529 109 ---NGAVVDVGGGTTGISILKK------GKVI--Y-SADEPTGGTHMSLVLAGAYG--------IS-----------FEE 157 (239)
T ss_pred ---CcEEEEeCCCcEEEEEEEC------CeEE--E-EEeeecchHHHHHHHHHHhC--------CC-----------HHH
Confidence 2599999999999999864 2221 1 33567899999998865432 22 468
Q ss_pred HHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccc
Q psy2902 336 AERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTR 415 (945)
Q Consensus 336 ~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 415 (945)
||++|+.++. .+++.+++.+.++++.+.+.+.|++.+ ++.|+|+||+|+
T Consensus 158 AE~~K~~~~~--------------------------~~~~~~~i~~~~~~i~~~i~~~l~~~~-----~~~v~LtGG~a~ 206 (239)
T TIGR02529 158 AEEYKRGHKD--------------------------EEEIFPVVKPVYQKMASIVKRHIEGQG-----VKDLYLVGGACS 206 (239)
T ss_pred HHHHHHhcCC--------------------------HHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCEEEEECchhc
Confidence 8999986541 356778999999999999999998653 579999999999
Q ss_pred cHHHHHHHHHHhCCCCCCCCCCCchhhhhHHH
Q psy2902 416 MPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 416 ~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~ 447 (945)
+|.+++.+++.|+.++..+.||++++|.|||+
T Consensus 207 ipgl~e~l~~~lg~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 207 FSGFADVFEKQLGLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred chhHHHHHHHHhCCCcccCCCCCeehhheeec
Confidence 99999999999999999899999999999986
|
|
| >PRK15080 ethanolamine utilization protein EutJ; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-24 Score=227.87 Aligned_cols=203 Identities=27% Similarity=0.368 Sum_probs=173.6
Q ss_pred hhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceE
Q psy2902 181 PPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNI 260 (945)
Q Consensus 181 ~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~v 260 (945)
..+.+...|+++++.++.+++..+..++++||++|+..++.++.+|++.||++...+++||.|++.+|.... .
T Consensus 65 di~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~~-------~ 137 (267)
T PRK15080 65 DFIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGIDN-------G 137 (267)
T ss_pred eHHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCCC-------c
Confidence 357777899999999999988889999999999999999999999999999999999999999999875431 5
Q ss_pred EEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHH
Q psy2902 261 VVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAK 340 (945)
Q Consensus 261 lVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K 340 (945)
+++|+||||||++++.- +.+. . ..+..+||.+||+.|++++. .+ .++||++|
T Consensus 138 ~vvDIGggtt~i~v~~~------g~~~--~-~~~~~~GG~~it~~Ia~~l~--------i~-----------~~eAE~lK 189 (267)
T PRK15080 138 AVVDIGGGTTGISILKD------GKVV--Y-SADEPTGGTHMSLVLAGAYG--------IS-----------FEEAEQYK 189 (267)
T ss_pred EEEEeCCCcEEEEEEEC------CeEE--E-EecccCchHHHHHHHHHHhC--------CC-----------HHHHHHHH
Confidence 89999999999999863 2221 1 24678999999999987652 11 46788888
Q ss_pred HHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHH
Q psy2902 341 IELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQ 420 (945)
Q Consensus 341 ~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~ 420 (945)
+.++ +++++.+++++.++++.+.+++.++.. +++.|+|+||+|++|.++
T Consensus 190 ~~~~--------------------------~~~~~~~ii~~~~~~i~~~i~~~l~~~-----~~~~IvLtGG~s~lpgl~ 238 (267)
T PRK15080 190 RDPK--------------------------HHKEIFPVVKPVVEKMASIVARHIEGQ-----DVEDIYLVGGTCCLPGFE 238 (267)
T ss_pred hccC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCcccchhHH
Confidence 7642 246788999999999999999999864 468999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 421 EKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 421 ~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
+.+++.|+.++....+|+.++|.|||+++
T Consensus 239 e~l~~~lg~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 239 EVFEKQTGLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHhCCCcccCCCchHHHHHHHHhhC
Confidence 99999999999989999999999999874
|
|
| >TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=251.23 Aligned_cols=160 Identities=21% Similarity=0.232 Sum_probs=138.5
Q ss_pred CccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 689 g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
..++...++++|+++|.|+++.+.+.+...| |.|
T Consensus 656 ~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~----g~G------------------------------------------ 689 (871)
T TIGR03835 656 NVNLVYEEEVPQILFFNNQIKEIKYTRHTVD----GNT------------------------------------------ 689 (871)
T ss_pred ccceEEecccCHHHHhCCCeEEEEEEEeecc----CCC------------------------------------------
Confidence 4688899999999999999999988664432 111
Q ss_pred ecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHH
Q psy2902 769 PHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFST 848 (945)
Q Consensus 769 ~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~e 848 (945)
.....+.++++|+||+|+++|++|+|+|+|++.+++ .|||||+|++++|+.|+|+|+|||+.++|+|.+
T Consensus 690 ---------~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpgg--~GDLyVvIkVKPHp~FrRdGdDL~~~v~ISL~E 758 (871)
T TIGR03835 690 ---------ESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGNG--CGDLKVVFKVIPSNFFQIKNDGLHVAALVDPLV 758 (871)
T ss_pred ---------cceeeeeEEEEEecCCCCCCCCEEEeccccCCCCCC--CCCEEEEEEEcCCCCeEEECCeEEEEEecCHHH
Confidence 112234568999999999999999999999986443 499999999999999999999999999999999
Q ss_pred HhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCCCccEEEEEEEE-CCC
Q psy2902 849 AALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIE-TPV 906 (945)
Q Consensus 849 al~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~-~p~ 906 (945)
||+|+++.|+||||++.+.||+++++|+++||+|+|||.. ++.+|||||+|.|. +++
T Consensus 759 ALLGgtIeIpTLDGrVkLkIPpgTqpGqvLRIkGKGMP~~-~~~RGDLyV~f~V~~~~k 816 (871)
T TIGR03835 759 AYNGGIIDVFGPNKLFNVRIPGGIKVNDQVIFKDLGLTKT-KYDKGSLIVHLYYSSVMK 816 (871)
T ss_pred HhcCCEEEeeCCCCCEEEeeCCCCCCCcEEEECCCCCCCC-CCCCCCEEEEEEEeeccc
Confidence 9999999999999998889999999999999999999964 35689999999998 454
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. |
| >COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-25 Score=234.97 Aligned_cols=224 Identities=26% Similarity=0.459 Sum_probs=170.1
Q ss_pred HHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCC-CCCCCCcccccccccccccccccccC
Q psy2902 596 DKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDP-NMSGSSASAEASNFADAFGDIFGDIF 674 (945)
Q Consensus 596 d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~-~~~g~~~~~~~~~f~d~f~~~F~~~~ 674 (945)
++.+++++.++|++...+.+.+++. +||.++.+.-. ..|+.+ +++++++ .+++-|+++|+...++-
T Consensus 40 ~~~AeeKFKEI~eAYEVLsD~eKRa----~YD~fG~~~~~-------~gg~gg~g~~~fgg-~~~DIF~~~FgGg~~~~- 106 (371)
T COG0484 40 DKEAEEKFKEINEAYEVLSDPEKRA----AYDQFGHAGFK-------AGGFGGFGFGGFGG-DFGDIFEDFFGGGGGGR- 106 (371)
T ss_pred CHHHHHHHHHHHHHHHHhCCHHHHH----HhhccCccccc-------cCCcCCCCcCCCCC-CHHHHHHHhhcCCCccc-
Confidence 5666777778888888888777764 58888866544 122222 2333332 45677889995433222
Q ss_pred CCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc-------Ccc
Q psy2902 675 GSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT-------SPI 734 (945)
Q Consensus 675 g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~-------~~~ 734 (945)
...+ +.+++.+...+++++|++.+.+.....+......| ..+|+.|+|+|..... .++
T Consensus 107 ~~~~--~~~rG~Dl~~~l~isleEa~~G~~~~i~~~~~~~C~~C~GsGak~gt~~~tC~tC~G~G~v~~~~~~g~~~~~~ 184 (371)
T COG0484 107 RRPN--RPRRGADLRYNLEITLEEAVFGVKKEIRVTRSVTCSTCHGSGAKPGTDPKTCPTCNGSGQVRTVQRTGFFSFQQ 184 (371)
T ss_pred CCCC--CcccCCceEEEEEeEhhhhccCceeeEecceeeECCcCCCCCCCCCCCCCcCCCCCCcCeEEEEEeeeEEEEEE
Confidence 2221 24577889999999999999887766666666554 4899999999985433 588
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eec
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPH 770 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~ 770 (945)
+|+.|+|+|++ +.++|+.|+|.|++ .+|
T Consensus 185 ~C~~C~G~G~~--------i~~pC~~C~G~G~v~~~~~i~V~IPaGv~~g~~ir~~g~G~~g~~Ggp~GDLyv~i~v~~h 256 (371)
T COG0484 185 TCPTCNGTGKI--------IKDPCGKCKGKGRVKKKKSISVNIPAGVDDGDRIRLSGEGEAGPNGGPAGDLYVFVHVKPH 256 (371)
T ss_pred ECCCCccceeE--------CCCCCCCCCCCCeEeeeeEEEEECCCCCccCCEEEEecCcccCCCCCCCccEEEEEEeecC
Confidence 99999999999 89999999999972 679
Q ss_pred CCcccCCC---------------ceEeeeeeE----EEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcc
Q psy2902 771 PCLDCNGI---------------GRIKRNKTL----EVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVF 831 (945)
Q Consensus 771 ~c~~c~G~---------------g~~~~~~~l----~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~ 831 (945)
+.|.|.|. |...+.++| +|+||+|+++|++++++|+|||..++...|||||+|+|..|..+
T Consensus 257 ~~F~R~g~dL~~~~~Is~~~AalG~~i~vptl~g~~~l~ip~Gtq~G~~~rl~gkG~p~~~~~~~GDl~v~v~v~~P~~l 336 (371)
T COG0484 257 PIFERDGDDLYCEVPISFTEAALGGEIEVPTLDGRVKLKIPAGTQTGEVFRLRGKGMPKLRSGGRGDLYVRVKVETPKNL 336 (371)
T ss_pred CCeEECCCceEeccccCHHHHhcCCEEEEEecCCCEEEecCCCCccCcEEEEcCCCccccCCCCcCCEEEEEEEEcCCCC
Confidence 99999994 444444444 89999999999999999999999888888999999999999999
Q ss_pred cccCCCceeEE
Q psy2902 832 ERDGDDLHYEM 842 (945)
Q Consensus 832 ~r~g~dl~~~~ 842 (945)
+.++.+|+.++
T Consensus 337 s~~q~~lL~~~ 347 (371)
T COG0484 337 SDEQKELLEEF 347 (371)
T ss_pred CHHHHHHHHHH
Confidence 98887776544
|
|
| >PRK14285 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-21 Score=217.12 Aligned_cols=171 Identities=25% Similarity=0.413 Sum_probs=135.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
+.|+++|+...+... ... ..++.+...++.++|++.+.+.....+......| ...|+.|+|+|
T Consensus 98 d~f~~~fgg~~~~~~-~~~---~~~g~di~~~l~vtlee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 173 (365)
T PRK14285 98 DIFDSFFTGNRGQDK-NRK---HEKGQDLTYQIEISLEDAYLGYKNNINITRNMLCESCLGKKSEKGTSPSICNMCNGSG 173 (365)
T ss_pred HHHHHhhcCCcCCCC-CcC---CCCCCCEEEEEEEEHHHhhCCeEEEEEeeecccCCCCCCcccCCCCCCccCCCccCce
Confidence 446677764333222 211 2356788999999999999999888888777665 36899999999
Q ss_pred cccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
.... +.+++|+.|+|.|++ +..+|+.|+|+|.+
T Consensus 174 ~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 245 (365)
T PRK14285 174 RVMQGGGFFRVTTTCPKCYGNGKI--------ISNPCKSCKGKGSLKKKETIELKIPAGIDDNQQIKMRGKGSVNPDNQQ 245 (365)
T ss_pred eEEecCceeEEeeecCCCCCcccc--------cCCCCCCCCCCCEEeccEEEEEEECCCCCCCCEEEEeeccccCCCCCC
Confidence 7643 357899999999998 78899999999962
Q ss_pred ----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNG 817 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~G 817 (945)
.+|+-|+|+|..+..+ .++++|+||+|+++|++++|+|+|+|.++...+|
T Consensus 246 ~GDL~v~i~v~~h~~f~R~G~dL~~~~~Isl~eAl~G~~~~i~tldG~~v~V~Ip~g~~~g~~irl~GkG~p~~~~~~~G 325 (365)
T PRK14285 246 YGDLYIKILIKPHKIFKRNGKDLYATLPISFTQAALGKEIKIQTIASKKIKIKIPKGTENDEQIIIKNEGMPILHTEKFG 325 (365)
T ss_pred CCCEEEEEEEecCCCeEEeccceEEEEecCHHHHhCCCEEEEECCCCCEEEEEeCCCcCCCcEEEECCCCccCCCCCCCC
Confidence 6788999999544443 2456899999999999999999999977655679
Q ss_pred cEEEEEEEecCCcccccCCCceeEE
Q psy2902 818 NLYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 818 dl~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
||||+|+|.+|+.|++++..++.++
T Consensus 326 DL~V~~~v~~P~~l~~~q~~~l~~l 350 (365)
T PRK14285 326 NLILIIKIKTPKNLNSNAIKLLENL 350 (365)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999999887665543
|
|
| >KOG0713|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.7e-22 Score=203.26 Aligned_cols=298 Identities=27% Similarity=0.364 Sum_probs=211.3
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
.-|+.||.++.++++...++|+ |+-+. ++..+|++|+.||++|||+++|+.||.+|+.|+.+...++.+
T Consensus 27 ~Asd~eIKkAYRKLALk~HPDk---------Npddp--~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~~~~~ 95 (336)
T KOG0713|consen 27 NASDQEIKKAYRKLALKYHPDK---------NPDDP--NANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENKDGEG 95 (336)
T ss_pred CCCHHHHHHHHHHHHHHhCCCC---------CCCCH--HHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccccccc
Confidence 3578999999999999888884 44433 345689999999999999999999999999998854211111
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCcccc-ccCcCcc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGA-KKGTSPI 734 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~-~~~~~~~ 734 (945)
+..+ .++|+.+|+.|+...++.........|.++...++.++++.|.+..........+.|+. .|+-. .-.....
T Consensus 96 g~~~---~~~f~~~f~dfg~~~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~-~g~~~~~~~~~~~ 171 (336)
T KOG0713|consen 96 GGGG---NDIFSAFFGDFGVTVGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA-PGTRKCNCRLEMF 171 (336)
T ss_pred CCcc---cchHHHhhcccccccCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeec-CcccccCChhhhe
Confidence 1111 36677777665322111111222456788888888888888765433332222222211 00000 0000112
Q ss_pred cCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 735 SCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 735 ~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
+|..|.|.... ++ ...|..|.+.++..+..++++.+..|...|....+..+|.|+.- +
T Consensus 172 ~~~~~~g~~~~--------~q-------------~~~~~~~~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~ 229 (336)
T KOG0713|consen 172 TQQEGPGRFQM--------LQ-------------EAVCDECPNVKLVLEEDPLEVEFERGDADGPEEIFELEGEPHID-G 229 (336)
T ss_pred eeccCCChhhh--------hh-------------hhhhccCCccceeecCCceeeeeeecccCCceeeeeccCCccee-c
Confidence 22333333322 11 12344444456667778899999999999999999999999765 6
Q ss_pred CCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeE-EEEeCCCCCCCcEEEECCCCcCCCCC-CC
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKA-FFVIPEGTQSGKIFRLRGKGIKNIRS-SI 892 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~-~~~i~~~~~~g~~~~i~g~G~~~~~~-~~ 892 (945)
.+||+++.+..-+|+.|.+++.++++.+.+++.+++.|+..++.++|+.. .+....++.|+..++.+++|||.... ..
T Consensus 230 ~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~ 309 (336)
T KOG0713|consen 230 VPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEILHLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNE 309 (336)
T ss_pred ccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhhccchhhhhhhhhhccccchhhhhhhccchhhhccch
Confidence 79999999999999999999999999999999999999999999999965 45566789999999999999997654 56
Q ss_pred CccEEEEEEEECCC-CCCH
Q psy2902 893 PGDLFCHVTIETPV-QLTE 910 (945)
Q Consensus 893 ~Gdl~v~~~i~~p~-~l~~ 910 (945)
-|.+|++|.+.+|. .++.
T Consensus 310 ~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 310 KGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred hcceeEEecccCcccccch
Confidence 79999999999994 4666
|
|
| >PRK14298 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-21 Score=217.01 Aligned_cols=152 Identities=25% Similarity=0.456 Sum_probs=128.5
Q ss_pred CCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccccccC---------cCcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNGAKKG---------TSPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G~~~~---------~~~~~C~~C~ 740 (945)
.++.+...++.++|++.+.+.....+......|. .+|+.|+|+|.... ..+++|+.|+
T Consensus 112 ~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 191 (377)
T PRK14298 112 RRGSDLRYDLYITLEEAAFGVRKDIDVPRAERCSTCSGTGAKPGTSPKRCPTCGGTGQVTTTRSTPLGQFVTTTTCSTCH 191 (377)
T ss_pred CCCCCEEEEEEEEHHHhhCCeEEEEEEEeeccCCCCCCCcccCCCCCCcCCCCCCccEEEEEEecCceeEEEEEeCCCCC
Confidence 4567889999999999999999888888877663 78999999997643 2467999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|++ +..+|+.|+|+|.+ .+|+.|+|.
T Consensus 192 G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~v~~h~~F~R~ 263 (377)
T PRK14298 192 GRGQV--------IESPCPVCSGTGKVRKTRKITVNVPAGADSGLRLKLSGEGEAGSPGAPSGDLYIVLHVKEHDYFERV 263 (377)
T ss_pred CCCcc--------cCCCCCCCCCccEEEEEEEEEecCCCCCCCCCEEEEecccCCCCCCCCCcCEEEEEEEecCCCeEEE
Confidence 99998 78899999999972 679999999
Q ss_pred CCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCC
Q psy2902 777 GIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDD 837 (945)
Q Consensus 777 G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~d 837 (945)
|.++..+ . ..++|+||+|+++|++++++|+|+|..+++.+|||||+|+|.+|+.|++++.+
T Consensus 264 G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~lri~g~G~p~~~~~~~GDL~V~~~V~~P~~ls~~~~~ 343 (377)
T PRK14298 264 GDDIISEIPISFTQAALGADIMVPTLYGKVKMNIPPGTQTHSVFRLKDKGMPRLHGHGKGDQLVKVIVKTPTKLTQEQKE 343 (377)
T ss_pred cCcEEEEEEeCHHHHhCCCeEEEecCCCCEEEEeCCCcccCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 9555444 2 22579999999999999999999997665568999999999999999999988
Q ss_pred ceeEE
Q psy2902 838 LHYEM 842 (945)
Q Consensus 838 l~~~~ 842 (945)
++.++
T Consensus 344 ll~~l 348 (377)
T PRK14298 344 LLREF 348 (377)
T ss_pred HHHHH
Confidence 77654
|
|
| >TIGR01174 ftsA cell division protein FtsA | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-19 Score=200.61 Aligned_cols=195 Identities=21% Similarity=0.339 Sum_probs=152.5
Q ss_pred HHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCC
Q psy2902 217 DAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF 296 (945)
Q Consensus 217 ~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~ 296 (945)
....+.+.+|++.|||++..++.||.|+|++|.... .....++|+|+|+||+|++++.- +.+.. .....
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~--~~~~~~~vvDiG~gtt~i~i~~~------g~~~~---~~~i~ 225 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED--EKELGVCLIDIGGGTTDIAVYTG------GSIRY---TKVIP 225 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc--hhcCCEEEEEeCCCcEEEEEEEC------CEEEE---Eeeec
Confidence 455678889999999999999999999999986543 34567999999999999999964 22211 22356
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc------ceeeeeceeeccCCCCeEEEEEE
Q psy2902 297 LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK------QTEINEPYIAMSNGAPVHLNLKI 370 (945)
Q Consensus 297 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~------~~~i~i~~~~~~~~~~~~~~~~i 370 (945)
+||++||+.+.+.+. ...++||++|+.++... ...+.++... .+....+
T Consensus 226 ~GG~~it~~i~~~l~-------------------~~~~~AE~lK~~~~~~~~~~~~~~~~i~~~~~~------~~~~~~i 280 (371)
T TIGR01174 226 IGGNHITKDIAKALR-------------------TPLEEAERIKIKYGCASIPLEGPDENIEIPSVG------ERPPRSL 280 (371)
T ss_pred chHHHHHHHHHHHhC-------------------CCHHHHHHHHHHeeEecccCCCCCCEEEeccCC------CCCCeEE
Confidence 899999998875431 12668999999998642 3344444332 1456899
Q ss_pred cHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCCc-EEEecCccccHHHHHHHHHHhCCCCCC------------CCC
Q psy2902 371 TRAKLELLVDELITRTIEPCR-IAIKDAGIKVSDIND-IILVGGMTRMPKVQEKVKEFFGKDPRR------------DIN 436 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~-~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~fg~~~~~------------~~~ 436 (945)
+|++|++++++.++++.+.+. +.|++++.. .+++. |+|+||+|++|.+++.+++.|+.++.. ..+
T Consensus 281 s~~~l~~ii~~~~~ei~~~i~~~~L~~~~~~-~~i~~gIvLtGG~S~ipgi~~~l~~~~~~~vr~~~P~~~~~~~~~~~~ 359 (371)
T TIGR01174 281 SRKELAEIIEARAEEILEIVKQKELRKSGFK-EELNGGIVLTGGGAQLEGIVELAEKVFDNPVRIGLPQNIGGLTEDVND 359 (371)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-ccCCCEEEEeChHHcccCHHHHHHHHhCCCeEEECCCccCCchhhcCC
Confidence 999999999999999999997 999998776 56777 999999999999999999999876531 126
Q ss_pred CCchhhhhHHHh
Q psy2902 437 PDEAVAVGAAIQ 448 (945)
Q Consensus 437 p~~avA~GAa~~ 448 (945)
|..++|.|.++|
T Consensus 360 p~~~~a~Gl~~~ 371 (371)
T TIGR01174 360 PEYSTAVGLLLY 371 (371)
T ss_pred cHHHHHHHHHhC
Confidence 777888888764
|
This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70. |
| >PRK14288 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-21 Score=213.29 Aligned_cols=173 Identities=17% Similarity=0.334 Sum_probs=135.6
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc------------cccCCCCCccccc
Q psy2902 661 NFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS------------WDICKSCYGNGAK 728 (945)
Q Consensus 661 ~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~------------~~~C~~C~G~G~~ 728 (945)
+|.++|+++||+...+.+.....++.+....+.++|++.+.+.....+......| ..+|+.|+|+|..
T Consensus 89 ~~~~~F~~~fg~g~~~~~~~~~~~g~di~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~ 168 (369)
T PRK14288 89 DLGSFFEDAFGFGARGSKRQKSSIAPDYLQTIELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALETCKQCNGQGQV 168 (369)
T ss_pred hHHHHHHhhcCCCCcccCcCCCCCCCCeeEeccccHHHHhCCeEEEEEEEeeccCCCCCCcccCCCCCcCCCCCCCCcEE
Confidence 5677888888743212111223467788999999999999998877777766554 4789999999976
Q ss_pred cC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE------------------------------------
Q psy2902 729 KG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------------ 767 (945)
Q Consensus 729 ~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------------ 767 (945)
.. ...++|+.|+|+|++ +..+|+.|+|.|++
T Consensus 169 ~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~IP~G~~~G~~i~l~g~G~~~~~~~~GD 240 (369)
T PRK14288 169 FMRQGFMSFAQTCGACQGKGKI--------IKTPCQACKGKTYILKDEEIDAIIPEGIDDQNRMVLKNKGNEYEKGKRGD 240 (369)
T ss_pred EEEeceEEEEEecCCCCCCceE--------ccccCccCCCcceEEEEEEEEEecCCCCCCCCEEEEccCccCCCCCCCCC
Confidence 42 246699999999998 78889999999862
Q ss_pred -------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEE
Q psy2902 768 -------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLY 820 (945)
Q Consensus 768 -------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~ 820 (945)
.+|+-|+|.|..+..+ .+.++|+||+|+++|++++++|+|+|.+.+..+||||
T Consensus 241 L~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAllG~~i~v~tLdG~~l~i~i~~~~~~g~~~~i~g~G~p~~~~~~~GDL~ 320 (369)
T PRK14288 241 LYLEARVKEDEHFKREGCDLFIEAPVFFTTIALGHTIKVPSLKGDELELKIPRNARDRQTFAFRNEGVKHPESSYRGSLI 320 (369)
T ss_pred EEEEEEEEECCCcEEeCCEEEEEEecCHHHHhcCCEEEeecCCCCEEEEEeCCCCCCCcEEEEcCCCCCCCCCCCCCCEE
Confidence 6799999999555444 2346899999999999999999999976655679999
Q ss_pred EEEEEecCCcccccCCCceeE
Q psy2902 821 IEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 821 i~i~v~~~~~~~r~g~dl~~~ 841 (945)
|+|+|..|+.|+.++..++.+
T Consensus 321 v~~~v~~P~~ls~~q~~~l~~ 341 (369)
T PRK14288 321 VELQVIYPKSLNKEQQELLEK 341 (369)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 999999999988877655443
|
|
| >PRK14282 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-21 Score=212.11 Aligned_cols=171 Identities=23% Similarity=0.449 Sum_probs=138.7
Q ss_pred ccccccccccCCC-CCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCcccccc
Q psy2902 664 DAFGDIFGDIFGS-NRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKK 729 (945)
Q Consensus 664 d~f~~~F~~~~g~-~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~ 729 (945)
|+|++||+++.++ .......++.+....+.++|++.+.+.....+......| ..+|+.|+|+|...
T Consensus 103 d~f~~~fgg~~~~~~~~~~~~~g~di~~~l~~slee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~ 182 (369)
T PRK14282 103 DIFDIFFGERRTQEEQREYARRGEDIRYEIEVTLSDLINGAEIPVEYDRYETCPHCGGTGVEPGSGYVTCPKCHGTGRIR 182 (369)
T ss_pred hhhhHhhcccCCcccccCCCCCCCCeEEEEEEEHHHhcCCeEEEEEeeecccCCCCCccCCCCCCCCcCCCCCCCcCEEE
Confidence 7888888853222 122233567889999999999999999988888877665 36899999999864
Q ss_pred Cc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE---------------------------------
Q psy2902 730 GT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------- 767 (945)
Q Consensus 730 ~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------- 767 (945)
.. ++++|+.|+|+|++ +...|+.|+|+|++
T Consensus 183 ~~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~ 254 (369)
T PRK14282 183 EERRSFFGVFVSERTCERCGGTGKI--------PGEYCHECGGSGRIRRRVRTTVKIPAGVEDGTVLRITGGGNAGYYGG 254 (369)
T ss_pred EEEEccCcceEEEEECCCCCCccee--------CCCCCCCCCCceeEEEEEEEEEEeCCCCCCCCEEEEecccCCCCCCC
Confidence 32 46799999999998 78899999999962
Q ss_pred -----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCC
Q psy2902 768 -----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSN 816 (945)
Q Consensus 768 -----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~ 816 (945)
.+|+.|+|.|..+..+ .++++|+||+|+++|++++|+|+|+|..+.+.+
T Consensus 255 ~~GDl~i~i~v~~h~~F~r~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~~i~v~Ip~g~~~g~~iri~GkG~p~~~~~~~ 334 (369)
T PRK14282 255 PYGDLYVIVRVRPDPRFKRSGSDLIYDVTIDYLQAILGTTVEVPLPEGGTTMLKIPPGTQPETVFRLKGKGLPNMRYGRR 334 (369)
T ss_pred CCCCEEEEEEEecCCcEEEecCCEEEEEEeCHHHHhCCCEEEEeCCCCcEEEEEeCCCcCCCCEEEECCCCCCCCCCCCC
Confidence 6799999999544443 245689999999999999999999997655568
Q ss_pred ccEEEEEEEecCCcccccCCCceeEE
Q psy2902 817 GNLYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 817 Gdl~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
|||||+|+|.+|+.|++++.+|+.++
T Consensus 335 GDL~V~~~v~~P~~l~~~~~~ll~~l 360 (369)
T PRK14282 335 GDLIVNVHVEIPKRLSREERKLLKEL 360 (369)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHHH
Confidence 99999999999999999998887653
|
|
| >PRK14276 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-21 Score=213.49 Aligned_cols=151 Identities=21% Similarity=0.414 Sum_probs=124.7
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc---------CcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT---------SPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~---------~~~~C~~C~ 740 (945)
.++.+....+.++|++.+.+.....+......| ..+|+.|+|+|..... ++++|+.|+
T Consensus 117 ~~g~di~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 196 (380)
T PRK14276 117 RQGDDLQYRVNLDFEEAIFGKEKEVSYNREATCHTCNGSGAKPGTSPVTCGKCHGSGVITVDTQTPLGMMRRQVTCDVCH 196 (380)
T ss_pred CCCCCEEEEEEEEHHHhcCCeEEEEEeeccccCCCCcCcccCCCCCCccCCCCCCeeEEEEEEecCCceEEEEEECCCCC
Confidence 456788899999999999999888877776655 3789999999986432 367999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|++ +..+|+.|+|.|++ .+|+.|+|.
T Consensus 197 G~G~~--------~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~ 268 (380)
T PRK14276 197 GTGKE--------IKEPCQTCHGTGHEKQAHTVSVKIPAGVETGQQIRLQGQGEAGFNGGPYGDLYVVFRVEPSKKFERD 268 (380)
T ss_pred CCCcc--------ccCCCCCCCCceEEEEEEEEEEEeCCCccCCcEEEEeccccCCCCCCCCcCEEEEEEEEECcceeee
Confidence 99998 78899999999962 679999999
Q ss_pred CCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCC
Q psy2902 777 GIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDD 837 (945)
Q Consensus 777 G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~d 837 (945)
|..+... .+ .++|+||+|+++|++++++|+|+|..+++.+|||||+|+|..|..++.++..
T Consensus 269 G~DL~~~~~Isl~eAl~G~~~~v~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ 348 (380)
T PRK14276 269 GSTIYYTLPISFVQAALGDTVEVPTVHGDVELKIPAGTQTGKKFRLRGKGAPKLRGGGNGDQHVTVNIVTPTKLNDAQKE 348 (380)
T ss_pred cceEEEEEecCHHHHhCCCeEEEEcCCCcEEEEECCCCCCCCEEEECCCCcCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 9544443 22 3579999999999999999999997765668999999999999988877766
Q ss_pred ceeE
Q psy2902 838 LHYE 841 (945)
Q Consensus 838 l~~~ 841 (945)
++.+
T Consensus 349 ~l~~ 352 (380)
T PRK14276 349 ALKA 352 (380)
T ss_pred HHHH
Confidence 5544
|
|
| >PRK14296 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=8e-21 Score=210.31 Aligned_cols=151 Identities=22% Similarity=0.362 Sum_probs=122.8
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc---------CcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT---------SPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~---------~~~~C~~C~ 740 (945)
.++.+...++.++|++.+.+.....+......| ..+|+.|+|+|..... .+++|+.|+
T Consensus 120 ~~g~di~~~l~ltlee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~ 199 (372)
T PRK14296 120 TKGQSVSLDIYLTFKELLFGVDKIIELDLLTNCSKCFGSGAESNSDIHICNNCHGTGEVLVQKNMGFFQFQQSAKCNVCN 199 (372)
T ss_pred CCCCCeEEEeeccHHHhhCCeeEEEEEeeeeccCCCCCCccCCCCCCccCCCCCCCceEEEEEeccceEEEEEecCCCcC
Confidence 356788899999999999999888888776655 3789999999986532 357999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|++ +...|+.|+|.|++ .+|+.|+|.
T Consensus 200 G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~v~v~~h~~F~R~ 271 (372)
T PRK14296 200 GAGKI--------IKNKCKNCKGKGKYLERKKIEVNIPKGIRPNQQIKLSQKGHASLNNGVNGDLIIDIYLKESKVFEII 271 (372)
T ss_pred Cccee--------ecccccCCCCceEEEEEEEEEEEECCCCCCCCEEEEeccccCCCCCCCCccEEEEEEEeCCCCEEEe
Confidence 99998 78899999999962 679999995
Q ss_pred -CCceEee---------------eee----EEEEeecCCCCCeEEEEcCCCCCCC-CCCCCccEEEEEEEecCCcccccC
Q psy2902 777 -GIGRIKR---------------NKT----LEVKIPAGIENNMRIRSTGNGEPGL-NGGSNGNLYIEIHIKPHKVFERDG 835 (945)
Q Consensus 777 -G~g~~~~---------------~~~----l~v~ip~G~~~g~~i~~~g~G~~~~-~~~~~Gdl~i~i~v~~~~~~~r~g 835 (945)
|..+..+ .++ ++|+||+|+++|++++++|+|||.. +++.+|||||+|+|..|+.++.++
T Consensus 272 ~G~DL~~~~~Isl~eAllG~~~~i~tldG~~~v~ip~~t~~g~~~ri~GkGmP~~~~~~~~GDL~V~~~V~~P~~Ls~~q 351 (372)
T PRK14296 272 NNNDILMTYNISYLDAILGNEIIIKTLDGDIKYKLPKSINSNELIIINNKGLYKSINKDKRGDLIIKVNIVVPKNLSKKE 351 (372)
T ss_pred CCCcEEEEEecCHHHHhCCCEEEeeCCCCCEEEEECCccCCCcEEEEcCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 7444433 333 5799999999999999999999944 345689999999999999888777
Q ss_pred CCceeE
Q psy2902 836 DDLHYE 841 (945)
Q Consensus 836 ~dl~~~ 841 (945)
..++.+
T Consensus 352 ~~~l~~ 357 (372)
T PRK14296 352 KELIEQ 357 (372)
T ss_pred HHHHHH
Confidence 665444
|
|
| >PRK14301 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.7e-21 Score=211.28 Aligned_cols=152 Identities=22% Similarity=0.461 Sum_probs=126.3
Q ss_pred CCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccccccC-----cCcccCCCCCCCce
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNGAKKG-----TSPISCFTCSGQGQ 744 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~ 744 (945)
.++.+....+.++|++.+.+.....+......|. ..|+.|+|+|.... +.+++|+.|+|+|+
T Consensus 115 ~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 194 (373)
T PRK14301 115 QAGSDLRYNLTVSFRQAAKGDEVTLRIPKNVTCDDCGGSGAAPGTSPETCRHCGGSGQVRQSQGFFQIAVPCPVCRGEGR 194 (373)
T ss_pred CCCCCEEEEEeccHHHHhCCceEEEEeeecccCCCCCCcccCCCCCCcccCCccCeeEEEEEeeeEEEEEeCCCCCceee
Confidence 4667889999999999999998888887776653 68999999998643 24789999999999
Q ss_pred EeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCCCce
Q psy2902 745 VRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNGIGR 780 (945)
Q Consensus 745 ~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G~g~ 780 (945)
+ +...|+.|+|.|++ .+|+-|+|.|..+
T Consensus 195 ~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDLiv~i~v~~h~~f~r~G~DL 266 (373)
T PRK14301 195 V--------ITHPCPKCKGSGIVQQTRELKVRIPAGVDTGSRLRLRGEGEPGVHGGPPGDLYVVITVEDDKIFQRQGQDL 266 (373)
T ss_pred e--------cCCCCCCCCCCceeccceEEEEEeCCCCcCCCEEEEeccccCCCCCCCCcCEEEEEEEEECCCceeecCcE
Confidence 8 78899999999972 6788999999554
Q ss_pred Eee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeE
Q psy2902 781 IKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 781 ~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
..+ . ..++|+||+|+++|++++|+|+|+|..+++.+|||||+|+|..|+.++.++.+++.+
T Consensus 267 ~~~~~Isl~eAl~G~~~~v~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~I~~~V~~P~~l~~~q~~~l~~ 346 (373)
T PRK14301 267 VVTQEISFVQAALGDRIEVPTLDDPVTLDIPKGTQSGEVFRLRGKGLPYLGSSQKGDLLVEVSVVTPTKLTKRQEELLRE 346 (373)
T ss_pred EEEEEecHHHHhCCCeEEEecCCccEEEEECCCcCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 443 2 236899999999999999999999977666689999999999999998887766554
Q ss_pred E
Q psy2902 842 M 842 (945)
Q Consensus 842 ~ 842 (945)
+
T Consensus 347 l 347 (373)
T PRK14301 347 F 347 (373)
T ss_pred H
Confidence 3
|
|
| >PRK10767 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-20 Score=209.60 Aligned_cols=174 Identities=26% Similarity=0.519 Sum_probs=141.5
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G 726 (945)
+.|+|+|+.||++.++... +...++.+....+.++|++.|.+............|. ..|+.|+|+|
T Consensus 91 ~~f~~~f~~~fgg~~~~~~-~~~~~g~di~~~l~vsLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 169 (371)
T PRK10767 91 DIFGDIFGDIFGGGRGGGR-QRARRGADLRYNMEITLEEAVRGVTKEIRIPTLVTCDTCHGSGAKPGTSPKTCPTCHGAG 169 (371)
T ss_pred cchhhhhhhhccCCccccC-CCCCCCCCeEEEEEeehHHhhCCeeEEEeeeecccCCCCCCcccCCCCCCccCCCCCCee
Confidence 3477889999986432222 2345678899999999999999998888887777653 5899999999
Q ss_pred cccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
.... +.+++|+.|+|+|+. +..+|+.|+|+|++
T Consensus 170 ~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 241 (371)
T PRK10767 170 QVRMQQGFFTVQQTCPTCHGRGKI--------IKDPCKKCHGQGRVEKEKTLSVKIPAGVDTGDRIRLSGEGEAGERGGP 241 (371)
T ss_pred EEEEeeceEEEEEeCCCCCCceeE--------CCCCCCCCCCCceEeeeeeEEEecCCCCCCCcEEEEecCccCCCCCCC
Confidence 7642 246799999999998 78899999999962
Q ss_pred ----------eecCCcccCCCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCcc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGN 818 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gd 818 (945)
.+|+.|+|.|.++..+ .+ +++|+||+|+++|++++++|+|+|..+++.+||
T Consensus 242 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GD 321 (371)
T PRK10767 242 AGDLYVQIHVKEHPIFERDGNDLYCEVPISFTTAALGGEIEVPTLDGRVKLKIPEGTQTGKLFRLRGKGVKSVRSGARGD 321 (371)
T ss_pred CcCEEEEEEEeeCCCEEEecCCEEEEEEeCHHHHhCCCeEEEecCCCcEEEEeCCCCCCCCEEEECCCCcCCCCCCCCCC
Confidence 6789999999555444 22 468999999999999999999999776667899
Q ss_pred EEEEEEEecCCcccccCCCceeEE
Q psy2902 819 LYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 819 l~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
|||+|+|.+|+.|++++.+++.++
T Consensus 322 L~v~~~v~~P~~l~~~~~~ll~~l 345 (371)
T PRK10767 322 LYCQVVVETPVNLTKRQKELLEEF 345 (371)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHH
Confidence 999999999999999998887664
|
|
| >PRK09472 ftsA cell division protein FtsA; Reviewed | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=198.26 Aligned_cols=195 Identities=19% Similarity=0.258 Sum_probs=146.2
Q ss_pred HHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCch
Q psy2902 220 RQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGG 299 (945)
Q Consensus 220 r~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG 299 (945)
.+.+.+|++.|||++..++.||.|+|++++... ..+..++|+|+||||||++++.- +.+. ......+||
T Consensus 168 ~~~~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~--e~~~gv~vvDiGggtTdisv~~~------G~l~---~~~~i~~GG 236 (420)
T PRK09472 168 AKNIVKAVERCGLKVDQLIFAGLASSYAVLTED--ERELGVCVVDIGGGTMDIAVYTG------GALR---HTKVIPYAG 236 (420)
T ss_pred HHHHHHHHHHcCCeEeeEEehhhHHHHHhcChh--hhhcCeEEEEeCCCceEEEEEEC------CEEE---EEeeeechH
Confidence 344467999999999999999999999986554 44677999999999999999963 2221 112245699
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCC------cceeeeeceeeccCCCCeEEEEEEcHH
Q psy2902 300 EDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSS------KQTEINEPYIAMSNGAPVHLNLKITRA 373 (945)
Q Consensus 300 ~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~------~~~~i~i~~~~~~~~~~~~~~~~itr~ 373 (945)
+++++.|...+. .. ..+||++|..+... ....+.++.... .....+++.
T Consensus 237 ~~it~dIa~~l~--------i~-----------~~~AE~lK~~~g~~~~~~~~~~~~i~v~~~~~------~~~~~i~~~ 291 (420)
T PRK09472 237 NVVTSDIAYAFG--------TP-----------PSDAEAIKVRHGCALGSIVGKDESVEVPSVGG------RPPRSLQRQ 291 (420)
T ss_pred HHHHHHHHHHhC--------cC-----------HHHHHHHHHhcceeccccCCCCceeEecCCCC------CCCeEEcHH
Confidence 999988875442 11 56899999776542 223444443211 123588999
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC------------C
Q psy2902 374 KLELLVDELITRTIEPCRI-------AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR------------D 434 (945)
Q Consensus 374 ~~e~~~~~~i~~i~~~i~~-------~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~------------~ 434 (945)
+|.+++.+.++++.+.+.+ .|..++.....++.|+|+||+|++|.+++++++.|+.++.. .
T Consensus 292 ~l~~ii~~r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtGG~a~lpgi~e~~~~~f~~~vri~~P~~~~g~~~~~ 371 (420)
T PRK09472 292 TLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYA 371 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeCchhccccHHHHHHHHhCCCeEEeCCcccCCChhhc
Confidence 9999999977777777764 45666776667899999999999999999999999866532 2
Q ss_pred CCCCchhhhhHHHhhh
Q psy2902 435 INPDEAVAVGAAIQGS 450 (945)
Q Consensus 435 ~~p~~avA~GAa~~a~ 450 (945)
.+|..++|.|+++|+.
T Consensus 372 ~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 372 QEPYYSTAVGLLHYGK 387 (420)
T ss_pred CCcHHHHHHHHHHHhh
Confidence 4799999999999986
|
|
| >PRK14279 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-20 Score=209.56 Aligned_cols=172 Identities=20% Similarity=0.421 Sum_probs=137.0
Q ss_pred cccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCcccc
Q psy2902 661 NFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGA 727 (945)
Q Consensus 661 ~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~ 727 (945)
+|.|+|++||++..++.+.....++.+....+.++|++.+.+.....+......| ..+|+.|+|+|.
T Consensus 122 ~f~d~f~~~fg~~~~~~~~~~~~~g~di~~~l~ltLee~~~G~~~~v~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~ 201 (392)
T PRK14279 122 GIGDLFGGLFNRGGGSARPSRPRRGNDLETETTLDFVEAAKGVTMPLRLTSPAPCTTCHGSGARPGTSPKVCPTCNGSGV 201 (392)
T ss_pred chhhhhhhhhcCCCcccccCCCCCCCCeEEEEEEEHHHHhCCeEEEEeeeccccCCCCccccccCCCCCCCCCCCcceEE
Confidence 4778999999854322222233567889999999999999999888877776665 378999999998
Q ss_pred ccCc-----CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE-----------------------------------
Q psy2902 728 KKGT-----SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV----------------------------------- 767 (945)
Q Consensus 728 ~~~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~----------------------------------- 767 (945)
.... .+++|+.|+|+|++ +..+|+.|+|.|++
T Consensus 202 ~~~~~g~~~~~~~C~~C~G~G~~--------i~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~ 273 (392)
T PRK14279 202 ISRNQGAFGFSEPCTDCRGTGSI--------IEDPCEECKGTGVTTRTRTINVRIPPGVEDGQRIRLAGQGEAGLRGAPS 273 (392)
T ss_pred EEEEecceEEEEecCCCCceeEE--------eCCcCCCCCCCeEEEEeeeeEEEeCCCCCCCcEEEEeCCccCCCCCCCC
Confidence 6432 46899999999998 78899999999962
Q ss_pred ---------eecCCcccCCCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccE
Q psy2902 768 ---------IPHPCLDCNGIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNL 819 (945)
Q Consensus 768 ---------~~~~c~~c~G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl 819 (945)
.+|+.|+|.|..+..+ . .+++|+||+|+++|++++++|+|+|.. ++.+|||
T Consensus 274 GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~v~~ldg~i~v~Ip~g~~~g~~iri~g~G~p~~-~~~~GDL 352 (392)
T PRK14279 274 GDLYVTVHVRPDKVFGRDGDDLTVTVPVSFTELALGSTLSVPTLDGPVGVKVPAGTADGRILRVRGRGVPKR-SGGAGDL 352 (392)
T ss_pred CCEEEEEEEecCCcceeecCcEEEEEEccHHHHcCCceEEEEcCCceEEEEECCCCCCCCEEEECCCCCCCC-CCCCCCE
Confidence 6789999999554443 2 236899999999999999999999964 3568999
Q ss_pred EEEEEEecCCcccccCCCceeE
Q psy2902 820 YIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 820 ~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
||+|+|..|+.++.++..++..
T Consensus 353 ~I~~~v~~P~~Ls~~q~~~l~~ 374 (392)
T PRK14279 353 LVTVKVAVPPNLDGAAAEALEA 374 (392)
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 9999999999888777655544
|
|
| >KOG0715|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.6e-20 Score=197.08 Aligned_cols=234 Identities=33% Similarity=0.605 Sum_probs=192.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
.-|..||......+.+..++|..... .+.++|++|.+||++|++++|++.||.++..+..+
T Consensus 54 ~At~~EIK~Af~~LaKkyHPD~n~~~------------~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~~~~------- 114 (288)
T KOG0715|consen 54 NATLSEIKSAFRKLAKKYHPDVNKDK------------EASKKFKEISEAYEILSDEEKRQEYDVYGLEQHGE------- 114 (288)
T ss_pred CCCHHHHHHHHHHHHHhhCCCCCCCc------------chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhcccc-------
Confidence 35788999999999999999985533 45678999999999999999999999998776111
Q ss_pred ccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCccc
Q psy2902 656 SAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPIS 735 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~ 735 (945)
.+++..+.|..+|++ . ......+.+.++.+.+.++++..|..+...+.....|..|.|.|...+.....
T Consensus 115 --~~g~~~~~~~~~~~~----~-----~~~~~~~~~~~~d~~~~f~~A~~g~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 183 (288)
T KOG0715|consen 115 --FGGNPFDVFLEFFGG----K-----MNKRVPDKDQYYDLSLDFKEAVRGSKKRISFNVLSDCETCFGSGAEEGAKRES 183 (288)
T ss_pred --ccCCccchHHHhhcc----c-----ccccccCcccccccccCHHHHhhccccceEEEeecccccccCcCccccccccc
Confidence 111344566666654 0 01112345677779999999999998999999999999999999999999999
Q ss_pred CCCCCCCceEeE-eeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 736 CFTCSGQGQVRM-QQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 736 C~~C~G~G~~~~-~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
|..|.|+|.... ....+... +|..|.|.|.+....|-.|.|.|.+...+.+.|.+|+|..++.+|++.+.|..
T Consensus 184 ~~~~~~~~~~~~~~~~~f~~~-~~~~c~~~~~~~~~~c~~~~g~~~v~~~k~i~i~~~~g~~~~~~l~~~~~~~~----- 257 (288)
T KOG0715|consen 184 CKTCSGRGLVSNPKEDPFILY-TCSYCLGRGLVLRDNCQACSGAGQVRRAKDIMIVLPAGVRSADTLRFAGHGND----- 257 (288)
T ss_pred chhhhCcccccccccCCccee-ecccccccceeccchHHHhhcchhhhhheeEEeecCcccccccEEEEecCCcc-----
Confidence 999999996532 22333334 99999999999999999999999888889999999999999999999986653
Q ss_pred CCccEEEEEEEecCCcccccCCCceeEEeeCHHH
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYEMPISFST 848 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~e 848 (945)
||++.+.|.+++.|+|+|.|++++..|++.|
T Consensus 258 ---~l~v~~~v~~~~~~~r~~~~i~~~~~i~~~~ 288 (288)
T KOG0715|consen 258 ---DLFVRLIVAKSPSFRREGKDILYDAIISFTQ 288 (288)
T ss_pred ---eEEEEEEeccCcccccccCcccccccccccC
Confidence 9999999999999999999999999998753
|
|
| >PRK14277 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.3e-20 Score=206.11 Aligned_cols=175 Identities=25% Similarity=0.457 Sum_probs=138.2
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCcc
Q psy2902 659 ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGN 725 (945)
Q Consensus 659 ~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~ 725 (945)
.+.|.++|+.+|++... .......++.+....+.++|++.|.+.....+......| ..+|+.|+|+
T Consensus 103 ~d~f~~~F~~~fgg~~~-~~~~~~~kg~di~~~l~vtLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~ 181 (386)
T PRK14277 103 GDIFEDIFGDFFGTGRR-RAETGPQKGADIRYDLELTFEEAAFGTEKEIEVERFEKCDVCKGSGAKPGSKPVTCPVCHGT 181 (386)
T ss_pred hHHHHHhhcccccCCCc-CCCCCCCCCCCEEEEEEEEHHHHhCCeEEEEEEEeeccCCCCCCCCcCCCCCCccCCCCCCE
Confidence 34577888888875322 211223467789999999999999999988888877665 3789999999
Q ss_pred ccccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE-----------------------------
Q psy2902 726 GAKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV----------------------------- 767 (945)
Q Consensus 726 G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~----------------------------- 767 (945)
|..... +.++|+.|+|+|.+ +..+|+.|+|+|++
T Consensus 182 G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~ 253 (386)
T PRK14277 182 GQVRTRQNTPFGRIVNIRTCDRCHGEGKI--------ITDPCNKCGGTGRIRRRRKIKVNIPAGIDDGQMITLRGEGEPG 253 (386)
T ss_pred EEEEEEEeccCceEEEEEECCCCCcceee--------ccCCCCCCCCCcEEeeeeEEEEecCCCccCCcEEEEccccccC
Confidence 976422 35799999999998 78899999999972
Q ss_pred ---------------eecCCcccCCCceEee---------------eee----EEEEeecCCCCCeEEEEcCCCCCCCCC
Q psy2902 768 ---------------IPHPCLDCNGIGRIKR---------------NKT----LEVKIPAGIENNMRIRSTGNGEPGLNG 813 (945)
Q Consensus 768 ---------------~~~~c~~c~G~g~~~~---------------~~~----l~v~ip~G~~~g~~i~~~g~G~~~~~~ 813 (945)
.+|+.|+|.|..+..+ .++ ++|.||+|+++|++++++|+|+|..++
T Consensus 254 ~~~~~~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~ri~g~G~p~~~~ 333 (386)
T PRK14277 254 IKGGPNGDLYIVIKVKPHPLFKREGYNVYLEMPITFTDAALGGEIEIPTLDGKVKFTIPEGTQTGTKFRLRGKGIPHLRG 333 (386)
T ss_pred CCCCCCccEEEEEEEecCCCeEEecCCEEEEEEcCHHHHhCCCEEEEEcCCCCEEEEECCCCCCCCEEEECCCCCCCCCC
Confidence 6789999999544443 323 589999999999999999999997665
Q ss_pred CCCccEEEEEEEecCCcccccCCCceeEE
Q psy2902 814 GSNGNLYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 814 ~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
+.+|||||+|+|..|..++.++.+++.++
T Consensus 334 ~~~GDL~v~~~V~~P~~Ls~~qk~~l~~l 362 (386)
T PRK14277 334 RGRGDQIVKVYIEVPKKLTEKQKELLREF 362 (386)
T ss_pred CCCCCEEEEEEEEeCCCCCHHHHHHHHHH
Confidence 56899999999999998887776665443
|
|
| >PRK14280 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.4e-20 Score=203.48 Aligned_cols=152 Identities=23% Similarity=0.461 Sum_probs=125.2
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccC---------cCcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKG---------TSPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~---------~~~~~C~~C~ 740 (945)
.++.+...++.++|++.|.+.....+....+.| ..+|+.|+|+|.... ..+++|+.|+
T Consensus 114 ~kg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 193 (376)
T PRK14280 114 RQGADLQYTMTLTFEEAVFGKEKEIEIPKEETCDTCHGSGAKPGTSKETCSHCGGSGQVSVEQNTPFGRVVNRQTCPHCN 193 (376)
T ss_pred ccccCEEEEEEEEHHHHhCCceeEEEEeeeccCCCCCCcccCCCCCCccCCCCCCEEEEEEEeecCCceEEEEEEcCCCC
Confidence 356788899999999999999888888777665 368999999997542 2467999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|++ +..+|+.|+|+|++ .+|+.|+|.
T Consensus 194 G~G~~--------~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~i~l~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~ 265 (376)
T PRK14280 194 GTGQE--------IKEKCPTCHGKGKVRKRKKINVKIPAGVDNGQQIRVSGEGEPGVNGGPAGDLYVVFRVRPHEFFERD 265 (376)
T ss_pred CCCce--------ecCCCCCCCCceEEEEEEEEEEEeCCCCcCCcEEEEcccccCCCCCCCCcCEEEEEEEecCCCeEEe
Confidence 99998 78899999999972 679999999
Q ss_pred CCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCC
Q psy2902 777 GIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDD 837 (945)
Q Consensus 777 G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~d 837 (945)
|..+..+ .+ .++|+||+|+++|++++++|+|+|...+..+|||||+|+|..|..++.++..
T Consensus 266 G~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~v~~P~~Ls~~q~~ 345 (376)
T PRK14280 266 GDDIYCEMPLTFAQAALGDEIEVPTLHGKVKLKIPAGTQTGTQFRLKGKGVPNVRGYGQGDQYVVVRVVTPTKLTDRQKE 345 (376)
T ss_pred cCCEEEEEecCHHHHhCCCEEEEecCCceEEEEECCCCCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHH
Confidence 9544443 22 3579999999999999999999997665578999999999999988877766
Q ss_pred ceeEE
Q psy2902 838 LHYEM 842 (945)
Q Consensus 838 l~~~~ 842 (945)
++..+
T Consensus 346 ~l~~l 350 (376)
T PRK14280 346 LLREF 350 (376)
T ss_pred HHHHH
Confidence 55443
|
|
| >PRK14300 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-20 Score=202.25 Aligned_cols=175 Identities=25% Similarity=0.461 Sum_probs=138.6
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
..|.++|+++|++...........++.+....+.++|++.+.+.....+......| ..+|+.|+|+|
T Consensus 93 ~~f~~~f~~~~gg~~~~~~~~~~~~g~di~~~l~~sLee~~~G~~k~i~~~r~~~C~~C~G~g~~~~~~~~~C~~C~G~G 172 (372)
T PRK14300 93 DIFGDFFSDFMGGSRRSRPTSSKVRGSDLKYNLTINLEEAFHGIEKNISFSSEVKCDTCHGSGSEKGETVTTCDACSGVG 172 (372)
T ss_pred hhHHHHHHhhcCCCCCCCCCcCCCCCCCeeEEEEEEHHHHhCCceEEEEeeeccccCCCCCcccCCCCCCccCCCccCeE
Confidence 45778888888753211111122456789999999999999999888888777665 37899999999
Q ss_pred cccCc-----CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKGT-----SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
..... ...+|+.|+|.|.+ +..+|+.|+|+|++
T Consensus 173 ~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G~~~~~~~~ 244 (372)
T PRK14300 173 ATRMQQGFFTIEQACHKCQGNGQI--------IKNPCKKCHGMGRYHKQRNLSVNIPAGVENGTRIRHTGEGEAGIRGGN 244 (372)
T ss_pred EEEEeeceEEEEEeCCCCCccceE--------eCCCCCCCCCceEEEeeEEEEEEECCCCCCCcEEEEeccccCCCCCCC
Confidence 86432 46799999999998 78899999999972
Q ss_pred ----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNG 817 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~G 817 (945)
.+|+-|+|.|..+..+ .+.++|+||+|+++|++++++|+|+|.+++..+|
T Consensus 245 ~GDL~v~i~v~~h~~f~R~G~Dl~~~~~Isl~~Al~G~~~~i~~ldg~~i~v~Ip~g~~~g~~iri~g~G~p~~~~~~~G 324 (372)
T PRK14300 245 SGDLYVDIAIKPHDIYKVDGANLHCKLPISFVNAALGGEIEVPVIEGGKVNLTIPAGTQNGDQLRLRSKGMSKMRSTIRG 324 (372)
T ss_pred CCCEEEEEEECCCCCeEEecCCEEEEEecCHHHHhCCCEEEEecCCCCEEEEEECCccCCCcEEEECCCCCCCCCCCCCC
Confidence 5788999999544443 2457899999999999999999999976656789
Q ss_pred cEEEEEEEecCCcccccCCCceeEE
Q psy2902 818 NLYIEIHIKPHKVFERDGDDLHYEM 842 (945)
Q Consensus 818 dl~i~i~v~~~~~~~r~g~dl~~~~ 842 (945)
||||+|+|.+|..|+.++..++..+
T Consensus 325 DL~V~~~v~~P~~ls~~qk~~l~~l 349 (372)
T PRK14300 325 DMLTHIHVEVPKNLSKRQRELLEEF 349 (372)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHH
Confidence 9999999999999888776555443
|
|
| >PRK14286 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1e-19 Score=201.88 Aligned_cols=174 Identities=26% Similarity=0.403 Sum_probs=135.1
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G 726 (945)
+-|+++|+.-+++..+++......++.+....+.++|++.|.+.....+......|. .+|+.|+|+|
T Consensus 98 d~f~~ffgg~~~~~~~~~~~~~~~~g~di~~~l~vtLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 177 (372)
T PRK14286 98 DIFGDFFGGGRGGGSGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKGSSPTTCPDCGGSG 177 (372)
T ss_pred hHHHHhhCCCccCCCcccccCCCCCCCCeeEEEEEEHHHHhCCeeEEEEeeccccCCCCcCCCcCCCCCCccCCCCcCeE
Confidence 446666764332211111112234678899999999999999999888888777653 7899999999
Q ss_pred cccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
.... ...++|+.|+|+|++ +..+|+.|+|+|.+
T Consensus 178 ~v~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~ 249 (372)
T PRK14286 178 QIRRTQGFFSVATTCPTCRGKGTV--------ISNPCKTCGGQGLQEKRRTINIKIPPGVETGSRLKVSGEGEAGPNGGP 249 (372)
T ss_pred EEEEEeceEEEEEeCCCCCceeeE--------ecccCCCCCCCcEEecceEEEEEECCCCCCCCEEEECCccccCCCCCC
Confidence 7643 256799999999998 78899999999972
Q ss_pred ----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNG 817 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~G 817 (945)
.+|+.|+|.|.++... .+.++|+||+|+++|++++++|+|+|..+++.+|
T Consensus 250 ~GDL~i~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~i~tldG~~i~v~ip~g~~~g~~~ri~G~G~P~~~~~~~G 329 (372)
T PRK14286 250 HGDLYVVTHIKKHELFERQGNDLILVRKISLAQAILGAEIEVPTIDGKKAKMKIPEGTESGQVFRLKGHGMPYLGAYGKG 329 (372)
T ss_pred CceEEEEEEEccCCCEEEecCCEEEEEEECHHHHhCCCEEEEeCCCCCEEEEEeCCccCCCcEEEECCCCCCCCCCCCCC
Confidence 6789999999554443 2346899999999999999999999977656789
Q ss_pred cEEEEEEEecCCcccccCCCceeE
Q psy2902 818 NLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 818 dl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
||||+|+|..|+.++.++.+++..
T Consensus 330 DL~V~~~V~~P~~Ls~~qk~~l~~ 353 (372)
T PRK14286 330 DQHVIVKIEIPKKITRRQRELIEE 353 (372)
T ss_pred cEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999888887666544
|
|
| >PRK14284 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.8e-19 Score=201.54 Aligned_cols=152 Identities=23% Similarity=0.501 Sum_probs=126.9
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccC-----cCcccCCCCCCCce
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKG-----TSPISCFTCSGQGQ 744 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~ 744 (945)
.++.+...++.++|++.+.+.....+......| ..+|+.|+|+|.... ...++|+.|+|.|+
T Consensus 129 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~v~~~~G~~~~~~~C~~C~G~G~ 208 (391)
T PRK14284 129 RQGASKKVHITLSFEEAAKGVEKELLVSGYKSCDACSGSGANSSQGIKVCDRCKGSGQVVQSRGFFSMASTCPECGGEGR 208 (391)
T ss_pred CCCCCeEEEEEEEHHHHhCCeeEEEEEeeeccCCCCcccccCCCCCCeecCccCCeeEEEEEeceEEEEEECCCCCCCCc
Confidence 467788999999999999999888888777665 378999999998643 24679999999999
Q ss_pred EeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCCCce
Q psy2902 745 VRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNGIGR 780 (945)
Q Consensus 745 ~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G~g~ 780 (945)
+ +..+|+.|.|.|++ .+|+.|+|.|..+
T Consensus 209 ~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~v~~h~~F~R~G~DL 280 (391)
T PRK14284 209 V--------ITDPCSVCRGQGRIKDKRSVHVHIPAGVDSGMRLKMEGYGDAGQNGAPAGDLYVFIDVEPHPVFERRGDDL 280 (391)
T ss_pred c--------cCCcCCCCCCcceecceEEEEEEECCCCCCCCEEEEeccccCCCCCCCCCCEEEEEEEecCCCceeecCCE
Confidence 8 78899999999962 6799999999444
Q ss_pred Eee---------------e------eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCce
Q psy2902 781 IKR---------------N------KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLH 839 (945)
Q Consensus 781 ~~~---------------~------~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~ 839 (945)
... . ..++|+||+|+++|++++|+|+|+|..+++.+|||||+|+|..|+.++.++.+++
T Consensus 281 ~~~~~Isl~eAl~G~~~~v~tld~g~~i~v~Ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll 360 (391)
T PRK14284 281 ILELPIGFVDAALGMKKEIPTLLKEGTCRLTIPEGIQSGTILKVRGQGFPNVHGKGRGDLLVRISVETPQNLSEEQKELL 360 (391)
T ss_pred EEEEEecHHHHhCCCeEEEeecCCCcEEEEEECCccCCCeEEEECCCCCCCCCCCCCCcEEEEEEEECCCCCCHHHHHHH
Confidence 333 2 4568999999999999999999999776567899999999999999988887665
Q ss_pred eEE
Q psy2902 840 YEM 842 (945)
Q Consensus 840 ~~~ 842 (945)
..+
T Consensus 361 ~~l 363 (391)
T PRK14284 361 RQF 363 (391)
T ss_pred HHH
Confidence 544
|
|
| >PRK14287 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=3e-19 Score=197.95 Aligned_cols=152 Identities=22% Similarity=0.445 Sum_probs=125.5
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc---------CcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT---------SPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~---------~~~~C~~C~ 740 (945)
.++.+...++.++|++.+.+.....+......| ..+|+.|+|+|..... ..++|+.|.
T Consensus 109 ~~g~d~~~~l~vslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~G~~~~~~~C~~C~ 188 (371)
T PRK14287 109 RQGADLQYTMTLEFKEAVFGKETEIEIPREETCGTCHGSGAKPGTKPETCSHCGGSGQLNVEQNTPFGRVVNRRVCHHCE 188 (371)
T ss_pred CCCCCEEEEEEEEHHHhcCCeEEEEEEeeeccCCCCCCcccCCCCCCcccCCCCCEEEEEEEEecCCceEEEEEeCCCCC
Confidence 356788899999999999998887777776554 3789999999976432 367999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|.+ +..+|+.|+|.|.+ .+|+.|+|.
T Consensus 189 G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~G~G~~~~~~~~~GDL~v~i~v~~h~~F~R~ 260 (371)
T PRK14287 189 GTGKI--------IKQKCATCGGKGKVRKRKKINVKVPAGIDHGQQLRVSGQGEAGVNGGPPGDLYVVFNVKPHEFFERD 260 (371)
T ss_pred CCCcc--------ccccCCCCCCeeEEeeeEEEEEEECCcCCCCCEEEEccCCcCCCCCCCCccEEEEEEEecCCCEEEe
Confidence 99998 78889999999862 679999999
Q ss_pred CCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCC
Q psy2902 777 GIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDD 837 (945)
Q Consensus 777 G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~d 837 (945)
|..+..+ .. .++|+||+|+++|++++++|+|+|..+++.+|||||+|+|..|+.|++++..
T Consensus 261 G~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ 340 (371)
T PRK14287 261 GDDIYCEMPLTFPQVALGDEIEVPTLNGKVKLKIPAGTQTGTSFRLRGKGVPNVHGRGQGDQHVQVRVVTPKNLTEKEKE 340 (371)
T ss_pred cCCeEEEEeccHHHHhCCCEEEEEcCCCCEEEEECCCccCCcEEEEcCCCccCCCCCCCCCEEEEEEEEcCCCCCHHHHH
Confidence 9554443 22 3589999999999999999999997765668999999999999999988876
Q ss_pred ceeEE
Q psy2902 838 LHYEM 842 (945)
Q Consensus 838 l~~~~ 842 (945)
++.++
T Consensus 341 ll~~l 345 (371)
T PRK14287 341 LMREF 345 (371)
T ss_pred HHHHH
Confidence 65554
|
|
| >PRK14290 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-19 Score=196.48 Aligned_cols=152 Identities=24% Similarity=0.429 Sum_probs=128.0
Q ss_pred CCCCCCCccceeeccccccccccceeeEeecccc------------ccCCCCCccccccCc---------CcccCCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW------------DICKSCYGNGAKKGT---------SPISCFTCSG 741 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~------------~~C~~C~G~G~~~~~---------~~~~C~~C~G 741 (945)
+++.+....+.++|++.|.+............|. ..|+.|+|+|..... ..++|+.|+|
T Consensus 120 ~~~~di~~~l~lsLee~~~G~~~~i~~~r~~~C~~C~G~g~~~~~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G 199 (365)
T PRK14290 120 NIDLDIYTNLDISLEDAYYGTEKRIKYRRNAMCPDCSGTGAKNGKLITCPTCHGTGQQRIVRGQGFFRMVTVTTCRTCGG 199 (365)
T ss_pred CCCCCEEEEEEecHHHhcCCEEEEEEeeecccCCCCccccCCCCCCccCCCCCCcCEEEEEeccCeEEEEEEEeCCCCCC
Confidence 3467889999999999999988877777776653 689999999976432 2579999999
Q ss_pred CceEeEeeceeeeeecCCCCCCceEE------------------------------------------eecCCcccCCCc
Q psy2902 742 QGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------------------IPHPCLDCNGIG 779 (945)
Q Consensus 742 ~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------------------~~~~c~~c~G~g 779 (945)
.|.+ ...+|+.|+|+|.+ .+|+-|+|.|..
T Consensus 200 ~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~GDL~v~v~v~~h~~F~R~G~D 271 (365)
T PRK14290 200 RGRI--------PEEKCPRCNGTGTVVVNEDISVKIPKGATDNLRLRVKGKGQSYGGRTGDLYVVLRVNNDPNIQRINDD 271 (365)
T ss_pred ceeE--------ccCCCCCCCCceeEEEeeEEEEEECCCCCCCcEEEEccccCCCCCCCCCEEEEEEEcCCCCEEEecCC
Confidence 9998 78899999999972 678999999955
Q ss_pred eEee-------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCcee
Q psy2902 780 RIKR-------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHY 840 (945)
Q Consensus 780 ~~~~-------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~ 840 (945)
+..+ ..+++|+||+|+++|++++++|+|+|.+++..+|||||+|+|.+|+.|++++.+|+.
T Consensus 272 L~~~~~Isl~eAl~G~~~~I~~~~g~i~V~Ip~g~~~g~~iri~g~G~p~~~~~~~GDL~V~~~V~~P~~l~~~~~~ll~ 351 (365)
T PRK14290 272 LYVDQKINFPQAALGGEIEIKLFREKYNLKIPEGTQPGEVLKIKGAGMPHLNGHGSGDLLVRINVEVPKRLTSKQKELIR 351 (365)
T ss_pred EEEEEEeCHHHHhCCCEEEEEcCCceEEEEECCccCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 4443 234689999999999999999999997766678999999999999999999998887
Q ss_pred EE
Q psy2902 841 EM 842 (945)
Q Consensus 841 ~~ 842 (945)
++
T Consensus 352 ~~ 353 (365)
T PRK14290 352 EF 353 (365)
T ss_pred HH
Confidence 64
|
|
| >PRK14295 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-19 Score=196.07 Aligned_cols=170 Identities=21% Similarity=0.466 Sum_probs=136.7
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeecccc-------------ccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW-------------DICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~-------------~~C~~C~G~G 726 (945)
.+|.|+|++||++. +..... .++.+....+.++|++.+.+.....+......|. .+|+.|+|+|
T Consensus 117 ~~f~d~f~~~fg~~-~~~~~~--~~g~di~~~l~lsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 193 (389)
T PRK14295 117 GGLGDVFGGLFNRG-GRRTQP--RRGADVESEVTLSFTEAIDGATVPLRLTSQAPCPACSGTGAKNGTTPRVCPTCSGTG 193 (389)
T ss_pred cchhhhhcccccCC-CCCCCC--CCCCCEEEEEEEEHHHHhCCceEEEEeeccccCCCCcccccCCCCCCcCCCCCCCEe
Confidence 34778899989754 222222 3567888999999999999998888887776653 7899999999
Q ss_pred cccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE----------------------------------
Q psy2902 727 AKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV---------------------------------- 767 (945)
Q Consensus 727 ~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~---------------------------------- 767 (945)
.... ..+++|+.|+|+|++ +..+|+.|.|+|++
T Consensus 194 ~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~i~l~g~G~~~~~~~~ 265 (389)
T PRK14295 194 QVSRNSGGFSLSEPCPDCKGRGLI--------ADDPCLVCKGSGRAKSSRTMQVRIPAGVSDGQRIRLRGKGAPGERGGP 265 (389)
T ss_pred EEEEEecceEEEEecCCCcceeEE--------eccCCCCCCCCceEeeeeEEEEEeCCCCCCCCEEEEcccccCCCCCCC
Confidence 8643 246799999999998 78899999999962
Q ss_pred ----------eecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCc
Q psy2902 768 ----------IPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNG 817 (945)
Q Consensus 768 ----------~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~G 817 (945)
.+|+.|+|.|..+..+ .++++|+||+|+++|++++++|+|+|.. ++.+|
T Consensus 266 ~GDL~v~i~v~~h~~F~R~G~DL~~~~~Isl~eAl~G~~~~I~tldG~~~~v~ip~g~~~g~~iri~G~G~p~~-~~~~G 344 (389)
T PRK14295 266 AGDLYVVVHVDPHPVFGRSGDNLTVTVPVTFPEAALGAEVRVPTLGGPPVTVKLPPGTPNGRVLRVRGKGAVRK-DGTRG 344 (389)
T ss_pred CccEEEEEEEecCCCEEEecCCEEEEEeecHHHHhCCCeEEEECCCCCEEEEEECCccCCCcEEEECCCCcCCC-CCCCC
Confidence 6799999999544433 2357899999999999999999999964 35689
Q ss_pred cEEEEEEEecCCcccccCCCceeE
Q psy2902 818 NLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 818 dl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
||||+|+|..|..++.++..++.+
T Consensus 345 DL~i~~~v~~P~~Ls~~qk~~l~~ 368 (389)
T PRK14295 345 DLLVTVEVAVPKDLSGKAREALEA 368 (389)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999888777666554
|
|
| >PRK14294 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-19 Score=195.96 Aligned_cols=153 Identities=25% Similarity=0.433 Sum_probs=128.1
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc-----CcccCCCCCCCce
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT-----SPISCFTCSGQGQ 744 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~ 744 (945)
.++.+....+.++|++.+.+.....+......| ..+|+.|+|+|..... .+++|+.|+|+|+
T Consensus 115 ~~g~d~~~~l~lslee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~ 194 (366)
T PRK14294 115 RAGADLRYDLTLPFLEAAFGTEKEIRIQKLETCEECHGSGCEPGTSPTTCPQCGGSGQVTQSQGFFSIRTTCPRCRGMGK 194 (366)
T ss_pred CCCCCceEEEEeeHHHhcCCeEEEEEeeecccCCCCCCccccCCCCcccCCCcCCeEEEEEEeeeEEEEeeCCCCCCcCe
Confidence 467788999999999999999888888777655 3689999999986432 4789999999999
Q ss_pred EeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCCCce
Q psy2902 745 VRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNGIGR 780 (945)
Q Consensus 745 ~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G~g~ 780 (945)
. +...|+.|+|.|++ .+|+.|+|.|..+
T Consensus 195 ~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~v~i~v~~h~~F~R~G~DL 266 (366)
T PRK14294 195 V--------IVSPCKTCHGQGRVRVSKTVQVKIPAGVDTGSRLRLRGEGEAGVRGGPPGDLYVFLTVEPHEFFERDGNDV 266 (366)
T ss_pred e--------cCcCCCCCCCceEeecceeEEEecCCCCcCCcEEEEccCccCCCCCCCCCcEEEEEEEccCCcceecCCCE
Confidence 8 78899999999972 6789999999544
Q ss_pred Eee---------------eee----EEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeE
Q psy2902 781 IKR---------------NKT----LEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 781 ~~~---------------~~~----l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
..+ ..+ ++|+||+|+++|++++|+|+|+|.++++.+|||||+|+|.+|+.|++++.+++.+
T Consensus 267 ~~~~~Isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~iri~G~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~ll~~ 346 (366)
T PRK14294 267 HCKVPISFVQAALGAQIEVPTLEGERELKIPKGTQPGDIFRFKGKGIPSLRGGGRGDQIIEVEVKVPTRLTKKQEELLTE 346 (366)
T ss_pred EEEEEeCHHHHhCCCeEEEECCCCcEEEEECCCcCCCCEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 443 332 4899999999999999999999977655789999999999999999999887765
Q ss_pred Ee
Q psy2902 842 MP 843 (945)
Q Consensus 842 ~~ 843 (945)
+.
T Consensus 347 ~~ 348 (366)
T PRK14294 347 FA 348 (366)
T ss_pred HH
Confidence 43
|
|
| >PRK14278 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=8.7e-19 Score=194.82 Aligned_cols=152 Identities=24% Similarity=0.421 Sum_probs=125.4
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccCc---------CcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKGT---------SPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~~---------~~~~C~~C~ 740 (945)
.++.+....+.++|++.+.+.....+......| ..+|+.|+|+|..... ..++|+.|+
T Consensus 110 ~~g~d~~~~l~vtLee~~~G~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 189 (378)
T PRK14278 110 RPGSDSLLRMRLDLEECATGVTKQVTVDTAVLCDRCHGKGTAGDSKPVTCDTCGGRGEVQTVQRSFLGQVMTSRPCPTCR 189 (378)
T ss_pred CCCCCeEEEEEEEHHHhcCCeEEEEEEEeeccCCCCcCccCCCCCCceecCCccCceEEEEEEeccceeEEEEEECCCCC
Confidence 456788899999999999999888888877665 3689999999985422 367999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|+|.+ +..+|+.|+|+|++ .+|+.|+|.
T Consensus 190 G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~v~i~~~~h~~F~R~ 261 (378)
T PRK14278 190 GVGEV--------IPDPCHECAGDGRVRARREITVKIPAGVGDGMRIRLAAQGEVGPGGGPAGDLYVEVHEQPHDVFVRD 261 (378)
T ss_pred cccee--------eCCCCCCCCCceeEecceEEEEEECCCCCCCcEEEEccCcCCCCCCCCCCCEEEEEEECcCCCEEEc
Confidence 99998 78899999999962 678999999
Q ss_pred CCceEee---------------e-----eeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCC
Q psy2902 777 GIGRIKR---------------N-----KTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGD 836 (945)
Q Consensus 777 G~g~~~~---------------~-----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~ 836 (945)
|.++..+ . ..++|.||+|+++|++++++|+|+|...++.+|||||+|+|..|..++.++.
T Consensus 262 G~DL~~~~~Isl~eAl~G~~~~i~tld~~~i~v~ip~g~~~g~~lrl~g~G~p~~~~~~~GDL~V~~~V~~P~~Ls~~qk 341 (378)
T PRK14278 262 GDDLHCTVSVPMVDAALGTTVTVEAILDGPSEITIPPGTQPGSVITLRGRGMPHLRSGGRGDLHAHVEVVVPTRLDHEDI 341 (378)
T ss_pred CCCEEEEEecCHHHHhcCCeEEEecCCCCeEEEEeCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHH
Confidence 9444333 2 3458999999999999999999999766567899999999999998887776
Q ss_pred CceeEE
Q psy2902 837 DLHYEM 842 (945)
Q Consensus 837 dl~~~~ 842 (945)
.++..+
T Consensus 342 ~~l~~~ 347 (378)
T PRK14278 342 ELLREL 347 (378)
T ss_pred HHHHHH
Confidence 555443
|
|
| >PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-18 Score=148.23 Aligned_cols=79 Identities=42% Similarity=0.696 Sum_probs=68.7
Q ss_pred CceeEEeeCHHHHhcCCeEEEecCCC-eEEEEeCCCCCCCcEEEECCCCcCCCCCC-CCccEEEEEEEECCCCCCHHHHH
Q psy2902 837 DLHYEMPISFSTAALGGEIEAPTLNG-KAFFVIPEGTQSGKIFRLRGKGIKNIRSS-IPGDLFCHVTIETPVQLTEYQKK 914 (945)
Q Consensus 837 dl~~~~~i~l~eal~G~~~~v~~l~g-~~~~~i~~~~~~g~~~~i~g~G~~~~~~~-~~Gdl~v~~~i~~p~~l~~~~~~ 914 (945)
||+++++|+++||++|++++|+|+|| ...+.+|+++++|+++||+|+|||...++ .+|||||+|+|.+|++||++||+
T Consensus 1 DL~~~~~I~l~~al~G~~i~i~~l~g~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~qk~ 80 (81)
T PF01556_consen 1 DLYCTIPISLKEALLGGTISIPTLDGKTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQKE 80 (81)
T ss_dssp EEEEEEEEEHHHHHH-EEEEEE-TTS-EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHHHH
T ss_pred CeEEEEEeCHHHHhCCCEEEEECCCCCEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHHhc
Confidence 78999999999999999999999999 67888999999999999999999987665 89999999999999999999998
Q ss_pred H
Q psy2902 915 L 915 (945)
Q Consensus 915 ~ 915 (945)
|
T Consensus 81 l 81 (81)
T PF01556_consen 81 L 81 (81)
T ss_dssp H
T ss_pred C
Confidence 6
|
The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B .... |
| >PRK14281 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=8.7e-19 Score=196.12 Aligned_cols=151 Identities=26% Similarity=0.483 Sum_probs=125.0
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc------------cccCCCCCccccccCc---------CcccCCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS------------WDICKSCYGNGAKKGT---------SPISCFTCSG 741 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~------------~~~C~~C~G~G~~~~~---------~~~~C~~C~G 741 (945)
.++.+....+.++|++.+.+.....+......| ...|+.|+|+|..... .+++|+.|+|
T Consensus 134 ~~g~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~G 213 (397)
T PRK14281 134 IPGTDLKIRLKLTLEEIAKGVEKTLKIKKQVPCKECNGTGSKTGATETCPTCHGSGEVRQASKTMFGQFVNITACPTCGG 213 (397)
T ss_pred CCCCCEEEEEEeEHHHHhCCeEEEEEEEeeecCCCCCCcccCCCCCccCCCCCCCcEEEEEEecccceEEEEEecCCCcc
Confidence 457788999999999999999888888777665 3689999999986432 3679999999
Q ss_pred CceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCC
Q psy2902 742 QGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNG 777 (945)
Q Consensus 742 ~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G 777 (945)
+|++ +..+|+.|+|.|++ .+|+.|+|.|
T Consensus 214 ~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDL~i~i~~~~h~~F~R~G 285 (397)
T PRK14281 214 EGRV--------VKDRCPACYGEGIKQGEVTVKVTVPAGVQDGNYLTLRGQGNAGPRGGAPGDLIVVIEEKPHELFVRNG 285 (397)
T ss_pred eeee--------eCCCCCCCCCCccEecceEEEEecCCCCCCCCEEEEecccccCCCCCCCCcEEEEEEEcCCCCeEEec
Confidence 9998 78899999999972 6789999999
Q ss_pred CceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCc
Q psy2902 778 IGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDL 838 (945)
Q Consensus 778 ~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl 838 (945)
..+..+ .+ .++|+||+|+++|++++|+|+|+|..+++.+|||||+|+|..|..++.++..+
T Consensus 286 ~DL~~~~~Isl~eAl~G~~~~i~tldg~i~v~ip~g~~~G~~~ri~g~G~P~~~~~~~GDL~V~~~V~~P~~Ls~~qk~~ 365 (397)
T PRK14281 286 DDVIYNLAVSYPDLVLGTKVEVPTLDGAVKLTIPAGTQPETMLRIPGKGIGHLRGSGRGDQYVRVNVFVPKEVSHQDKEL 365 (397)
T ss_pred CCEEEEEEecHHHHhcCCeEEeecCCccEEEEeCCccCCCcEEEEcCCCCCCCCCCCCCCEEEEEEEEcCCCCCHHHHHH
Confidence 544444 22 25899999999999999999999976656789999999999999888777655
Q ss_pred eeE
Q psy2902 839 HYE 841 (945)
Q Consensus 839 ~~~ 841 (945)
+.+
T Consensus 366 l~~ 368 (397)
T PRK14281 366 LKE 368 (397)
T ss_pred HHH
Confidence 444
|
|
| >PRK14283 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-18 Score=191.21 Aligned_cols=169 Identities=24% Similarity=0.462 Sum_probs=132.3
Q ss_pred ccccccccc-ccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 661 NFADAFGDI-FGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 661 ~f~d~f~~~-F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
+|+|+|+.| |++.. .... .++.+...++.++|+..+.+............| ...|+.|+|+|
T Consensus 98 ~~~~~f~~~~fgg~~-~~~~---~kg~di~~~l~vsLed~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 173 (378)
T PRK14283 98 GIGNIFDMFGFGGGS-RHGP---QRGADIYTEVEITLEEAASGVEKDIKVRHTKKCPVCNGSRAEPGSEVKTCPTCGGTG 173 (378)
T ss_pred chhhhccccccCCCC-CCCc---cCCCCeEEEeeeeHHHHhCCcceEEEeeeeccCCCCCccccCCCCCCccCCCcCCcc
Confidence 355667666 76532 3332 245688899999999999999887777776655 36799999999
Q ss_pred cccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE------------------------------
Q psy2902 727 AKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------ 767 (945)
Q Consensus 727 ~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------ 767 (945)
..... ...+|+.|+|+|.. +..+|..|+|+|.+
T Consensus 174 ~~~~~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~IppG~~~G~~i~l~g~G~~~~ 245 (378)
T PRK14283 174 QVKQVRNTILGQMMNVTTCPDCQGEGKI--------VEKPCSNCHGKGVVRETKTISVKIPAGVETGSRLRVSGEGEMGD 245 (378)
T ss_pred EEEEEEeccCceEEEEEECCCCCcccee--------cCCCCCCCCCceeeccceeEEEEECCCCCCCcEEEEeccccCCC
Confidence 86422 36799999999998 78899999999962
Q ss_pred --------------eecCCcccCCCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 768 --------------IPHPCLDCNGIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 768 --------------~~~~c~~c~G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
.+|+-|+|.|.++... .+ +++|.||+|+++|++++++|+|+|...++
T Consensus 246 ~~~~~GDLiv~i~v~~~~~f~r~G~DL~~~~~Isl~eAl~G~~~~i~tldG~i~v~ip~g~~~g~~~ri~g~G~p~~~~~ 325 (378)
T PRK14283 246 RGGEPGDLYVVIKVKPHKIFRREGANLYYEKPISFVQAALGDTVDVPTIDGPVELKIPAGTQSGTTFRLKGHGMPSLRWS 325 (378)
T ss_pred CCCCCccEEEEEEEEcCCCEEEecCCEEEEEecCHHHHhcCCeEEEEcCCceEEEEeCCCCCCCCEEEECCCCCCCCCCC
Confidence 5688888888443333 33 46899999999999999999999976655
Q ss_pred CCccEEEEEEEecCCcccccCCCceeE
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
.+|||||+|+|..|+.++.++..++.+
T Consensus 326 ~~GdL~v~~~v~~P~~l~~~q~~ll~~ 352 (378)
T PRK14283 326 GKGNLYVKVKVVVPKKLSPKQKELLRE 352 (378)
T ss_pred CCCCEEEEEEEEeCCCCCHHHHHHHHH
Confidence 789999999999998888777665544
|
|
| >PRK14297 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=191.16 Aligned_cols=172 Identities=23% Similarity=0.436 Sum_probs=134.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
+-|+++|+..|++. +..... ..++.+...++.++|++.+.+.....+......| ..+|+.|+|+|
T Consensus 98 d~f~~~fgg~~g~~-~~~~~~-~~kg~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 175 (380)
T PRK14297 98 DIFDSFFGGGFGSS-SRRRNG-PQRGADIEYTINLTFEEAVFGVEKEISVTRNENCETCNGTGAKPGTSPKTCDKCGGTG 175 (380)
T ss_pred HHHHHHhccCcccc-ccccCC-CCCCCCEEEEEEEEHHHhcCCeEEEEEeeeeccCCCcccccccCCCcCccCCCccCeE
Confidence 44667777545432 211111 2456789999999999999999888888877665 36899999999
Q ss_pred cccC---------cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE------------------------------
Q psy2902 727 AKKG---------TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------ 767 (945)
Q Consensus 727 ~~~~---------~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------ 767 (945)
.... ..+++|+.|+|+|.+ +..+|..|+|+|.+
T Consensus 176 ~~~~~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~i~V~Ip~G~~~G~~I~l~g~G~~~~ 247 (380)
T PRK14297 176 QIRVQRNTPLGSFVSTTTCDKCGGSGKV--------IEDPCNKCHGKGKVRKNRKIKVNVPAGVDTGNVIPLRGQGEHGK 247 (380)
T ss_pred EEEEEEEcCCceeEEEEeCCCCCCCceE--------cCCCCCCCCCCeEEEeEeEEEEEeCCCCCCCcEEEEecCccCCC
Confidence 7642 247799999999998 78899999999952
Q ss_pred --------------eecCCcccCCCceEee---------------ee----eEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 768 --------------IPHPCLDCNGIGRIKR---------------NK----TLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 768 --------------~~~~c~~c~G~g~~~~---------------~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
.+|+-|+|.|..+... .+ +++|+||+|+++|++++++|+|+|..+++
T Consensus 248 ~~~~~GDL~v~v~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~i~~ldg~~~v~ip~g~~~g~~~ri~g~G~p~~~~~ 327 (380)
T PRK14297 248 NGGPTGDLYINIRVAPHKTFKRKGFDIYIDKHISFAKAALGTEIKVPTVDGEVKYEVPAGTQPGTVFRLKGKGVPRVNST 327 (380)
T ss_pred CCCCCccEEEEEEEcCCCCEEEeCCCEEEEEEeCHHHHhCCCcEEEEcCCCcEEEEECCCcCCCCEEEEcCCCcCCCCCC
Confidence 5688899999544443 22 36899999999999999999999976666
Q ss_pred CCccEEEEEEEecCCcccccCCCceeE
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
.+|||||+|+|..|..++.++..++..
T Consensus 328 ~~GDL~v~~~v~~P~~ls~~q~~~l~~ 354 (380)
T PRK14297 328 GRGNQYVTVIVDIPKKLNSKQKEALTM 354 (380)
T ss_pred CCCcEEEEEEEEcCCCCCHHHHHHHHH
Confidence 789999999999999888777655443
|
|
| >TIGR02349 DnaJ_bact chaperone protein DnaJ | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.7e-18 Score=188.01 Aligned_cols=171 Identities=24% Similarity=0.463 Sum_probs=132.0
Q ss_pred ccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccc
Q psy2902 660 SNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNG 726 (945)
Q Consensus 660 ~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G 726 (945)
+-|+.+|+..++....... ...++.+...++.++|+..|.+.....+......| ...|+.|+|+|
T Consensus 93 ~~f~~~fg~~~g~~~~~~~--~~~~~~d~~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G 170 (354)
T TIGR02349 93 DIFGDFFGGGGGSGRRRRS--GPRRGEDLRYDLELTFEEAVFGVEKEIEIPRKESCETCHGTGAKPGTDPKTCPTCGGTG 170 (354)
T ss_pred hhHHHHhccCcccCccccC--CCCCCCCeEEEEEEEHHHHhCCeeEEEEeecCCcCCCCCCCCCCCCCCCccCCCCCCee
Confidence 3355566644432222111 12456788999999999999999888888777665 47899999999
Q ss_pred cccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE------------------------------
Q psy2902 727 AKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------ 767 (945)
Q Consensus 727 ~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------ 767 (945)
..... ++++|+.|+|+|+. +...|+.|+|+|++
T Consensus 171 ~~~~~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~ 242 (354)
T TIGR02349 171 QVRRQQGTPFGFFQQQQTCPTCGGEGKI--------IKEPCSTCKGKGRVKERKTITVKIPAGVDTGQRLRVSGKGNAGE 242 (354)
T ss_pred EEEEEEeccCCceEEEEecCCCCCccee--------cCCCCCCCCCCcEecccceEEEEECCCCCCCCEEEEecCccCCC
Confidence 75422 36799999999998 77899999999972
Q ss_pred --------------eecCCcccCCCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 768 --------------IPHPCLDCNGIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 768 --------------~~~~c~~c~G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
.+|+-|+|.|..+... . .+++|.||+|+++|++++++|+|+|..++.
T Consensus 243 ~~~~~GDl~v~i~v~~h~~f~r~g~DL~~~~~isl~eAl~G~~~~i~~ldG~i~v~ip~g~~~g~~~~i~g~G~p~~~~~ 322 (354)
T TIGR02349 243 NGGPNGDLYVVIRVKPHKIFERDGNDLYIEVPISFTQAILGGEIEVPTLDGDVKLKIPAGTQSGTVFRLKGKGVPRLRGN 322 (354)
T ss_pred CCCCCCCEEEEEEEecCcceEEecCCEEEEEEeCHHHHhCCCeEEEecCCceEEEEECCcccCCcEEEECCCCcCCCCCC
Confidence 5688899988544433 2 246899999999999999999999977656
Q ss_pred CCccEEEEEEEecCCcccccCCCcee
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHY 840 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~ 840 (945)
.+|||||+|+|.+|+.|++++.+++.
T Consensus 323 ~~GDL~i~~~v~~P~~l~~~~~~~l~ 348 (354)
T TIGR02349 323 GRGDLLVTVKVETPKNLSKEQKELLE 348 (354)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHH
Confidence 78999999999999999888765543
|
This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. |
| >PRK14289 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.1e-18 Score=187.99 Aligned_cols=171 Identities=26% Similarity=0.480 Sum_probs=130.4
Q ss_pred cccccccccccc-----CCCC-CCCCCCCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCC
Q psy2902 662 FADAFGDIFGDI-----FGSN-RDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSC 722 (945)
Q Consensus 662 f~d~f~~~F~~~-----~g~~-~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C 722 (945)
|+++|+.+|+++ ++++ ......++.+....+.++|++.+.+.....+....+.| ...|+.|
T Consensus 98 f~~~fg~~~gg~~~~~~~~~~~~~~~~~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C 177 (386)
T PRK14289 98 FGDIFGGHGGGFGGFGGFGGGGSQQRVFRGSDLRVKVKLNLKEISTGVEKKFKVKKYVPCSHCHGTGAEGNNGSETCPTC 177 (386)
T ss_pred hhhhhcccccCcccccccccccccCCCCCCCCeEEEEEEEHHHhhCCeEEEEEEEeecccCCCCCCCCCCCCCCCcCCCC
Confidence 556666655431 1211 11223467789999999999999999988888877665 3789999
Q ss_pred CccccccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE--------------------------
Q psy2902 723 YGNGAKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV-------------------------- 767 (945)
Q Consensus 723 ~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~-------------------------- 767 (945)
+|+|..... ...+|+.|+|+|.+ +...|+.|+|+|.+
T Consensus 178 ~G~G~~~~~~~~~~G~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~l~g~G 249 (386)
T PRK14289 178 KGSGSVTRVQNTILGTMQTQSTCPTCNGEGKI--------IKKKCKKCGGEGIVYGEEVITVKIPAGVAEGMQLSMNGKG 249 (386)
T ss_pred cCeEEEEEEEecccceEEEEEecCCCCccccc--------cCcCCCCCCCCcEEeeeEEEEEEeCCCCCCCCEEEEeccc
Confidence 999987532 36799999999998 77889999999973
Q ss_pred ------------------eecCCcccCCCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCC
Q psy2902 768 ------------------IPHPCLDCNGIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPG 810 (945)
Q Consensus 768 ------------------~~~~c~~c~G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~ 810 (945)
.+|+-|.++|..+..+ . .+++|.||+|+++|++++++|+|+|.
T Consensus 250 ~~~~~~~~~GDL~v~v~v~~~~~f~r~g~DL~~~~~Isl~eAl~G~~~~i~~ldg~i~v~ip~g~~~g~~~ri~g~G~p~ 329 (386)
T PRK14289 250 NAGKHGGVNGDLLVVIEEEPHPELIRDENDLIYNLLLSVPTAALGGAVEVPTIDGKAKVKIEAGTQPGKVLRLRNKGLPS 329 (386)
T ss_pred cCCCCCCCCccEEEEEEEecCCcccccccceeEEeccCHHHHhCCCeEEeecCCceEEEEECCccCCCcEEEECCCCcCC
Confidence 3456677777433332 2 23689999999999999999999997
Q ss_pred CCCCCCccEEEEEEEecCCcccccCCCcee
Q psy2902 811 LNGGSNGNLYIEIHIKPHKVFERDGDDLHY 840 (945)
Q Consensus 811 ~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~ 840 (945)
.+++.+|||||+|+|+.|..++.++..++.
T Consensus 330 ~~~~~~GDL~v~~~v~~P~~l~~~q~~~l~ 359 (386)
T PRK14289 330 VNGYGTGDLLVNVSVYIPETLSKEEKQTLE 359 (386)
T ss_pred CCCCCCCcEEEEEEEEeCCCCCHHHHHHHH
Confidence 766678999999999999888777655443
|
|
| >COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-15 Score=166.59 Aligned_cols=199 Identities=25% Similarity=0.414 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCC
Q psy2902 218 AQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFL 297 (945)
Q Consensus 218 ~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~l 297 (945)
.--+.+.+|.+.+||++..++.+|.|+|.+...+. ...-.++++|+||||||++++.- +.+.. .+...+
T Consensus 165 ~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d--EkelGv~lIDiG~GTTdIai~~~------G~l~~---~~~ipv 233 (418)
T COG0849 165 NILENLEKCVERAGLKVDNIVLEPLASALAVLTED--EKELGVALIDIGGGTTDIAIYKN------GALRY---TGVIPV 233 (418)
T ss_pred HHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc--cHhcCeEEEEeCCCcEEEEEEEC------CEEEE---EeeEee
Confidence 34678899999999999999999999999987776 56778999999999999999974 22222 223456
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce------eeeeceeeccCCCCeEEEEEEc
Q psy2902 298 GGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT------EINEPYIAMSNGAPVHLNLKIT 371 (945)
Q Consensus 298 GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~------~i~i~~~~~~~~~~~~~~~~it 371 (945)
||++++..|..-|.-. .+.||++|..+...... .+.++.... +....++
T Consensus 234 gG~~vT~DIa~~l~t~-------------------~~~AE~iK~~~g~a~~~~~~~~~~i~v~~vg~------~~~~~~t 288 (418)
T COG0849 234 GGDHVTKDIAKGLKTP-------------------FEEAERIKIKYGSALISLADDEETIEVPSVGS------DIPRQVT 288 (418)
T ss_pred CccHHHHHHHHHhCCC-------------------HHHHHHHHHHcCccccCcCCCcceEecccCCC------cccchhh
Confidence 9999999998665433 45789999998765433 244443322 2267899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC------------CCCCCc
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR------------DINPDE 439 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~------------~~~p~~ 439 (945)
+.++.+++++.+.+++.+++..|++.+.+..-...|+|+||++.+|.+.+..++.|+.++.. ..+|..
T Consensus 289 ~~~ls~II~aR~~Ei~~lV~~~l~~~g~~~~~~~gvVlTGG~a~l~Gi~elA~~if~~~vRig~P~~~~Gl~d~~~~p~f 368 (418)
T COG0849 289 RSELSEIIEARVEEILELVKAELRKSGLPNHLPGGVVLTGGGAQLPGIVELAERIFGRPVRLGVPLNIVGLTDIARNPAF 368 (418)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCccccCCCeEEEECchhcCccHHHHHHHhcCCceEeCCCccccCchhhccCchh
Confidence 99999999999999999999999999987666788999999999999999999999765421 236888
Q ss_pred hhhhhHHHhhhhc
Q psy2902 440 AVAVGAAIQGSVL 452 (945)
Q Consensus 440 avA~GAa~~a~~~ 452 (945)
+.|.|..++++..
T Consensus 369 s~avGl~~~~~~~ 381 (418)
T COG0849 369 STAVGLLLYGALM 381 (418)
T ss_pred hhhHHHHHHHhhc
Confidence 9999999998753
|
|
| >PRK14291 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-17 Score=186.21 Aligned_cols=141 Identities=29% Similarity=0.557 Sum_probs=117.4
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccC-----cCcccCCCCCCCce
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKG-----TSPISCFTCSGQGQ 744 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~ 744 (945)
.++.+....+.++|++.|.+.....+......| ...|+.|+|+|.... ..+++|+.|+|+|.
T Consensus 127 ~~g~di~~~l~vsLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~ 206 (382)
T PRK14291 127 VKGEDIYQTVEISLEEAYTGTTVSLEVPRYVPCEACGGTGYDPGSGEKVCPTCGGSGEIYQRGGFFRISQTCPTCGGEGV 206 (382)
T ss_pred cCCCCEEEEEEEEHHHhhCCEEEEEEEeeeccCCCCccccCCCCCCCccCCCCCCceEEEEecceEEEEecCCCCCCceE
Confidence 467788999999999999999888888777665 378999999998643 25789999999994
Q ss_pred EeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccCCCce
Q psy2902 745 VRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCNGIGR 780 (945)
Q Consensus 745 ~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~G~g~ 780 (945)
+...|+.|+|.|++ .+|+.|+|.|..+
T Consensus 207 ---------~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~~G~~i~~~g~G~~~~~g~~~GDL~v~i~~~~h~~F~r~G~DL 277 (382)
T PRK14291 207 ---------LREPCSKCNGRGLVIKKETIKVRIPPGVDNGSKLRVPGKGHAGRFGGPPGDLYIIVKVKPHPLFERRGDNL 277 (382)
T ss_pred ---------EccCCCCCCCCceEEeeeEEEEEeCCCCCCCCEEEEecCcCCCCCCCCCccEEEEEEEccCCCeeeecCCe
Confidence 36789999999962 6789999999544
Q ss_pred Eee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCC--ccc
Q psy2902 781 IKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHK--VFE 832 (945)
Q Consensus 781 ~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~--~~~ 832 (945)
+.+ .+.++|+||+|+++|++++|+|+|+|..++..+|||||+|+|..|. .++
T Consensus 278 ~~~~~Isl~eAl~G~~~~i~~ldG~~l~V~Ip~g~~~G~~i~i~G~G~p~~~~~~~GDL~V~~~V~~P~~~~ls 351 (382)
T PRK14291 278 YLDVNITVAEAVLGTELEVPLLDGKKEKVKIPPGTKEGDKIRVPGKGMPRLKGSGYGDLVVRVHIDVPKISMLS 351 (382)
T ss_pred EEEEEeeHHHHhCCCEEEEecCCCCEEEEEECCccCCCCEEEECCCCCCCCCCCCCCCEEEEEEEEeCCCcCcC
Confidence 444 2346899999999999999999999977656789999999999986 466
|
|
| >PRK14293 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.8e-17 Score=181.94 Aligned_cols=152 Identities=23% Similarity=0.401 Sum_probs=123.5
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc-------------cccCCCCCccccccC---------cCcccCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS-------------WDICKSCYGNGAKKG---------TSPISCFTCS 740 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~-------------~~~C~~C~G~G~~~~---------~~~~~C~~C~ 740 (945)
.++.+....+.++|+..+.+.....+......| ...|+.|+|+|.... ++..+|+.|.
T Consensus 114 ~kg~di~~~l~vsLee~~~G~~k~i~~~r~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C~ 193 (374)
T PRK14293 114 QRGDDLRYDLKLDFREAIFGGEKEIRIPHLETCETCRGSGAKPGTGPTTCSTCGGAGQVRRATRTPFGSFTQVSECPTCN 193 (374)
T ss_pred cCCCCeEEEEEeeHHHHhCCceEEEEeeccccCCCCCCcCCCCCCCCeeCCCCCCcceEEEEEecCcceEEEEeeCCCCC
Confidence 456788899999999999999888888776655 367999999998642 2357999999
Q ss_pred CCceEeEeeceeeeeecCCCCCCceEE--------------------------------------------eecCCcccC
Q psy2902 741 GQGQVRMQQGFFSIQQTCPKCQGAGKV--------------------------------------------IPHPCLDCN 776 (945)
Q Consensus 741 G~G~~~~~~~~~~~~~~C~~C~G~g~~--------------------------------------------~~~~c~~c~ 776 (945)
|.|+. +..+|+.|.|+|++ .+|+-|++.
T Consensus 194 G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~IppG~~~G~~i~l~g~G~~~~~~~~~GDL~v~v~v~~~~~f~r~ 265 (374)
T PRK14293 194 GTGQV--------IEDPCDACGGQGVKQVTKKLKINIPAGVDTGTRLRVSGEGDAGLRGGPPGDLYVYLFVKNDPEFRRD 265 (374)
T ss_pred cceeE--------eccCCCCCCCCcccccceEEEEEeCCCCCCCCEEEEccCccCCCCCCCCcCEEEEEEEeCCCccChh
Confidence 99998 78899999999962 456677777
Q ss_pred CCce---------------Eeeee----eEEEEeecCCCCCeEEEEcCCCCCCCCC-CCCccEEEEEEEecCCcccccCC
Q psy2902 777 GIGR---------------IKRNK----TLEVKIPAGIENNMRIRSTGNGEPGLNG-GSNGNLYIEIHIKPHKVFERDGD 836 (945)
Q Consensus 777 G~g~---------------~~~~~----~l~v~ip~G~~~g~~i~~~g~G~~~~~~-~~~Gdl~i~i~v~~~~~~~r~g~ 836 (945)
|..+ ..... .++|+||+|+++|++++++|+|+|..++ +.+|||||+|+|.+|+.|++++.
T Consensus 266 g~DL~~~~~Isl~eAl~G~~~~i~~ldG~~~i~ip~~~~~g~~~ri~g~G~p~~~~~~~~GDL~v~~~v~~P~~l~~~~~ 345 (374)
T PRK14293 266 GINILSEIKISYLQAILGDTLEVDTVDGPVELTIPAGTQPNTVLTLENKGVPRLGNPVARGDHLITVKVKIPTRISDEER 345 (374)
T ss_pred hhceEEEeccCHHHHhCCCEEEecCCCCCEEEEeCCCCCCCCEEEECCCCCCCCCCCCCcCCEEEEEEEECCCCCCHHHH
Confidence 7333 33322 2579999999999999999999997654 35899999999999999999998
Q ss_pred CceeEE
Q psy2902 837 DLHYEM 842 (945)
Q Consensus 837 dl~~~~ 842 (945)
+++.++
T Consensus 346 ~l~~~l 351 (374)
T PRK14293 346 ELLEKL 351 (374)
T ss_pred HHHHHH
Confidence 887654
|
|
| >cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=170.82 Aligned_cols=308 Identities=15% Similarity=0.143 Sum_probs=192.9
Q ss_pred EEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC---------CcEEecHHHHHhhhhCCCchhHHHHHhhCC
Q psy2902 74 IGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN---------GEILVGAPAKRQAVTNPKNTIYAAKRLIGR 144 (945)
Q Consensus 74 iGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~k~llg~ 144 (945)
|.||+||.++++++..++.|..+. ||+++...+ ...++|.+|...... .
T Consensus 2 iViD~Gs~~~r~G~a~~~~p~~~~--------ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~-~------------- 59 (371)
T cd00012 2 VVIDNGSGTIKAGFAGEDAPRVVF--------PSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGL-G------------- 59 (371)
T ss_pred EEEECCCCeEEEEeCCCCCCceEe--------eccceeecCcccccccCCCceEEchhhhhCCCC-c-------------
Confidence 789999999999998776565443 666665432 345677766532100 0
Q ss_pred CCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHH
Q psy2902 145 KFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224 (945)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 224 (945)
-....++.+..+...+.+..+++++....... ...-..+++++|..++..+|+.+.
T Consensus 60 -----------------------~~~~~P~~~G~i~d~~~~e~~~~~~~~~~l~~-~~~~~~vvl~~p~~~~~~~r~~~~ 115 (371)
T cd00012 60 -----------------------LELIYPIEHGIVVDWDDMEKIWDHLFFNELKV-NPEEHPVLLTEPPLNPKSNREKTT 115 (371)
T ss_pred -----------------------eEEcccccCCEEeCHHHHHHHHHHHHHHhcCC-CCCCCceEEecCCCCCHHHHHHHH
Confidence 00112223334455566677777776543211 122457899999999988888886
Q ss_pred H-HHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHH
Q psy2902 225 D-AGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303 (945)
Q Consensus 225 ~-Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD 303 (945)
+ +.+..|++.+.++++|.+|+++++. .+.+|+|+|+++++++.+.- +.. +........+||.++|
T Consensus 116 e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~lVVDiG~~~t~i~pv~~------G~~-~~~~~~~~~~GG~~l~ 181 (371)
T cd00012 116 EIMFETFNVPALYVAIQAVLSLYASGR-------TTGLVVDSGDGVTHVVPVYD------GYV-LPHAIKRLDLAGRDLT 181 (371)
T ss_pred HHhhccCCCCEEEEechHHHHHHhcCC-------CeEEEEECCCCeeEEEEEEC------CEE-chhhheeccccHHHHH
Confidence 6 4677999999999999999999865 56899999999999998863 221 1112233568999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCccee--------eeeceeeccCCCCeEEEEEEcHHHH
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTE--------INEPYIAMSNGAPVHLNLKITRAKL 375 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~--------i~i~~~~~~~~~~~~~~~~itr~~~ 375 (945)
+.|.+++..+... .+.. .-...++.+|+.+....... ...........-+....+.++.+.|
T Consensus 182 ~~l~~~l~~~~~~---~~~~-------~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~ 251 (371)
T cd00012 182 RYLKELLRERGYE---LNSS-------DEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERF 251 (371)
T ss_pred HHHHHHHHhcCCC---ccch-------hHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHh
Confidence 9999988654310 0111 11344666666654321100 0000000000001123456665543
Q ss_pred ---HHHHHH-----HHHHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhCC----------CCCCCC
Q psy2902 376 ---ELLVDE-----LITRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFGK----------DPRRDI 435 (945)
Q Consensus 376 ---e~~~~~-----~i~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg~----------~~~~~~ 435 (945)
|.++.| ....+.+.|.++++....+. .-.+.|+|+||+|++|.+.+.|.+.+.. .+....
T Consensus 252 ~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~~gl~~rl~~el~~~~~~~~~~~~~~~~~~ 331 (371)
T cd00012 252 RAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLFPGFGERLQKELLKLAPPSKDTKVKVIAPP 331 (371)
T ss_pred hChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCCcCHHHHHHHHHHHhCCcccceEEEEccCC
Confidence 122333 12366777888887654322 2357899999999999999999988852 123456
Q ss_pred CCCchhhhhHHHhhhh
Q psy2902 436 NPDEAVAVGAAIQGSV 451 (945)
Q Consensus 436 ~p~~avA~GAa~~a~~ 451 (945)
+|..++-.||+++|..
T Consensus 332 ~~~~~aw~G~si~as~ 347 (371)
T cd00012 332 ERKYSVWLGGSILASL 347 (371)
T ss_pred CccccEEeCchhhcCc
Confidence 7889999999999964
|
Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins. |
| >PRK14292 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-16 Score=175.15 Aligned_cols=151 Identities=25% Similarity=0.424 Sum_probs=123.6
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc--------------cccCCCCCccccccCc---------CcccCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS--------------WDICKSCYGNGAKKGT---------SPISCFTC 739 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~--------------~~~C~~C~G~G~~~~~---------~~~~C~~C 739 (945)
.++.+....+.++|++.+.+.....+......| ...|+.|+|+|..... ..++|+.|
T Consensus 110 ~~g~d~~~~l~~sLee~~~G~~~~v~~~r~~~C~~C~G~G~~~~~~~~~~C~~C~G~G~~~~~~~~~~g~~~~~~~C~~C 189 (371)
T PRK14292 110 ARGDDLETEARITLEQARAGEEVEVEVDRLTECEHCHGSRTEPGGKPPKTCPTCRGAGAVRAQARTIFGVVETQQPCPTC 189 (371)
T ss_pred cCCCCeEEEEeccHHHHcCCeEEEEEEEeeecCCCCcccccCCCCCCCccCCCCCCccEEEEEEeccCceEEEeeecCCC
Confidence 356788899999999999998888777776554 4689999999986532 35799999
Q ss_pred CCCceEeEeeceeeeeecCCCCCCceEE------------------------------------------eecCCcccCC
Q psy2902 740 SGQGQVRMQQGFFSIQQTCPKCQGAGKV------------------------------------------IPHPCLDCNG 777 (945)
Q Consensus 740 ~G~G~~~~~~~~~~~~~~C~~C~G~g~~------------------------------------------~~~~c~~c~G 777 (945)
+|.|.. +...|+.|.|+|++ .+|+-|+|.|
T Consensus 190 ~G~G~~--------~~~~C~~C~G~g~v~~~~~~~V~Ip~G~~~G~~i~~~G~G~~~~~~~GDL~v~i~v~~h~~f~r~g 261 (371)
T PRK14292 190 RGEGQI--------ITDPCTVCRGRGRTLKAETVKVKLPRGIDEGYRIRVAGMGNEGPGGNGDLYVHIEMEPHPELRREQ 261 (371)
T ss_pred ccccee--------cCCCCCCCCCceEEeecceEEEEECCCCCCCcEEEEecCcCCCCCCCCCEEEEEEEecCCccccch
Confidence 999998 78999999999962 5688899988
Q ss_pred CceEe---------------eeee----EEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCc
Q psy2902 778 IGRIK---------------RNKT----LEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDL 838 (945)
Q Consensus 778 ~g~~~---------------~~~~----l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl 838 (945)
..+.. ...+ ..|+||+|+++|++++|+|+|+|..++..+|||||+|+|.+|+.|+.++..+
T Consensus 262 ~dL~~~~~isl~eAl~G~~~~i~tldG~~~v~ip~g~~~g~~~~i~g~G~p~~~~~~~GDL~V~~~v~~P~~l~~~q~~l 341 (371)
T PRK14292 262 EHLIYEARIGFAKAALGGQITVPTLDGPQVIEVKPGTQHGDLHRLRGQGMPRLQGAGTGDLIVEYEIAVPKQLSPEAREA 341 (371)
T ss_pred hceeEEeccCHHHHhCCCeEEEECCCCCEEEecCCCcCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCHHHHHH
Confidence 44333 3332 3799999999999999999999977666789999999999999998888766
Q ss_pred eeE
Q psy2902 839 HYE 841 (945)
Q Consensus 839 ~~~ 841 (945)
+..
T Consensus 342 l~~ 344 (371)
T PRK14292 342 LEA 344 (371)
T ss_pred HHH
Confidence 543
|
|
| >PTZ00037 DnaJ_C chaperone protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-16 Score=177.20 Aligned_cols=150 Identities=22% Similarity=0.413 Sum_probs=119.1
Q ss_pred CCCCCCccceeeccccccccccceeeEeeccc------------cccCCCCCccccccC---------cCcccCCCCCCC
Q psy2902 684 NKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS------------WDICKSCYGNGAKKG---------TSPISCFTCSGQ 742 (945)
Q Consensus 684 ~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~------------~~~C~~C~G~G~~~~---------~~~~~C~~C~G~ 742 (945)
++.+....+.++|+..|.+.....+......| ..+|+.|+|+|.... ..+++|+.|+|+
T Consensus 122 rg~di~~~l~vtLee~~~G~~~~i~~~r~~~C~~C~G~G~~~~~~~~C~~C~G~G~~~~~~~~g~~~~q~~~~C~~C~G~ 201 (421)
T PTZ00037 122 RGEDIVSHLKVTLEQIYNGAMRKLAINKDVICANCEGHGGPKDAFVDCKLCNGQGIRVQIRQMGSMIHQTQSTCNSCNGQ 201 (421)
T ss_pred CCCCEEEEeeeeHHHHhCCCceEEEeeccccccccCCCCCCCCCCccCCCCCCCCeEEEEEeecceeeEEEEeCCCCCCc
Confidence 35677888999999999888877777776665 378999999997422 246799999999
Q ss_pred ceEeEeeceeeeeecCCCCCCceEE-------------------------------------------eecCCcccCCCc
Q psy2902 743 GQVRMQQGFFSIQQTCPKCQGAGKV-------------------------------------------IPHPCLDCNGIG 779 (945)
Q Consensus 743 G~~~~~~~~~~~~~~C~~C~G~g~~-------------------------------------------~~~~c~~c~G~g 779 (945)
|++ +....+|+.|+|.|++ .+|+.|+|.|..
T Consensus 202 G~~------i~~~~~C~~C~G~g~v~~~~~l~V~Ip~G~~dG~~I~~~G~Gd~~~~~~pGDLiv~I~~~ph~~F~R~G~D 275 (421)
T PTZ00037 202 GKI------IPESKKCKNCSGKGVKKTRKILEVNIDKGVPNQHKITFHGEADEKPNEIPGNVVFILNEKPHDTFKREGGD 275 (421)
T ss_pred cee------ccccccCCcCCCcceeeeeeEEEEeeCCCCCCCcEEEEecccCCCCCCCCCcEEEEEEecCCCCcEEeCCe
Confidence 998 2235889999999972 679999999955
Q ss_pred eEee--------------------eeeEEEEeecC--CCCCeEEEEcCCCCCCCCC-CCCccEEEEEEEecC--Cccccc
Q psy2902 780 RIKR--------------------NKTLEVKIPAG--IENNMRIRSTGNGEPGLNG-GSNGNLYIEIHIKPH--KVFERD 834 (945)
Q Consensus 780 ~~~~--------------------~~~l~v~ip~G--~~~g~~i~~~g~G~~~~~~-~~~Gdl~i~i~v~~~--~~~~r~ 834 (945)
+..+ .+.+.|+||+| +++|++++|+|+|||..+. +.+|||||+|+|..| ..++.+
T Consensus 276 L~~~~~Isl~eAllG~~i~I~tLdG~~l~I~ip~g~vt~pg~~~~I~geGmP~~~~~~~rGDL~V~~~V~~P~~~~Ls~~ 355 (421)
T PTZ00037 276 LFITKKISLYEALTGFVFYITHLDGRKLLVNTPPGEVVKPGDIKVINNEGMPTYKSPFKKGNLYVTFEVIFPVDRKFTNE 355 (421)
T ss_pred EEEEEeCCHHHHhcCCEEEeeCCCCCeEEEEeCCCcccCCCcEEEeCCCCcccCCCCCCCCCEEEEEEEEcCCCCCCCHH
Confidence 4444 33457999999 9999999999999997553 468999999999999 788776
Q ss_pred CCCce
Q psy2902 835 GDDLH 839 (945)
Q Consensus 835 g~dl~ 839 (945)
+..++
T Consensus 356 qk~ll 360 (421)
T PTZ00037 356 EKEIL 360 (421)
T ss_pred HHHHH
Confidence 65443
|
|
| >KOG0712|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.2e-16 Score=161.30 Aligned_cols=138 Identities=26% Similarity=0.464 Sum_probs=117.0
Q ss_pred CCCCCccceeeccccccccccceeeEeecccc------------ccCCCCCccccccCc----------CcccCCCCCCC
Q psy2902 685 KGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW------------DICKSCYGNGAKKGT----------SPISCFTCSGQ 742 (945)
Q Consensus 685 ~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~------------~~C~~C~G~G~~~~~----------~~~~C~~C~G~ 742 (945)
+.+..+++.++|+..|.+.........+..|. ..|+.|.|+|....+ .+..|..|+|+
T Consensus 100 g~~~~~~~~~~Le~~y~G~s~kl~l~~~~iCs~C~GsGgksg~~~~C~~C~GsGv~~~~~~~gPg~~qs~q~~C~~C~G~ 179 (337)
T KOG0712|consen 100 GKDVVHQLKVTLEELYMGKSKKLFLSRNFICSKCSGSGGKSGSAPKCTTCRGSGVQTRTRQMGPGMVQSPQLVCDSCNGS 179 (337)
T ss_pred CCCceEEEEEEHHHhhcCCccceecccCccCCcCCCCCCCCCCCCCCCCCCCCCceeEEEeccccccccceeEeccCCCc
Confidence 56889999999999999988888888877765 679999999987543 57899999999
Q ss_pred ceEeEeeceeeeeecCCCCCCceEE-------------------------------------------eecCCcccCCCc
Q psy2902 743 GQVRMQQGFFSIQQTCPKCQGAGKV-------------------------------------------IPHPCLDCNGIG 779 (945)
Q Consensus 743 G~~~~~~~~~~~~~~C~~C~G~g~~-------------------------------------------~~~~c~~c~G~g 779 (945)
|.. +...+.|+.|.|.+++ .+|+.|.|.|.+
T Consensus 180 G~~------~~~kd~C~~C~G~~~v~~kkil~v~V~~g~~~~~ki~f~geadea~g~~pgD~vl~i~~k~h~~F~Rrg~d 253 (337)
T KOG0712|consen 180 GET------ISLKDRCKTCSGAKVVREKKILEVHVEPGMPHGQKITFKGEADEAPGTKPGDVVLLIDQKEHPGFDRRGSD 253 (337)
T ss_pred ccc------ccccccCcccccchhhhhhheeeccccCCCcccceeeeeeeeeecCCCcCccEEEEecccccccceecccc
Confidence 986 3468899999999972 458899999855
Q ss_pred eEee--------------------eeeEEEEeecC--CCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCC
Q psy2902 780 RIKR--------------------NKTLEVKIPAG--IENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHK 829 (945)
Q Consensus 780 ~~~~--------------------~~~l~v~ip~G--~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~ 829 (945)
+... .+.+++.++|| +.+|++.++.|+|||..+.+ .|||||.+.|+.|+
T Consensus 254 L~~~~~i~l~eal~G~~~~~~~ldGr~l~~~~~pg~vi~~~~~~~v~~~gmp~~~~~-~g~lyi~~~v~fp~ 324 (337)
T KOG0712|consen 254 LYRKLTISLVEALCGFQRVWETLDGRLLKLSSKPGEVISPGDTKRVEGEGMPIFRNP-KGDLYIKFEVKFPK 324 (337)
T ss_pred cceeeecchhhccccceEEEEccCCceEEEecCCCceeChhHEEeecCCCcccccCC-CCcEEEEEEEEcCC
Confidence 5444 44567999999 99999999999999987755 99999999999998
|
|
| >smart00268 ACTIN Actin | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=163.27 Aligned_cols=303 Identities=16% Similarity=0.164 Sum_probs=185.3
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC--------cEEecHHHHHhhhhCCCchhHHHHHhhCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG--------EILVGAPAKRQAVTNPKNTIYAAKRLIGR 144 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~--------~~~~G~~A~~~~~~~~~~~i~~~k~llg~ 144 (945)
.|.||+||.++++++..+..|.++. ||+++...++ ..++|.+|.... ...
T Consensus 3 ~iviD~Gs~~~k~G~~~~~~P~~~~--------ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~----~~~---------- 60 (373)
T smart00268 3 AIVIDNGSGTIKAGFAGEDEPQVVF--------PSIVGRPKDGKGMVGDAKDTFVGDEAQEKR----GGL---------- 60 (373)
T ss_pred eEEEECCCCcEEEeeCCCCCCcEEc--------cceeeEecccccccCCCcceEecchhhhcC----CCc----------
Confidence 5999999999999998777676554 8888775432 235666553210 000
Q ss_pred CCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHH
Q psy2902 145 KFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224 (945)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 224 (945)
....++.+..+...+.+..+++++...... ....-..++++.|...+..+|+.+.
T Consensus 61 ------------------------~~~~P~~~G~i~d~~~~e~i~~~~~~~~l~-~~~~~~~vll~~p~~~~~~~r~~~~ 115 (373)
T smart00268 61 ------------------------ELKYPIEHGIVENWDDMEKIWDYTFFNELR-VEPEEHPVLLTEPPMNPKSNREKIL 115 (373)
T ss_pred ------------------------eecCCCcCCEEeCHHHHHHHHHHHHhhhcC-CCCccCeeEEecCCCCCHHHHHHHH
Confidence 011222334455677777788887764211 1112356899999999899999998
Q ss_pred HHH-HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHH
Q psy2902 225 DAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303 (945)
Q Consensus 225 ~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD 303 (945)
+.+ +..|++.+.++.+|.||+++++ ..+.+|+|+|+++++++.+.- +.. +........+||.++|
T Consensus 116 e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~~------G~~-~~~~~~~~~~GG~~l~ 181 (373)
T smart00268 116 EIMFETFNFPALYIAIQAVLSLYASG-------RTTGLVIDSGDGVTHVVPVVD------GYV-LPHAIKRIDIAGRDLT 181 (373)
T ss_pred HHhhccCCCCeEEEeccHHHHHHhCC-------CCEEEEEecCCCcceEEEEEC------CEE-chhhheeccCcHHHHH
Confidence 776 5779999999999999999986 356899999999999998863 111 1112223468999999
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce---------------eeeeceeeccCCCCeEEEE
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT---------------EINEPYIAMSNGAPVHLNL 368 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~---------------~i~i~~~~~~~~~~~~~~~ 368 (945)
+.|.+++...- ..... ..-...++.+|+.+...... .....+...+ ...+
T Consensus 182 ~~l~~~l~~~~-----~~~~~-----~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~lpd-----g~~~ 246 (373)
T smart00268 182 DYLKELLSERG-----YQFNS-----SAEFEIVREIKEKLCYVAEDFEKEMKKARESSESSKLEKTYELPD-----GNTI 246 (373)
T ss_pred HHHHHHHHhcC-----CCCCc-----HHHHHHHHHhhhheeeecCChHHHHHHhhhcccccccceeEECCC-----CCEE
Confidence 99998886621 00000 01123455555554321100 0000010001 1123
Q ss_pred EEcHHHH---HHHHHHH-----HHHHHHHHHHHHHHcCCCCC--CCCcEEEecCccccHHHHHHHHHHhC------CC--
Q psy2902 369 KITRAKL---ELLVDEL-----ITRTIEPCRIAIKDAGIKVS--DINDIILVGGMTRMPKVQEKVKEFFG------KD-- 430 (945)
Q Consensus 369 ~itr~~~---e~~~~~~-----i~~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~fg------~~-- 430 (945)
.+..+.| |.++.|. ...+.+.|.++|..+..+.. -.+.|+|+||+|++|.+.++|.+.+. .+
T Consensus 247 ~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s~i~Gl~~RL~~el~~~~p~~~~v~ 326 (373)
T smart00268 247 KVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVK 326 (373)
T ss_pred EEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccccCcCHHHHHHHHHHHhCCCCceeE
Confidence 3333332 1222221 23566677777776543211 24679999999999999999988872 11
Q ss_pred CCCCCCCCchhhhhHHHhhhh
Q psy2902 431 PRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 431 ~~~~~~p~~avA~GAa~~a~~ 451 (945)
+....++..++=.||+++|..
T Consensus 327 v~~~~~~~~~~W~G~silas~ 347 (373)
T smart00268 327 VIAPPERKYSVWLGGSILASL 347 (373)
T ss_pred EecCCCCccceEeCcccccCc
Confidence 223445667778898888864
|
ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily |
| >COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=9e-15 Score=138.50 Aligned_cols=196 Identities=29% Similarity=0.389 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCC
Q psy2902 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGG 267 (945)
Q Consensus 188 ~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~Gg 267 (945)
+.+.+++.+++.++..+.+..-++|..-.....+...+..+.||++++..++||+|||.-..++. -.|+|+||
T Consensus 77 iVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~d-------g~VVDiGG 149 (277)
T COG4820 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDD-------GGVVDIGG 149 (277)
T ss_pred HHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCC-------CcEEEeCC
Confidence 67899999999999999999889998776666677778889999999999999999998776655 37889999
Q ss_pred cceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc
Q psy2902 268 GTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK 347 (945)
Q Consensus 268 gT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 347 (945)
||+-+++++- .. ++. ..|..-||.+++-.|+- .++++ .++||+.|..-...
T Consensus 150 GTTGIsi~kk----Gk----Viy-~ADEpTGGtHmtLvlAG--------~ygi~-----------~EeAE~~Kr~~k~~- 200 (277)
T COG4820 150 GTTGISIVKK----GK----VIY-SADEPTGGTHMTLVLAG--------NYGIS-----------LEEAEQYKRGHKKG- 200 (277)
T ss_pred CcceeEEEEc----Cc----EEE-eccCCCCceeEEEEEec--------ccCcC-----------HhHHHHhhhccccc-
Confidence 9999999974 22 122 22455689888766652 23333 56777777542111
Q ss_pred ceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh
Q psy2902 348 QTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427 (945)
Q Consensus 348 ~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 427 (945)
+|.-..+.|++++..+.+...++..+ +..++|+||+|.-|.+.+.+++.|
T Consensus 201 -------------------------~Eif~~v~PV~eKMAeIv~~hie~~~-----i~dl~lvGGac~~~g~e~~Fe~~l 250 (277)
T COG4820 201 -------------------------EEIFPVVKPVYEKMAEIVARHIEGQG-----ITDLWLVGGACMQPGVEELFEKQL 250 (277)
T ss_pred -------------------------hhcccchhHHHHHHHHHHHHHhccCC-----CcceEEecccccCccHHHHHHHHh
Confidence 12223467888888888888887665 468999999999999999999999
Q ss_pred CCCCCCCCCCCchhhhhHHHhh
Q psy2902 428 GKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 428 g~~~~~~~~p~~avA~GAa~~a 449 (945)
+.++..+..|....-+|-|+-+
T Consensus 251 ~l~v~~P~~p~y~TPLgIA~sg 272 (277)
T COG4820 251 ALQVHLPQHPLYMTPLGIASSG 272 (277)
T ss_pred ccccccCCCcceechhhhhhcc
Confidence 9999988889888888877644
|
|
| >PRK13917 plasmid segregation protein ParM; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.1e-12 Score=138.56 Aligned_cols=210 Identities=16% Similarity=0.217 Sum_probs=135.4
Q ss_pred CCCcEE--EEcCCCCCHHH-HHHHHHHHHHc------------CCccceecchhHHHHHHhccCCC------CCCCceEE
Q psy2902 203 EITEAV--ITVPAYFNDAQ-RQATKDAGRIA------------GLEVKRIINEPTAAALAFGLDKS------GKSDRNIV 261 (945)
Q Consensus 203 ~~~~~V--itVPa~~~~~q-r~~l~~Aa~~A------------Gl~~v~li~Ep~AAAl~~~~~~~------~~~~~~vl 261 (945)
.+..++ ...|..+-..+ ++.+++..... -+..+.+++||.+|.+.+..+.. ......++
T Consensus 109 ~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~il 188 (344)
T PRK13917 109 EVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVS 188 (344)
T ss_pred CcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEE
Confidence 344444 58898875444 36676654321 12346689999999887765421 12446789
Q ss_pred EEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHH
Q psy2902 262 VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKI 341 (945)
Q Consensus 262 VvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~ 341 (945)
|+|+|++|+|++++.- ..+. ...++....|..++.+.+.+.+..+.. +..+ +. ..++++
T Consensus 189 vIDIG~~TtD~~v~~~------~~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~---~~~~--~~-------~~ie~~-- 247 (344)
T PRK13917 189 VIDFGSGTTDLDTIQN------LKRV-EEESFVIPKGTIDVYKRIASHISKKEE---GASI--TP-------YMLEKG-- 247 (344)
T ss_pred EEEcCCCcEEEEEEeC------cEEc-ccccccccchHHHHHHHHHHHHHhhCC---CCCC--CH-------HHHHHH--
Confidence 9999999999999852 2221 233344567999999888888754321 2221 11 112222
Q ss_pred HhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHH
Q psy2902 342 ELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQE 421 (945)
Q Consensus 342 ~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~ 421 (945)
|... .+.+. ... .+.+ ++++.++++++++++...+...+.. ..+++.|+|+||++++ +++
T Consensus 248 -l~~g---~i~~~-----~~~----~id~-~~~~~~~~~~~~~~i~~~i~~~~~~----~~~~d~IiL~GGGA~l--l~~ 307 (344)
T PRK13917 248 -LEYG---ACKLN-----QKT----VIDF-KDEFYKEQDSVIDEVMSGFEIAVGN----INSFDRVIVTGGGANI--FFD 307 (344)
T ss_pred -HHcC---cEEeC-----CCc----eEeh-HHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCEEEEECCcHHH--HHH
Confidence 2111 11110 000 1222 4667778888888888888777753 3468999999999987 889
Q ss_pred HHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 422 KVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 422 ~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
.|++.|+.- ....||..|.|+|...+|..+.+
T Consensus 308 ~lk~~f~~~-~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 308 SLSHWYSDV-EKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHcCCe-EEcCChHHHHHHHHHHHHHHHhc
Confidence 999999753 56789999999999999986655
|
|
| >PTZ00280 Actin-related protein 3; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.3e-11 Score=141.03 Aligned_cols=292 Identities=16% Similarity=0.120 Sum_probs=173.8
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC------------cEEecHHHHHhhhhCCCchhHHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG------------EILVGAPAKRQAVTNPKNTIYAAKR 140 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~------------~~~~G~~A~~~~~~~~~~~i~~~k~ 140 (945)
.|.||+||.++++++..+..|.++ +||+++..... ..++|.+|.... .
T Consensus 6 ~iViD~GS~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~----~-------- 65 (414)
T PTZ00280 6 VVVIDNGTGYTKMGYAGNTEPTYI--------IPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAAS----K-------- 65 (414)
T ss_pred eEEEECCCCceEeeeCCCCCCCEE--------ecceeEEeccccccccccccccCCEEEcchhhhCc----C--------
Confidence 599999999999999977777654 37777654221 234454443210 0
Q ss_pred hhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHH
Q psy2902 141 LIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQR 220 (945)
Q Consensus 141 llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr 220 (945)
.-....++....+...+.+..++.++...... ....-..+++|.|..++..+|
T Consensus 66 --------------------------~~~l~~Pi~~G~I~dwd~~e~l~~~~~~~~L~-~~p~~~~vllte~~~~~~~~R 118 (414)
T PTZ00280 66 --------------------------SYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLR-CEPEEHYFILTEPPMNPPENR 118 (414)
T ss_pred --------------------------CcEEecCccCCEeCCHHHHHHHHHHHHHHhhc-cCCCCCceEEeeCCCCcHHHH
Confidence 00122233444556677777788776543211 111234579999999999999
Q ss_pred HHHHHHH-HHcCCccceecchhHHHHHHhccCCCC---CCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCC
Q psy2902 221 QATKDAG-RIAGLEVKRIINEPTAAALAFGLDKSG---KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF 296 (945)
Q Consensus 221 ~~l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~---~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~ 296 (945)
+.+.+.+ +..+++.+.+..+|.+|++++...... ....+-||||+|.++++++.+.- +..-. ....-..
T Consensus 119 e~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tglVVDiG~~~T~i~PV~~------G~~l~-~~~~~~~ 191 (414)
T PTZ00280 119 EYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD------GYVIG-SSIKHIP 191 (414)
T ss_pred HHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeEEEEECCCCceEEEEEEC------CEEcc-cceEEec
Confidence 9987765 555889999999999999987432210 02345699999999999988752 21111 1111246
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce-------------eeeeceeeccCCCC
Q psy2902 297 LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT-------------EINEPYIAMSNGAP 363 (945)
Q Consensus 297 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~-------------~i~i~~~~~~~~~~ 363 (945)
+||.++|+.|.++|.++.. .+... .....++.+|+.++..... .....+...+....
T Consensus 192 ~GG~~lt~~L~~lL~~~~~-----~~~~~-----~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~~~~~~d~~~g 261 (414)
T PTZ00280 192 LAGRDITNFIQQMLRERGE-----PIPAE-----DILLLAQRIKEKYCYVAPDIAKEFEKYDSDPKNHFKKYTAVNSVTK 261 (414)
T ss_pred CcHHHHHHHHHHHHHHcCC-----CCCcH-----HHHHHHHHHHHhcCcccCcHHHHHHHhhcCcccccceEECCCCCCC
Confidence 7999999999998865321 11111 1123466666665432110 00000111110001
Q ss_pred eEEEEEEcHHHHH---HHHHHHH------HHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhC
Q psy2902 364 VHLNLKITRAKLE---LLVDELI------TRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFG 428 (945)
Q Consensus 364 ~~~~~~itr~~~e---~~~~~~i------~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg 428 (945)
....+.+..+.|. -++.|.+ ..+.++|.+.+..+..+. .-.+.|+|+||+|.+|.+.++|++.+.
T Consensus 262 ~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~GG~s~~~Gf~eRL~~El~ 337 (414)
T PTZ00280 262 KPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVR 337 (414)
T ss_pred CccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCcccCcCHHHHHHHHHH
Confidence 1235667766653 2343422 134566777777654332 124679999999999999999988874
|
|
| >PTZ00452 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.1e-11 Score=133.67 Aligned_cols=304 Identities=15% Similarity=0.131 Sum_probs=181.1
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC---------cEEecHHHHHhhhhCCCchhHHHHHhh
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG---------EILVGAPAKRQAVTNPKNTIYAAKRLI 142 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~ll 142 (945)
..|-||+|+.++++++..+..|.++. ||+|...... ..++|.+|.... .
T Consensus 6 ~~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~------~-------- 63 (375)
T PTZ00452 6 PAVVIDNGSGYCKIGIAGDDAPTSCF--------PAIVGRSKQNDGIFSTFNKEYYVGEEAQAKR------G-------- 63 (375)
T ss_pred CEEEEECCCCeEEEeeCCCCCcCEEe--------cceeEEECCccccccccccceEEChhhhccc------c--------
Confidence 46899999999999999888886553 6666553221 234454432100 0
Q ss_pred CCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHH
Q psy2902 143 GRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQA 222 (945)
Q Consensus 143 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~ 222 (945)
.+ ....++....+...+.+..++.++..... .....-..+++|-|...+..+|+.
T Consensus 64 ----------------~~--------~l~~Pi~~G~I~dwd~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~ 118 (375)
T PTZ00452 64 ----------------VL--------AIKEPIQNGIINSWDDIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRER 118 (375)
T ss_pred ----------------Cc--------EEcccCcCCEEcCHHHHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHH
Confidence 00 01223344455666766667777653321 122223568899999999999998
Q ss_pred HHHHH-HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHH
Q psy2902 223 TKDAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGED 301 (945)
Q Consensus 223 l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~ 301 (945)
|.+.+ +..+++.+.+...+.+++++++. .+-||||+|.+.++++-+.- +..- .....-..+||.+
T Consensus 119 l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglVVDiG~~~t~v~PV~d------G~~l-~~~~~r~~~gG~~ 184 (375)
T PTZ00452 119 MTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLVVDSGEGVTHCVPVFE------GHQI-PQAITKINLAGRL 184 (375)
T ss_pred HHHHHhhccCCceEEEechHHHHHHHCCC-------ceeeeecCCCCcceEEEEEC------CEEe-ccceEEeeccchH
Confidence 86664 66788889999999999998754 34699999999999987752 2111 1111224579999
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcce------------eeeeceeeccCCCCeEEEEE
Q psy2902 302 FDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQT------------EINEPYIAMSNGAPVHLNLK 369 (945)
Q Consensus 302 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~------------~i~i~~~~~~~~~~~~~~~~ 369 (945)
+++.|.+.|.++ +..+.... . ...++.+|+.++..... ....++...+ +-.+.
T Consensus 185 lt~~L~~lL~~~-----~~~~~~~~-~----~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPD-----g~~i~ 249 (375)
T PTZ00452 185 CTDYLTQILQEL-----GYSLTEPH-Q----RIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPD-----GNILT 249 (375)
T ss_pred HHHHHHHHHHhc-----CCCCCCHH-H----HHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCC-----CCEEE
Confidence 999888877542 11111110 0 22345555555432110 0000111111 22456
Q ss_pred EcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCC--CCCCCcEEEecCccccHHHHHHHHHHhCC------C--C
Q psy2902 370 ITRAKL---ELLVDELI-----TRTIEPCRIAIKDAGIK--VSDINDIILVGGMTRMPKVQEKVKEFFGK------D--P 431 (945)
Q Consensus 370 itr~~~---e~~~~~~i-----~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~fg~------~--~ 431 (945)
+..+.| |-++.|.+ ..+.+++.+.+..+... ..-.+.|+|+||+|.+|.+.++|+..+.. + +
T Consensus 250 l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v 329 (375)
T PTZ00452 250 IKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQV 329 (375)
T ss_pred eehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEE
Confidence 666655 22333422 13456666666665432 12247899999999999999999877621 1 2
Q ss_pred CCCCCCCchhhhhHHHhhhh
Q psy2902 432 RRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 432 ~~~~~p~~avA~GAa~~a~~ 451 (945)
..+.++..++=+|++++|..
T Consensus 330 ~~~~~r~~~aW~GgSilasl 349 (375)
T PTZ00452 330 AAPPDRRFSAWIGGSIQCTL 349 (375)
T ss_pred ecCCCcceeEEECchhhcCc
Confidence 22345566778899998863
|
|
| >PRK15027 xylulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-11 Score=144.94 Aligned_cols=300 Identities=14% Similarity=0.103 Sum_probs=164.5
Q ss_pred CCCchhHHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeC-hhhHHHHHHHHHH-----HHHHHHhCCC
Q psy2902 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLA-PPQISAEVLRKMK-----KTAEDYLGGE 203 (945)
Q Consensus 130 ~~~~~i~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ev~a~~L~~l~-----~~a~~~~~~~ 203 (945)
.+....+...+++|.+.++|++.+...++.. ..+.+.+.+.|...+ ........+-.+. +.....++..
T Consensus 121 ~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~~~-----~~dyl~~~LTG~~~~d~s~as~t~l~d~~~~~w~~~ll~~~gi~ 195 (484)
T PRK15027 121 NLMMPGFTAPKLLWVQRHEPEIFRQIDKVLL-----PKDYLRLRMTGEFASDMSDAAGTMWLDVAKRDWSDVMLQACHLS 195 (484)
T ss_pred CCcCccchHHHHHHHHHhCHHHHHHhhhhcC-----hHHHHHhhhcCCccccHHHhhcccccccccCCCcHHHHHHhCCC
Confidence 3444455667888888888888776654321 123344444443222 1111111110000 0011112211
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHHHHHcCCc---cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEee
Q psy2902 204 ITEAVITVPAYFNDAQRQATKDAGRIAGLE---VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV 280 (945)
Q Consensus 204 ~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~---~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~ 280 (945)
.. .+.-+..-++.......++|+..||+ ++....+..|++++.+... ...+++-+|.+.+-..+..-...
T Consensus 196 ~~--~lP~v~~~~~~~G~l~~~~a~~~GL~~~pV~~g~~D~~aa~~g~g~~~-----~g~~~~s~GTs~~~~~~~~~~~~ 268 (484)
T PRK15027 196 RD--QMPALYEGSEITGALLPEVAKAWGMATVPVVAGGGDNAAGAVGVGMVD-----ANQAMLSLGTSGVYFAVSEGFLS 268 (484)
T ss_pred HH--HCCCCCCCccccccccHHHHHHhCCCCCeEEecccHHHHHHhccCccc-----CCcEEEEecCceEEEEecCCccc
Confidence 00 11111112333455567888888874 4455678999999887653 23344456666553333221000
Q ss_pred cCCceEEEEEe--cCCCC-CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceee
Q psy2902 281 DGEKQFEVLST--NGDTF-LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA 357 (945)
Q Consensus 281 ~~~~~~~vl~~--~~~~~-lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~ 357 (945)
.....+..... .+... .|+........+|+.+.+.. .. +..+.+.++++ .......+.+|++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~W~~~~~~~-------~~---~~~~~~~a~~~----~~g~~gl~~~P~l~ 334 (484)
T PRK15027 269 KPESAVHSFCHALPQRWHLMSVMLSAASCLDWAAKLTGL-------SN---VPALIAAAQQA----DESAEPVWFLPYLS 334 (484)
T ss_pred CchhceeecceecCCceEEEEEehhhHHHHHHHHHHhCC-------cc---HHHHHHHHhhC----CCCCCceEEecccc
Confidence 11111111111 11111 13333444556788776531 01 22333333322 22223445666664
Q ss_pred cc---------CCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC
Q psy2902 358 MS---------NGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG 428 (945)
Q Consensus 358 ~~---------~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg 428 (945)
.. .+...+++...++.+|.+.+-+.+......+.+.+++.+. .++.|+++||+++++.|.|++++.+|
T Consensus 335 G~r~P~~~~~arg~f~gl~~~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g 411 (484)
T PRK15027 335 GERTPHNNPQAKGVFFGLTHQHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISG 411 (484)
T ss_pred cCCCcCCCCCcceEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CccEEEEeCcccCCHHHHHHHHHHhC
Confidence 21 1223455667789999998888887777777777876554 36899999999999999999999999
Q ss_pred CCCCCCCCCCchhhhhHHHhhhhccCCCCc
Q psy2902 429 KDPRRDINPDEAVAVGAAIQGSVLSGDRKD 458 (945)
Q Consensus 429 ~~~~~~~~p~~avA~GAa~~a~~~~~~~~~ 458 (945)
.++....+.+++.|+|||++|+...|..++
T Consensus 412 ~pv~~~~~~~~~~a~GaA~lA~~~~G~~~~ 441 (484)
T PRK15027 412 QQLDYRTGGDVGPALGAARLAQIAANPEKS 441 (484)
T ss_pred CeEEeecCCCcchHHHHHHHHHHhcCCcCC
Confidence 999666667778899999999987764443
|
|
| >PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.7e-11 Score=136.43 Aligned_cols=309 Identities=16% Similarity=0.183 Sum_probs=181.1
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC----cEEecHHHHHhhhhCCCchhHHHHHhhCCCCCc
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG----EILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNE 148 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~----~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~ 148 (945)
.|-||+|+.++++++..+..|..+ +||.+....+. ...+|..+... .+.
T Consensus 6 ~vViD~Gs~~~k~G~age~~P~~v--------~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~---------------- 58 (393)
T PF00022_consen 6 PVVIDNGSSTIKAGFAGEDLPRVV--------IPSVVGRPRDKNSSNDYYVGDEALSP---RSN---------------- 58 (393)
T ss_dssp EEEEEECSSEEEEEETTSSS-SEE--------EESEEEEESSSSSSSSCEETHHHHHT---GTG----------------
T ss_pred EEEEECCCceEEEEECCCCCCCCc--------CCCccccccccccceeEEeecccccc---hhh----------------
Confidence 689999999999999876666554 37777765432 35667663321 000
Q ss_pred HHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH-
Q psy2902 149 KEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG- 227 (945)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa- 227 (945)
. .....+.+..+...+.+..++.++..... .....-..++++.|..++...|+.+.+.+
T Consensus 59 -----------~--------~~~~p~~~g~i~~~~~~e~i~~~~~~~~l-~~~~~~~~vll~~~~~~~~~~r~~l~e~lf 118 (393)
T PF00022_consen 59 -----------L--------ELRSPIENGVIVDWDALEEIWDYIFSNLL-KVDPSDHPVLLTEPPFNPRSQREKLAEILF 118 (393)
T ss_dssp -----------E--------EEEESEETTEESSHHHHHHHHHHHHHTTT--SSGGGSEEEEEESTT--HHHHHHHHHHHH
T ss_pred -----------e--------eeeeecccccccccccccccccccccccc-ccccccceeeeeccccCCchhhhhhhhhhh
Confidence 0 01122233344555666667777666431 12223456899999999999998886654
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+..+++.+.++.++.+|+++++... -||||+|.+.+.++-+.- +.. +........+||.+++..|.
T Consensus 119 E~~~~~~v~~~~~~~~a~~~~g~~t-------glVVD~G~~~t~v~pV~d------G~~-~~~~~~~~~~GG~~lt~~l~ 184 (393)
T PF00022_consen 119 EKFGVPSVYFIPSPLLALYASGRTT-------GLVVDIGYSSTSVVPVVD------GYV-LPHSIKRSPIGGDDLTEYLK 184 (393)
T ss_dssp HTS--SEEEEEEHHHHHHHHTTBSS-------EEEEEESSS-EEEEEEET------TEE--GGGBEEES-SHHHHHHHHH
T ss_pred cccccceeeeeeccccccccccccc-------ccccccceeeeeeeeeee------ccc-cccccccccccHHHHHHHHH
Confidence 5779999999999999999987653 699999999999988742 211 11111224679999999999
Q ss_pred HHHHHH-HHHHhCCCCc------cCHHHHHHHHHHHHHHHHHhcCCc---------------ceeeeeceeeccCCCCeE
Q psy2902 308 DYILDE-FNKINGIDLR------KDSIALQRIKASAERAKIELSSSK---------------QTEINEPYIAMSNGAPVH 365 (945)
Q Consensus 308 ~~l~~~-~~~~~~~~~~------~~~~~~~~L~~~~e~~K~~Ls~~~---------------~~~i~i~~~~~~~~~~~~ 365 (945)
++|..+ +.-....... ........-...++.+|+.+.... .....+| + .
T Consensus 185 ~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lP----d-----g 255 (393)
T PF00022_consen 185 ELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELP----D-----G 255 (393)
T ss_dssp HHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-T----T-----S
T ss_pred HHHHhhccccccccccccccccccccccchhhhccchhccchhhhcccccccccccccccccceecccc----c-----c
Confidence 888874 1110000000 001111112233444444432211 1112221 1 1
Q ss_pred EEEEEcHHHHHHHHHHHHH----------------HHHHHHHHHHHHcCCCCC--CCCcEEEecCccccHHHHHHHHHHh
Q psy2902 366 LNLKITRAKLELLVDELIT----------------RTIEPCRIAIKDAGIKVS--DINDIILVGGMTRMPKVQEKVKEFF 427 (945)
Q Consensus 366 ~~~~itr~~~e~~~~~~i~----------------~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~f 427 (945)
..+.+..+.| .+.+.+++ .+.++|.+++..+..+.. -.+.|+|+||+|++|.+.++|...+
T Consensus 256 ~~i~~~~er~-~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL 334 (393)
T PF00022_consen 256 QTIILGKERF-RIPEILFNPSLIGIDSASEPSEFMGLPELILDSISKCPIDLRKELLSNIVLTGGSSLIPGFKERLQQEL 334 (393)
T ss_dssp SEEEESTHHH-HHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHHTSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHH
T ss_pred cccccccccc-cccccccccccccccccccccccchhhhhhhhhhhccccccccccccceEEecccccccchHHHHHHHh
Confidence 2456665444 22333322 466778888877654322 1478999999999999999998877
Q ss_pred CC------C--CCCCC-CCCchhhhhHHHhhhhc
Q psy2902 428 GK------D--PRRDI-NPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 428 g~------~--~~~~~-~p~~avA~GAa~~a~~~ 452 (945)
.. . +.... +|..++=.||+++|..-
T Consensus 335 ~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~ 368 (393)
T PF00022_consen 335 RSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLS 368 (393)
T ss_dssp HHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSG
T ss_pred hhhhhccccceeccCchhhhhcccccceeeeccc
Confidence 32 1 22334 78899999999999754
|
These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B .... |
| >TIGR02628 fuculo_kin_coli L-fuculokinase | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.2e-12 Score=145.53 Aligned_cols=220 Identities=15% Similarity=0.132 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEee--cCCceEEEEE--
Q psy2902 219 QRQATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV--DGEKQFEVLS-- 290 (945)
Q Consensus 219 qr~~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~--~~~~~~~vl~-- 290 (945)
......++|+..|| +++....+..||+++.+.. .+. +++-+|.+ .+.+...... ..........
T Consensus 214 ~G~v~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~----~g~--~~~~~GTs--~~~~~~~~~~~~~~~~~~~~~~~~ 285 (465)
T TIGR02628 214 IGTLQNSAAAMLGLPVGVPVISAGHDTQFALFGSGAE----QNQ--PVLSSGTW--EILMARSQQVDTSLLSQYAGSTCE 285 (465)
T ss_pred ceeeCHHHHHHhCCCCCCCEEecCccHHHHHhccCCC----CCc--EEEeccch--hhheeccCcCCCCccccccccccc
Confidence 34455678888887 4566778888888887752 233 44455644 3322211100 0011110000
Q ss_pred --e-cCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceee-eeceee-ccCCCCeE
Q psy2902 291 --T-NGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEI-NEPYIA-MSNGAPVH 365 (945)
Q Consensus 291 --~-~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i-~i~~~~-~~~~~~~~ 365 (945)
. .+-...++..+.....+|+++.|... +. .+...+..|.+.++++ .......+ ..|.+. ...+...+
T Consensus 286 ~~~~~g~~~~~~~~~~g~~~~W~~~~~~~~---~~-~~~~~~~~l~~~a~~~----~~g~~gl~~~~p~~~~~a~g~~~G 357 (465)
T TIGR02628 286 LDSQAGLYNPAMQWLASGVLEWVRKLFFTA---ET-PSDHYYQMMIEEARLI----ANGADGVVNFQCDLLSCGQGGIQG 357 (465)
T ss_pred cccCCceeeehhhhhhhhHHHHHHHHhcch---hh-ccccHHHHHHHHHHhC----CCCCCcceeecccCCcccceeEEC
Confidence 0 00011122233344568888776310 00 0111234444444444 22222334 344442 22333456
Q ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhH
Q psy2902 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGA 445 (945)
Q Consensus 366 ~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GA 445 (945)
++...++.+|.+.+.+.+......+.+.+++.+.. .++.|.++||+++++.|.+++++.||.++.+..+ .++.++||
T Consensus 358 l~~~~~~~~l~rAvlEgia~~~r~~~e~l~~~~~~--~~~~i~~~GGga~s~~w~Qi~Adv~g~pV~~~~~-~e~~~lGa 434 (465)
T TIGR02628 358 LTLNTTRGHIYRAALEGLTAQLKRNLQMLEQIGQF--KASELLLVGGGSKNTLWNQIRANMLDIPVKVVDD-AETTVAGA 434 (465)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CcceEEEecCccCCHHHHHHhhhhcCCeeEeccC-CcchHHHH
Confidence 77788899999988888887777777888775321 3688999999999999999999999999975554 46889999
Q ss_pred HHhhhhccCCCC
Q psy2902 446 AIQGSVLSGDRK 457 (945)
Q Consensus 446 a~~a~~~~~~~~ 457 (945)
|+.|+...|..+
T Consensus 435 A~~a~~a~G~~~ 446 (465)
T TIGR02628 435 AMFGFYGVGEYN 446 (465)
T ss_pred HHHHHHhcCccC
Confidence 999998776433
|
Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon. |
| >PTZ00281 actin; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=9.8e-11 Score=131.82 Aligned_cols=303 Identities=14% Similarity=0.144 Sum_probs=180.3
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC---------cEEecHHHHHhhhhCCCchhHHHHHhhC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG---------EILVGAPAKRQAVTNPKNTIYAAKRLIG 143 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~llg 143 (945)
.|-||+|+.++++++..+..|..+. ||+|....+. ..++|.+|.... +
T Consensus 8 ~vViD~Gs~~~k~G~age~~P~~i~--------ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~---~------------ 64 (376)
T PTZ00281 8 ALVIDNGSGMCKAGFAGDDAPRAVF--------PSIVGRPRHTGVMVGMGQKDSYVGDEAQSKR---G------------ 64 (376)
T ss_pred eEEEECCCCeEEEeeCCCCCCCeec--------cccceeecCcccccCcccCCeEECchhhccc---c------------
Confidence 5889999999999998777776443 6666543221 233444432100 0
Q ss_pred CCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHH
Q psy2902 144 RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQAT 223 (945)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 223 (945)
.+ ....++.+..+...+.+..++.++..... .....-..+++|-|..+...+|+.|
T Consensus 65 ---------------~~--------~l~~Pi~~G~i~dwd~~e~l~~~~f~~~l-~v~p~~~pvllte~~~~~~~~re~l 120 (376)
T PTZ00281 65 ---------------IL--------TLKYPIEHGIVTNWDDMEKIWHHTFYNEL-RVAPEEHPVLLTEAPLNPKANREKM 120 (376)
T ss_pred ---------------Cc--------EEeccCcCCEEcCHHHHHHHHHHHHHhhc-cCCCccCeEEEecCCCCcHHHHHHH
Confidence 00 01122334455566666677777654211 1122234678899999999999988
Q ss_pred HHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHH
Q psy2902 224 KDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302 (945)
Q Consensus 224 ~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~i 302 (945)
.+. .+..+++.+.+..+|.+++++++. .+-+|||+|.+.+.++-+.-.. .+........+||.++
T Consensus 121 ~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~PV~dG~-------~~~~~~~~~~~GG~~l 186 (376)
T PTZ00281 121 TQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIVMDSGDGVSHTVPIYEGY-------ALPHAILRLDLAGRDL 186 (376)
T ss_pred HHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEEEECCCceEEEEEEEecc-------cchhheeeccCcHHHH
Confidence 774 577889999999999999998754 3569999999999988664211 1111222346899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc------------eeeeeceeeccCCCCeEEEEEE
Q psy2902 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ------------TEINEPYIAMSNGAPVHLNLKI 370 (945)
Q Consensus 303 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------------~~i~i~~~~~~~~~~~~~~~~i 370 (945)
++.|.+.|..+ +..+... . =...++.+|+.+..-.. ......+...+ +-.+.+
T Consensus 187 t~~L~~lL~~~-----~~~~~~~-~----~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPd-----g~~i~i 251 (376)
T PTZ00281 187 TDYMMKILTER-----GYSFTTT-A----EREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPD-----GQVITI 251 (376)
T ss_pred HHHHHHHHHhc-----CCCCCcH-H----HHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCC-----CCEEEe
Confidence 99998877543 1111110 0 02345666666543210 00001111111 123555
Q ss_pred cHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhC----C--C--CC
Q psy2902 371 TRAKL---ELLVDELI-----TRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFG----K--D--PR 432 (945)
Q Consensus 371 tr~~~---e~~~~~~i-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg----~--~--~~ 432 (945)
..+.| |-++.|.+ ..+.++|.+++..+.... .-.+.|+|+||+|.+|.+.++|+..+. . + +.
T Consensus 252 ~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~El~~~~p~~~~v~v~ 331 (376)
T PTZ00281 252 GNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKII 331 (376)
T ss_pred eHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCcCHHHHHHHHHHHhCCCCcceEEe
Confidence 55444 23344322 134566666666653321 124679999999999999999987772 1 1 22
Q ss_pred CCCCCCchhhhhHHHhhhh
Q psy2902 433 RDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 433 ~~~~p~~avA~GAa~~a~~ 451 (945)
.+.++..++=+||+++|..
T Consensus 332 ~~~~r~~~aW~Ggsilasl 350 (376)
T PTZ00281 332 APPERKYSVWIGGSILASL 350 (376)
T ss_pred cCCCCceeEEECcccccCc
Confidence 3446677888899998863
|
|
| >PRK10331 L-fuculokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-11 Score=141.62 Aligned_cols=216 Identities=15% Similarity=0.095 Sum_probs=129.3
Q ss_pred HHHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCC----ceEEEEEe-
Q psy2902 221 QATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGE----KQFEVLST- 291 (945)
Q Consensus 221 ~~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~----~~~~vl~~- 291 (945)
....++|...|| +++.-..+..||+++.+.. .+. +++-+|.+.+-..+..-...... +.......
T Consensus 217 ~v~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~----~g~--~~~~~GT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (470)
T PRK10331 217 TLQPSAAALLGLPVGIPVISAGHDTQFALFGSGAG----QNQ--PVLSSGTWEILMVRSAQVDTSLLSQYAGSTCELDSQ 290 (470)
T ss_pred ccCHHHHHHhCCCCCCeEEEccccHHHHHhCCCCC----CCC--EEEecchhhhheeecCCCcccccccccccceecccc
Confidence 445677777776 4566788889999988752 233 33345554432221110000000 11111111
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc-CCCCeEEEEEE
Q psy2902 292 NGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS-NGAPVHLNLKI 370 (945)
Q Consensus 292 ~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~-~~~~~~~~~~i 370 (945)
.+....++..+....++|+.+.|.. ....+..|.+.++++ .......+.+|.+... .+...+++...
T Consensus 291 ~~~~~~~~~~~~g~~~~W~~~~~~~--------~~~~y~~l~~~a~~~----~~g~~gl~~~p~~~g~~rg~~~Gl~~~~ 358 (470)
T PRK10331 291 SGLYNPGMQWLASGVLEWVRKLFWT--------AETPYQTMIEEARAI----PPGADGVKMQCDLLACQNAGWQGVTLNT 358 (470)
T ss_pred CceeeechhhHHHHHHHHHHHHhcc--------cCchHHHHHHHHhcC----CCCCCceEecccccccCceeEECCCCCc
Confidence 1111123434445577898887742 012234444544433 2223344556655422 23345666778
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 371 TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
+|.+|.+.+-+.+......+.+.|++.+. ..++.|.++||+++++.|.|++++.||.++.... ..+++|+|||+.|+
T Consensus 359 ~~~~l~rAvlEgia~~~~~~~~~l~~~~~--~~~~~i~~~GGga~s~~w~Qi~Advlg~pV~~~~-~~e~~a~GaA~la~ 435 (470)
T PRK10331 359 TRGHFYRAALEGLTAQLKRNLQVLEKIGH--FKASELLLVGGGSRNALWNQIKANMLDIPIKVLD-DAETTVAGAAMFGW 435 (470)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCceEEEEcccccCHHHHHHHHHhcCCeeEecC-cccchHHHHHHHHH
Confidence 99999888887777666666677766432 2368999999999999999999999999997555 45688999999999
Q ss_pred hccCCCC
Q psy2902 451 VLSGDRK 457 (945)
Q Consensus 451 ~~~~~~~ 457 (945)
...|..+
T Consensus 436 ~~~G~~~ 442 (470)
T PRK10331 436 YGVGEFS 442 (470)
T ss_pred HhcCCCC
Confidence 7766433
|
|
| >PTZ00004 actin-2; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.1e-10 Score=128.03 Aligned_cols=301 Identities=15% Similarity=0.119 Sum_probs=179.7
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC---------cEEecHHHHHhhhhCCCchhHHHHHhhC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG---------EILVGAPAKRQAVTNPKNTIYAAKRLIG 143 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~---------~~~~G~~A~~~~~~~~~~~i~~~k~llg 143 (945)
.|-||+||.++++++..++.|..+ +||++....+. ..++|.++... ...
T Consensus 8 ~vViD~Gs~~~k~G~ag~~~P~~~--------~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~-----~~~--------- 65 (378)
T PTZ00004 8 AAVVDNGSGMVKAGFAGDDAPRCV--------FPSIVGRPKNPGIMVGMEEKDCYVGDEAQDK-----RGI--------- 65 (378)
T ss_pred eEEEECCCCeEEEeeCCCCCCCEE--------ccceeEEecccccccCcCCCceEECchhhcc-----ccc---------
Confidence 589999999999999877766544 37776654321 23445443210 000
Q ss_pred CCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhC--CCCCcEEEEcCCCCCHHHHH
Q psy2902 144 RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLG--GEITEAVITVPAYFNDAQRQ 221 (945)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~ 221 (945)
-....++.+..+...+....++.++... .+. ..-..+++|.|..++..+|+
T Consensus 66 ------------------------~~l~~Pi~~G~i~d~d~~e~i~~~~~~~---~l~v~~~~~pvllte~~~~~~~~r~ 118 (378)
T PTZ00004 66 ------------------------LTLKYPIEHGIVTNWDDMEKIWHHTFYN---ELRVAPEEHPVLLTEAPLNPKANRE 118 (378)
T ss_pred ------------------------ceEcccCcCCEEcCHHHHHHHHHHHHHh---hcccCCccCcceeecCCCCcHHHHH
Confidence 0011223344455667777777775432 222 22346788999999999998
Q ss_pred HHHHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchH
Q psy2902 222 ATKDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300 (945)
Q Consensus 222 ~l~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~ 300 (945)
.+.+. .+..+++.+.++.+|.+|+++++. .+-+|+|+|.+.++++-+.- +..- .....-.++||.
T Consensus 119 ~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~tglVVDiG~~~t~v~pV~d------G~~l-~~~~~~~~~GG~ 184 (378)
T PTZ00004 119 KMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVSHTVPIYE------GYSL-PHAIHRLDVAGR 184 (378)
T ss_pred HHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ceEEEEECCCCcEEEEEEEC------CEEe-ecceeeecccHH
Confidence 77555 567899999999999999998754 35699999999999987742 2111 112223468999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc-------------eeeeeceeeccCCCCeEEE
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ-------------TEINEPYIAMSNGAPVHLN 367 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-------------~~i~i~~~~~~~~~~~~~~ 367 (945)
++|+.|.+.+..+- ..+... . -...++.+|+.+..... ......+...+ +-.
T Consensus 185 ~lt~~L~~lL~~~~-----~~~~~~--~---~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~~y~lPd-----g~~ 249 (378)
T PTZ00004 185 DLTEYMMKILHERG-----TTFTTT--A---EKEIVRDIKEKLCYIALDFDEEMGNSAGSSDKYEESYELPD-----GTI 249 (378)
T ss_pred HHHHHHHHHHHhcC-----CCCCcH--H---HHHHHHHHhhcceeecCCHHHHHhhhhcCccccceEEECCC-----CCE
Confidence 99999998875431 111111 0 12234555555432110 00011111111 123
Q ss_pred EEEcHHHH---HHHHHHH------HHHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhCC-------
Q psy2902 368 LKITRAKL---ELLVDEL------ITRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFGK------- 429 (945)
Q Consensus 368 ~~itr~~~---e~~~~~~------i~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg~------- 429 (945)
+.+..+.| |-++.|. ...+.++|.+++..+..+. .-...|+|+||+|.+|.+.++|...+..
T Consensus 250 i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~Gf~~RL~~EL~~~~p~~~~ 329 (378)
T PTZ00004 250 ITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMK 329 (378)
T ss_pred EEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhcCcCHHHHHHHHHHHhCCCCcc
Confidence 45555544 2344442 2244566777776654321 1246799999999999999999887731
Q ss_pred -CCCCCCCCCchhhhhHHHhhhh
Q psy2902 430 -DPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 430 -~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.+....++..++=+||+++|..
T Consensus 330 ~~v~~~~~~~~~aW~Ggsilas~ 352 (378)
T PTZ00004 330 IKVVAPPERKYSVWIGGSILSSL 352 (378)
T ss_pred EEEecCCCCceeEEECcccccCc
Confidence 1223446677888899888863
|
|
| >PTZ00466 actin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-10 Score=126.69 Aligned_cols=302 Identities=17% Similarity=0.136 Sum_probs=181.2
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC---------CcEEecHHHHHhhhhCCCchhHHHHHhhC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN---------GEILVGAPAKRQAVTNPKNTIYAAKRLIG 143 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~k~llg 143 (945)
.|-||+||.++++++..+..|.++ +||++..... +..++|.+|.... .
T Consensus 14 ~iViD~GS~~~K~G~ag~~~P~~~--------~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~--~------------- 70 (380)
T PTZ00466 14 PIIIDNGTGYIKAGFAGEDVPNLV--------FPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYR--G------------- 70 (380)
T ss_pred eEEEECCCCcEEEeeCCCCCCCEe--------ccceeeeecCccccccCCCCCeEECchhhhhC--c-------------
Confidence 488999999999999977777654 3666655322 1234454442110 0
Q ss_pred CCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHH
Q psy2902 144 RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQAT 223 (945)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 223 (945)
.-....++....+...+.+..++.++.+... ....-..+++|-|..++..+|+.+
T Consensus 71 -----------------------~~~l~~Pi~~G~v~dwd~~e~iw~~~f~~l~--v~~~~~pvllte~~~~~~~~re~~ 125 (380)
T PTZ00466 71 -----------------------LLKVTYPINHGIIENWNDMENIWIHVYNSMK--INSEEHPVLLTEAPLNPQKNKEKI 125 (380)
T ss_pred -----------------------CceeCccccCCeECCHHHHHHHHHHHHhhcc--cCCccCeEEEecCccccHHHHHHH
Confidence 0001223344456677777777887764321 122234678899999999999988
Q ss_pred HHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHH
Q psy2902 224 KDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302 (945)
Q Consensus 224 ~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~i 302 (945)
.+. .+..+++.+.+..+|.+|+++++. .+-+|||+|.+.+.++-+.- +.. +........+||.++
T Consensus 126 ~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tglVVD~G~~~t~v~PV~~------G~~-~~~~~~~~~~GG~~l 191 (380)
T PTZ00466 126 AEVFFETFNVPALFISIQAILSLYSCGK-------TNGTVLDCGDGVCHCVSIYE------GYS-ITNTITRTDVAGRDI 191 (380)
T ss_pred HHHHhccCCCCeEEEecchHHHHHhcCC-------ceEEEEeCCCCceEEEEEEC------CEE-eecceeEecCchhHH
Confidence 665 466788889999999999998754 35799999999999986642 211 111222246899999
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc-----------eeeeeceeeccCCCCeEEEEEEc
Q psy2902 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ-----------TEINEPYIAMSNGAPVHLNLKIT 371 (945)
Q Consensus 303 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------~~i~i~~~~~~~~~~~~~~~~it 371 (945)
++.|.+.+.+. +..... . .-.+.++.+|+.+..-.. .....++...+ +..+.+.
T Consensus 192 t~~L~~lL~~~-----~~~~~~-~----~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPd-----g~~i~l~ 256 (380)
T PTZ00466 192 TTYLGYLLRKN-----GHLFNT-S----AEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPD-----GSQILIG 256 (380)
T ss_pred HHHHHHHHHhc-----CCCCCc-H----HHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCC-----CcEEEEc
Confidence 99998877542 111110 0 113345556665432110 00001111111 2345666
Q ss_pred HHHH---HHHHHHHH-----HHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhCC----C----CCC
Q psy2902 372 RAKL---ELLVDELI-----TRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFGK----D----PRR 433 (945)
Q Consensus 372 r~~~---e~~~~~~i-----~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg~----~----~~~ 433 (945)
.+.| |-++.|.+ ..+.++|.+.+..+..+. .-...|+|+||+|.+|.+.++|...+.. . +..
T Consensus 257 ~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~EL~~l~p~~~~v~v~~ 336 (380)
T PTZ00466 257 SERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISA 336 (380)
T ss_pred hHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccCCHHHHHHHHHHHhCCCCceEEEec
Confidence 6555 23333321 134556666666654321 1247899999999999999999887721 1 222
Q ss_pred CCCCCchhhhhHHHhhhh
Q psy2902 434 DINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 434 ~~~p~~avA~GAa~~a~~ 451 (945)
..++..++=+||+++|..
T Consensus 337 ~~~r~~~aW~GgSilasl 354 (380)
T PTZ00466 337 PPERKFSTFIGGSILASL 354 (380)
T ss_pred CCCCceeEEECchhhcCc
Confidence 345666777899988863
|
|
| >TIGR01175 pilM type IV pilus assembly protein PilM | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-09 Score=119.80 Aligned_cols=180 Identities=15% Similarity=0.196 Sum_probs=121.1
Q ss_pred CHHHHHHHHHHHHHcCCccceecchhHHHHHHhc-----cCCCCCCCc-eEEEEEeCCcceEEEEEEEEeecCCceEEEE
Q psy2902 216 NDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG-----LDKSGKSDR-NIVVYDLGGGTFDVSIIEIADVDGEKQFEVL 289 (945)
Q Consensus 216 ~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~-----~~~~~~~~~-~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl 289 (945)
.....+.+.++++.||++...+..+|.|.+-.+. .... .... .++++|+|+++++++++.- +.+..
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~l~i~~~------g~~~~- 212 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASR-TYRLTDAALVDIGATSSTLNLLHP------GRMLF- 212 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccc-cccCceEEEEEECCCcEEEEEEEC------CeEEE-
Confidence 3566788899999999999999999999876663 1111 2233 4999999999999999963 22221
Q ss_pred EecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEE
Q psy2902 290 STNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369 (945)
Q Consensus 290 ~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~ 369 (945)
.....+||.++++.+.+.+ +.+ .++||+.|....... .
T Consensus 213 --~r~i~~G~~~i~~~i~~~~--------~~~-----------~~~Ae~~k~~~~~~~-----------------~---- 250 (348)
T TIGR01175 213 --TREVPFGTRQLTSELSRAY--------GLN-----------PEEAGEAKQQGGLPL-----------------L---- 250 (348)
T ss_pred --EEEeechHHHHHHHHHHHc--------CCC-----------HHHHHHHHhcCCCCC-----------------c----
Confidence 1234569999998886432 222 456788876432110 0
Q ss_pred EcHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCC-------------
Q psy2902 370 ITRAKLELLVDELITRTIEPCRIAIKDA--GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRD------------- 434 (945)
Q Consensus 370 itr~~~e~~~~~~i~~i~~~i~~~l~~~--~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~------------- 434 (945)
.-.+++++.++++...|.+.|+-. ......++.|+|+||+++++.+.+.+++.|+.++...
T Consensus 251 ----~~~~~~~~~~~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl~~~l~~~l~~~v~~~~P~~~~~~~~~~~ 326 (348)
T TIGR01175 251 ----YDPEVLRRFKGELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGLDAAIYQRLGLPTEVANPFALMALDAKVD 326 (348)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhHHHHHHHHHCCCeEecChHHhcccCccCC
Confidence 012345666666666677776532 2223358999999999999999999999998665321
Q ss_pred ------CCCCchhhhhHHHhh
Q psy2902 435 ------INPDEAVAVGAAIQG 449 (945)
Q Consensus 435 ------~~p~~avA~GAa~~a 449 (945)
.+|..++|.|+|+++
T Consensus 327 ~~~~~~~~~~~~~a~Glalr~ 347 (348)
T TIGR01175 327 AGRLAVDAPALMTALGLALRG 347 (348)
T ss_pred HHHHHhhhHHHHHHhhHhhcC
Confidence 234557777777664
|
This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria. |
| >TIGR01314 gntK_FGGY gluconate kinase, FGGY type | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.5e-10 Score=136.19 Aligned_cols=223 Identities=15% Similarity=0.156 Sum_probs=120.3
Q ss_pred HHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCC-C
Q psy2902 222 ATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDT-F 296 (945)
Q Consensus 222 ~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~-~ 296 (945)
...++|+..|| +++....+..|++++.+... ++ .+++-+|.+.+-..+..-.........-......+. .
T Consensus 215 l~~~~a~~~GL~~g~pV~~g~~D~~aa~~g~g~~~---~g--~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (505)
T TIGR01314 215 LPHEYAKKMGIQSSTPFVIGASDGVLSNLGVNAIK---KG--EAAVTIGTSGAIRTVIDKPKTDEKGRIFCYALTKEHWV 289 (505)
T ss_pred cCHHHHHHhCCCCCCeEEEeccHHHHHHhcCCCCC---CC--cEEEEechhheeeeccCcCccCCCCceEEEEecCCcEE
Confidence 34567777776 46667888888888887643 22 233345555442222211011111111000011010 1
Q ss_pred Cch-HHHHHHHHHHHHHHHHHHhCCC-CccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeE
Q psy2902 297 LGG-EDFDQRIIDYILDEFNKINGID-LRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVH 365 (945)
Q Consensus 297 lGG-~~iD~~l~~~l~~~~~~~~~~~-~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~ 365 (945)
++| ..--..+++|+.+.+....... .......+..|.+.++++ .......+.+|++.... +...+
T Consensus 290 ~~~~~~~~g~~~~W~~~~~~~~~~~~~~~~~~~~y~~l~~~a~~~----~~g~~gl~~~P~l~G~r~P~~~~~~rg~f~G 365 (505)
T TIGR01314 290 IGGPVNNGGDVLRWARDEIFDSEIETATRLGIDPYDVLTEIAARV----SPGADGLLFHPYLAGERAPLWNANARGSFFG 365 (505)
T ss_pred EEeeecchHhHHHHHHHHhhhhhhhhhhhcCCCHHHHHHHHHhhC----CCCCCceEEecccccCCCCCCCCCccEEEEC
Confidence 111 1112234567776653211000 000011234444444333 22223456666654211 11234
Q ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhh
Q psy2902 366 LNLKITRAKLELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVG 444 (945)
Q Consensus 366 ~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~G 444 (945)
++...++++|-+.+-+.+..-...+.+.+.+ .+. .++.|.++||+++++.|.+++++.||.++.+..+ .++.|+|
T Consensus 366 l~~~~~~~~l~rAvlEgia~~~~~~~~~~~~~~g~---~~~~i~~~GGga~s~~w~Qi~Adv~g~pv~~~~~-~e~~a~G 441 (505)
T TIGR01314 366 LTYSHKKEHMIRAALEGVIYNLYTVALALVEVMGD---PLNMIQATGGFASSEVWRQMMSDIFEQEIVVPES-YESSCLG 441 (505)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecCcccCHHHHHHHHHHcCCeeEecCC-CCcchHH
Confidence 4566688888877766665554444444443 443 4789999999999999999999999999976554 4688999
Q ss_pred HHHhhhhccCCCC
Q psy2902 445 AAIQGSVLSGDRK 457 (945)
Q Consensus 445 Aa~~a~~~~~~~~ 457 (945)
||++|+...|..+
T Consensus 442 aA~la~~~~G~~~ 454 (505)
T TIGR01314 442 ACILGLKALGLIE 454 (505)
T ss_pred HHHHHHHhcCccC
Confidence 9999998776433
|
Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway. |
| >PRK00047 glpK glycerol kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.6e-10 Score=129.92 Aligned_cols=205 Identities=16% Similarity=0.123 Sum_probs=122.7
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEE-eecCCceEEEEEe-cCC----CCCchHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIA-DVDGEKQFEVLST-NGD----TFLGGEDFD 303 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~-~~~~~~~~~vl~~-~~~----~~lGG~~iD 303 (945)
+|++++....+..|++++.+.... +..+++ +|.+++-..+..-. .......+..... ..+ ...|+....
T Consensus 236 ~g~pV~~g~~D~~aa~~G~G~~~~---g~~~~~--~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 310 (498)
T PRK00047 236 GEVPIAGIAGDQQAALFGQLCFEP---GMAKNT--YGTGCFMLMNTGEKAVKSENGLLTTIAWGIDGKVVYALEGSIFVA 310 (498)
T ss_pred CCceEEEEccHHHHHHHhCcCCCC---CceEEe--eccceEEEEecCCccccCCCCceeEEEEEcCCCcEEEEEeeHhhH
Confidence 577888888899999998876542 333332 45543322222000 1111111221111 111 123555556
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEcHHH
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKITRAK 374 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~itr~~ 374 (945)
..+++|+.+.+.. . .. ...+.+.++.. . .....+.+|++... .+...+++...+|.+
T Consensus 311 g~~l~W~~~~~~~----~--~~---~~~~~~~a~~~----~-~~~gl~~lP~l~G~r~P~~d~~arg~~~Gl~~~~~~~~ 376 (498)
T PRK00047 311 GSAIQWLRDGLKI----I--SD---ASDSEALARKV----E-DNDGVYVVPAFTGLGAPYWDSDARGAIFGLTRGTTKEH 376 (498)
T ss_pred HHHHHHHHHHhcC----C--CC---HHHHHHHHhcC----C-CCCCEEEeCccccCCCCCCCCCCcEEEECCCCCCCHHH
Confidence 6678999888741 0 11 11222222221 2 22345677876511 112334566778988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 375 LELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
+-+.+-+.+..-...+.+.|++ .+. .++.|.++||+++++.|.|++++.||.++.... ..++.|+|||+.|+...
T Consensus 377 l~rAvlEgia~~~r~~~e~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~-~~e~~a~GaA~~A~~~~ 452 (498)
T PRK00047 377 IIRATLESIAYQTRDVLDAMQADSGI---RLKELRVDGGAVANNFLMQFQADILGVPVERPV-VAETTALGAAYLAGLAV 452 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEecCcccCHHHHHHHHHhhCCeeEecC-cccchHHHHHHHHhhhc
Confidence 8887777776666666677764 344 368999999999999999999999999997544 45788999999999877
Q ss_pred CCCC
Q psy2902 454 GDRK 457 (945)
Q Consensus 454 ~~~~ 457 (945)
|..+
T Consensus 453 G~~~ 456 (498)
T PRK00047 453 GFWK 456 (498)
T ss_pred CcCC
Confidence 6433
|
|
| >PTZ00294 glycerol kinase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-09 Score=127.61 Aligned_cols=207 Identities=19% Similarity=0.222 Sum_probs=122.2
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEE-eecCCceEEEEEecC--C-----CCCchH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIA-DVDGEKQFEVLSTNG--D-----TFLGGE 300 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~-~~~~~~~~~vl~~~~--~-----~~lGG~ 300 (945)
..|++++....+..||+++.+... .+. ++.-+|.+++-+..+.-. .......+....... + ...|+.
T Consensus 236 ~~g~pV~~g~~D~~aa~~G~g~~~---~g~--~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (504)
T PTZ00294 236 LEGVPITGCIGDQQAALIGHGCFE---KGD--AKNTYGTGCFLLMNTGTEIVFSKHGLLTTVCYQLGPNGPTVYALEGSI 310 (504)
T ss_pred CCCCcEEEEecHHHHHHHhCcCCC---CCc--eEEeeccceEEEEeeCCccccCCCCceEEEEEEecCCCCcEEEEechh
Confidence 457788888889999999987643 122 223345543321211100 111122222222111 1 122444
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEc
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKIT 371 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~it 371 (945)
..-...++|+++.+.. ..+ ...+.+.++++ . .....+.+|++... .+...+++...+
T Consensus 311 ~~~g~~~~W~~~~~~~------~~~---~~~~~~~a~~~----~-g~~gl~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~ 376 (504)
T PTZ00294 311 AVAGAGVEWLRDNMGL------ISH---PSEIEKLARSV----K-DTGGVVFVPAFSGLFAPYWRPDARGTIVGMTLKTT 376 (504)
T ss_pred hhhHHHHHHHHHHhCC------CCC---HHHHHHHHHhC----C-CCCCEEEeCcccCCCCCCCCCCCCEEEEccCCCCC
Confidence 4455667898887631 111 12233333332 1 22344666766411 122235556678
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
+.+|-+.+-+.+......+.+.+++ .+. .++.|+++||+++++.|.+++++.||.++.... ..++.|+|||++|+
T Consensus 377 ~~~i~rAvlEgia~~~r~~~~~l~~~~g~---~~~~i~~~GG~a~s~~w~Qi~Adv~g~pV~~~~-~~e~~alGaAl~aa 452 (504)
T PTZ00294 377 RAHIVRAALEAIALQTNDVIESMEKDAGI---ELNSLRVDGGLTKNKLLMQFQADILGKDIVVPE-MAETTALGAALLAG 452 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcceEEEecccccCHHHHHHHHHHhCCceEecC-cccchHHHHHHHHH
Confidence 8988887777666666555566665 344 268999999999999999999999999997555 55688999999999
Q ss_pred hccCCCCc
Q psy2902 451 VLSGDRKD 458 (945)
Q Consensus 451 ~~~~~~~~ 458 (945)
...|..++
T Consensus 453 ~a~G~~~~ 460 (504)
T PTZ00294 453 LAVGVWKS 460 (504)
T ss_pred hhcCccCC
Confidence 87774443
|
|
| >PLN02295 glycerol kinase | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-10 Score=130.10 Aligned_cols=204 Identities=16% Similarity=0.154 Sum_probs=122.1
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEE--eecCCceEEEEEec------C-CCCCchH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIA--DVDGEKQFEVLSTN------G-DTFLGGE 300 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~--~~~~~~~~~vl~~~------~-~~~lGG~ 300 (945)
.|++++....+..|++++.+. .. +.. ++-+|.+.+ +.+..-. .......+..+... + -...|+.
T Consensus 239 ~g~pV~~g~~D~~aa~~G~G~-~~---g~~--~~~~GTs~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 311 (512)
T PLN02295 239 AGVPIAGCLGDQHAAMLGQRC-RP---GEA--KSTYGTGCF-ILLNTGEEVVPSKHGLLTTVAYKLGPDAPTNYALEGSV 311 (512)
T ss_pred CCCcEEEEechHHHHHhhCcC-CC---CCe--EEEEcccce-eeeecCCccccCCCCceEEEEEEecCCCCceEEEechh
Confidence 489988889999999999877 32 332 333554432 1111100 00111222222211 0 1123455
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEc
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKIT 371 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~it 371 (945)
..-...++|+++.+.. . .+ ...+.+.++++ . .....+.+|++... .+...+++...+
T Consensus 312 ~~~G~~~~W~~~~~~~----~--~~---~~~~~~~a~~~----~-g~~gl~f~P~l~G~r~P~~~~~arg~~~Gl~~~~~ 377 (512)
T PLN02295 312 AIAGAAVQWLRDNLGI----I--KS---ASEIEALAATV----D-DTGGVYFVPAFSGLFAPRWRDDARGVCVGITRFTN 377 (512)
T ss_pred hhhHHHHHHHHHHcCC----C--CC---HHHHHHHHHhC----C-CCCceEEeCcccCCCCCcCCCCCCEEEECCCCCCC
Confidence 5555667899887741 1 11 11222222222 1 22234677776411 112234556778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CC--CCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHh
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDA-GI--KVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~-~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~ 448 (945)
+.+|-+.+-+.+..-...+.+.|++. +. ....++.|.++||+++++.|.|++++.||.++.... ..++.|+|||+.
T Consensus 378 ~~~l~RAvlEgia~~~r~~l~~l~~~~~~~~~~~~~~~i~~~GGga~s~~w~Qi~ADv~g~pV~~~~-~~e~~alGaA~~ 456 (512)
T PLN02295 378 KAHIARAVLESMCFQVKDVLDAMRKDAGEEKSHKGLFLLRVDGGATANNLLMQIQADLLGSPVVRPA-DIETTALGAAYA 456 (512)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccCCCcceEEEeccchhCHHHHHHHHHhcCCceEecC-ccccHHHHHHHH
Confidence 99998888777777666666777654 22 122478899999999999999999999999997544 457889999999
Q ss_pred hhhccCC
Q psy2902 449 GSVLSGD 455 (945)
Q Consensus 449 a~~~~~~ 455 (945)
|+...|.
T Consensus 457 A~~~~G~ 463 (512)
T PLN02295 457 AGLAVGL 463 (512)
T ss_pred HHhhcCc
Confidence 9877764
|
|
| >TIGR03739 PRTRC_D PRTRC system protein D | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.3e-09 Score=116.83 Aligned_cols=206 Identities=21% Similarity=0.200 Sum_probs=126.3
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHc---------CCccceecchhHHHHHHhccCCC--CCCCceEEEEEeCCcceE
Q psy2902 203 EITEAVITVPAYFNDAQRQATKDAGRIA---------GLEVKRIINEPTAAALAFGLDKS--GKSDRNIVVYDLGGGTFD 271 (945)
Q Consensus 203 ~~~~~VitVPa~~~~~qr~~l~~Aa~~A---------Gl~~v~li~Ep~AAAl~~~~~~~--~~~~~~vlVvD~GggT~d 271 (945)
.+..+|+..|..+-..+++.+++..... -+..+.+++||.+|.+.+..+.. ......++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 3567999999999888999998876532 23557789999999887765321 125677899999999999
Q ss_pred EEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceee
Q psy2902 272 VSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEI 351 (945)
Q Consensus 272 vsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i 351 (945)
+.++. +..+ +....+....|..++-+.+.+.+.+++. .+...+.. ..+++ |.......+
T Consensus 181 ~~~~~------~~~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g----~~~~~~~~-------~i~~~---l~~g~~~~~ 239 (320)
T TIGR03739 181 WLVAR------GMRL-VQKRSGSVNGGMSDIYRLLAAEISKDIG----TPAYRDID-------RIDLA---LRTGKQPRI 239 (320)
T ss_pred eehcc------CCEE-cccccCCchhHHHHHHHHHHHHHHhhcC----CCCccCHH-------HHHHH---HHhCCceee
Confidence 98764 2333 3334444566877777777777666553 22101111 11211 111110000
Q ss_pred eeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCC-
Q psy2902 352 NEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD- 430 (945)
Q Consensus 352 ~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~- 430 (945)
. .-.+.++ +..+.....++.+...+...+. ...+++.|+|+||++. .+++.|++.|+..
T Consensus 240 --------~----gk~~di~--~~~~~~~~~~~~~v~~i~~~~~----~~~~~~~Iil~GGGa~--ll~~~l~~~f~~~~ 299 (320)
T TIGR03739 240 --------Y----QKPVDIK--RCLELAETVAQQAVSTMMTWIG----APESIQNIVLVGGGAF--LFKKAVKAAFPKHR 299 (320)
T ss_pred --------c----ceecCch--HHHHHHHHHHHHHHHHHHHhcc----cCCcccEEEEeCCcHH--HHHHHHHHHCCCCe
Confidence 0 0012222 2222333334444333333331 1245889999999996 6689999999763
Q ss_pred CCCCCCCCchhhhhHHHhh
Q psy2902 431 PRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 431 ~~~~~~p~~avA~GAa~~a 449 (945)
+....||..|.|+|-..+|
T Consensus 300 i~~~~dp~~ANarG~~~~g 318 (320)
T TIGR03739 300 IVEVDEPMFANVRGFQIAG 318 (320)
T ss_pred eEecCCcHHHHHHHHHHhh
Confidence 3457889999999988766
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region. |
| >COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.9e-10 Score=130.42 Aligned_cols=217 Identities=19% Similarity=0.183 Sum_probs=125.6
Q ss_pred CHHHHHHHHHHHHHcCCc----cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe
Q psy2902 216 NDAQRQATKDAGRIAGLE----VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST 291 (945)
Q Consensus 216 ~~~qr~~l~~Aa~~AGl~----~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~ 291 (945)
++.......++|+..||+ ++....+..|++++.+.... +. ++.=+|...+-.++... ...+........
T Consensus 216 g~~~G~l~~e~A~~~Gl~~~~pV~~G~~D~~~a~lg~g~~~~---g~--~~~~~gts~~~~~~~~~--~~~~~~~~~~~~ 288 (502)
T COG1070 216 GEVLGTLTPEAAEELGLPAGTPVVVGGGDNAAAALGAGAVDP---GD--VSSSTGTSGVVRAATDK--PLDDPRGSIYTF 288 (502)
T ss_pred cceeccccHHHHHHhCCCCCCeEEECCchHHHHhccCCCcCC---Cc--EEEEeccccEEeeeccc--cccCCccceeee
Confidence 344455667889999983 45567899999999887763 22 44444444333333321 011111111111
Q ss_pred ----cCC-CCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC------
Q psy2902 292 ----NGD-TFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN------ 360 (945)
Q Consensus 292 ----~~~-~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~------ 360 (945)
.+. ...|+...-....+|+.+.+.... ....+...+.. ..........+..|++....
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~l~w~~~~~~~~~---------~~~~~~~~~~~--~~~~~~~~~l~f~p~l~~er~p~~~~ 357 (502)
T COG1070 289 CLGLPGWFIVMGANNTGGWLLEWLRELFGLAE---------SYPELLEEALA--VPAPAGAIGLLFLPYLSGERGPHADP 357 (502)
T ss_pred cccCCCeEEEEEEecccHHHHHHHHHHhcccc---------CcHHHHHHHHh--ccCCCCCCCcEEeccccCCcCCCCCc
Confidence 111 123555555566778877765421 01111111111 11112223446666664211
Q ss_pred ---CCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCC
Q psy2902 361 ---GAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDIN 436 (945)
Q Consensus 361 ---~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~ 436 (945)
+.........++.+|.+.+.+.+........+.|.+. +.. ++.|.++||+|+++.|.+++++.+|.++..+..
T Consensus 358 ~~r~~~~g~~~~~~~~~l~ravlEgva~~l~~~~~~l~~~~g~~---~~~i~~~GGgars~~w~Qi~Ad~~g~~v~~~~~ 434 (502)
T COG1070 358 AARGGFVGLTLPHTRAHLARAVLEGVAFALADGLEALEELGGKP---PSRVRVVGGGARSPLWLQILADALGLPVVVPEV 434 (502)
T ss_pred cceeEEEccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---ccEEEEECCcccCHHHHHHHHHHcCCeeEecCc
Confidence 1123444667899999888888877777777777776 433 578999999999999999999999999985543
Q ss_pred CCchhhhhHHHhhhhccC
Q psy2902 437 PDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 437 p~~avA~GAa~~a~~~~~ 454 (945)
.|+.+.|+|+.++...+
T Consensus 435 -~e~~a~g~A~~~~~~~~ 451 (502)
T COG1070 435 -EEAGALGGAALAAAALG 451 (502)
T ss_pred -ccchHHHHHHHHHHHhC
Confidence 45555555555554443
|
|
| >TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-10 Score=134.69 Aligned_cols=316 Identities=14% Similarity=0.083 Sum_probs=161.3
Q ss_pred hhCCCchhHHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeC-hhhHHH-HHHH-----H--HHHHHHH
Q psy2902 128 VTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLA-PPQISA-EVLR-----K--MKKTAED 198 (945)
Q Consensus 128 ~~~~~~~i~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ev~a-~~L~-----~--l~~~a~~ 198 (945)
...+-...+.+.+++|.+.++|++.+....+. ...+++.+.+.|...+ ...... .++. . .-+...+
T Consensus 129 tG~~~~~~~~~~kl~Wl~~~~Pe~~~~~~~~l-----~~~dyl~~~LTG~~~~d~~~as~~~~~d~~d~~~~~W~~ell~ 203 (541)
T TIGR01315 129 VGGKMSVEMEIPKVLWLKNNMPPELFARCKFF-----DLTDFLTWRATGKEIRSFCSVVCKWGFVPVDGSNKGWQEDFYE 203 (541)
T ss_pred hCCeeCcchhHHHHHHHHHhChHHHHHhhhhc-----chhhhheeeeecchhHhHhHHhHhhhccccccccCCCCHHHHH
Confidence 34455566677888898888888877665432 2345677778775432 222221 1111 0 0111122
Q ss_pred HhCCCCCcE---EEE--cCCCC--CHHHHH-HHHHHHHHcCC----ccceecchhHHHHHHhcc---CCCCCCC--ceEE
Q psy2902 199 YLGGEITEA---VIT--VPAYF--NDAQRQ-ATKDAGRIAGL----EVKRIINEPTAAALAFGL---DKSGKSD--RNIV 261 (945)
Q Consensus 199 ~~~~~~~~~---Vit--VPa~~--~~~qr~-~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~---~~~~~~~--~~vl 261 (945)
.++.+ .. -+. .|... ++.... ...++|+..|| +++....+..|++++.+. ....... ...+
T Consensus 204 ~~Gi~--~~~~~~l~~~lp~i~~~~~~~G~~v~~~~A~~~GL~~g~pV~~g~~D~~aa~lG~g~~~~~~~g~~~~~~~~~ 281 (541)
T TIGR01315 204 TIGLG--ELVTDNFIRMGGSWMSPGELVGGGLTAEAAQELGLPAGTAVGSGLIDAHAGWIGTVGAKVAENGDVSQAFTRL 281 (541)
T ss_pred HcCCh--hhhhccccccCCcccCCCcccccccCHHHHHHhCCCCCCeEeechHhhhccccccccccccccccccCCCCcE
Confidence 22222 10 010 01111 222334 55688888877 456677888888887743 2210000 1123
Q ss_pred EEEeCCcceEEEEEEEEeecCCceEEEE-Ee--cCC-CCCchHHHHHHHHHHHHHHHHHHhCC--CC-ccCHHHHHHHHH
Q psy2902 262 VYDLGGGTFDVSIIEIADVDGEKQFEVL-ST--NGD-TFLGGEDFDQRIIDYILDEFNKINGI--DL-RKDSIALQRIKA 334 (945)
Q Consensus 262 VvD~GggT~dvsv~~~~~~~~~~~~~vl-~~--~~~-~~lGG~~iD~~l~~~l~~~~~~~~~~--~~-~~~~~~~~~L~~ 334 (945)
.+-+|.+++...+..- ........... .. .+. ...|+..--...++|+.+.+...... .. ..+...+..|.+
T Consensus 282 ~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 360 (541)
T TIGR01315 282 AAVAGTSTCHMAMTKG-PVFVPGVWGPYRDALIPGYWLAEGGQSAAGELMDHMLETHVAYDETVKEAEAAGKNIYDYLNE 360 (541)
T ss_pred EEEecCceEEEEecCC-CccCCceeecccCccCCCceEEecCccchhHHHHHHHHhCccchHHHHHHHhccCcHHHHHHH
Confidence 3446665553332211 01011111101 00 110 11133444446677888764210000 00 000112333334
Q ss_pred HHHHHHHHhcCC-----cceeeeeceeecc---------CCCCeEEEEEEcHHH---HHHHHHHHHHHHHHHHHHHHHHc
Q psy2902 335 SAERAKIELSSS-----KQTEINEPYIAMS---------NGAPVHLNLKITRAK---LELLVDELITRTIEPCRIAIKDA 397 (945)
Q Consensus 335 ~~e~~K~~Ls~~-----~~~~i~i~~~~~~---------~~~~~~~~~~itr~~---~e~~~~~~i~~i~~~i~~~l~~~ 397 (945)
..++.-...... ....+.+|++... .+...+++...+|++ |.+.+-+.+......+.+.+++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~gl~flP~l~G~r~P~~dp~arG~~~Gl~~~~~~~~~~~~~rAvlEgiaf~~r~~~e~l~~~ 440 (541)
T TIGR01315 361 HLKEMAAKTNAPSISYLVRHFHVYPDLWGNRSPIADPNMRGVIIGLSMDRSKDGLALLYYATMEFIAYGTRQIVEAMNTA 440 (541)
T ss_pred HHHHhhhhcccCccccCCCceEEccccccCcCCCCCCCCceEEECCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333222111111 1345778877522 122345666778844 44444454544455555666655
Q ss_pred CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCC
Q psy2902 398 GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGD 455 (945)
Q Consensus 398 ~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~ 455 (945)
+. .++.|.++||+++++.|.|++++.+|.++.+..+ .++.|+|||++|+...|.
T Consensus 441 g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA~~~~G~ 494 (541)
T TIGR01315 441 GH---TIKSIFMSGGQCQNPLLMQLIADACDMPVLIPYV-NEAVLHGAAMLGAKAAGT 494 (541)
T ss_pred CC---CccEEEEecCcccCHHHHHHHHHHHCCeeEecCh-hHHHHHHHHHHHHHhcCc
Confidence 43 4789999999999999999999999999986654 458899999999877664
|
This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins. |
| >PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.4e-09 Score=120.96 Aligned_cols=209 Identities=20% Similarity=0.205 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEc----CC------------CCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccC
Q psy2902 188 VLRKMKKTAEDYLGGEITEAVITV----PA------------YFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 251 (945)
Q Consensus 188 ~L~~l~~~a~~~~~~~~~~~VitV----Pa------------~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~ 251 (945)
+-..+...+++++..++.++++-. +. -......+...++++.|||+...+--++.|.+-.+...
T Consensus 90 l~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~Aa~k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~ 169 (340)
T PF11104_consen 90 LEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVAAPKEIVESYVELFEEAGLKPVAVDVEAFALARLFEFL 169 (340)
T ss_dssp HHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEEEEHHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHH
T ss_pred HHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEEEcHHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHH
Confidence 344567777777776655543311 00 01245567778999999999887777777765444331
Q ss_pred ----CCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHH
Q psy2902 252 ----KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSI 327 (945)
Q Consensus 252 ----~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~ 327 (945)
........++++|+|+.++.++++.- +.+.. .....+||.++++.+.+.+.-.
T Consensus 170 ~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~------g~~~f---~R~i~~G~~~l~~~i~~~~~i~-------------- 226 (340)
T PF11104_consen 170 EPQLPDEEDAETVALVDIGASSTTVIIFQN------GKPIF---SRSIPIGGNDLTEAIARELGID-------------- 226 (340)
T ss_dssp HHTST----T-EEEEEEE-SS-EEEEEEET------TEEEE---EEEES-SHHHHHHHHHHHTT----------------
T ss_pred HHhCCcccccceEEEEEecCCeEEEEEEEC------CEEEE---EEEEeeCHHHHHHHHHHhcCCC--------------
Confidence 11124567999999999999999863 22222 1124569999999998653222
Q ss_pred HHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCC
Q psy2902 328 ALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIK--DAGIKVSDIN 405 (945)
Q Consensus 328 ~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~--~~~~~~~~i~ 405 (945)
..+||+.|..-+... +...+.+.+.++.+...|.+.++ ........|+
T Consensus 227 -----~~~Ae~~k~~~~l~~-------------------------~~~~~~l~~~~~~l~~EI~rsl~~y~~~~~~~~i~ 276 (340)
T PF11104_consen 227 -----FEEAEELKRSGGLPE-------------------------EYDQDALRPFLEELAREIRRSLDFYQSQSGGESIE 276 (340)
T ss_dssp -----HHHHHHHHHHT-------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH------S
T ss_pred -----HHHHHHHHhcCCCCc-------------------------chHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 345666665421100 22345566666777777776666 2223345799
Q ss_pred cEEEecCccccHHHHHHHHHHhCCCCCC---------CC----------CCCchhhhhHHHhh
Q psy2902 406 DIILVGGMTRMPKVQEKVKEFFGKDPRR---------DI----------NPDEAVAVGAAIQG 449 (945)
Q Consensus 406 ~ViLvGG~s~~p~v~~~l~~~fg~~~~~---------~~----------~p~~avA~GAa~~a 449 (945)
.|+|+||+|+++.+.+.|++.++.++.. .. .|..++|.|+|+.+
T Consensus 277 ~I~L~Ggga~l~gL~~~l~~~l~~~v~~~~p~~~~~~~~~~~~~~~~~~~~~~avA~GLAlR~ 339 (340)
T PF11104_consen 277 RIYLSGGGARLPGLAEYLSEELGIPVEVINPFKNIKLDPKINSEYLQEDAPQFAVALGLALRG 339 (340)
T ss_dssp EEEEESGGGGSTTHHHHHHHHHTSEEEE--GGGGSB--TTS-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCccchhhHHHHHHHHHCCceEEcChHHhCccCcccChhhhhhhhhHHHHHHHHhhcC
Confidence 9999999999999999999999876531 11 25568999999864
|
|
| >PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.5e-10 Score=94.27 Aligned_cols=61 Identities=54% Similarity=1.185 Sum_probs=49.2
Q ss_pred CCCCCccccccCcCcccCCCCCCCceEeEee----ceeeeeecCCCCCCceEEe-ecCCcccCCCc
Q psy2902 719 CKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVI-PHPCLDCNGIG 779 (945)
Q Consensus 719 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~----~~~~~~~~C~~C~G~g~~~-~~~c~~c~G~g 779 (945)
|+.|+|+|........+|+.|+|+|++.+.. ++++++.+|+.|+|.|+++ .++|..|+|.|
T Consensus 1 C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~i~~~~C~~C~G~g 66 (66)
T PF00684_consen 1 CPKCNGTGAKPGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKIIEKDPCKTCKGSG 66 (66)
T ss_dssp -CCCTTTSB-STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE-TSSB-SSSTTSS
T ss_pred CCcCCCcccCCCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeEECCCCCCCCCCcC
Confidence 8999999999888999999999999986654 6678999999999999998 99999999975
|
DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A. |
| >TIGR01234 L-ribulokinase L-ribulokinase | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.6e-10 Score=132.08 Aligned_cols=222 Identities=17% Similarity=0.159 Sum_probs=128.6
Q ss_pred HHHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEE---EecC
Q psy2902 221 QATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVL---STNG 293 (945)
Q Consensus 221 ~~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl---~~~~ 293 (945)
....++|+..|| +++.-..+..||+++.+... .+. ++.-+|.+++...+..- ........... ...+
T Consensus 247 ~v~~~~A~~~GL~~g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 320 (536)
T TIGR01234 247 TLTPEWAQRTGLPEGVVVAVGNFDAHVGAVAAGIAQ---PGA--LVKIMGTSTCHVLIGDK-QRAVPGMCGVVDGGIVPG 320 (536)
T ss_pred ccCHHHHHHhCCCCCCeEEecchhHhhhhhcccccc---CCc--EEEEEccceEEEEecCc-cccCCceeeeccCcccCC
Confidence 344577777776 45666788888888877543 233 33446666553332210 00001100000 0000
Q ss_pred -CCCCchHHHHHHHHHHHHHHHHHHhC-CCC-ccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------C
Q psy2902 294 -DTFLGGEDFDQRIIDYILDEFNKING-IDL-RKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------G 361 (945)
Q Consensus 294 -~~~lGG~~iD~~l~~~l~~~~~~~~~-~~~-~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~ 361 (945)
....|+........+|+.+.+..... ... ......+..|.+.+++. .......+.+|++.... +
T Consensus 321 ~~~~~~~~~~~G~~~~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~----p~g~~gllflP~l~Ger~P~~d~~arG 396 (536)
T TIGR01234 321 FIGYEAGQSAVGDIFAWFGKVCVPPELKTEANASQKQLHEALSEAAAKQ----PSGEHGLVALDWFNGNRSPLVDQRLKG 396 (536)
T ss_pred eeEEeccccchHHHHHHHHHHhcchHHHHHHHhcCCCHHHHHHHHHHhC----CCCCCCeEecchhccCCCCCCCCcceE
Confidence 00113444455566787777621100 000 00001233444444332 22333446677664211 1
Q ss_pred CCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCc-cccHHHHHHHHHHhCCCCCCCCCCCch
Q psy2902 362 APVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGM-TRMPKVQEKVKEFFGKDPRRDINPDEA 440 (945)
Q Consensus 362 ~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~fg~~~~~~~~p~~a 440 (945)
...+++...+|.+|.+.+-+.+......+.+.|++.+. .++.|+++||+ |+++.|.+++++.||.++.+..+ .++
T Consensus 397 ~~~Gl~~~~~~~~~~RAvlEgia~~~~~~l~~l~~~g~---~~~~i~~~GGg~a~s~~w~Qi~Adv~g~pV~~~~~-~e~ 472 (536)
T TIGR01234 397 VITGLTLATDAPLLYRALIEATAFGTRMIMETFTDSGV---PVEELMAAGGIARKNPVIMQIYADVTNRPLQIVAS-DQA 472 (536)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeCCccccCHHHHHHHHHhhCCeeEeccC-Ccc
Confidence 22345567789999988888877777777777776554 47899999999 99999999999999999976655 468
Q ss_pred hhhhHHHhhhhccCCC
Q psy2902 441 VAVGAAIQGSVLSGDR 456 (945)
Q Consensus 441 vA~GAa~~a~~~~~~~ 456 (945)
.|+|||+.|+...|..
T Consensus 473 ~a~GaA~lA~~~~G~~ 488 (536)
T TIGR01234 473 PALGAAIFAAVAAGVY 488 (536)
T ss_pred hhHHHHHHHHHHcCCc
Confidence 8999999999776643
|
This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli. |
| >PRK04123 ribulokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-10 Score=132.36 Aligned_cols=220 Identities=15% Similarity=0.164 Sum_probs=125.8
Q ss_pred HHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEE--e--cC
Q psy2902 222 ATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLS--T--NG 293 (945)
Q Consensus 222 ~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~--~--~~ 293 (945)
...+||+..|| +++....+..|++++.+. . .+. +++-+|.+++-..+..- ............ . ..
T Consensus 252 v~~~~a~~~GL~~g~pV~~g~~D~~aa~~G~g~-~---~g~--~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 324 (548)
T PRK04123 252 LTAEWAQRLGLPEGVAVSVGAFDAHMGAVGAGA-E---PGT--LVKVMGTSTCDILLADK-QRAVPGICGQVDGSIVPGL 324 (548)
T ss_pred cCHHHHHHhCCCCCCeEEecchhhhhhhcccCc-C---CCc--EEEEecCceEEEEecCC-ccccCceeecccCcccCCe
Confidence 34577777777 355677888999988876 3 122 23345665542222211 000001000000 0 00
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhC-CCC-ccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CC
Q psy2902 294 DTFLGGEDFDQRIIDYILDEFNKING-IDL-RKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GA 362 (945)
Q Consensus 294 ~~~lGG~~iD~~l~~~l~~~~~~~~~-~~~-~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~ 362 (945)
-...|+..--...++|+.+.+..... ... ......+..|.+.++++ .......+.+|++.... +.
T Consensus 325 ~~~~~~~~~~G~~l~W~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~----~~g~~gl~f~P~l~Ger~P~~~~~arg~ 400 (548)
T PRK04123 325 IGYEAGQSAVGDIFAWFARLLVPPEYKDEAEARGKQLLELLTEAAAKQ----PPGEHGLVALDWFNGRRTPLADQRLKGV 400 (548)
T ss_pred eeecccccchHHHHHHHHHhcchHhHHHHHHhcCCcHHHHHHHHHHhc----CCCCCceEEcccccCCCCCCCCCCCceE
Confidence 00123333344566788776631000 000 00011233344444333 33334456777764221 12
Q ss_pred CeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCc-cccHHHHHHHHHHhCCCCCCCCCCCchh
Q psy2902 363 PVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGM-TRMPKVQEKVKEFFGKDPRRDINPDEAV 441 (945)
Q Consensus 363 ~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~-s~~p~v~~~l~~~fg~~~~~~~~p~~av 441 (945)
..+++...+|.++.+.+-+.+......+.+.|++.+. .++.|+++||+ |+++.|.|++++.||.++.+.. +.++.
T Consensus 401 ~~Gl~~~~~~~~l~RAvlEgia~~~~~~~e~l~~~g~---~~~~i~~~GGg~s~s~~w~Qi~ADv~g~pV~~~~-~~e~~ 476 (548)
T PRK04123 401 ITGLTLGTDAPDIYRALIEATAFGTRAIMECFEDQGV---PVEEVIAAGGIARKNPVLMQIYADVLNRPIQVVA-SDQCP 476 (548)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEeCCCcccCHHHHHHHHHhcCCceEecC-ccccc
Confidence 2344567789998888777777666777777776554 36899999999 9999999999999999996544 56788
Q ss_pred hhhHHHhhhhccCCC
Q psy2902 442 AVGAAIQGSVLSGDR 456 (945)
Q Consensus 442 A~GAa~~a~~~~~~~ 456 (945)
|+|||+.|+...|..
T Consensus 477 alGaA~lA~~~~G~~ 491 (548)
T PRK04123 477 ALGAAIFAAVAAGAY 491 (548)
T ss_pred hHHHHHHHHHHhccC
Confidence 999999998766643
|
|
| >PRK10939 autoinducer-2 (AI-2) kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.9e-10 Score=131.50 Aligned_cols=82 Identities=20% Similarity=0.175 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 371 TRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
+|.++-+.+-+.+......+.+.+++. +. .++.|+++||+++++.|.|++++.+|.++....+ .++.++|||+.|
T Consensus 379 ~~~~~~RAvlEgia~~~~~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~~-~e~~alGaA~lA 454 (520)
T PRK10939 379 NKATLFRALEENAAIVSACNLQQIAAFSGV---FPSSLVFAGGGSKGKLWSQILADVTGLPVKVPVV-KEATALGCAIAA 454 (520)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEeCCcccCHHHHHHHHHhcCCeeEEecc-cCchHHHHHHHH
Confidence 788888888777776666677777653 44 3689999999999999999999999999976554 467899999999
Q ss_pred hhccCCC
Q psy2902 450 SVLSGDR 456 (945)
Q Consensus 450 ~~~~~~~ 456 (945)
+...|..
T Consensus 455 ~~~~G~~ 461 (520)
T PRK10939 455 GVGAGIY 461 (520)
T ss_pred HHHhCCC
Confidence 8777643
|
|
| >PRK10266 curved DNA-binding protein CbpA; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.1e-10 Score=122.34 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=58.7
Q ss_pred EeecCCcccCCCceEee-------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEec
Q psy2902 767 VIPHPCLDCNGIGRIKR-------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKP 827 (945)
Q Consensus 767 ~~~~~c~~c~G~g~~~~-------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~ 827 (945)
+.+|+.|+|.|.++..+ ...++|+||+|+++|++++++|+|+|..+ .+|||||+|+|.+
T Consensus 198 v~ph~~f~r~g~DL~~~~~Isl~~al~G~~~~i~~~~g~v~v~ip~g~~~g~~~ri~g~G~p~~~--~~GdL~v~~~v~~ 275 (306)
T PRK10266 198 IAPHPLFDIVGQDLEIVVPLAPWEAALGAKVTVPTLKESILLTIPPGSQAGQRLRVKGKGLVSKK--QTGDLYAVLKIVM 275 (306)
T ss_pred EcCCCCeEEeCCceEEEEecCHHHHhCCCEEEeeCCCccEEEEeCCCcCCCCEEEECCCCCCCCC--CCCCEEEEEEEEC
Confidence 46899999999544433 23368999999999999999999998653 5899999999999
Q ss_pred CCcccccCCCceeE
Q psy2902 828 HKVFERDGDDLHYE 841 (945)
Q Consensus 828 ~~~~~r~g~dl~~~ 841 (945)
|+.++.++..++..
T Consensus 276 P~~l~~~q~~l~~~ 289 (306)
T PRK10266 276 PPKPDEKTAALWQQ 289 (306)
T ss_pred CCCCCHHHHHHHHH
Confidence 99988777655443
|
|
| >TIGR01311 glycerol_kin glycerol kinase | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.9e-09 Score=120.80 Aligned_cols=203 Identities=17% Similarity=0.171 Sum_probs=119.3
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe---ecCCceEEEEEe-cCC----C-CCchH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD---VDGEKQFEVLST-NGD----T-FLGGE 300 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~---~~~~~~~~vl~~-~~~----~-~lGG~ 300 (945)
.|++++.-..+..|++++.+.... +..++ -+|. ..+.++.... ............ ..+ . ..|+.
T Consensus 231 ~g~pV~~g~~D~~aa~~G~g~~~~---g~~~~--~~GT--s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 303 (493)
T TIGR01311 231 AEIPITGVLGDQQAALFGQACFKP---GQAKN--TYGT--GCFLLMNTGEKPVISKHGLLTTVAYQLGGKKPVYALEGSV 303 (493)
T ss_pred CCceEEEecccHHHHHhhCcCCCC---CceEE--eecc--cceEeeecCCccccCCCCceEEEEEecCCCCceEEEEeeh
Confidence 466777778899999998876442 22222 2343 3332222211 011111111111 111 1 12333
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEc
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKIT 371 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~it 371 (945)
..-...++|+++.|.. . .. ...+.+.+... . .....+.+|++... .+...+++...+
T Consensus 304 ~~~g~~~~W~~~~~~~----~--~~---~~~~~~~a~~~----~-g~~g~~~~P~l~G~r~P~~~~~arg~~~Gl~~~~~ 369 (493)
T TIGR01311 304 FVAGAAVQWLRDNLKL----I--KH---AAESEALARSV----E-DNGGVYFVPAFTGLGAPYWDPDARGAIFGLTRGTT 369 (493)
T ss_pred hhhHHHHHHHHHHhCC----C--CC---HHHHHHHHhcC----C-CCCCEEEeCcccCCCCCcCCCCCcEEEECcCCCCC
Confidence 3445567898887741 0 11 11222222211 1 22344667765421 112345566778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
+.++.+.+-+.+......+.+.|++. +. .++.|.++||+++++.|.+++++.||.++.... ..++.|+|||+.|+
T Consensus 370 ~~~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADv~g~pv~~~~-~~e~~alGaA~~a~ 445 (493)
T TIGR01311 370 KAHIARAALEAIAFQTRDVLEAMEKDAGV---EITKLRVDGGMTNNNLLMQFQADILGVPVVRPK-VTETTALGAAYAAG 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CCceEEEecccccCHHHHHHHHHhcCCeeEecC-CCcchHHHHHHHHH
Confidence 99998888777777666666777653 43 368999999999999999999999999997544 45788999999998
Q ss_pred hccCCCC
Q psy2902 451 VLSGDRK 457 (945)
Q Consensus 451 ~~~~~~~ 457 (945)
...|...
T Consensus 446 ~~~G~~~ 452 (493)
T TIGR01311 446 LAVGYWK 452 (493)
T ss_pred hhcCcCC
Confidence 7776433
|
This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases. |
| >TIGR01312 XylB D-xylulose kinase | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.5e-09 Score=122.12 Aligned_cols=210 Identities=21% Similarity=0.259 Sum_probs=121.5
Q ss_pred HHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe-cCCCC-
Q psy2902 223 TKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST-NGDTF- 296 (945)
Q Consensus 223 l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~-~~~~~- 296 (945)
..++++..|| +++....+..|++++.+... ...+++-+|.+++-..+..-........+..... ..+..
T Consensus 215 ~~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~-----~g~~~~~~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (481)
T TIGR01312 215 RPEVAARLGLSAGVPVAAGGGDNAAGAIGTGTVD-----PGDAMMSLGTSGVVYAVTDKPLPDPAGAVHGFCHALPGGWL 289 (481)
T ss_pred cHHHHHHhCCCCCCeEEecchHHHHHhhCCCccc-----CCcEEEEecCceEEEEecCCcccCcccceeeeeeecCCceE
Confidence 3456666665 45666788888888776433 2234445666654322211001111111222211 11111
Q ss_pred -CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeEE
Q psy2902 297 -LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVHL 366 (945)
Q Consensus 297 -lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~~ 366 (945)
.|+..--...++|+.+.|.. .+ +..|.+.++++ .......+.+|++.... +...++
T Consensus 290 ~~~~~~~~g~~~~w~~~~~~~-------~~---~~~l~~~~~~~----~~~~~~~~~~p~~~G~r~P~~~~~~~g~~~gl 355 (481)
T TIGR01312 290 PMGVTLSATSSLEWFRELFGK-------ED---VEALNELAEQS----PPGAEGVTFLPYLNGERTPHLDPQARGSFIGL 355 (481)
T ss_pred EEeEehhhHHHHHHHHHHhCC-------Cc---HHHHHHHHhcC----CCCCCCeEEecccccCCCCCCCCCcceEEECC
Confidence 13333344567888877631 11 23344444333 22223345566553211 112344
Q ss_pred EEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhH
Q psy2902 367 NLKITRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGA 445 (945)
Q Consensus 367 ~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GA 445 (945)
+...++.++-+.+-+.+......+.+.|++. +. .++.|+++||+++++.|.+++++.||.++.... ..++.|+||
T Consensus 356 ~~~~~~~~l~railEgia~~~~~~~~~l~~~~~~---~~~~i~~~GG~s~s~~~~Q~~Adv~g~pv~~~~-~~e~~a~Ga 431 (481)
T TIGR01312 356 THNTTRADLTRAVLEGVTFALRDSLDILREAGGI---PIQSIRLIGGGAKSPAWRQMLADIFGTPVDVPE-GEEGPALGA 431 (481)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcceEEEeccccCCHHHHHHHHHHhCCceeecC-CCcchHHHH
Confidence 5566788888777666666666666666653 23 378999999999999999999999999987554 667889999
Q ss_pred HHhhhhccCC
Q psy2902 446 AIQGSVLSGD 455 (945)
Q Consensus 446 a~~a~~~~~~ 455 (945)
|++|+...+.
T Consensus 432 A~~a~~~~g~ 441 (481)
T TIGR01312 432 AILAAWALGE 441 (481)
T ss_pred HHHHHHhcCC
Confidence 9999877664
|
D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization. |
| >PRK14299 chaperone protein DnaJ; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-09 Score=118.30 Aligned_cols=128 Identities=22% Similarity=0.369 Sum_probs=87.1
Q ss_pred CCCCCCCccceeecccccccccccee-----eEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeec
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFN-----TSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQT 757 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~-----~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~ 757 (945)
+++.+...++.++|+..+.+.....+ ..+.+.. |...+. .-...|.|..
T Consensus 127 ~~g~dl~~~l~isL~ea~~G~~~~i~l~g~~~~V~Ip~----------G~~~G~----~ir~~g~G~~------------ 180 (291)
T PRK14299 127 RKGRDLEAELPLTLEEAYRGGEKVVEVAGERLSVRIPP----------GVREGQ----VIRLAGKGRQ------------ 180 (291)
T ss_pred CCCCCEEEEEEecHHHHhCCCeEEEeeCCEEEEEecCC----------CcCCCc----EEEECCCCCC------------
Confidence 45678889999999999988876543 3333321 111111 0011222210
Q ss_pred CCCCCCce----EEeecCCcccCCCceEee---------------e----eeEEEEeecCCCCCeEEEEcCCCCCCCCCC
Q psy2902 758 CPKCQGAG----KVIPHPCLDCNGIGRIKR---------------N----KTLEVKIPAGIENNMRIRSTGNGEPGLNGG 814 (945)
Q Consensus 758 C~~C~G~g----~~~~~~c~~c~G~g~~~~---------------~----~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~ 814 (945)
.|.= .+.+|+.|+|.|..+..+ . ..++|+||+|+++|++++++|+|+|.. ++
T Consensus 181 ----~GDL~v~i~v~~h~~f~R~G~DL~~~~~Isl~eAl~G~~~~v~tldG~~~v~ip~~~~~g~~~rl~g~G~p~~-~~ 255 (291)
T PRK14299 181 ----GGDLYLVVRLLPHPVFRLEGDDLYATVDVPAPIAVVGGKVRVMTLDGPVEVTIPPRTQAGRKLRLKGKGWPRG-PA 255 (291)
T ss_pred ----CCCEEEEEEEcCCCCeEEECCEEEEEEecCHHHHhCCCEEEEECCCCCEEEEeCCCcCCCCEEEECCCCCCCC-CC
Confidence 0111 146799999999554443 2 235899999999999999999999963 35
Q ss_pred CCccEEEEEEEecCCcccccCCCceeE
Q psy2902 815 SNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 815 ~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
.+|||||+|+|..|+.++.++.+++..
T Consensus 256 ~~GDL~v~~~V~~P~~l~~~~~~~l~~ 282 (291)
T PRK14299 256 GRGDQYAEVRITIPTRPTPEEERLYKQ 282 (291)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 689999999999999999888776554
|
|
| >PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=112.11 Aligned_cols=173 Identities=20% Similarity=0.244 Sum_probs=95.6
Q ss_pred ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 233 EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 233 ~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
..+.+++|+.||.+.+.... .....++|+|+||+|+|++++.- ..-.+-...+...+|-..+...+.+.+..
T Consensus 141 ~~V~V~PQ~~~A~~~~~~~~--~~~~~~lVVDIGG~T~Dv~~v~~------~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 141 KDVEVFPQSVGAVFDALMDL--DEDESVLVVDIGGRTTDVAVVRG------GLPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp EEEEEEESSHHHHHHHHHTS---TTSEEEEEEE-SS-EEEEEEEG------GG--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred eeEEEEcccHHHHHHHHHhh--cccCcEEEEEcCCCeEEeeeecC------CccccchhccCCchhHHHHHHHHHHHHHH
Confidence 45778999999999887663 34567999999999999998852 11112222334567888888887776655
Q ss_pred HHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHH
Q psy2902 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRI 392 (945)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~ 392 (945)
.... .+......+..... -+..+.. .+.. .-..+++.++++..++++.+.|.+
T Consensus 213 ~~~~-------~s~~~~~~ii~~~~-~~~~~~~----~i~~---------------~~~~~~v~~~i~~~~~~l~~~i~~ 265 (318)
T PF06406_consen 213 AGID-------TSELQIDDIIRNRK-DKGYLRQ----VIND---------------EDVIDDVSEVIEEAVEELINRILR 265 (318)
T ss_dssp -SBH-------HHHHHHHHHHHTTT--HHHHHH----HSSS---------------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCC-------CcHHHHHHHHHhhh-ccceecc----cccc---------------hhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1100 00000111111000 0000000 0000 001234445555555555555555
Q ss_pred HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCC---CCCCCCCCCchhhhhHH
Q psy2902 393 AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK---DPRRDINPDEAVAVGAA 446 (945)
Q Consensus 393 ~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~---~~~~~~~p~~avA~GAa 446 (945)
.+.+ ..+++.|+|+||+| ..+.+.|++.|+. .+....||..|-|+|-+
T Consensus 266 ~~~~----~~~~~~I~~vGGGA--~ll~~~Ik~~~~~~~~~i~i~~~pqfAnv~G~~ 316 (318)
T PF06406_consen 266 ELGD----FSDIDRIFFVGGGA--ILLKDAIKEAFPVPNERIVIVDDPQFANVRGFY 316 (318)
T ss_dssp HHTT----S-S-SEEEEESTTH--HHHHHHHHHHHT--GGGEE--SSGGGHHHHHHH
T ss_pred HHhh----hccCCeEEEECCcH--HHHHHHHHHhhCCCCCcEEECCCchhhHHHHHh
Confidence 4432 34678999999998 6678999999873 45678899999999864
|
They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A. |
| >TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.9e-08 Score=104.18 Aligned_cols=171 Identities=16% Similarity=0.187 Sum_probs=100.6
Q ss_pred eecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHH
Q psy2902 236 RIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFN 315 (945)
Q Consensus 236 ~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~ 315 (945)
..++|.+|.+.+.....+ ..+ .|+|+||..+-+..++ ++.+.-.........|+-.|.+.+++.+-
T Consensus 73 ~~~~ei~~~~~g~~~~~~--~~~--~vidiGgqd~k~i~~~------~g~~~~~~~n~~ca~Gtg~f~e~~a~~l~---- 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP--EAR--GVIDIGGQDSKVIKID------DGKVDDFTMNDKCAAGTGRFLEVTARRLG---- 138 (248)
T ss_pred CceEEhhHHHHHHHHHCC--CCC--EEEEecCCeeEEEEEC------CCcEeeeeecCcccccccHHHHHHHHHcC----
Confidence 367888887766544332 223 4789999988887774 23333233344445577767777665432
Q ss_pred HHhCCCCccCHHHHHHHHHHHHHHHHHhcCC----cceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHH
Q psy2902 316 KINGIDLRKDSIALQRIKASAERAKIELSSS----KQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCR 391 (945)
Q Consensus 316 ~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~ 391 (945)
.+ .++++.++..-... ..-.++.+.-... .+.-..++ ++++..+++.+...+.
T Consensus 139 ----~~-----------~~e~~~~~~~~~~~~~~~~~c~vf~~s~vi~-----~l~~g~~~---~di~~~~~~~va~~i~ 195 (248)
T TIGR00241 139 ----VS-----------VEELGSLAEKADRKAKISSMCTVFAESELIS-----LLAAGVKK---EDILAGVYESIAERVA 195 (248)
T ss_pred ----CC-----------HHHHHHHHhcCCCCCCcCCEeEEEechhHHH-----HHHCCCCH---HHHHHHHHHHHHHHHH
Confidence 11 22333332221110 0011111100000 00001122 4556666666666666
Q ss_pred HHHHHcCCCCCCCC-cEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHh
Q psy2902 392 IAIKDAGIKVSDIN-DIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 392 ~~l~~~~~~~~~i~-~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~ 448 (945)
..+.... ++ .|+|+||.++++.|.+.+++.++.++..+.+|..+.|+|||++
T Consensus 196 ~~~~~~~-----~~~~Vvl~GGva~n~~l~~~l~~~lg~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 196 EMLQRLK-----IEAPIVFTGGVSKNKGLVKALEKKLGMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred HHHhhcC-----CCCCEEEECccccCHHHHHHHHHHhCCcEEcCCCccHHHHHHHHhC
Confidence 6665443 34 8999999999999999999999999998999999999999974
|
This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase. |
| >KOG0679|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.4e-07 Score=99.24 Aligned_cols=181 Identities=16% Similarity=0.146 Sum_probs=121.5
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEe--eC------CcEEecHHHHHhhhhCCCchhHHHHHhhCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQ--EN------GEILVGAPAKRQAVTNPKNTIYAAKRLIGR 144 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~--~~------~~~~~G~~A~~~~~~~~~~~i~~~k~llg~ 144 (945)
.|-||.|+-.++++|...+-|..+. ||++... .+ +..+++..|... ..
T Consensus 13 alViDpGS~~traGyaged~Pk~il--------PS~~G~~tk~~~d~~~~~~~y~~~~ai~~--pr-------------- 68 (426)
T KOG0679|consen 13 ALVIDPGSHTTRAGYAGEDSPKAIL--------PSVYGKVTKTDGDAEDKKGYYVDENAIHV--PR-------------- 68 (426)
T ss_pred eEEEeCCCceEeccccCCCCccccc--------cceeeeeecccCccccccceEeechhccC--CC--------------
Confidence 5889999999999999887776553 7777641 11 112444433321 00
Q ss_pred CCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHH
Q psy2902 145 KFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATK 224 (945)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~ 224 (945)
++..+.-.+.+..+...|++.+.+++..+.-.. ....-.-++||-|++-+.+.|+.+.
T Consensus 69 ---------------------~gmEv~~~i~nGlv~dWD~~~~~w~~~~~~~Lk-~~p~ehP~litEp~wN~~~~Rek~~ 126 (426)
T KOG0679|consen 69 ---------------------PGMEVKTPIKNGLVEDWDLFEMQWRYAYKNQLK-VNPEEHPVLITEPPWNTRANREKLT 126 (426)
T ss_pred ---------------------CCCeeccchhcCCcccHHHHHHHHHHHHhhhhh-cCccccceeeecCCCCcHHHHHHHH
Confidence 111122223345566778888888887753321 2222346799999877888888776
Q ss_pred HH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHH
Q psy2902 225 DA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFD 303 (945)
Q Consensus 225 ~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD 303 (945)
++ .+...++...|+.+|+|+|++.+. .+-||+|+|++++.++-+. ++.+--.+.. -..+||+.++
T Consensus 127 ElmFE~~nvPAf~L~k~~v~~AFA~Gr-------stalVvDiGa~~~svsPV~------DG~Vlqk~vv-ks~laGdFl~ 192 (426)
T KOG0679|consen 127 ELMFEKLNVPAFYLAKTAVCTAFANGR-------STALVVDIGATHTSVSPVH------DGYVLQKGVV-KSPLAGDFLN 192 (426)
T ss_pred HHHHhhcCCceEEEechHHHHHHhcCC-------CceEEEEecCCCceeeeee------cceEeeeeeE-ecccchHHHH
Confidence 65 467788889999999999998754 3479999999999999774 2333222322 2568999999
Q ss_pred HHHHHHHHHH
Q psy2902 304 QRIIDYILDE 313 (945)
Q Consensus 304 ~~l~~~l~~~ 313 (945)
..+.+.|..+
T Consensus 193 ~~~~q~l~~~ 202 (426)
T KOG0679|consen 193 DQCRQLLEPK 202 (426)
T ss_pred HHHHHHHhhc
Confidence 9999988765
|
|
| >COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-07 Score=94.75 Aligned_cols=189 Identities=18% Similarity=0.238 Sum_probs=117.4
Q ss_pred HHHHHHHHHhCCCCCc-----EEEEcCCCCC-----------HHHHHHHHHHHHHcCCccceecchhHHHHHHhccC---
Q psy2902 191 KMKKTAEDYLGGEITE-----AVITVPAYFN-----------DAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD--- 251 (945)
Q Consensus 191 ~l~~~a~~~~~~~~~~-----~VitVPa~~~-----------~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~--- 251 (945)
.+...|..++..++.+ .+++-++.-. .+..+...+|+++|||+...+--|.-|.--+|...
T Consensus 106 ~V~~ea~~y~PyP~EEv~lDy~vlg~~~~~~e~v~Vll~AtrkE~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~ 185 (354)
T COG4972 106 QVESEASRYIPYPLEEVNLDYQVLGPSANEPEKVQVLLVATRKEVVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQ 185 (354)
T ss_pred HHHHHHhhcCCCchhhcccceEEeccccCCCccEEEEEEEeehhhhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHH
Confidence 3446666666544332 3454444332 23345668899999999877777777776555411
Q ss_pred -CCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHH
Q psy2902 252 -KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQ 330 (945)
Q Consensus 252 -~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~ 330 (945)
......-.++|+|+|+..+.+.++.- +...+. ....+|+++++..+.+. ++++
T Consensus 186 ~~~~~a~~~vav~~Igat~s~l~vi~~----gk~ly~-----r~~~~g~~Qlt~~i~r~--------~~L~--------- 239 (354)
T COG4972 186 FGPEEAAMKVAVFDIGATSSELLVIQD----GKILYT-----REVPVGTDQLTQEIQRA--------YSLT--------- 239 (354)
T ss_pred hCCchhhhhheeeeecccceEEEEEEC----CeeeeE-----eeccCcHHHHHHHHHHH--------hCCC---------
Confidence 11122233789999999999999874 222222 24567999999888743 2333
Q ss_pred HHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCcEE
Q psy2902 331 RIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKD--AGIKVSDINDII 408 (945)
Q Consensus 331 ~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~--~~~~~~~i~~Vi 408 (945)
...++.+|....... +--.+...++++.+.+.|.+.|+- +.-...+|+.|+
T Consensus 240 --~~~a~~~k~~~~~P~-------------------------~y~~~vl~~f~~~l~~ei~Rslqfy~~~s~~~~id~i~ 292 (354)
T COG4972 240 --EEKAEEIKRGGTLPT-------------------------DYGSEVLRPFLGELTQEIRRSLQFYLSQSEMVDIDQIL 292 (354)
T ss_pred --hhHhHHHHhCCCCCC-------------------------chhHHHHHHHHHHHHHHHHHHHHHHHhccccceeeEEE
Confidence 345666665433221 111234455555555555555542 222445799999
Q ss_pred EecCccccHHHHHHHHHHhCCCCC
Q psy2902 409 LVGGMTRMPKVQEKVKEFFGKDPR 432 (945)
Q Consensus 409 LvGG~s~~p~v~~~l~~~fg~~~~ 432 (945)
|.||++.+-.+.+++.+.++.++.
T Consensus 293 LaGggA~l~gL~~~i~qrl~~~t~ 316 (354)
T COG4972 293 LAGGGASLEGLAAAIQQRLSIPTE 316 (354)
T ss_pred EecCCcchhhHHHHHHHHhCCCeE
Confidence 999999999999999999986654
|
|
| >PLN02669 xylulokinase | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-08 Score=115.36 Aligned_cols=210 Identities=11% Similarity=0.068 Sum_probs=116.4
Q ss_pred CHHHHHHHHHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe
Q psy2902 216 NDAQRQATKDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST 291 (945)
Q Consensus 216 ~~~qr~~l~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~ 291 (945)
..........+++..|| +++....+..|++++.+.... + .+++-+|.+++.+.+.........+.+ ...
T Consensus 253 ~~~~G~v~~~~a~~~Gl~~g~pV~~g~gD~~a~~~G~g~~~~---g--~~~~slGTs~~~~~~~~~~~~~~~~~~--~~~ 325 (556)
T PLN02669 253 HAVAGKIHPYFVQRFGFSSNCLVVQWSGDNPNSLAGLTLSTP---G--DLAISLGTSDTVFGITREPQPSLEGHV--FPN 325 (556)
T ss_pred CcceeeeCHHHHHHhCCCCCCEEEEecchHHHHHhccCCCCC---C--eEEEEEcccceEEEecCCCCCCCCcce--eeC
Confidence 34445556788888887 466778888899988876541 2 344557777664444321111111221 211
Q ss_pred c--CCCCC--chHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeee--------eceeec-
Q psy2902 292 N--GDTFL--GGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEIN--------EPYIAM- 358 (945)
Q Consensus 292 ~--~~~~l--GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~--------i~~~~~- 358 (945)
. .+.++ ++..--...++|+++.+.. ..+..+.+.++.. .......+. +|.+..
T Consensus 326 ~~~~~~y~~~~~~~ngg~~~~w~r~~~~~----------~~~~~~~~~~~~~----~~g~~g~l~~~~~~~e~~P~~~~~ 391 (556)
T PLN02669 326 PVDPESYMVMLCYKNGSLTREDIRNRCAD----------GSWDVFNKLLEQT----PPLNGGKLGFYYKEHEILPPLPVG 391 (556)
T ss_pred ccCCCCeEEEEEecchHHHHHHHHHHhcc----------CcHHHHHHHHHhC----CCCCCCEEEeeccCcccCCCCCCc
Confidence 1 11111 2222233456777777631 1122233333222 111122231 332210
Q ss_pred ----cCCCCeEEEEE---------EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHH
Q psy2902 359 ----SNGAPVHLNLK---------ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKE 425 (945)
Q Consensus 359 ----~~~~~~~~~~~---------itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~ 425 (945)
..+.....++. .+|.++-+.+-+.+......+.+.+. .. ..++.|+++||+|+++.|.+++.+
T Consensus 392 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~RAvlEg~a~~~r~~~~~l~---~~-~~~~~i~~~GGgs~s~~w~Qi~AD 467 (556)
T PLN02669 392 FHRYILENFSGEALDGLVEEEVGEFDPPSEVRAIIEGQFLSMRAHAERFG---MP-VPPKRIIATGGASANQSILKLIAS 467 (556)
T ss_pred cchhhhccccCcccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHh---CC-CCCcEEEEEcChhcCHHHHHHHHH
Confidence 00111122222 57888776666555544444445553 22 347899999999999999999999
Q ss_pred HhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 426 FFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 426 ~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.||.++.+...+ ++.|+|||+.|+.
T Consensus 468 Vlg~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 468 IFGCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred HcCCCeEecCCC-CchHHHHHHHHHH
Confidence 999998765554 6889999999975
|
|
| >PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-06 Score=103.75 Aligned_cols=337 Identities=19% Similarity=0.224 Sum_probs=190.9
Q ss_pred EecHHHHHhhh----hCCCchhHHHHHhhCCCCCc--------HHHHhh----hcCCCeeEEecCCCceEEEE---C---
Q psy2902 118 LVGAPAKRQAV----TNPKNTIYAAKRLIGRKFNE--------KEVQKD----ISLMPYKIVKADNGDAWISV---R--- 175 (945)
Q Consensus 118 ~~G~~A~~~~~----~~~~~~i~~~k~llg~~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~~~~---~--- 175 (945)
-+|.+|..... .....-+.+.||+||...-. ...... ....|+.-..++.|.+.+.+ .
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 47888876442 34556688999999964211 110000 01112222223445554444 1
Q ss_pred ---CeeeChhhHHHHHHHHHHHHHHHHhCCC--------------CCcEEEEcCCCCCHHHHHHHHHHHHHc--------
Q psy2902 176 ---GKKLAPPQISAEVLRKMKKTAEDYLGGE--------------ITEAVITVPAYFNDAQRQATKDAGRIA-------- 230 (945)
Q Consensus 176 ---~~~~~~~ev~a~~L~~l~~~a~~~~~~~--------------~~~~VitVPa~~~~~qr~~l~~Aa~~A-------- 230 (945)
.-.|+-..++..+|..+..+|..+.+.. ...+++|+|......+|+.+++.++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1246667888888888888886665432 447899999999999999888887766
Q ss_pred CCc--------------------cce-ecchhHHHHHHhccC------------------CC---------CCCCceEEE
Q psy2902 231 GLE--------------------VKR-IINEPTAAALAFGLD------------------KS---------GKSDRNIVV 262 (945)
Q Consensus 231 Gl~--------------------~v~-li~Ep~AAAl~~~~~------------------~~---------~~~~~~vlV 262 (945)
|.. .++ =-+|.+|.-+-|... +. ..+.-+|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 111 136666654444221 11 122345788
Q ss_pred EEeCCcceEEEEEEEEeecCCc-eEEEEEe---cCCCCCchHHHHHHHH-HHHHHHHHH----------------HhCCC
Q psy2902 263 YDLGGGTFDVSIIEIADVDGEK-QFEVLST---NGDTFLGGEDFDQRII-DYILDEFNK----------------INGID 321 (945)
Q Consensus 263 vD~GggT~dvsv~~~~~~~~~~-~~~vl~~---~~~~~lGG~~iD~~l~-~~l~~~~~~----------------~~~~~ 321 (945)
+|+||||||+.|-.+.-....+ ...+.-. .-+-.+.|++|=..++ .++...+.. .+|.+
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReGFkvAGDDiLldVI~~~VlPal~~aL~~aG~~~~~~ll~~LfG~d 650 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREGFKVAGDDILLDVIQRIVLPALQQALKKAGVADPRALLSRLFGGD 650 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhhcccccHHHHHHHHHHHhHHHHHHHHHHhcccCHHHHHHHHhCCc
Confidence 9999999999998875221222 2222111 1234568888766654 344333322 12222
Q ss_pred CccCHH--------------HHHHHHHHHHHHHHHhcCCcceeeee--------------ceee---------ccCCCCe
Q psy2902 322 LRKDSI--------------ALQRIKASAERAKIELSSSKQTEINE--------------PYIA---------MSNGAPV 364 (945)
Q Consensus 322 ~~~~~~--------------~~~~L~~~~e~~K~~Ls~~~~~~i~i--------------~~~~---------~~~~~~~ 364 (945)
-..... ....++.++|+.-..-. .......+ .++. .......
T Consensus 651 g~~~~~~~lRqQ~~lQv~~Pi~l~iL~~yE~~d~~~~-~~~~~~~f~ell~~~~Pt~~vl~yi~~~~~~~~~~~~~Fdil 729 (1002)
T PF07520_consen 651 GQSDQDRVLRQQFTLQVFIPIGLAILKAYENYDPLDP-SAEIDATFGELLEREPPTAAVLDYINEEVRRLPAGAPDFDIL 729 (1002)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-CccccccHHHhcCCcCCcHHHHHHHHHHHhhcCCCCCCccee
Confidence 100000 01234444444321000 00000000 0000 0011123
Q ss_pred EEEEEEcHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC--------
Q psy2902 365 HLNLKITRAKLELLVD---ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR-------- 433 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~---~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~-------- 433 (945)
++.+.|+.+++...+. ..+...+..+-+++...++ |.++|+|--|++|.|+.+++.....++.+
T Consensus 730 dv~l~i~~~~l~~~~~~~r~~i~~~L~~LcEvv~~Y~C-----DVLLLTGRPSrlPgvqalfr~~~pvPp~RIv~l~~Y~ 804 (1002)
T PF07520_consen 730 DVPLEIDLEKLHAAFLSDRMVICKTLRALCEVVHHYDC-----DVLLLTGRPSRLPGVQALFRHLLPVPPDRIVPLHGYR 804 (1002)
T ss_pred cceEEEcHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC-----CEEEEcCCccccHHHHHHHHHhCCCCcccEEecCCee
Confidence 6678999999998875 6777777777777776554 78999999999999999999998655432
Q ss_pred ------------CCCCCchhhhhHHHhhhhccCCCCceE
Q psy2902 434 ------------DINPDEAVAVGAAIQGSVLSGDRKDLL 460 (945)
Q Consensus 434 ------------~~~p~~avA~GAa~~a~~~~~~~~~~~ 460 (945)
..||.+.||.||.+.+.......+++.
T Consensus 805 tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF~ 843 (1002)
T PF07520_consen 805 TGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNFY 843 (1002)
T ss_pred ecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCce
Confidence 348999999999776643332444443
|
It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity []. |
| >PF01556 CTDII: DnaJ C terminal domain; InterPro: IPR002939 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.2e-09 Score=88.66 Aligned_cols=51 Identities=29% Similarity=0.613 Sum_probs=41.0
Q ss_pred eeEEEEeecCCCCCeEEEEcCCCCCCCCCC-CCccEEEEEEEecCCcccccC
Q psy2902 785 KTLEVKIPAGIENNMRIRSTGNGEPGLNGG-SNGNLYIEIHIKPHKVFERDG 835 (945)
Q Consensus 785 ~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~-~~Gdl~i~i~v~~~~~~~r~g 835 (945)
++++|+||+|+++|++++++|+|+|...++ .+||||++|+|..|..++.++
T Consensus 27 ~~~~i~ip~~~~~g~~~~i~g~G~p~~~~~~~~GdL~v~~~V~~P~~ls~~q 78 (81)
T PF01556_consen 27 KTIKIKIPPGTQPGQQLRIKGKGMPKPKGGGKRGDLIVKFEVEFPKKLSPEQ 78 (81)
T ss_dssp -EEEEEETST-STT-EEEETTESEEESSSTTSBEEEEEEEEEE--SSTSHHH
T ss_pred CEEEEeccCccCCCcEEeecCCCCCcCCCCCCcCCEEEEEEEECCCCCCHHH
Confidence 478999999999999999999999877655 799999999999999887654
|
The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolizing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. Thus, DnaK and DnaJ may bind to one and the same polypeptide chain to form a ternary complex. The formation of a ternary complex may result in cis-interaction of the J-domain of DnaJ with the ATPase domain of DnaK. An unfolded polypeptide may enter the chaperone cycle by associating first either with ATP-liganded DnaK or with DnaJ. DnaK interacts with both the backbone and side chains of a peptide substrate; it thus shows binding polarity and admits only L-peptide segments. In contrast, DnaJ has been shown to bind both L- and D-peptides and is assumed to interact only with the side chains of the substrate. This domain consists of the C-terminal region of the DnaJ protein. The function of this domain is unknown. It is found associated with IPR001623 from INTERPRO and IPR001305 from INTERPRO. ; GO: 0051082 unfolded protein binding, 0006457 protein folding; PDB: 2Q2G_A 2QLD_A 3AGX_A 3AGZ_A 3AGY_A 3I38_J 3LZ8_B 2B26_B 1C3G_A 1XAO_B .... |
| >COG5277 Actin and related proteins [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-06 Score=96.93 Aligned_cols=191 Identities=15% Similarity=0.112 Sum_probs=119.4
Q ss_pred EEEEcCccceEEEEEeCCceEEEe-CCCCCcC-ccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 74 IGIDLGTTNSCVSIIEGSQPKVIE-NSEGART-TPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 74 iGID~GTt~s~va~~~~~~~~ii~-~~~g~~~-~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
|-||.||..+++++..+..|..+. +..+.+. ..++..-...+...+|+++...... +
T Consensus 9 iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~-~-------------------- 67 (444)
T COG5277 9 IVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDN-S-------------------- 67 (444)
T ss_pred EEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCC-c--------------------
Confidence 889999999999999888776654 2222221 2222211112234445444321100 0
Q ss_pred HhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhC--CCCCcEEEEcCCCCCHHHHHHHHH-HHH
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLG--GEITEAVITVPAYFNDAQRQATKD-AGR 228 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~--~~~~~~VitVPa~~~~~qr~~l~~-Aa~ 228 (945)
............+...+....+++++...- .++. ..-..+++|-|..+....|+.+.+ +.+
T Consensus 68 ---------------~~~~~~p~~~g~i~~W~~~e~~w~~~~~~~-~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE 131 (444)
T COG5277 68 ---------------LLELRYPIENGIILNWDAMEQIWDYTFFNK-GDLLPSPEEHPLLLTEPPLNPPSNREKITELLFE 131 (444)
T ss_pred ---------------cceeecccccCccCCcHHHHHHHHHhhcch-hhccCCCcCCceEEeccCCCcHHHHHHHHHHHHH
Confidence 001112223344555666666777766653 1222 223468999999999999987754 467
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
...++.+.+..++.+++++.+... .+.+|+|+|.+.++++-+--... +.....-..+||.+++..|.+
T Consensus 132 ~~~vp~~~~~~~~~l~~ya~g~~~-----~~g~ViD~G~~~t~v~PV~DG~~-------l~~a~~ri~~gG~~it~~l~~ 199 (444)
T COG5277 132 TLNVPALYLAIQAVLSLYASGSSD-----ETGLVIDSGDSVTHVIPVVDGIV-------LPKAVKRIDIGGRDITDYLKK 199 (444)
T ss_pred hcCCcceEeeHHHHHHHHhcCCCC-----CceEEEEcCCCceeeEeeecccc-------ccccceeeecCcHHHHHHHHH
Confidence 778888899999999988876543 46899999999999997642111 111122245799999999988
Q ss_pred HHHHH
Q psy2902 309 YILDE 313 (945)
Q Consensus 309 ~l~~~ 313 (945)
.|...
T Consensus 200 lL~~~ 204 (444)
T COG5277 200 LLREK 204 (444)
T ss_pred HHhhc
Confidence 88774
|
|
| >TIGR02627 rhamnulo_kin rhamnulokinase | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-07 Score=110.47 Aligned_cols=89 Identities=15% Similarity=0.166 Sum_probs=72.5
Q ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhh
Q psy2902 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAV 443 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~ 443 (945)
.++...+|.++.+.+-+.+......+.+.|++. +. .++.|.++||++++++|.|++++.+|.++... +.++.|+
T Consensus 351 Gl~~~~~~~~l~RAv~Egva~~~r~~~e~l~~~~~~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~--~~e~~a~ 425 (454)
T TIGR02627 351 NQPIPESDAELARCIFDSLALLYRQVLLELAELRGK---PISQLHIVGGGSQNAFLNQLCADACGIRVIAG--PVEASTL 425 (454)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhCC---CcCEEEEECChhhhHHHHHHHHHHhCCceEcC--CchHHHH
Confidence 456677999999888888877777777777764 43 36899999999999999999999999999643 3678999
Q ss_pred hHHHhhhhccCCCCc
Q psy2902 444 GAAIQGSVLSGDRKD 458 (945)
Q Consensus 444 GAa~~a~~~~~~~~~ 458 (945)
|||+.|+...|..++
T Consensus 426 GaA~~a~~~~G~~~~ 440 (454)
T TIGR02627 426 GNIGVQLMALDEIND 440 (454)
T ss_pred HHHHHHHHhcCCcCC
Confidence 999999987775443
|
This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism. |
| >TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.1e-06 Score=87.03 Aligned_cols=70 Identities=20% Similarity=0.399 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCC-CCCCCCchhhhhHHHhhhh
Q psy2902 378 LVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR-RDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 378 ~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~-~~~~p~~avA~GAa~~a~~ 451 (945)
++..+...+...+...++..++. ..|+|+||.++.+.+.+.+++.++.++. .+.+|..+.|+|||++|..
T Consensus 218 I~aGl~~sia~rv~~~~~~~~i~----~~v~~~GGva~N~~l~~al~~~Lg~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 218 VIAAYCQAMAERVVSLLERIGVE----EGFFITGGIAKNPGVVKRIERILGIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHHHHHHHHHhcccCCC----CCEEEECcccccHHHHHHHHHHhCCCceeCCCCccHHHHHHHHHHHHH
Confidence 34444444444444455544433 4799999999999999999999998887 5778999999999999964
|
Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene. |
| >COG1069 AraB Ribulose kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.1e-07 Score=98.79 Aligned_cols=227 Identities=20% Similarity=0.205 Sum_probs=136.5
Q ss_pred HHHHHHHHHcCCcc----ceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeec---CCceEEEEEecC
Q psy2902 221 QATKDAGRIAGLEV----KRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVD---GEKQFEVLSTNG 293 (945)
Q Consensus 221 ~~l~~Aa~~AGl~~----v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~---~~~~~~vl~~~~ 293 (945)
..+.++|+..||+. ...+-+.-|.+++.+... ..-|++=+|.+|+++.+-.-.... .+.....+..+.
T Consensus 232 ~Lt~e~A~~lGL~~~~~Vs~g~IDAhag~~Gv~~~~-----~~~l~~I~GTStC~m~~s~~~~~v~GvwGpy~~ai~Pg~ 306 (544)
T COG1069 232 GLTPEAAQELGLPEGTVVSAGIIDAHAGAVGVGGAQ-----PGSLAMIAGTSTCHMLLSEKPRFVPGVWGPYDGAVLPGL 306 (544)
T ss_pred ccCHHHHHHhCCCCCcEEeccceeccccccccccCC-----CCeEEEEeccceEEEEecCCceecCccccccccccCcch
Confidence 56678889999853 334455556666554332 223444578888888775432110 112222233333
Q ss_pred CCCCchHHHHHHHHHHHHHHHHH---------HhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC----
Q psy2902 294 DTFLGGEDFDQRIIDYILDEFNK---------INGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---- 360 (945)
Q Consensus 294 ~~~lGG~~iD~~l~~~l~~~~~~---------~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---- 360 (945)
-..-||..-...+++||.+...- +.+.++ .......+...+++.+...+. ....+.++.+..+.
T Consensus 307 ~~~EgGQSatG~l~dhl~~~h~~~~e~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~l-~~~l~~l~~f~GNRsP~a 383 (544)
T COG1069 307 WLYEGGQSATGDLLDHLVRTHPAPLEQLAAHPKDGEEI--YESLAQRLELLTEAAAAIPPL-ASGLHVLDWFNGNRSPLA 383 (544)
T ss_pred hhhcccchhhhHHHHHHHHhCCcccchhhccchhhhHH--HHHHHHHHHHHHhhHhccCcc-cCCcEecccccCCcCCCC
Confidence 33458888889999999877421 111000 011223333334444433322 22233444333211
Q ss_pred -----CCCeEEEEEEcHHHHHHHHHHHHHHH---HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCC
Q psy2902 361 -----GAPVHLNLKITRAKLELLVDELITRT---IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432 (945)
Q Consensus 361 -----~~~~~~~~~itr~~~e~~~~~~i~~i---~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~ 432 (945)
+...++++..+.+.+-.+....++.+ .+.|.+++++.++. |+.|+++||-.+.|.+.+.+.+..|.++.
T Consensus 384 Dp~l~G~i~GltL~T~~~~l~~lY~a~l~a~A~GtR~Iie~~~~~g~~---Id~l~~sGG~~KN~llmql~aDvtg~~v~ 460 (544)
T COG1069 384 DPRLKGVITGLTLDTSPESLALLYRALLEATAFGTRAIIETFEDQGIA---IDTLFASGGIRKNPLLMQLYADVTGRPVV 460 (544)
T ss_pred CccceeEEeccccCCCcHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCe---eeEEEecCCcccCHHHHHHHHHhcCCeEE
Confidence 11235667777886666666555544 45666777776664 79999999999999999999999999988
Q ss_pred CCCCCCchhhhhHHHhhhhccCCCCce
Q psy2902 433 RDINPDEAVAVGAAIQGSVLSGDRKDL 459 (945)
Q Consensus 433 ~~~~p~~avA~GAa~~a~~~~~~~~~~ 459 (945)
.+ ..++++++|+|+.|+...+..+++
T Consensus 461 i~-~s~~a~llGsAm~~avAag~~~dl 486 (544)
T COG1069 461 IP-ASDQAVLLGAAMFAAVAAGVHPDL 486 (544)
T ss_pred ee-cccchhhhHHHHHHHHHhccCcch
Confidence 66 568899999999999887754443
|
|
| >COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=6.1e-06 Score=87.82 Aligned_cols=73 Identities=22% Similarity=0.249 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 375 LELLVDELITRTIEPCRI-AIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~-~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.|+++..+...+.+-+.. +++...+. +.|+|+||.+....+.+++++.++.++.++.+|...-|.|||++|..
T Consensus 317 ~EdI~AGl~~Sv~~~v~~~~~~~~~i~----~~iv~~GGva~n~av~~ale~~lg~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 317 PEDILAGLAYSVAENVAEKVIKRVDIE----EPIVLQGGVALNKAVVRALEDLLGRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCC----CCEEEECcchhhHHHHHHHHHHhCCeeecCCccchhhHHHHHHHHhh
Confidence 456666666665554444 55554443 23999999999999999999999999999999999999999999853
|
|
| >PLN03165 chaperone protein dnaJ-related; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=4e-07 Score=80.76 Aligned_cols=59 Identities=36% Similarity=0.747 Sum_probs=49.5
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCceEeEee-ceeeeeecCCCCCCceEEeecCCcccCCCceEee
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ-GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKR 783 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~-~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~ 783 (945)
...|..|+|+|.. +|+.|+|+|.+.... ++++.+.+|+.|+|.|.+ +|..|.|.|...+
T Consensus 41 ~v~C~~C~GsG~~------~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~---~C~~C~G~G~~~~ 100 (111)
T PLN03165 41 TQPCFPCSGTGAQ------VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL---TCTTCQGSGIQPR 100 (111)
T ss_pred CCCCCCCCCCCCc------CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee---eCCCCCCCEEEee
Confidence 4789999999983 899999999986655 446788999999999974 4999999886554
|
|
| >TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.1e-05 Score=88.51 Aligned_cols=70 Identities=19% Similarity=0.258 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHH-HHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 377 LLVDELITRTIEPCR-IAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~-~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
+++..+...+.+.+. .+++..++. +.|+++||.++.+.+.+.+++.++.++..+.+|..+.|+|||++|.
T Consensus 332 DIaAGl~~SIa~rv~~~l~~~~~i~----~~VvftGGva~N~gvv~ale~~Lg~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 332 DVAAAACHSVAEQVYEQQLQEIDVR----EPVILVGGTSLIEGLVKALGDLLGIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCC----CcEEEECChhhhHHHHHHHHHHhCCcEEECCcccHHHHHHHHHHhc
Confidence 334444444444443 234444333 4699999999999999999999999999999999999999999985
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase. |
| >TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.9e-06 Score=91.41 Aligned_cols=69 Identities=16% Similarity=0.191 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhC-----CCCCCCCCCCchhhhhHHHhh
Q psy2902 377 LLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFG-----KDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg-----~~~~~~~~p~~avA~GAa~~a 449 (945)
+++..+...+..-+...+.+. ++ -..|+++||.++.+.+.+.|++.++ .++..+.+|..+.|+|||++|
T Consensus 358 DIaAGL~~SIA~Rv~s~l~r~~~i----~~~VvftGGvA~N~gvv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 358 DILAGLHRAIILRAISIISRSGGI----TDQFTFTGGVAKNEAAVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCC----CCCEEEECCccccHHHHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 333444444444444444443 22 2579999999999999999999994 567778999999999999986
|
This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type). |
| >PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-06 Score=94.76 Aligned_cols=82 Identities=17% Similarity=0.293 Sum_probs=55.1
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHH------------cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEE
Q psy2902 206 EAVITVPAYFNDAQRQATKDAGRI------------AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVS 273 (945)
Q Consensus 206 ~~VitVPa~~~~~qr~~l~~Aa~~------------AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvs 273 (945)
-.+||.++. .++.++++++. ||++...++. |.|++.+.... +.+..++++|+||||++++
T Consensus 90 ahIITg~~~----~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse---Eke~gVa~IDIGgGTT~ia 161 (475)
T PRK10719 90 AVIITGETA----RKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE---ERNTRVLNIDIGGGTANYA 161 (475)
T ss_pred EEEEEechh----HHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh---hccCceEEEEeCCCceEEE
Confidence 356776654 44555555554 6777666666 99988877743 5678899999999999999
Q ss_pred EEEEEeecCCceEEEEEecCCCCCchHHHHH
Q psy2902 274 IIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 274 v~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
++.- +.+. ......+||+.++.
T Consensus 162 Vf~~------G~l~---~T~~l~vGG~~IT~ 183 (475)
T PRK10719 162 LFDA------GKVI---DTACLNVGGRLIET 183 (475)
T ss_pred EEEC------CEEE---EEEEEecccceEEE
Confidence 9974 2211 12234568887764
|
|
| >KOG0714|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.5e-06 Score=91.74 Aligned_cols=104 Identities=28% Similarity=0.484 Sum_probs=89.8
Q ss_pred eeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeE--EeeCHHHHhcCCeEEEecC
Q psy2902 783 RNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYE--MPISFSTAALGGEIEAPTL 860 (945)
Q Consensus 783 ~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~--~~i~l~eal~G~~~~v~~l 860 (945)
....+.+.+++++..|+.+....+|...+. ..+-++.+.+..++|..|.+.+++|... ..+++.+|++|....++++
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~f~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~~~~~ 276 (306)
T KOG0714|consen 198 RSRYLSISIKPGWKEGTKITFPEEGDEEPG-ILPADIEFVVDEKPHPLFSRDGNDLSYSSGYEISLKEALLGVTVFVPTL 276 (306)
T ss_pred ccceeEEeccCCcccccceeccccccccCC-cCcceeEEEEecCCcccccCCCccceecccceeehhhhhcCcceeeecc
Confidence 445678999999999999999999987554 4567888889999999999999999999 9999999999999999999
Q ss_pred CCeEEE-EeC-CCCCCCcEEEECCCCcCC
Q psy2902 861 NGKAFF-VIP-EGTQSGKIFRLRGKGIKN 887 (945)
Q Consensus 861 ~g~~~~-~i~-~~~~~g~~~~i~g~G~~~ 887 (945)
+|...- .+. ....++...+++++|+|.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (306)
T KOG0714|consen 277 DGRSYSLSINKDLIEPGEEDVIPGEGLPC 305 (306)
T ss_pred cCccccCcccccccCCCceeeecCCCCCC
Confidence 986653 333 567999999999999985
|
|
| >TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.3e-05 Score=78.97 Aligned_cols=70 Identities=17% Similarity=0.217 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCC-C----CCCCCCCCchhhhhHHHhh
Q psy2902 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK-D----PRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~-~----~~~~~~p~~avA~GAa~~a 449 (945)
+++..+...+...+...++..+.. -+.|+|+||.++.+.+.+.|++.++. + +..+.+|..+.|+|||++|
T Consensus 188 dI~aGl~~sia~r~~~~~~~~~~~---~~~v~~~GGva~n~~~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 188 NILKGIHESMADRLAKLLKSLGAL---DGTVLCTGGLALDAGLLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCC---CCcEEEECcccccHHHHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 344444455544444455544321 13599999999999999999998842 2 4446688899999999975
|
This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain. |
| >PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.4e-05 Score=78.50 Aligned_cols=196 Identities=20% Similarity=0.226 Sum_probs=108.8
Q ss_pred HHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHH
Q psy2902 225 DAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 225 ~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
+..+..|.++...-.|+++|++...... ..+..+.++|+||||||.+++. .++.+.-+.-.| .|+.++.
T Consensus 103 ~l~~~lgv~V~igGvEAemAi~GALTTP--Gt~~PlaIlDmG~GSTDAsii~-----~~g~v~~iHlAG----AG~mVTm 171 (332)
T PF08841_consen 103 ELEEELGVPVEIGGVEAEMAILGALTTP--GTDKPLAILDMGGGSTDASIIN-----RDGEVTAIHLAG----AGNMVTM 171 (332)
T ss_dssp HHHHHHTSEEEEECEHHHHHHHHHTTST--T--SSEEEEEE-SSEEEEEEE------TTS-EEEEEEE-----SHHHHHH
T ss_pred HHHHHHCCceEEccccHHHHHhcccCCC--CCCCCeEEEecCCCcccHHHhC-----CCCcEEEEEecC----CchhhHH
Confidence 3445678888888899999999987766 4566789999999999999997 567777666666 6777776
Q ss_pred HHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCC-----------cceeeeeceeeccC---------CCCe
Q psy2902 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSS-----------KQTEINEPYIAMSN---------GAPV 364 (945)
Q Consensus 305 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----------~~~~i~i~~~~~~~---------~~~~ 364 (945)
.+... .+++. ...||.+|+---.. ....++-..+.... ++..
T Consensus 172 lI~sE--------LGl~d----------~~lAE~IKkyPlaKVEslfhiR~EDGtv~Ffd~pl~p~~faRvvi~~~~~lv 233 (332)
T PF08841_consen 172 LINSE--------LGLED----------RELAEDIKKYPLAKVESLFHIRHEDGTVQFFDEPLDPDVFARVVILKEDGLV 233 (332)
T ss_dssp HHHHH--------CT-S-----------HHHHHHHHHS-EEEEECTTEEEETTS-EEE-SS---CCCTTSEEEECTTEEE
T ss_pred HHHHh--------hCCCC----------HHHHHHhhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCcee
Confidence 65422 22210 34566666532111 01111111111110 1111
Q ss_pred EEEEEEcHHHHHHHHHHHHHHH-HHHHHHHHHHcCC--CCCCCCcEEEecCccccHHHHHHHHHHhCC--------CCCC
Q psy2902 365 HLNLKITRAKLELLVDELITRT-IEPCRIAIKDAGI--KVSDINDIILVGGMTRMPKVQEKVKEFFGK--------DPRR 433 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~~~i~~i-~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~--------~~~~ 433 (945)
.+...++-+++..+=...-++. ..-..++|++... ...+|+.|+|+||++.---|.+++.+.+.. ++.-
T Consensus 234 Pi~~~~~lEkir~vRr~AK~kVFVtNa~RaL~~vsPtgniR~i~fVVlVGGSALDFEIp~~vtdaLs~y~iVaGRgNIrG 313 (332)
T PF08841_consen 234 PIPGDLSLEKIRSVRREAKEKVFVTNALRALKQVSPTGNIRDIPFVVLVGGSALDFEIPQMVTDALSHYGIVAGRGNIRG 313 (332)
T ss_dssp EESSTS-HHHHHHHHHHHHHHHHHHHHHHHHCCCSTTSSCCC--EEEEESGGGGSSSHHHHHHHHHCTTT-EEEE--GGG
T ss_pred ecCCCccHHHHHHHHHHhhhhhhHHHHHHHHHhcCCCCCcccCceEEEecCchhhhhhHHHHHHHHhhCcceeecccccc
Confidence 1222233333333322222222 1223345554332 234789999999999998899999888732 2223
Q ss_pred CCCCCchhhhhHHHhh
Q psy2902 434 DINPDEAVAVGAAIQG 449 (945)
Q Consensus 434 ~~~p~~avA~GAa~~a 449 (945)
..-|..|||.|.++.-
T Consensus 314 ~eGPRNAVATGLvlsy 329 (332)
T PF08841_consen 314 VEGPRNAVATGLVLSY 329 (332)
T ss_dssp TSTTSTHHHHHHHHHH
T ss_pred ccCchHHHHHHHHHhh
Confidence 4568899999998643
|
This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C. |
| >COG0554 GlpK Glycerol kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.2e-05 Score=85.13 Aligned_cols=196 Identities=18% Similarity=0.194 Sum_probs=110.5
Q ss_pred CccceecchhHHHHHHhccCCCCC-----CCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCC-----CchHH
Q psy2902 232 LEVKRIINEPTAAALAFGLDKSGK-----SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF-----LGGED 301 (945)
Q Consensus 232 l~~v~li~Ep~AAAl~~~~~~~~~-----~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~-----lGG~~ 301 (945)
+++..++-+..||.++-+-..+-. ....++....|.-- ....++.+..++..-+.. -|+-.
T Consensus 237 vPI~g~~GDQQAALfGq~c~~pG~~K~TYGTG~F~l~ntG~~~---------~~S~~~LLtTIa~~l~gk~~YALEGsif 307 (499)
T COG0554 237 VPITGVAGDQQAALFGQGCFEPGMAKNTYGTGCFLLMNTGEKP---------VRSENGLLTTIAWGLDGKVTYALEGSIF 307 (499)
T ss_pred eeeccccchhHHHHhhcccCCcCccccccccceeeeeccCCcc---------ccCCCCceeEEEeccCCeEEEEEeccee
Confidence 456678888999988765544311 12233444443320 001222333333221100 14445
Q ss_pred HHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceee---------ccCCCCeEEEEEEcH
Q psy2902 302 FDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIA---------MSNGAPVHLNLKITR 372 (945)
Q Consensus 302 iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~---------~~~~~~~~~~~~itr 372 (945)
+..+-++||.+.++-.. +.. .....|+++ .. +.....+|.+. ...+...+++-..++
T Consensus 308 ~aGaavqWLrd~L~~i~------~a~---~~e~~A~~~----~~-~~gVy~VPAFtGLgAPyWd~~aRGai~Gltrgt~~ 373 (499)
T COG0554 308 VAGAAVQWLRDGLGLID------DAS---DSEELAESV----ED-NGGVYFVPAFTGLGAPYWDSDARGAIFGLTRGTTK 373 (499)
T ss_pred ehhhHHHHHHHhcCccC------chh---HHHHHHhcc----CC-CCceEEEcccccCCCCCcCcccceeEEeeCCCCCH
Confidence 55566789988765211 111 111122222 22 23445555543 111223455556677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 373 AKLELLVDELITRTIEPCRIAIK-DAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 373 ~~~e~~~~~~i~~i~~~i~~~l~-~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
++|-+..-+.+..-..-|.++|+ +++. .++.+-+=||.+++.++.+.+++.+|.++.++.+ .|..|+|||+.|..
T Consensus 374 ~hi~RA~LEsiayQ~~dv~~aM~~d~~~---~~~~LrvDGG~s~n~~lmQfqADilg~~V~Rp~~-~EtTAlGaA~lAGl 449 (499)
T COG0554 374 AHIARATLESIAYQTRDVLEAMEKDSGI---KLTRLRVDGGASRNNFLMQFQADILGVPVERPVV-LETTALGAAYLAGL 449 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---CceeEEEcCccccchhHHHHHHHHhCCeeecccc-chhhHHHHHHHHhh
Confidence 77776655544443333444443 3443 4788999999999999999999999999987664 67899999999988
Q ss_pred ccC
Q psy2902 452 LSG 454 (945)
Q Consensus 452 ~~~ 454 (945)
..|
T Consensus 450 a~G 452 (499)
T COG0554 450 AVG 452 (499)
T ss_pred hhC
Confidence 776
|
|
| >PRK13317 pantothenate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00022 Score=76.12 Aligned_cols=47 Identities=26% Similarity=0.369 Sum_probs=42.2
Q ss_pred CCcEEEec-CccccHHHHHHHHHHh---CCCCCCCCCCCchhhhhHHHhhh
Q psy2902 404 INDIILVG-GMTRMPKVQEKVKEFF---GKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 404 i~~ViLvG-G~s~~p~v~~~l~~~f---g~~~~~~~~p~~avA~GAa~~a~ 450 (945)
++.|+++| |.++.|.+++.+.+.+ +.++..+.+|..+.|+|||++|.
T Consensus 223 ~~~Ivf~G~gla~n~~l~~~l~~~l~~~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 223 IENIVYIGSTLTNNPLLQEIIESYTKLRNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCeEEEECcccccCHHHHHHHHHHHhcCCceEEecCCCchhHHHHHHHHhh
Confidence 57899999 7999999999999988 57777889999999999999875
|
|
| >KOG2517|consensus | Back alignment and domain information |
|---|
Probab=98.17 E-value=6.1e-05 Score=84.93 Aligned_cols=89 Identities=21% Similarity=0.298 Sum_probs=66.3
Q ss_pred eEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhh
Q psy2902 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAV 443 (945)
Q Consensus 364 ~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~ 443 (945)
..++...+.+++-.++-+.+..=...|.++++..+. ..|+.+.+.||.|+.|.+.+.+++.+|.++..+.+++. ++.
T Consensus 377 ~Gls~~ts~~hia~A~leai~fqtr~Il~am~~~~~--~~i~~L~~~GG~s~N~ll~Q~~ADi~g~pv~~p~~~e~-~~~ 453 (516)
T KOG2517|consen 377 IGLSQDTSKEHLARAALEAIAFQTREILEAMERDGG--HPISTLRVCGGLSKNPLLMQLQADILGLPVVRPQDVEA-VAL 453 (516)
T ss_pred EEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCcceeeeccccccCHHHHHHHHHHhCCccccccchhH-HHH
Confidence 345556667776654444443333444455554432 45788999999999999999999999999998888777 999
Q ss_pred hHHHhhhhccCC
Q psy2902 444 GAAIQGSVLSGD 455 (945)
Q Consensus 444 GAa~~a~~~~~~ 455 (945)
|||+.|+..++.
T Consensus 454 GaA~l~~~a~~~ 465 (516)
T KOG2517|consen 454 GAAMLAGAASGK 465 (516)
T ss_pred HHHHHHHhhcCC
Confidence 999999988874
|
|
| >PRK10640 rhaB rhamnulokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=2e-05 Score=91.75 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 371 TRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
+|.+|-+++-+.+......+.+.|++. +. .++.|.++||+++++.|.|++++.+|.++.... .++.|+|||+.|
T Consensus 345 ~~~~l~RAvlEgva~~~r~~l~~l~~~~g~---~~~~i~~~GGga~s~~w~Qi~ADvlg~pV~~~~--~ea~alGaa~~a 419 (471)
T PRK10640 345 SDAELARCIFDSLALLYADVLHELAQLRGE---PFSQLHIVGGGCQNALLNQLCADACGIRVIAGP--VEASTLGNIGIQ 419 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---CcceEEEECChhhhHHHHHHHHHHhCCCeeeCC--hhHHHHHHHHHH
Confidence 888998888888877777777777764 43 368899999999999999999999999996443 378999999999
Q ss_pred hhccCCCC
Q psy2902 450 SVLSGDRK 457 (945)
Q Consensus 450 ~~~~~~~~ 457 (945)
+...|..+
T Consensus 420 ~~a~G~~~ 427 (471)
T PRK10640 420 LMTLDELN 427 (471)
T ss_pred HHHcCCcC
Confidence 98777443
|
|
| >KOG0676|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=5.9e-05 Score=82.33 Aligned_cols=116 Identities=15% Similarity=0.087 Sum_probs=69.2
Q ss_pred eChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH-HHcCCccceecchhHHHHHHhccCCCCCCC
Q psy2902 179 LAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSD 257 (945)
Q Consensus 179 ~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~ 257 (945)
++..+-+..+..++...-.....+ ...+++|-|..|...-|+.|.+.. +..+.+.+.+ .. .|..++++.
T Consensus 75 v~~wd~me~iw~~if~~~L~~~Pe-e~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yv-a~-qavlya~g~------- 144 (372)
T KOG0676|consen 75 VTDWDDMEKIWHHLFYSELLVAPE-EHPVLLTEPPLNPKANREKLTQIMFETFNVPALYV-AI-QAVLYASGR------- 144 (372)
T ss_pred ccchHHHHHHHHHHHHHhhccCcc-cCceEeecCCCCchHhHHHHHHHhhhhcCccHhHH-HH-HHHHHHcCC-------
Confidence 444444466777776322222222 357899999999999999887764 4445554444 22 333333333
Q ss_pred ceEEEEEeCCcceEEE-EEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 258 RNIVVYDLGGGTFDVS-IIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 258 ~~vlVvD~GggT~dvs-v~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
.+=+|+|+|.|-+++. +++- +.+...-....+||.++++.+...|.+
T Consensus 145 ttG~VvD~G~gvt~~vPI~eG--------~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 145 TTGLVVDSGDGVTHVVPIYEG--------YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred eeEEEEEcCCCceeeeecccc--------cccchhhheecccchhhHHHHHHHHHh
Confidence 3458999999966444 4431 112222334567999999877766665
|
|
| >PF00684 DnaJ_CXXCXGXG: DnaJ central domain; InterPro: IPR001305 The hsp70 chaperone machine performs many diverse roles in the cell, including folding of nascent proteins, translocation of polypeptides across organelle membranes, coordinating responses to stress, and targeting selected proteins for degradation | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.1e-06 Score=69.95 Aligned_cols=46 Identities=28% Similarity=0.745 Sum_probs=34.5
Q ss_pred eccccccCCCCCccccccCc---------CcccCCCCCCCceEeEeeceeee-eecCCCCCCce
Q psy2902 712 RVPSWDICKSCYGNGAKKGT---------SPISCFTCSGQGQVRMQQGFFSI-QQTCPKCQGAG 765 (945)
Q Consensus 712 ~~~~~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~-~~~C~~C~G~g 765 (945)
......+|+.|+|+|..... .+++|+.|+|+|++ + .++|+.|+|.|
T Consensus 11 ~~~~~~~C~~C~G~G~~~~~~~~~~~~~~~~~~C~~C~G~G~~--------i~~~~C~~C~G~g 66 (66)
T PF00684_consen 11 PGKKPKTCPQCNGSGQVTRRQQTPGGVFQMQQTCPKCGGTGKI--------IEKDPCKTCKGSG 66 (66)
T ss_dssp STTT-EE-TTSSSSSEEEEEEESSSTTEEEEEE-TTTSSSSEE---------TSSB-SSSTTSS
T ss_pred CCCCCcCCcCCCCeeEEEEEEeCCCeEEEEEEECCCCcceeeE--------ECCCCCCCCCCcC
Confidence 34456789999999997542 57899999999999 6 89999999986
|
DnaJ is a member of the hsp40 family of molecular chaperones, which is also called the J-protein family, the members of which regulate the activity of hsp70s. DnaJ (hsp40) binds to DnaK (hsp70) and stimulates its ATPase activity, generating the ADP-bound state of DnaK, which interacts stably with the polypeptide substrate []. Besides stimulating the ATPase activity of DnaK through its J-domain, DnaJ also associates with unfolded polypeptide chains and prevents their aggregation []. DnaJ consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acid residues, a glycine and phenylalanine-rich domain ('G/F' domain), a central cysteine rich domain (CR-type zinc finger) containing four repeats of a CXXCXGXG motif which can coordinate two zinc atom and a C-terminal domain (CTD) []. This entry represents the central cysteine-rich (CR) domain of DnaJ proteins. This central cysteine rich domain (CR-type zinc finger) has an overall V-shaped extended beta-hairpin topology and contains four repeats of the motif CXXCXGXG where X is any amino acid. The isolated cysteine rich domain folds in zinc dependent fashion. Each set of two repeats binds one unit of zinc. Although this domain has been implicated in substrate binding, no evidence of specific interaction between the isolated DnaJ cysteine rich domain and various hydrophobic peptides has been found [].; GO: 0031072 heat shock protein binding, 0051082 unfolded protein binding; PDB: 1NLT_A 2CTT_A 1EXK_A. |
| >COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0024 Score=72.21 Aligned_cols=92 Identities=23% Similarity=0.236 Sum_probs=64.1
Q ss_pred eEEEEEEcHHHHHHHHHHH---HHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC-------
Q psy2902 364 VHLNLKITRAKLELLVDEL---ITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR------- 433 (945)
Q Consensus 364 ~~~~~~itr~~~e~~~~~~---i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~------- 433 (945)
.++.+.|.-.++++.+-.. +....+.+-++++.. +-|.++|+|--||.|.++..++.....++.+
T Consensus 741 ~d~pl~i~~~ql~e~~ls~~~~i~~~f~al~EaIn~y-----~cDVlLlTGRPsrlPgvqalfr~~~pvp~~rilpl~~Y 815 (1014)
T COG4457 741 LDVPLAIDLSQLHECFLSGDYDITGVFDALCEAINHY-----DCDVLLLTGRPSRLPGVQALFRHLQPVPVNRILPLDDY 815 (1014)
T ss_pred eccceeccHHHHHHHHhhCcccccchHHHHHHHHhhh-----cccEEEEcCCcccCccHHHHHhhcCCCCCCceEeccce
Confidence 3556778888887766554 455555555555543 3478999999999999999999887554422
Q ss_pred -------------CCCCCchhhhhHHHhhhhccCCCCceE
Q psy2902 434 -------------DINPDEAVAVGAAIQGSVLSGDRKDLL 460 (945)
Q Consensus 434 -------------~~~p~~avA~GAa~~a~~~~~~~~~~~ 460 (945)
..||...+|.||-+.+..+.-..+++.
T Consensus 816 rvg~WYPF~k~grIddPKtTAaVGAMLC~Lsl~~rl~nF~ 855 (1014)
T COG4457 816 RVGTWYPFRKQGRIDDPKTTAAVGAMLCALSLELRLPNFY 855 (1014)
T ss_pred eccceecccccCcCCCcchHHHHHHHHHHHHhhccCccee
Confidence 358999999999877765444444443
|
|
| >PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=97.80 E-value=6.3e-05 Score=77.01 Aligned_cols=83 Identities=29% Similarity=0.340 Sum_probs=64.0
Q ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhh
Q psy2902 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDA-GIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAV 443 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~-~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~ 443 (945)
+++...++.++-+.+-+.+......+.+.|++. +.. ++.|+++||.++++.|.+++.+.|+.++.+..+ .++.|+
T Consensus 113 gl~~~~~~~~~~rAv~Egia~~~~~~~~~l~~~~~~~---~~~i~~~GG~~~n~~~~q~~Advl~~~V~~~~~-~e~~a~ 188 (198)
T PF02782_consen 113 GLSSDTTRADLARAVLEGIAFSLRQILEELEELTGIP---IRRIRVSGGGAKNPLWMQILADVLGRPVVRPEV-EEASAL 188 (198)
T ss_dssp EEETTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC---ESEEEEESGGGGSHHHHHHHHHHHTSEEEEESS-STHHHH
T ss_pred cCCcccCHHHHHHHHHHhHHHHHHHhhhhcccccccc---ceeeEeccccccChHHHHHHHHHhCCceEeCCC-CchHHH
Confidence 444455677777766666555555555666554 554 689999999999999999999999998875544 899999
Q ss_pred hHHHhhhh
Q psy2902 444 GAAIQGSV 451 (945)
Q Consensus 444 GAa~~a~~ 451 (945)
|||+.|+.
T Consensus 189 GaA~~A~~ 196 (198)
T PF02782_consen 189 GAALLAAV 196 (198)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999974
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A .... |
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.55 E-value=5.4e-05 Score=84.07 Aligned_cols=14 Identities=21% Similarity=0.354 Sum_probs=9.9
Q ss_pred CCCCCcEEEECCCC
Q psy2902 871 GTQSGKIFRLRGKG 884 (945)
Q Consensus 871 ~~~~g~~~~i~g~G 884 (945)
.++.|.++++-|+=
T Consensus 258 ~IevGdiV~ViG~V 271 (715)
T COG1107 258 EIEVGDIVEVIGEV 271 (715)
T ss_pred CCCCCceEEEEEEE
Confidence 46777777777763
|
|
| >TIGR02642 phage_xxxx uncharacterized phage protein | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=71.61 Aligned_cols=34 Identities=24% Similarity=0.433 Sum_probs=25.2
Q ss_pred cCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEc
Q psy2902 770 HPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRST 804 (945)
Q Consensus 770 ~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~ 804 (945)
++|..|.|.|.+.......+++ .|+.+|++|++.
T Consensus 116 ~~C~~C~G~G~v~~~~~~~~k~-~g~~~g~~it~~ 149 (186)
T TIGR02642 116 RECDTCAGTGRFRPTVEDLLKS-FGVDSGAAIVLK 149 (186)
T ss_pred CCCCCCCCccEEeeeEEEEEEe-eeccCCceeeHH
Confidence 4555555555666777788888 899999999875
|
This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q. |
| >KOG0677|consensus | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.006 Score=61.39 Aligned_cols=223 Identities=17% Similarity=0.172 Sum_probs=126.8
Q ss_pred CCcEEEEcCCCCCHHHHHHHHHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecC
Q psy2902 204 ITEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDG 282 (945)
Q Consensus 204 ~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~ 282 (945)
-.++.+|-|..-....|+.|-+. .+.-||.-+.+.-...-+.++-+... =+|+|-|.|-+.+.-+--
T Consensus 101 ~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~t-------GvVvDSGDGVTHi~PVye----- 168 (389)
T KOG0677|consen 101 NCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLT-------GVVVDSGDGVTHIVPVYE----- 168 (389)
T ss_pred cCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccc-------eEEEecCCCeeEEeeeec-----
Confidence 44788999998888888888665 57789988877666666665555443 488999999888775431
Q ss_pred CceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc-----------ceee
Q psy2902 283 EKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK-----------QTEI 351 (945)
Q Consensus 283 ~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~-----------~~~i 351 (945)
.-.+. .-..-..+.|++++.-|++++..+= +...-..+ .+..+++|+.|..-. ++++
T Consensus 169 ~~~l~--HLtrRldvAGRdiTryLi~LLl~rG---YafN~tAD-------FETVR~iKEKLCYisYd~e~e~kLalETTv 236 (389)
T KOG0677|consen 169 GFVLP--HLTRRLDVAGRDITRYLIKLLLRRG---YAFNHTAD-------FETVREIKEKLCYISYDLELEQKLALETTV 236 (389)
T ss_pred ceehh--hhhhhccccchhHHHHHHHHHHhhc---cccccccc-------hHHHHHHHhhheeEeechhhhhHhhhhhee
Confidence 11111 1112345689999999988876541 11111111 233445555554321 1112
Q ss_pred eeceeeccCCCCeEEEEEEcHHHHH---HHHHHHHH-----HHHHHHHHHHHHcCCCCC--CCCcEEEecCccccHHHHH
Q psy2902 352 NEPYIAMSNGAPVHLNLKITRAKLE---LLVDELIT-----RTIEPCRIAIKDAGIKVS--DINDIILVGGMTRMPKVQE 421 (945)
Q Consensus 352 ~i~~~~~~~~~~~~~~~~itr~~~e---~~~~~~i~-----~i~~~i~~~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~ 421 (945)
-++.... +.+-.+.+--+.|| .+++|.+- .+.+++-..++.+.++.. --.+|+|+||++--|.+..
T Consensus 237 Lv~~YtL----PDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMYPGLPS 312 (389)
T KOG0677|consen 237 LVESYTL----PDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMYPGLPS 312 (389)
T ss_pred eeeeeec----CCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccCCCCcH
Confidence 1111111 11223555555554 44555331 233444455555544321 1368999999999998888
Q ss_pred HHHHHhC----------C---------CCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 422 KVKEFFG----------K---------DPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 422 ~l~~~fg----------~---------~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
.|++.+. . .+.-+..-...|-+|.|.+|.++..
T Consensus 313 RLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD 364 (389)
T KOG0677|consen 313 RLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKD 364 (389)
T ss_pred HHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcC
Confidence 7766541 1 1111222245788888888876654
|
|
| >TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=77.14 Aligned_cols=85 Identities=15% Similarity=0.034 Sum_probs=66.1
Q ss_pred CcccccCCCceeEEeeCHHHHhcCCeEEEec----C--CC--------eEEEEeCCCCCCCcEEEECCCCcCCCCCCCCc
Q psy2902 829 KVFERDGDDLHYEMPISFSTAALGGEIEAPT----L--NG--------KAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPG 894 (945)
Q Consensus 829 ~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~----l--~g--------~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~G 894 (945)
+.|....-||.+.+.|+|.+++.|++.+|.. . +| ...|.||+|++.|+++|++|+|-...+ + .|
T Consensus 650 ~~~~~~~~dI~y~l~vtLEeLY~G~tKkIKitR~V~~g~G~ktvkE~ktLeVkIPpGVkdGqkIRf~GeGDegpg-g-~G 727 (871)
T TIGR03835 650 PNLDETNVNLVYEEEVPQILFFNNQIKEIKYTRHTVDGNTESTTNEAITLEIQLPITSQLNISAIFKGFGHDFGN-G-CG 727 (871)
T ss_pred CCccccccceEEecccCHHHHhCCCeEEEEEEEeeccCCCcceeeeeEEEEEecCCCCCCCCEEEeccccCCCCC-C-CC
Confidence 4455666799999999999999999988832 2 22 245679999999999999999987533 2 49
Q ss_pred cEEEEEEEECCCCCCHHHHHH
Q psy2902 895 DLFCHVTIETPVQLTEYQKKL 915 (945)
Q Consensus 895 dl~v~~~i~~p~~l~~~~~~~ 915 (945)
||||.+++..+..+..+..+|
T Consensus 728 DLyVvIkVKPHp~FrRdGdDL 748 (871)
T TIGR03835 728 DLKVVFKVIPSNFFQIKNDGL 748 (871)
T ss_pred CEEEEEEEcCCCCeEEECCeE
Confidence 999999999877765544333
|
This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility. |
| >KOG0797|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0059 Score=67.38 Aligned_cols=121 Identities=16% Similarity=0.169 Sum_probs=85.6
Q ss_pred eeChhhHHHHHHHHHHHHHHHHhCCCCC-----cEEEEcCCCCCHHHH-HHHHHHHHHcCCccceecchhHHHHHHhccC
Q psy2902 178 KLAPPQISAEVLRKMKKTAEDYLGGEIT-----EAVITVPAYFNDAQR-QATKDAGRIAGLEVKRIINEPTAAALAFGLD 251 (945)
Q Consensus 178 ~~~~~ev~a~~L~~l~~~a~~~~~~~~~-----~~VitVPa~~~~~qr-~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~ 251 (945)
..+..++++++-+-+.......+..+.. .+|+-||-.|..... +.+.-.....||..+.++-|..||.++.++.
T Consensus 196 y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGls 275 (618)
T KOG0797|consen 196 YYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGLS 275 (618)
T ss_pred chhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCcc
Confidence 3455566655444444444444544433 589999999987665 4556667888999999999999999988776
Q ss_pred CCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH
Q psy2902 252 KSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312 (945)
Q Consensus 252 ~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~ 312 (945)
. .-|||+|+-+|.+++++-+-...+..+.. ..||.||++.|+-+++.
T Consensus 276 s-------~CVVdiGAQkTsIaCVEdGvs~~ntri~L-------~YGGdDitr~f~~ll~r 322 (618)
T KOG0797|consen 276 S-------ACVVDIGAQKTSIACVEDGVSLPNTRIIL-------PYGGDDITRCFLWLLRR 322 (618)
T ss_pred c-------eeEEEccCcceeEEEeecCccccCceEEe-------ccCCchHHHHHHHHHHh
Confidence 4 47789999999999997543333333332 45999999998866554
|
|
| >PLN03165 chaperone protein dnaJ-related; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00029 Score=62.77 Aligned_cols=40 Identities=35% Similarity=0.890 Sum_probs=33.5
Q ss_pred cCCCCCccccccCc------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 718 ICKSCYGNGAKKGT------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 718 ~C~~C~G~G~~~~~------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
.|+.|+|+|..... .+++|+.|+|+|+. .|+.|.|+|++.
T Consensus 54 ~C~~C~G~G~v~~~~~g~~q~~~~C~~C~G~Gk~-----------~C~~C~G~G~~~ 99 (111)
T PLN03165 54 VCRFCVGSGNVTVELGGGEKEVSKCINCDGAGSL-----------TCTTCQGSGIQP 99 (111)
T ss_pred CCCCCcCcCeEEEEeCCcEEEEEECCCCCCccee-----------eCCCCCCCEEEe
Confidence 89999999986432 36799999999975 399999999864
|
|
| >KOG0680|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.035 Score=58.11 Aligned_cols=99 Identities=14% Similarity=0.046 Sum_probs=56.0
Q ss_pred CCcEEEEcCCCCC-HHHHHHHHHHHHHcCCccceecchhHHHHHHhc---cCCC---CCCCceEEEEEeCCcceEEEEEE
Q psy2902 204 ITEAVITVPAYFN-DAQRQATKDAGRIAGLEVKRIINEPTAAALAFG---LDKS---GKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 204 ~~~~VitVPa~~~-~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~---~~~~---~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
-.++++|-|.+-- ..|.....-..+..+++.+. .-+.|+.+++. .+.. .......+|+|.|-+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~--kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVL--KTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccceEe--ecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 3478999986543 44444445555666766533 33333333322 2221 12356899999999877766443
Q ss_pred EEeecCCceEEEEEecCCCCCchHHHHHHHHHHHH
Q psy2902 277 IADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYIL 311 (945)
Q Consensus 277 ~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~ 311 (945)
-.....+...+ ..+||..++..|.+++.
T Consensus 171 ~g~~~~qaV~R-------iDvGGK~LTn~LKE~iS 198 (400)
T KOG0680|consen 171 KGIPYYQAVKR-------IDVGGKALTNLLKETIS 198 (400)
T ss_pred cCcchhhceEE-------eecchHHHHHHHHHHhh
Confidence 21111122222 35699999999988875
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00051 Score=76.57 Aligned_cols=58 Identities=36% Similarity=0.697 Sum_probs=30.9
Q ss_pred ccccceeeEeeccccccCCCCCccccccCc------------------CcccCCCCCCCceEeEeeceeeeeecCCCCCC
Q psy2902 702 QAAYGFNTSIRVPSWDICKSCYGNGAKKGT------------------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQG 763 (945)
Q Consensus 702 ~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~------------------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G 763 (945)
|..|+++..+.+. ...|+.|+|+|..... ...+|+.|.|.|.+. .-.+|+.|+|
T Consensus 5 C~~C~g~G~i~v~-~e~c~vc~gtG~~~~~d~k~~~~~~~~~~D~~~~~~~pc~~c~gkG~V~-------v~~~c~~c~G 76 (715)
T COG1107 5 CPECGGKGKIVVG-EEECPVCHGTGFSDDFDPKGVANLSRETVDLFASFEIPCPKCRGKGTVT-------VYDTCPECGG 76 (715)
T ss_pred ccccCCCceEeee-eeecccccccccccccChhhhhhhhhccccccccCCCCCCeeccceeEE-------EEeecccCCC
Confidence 3344544444332 3556666666654211 144666666666652 4456666666
Q ss_pred ceEE
Q psy2902 764 AGKV 767 (945)
Q Consensus 764 ~g~~ 767 (945)
+|.+
T Consensus 77 ~gkv 80 (715)
T COG1107 77 TGKV 80 (715)
T ss_pred ceeE
Confidence 6664
|
|
| >PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.15 Score=54.79 Aligned_cols=71 Identities=17% Similarity=0.244 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh-----CCCCCCCCCCCchhhhhHHHhh
Q psy2902 376 ELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-----GKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 376 e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-----g~~~~~~~~p~~avA~GAa~~a 449 (945)
.+++....+.+.+.+..++.+..... ..|+|+||..+.+.+.+.+.+.+ ..++..+..|....|.|||++|
T Consensus 196 ~~Il~~a~~~la~~i~~~~~~~~~~~---~~v~l~GGv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 196 RDILAEAADELAELIKAVLKRLGPEK---EPVVLSGGVFKNSPLVKALRDALKEKLPKVPIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTCCC---CSEEEESGGGGCHHHHHHHGGGS-HHHHCCTCECECCGSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCC---CeEEEECCccCchHHHHHHHHHHHHhcCCCceEECCCCCccHHHHHHHhC
Confidence 35556666666667777777665432 22999999999987777774444 3445567789999999999986
|
The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A. |
| >KOG2813|consensus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.001 Score=68.40 Aligned_cols=61 Identities=31% Similarity=0.801 Sum_probs=37.1
Q ss_pred cccCCCCCccccccCc-------------------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccC
Q psy2902 716 WDICKSCYGNGAKKGT-------------------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCN 776 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~-------------------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~ 776 (945)
...|+.|+|.|..... +...|..|+|+|.. .|+.|.|+|. .+|..|.
T Consensus 198 ~~vc~gc~g~G~~~y~~~~~m~c~sc~G~~~~k~gt~~~C~~C~G~G~~-----------~C~tC~grG~---k~C~TC~ 263 (406)
T KOG2813|consen 198 AMVCHGCSGSGSNSYGIGTPMHCMSCTGVPPPKIGTHDLCYMCHGRGIK-----------ECHTCKGRGK---KPCTTCS 263 (406)
T ss_pred ceeccCcCCCCccccccCcceecccccCCCCCCCCccchhhhccCCCcc-----------cCCcccCCCC---ccccccc
Confidence 3567888877742211 23445555555554 5777777775 5788888
Q ss_pred CCceEeeeeeEEEE
Q psy2902 777 GIGRIKRNKTLEVK 790 (945)
Q Consensus 777 G~g~~~~~~~l~v~ 790 (945)
|.|-...-..+.|.
T Consensus 264 gtgsll~~t~~vV~ 277 (406)
T KOG2813|consen 264 GTGSLLNYTRIVVY 277 (406)
T ss_pred CccceeeeEEEEEE
Confidence 87766554444444
|
|
| >PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.017 Score=64.83 Aligned_cols=72 Identities=19% Similarity=0.203 Sum_probs=45.9
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHcCCcccee---cchhHHHHHHhccCCC-CCCCceEEEEEeCCcceEEEEEEE
Q psy2902 206 EAVITVPAYFNDAQRQATKDAGRIAGLEVKRI---INEPTAAALAFGLDKS-GKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 206 ~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~l---i~Ep~AAAl~~~~~~~-~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
-++||==+--.+.+++.+...+..||==++.- -.|..-|+-..+.... ......|+=+|+||||+.+++++-
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~ 162 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDN 162 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEEC
Confidence 35677665666777888888888887322221 1344444443332221 244677888999999999999985
|
The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO. |
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0046 Score=64.97 Aligned_cols=58 Identities=31% Similarity=0.322 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 577 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
-++.||-+..+++++.|++|.-..+.... -+.++|+.|..|.++|+|+|+|+.+|...
T Consensus 406 AsKqEI~KAYRKlAqkWHPDNFqdEeEKK--------kAEKKFIDIAAAKEVLsd~EkRrqFDnGe 463 (504)
T KOG0624|consen 406 ASKQEITKAYRKLAQKWHPDNFQDEEEKK--------KAEKKFIDIAAAKEVLSDPEKRRQFDNGE 463 (504)
T ss_pred ccHHHHHHHHHHHHHhcCCccccCHHHHH--------HHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence 57889999999999988887643221111 13358999999999999999999998743
|
|
| >KOG0718|consensus | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.0025 Score=69.45 Aligned_cols=64 Identities=39% Similarity=0.553 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
.-|+|||.+..++...+-++|+-.. .+....+.++|..+-.||++|+|+.+|.|||.+|+.|++
T Consensus 20 dAt~eeI~~AYrr~~~lfHPDkh~d--------pd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 20 DATDEEIKKAYRRLSRLFHPDKHTD--------PDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred ccCHHHHHHHHHHHHHhcCCcccCC--------hhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 4689999999999999988887431 122223445788888999999999999999999999987
|
|
| >TIGR02642 phage_xxxx uncharacterized phage protein | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.004 Score=61.29 Aligned_cols=28 Identities=29% Similarity=0.837 Sum_probs=18.6
Q ss_pred cccCCCCCCCceEeEeeceeeee--ecCCCCCCceEEe
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQ--QTCPKCQGAGKVI 768 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~--~~C~~C~G~g~~~ 768 (945)
..+|+.|+|+|.+ +. .+|+.|+|.|++.
T Consensus 99 ~~~C~~C~G~G~~--------i~~~~~C~~C~G~G~v~ 128 (186)
T TIGR02642 99 SCKCPRCRGTGLI--------QRRQRECDTCAGTGRFR 128 (186)
T ss_pred CCcCCCCCCeeEE--------ecCCCCCCCCCCccEEe
Confidence 5567777777766 33 5677777777753
|
This uncharacterized protein is found in prophage regions of Shewanella oneidensis MR-1, Vibrio vulnificus YJ016, Yersinia pseudotuberculosis IP 32953, and Aeromonas hydrophila ATCC7966. It appears to have regions of sequence similarity to phage lambda antitermination protein Q. |
| >PRK03011 butyrate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.14 Score=56.88 Aligned_cols=46 Identities=26% Similarity=0.322 Sum_probs=34.4
Q ss_pred CCCcEEEecCccccHHHHHHHHHHhC----CCCCCCCCCCchhhhhHHHh
Q psy2902 403 DINDIILVGGMTRMPKVQEKVKEFFG----KDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~v~~~l~~~fg----~~~~~~~~p~~avA~GAa~~ 448 (945)
+++.|+|+||.+..+.+.+.+.+.+. ..+....+-.+|.|.||+..
T Consensus 295 dpD~IVlgGGI~~~~~l~~~I~~~l~~~~pv~i~p~~~e~~A~a~GA~rv 344 (358)
T PRK03011 295 KVDAIVLTGGLAYSKRLVERIKERVSFIAPVIVYPGEDEMEALAEGALRV 344 (358)
T ss_pred CCCEEEEeCccccCHHHHHHHHHHHHhhCCeEEEeCCCHHHHHHHHHHHH
Confidence 57899999999999999999888774 22233444457999998743
|
|
| >PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.66 Score=52.31 Aligned_cols=59 Identities=19% Similarity=0.288 Sum_probs=40.2
Q ss_pred EEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHH
Q psy2902 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424 (945)
Q Consensus 365 ~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~ 424 (945)
.-.+.+|..+++++... -..+..-++-+|++++++..||+.|+|.||+..---..+.+.
T Consensus 290 ~~~i~itq~DIr~~qlA-KaAi~aGi~~Ll~~agi~~~di~~v~lAG~FG~~l~~~~a~~ 348 (412)
T PF14574_consen 290 GDDIYITQKDIREFQLA-KAAIRAGIEILLEEAGISPEDIDRVYLAGGFGNYLDPESAIR 348 (412)
T ss_dssp SS-EEEEHHHHHHHHHH-HHHHHHHHHHHHHHTT--GGG--EEEEECSS-SEEEHHHHHH
T ss_pred CCCEEEeHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHccEEEEeCcccccCCHHHHhh
Confidence 34689999999876432 234455677789999999999999999999998766666664
|
|
| >PRK10854 exopolyphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.39 Score=56.57 Aligned_cols=57 Identities=21% Similarity=0.348 Sum_probs=38.8
Q ss_pred HHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 220 RQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 220 r~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
...+.++-+.+|+++-.+=.|-+|...+.+...........+|+|+|||++.+++++
T Consensus 99 ~~fl~~i~~~tGl~i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~ 155 (513)
T PRK10854 99 TDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGE 155 (513)
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEec
Confidence 345556667779987555555555555555554433345689999999999999986
|
|
| >PTZ00341 Ring-infected erythrocyte surface antigen; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.018 Score=69.15 Aligned_cols=60 Identities=30% Similarity=0.454 Sum_probs=50.3
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
.-|..+|.+..++++...++|+ |+.. .+..+|..+++||++|||+++|+.||.+|..|+.
T Consensus 584 dAS~~EIKKAYRKLAlkyHPDK---------N~~~---~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 584 NADMKEISERYFKLAENYYPPK---------RSGN---EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCHHHHHHHHHHHHHHhCCCC---------CCCc---hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 4578999999999999999986 3321 2456899999999999999999999999988765
|
|
| >KOG2531|consensus | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.089 Score=57.82 Aligned_cols=57 Identities=19% Similarity=0.335 Sum_probs=48.2
Q ss_pred HHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 395 KDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 395 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
+..+......+.|+.|||.|+...|-+.|++.||.++... +..+++|+|+|+.|+..
T Consensus 434 ~~lg~~~~~~~rilvtGGAS~N~~Ilq~iadVf~apVy~~-~~~~sa~lG~A~ra~ya 490 (545)
T KOG2531|consen 434 EPLGFKSNPPTRILVTGGASRNEAILQIIADVFGAPVYTI-EGPNSAALGGAYRAAYA 490 (545)
T ss_pred ccccCCCCCCceEEEecCccccHHHHHHHHHHhCCCeEee-cCCchhhHHHHHHHHHH
Confidence 3455555677899999999999999999999999999754 67789999999998753
|
|
| >PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.39 Score=56.35 Aligned_cols=80 Identities=19% Similarity=0.158 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCc
Q psy2902 219 QRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLG 298 (945)
Q Consensus 219 qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lG 298 (945)
....+.++-+.+|+++-.+-.|-+|-..+.+........+..+|+|+|||++.+++++- +.+.. .....+|
T Consensus 93 ~~~fl~~i~~~tGl~ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~------~~~~~---~~Sl~lG 163 (496)
T PRK11031 93 ADEFLAKAQEILGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTG------AQATS---LFSLSMG 163 (496)
T ss_pred HHHHHHHHHHHHCCCeEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecC------Cceee---eeEEecc
Confidence 34556666777899975555555555554455443333456899999999999998752 22111 1124567
Q ss_pred hHHHHHHHH
Q psy2902 299 GEDFDQRII 307 (945)
Q Consensus 299 G~~iD~~l~ 307 (945)
.-.+.+.+.
T Consensus 164 ~vrl~e~f~ 172 (496)
T PRK11031 164 CVTWLERYF 172 (496)
T ss_pred chHHHHHhc
Confidence 777665543
|
|
| >COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.23 Score=51.63 Aligned_cols=48 Identities=27% Similarity=0.320 Sum_probs=44.6
Q ss_pred EEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCc
Q psy2902 789 VKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDL 838 (945)
Q Consensus 789 v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl 838 (945)
+.+|.|+..+..+++.+.+.... ...++.+..+..++|+.|..++.++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (237)
T COG2214 180 STIKAGALEGKALRLKGLLKSAR--GALGKARLKELSKRHPPFALEGDDK 227 (237)
T ss_pred ccCCcccccCceeeecccCCcCC--CCcccceeeeeccCCCCccccCCcc
Confidence 78999999999999999998766 6789999999999999999999998
|
|
| >COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.73 Score=53.28 Aligned_cols=94 Identities=19% Similarity=0.217 Sum_probs=57.8
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCC---CHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCce
Q psy2902 183 QISAEVLRKMKKTAEDYLGGEITEAVITVPAYF---NDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRN 259 (945)
Q Consensus 183 ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~---~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~ 259 (945)
+.+...+..|+..++...+..+.++.+ |-... -...-+.+..+.+..|+++-.+--|-+|--.+++..........
T Consensus 52 eai~R~~~aL~~f~e~~~~~~~~~v~~-vATsA~R~A~N~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~ 130 (492)
T COG0248 52 EAIERALSALKRFAELLDGFGAEEVRV-VATSALRDAPNGDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGD 130 (492)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEEE-ehhHHHHcCCCHHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCC
Confidence 344444555555554444455555322 11111 12224567778888899876666667776666665554344778
Q ss_pred EEEEEeCCcceEEEEEEE
Q psy2902 260 IVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 260 vlVvD~GggT~dvsv~~~ 277 (945)
.+|+|+|||+|.+++..-
T Consensus 131 ~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 131 GLVIDIGGGSTELVLGDN 148 (492)
T ss_pred EEEEEecCCeEEEEEecC
Confidence 999999999999999863
|
|
| >KOG2813|consensus | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.028 Score=58.28 Aligned_cols=36 Identities=42% Similarity=1.117 Sum_probs=31.8
Q ss_pred ccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 715 SWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 715 ~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
....|.-|+|+|.. .|++|.|+|.+ +|..|.|.|.+
T Consensus 233 t~~~C~~C~G~G~~------~C~tC~grG~k-----------~C~TC~gtgsl 268 (406)
T KOG2813|consen 233 THDLCYMCHGRGIK------ECHTCKGRGKK-----------PCTTCSGTGSL 268 (406)
T ss_pred ccchhhhccCCCcc------cCCcccCCCCc-----------ccccccCccce
Confidence 45789999999976 69999999987 89999999975
|
|
| >TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase) | Back alignment and domain information |
|---|
Probab=93.88 E-value=5.1 Score=44.15 Aligned_cols=46 Identities=33% Similarity=0.405 Sum_probs=31.6
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
+..|++ +.+.++..|+|++-.........++++++.+|.|- -.+++
T Consensus 95 ~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 95 ARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 345776 67999999999876443322345778888999875 55554
|
This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution. |
| >TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.63 Score=49.61 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=38.0
Q ss_pred CCCcEEEecC-ccccHHHHHHHHHHh---CCCCCCCCCCCchhhhhHHH
Q psy2902 403 DINDIILVGG-MTRMPKVQEKVKEFF---GKDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 403 ~i~~ViLvGG-~s~~p~v~~~l~~~f---g~~~~~~~~p~~avA~GAa~ 447 (945)
.+..|+++|| .+..|.+++.+...+ +.+...+.+....+|+||++
T Consensus 230 ~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 230 NIDRIVFIGSFLRNNQLLMKVLSYATNFWSKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred CCCeEEEECCcccCCHHHHHHHHHHHhhcCceEEEECCcchHHHhhhcc
Confidence 4689999999 678999999998877 45556788899999999986
|
This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA). |
| >COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.76 Score=48.57 Aligned_cols=71 Identities=21% Similarity=0.170 Sum_probs=39.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCcccee---cchhHHHHHHhccCCC-CCCCceEEEEEeCCcceEEEEEEE
Q psy2902 207 AVITVPAYFNDAQRQATKDAGRIAGLEVKRI---INEPTAAALAFGLDKS-GKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 207 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~l---i~Ep~AAAl~~~~~~~-~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
++||=-..-...+|..+......||==++.- -.|+.-|.-..+...- ......|+=+|+||||+..+++.-
T Consensus 90 vIITGEtArk~NA~~vl~alSg~aGDFVVAtAGPdLESiIAGkGaGA~t~Seqr~t~v~NlDIGGGTtN~slFD~ 164 (473)
T COG4819 90 VIITGETARKRNARPVLMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSEQRLTRVLNLDIGGGTTNYSLFDA 164 (473)
T ss_pred EEEeccccccccchHHHHHhhhcccceEEEecCCCHHHHhccCCccccchhhhhceEEEEEeccCCccceeeecc
Confidence 4566444445555666655555555222111 1233333332322221 234567888999999999999875
|
|
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=93.42 E-value=0.76 Score=51.82 Aligned_cols=125 Identities=10% Similarity=0.051 Sum_probs=75.3
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHHhCCC---C-CcEEEEcCCCCCHHHHHHHHHH-HHHcCCccceecchhHHHHHHhcc
Q psy2902 176 GKKLAPPQISAEVLRKMKKTAEDYLGGE---I-TEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAFGL 250 (945)
Q Consensus 176 ~~~~~~~ev~a~~L~~l~~~a~~~~~~~---~-~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~v~li~Ep~AAAl~~~~ 250 (945)
+..++-.++...+|.|+..+. +.. + ..+++|-+..-...+|+.|.+. .+.-|++.|.+--+..=+.++
T Consensus 88 ~nVvtNwel~E~ilDY~F~~L----G~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~h--- 160 (645)
T KOG0681|consen 88 RNVVTNWELMEQILDYIFGKL----GVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYH--- 160 (645)
T ss_pred CCccccHHHHHHHHHHHHHhc----CCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhh---
Confidence 444566677777777666654 433 2 3467887765556778888665 466788877665444433332
Q ss_pred CCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHH
Q psy2902 251 DKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEF 314 (945)
Q Consensus 251 ~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~ 314 (945)
.........-||+++|..+|.|-.+-- +.. ++....-.++||.....-|.+++.-++
T Consensus 161 N~~~~~~~~~liis~g~~~T~vipvld------G~~-il~~~kRiN~GG~qa~dYL~~Lmq~Ky 217 (645)
T KOG0681|consen 161 NYGKSSNKSGLIISMGHSATHVIPVLD------GRL-ILKDVKRINWGGYQAGDYLSRLMQLKY 217 (645)
T ss_pred ccCcccCcceEEEecCCCcceeEEEec------Cch-hhhcceeeccCcchHHHHHHHHHhccC
Confidence 221122346899999999998877643 221 112223356799888766666665543
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.18 Score=46.68 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=26.7
Q ss_pred EEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCc--hHHHH--HHHHHHHHH
Q psy2902 260 IVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLG--GEDFD--QRIIDYILD 312 (945)
Q Consensus 260 vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lG--G~~iD--~~l~~~l~~ 312 (945)
|+++|+|++++.+++++.. ....+.++..+....-| +..++ +.+.+-+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~---~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~ 54 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG---SDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKI 54 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT---EEEEEEEES----------HHHHH--HHHHHHHT-
T ss_pred CEEEEcCCCcEEEEEEEeC---CCCcEEEEEEecccccccCCCEEEEHHHHHHHHHH
Confidence 5789999999999999862 22345554333111111 56666 555544433
|
|
| >KOG0716|consensus | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.052 Score=55.70 Aligned_cols=60 Identities=37% Similarity=0.551 Sum_probs=46.2
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 577 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
-+.++|++..+.+....+.|+.- +. .+...+|+++++||.+|+|+.+|.+||.+|+.|+.
T Consensus 43 at~d~IKKaYR~L~~k~HPD~~g----------d~-P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 43 ATKDEIKKAYRKLALKYHPDKNG----------DN-PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred cchHHHHHHHHHHHHHhCCCcCC----------CC-chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 45677777777777766666521 21 34667999999999999999999999999988764
|
|
| >COG3426 Butyrate kinase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=92.97 E-value=1 Score=46.76 Aligned_cols=47 Identities=19% Similarity=0.208 Sum_probs=35.1
Q ss_pred CCCCCcEEEecCccccHHHHHHHHHHhC----CCCCCCCCCCchhhhhHHH
Q psy2902 401 VSDINDIILVGGMTRMPKVQEKVKEFFG----KDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 401 ~~~i~~ViLvGG~s~~p~v~~~l~~~fg----~~~~~~~~p~~avA~GAa~ 447 (945)
...+|.|+|+||.++...+-++|.++.. .-+.-..+-.+|.|.||..
T Consensus 294 ~G~vDaIvLTGGiA~~~~f~~~I~~~v~~iapv~v~PGE~EleALA~G~lR 344 (358)
T COG3426 294 KGKVDAIVLTGGIAYEKLFVDAIEDRVSWIAPVIVYPGEDELEALAEGALR 344 (358)
T ss_pred CCCCCEEEEecchhhHHHHHHHHHHHHhhhcceEecCCchHHHHHHhhhHH
Confidence 4578999999999999999999988763 2223334555688888853
|
|
| >PRK09557 fructokinase; Reviewed | Back alignment and domain information |
|---|
Probab=92.83 E-value=17 Score=39.63 Aligned_cols=44 Identities=16% Similarity=0.297 Sum_probs=29.1
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.|++ +.+.++..|+|++-.........++++.+.+|.| +-..++
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG-iG~giv 139 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG-CGAGVA 139 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc-eEEEEE
Confidence 4775 6789999999998654332234567778888865 333443
|
|
| >KOG0713|consensus | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.063 Score=57.06 Aligned_cols=225 Identities=17% Similarity=0.167 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc-ccccccccccccccccc
Q psy2902 594 EEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA-SAEASNFADAFGDIFGD 672 (945)
Q Consensus 594 ~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~-~~~~~~f~d~f~~~F~~ 672 (945)
-.|..+-+.+...|.+.+++.+..++.. ||..+++ .+...+ +.+.+|.++ ..+. ..|++|+..
T Consensus 50 pddp~A~e~F~~in~AYEVLsDpekRk~----YD~~GEe-------gL~~~~-~~~~~g~~~~~~f~----~~f~dfg~~ 113 (336)
T KOG0713|consen 50 PDDPNANEKFKEINAAYEVLSDPEKRKH----YDTYGEE-------GLKDEN-KDGEGGGGGNDIFS----AFFGDFGVT 113 (336)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCHHHHHH----HHhhhHh-------hhcccc-cccccCCcccchHH----Hhhcccccc
Confidence 3444455556666666666666666544 7776632 222222 111122221 2222 223333222
Q ss_pred cCCCCCCCCCCCCCCCCccceeeccccccccc------cceeeEeeccccccC-----CCCCccccccCcCcccCCCCCC
Q psy2902 673 IFGSNRDRDNNNKGSNGKDLRYNLEITLEQAA------YGFNTSIRVPSWDIC-----KSCYGNGAKKGTSPISCFTCSG 741 (945)
Q Consensus 673 ~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~------~g~~~~~~~~~~~~C-----~~C~G~G~~~~~~~~~C~~C~G 741 (945)
+.|........++.+...++..+++..+...+ .+..+.....+...| ..=.|.|.....+...|..|.+
T Consensus 114 ~~g~~~~e~~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~~g~~~~~~~~~~~~~~~~~g~~~~~q~~~~~~~~~ 193 (336)
T KOG0713|consen 114 VGGNPLEEALPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPAPGTRKCNCRLEMFTQQEGPGRFQMLQEAVCDECPN 193 (336)
T ss_pred cCCCcccCCCCCCceEEeehhhchhhhhcccHHHHHhccCceeecCcccccCChhhheeeccCCChhhhhhhhhhccCCc
Confidence 22222222345566666666666666665443 344444444433333 2223556666667889999999
Q ss_pred CceE--------eEeece-eeeeecCCCCCCce------------EEeecCCcccCCCceEee---------------ee
Q psy2902 742 QGQV--------RMQQGF-FSIQQTCPKCQGAG------------KVIPHPCLDCNGIGRIKR---------------NK 785 (945)
Q Consensus 742 ~G~~--------~~~~~~-~~~~~~C~~C~G~g------------~~~~~~c~~c~G~g~~~~---------------~~ 785 (945)
-+.. ....|. ......-..|.+.- +..+|+.+.+.+.+.... ..
T Consensus 194 ~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~gD~~f~~~~y~~~~~~~k~~~~~~n~~~sl~~~~v~~~~e~~ 273 (336)
T KOG0713|consen 194 VKLVLEEDPLEVEFERGDADGPEEIFELEGEPHIDGVPGDLFFKIVSYTHPRFERKGDDLYTNVTISLEAALVGFEMEIL 273 (336)
T ss_pred cceeecCCceeeeeeecccCCceeeeeccCCcceecccCCceeeeEEecccceecCccchhhHHHHHHHHHHHHHHHHhh
Confidence 6642 111111 11222222333332 246799999998655443 11
Q ss_pred e-----EEEEeecCCCCCeEEEEcCCCCCCCC-CCCCccEEEEEEEecCCccccc
Q psy2902 786 T-----LEVKIPAGIENNMRIRSTGNGEPGLN-GGSNGNLYIEIHIKPHKVFERD 834 (945)
Q Consensus 786 ~-----l~v~ip~G~~~g~~i~~~g~G~~~~~-~~~~Gdl~i~i~v~~~~~~~r~ 834 (945)
+ +.+.-..++.++..++..++|+|... ....|.+++++.+.+|..+.++
T Consensus 274 ~~d~~~~~~~r~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~ 328 (336)
T KOG0713|consen 274 HLDGHYVEVSRKKITWPGARTRKKGEGMPLLKNRNEKGNLYVTFDVEFPKSSLSD 328 (336)
T ss_pred ccchhhhhhhhhhccccchhhhhhhccchhhhccchhcceeEEecccCcccccch
Confidence 1 24555678899999999999999654 4568999999999988665444
|
|
| >KOG0715|consensus | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.13 Score=55.24 Aligned_cols=67 Identities=25% Similarity=0.537 Sum_probs=49.3
Q ss_pred eeeccccccccccceeeEeeccccccCCCCCccccccCc-----CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 693 RYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT-----SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 693 ~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
++++...-.+..|++...........|..|.|+|..... ...+|..|+|.|.+ ....|..|.|.|.+
T Consensus 158 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~c~~~~~~--------~~~~c~~~~g~~~v 229 (288)
T KOG0715|consen 158 RISFNVLSDCETCFGSGAEEGAKRESCKTCSGRGLVSNPKEDPFILYTCSYCLGRGLV--------LRDNCQACSGAGQV 229 (288)
T ss_pred ceEEEeecccccccCcCcccccccccchhhhCcccccccccCCcceeeccccccccee--------ccchHHHhhcchhh
Confidence 344444445666666667778888999999999933221 12279999999998 66669999999975
|
|
| >TIGR03706 exo_poly_only exopolyphosphatase | Back alignment and domain information |
|---|
Probab=92.22 E-value=2.3 Score=46.49 Aligned_cols=54 Identities=24% Similarity=0.439 Sum_probs=33.4
Q ss_pred HHHHHHHHHcCCccceecchhHHHHHHh-ccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 221 QATKDAGRIAGLEVKRIINEPTAAALAF-GLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 221 ~~l~~Aa~~AGl~~v~li~Ep~AAAl~~-~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
..+...-..+|++. .+++..+=|.+.| +....... ...+++|+|||++.++.+.
T Consensus 89 ~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~-~~~~v~DiGGGSte~~~~~ 143 (300)
T TIGR03706 89 EFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPI-ADGLVVDIGGGSTELILGK 143 (300)
T ss_pred HHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCC-CCcEEEEecCCeEEEEEec
Confidence 34444445679876 4555555555544 33322222 2249999999999999875
|
It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response. |
| >PRK14878 UGMP family protein; Provisional | Back alignment and domain information |
|---|
Probab=91.87 E-value=21 Score=39.36 Aligned_cols=91 Identities=14% Similarity=0.124 Sum_probs=48.6
Q ss_pred CCCcEEEEc-CCCCCHHHH--HHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 203 EITEAVITV-PAYFNDAQR--QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 203 ~~~~~VitV-Pa~~~~~qr--~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
+++.+.+|. |..|+-... ..-+..|...+++ +..++.-.|-|++.......... -+|++| ||++.+..++
T Consensus 65 did~Iavt~gPG~~~~lrvg~~~Ak~la~~~~~p-~~~v~h~~~Ha~sa~~~s~~~~~-l~l~vs--Gg~t~i~~~~--- 137 (323)
T PRK14878 65 DIDAVAVSQGPGLGPALRVGATAARALALKYNKP-LVPVNHCIAHIEIGRLTTGAKDP-VVLYVS--GGNTQVLAFR--- 137 (323)
T ss_pred HCCEEEEecCCCcccchHHHHHHHHHHHHHhCCC-ccccchHHHHHHhhhhcCCCCCC-EEEEEE--cCCeEEEEEe---
Confidence 467778887 777763221 2223334445655 34556666655543333332223 566666 4567665554
Q ss_pred ecCCceEEEEEecCCCCCchHHHHH
Q psy2902 280 VDGEKQFEVLSTNGDTFLGGEDFDQ 304 (945)
Q Consensus 280 ~~~~~~~~vl~~~~~~~lGG~~iD~ 304 (945)
.+.++++...- ..--|+.||.
T Consensus 138 ---~~~~~~~~~t~-d~s~Gr~fD~ 158 (323)
T PRK14878 138 ---GGRYRVFGETL-DIAIGNALDT 158 (323)
T ss_pred ---CCeEEEeeeec-CcchhHHHHH
Confidence 23577776633 3335677764
|
|
| >PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.082 Score=55.96 Aligned_cols=21 Identities=29% Similarity=0.495 Sum_probs=18.0
Q ss_pred ceEEEEcCccceEEEEEeCCc
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQ 92 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~ 92 (945)
++||||+|||++++++++.++
T Consensus 1 y~lgiDiGTts~K~~l~d~~g 21 (245)
T PF00370_consen 1 YYLGIDIGTTSVKAVLFDEDG 21 (245)
T ss_dssp EEEEEEECSSEEEEEEEETTS
T ss_pred CEEEEEEcccceEEEEEeCCC
Confidence 479999999999999998543
|
These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X .... |
| >PF13941 MutL: MutL protein | Back alignment and domain information |
|---|
Probab=91.36 E-value=1 Score=51.36 Aligned_cols=40 Identities=30% Similarity=0.379 Sum_probs=28.1
Q ss_pred eecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 236 RIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 236 ~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
.+++-|.|+..+...-.. .....+|+||+||-|||+--+.
T Consensus 227 ~i~PTP~AVl~~~~lla~-~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 227 PIMPTPAAVLRAAELLAE-GGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred cccCCHHHHHHHHHHHHh-cccCCEEEEEccCcccchhhhc
Confidence 367777776555433221 1567799999999999998765
|
|
| >PTZ00107 hexokinase; Provisional | Back alignment and domain information |
|---|
Probab=90.74 E-value=26 Score=40.49 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=42.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCc--cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 212 PAYFNDAQRQATKDAGRIAGLE--VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 212 Pa~~~~~qr~~l~~Aa~~AGl~--~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
|..-...-.+.|.+|...-|++ ++.++++.+|..++.........+...+-+=+|.||=-+.+.
T Consensus 189 ~~v~G~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 189 DPVEGKDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred CCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeee
Confidence 4455566788889998888874 577999999988877665421123344444478775444433
|
|
| >COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.67 E-value=1.7 Score=44.45 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHhCCCCCcEEEEcCCCCCHH-HHHHHHHHHHHcCCccceecchhHHHHHHhccCC--CCCCCceEEEEE
Q psy2902 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDA-QRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK--SGKSDRNIVVYD 264 (945)
Q Consensus 188 ~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~-qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~--~~~~~~~vlVvD 264 (945)
-..++.+..+..++.++ .++++-..|... .....++. |||.+...-+ .....+..++||
T Consensus 75 GVe~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~v----------------AAaNW~Ata~~~~e~~~dsci~VD 136 (330)
T COG1548 75 GVEDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREV----------------AAANWVATARFLAEEIKDSCILVD 136 (330)
T ss_pred HHHHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHH----------------HHhhhHHHHHHHHHhcCCceEEEe
Confidence 45567777776665544 778888777653 22212222 2221111000 012346688899
Q ss_pred eCCcceEEEEEEE
Q psy2902 265 LGGGTFDVSIIEI 277 (945)
Q Consensus 265 ~GggT~dvsv~~~ 277 (945)
+|..|+|+.-+.-
T Consensus 137 ~GSTTtDIIPi~~ 149 (330)
T COG1548 137 MGSTTTDIIPIKD 149 (330)
T ss_pred cCCcccceEeecc
Confidence 9999999987653
|
|
| >COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.26 E-value=34 Score=36.63 Aligned_cols=66 Identities=12% Similarity=0.135 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCcccc-HHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 381 ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRM-PKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 381 ~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~-p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
.++++....+...++...+ ......+.|.||.... +++.....+..-.+ |..-+..||.+.|....
T Consensus 227 ~Il~~aa~~i~~~~~~l~~-~~g~~~l~l~GG~~~~~~~~~~~~~~~l~~~------~~~D~~~GA~~~A~~~~ 293 (301)
T COG2971 227 RILKEAAAYIATLLEALSI-FNGSEKLSLLGGLAPSYPYYLSLFRRALLVP------PIGDALSGAVLLALGRF 293 (301)
T ss_pred HHHHHHHHHHHHHHHHHhc-ccCCceEEEeccccccchhhHHHHHHHhcCC------ccccHHHHHHHHHHHhh
Confidence 4555555556555554421 1234679999999887 88888888776333 35577889998886443
|
|
| >PRK05082 N-acetylmannosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=89.21 E-value=36 Score=36.82 Aligned_cols=41 Identities=24% Similarity=0.185 Sum_probs=27.6
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFD 271 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~d 271 (945)
..+++ +.+.++..|+|++-.... ....++++++-+|.|---
T Consensus 95 ~~~~p-v~v~NDa~a~a~aE~~~g-~~~~~~~~~l~ig~GiG~ 135 (291)
T PRK05082 95 LTDLP-TIALNDAQAAAWAEYQAL-PDDIRNMVFITVSTGVGG 135 (291)
T ss_pred HhCCC-EEEECcHHHHHHHHHHhc-CCCCCCEEEEEECCCcce
Confidence 34776 679999999998754322 234467888888866433
|
|
| >PRK09604 UGMP family protein; Validated | Back alignment and domain information |
|---|
Probab=89.15 E-value=41 Score=37.30 Aligned_cols=52 Identities=19% Similarity=0.314 Sum_probs=37.6
Q ss_pred CCCcEEEecCccccHHHHHHHHHHh---CCCCCCCC---CCCchhhhhHHHhhhhccC
Q psy2902 403 DINDIILVGGMTRMPKVQEKVKEFF---GKDPRRDI---NPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~v~~~l~~~f---g~~~~~~~---~p~~avA~GAa~~a~~~~~ 454 (945)
.++.|+|+||.+...++++.|.+.+ +.++..+. -.|.++++|+|=+-....|
T Consensus 254 ~~~~lvlsGGVa~N~~L~~~l~~~~~~~g~~v~~~~~~p~~D~gisIg~ag~~~~~~g 311 (332)
T PRK09604 254 GVKTLVVAGGVAANSGLRERLAELAKKRGIEVFIPPLKLCTDNAAMIAAAGYERLKAG 311 (332)
T ss_pred CCCeEEEcChHHHHHHHHHHHHHHHHHCCCEEECCCCCCCcHHHHHHHHHHHHHHHcC
Confidence 4678999999999999999999988 55444332 2467888888744433333
|
|
| >KOG1385|consensus | Back alignment and domain information |
|---|
Probab=88.99 E-value=0.9 Score=49.86 Aligned_cols=78 Identities=21% Similarity=0.371 Sum_probs=46.7
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHH--HHHhccCCC
Q psy2902 176 GKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA--ALAFGLDKS 253 (945)
Q Consensus 176 ~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AA--Al~~~~~~~ 253 (945)
|-.+.+.+-+..+|..++++.+......+..-.++| +...+|..-| .+.|....-
T Consensus 151 GLRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsI-----------------------m~GtdEGv~aWiTiN~Llg~L 207 (453)
T KOG1385|consen 151 GLRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSI-----------------------MDGTDEGVYAWITINYLLGTL 207 (453)
T ss_pred ccccCChhHHHHHHHHHHHHHhccCCccccCCceee-----------------------ccCcccceeeeeehhhhhccc
Confidence 567788999999999999988744433322222222 1122232221 122322221
Q ss_pred C-CCCceEEEEEeCCcceEEEEEE
Q psy2902 254 G-KSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 254 ~-~~~~~vlVvD~GggT~dvsv~~ 276 (945)
. ....++.|+|+|||+|.++..-
T Consensus 208 ~~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 208 GAPGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCCCCCceEEEEcCCceEEEEEec
Confidence 1 2257899999999999999764
|
|
| >TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein | Back alignment and domain information |
|---|
Probab=88.61 E-value=3.4 Score=44.97 Aligned_cols=20 Identities=25% Similarity=0.240 Sum_probs=17.6
Q ss_pred ceEEEEEeCCcceEEEEEEE
Q psy2902 258 RNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 258 ~~vlVvD~GggT~dvsv~~~ 277 (945)
.+++++||||.|+|++++.-
T Consensus 128 ~~~I~~DmGGTTtDi~~i~~ 147 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPIID 147 (318)
T ss_pred CCEEEEEcCccceeeEEecC
Confidence 45999999999999999863
|
This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages. |
| >PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated | Back alignment and domain information |
|---|
Probab=88.32 E-value=52 Score=39.20 Aligned_cols=50 Identities=20% Similarity=0.217 Sum_probs=36.6
Q ss_pred CCcEEEecCccccHHHHHHHHHHh---CCCCCCCC---CCCchhhhhHHHhhhhcc
Q psy2902 404 INDIILVGGMTRMPKVQEKVKEFF---GKDPRRDI---NPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 404 i~~ViLvGG~s~~p~v~~~l~~~f---g~~~~~~~---~p~~avA~GAa~~a~~~~ 453 (945)
++.|+|+||-+...++++.|.+.+ +.++..+. -.|.+++.|+|.+....+
T Consensus 246 ~~~lvlsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~~~~D~g~~ia~a~~~~~~~ 301 (535)
T PRK09605 246 KDEVLLVGGVAANNRLREMLKEMCEERGADFYVPEPRFCGDNGAMIAWLGLLMYKA 301 (535)
T ss_pred CCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCccccchHHHHHHHHHHHHHc
Confidence 568999999999999999999665 44444332 346788888886554333
|
|
| >KOG0719|consensus | Back alignment and domain information |
|---|
Probab=88.09 E-value=0.26 Score=49.41 Aligned_cols=61 Identities=33% Similarity=0.523 Sum_probs=49.0
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcccc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g 645 (945)
.-++.+|.+...++....++|+..+ ++...+..+|.....+|.+|+|+++|++||.-|...
T Consensus 25 ~a~~~eIrkAY~klal~~HPDk~~e---------ed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 25 DATDKEIRKAYHKLALRLHPDKNHE---------EDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred cCCHHHHHHHHHHHHHHhCCCcchh---------hhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 4679999999999999999998642 333345567888889999999999999999876553
|
|
| >COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.08 E-value=45 Score=36.53 Aligned_cols=40 Identities=33% Similarity=0.354 Sum_probs=28.2
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcc
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGT 269 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT 269 (945)
..|++ +.+-++..|||++-.........++++.+-+|.|-
T Consensus 105 ~~~~P-v~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGI 144 (314)
T COG1940 105 RLGLP-VFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI 144 (314)
T ss_pred HHCCC-EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccce
Confidence 34555 57899999999987665443445678888888763
|
|
| >PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=54 Score=36.30 Aligned_cols=92 Identities=17% Similarity=0.144 Sum_probs=53.9
Q ss_pred CCCcEEEEc-CCCCCHHHH--HHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 203 EITEAVITV-PAYFNDAQR--QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 203 ~~~~~VitV-Pa~~~~~qr--~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
+++.+.+|. |..|+--.. ..-+-.|...+++. .-++.-+|-+++..+......+ |++=+-||+|.+.. .
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~Pl-igV~HlegHi~a~~l~~~~~~P---l~LlVSGGhT~l~~--~-- 141 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPL-VGVNHCVAHIEMGRLVTGAENP---VVLYVSGGNTQVIA--Y-- 141 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCE-eecchHHHHHHHHhhccCCCCC---eEEEEeCCceEEEE--e--
Confidence 356677777 776654332 22244445556553 4567777766655443322223 45557788888775 2
Q ss_pred ecCCceEEEEEecCCCCCchHHHHHH
Q psy2902 280 VDGEKQFEVLSTNGDTFLGGEDFDQR 305 (945)
Q Consensus 280 ~~~~~~~~vl~~~~~~~lGG~~iD~~ 305 (945)
....+++++..-|.. -|+.||+.
T Consensus 142 --~~~~~~ilG~T~Dda-~Gea~DKv 164 (345)
T PTZ00340 142 --SEHRYRIFGETIDIA-VGNCLDRF 164 (345)
T ss_pred --cCCeEEEEEeecccc-hhHHHHHH
Confidence 335689988887665 56777754
|
|
| >COG2192 Predicted carbamoyl transferase, NodU family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.68 E-value=70 Score=37.21 Aligned_cols=83 Identities=16% Similarity=0.111 Sum_probs=59.2
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHH-HHHHHHhCCCCCCCC-CCCchhhhhH
Q psy2902 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQ-EKVKEFFGKDPRRDI-NPDEAVAVGA 445 (945)
Q Consensus 368 ~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~-~~l~~~fg~~~~~~~-~p~~avA~GA 445 (945)
....-.++...++..+++++..+..-+.+... .+.+.+.||.+..-.+. +.+.+-+..++.+.+ -.|...|.||
T Consensus 254 ~~~~~~diAasaQ~~lE~l~l~~~~~~~~~~g----~~~L~~AGGVAlNv~~N~~~l~~~~f~dlfV~Pa~gD~G~AvGA 329 (555)
T COG2192 254 STERAADIAASAQAYLEELVLEMLRYLREETG----EDNLALAGGVALNVKANGKLLRRGLFEDLFVQPAMGDAGLAVGA 329 (555)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHhC----ccceEEccceeeeeeehHhHhhcccCceeEecCCCCCcchHHHH
Confidence 44455667777777777777666665554322 47899999999888887 777777776775443 4577899999
Q ss_pred HHhhhhccC
Q psy2902 446 AIQGSVLSG 454 (945)
Q Consensus 446 a~~a~~~~~ 454 (945)
|+++....+
T Consensus 330 Al~~~~~~~ 338 (555)
T COG2192 330 ALAVKRELG 338 (555)
T ss_pred HHHHHHHhc
Confidence 999976544
|
|
| >PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T | Back alignment and domain information |
|---|
Probab=86.55 E-value=0.17 Score=46.89 Aligned_cols=58 Identities=19% Similarity=0.285 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcC---Cccce---------ecchh-HHHHHH
Q psy2902 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAG---LEVKR---------IINEP-TAAALA 247 (945)
Q Consensus 186 a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AG---l~~v~---------li~Ep-~AAAl~ 247 (945)
+..|+...+.|+...+.++..+.+++ .....+.+.++++.++ +.... ++.+| .|+|++
T Consensus 49 ~~~i~~a~~~AE~~~k~~i~~v~v~~----g~s~l~~i~~~~~~~~~~~v~v~~~~~~~~~~~~~~~p~~Asa~g 119 (120)
T PF14450_consen 49 SKAIKIAIEEAERLAKCEIGSVYVSI----GGSKLQNIEELIEKCGGMPVRVAGPNIVEGLPEIVLNPEYASAIG 119 (120)
T ss_dssp HHHHT--HHHHHHH-HHHH--S--TT----GGGGSTTHHHHHHHHHTS-EEE--GGGSET-HHHHT-GGGHHHHH
T ss_pred HHHHHHHHHHHHHHhCCeeeEEEecC----chhHHHhHHHHHHHhCCCcEEEccccccCcchhhccCceeeEEEe
Confidence 34455555556655444555555554 4445566667777766 65555 78888 888775
|
|
| >smart00842 FtsA Cell division protein FtsA | Back alignment and domain information |
|---|
Probab=86.20 E-value=5.4 Score=40.14 Aligned_cols=30 Identities=40% Similarity=0.396 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHcCCccceecchhHHHHHH
Q psy2902 218 AQRQATKDAGRIAGLEVKRIINEPTAAALA 247 (945)
Q Consensus 218 ~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~ 247 (945)
...+.+.++++.|||++..++.+|.|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 457888999999999999999999998764
|
FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931. |
| >TIGR03281 methan_mark_12 putative methanogenesis marker protein 12 | Back alignment and domain information |
|---|
Probab=86.16 E-value=3 Score=44.20 Aligned_cols=57 Identities=19% Similarity=0.371 Sum_probs=45.5
Q ss_pred CCcEEEecC--ccccH-HHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEE
Q psy2902 404 INDIILVGG--MTRMP-KVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLL 462 (945)
Q Consensus 404 i~~ViLvGG--~s~~p-~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~ 462 (945)
...|+|+|- +++.| .+++.|++.|..++.. +. ....|.|+|+.|.-+.+..++++-.
T Consensus 263 ~~~IvLSGs~g~~r~~~~v~~~I~~~L~~~V~~-L~-~ksAA~G~AiIA~dI~gGk~~iLGi 322 (326)
T TIGR03281 263 EAGVVLAGSGGTLREPINFSGKIKRVLSCKVLV-LD-SESAAIGLALIAEDIFSGKREILGI 322 (326)
T ss_pred CCcEEEeCcchhccCchHHHHHHHHHhCCCeEE-ec-chhhhhhHHHHHHHHhCCcceEeee
Confidence 358999997 99999 9999999999866653 22 2789999999998888766666533
|
Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. |
| >KOG0681|consensus | Back alignment and domain information |
|---|
Probab=86.09 E-value=0.61 Score=52.58 Aligned_cols=48 Identities=23% Similarity=0.471 Sum_probs=41.0
Q ss_pred CCcEEEecCccccHHHHHHHHHHh------CC--CCCCCCCCCchhhhhHHHhhhh
Q psy2902 404 INDIILVGGMTRMPKVQEKVKEFF------GK--DPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 404 i~~ViLvGG~s~~p~v~~~l~~~f------g~--~~~~~~~p~~avA~GAa~~a~~ 451 (945)
++.|+|+||.|.+|.+.+.|...+ |. .+....||...+=+||+.+|+.
T Consensus 559 V~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~i~V~rasdP~LDAW~GA~~~a~n 614 (645)
T KOG0681|consen 559 VSNVLLTGGCSQLPGMKERIKKELTSMRPVGSSINVVRASDPVLDAWRGASAWAAN 614 (645)
T ss_pred hhheEeecccccCcCHHHHHHHHhheecccCCceEEEecCCcchhhhhhhHHhhcC
Confidence 789999999999999999998776 32 3456789999999999999974
|
|
| >PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length | Back alignment and domain information |
|---|
Probab=85.90 E-value=6.2 Score=43.02 Aligned_cols=52 Identities=31% Similarity=0.542 Sum_probs=37.7
Q ss_pred CCCCcEEEecCccccHHHHHHHHHHhCC----CCCCCCCC----CchhhhhHHHhhhhccC
Q psy2902 402 SDINDIILVGGMTRMPKVQEKVKEFFGK----DPRRDINP----DEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 402 ~~i~~ViLvGG~s~~p~v~~~l~~~fg~----~~~~~~~p----~~avA~GAa~~a~~~~~ 454 (945)
.+.+.|+|+|-.+++|-+.+.+++.|+. ++. ...+ ...+|.|||+.|.-+.|
T Consensus 259 ~~~~~IilSGr~~~~~~~~~~l~~~l~~~~~~~v~-~l~~~~~~aKeaA~GaAiIA~glaG 318 (343)
T PF07318_consen 259 PDPDEIILSGRFSRIPEFRKKLEDRLEDYFPVKVR-KLEGLARKAKEAAQGAAIIANGLAG 318 (343)
T ss_pred CCCCEEEEeccccccHHHHHHHHHHHHhhccccee-ecccccccchhhhhhHHHHhhhhhc
Confidence 3568899999999999988888777732 332 2222 23589999999977766
|
The function of this family is unknown. |
| >TIGR03723 bact_gcp putative glycoprotease GCP | Back alignment and domain information |
|---|
Probab=85.73 E-value=60 Score=35.61 Aligned_cols=44 Identities=20% Similarity=0.408 Sum_probs=32.9
Q ss_pred CCCcEEEecCccccHHHHHHHHHHh---CCCCCCCC---CCCchhhhhHH
Q psy2902 403 DINDIILVGGMTRMPKVQEKVKEFF---GKDPRRDI---NPDEAVAVGAA 446 (945)
Q Consensus 403 ~i~~ViLvGG~s~~p~v~~~l~~~f---g~~~~~~~---~p~~avA~GAa 446 (945)
.++.|+|+||.+...++++.|.+.+ +.++..+. -.|.++++|+|
T Consensus 259 ~~~~v~lsGGVa~N~~l~~~l~~~~~~~~~~v~~~~~~p~~D~Gi~Ig~a 308 (314)
T TIGR03723 259 GLKTLVVAGGVAANSRLRERLEELAEKAGLEVFIPPLELCTDNAAMIAAA 308 (314)
T ss_pred CCCeEEEeccHHHHHHHHHHHHHHHHHCCCEEECCCCCCCChHHHHHHHH
Confidence 3578999999999999999999987 54443322 23567777765
|
This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas |
| >PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 | Back alignment and domain information |
|---|
Probab=85.67 E-value=3.3 Score=44.81 Aligned_cols=77 Identities=23% Similarity=0.305 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchH
Q psy2902 221 QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300 (945)
Q Consensus 221 ~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~ 300 (945)
..+.+.-+..|+++-.+=.|-+|...+.+...........+|+|+|||++.+++++- ....... ...+|.-
T Consensus 75 ~~~~~i~~~tGi~i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~-----~~~~~~~----Sl~lG~v 145 (285)
T PF02541_consen 75 EFLDRIKKETGIDIEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFEN-----GKVVFSQ----SLPLGAV 145 (285)
T ss_dssp HHHHHHHHHHSS-EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEET-----TEEEEEE----EES--HH
T ss_pred HHHHHHHHHhCCceEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEEC-----CeeeEee----eeehHHH
Confidence 344555567798865444444444333333222234567899999999999999862 2222221 2346877
Q ss_pred HHHHHH
Q psy2902 301 DFDQRI 306 (945)
Q Consensus 301 ~iD~~l 306 (945)
.+.+.+
T Consensus 146 rl~e~~ 151 (285)
T PF02541_consen 146 RLTERF 151 (285)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766655
|
6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A. |
| >KOG0691|consensus | Back alignment and domain information |
|---|
Probab=85.61 E-value=0.71 Score=49.34 Aligned_cols=63 Identities=37% Similarity=0.521 Sum_probs=51.1
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCC
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDP 648 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~ 648 (945)
...|..||...........++|+ |+.+-- +..+|...++||++|+|+++|+.||.++..+..+
T Consensus 15 ~~at~~eIkKaYr~kaL~~HPDK---------Np~dP~--A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~ 77 (296)
T KOG0691|consen 15 EDATDAEIKKAYRKKALQYHPDK---------NPGDPQ--AAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA 77 (296)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCC---------CCCChH--HHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence 34678899888888877788884 544444 6789999999999999999999999999887553
|
|
| >TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family | Back alignment and domain information |
|---|
Probab=85.19 E-value=63 Score=35.32 Aligned_cols=95 Identities=20% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCcEEEEc-CCCCCHHHHH--HHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 203 EITEAVITV-PAYFNDAQRQ--ATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 203 ~~~~~VitV-Pa~~~~~qr~--~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
+++.+++|. |..|+-...- .-+..+...+++. ..++.-+|-|++...... ......+++=+-||++.+..++
T Consensus 69 did~iav~~GPG~~tglrvg~~~Ak~la~~~~~p~-~~v~hl~~ha~~a~~~s~-~~~~~~l~l~vsGG~t~l~~~~--- 143 (305)
T TIGR00329 69 EIDLIAYTQGPGLGGSLRVGATFARSLALSLDKPL-IGVNHLLGHIYAPRLDTN-ILQFPFVSLLVSGGHTQIIAVK--- 143 (305)
T ss_pred HCCEEEEecCCCchhhHHHHHHHHHHHHHHhCCCE-eecccHHHHHHHhhhhcC-CCCCCcEEEEEcCCceEEEEEe---
Confidence 366777887 8888753322 2233344446654 344555554443322211 0012234444445788777765
Q ss_pred ecCCceEEEEEecCCCCCchHHHHHH
Q psy2902 280 VDGEKQFEVLSTNGDTFLGGEDFDQR 305 (945)
Q Consensus 280 ~~~~~~~~vl~~~~~~~lGG~~iD~~ 305 (945)
....+++++..- ..--|+.||..
T Consensus 144 --~~~~~~~l~~t~-d~S~GrlfD~v 166 (305)
T TIGR00329 144 --GIGDYEVLGETL-DDAVGEAFDKV 166 (305)
T ss_pred --CCCcEEEeeeec-CchhhHHHHHH
Confidence 345788887744 33456666643
|
This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea. |
| >PRK09698 D-allose kinase; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=63 Score=35.15 Aligned_cols=44 Identities=9% Similarity=0.007 Sum_probs=28.5
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
..|++ +.+.++..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 103 ~~~~p-v~v~NDa~aaa~~E~~~~~-~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 103 TLNCP-VFFSRDVNLQLLWDVKENN-LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred HhCCC-EEEcchHhHHHHHHHHhcC-CCCceEEEEEecCc-eEEEEE
Confidence 35776 6799999999886533221 23457888888876 444444
|
|
| >KOG2824|consensus | Back alignment and domain information |
|---|
Probab=84.84 E-value=0.85 Score=47.26 Aligned_cols=45 Identities=27% Similarity=0.529 Sum_probs=25.9
Q ss_pred ccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 717 DICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
..|..|+|.+.. +|..|+|+=++...-.-...-.+|..|+-.|-+
T Consensus 230 ~~C~~CGg~rFl------pC~~C~GS~kv~~~~~~~~~~~rC~~CNENGLv 274 (281)
T KOG2824|consen 230 GVCESCGGARFL------PCSNCHGSCKVHEEEEDDGGVLRCLECNENGLV 274 (281)
T ss_pred CcCCCcCCcceE------ecCCCCCceeeeeeccCCCcEEECcccCCCCce
Confidence 567777777765 577777776663211111123457777766654
|
|
| >PHA03102 Small T antigen; Reviewed | Back alignment and domain information |
|---|
Probab=84.64 E-value=0.69 Score=44.36 Aligned_cols=55 Identities=13% Similarity=0.029 Sum_probs=44.0
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 578 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
|.++|.+..+++....++|+.- +..++.++++||++|+++.++..||.+++....
T Consensus 20 s~~eIKkAYr~la~~~HPDkgg---------------~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 20 NLPLMRKAYLRKCLEFHPDKGG---------------DEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred CHHHHHHHHHHHHHHHCcCCCc---------------hhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 7888888888888888888621 124677889999999999999999998876543
|
|
| >smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1 | Back alignment and domain information |
|---|
Probab=84.13 E-value=4 Score=39.65 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=18.8
Q ss_pred eeeeEEEEeecCCCCCeEEEEcC
Q psy2902 783 RNKTLEVKIPAGIENNMRIRSTG 805 (945)
Q Consensus 783 ~~~~l~v~ip~G~~~g~~i~~~g 805 (945)
..+.|.++||||...|..-+++|
T Consensus 78 ~IPEl~~ei~pg~~~g~itTVEG 100 (160)
T smart00709 78 SIPELDLEIPPGPLGGFITTVEG 100 (160)
T ss_pred EeeeeeEEecCCCCCcEEEehHH
Confidence 36778899999998888888865
|
Also present in archaeal proteins. |
| >PF02543 CmcH_NodU: Carbamoyltransferase; InterPro: IPR003696 The putative O-carbamoyltransferases (O-Cases) encoded by the nodU genes of Rhizobium fredii and Bradyrhizobium japonicum are involved in the synthesis of nodulation factors [] | Back alignment and domain information |
|---|
Probab=83.53 E-value=17 Score=40.73 Aligned_cols=82 Identities=23% Similarity=0.283 Sum_probs=58.0
Q ss_pred EEEcHHHHHHHHHHHHHHHH-HHHHHHHHHcCCCCCCCCc-EEEecCccccHHHHHHHHHHhCCC-CCC-CCCCCchhhh
Q psy2902 368 LKITRAKLELLVDELITRTI-EPCRIAIKDAGIKVSDIND-IILVGGMTRMPKVQEKVKEFFGKD-PRR-DINPDEAVAV 443 (945)
Q Consensus 368 ~~itr~~~e~~~~~~i~~i~-~~i~~~l~~~~~~~~~i~~-ViLvGG~s~~p~v~~~l~~~fg~~-~~~-~~~p~~avA~ 443 (945)
..-.+.++-..++..+++++ ..++.++++.+. +. |.|.||.+..-.+...|.+..+.+ +.+ +.-.|..+|+
T Consensus 131 ~~~~~~dlAa~~Q~~~E~~v~~~~~~~~~~~g~-----~~~L~laGGvaLN~~~N~~l~~~~~~~~v~V~Pa~gD~G~ai 205 (360)
T PF02543_consen 131 LTQRHADLAASAQKVLEEIVLHLVRHLLERTGI-----DNNLCLAGGVALNCKANGRLLEEPGFDNVFVPPAAGDAGLAI 205 (360)
T ss_dssp EESS-HHHHHHHHHHHHHHHHHHHHHHHHHHT-------SEEEEESGGGG-HHHHHHHHTSTT-SEEE--TTTSGGGHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEechHHHHHHHHHHHHhcCCCCeEEECCCCCCcchHH
Confidence 45677888888888887765 455666777663 46 999999999999999998885543 433 3445789999
Q ss_pred hHHHhhhhccC
Q psy2902 444 GAAIQGSVLSG 454 (945)
Q Consensus 444 GAa~~a~~~~~ 454 (945)
|||+++....+
T Consensus 206 GaA~~~~~~~~ 216 (360)
T PF02543_consen 206 GAALYAWHELG 216 (360)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHhc
Confidence 99999986554
|
The cmcH genes of Nocardia lactamdurans and Streptomyces clavuligerus encode a functional 3'-hydroxymethylcephem O-carbamoyltransferase 2.1.3.7 from EC for cephamycin biosynthesis that shows significant similarity to the O-carbamoyltransferases [].; GO: 0003824 catalytic activity, 0009058 biosynthetic process; PDB: 3VES_A 3VER_A 3VEN_A 3VF2_A 3VEX_A 3VEW_A 3VET_A 3VEO_A 3VEZ_A 3VF4_A. |
| >PLN02666 5-oxoprolinase | Back alignment and domain information |
|---|
Probab=83.43 E-value=7 Score=50.73 Aligned_cols=76 Identities=13% Similarity=0.148 Sum_probs=47.0
Q ss_pred EcHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCC-CCCCCCCCchhhhhHHH
Q psy2902 370 ITRAKLELLVDELITRT-IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD-PRRDINPDEAVAVGAAI 447 (945)
Q Consensus 370 itr~~~e~~~~~~i~~i-~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~-~~~~~~p~~avA~GAa~ 447 (945)
++-++...-+..+.+.. .+.|..+....+.++.+. .++..||++ |...-.|.+.+|.+ +..+.+|....|+|+++
T Consensus 454 ~~~e~aA~~i~~ia~~~m~~air~i~~~~G~dpr~~-~l~afGGag--p~ha~~lA~~lgi~~vivP~~~gv~sA~G~~~ 530 (1275)
T PLN02666 454 MSVEEVALGFVRVANEAMCRPIRQLTEMKGYETANH-ALACFGGAG--PQHACAIARALGMSEVFVHRYCGILSAYGMGL 530 (1275)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc-eEEEecCcH--HHHHHHHHHHcCCCEEEeCCCccHHHHHHHHh
Confidence 44455554444444333 344444444555544322 344445544 88889999999988 66778888899999976
Q ss_pred h
Q psy2902 448 Q 448 (945)
Q Consensus 448 ~ 448 (945)
.
T Consensus 531 a 531 (1275)
T PLN02666 531 A 531 (1275)
T ss_pred h
Confidence 3
|
|
| >COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.55 E-value=47 Score=36.33 Aligned_cols=216 Identities=19% Similarity=0.254 Sum_probs=104.8
Q ss_pred eeChhhHHHHHHHHHHHHHHHHh---CC---CCCcEEEEcCCCCCHH-HHHHH--HHHHHHcCCccceecchhHHHHHHh
Q psy2902 178 KLAPPQISAEVLRKMKKTAEDYL---GG---EITEAVITVPAYFNDA-QRQAT--KDAGRIAGLEVKRIINEPTAAALAF 248 (945)
Q Consensus 178 ~~~~~ev~a~~L~~l~~~a~~~~---~~---~~~~~VitVPa~~~~~-qr~~l--~~Aa~~AGl~~v~li~Ep~AAAl~~ 248 (945)
.+-|+..+..-.+.+-...++.+ +. +++-+.+|.=...... ..-++ +..|...+.+ +.-++...+-.++.
T Consensus 40 GVvPe~Asr~H~e~i~~li~~al~eA~~~~~dID~IA~T~gPGL~gaL~VG~~~Ak~LA~a~~kP-li~VnH~~gHi~a~ 118 (342)
T COG0533 40 GVVPELASRHHVENIPPLIEEALAEAGVSLEDIDAIAVTAGPGLGGALLVGATAAKALALALNKP-LIPVNHLEGHIEAA 118 (342)
T ss_pred CcCccHHHHHHHHHHHHHHHHHHHHcCCCcccCCEEEEecCCCchhHHHHHHHHHHHHHHHhCCC-EeecchHHHHHHHH
Confidence 35677777766665555444333 33 3555566652233222 21111 2222333433 33566666666555
Q ss_pred ccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHH
Q psy2902 249 GLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIA 328 (945)
Q Consensus 249 ~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~ 328 (945)
...... .-. .+..=+-||.|.+..++ ..+.+++++..-|.. -|+.||. +.+..++...-.+ .
T Consensus 119 ~l~~~~-~~p-~v~LlVSGGHTqli~~~-----~~g~y~ilGeTlDdA-~Gea~DK---------vAR~lGL~yPGGp-~ 180 (342)
T COG0533 119 RLETGL-AFP-PVALLVSGGHTQLIAVR-----GIGRYEVLGETLDDA-AGEAFDK---------VARLLGLGYPGGP-A 180 (342)
T ss_pred HhccCC-CCC-cEEEEEecCceEEEEEc-----CCCcEEEEeeechhh-hhHHHHH---------HHHHhCCCCCCcH-H
Confidence 444321 222 33333456666666554 447799988776554 3566653 2223333333332 1
Q ss_pred HHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEE------------------EEEcHHHHHHHHHH----HHHHH
Q psy2902 329 LQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN------------------LKITRAKLELLVDE----LITRT 386 (945)
Q Consensus 329 ~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~------------------~~itr~~~e~~~~~----~i~~i 386 (945)
+.+.|++-. .. .+.+|...... ...+++ -.+..++.++++.. .++-+
T Consensus 181 ---Ie~lA~~G~------~~-~~~fP~~~~~~-~~~DfSFSGLkTa~~~~~~~~~~~~~~~~~d~~dia~sfQ~av~~~L 249 (342)
T COG0533 181 ---IEKLAKKGD------PD-AFEFPRPMVKG-KNLDFSFSGLKTAVLRLLKKLKQKEELNEEDKEDIAASFQEAVFDML 249 (342)
T ss_pred ---HHHHHhcCC------CC-ceeCCccccCC-CCcceehHhHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHHHH
Confidence 111121110 00 12222211000 000111 11223333334433 44555
Q ss_pred HHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC
Q psy2902 387 IEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG 428 (945)
Q Consensus 387 ~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg 428 (945)
.+...++|+..+. +.++++||-+....+|++++++..
T Consensus 250 ~~kt~rAl~~~~~-----~~lvi~GGVaaN~~LR~~l~~~~~ 286 (342)
T COG0533 250 VEKTERALKHTGK-----KELVIAGGVAANSRLREMLEEMCK 286 (342)
T ss_pred HHHHHHHHHHhCC-----CEEEEeccHHHhHHHHHHHHHHHH
Confidence 5566677776654 689999999999999999998773
|
|
| >PRK13310 N-acetyl-D-glucosamine kinase; Provisional | Back alignment and domain information |
|---|
Probab=82.54 E-value=79 Score=34.41 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=30.4
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
+..|++ +.+.++..|||++-.........++++++.+|.|- -..++
T Consensus 94 ~~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi-G~giv 139 (303)
T PRK13310 94 ARLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV-GGGLV 139 (303)
T ss_pred HHHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCce-EEEEE
Confidence 345776 67999999999875443322345678888888763 34443
|
|
| >cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs | Back alignment and domain information |
|---|
Probab=81.85 E-value=1.4 Score=42.17 Aligned_cols=23 Identities=30% Similarity=0.814 Sum_probs=16.4
Q ss_pred ccCCCCCccccccCcCcccCCCCCCCceE
Q psy2902 717 DICKSCYGNGAKKGTSPISCFTCSGQGQV 745 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 745 (945)
..|..|+|.+.. +|+.|+|+=++
T Consensus 100 ~~C~~Cgg~rfv------~C~~C~Gs~k~ 122 (147)
T cd03031 100 GVCEGCGGARFV------PCSECNGSCKV 122 (147)
T ss_pred CCCCCCCCcCeE------ECCCCCCcceE
Confidence 457777777765 57788777766
|
This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive. |
| >COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription] | Back alignment and domain information |
|---|
Probab=81.60 E-value=74 Score=33.47 Aligned_cols=44 Identities=11% Similarity=0.271 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccc
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTR 415 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 415 (945)
++..+.+....+-.....|+..+++.......=..++++||.++
T Consensus 181 k~T~~aiqsG~v~g~~~~i~~~~~~~k~~~~~~~~~vltGg~~~ 224 (251)
T COG1521 181 KNTVEAIQSGVVYGYVGLIEGLLKEIKEELKGGDAVVLTGGLAK 224 (251)
T ss_pred cchHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCCchH
Confidence 45566666666666666666666654322212368999999874
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 945 | ||||
| 2kho_A | 605 | Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAP | 0.0 | ||
| 4b9q_A | 605 | Open Conformation Of Atp-Bound Hsp70 Homolog Dnak L | 0.0 | ||
| 2v7y_A | 509 | Crystal Structure Of The Molecular Chaperone Dnak F | 1e-170 | ||
| 1dkg_D | 383 | Crystal Structure Of The Nucleotide Exchange Factor | 1e-168 | ||
| 3c7n_B | 554 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-147 | ||
| 1yuw_A | 554 | Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214 | 1e-147 | ||
| 2v7z_A | 543 | Crystal Structure Of The 70-Kda Heat Shock Cognate | 1e-146 | ||
| 3iuc_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-105 | ||
| 3ldl_A | 384 | Crystal Structure Of Human Grp78 (70kda Heat Shock | 1e-105 | ||
| 3fe1_A | 403 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-101 | ||
| 3jxu_A | 409 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-101 | ||
| 2e8a_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-100 | ||
| 2e88_A | 391 | Crystal Structure Of The Human Hsp70 Atpase Domain | 1e-100 | ||
| 3a8y_A | 392 | Crystal Structure Of The Complex Between The Bag5 B | 1e-100 | ||
| 3gdq_A | 408 | Crystal Structure Of The Human 70kda Heat Shock Pro | 1e-100 | ||
| 3kvg_A | 400 | Crystal Structure Of The N-Terminal Domain Of Hsp70 | 1e-100 | ||
| 1hjo_A | 380 | Atpase Domain Of Human Heat Shock 70kda Protein 1 L | 1e-99 | ||
| 3qfu_A | 394 | Crystal Structure Of Yeast Hsp70 (BipKAR2) COMPLEXE | 1e-99 | ||
| 3d2f_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 1e-99 | ||
| 3qfp_A | 390 | Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE D | 2e-99 | ||
| 1s3x_A | 382 | The Crystal Structure Of The Human Hsp70 Atpase Dom | 2e-99 | ||
| 3d2e_B | 382 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 2e-98 | ||
| 1hpm_A | 386 | How Potassium Affects The Activity Of The Molecular | 3e-98 | ||
| 2qw9_B | 394 | Crystal Structure Of Bovine Hsc70 (1-394aa)in The A | 3e-98 | ||
| 1ngb_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 6e-98 | ||
| 1bup_A | 386 | T13s Mutant Of Bovine 70 Kilodalton Heat Shock Prot | 8e-98 | ||
| 1ngd_A | 386 | Structural Basis Of The 70-kilodalton Heat Shock Co | 9e-98 | ||
| 1ngf_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 9e-98 | ||
| 1ngh_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 9e-98 | ||
| 1nga_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 9e-98 | ||
| 1atr_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 1e-97 | ||
| 1ngg_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-97 | ||
| 1ngc_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-97 | ||
| 1nge_A | 386 | Structural Basis Of The 70-Kilodalton Heat Shock Co | 1e-97 | ||
| 1ba0_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 2e-97 | ||
| 1ats_A | 386 | Threonine 204 Of The Chaperone Protein Hsc70 Influe | 2e-97 | ||
| 2qwn_A | 394 | Crystal Structure Of Disulfide-Bond-Crosslinked Com | 3e-97 | ||
| 1qqm_A | 378 | D199s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 8e-97 | ||
| 3cqx_A | 386 | Chaperone Complex Length = 386 | 8e-97 | ||
| 1ba1_A | 386 | Heat-Shock Cognate 70kd Protein 44kd Atpase N-Termi | 9e-97 | ||
| 1hx1_A | 400 | Crystal Structure Of A Bag Domain In Complex With T | 1e-96 | ||
| 3fzf_A | 381 | Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP | 1e-96 | ||
| 1qqo_A | 378 | E175s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 2e-96 | ||
| 1qqn_A | 378 | D206s Mutant Of Bovine 70 Kilodalton Heat Shock Pro | 3e-96 | ||
| 1kay_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71a | 4e-96 | ||
| 1kaz_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71e | 4e-96 | ||
| 1kax_A | 381 | 70kd Heat Shock Cognate Protein Atpase Domain, K71m | 5e-96 | ||
| 3i33_A | 404 | Crystal Structure Of The Human 70kda Heat Shock Pro | 7e-96 | ||
| 2bup_A | 381 | T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 | 8e-96 | ||
| 4fsv_A | 387 | Crystal Structure Of A Heat Shock 70kda Protein 2 ( | 1e-94 | ||
| 3gl1_A | 387 | Crystal Structure Of Atpase Domain Of Ssb1 Chaperon | 1e-93 | ||
| 3dpo_A | 219 | Crystal Structure Of The Substrate Binding Domain O | 4e-58 | ||
| 1dkx_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 5e-58 | ||
| 1dky_A | 219 | The Substrate Binding Domain Of Dnak In Complex Wit | 1e-57 | ||
| 1bpr_A | 191 | Nmr Structure Of The Substrate Binding Domain Of Dn | 2e-57 | ||
| 3n8e_A | 182 | Substrate Binding Domain Of The Human Heat Shock 70 | 6e-48 | ||
| 3d2f_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70 L | 7e-47 | ||
| 3c7n_A | 668 | Structure Of The Hsp110:hsc70 Nucleotide Exchange C | 1e-46 | ||
| 3d2e_A | 675 | Crystal Structure Of A Complex Of Sse1p And Hsp70, | 1e-46 | ||
| 3dqg_A | 151 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 1e-46 | ||
| 2qxl_A | 658 | Crystal Structure Analysis Of Sse1, A Yeast Hsp110 | 5e-46 | ||
| 1ckr_A | 159 | High Resolution Solution Structure Of The Heat Shoc | 4e-43 | ||
| 3h0x_A | 152 | Crystal Structure Of Peptide-Binding Domain Of Kar2 | 3e-42 | ||
| 1q5l_A | 135 | Nmr Structure Of The Substrate Binding Domain Of Dn | 9e-42 | ||
| 1dg4_A | 115 | Nmr Structure Of The Substrate Binding Domain Of Dn | 1e-41 | ||
| 1xqs_C | 191 | Crystal Structure Of The Hspbp1 Core Domain Complex | 6e-41 | ||
| 2op6_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 8e-40 | ||
| 3dob_A | 152 | Peptide-Binding Domain Of Heat Shock 70 Kda Protein | 7e-39 | ||
| 4gni_A | 409 | Structure Of The Ssz1 Atpase Bound To Atp And Magne | 9e-33 | ||
| 1u00_A | 227 | Hsca Substrate Binding Domain Complexed With The Is | 7e-28 | ||
| 3lz8_A | 329 | Structure Of A Putative Chaperone Dnaj From Klebsie | 3e-25 | ||
| 1exk_A | 79 | Solution Structure Of The Cysteine-Rich Domain Of T | 2e-22 | ||
| 1nlt_A | 248 | The Crystal Structure Of Hsp40 Ydj1 Length = 248 | 8e-18 | ||
| 1xbl_A | 107 | Nmr Structure Of The J-Domain (Residues 2-76) In Th | 5e-13 | ||
| 1bq0_A | 103 | J-Domain (Residues 1-77) Of The Escherichia Coli N- | 4e-12 | ||
| 2ctt_A | 104 | Solution Structure Of Zinc Finger Domain From Human | 3e-10 | ||
| 1jcf_A | 344 | Mreb From Thermotoga Maritima, Trigonal Length = 34 | 8e-10 | ||
| 1jce_A | 344 | Mreb From Thermotoga Maritima Length = 344 | 2e-08 | ||
| 3i38_A | 109 | Structure Of A Putative Chaperone Protein Dnaj From | 3e-08 | ||
| 3h1q_A | 272 | Crystal Structure Of Ethanolamine Utilization Prote | 2e-06 | ||
| 1c3g_A | 170 | S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 1 | 1e-05 | ||
| 2b26_A | 173 | The Crystal Structure Of The Protein Complex Of Yea | 1e-05 | ||
| 1bqz_A | 77 | J-Domain (Residues 1-77) Of The Escherichia Coli N- | 7e-05 | ||
| 3agz_A | 190 | Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi | 3e-04 | ||
| 2qld_A | 183 | Human Hsp40 Hdj1 Length = 183 | 3e-04 | ||
| 3agx_A | 181 | Crystal Structure Of Human Hsp40 Hdj1 Peptide-Bindi | 3e-04 | ||
| 2q2g_A | 180 | Crystal Structure Of Dimerization Domain Of Hsp40 F | 7e-04 |
| >pdb|2KHO|A Chain A, Nmr-Rdc XRAY STRUCTURE OF E. COLI HSP70 (DNAK) CHAPERONE (1-605) Complexed With Adp And Substrate Length = 605 | Back alignment and structure |
|
| >pdb|4B9Q|A Chain A, Open Conformation Of Atp-Bound Hsp70 Homolog Dnak Length = 605 | Back alignment and structure |
|
| >pdb|2V7Y|A Chain A, Crystal Structure Of The Molecular Chaperone Dnak From Geobacillus Kaustophilus Hta426 In Post-Atp Hydrolysis State Length = 509 | Back alignment and structure |
|
| >pdb|1DKG|D Chain D, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 383 | Back alignment and structure |
|
| >pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 554 | Back alignment and structure |
|
| >pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A MUTANT Length = 554 | Back alignment and structure |
|
| >pdb|2V7Z|A Chain A, Crystal Structure Of The 70-Kda Heat Shock Cognate Protein From Rattus Norvegicus In Post-Atp Hydrolysis State Length = 543 | Back alignment and structure |
|
| >pdb|3IUC|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 5 (BipGRP78) ATPASE DOMAIN IN COMPLEX WITH ADP Length = 408 | Back alignment and structure |
|
| >pdb|3LDL|A Chain A, Crystal Structure Of Human Grp78 (70kda Heat Shock Protein 5 BIP) Atpase Domain In Complex With Atp Length = 384 | Back alignment and structure |
|
| >pdb|3FE1|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 6 (Hsp70b') Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 403 | Back alignment and structure |
|
| >pdb|3JXU|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1a (Hsp70-1) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 409 | Back alignment and structure |
|
| >pdb|2E8A|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In Complex With Amp-Pnp Length = 391 | Back alignment and structure |
|
| >pdb|2E88|A Chain A, Crystal Structure Of The Human Hsp70 Atpase Domain In The Apo Form Length = 391 | Back alignment and structure |
|
| >pdb|3A8Y|A Chain A, Crystal Structure Of The Complex Between The Bag5 Bd5 And Hsp70 Nbd Length = 392 | Back alignment and structure |
|
| >pdb|3GDQ|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 1-Like Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 408 | Back alignment and structure |
|
| >pdb|3KVG|A Chain A, Crystal Structure Of The N-Terminal Domain Of Hsp70 (Cgd2_20) From Cryptosporidium Parvum In Complex With Amppnp Length = 400 | Back alignment and structure |
|
| >pdb|1HJO|A Chain A, Atpase Domain Of Human Heat Shock 70kda Protein 1 Length = 380 | Back alignment and structure |
|
| >pdb|3D2F|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 382 | Back alignment and structure |
|
| >pdb|3QFP|A Chain A, Crystal Structure Of Yeast Hsp70 (BipKAR2) ATPASE DOMAIN Length = 390 | Back alignment and structure |
|
| >pdb|1S3X|A Chain A, The Crystal Structure Of The Human Hsp70 Atpase Domain Length = 382 | Back alignment and structure |
|
| >pdb|3D2E|B Chain B, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 382 | Back alignment and structure |
|
| >pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular Chaperone Hsc70. Ii. Potassium Binds Specifically In The Atpase Active Site Length = 386 | Back alignment and structure |
|
| >pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 386 | Back alignment and structure |
|
| >pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate Protein Atp Hydrolytic Activity, Ii. Structure Of The Active Site With Adp Or Atp Bound To Wild Type And Mutant Atpase Fragment Length = 386 | Back alignment and structure |
|
| >pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal 1nge 3 Length = 386 | Back alignment and structure |
|
| >pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences The Structure Of The Active Site But Is Not Essential For Atp Hydrolysis Length = 386 | Back alignment and structure |
|
| >pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin (810-910aa)d876c In The AdpPi State Length = 394 | Back alignment and structure |
|
| >pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|3CQX|A Chain A, Chaperone Complex Length = 386 | Back alignment and structure |
|
| >pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal Mutant With Cys 17 Replaced By Lys Length = 386 | Back alignment and structure |
|
| >pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The Hsc70 Atpase Domain Length = 400 | Back alignment and structure |
|
| >pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP Length = 381 | Back alignment and structure |
|
| >pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1QQN|A Chain A, D206s Mutant Of Bovine 70 Kilodalton Heat Shock Protein Length = 378 | Back alignment and structure |
|
| >pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant Length = 381 | Back alignment and structure |
|
| >pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant Length = 381 | Back alignment and structure |
|
| >pdb|3I33|A Chain A, Crystal Structure Of The Human 70kda Heat Shock Protein 2 (Hsp70-2) Atpase Domain In Complex With Adp And Inorganic Phosphate Length = 404 | Back alignment and structure |
|
| >pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70 Length = 381 | Back alignment and structure |
|
| >pdb|4FSV|A Chain A, Crystal Structure Of A Heat Shock 70kda Protein 2 (Hspa2) From Homo Sapiens At 1.80 A Resolution Length = 387 | Back alignment and structure |
|
| >pdb|3GL1|A Chain A, Crystal Structure Of Atpase Domain Of Ssb1 Chaperone, A Member Of The Hsp70 Family, From Saccharomyces Cerevisiae Length = 387 | Back alignment and structure |
|
| >pdb|3DPO|A Chain A, Crystal Structure Of The Substrate Binding Domain Of E. Coli Dnak In Complex With A Short Pyrrhocoricin-Derived Inhibitor Peptide Length = 219 | Back alignment and structure |
|
| >pdb|1DKX|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 1 Selenomethionyl Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1DKY|A Chain A, The Substrate Binding Domain Of Dnak In Complex With A Substrate Peptide, Determined From Type 2 Native Crystals Length = 219 | Back alignment and structure |
|
| >pdb|1BPR|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak, Minimized Average Structure Length = 191 | Back alignment and structure |
|
| >pdb|3N8E|A Chain A, Substrate Binding Domain Of The Human Heat Shock 70kda Prote (Mortalin) Length = 182 | Back alignment and structure |
|
| >pdb|3D2F|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70 Length = 675 | Back alignment and structure |
|
| >pdb|3C7N|A Chain A, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex Length = 668 | Back alignment and structure |
|
| >pdb|3D2E|A Chain A, Crystal Structure Of A Complex Of Sse1p And Hsp70, Selenomethionine- Labeled Crystals Length = 675 | Back alignment and structure |
|
| >pdb|3DQG|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F, Mitochondrial Precursor, From Caenorhabditis Elegans. Length = 151 | Back alignment and structure |
|
| >pdb|2QXL|A Chain A, Crystal Structure Analysis Of Sse1, A Yeast Hsp110 Length = 658 | Back alignment and structure |
|
| >pdb|1CKR|A Chain A, High Resolution Solution Structure Of The Heat Shock Cognate-70 Kd Substrate Binding Domain Obtained By Multidimensional Nmr Techniques Length = 159 | Back alignment and structure |
|
| >pdb|3H0X|A Chain A, Crystal Structure Of Peptide-Binding Domain Of Kar2 Protein From Saccharomyces Cerevisiae Length = 152 | Back alignment and structure |
|
| >pdb|1Q5L|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak Bound To The Peptide Nrllltg Length = 135 | Back alignment and structure |
|
| >pdb|1DG4|A Chain A, Nmr Structure Of The Substrate Binding Domain Of Dnak In The Apo Form Length = 115 | Back alignment and structure |
|
| >pdb|1XQS|C Chain C, Crystal Structure Of The Hspbp1 Core Domain Complexed With The Fragment Of Hsp70 Atpase Domain Length = 191 | Back alignment and structure |
|
| >pdb|2OP6|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein D Precursor From C.Elegans Length = 152 | Back alignment and structure |
|
| >pdb|3DOB|A Chain A, Peptide-Binding Domain Of Heat Shock 70 Kda Protein F44e5.5 From C.Elegans. Length = 152 | Back alignment and structure |
|
| >pdb|4GNI|A Chain A, Structure Of The Ssz1 Atpase Bound To Atp And Magnesium Length = 409 | Back alignment and structure |
|
| >pdb|1U00|A Chain A, Hsca Substrate Binding Domain Complexed With The Iscu Recognition Peptide Elppvkihc Length = 227 | Back alignment and structure |
|
| >pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A Resolution. Length = 329 | Back alignment and structure |
|
| >pdb|1EXK|A Chain A, Solution Structure Of The Cysteine-Rich Domain Of The Escherichia Coli Chaperone Protein Dnaj Length = 79 | Back alignment and structure |
|
| >pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1 Length = 248 | Back alignment and structure |
|
| >pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The Escherichia Coli N-Terminal Fragment (Residues 2-108) Of The Molecular Chaperone Dnaj, 20 Structures Length = 107 | Back alignment and structure |
|
| >pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-104) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 103 | Back alignment and structure |
|
| >pdb|2CTT|A Chain A, Solution Structure Of Zinc Finger Domain From Human Dnaj Subfamily A Menber 3 Length = 104 | Back alignment and structure |
|
| >pdb|1JCF|A Chain A, Mreb From Thermotoga Maritima, Trigonal Length = 344 | Back alignment and structure |
|
| >pdb|1JCE|A Chain A, Mreb From Thermotoga Maritima Length = 344 | Back alignment and structure |
|
| >pdb|3I38|A Chain A, Structure Of A Putative Chaperone Protein Dnaj From Klebsiella Pneumoniae Subsp. Pneumoniae Mgh 78578 Length = 109 | Back alignment and structure |
|
| >pdb|3H1Q|A Chain A, Crystal Structure Of Ethanolamine Utilization Protein Eutj From Carboxydothermus Hydrogenoformans Length = 272 | Back alignment and structure |
|
| >pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1 Length = 170 | Back alignment and structure |
|
| >pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast Hsp40 Sis1 And Hsp70 Ssa1 Length = 173 | Back alignment and structure |
|
| >pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli N-Terminal Fragment (Residues 1-78) Of The Molecular Chaperone Dnaj, Nmr, 20 Structures Length = 77 | Back alignment and structure |
|
| >pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Complexed With A C-Terminal Peptide Of Hsp70 Length = 190 | Back alignment and structure |
|
| >pdb|2QLD|A Chain A, Human Hsp40 Hdj1 Length = 183 | Back alignment and structure |
|
| >pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding Domain Length = 181 | Back alignment and structure |
|
| >pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From Cryptosporidium Parvum, Cgd2_1800 Length = 180 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 945 | |||
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 0.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 0.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 0.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 0.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 0.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 0.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 0.0 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 1e-112 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 1e-108 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 1e-104 | |
| 1nlt_A | 248 | Protein YDJ1, mitochondrial protein import protein | 3e-98 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 1e-92 | |
| 3lz8_A | 329 | Putative chaperone DNAJ; structure genomics, struc | 6e-89 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 7e-86 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 2e-85 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 3e-85 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 6e-82 | |
| 2ctt_A | 104 | DNAJ homolog subfamily A member 3; ZING finger, be | 2e-54 | |
| 3i38_A | 109 | Putative chaperone DNAJ; structural genomics, prot | 5e-45 | |
| 1c3g_A | 170 | Heat shock protein 40; beta sheets, short helices, | 6e-44 | |
| 2q2g_A | 180 | HSP40 protein, heat shock 40 kDa protein, putative | 6e-42 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 3e-41 | |
| 1exk_A | 79 | DNAJ protein; extended beta-hairpin, CXXCXGXG, zin | 4e-41 | |
| 3agx_A | 181 | DNAJ homolog subfamily B member 1; chaperone; 1.85 | 3e-32 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 3e-30 | |
| 1bq0_A | 103 | DNAJ, HSP40; chaperone, heat shock, protein foldin | 3e-22 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 6e-22 | |
| 1xao_A | 121 | YDJ1, mitochondrial protein import protein MAS5; b | 2e-18 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 3e-16 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-11 | |
| 2lgw_A | 99 | DNAJ homolog subfamily B member 2; J domain, HSJ1A | 2e-13 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 2e-13 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 2e-13 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 3e-12 | |
| 2ctq_A | 112 | DNAJ homolog subfamily C member 12; J-domain, chap | 5e-12 | |
| 2ctr_A | 88 | DNAJ homolog subfamily B member 9; J-domain, chape | 8e-12 | |
| 2dmx_A | 92 | DNAJ homolog subfamily B member 8; DNAJ J domain, | 3e-11 | |
| 2o37_A | 92 | Protein SIS1; HSP40, J-domain, cochaperone, APC900 | 6e-11 | |
| 2ctw_A | 109 | DNAJ homolog subfamily C member 5; J-domain, chape | 9e-11 | |
| 2yua_A | 99 | Williams-beuren syndrome chromosome region 18 prot | 1e-10 | |
| 1hdj_A | 77 | Human HSP40, HDJ-1; molecular chaperone; NMR {Homo | 2e-10 | |
| 2ej7_A | 82 | HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati | 3e-10 | |
| 2l6l_A | 155 | DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, | 3e-10 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 3e-10 | |
| 2ctp_A | 78 | DNAJ homolog subfamily B member 12; J-domain, chap | 7e-10 | |
| 2dn9_A | 79 | DNAJ homolog subfamily A member 3; J-domain, TID1, | 1e-09 | |
| 2cug_A | 88 | Mkiaa0962 protein; DNAJ-like domain, structural ge | 2e-09 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 5e-09 | |
| 2qsa_A | 109 | DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s | 5e-09 | |
| 1wjz_A | 94 | 1700030A21RIK protein; J-domain, DNAJ like protein | 9e-09 | |
| 2och_A | 73 | Hypothetical protein DNJ-12; HSP40, J-domain, chap | 2e-08 | |
| 2pf4_E | 174 | Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, | 2e-08 | |
| 1gh6_A | 114 | Large T antigen; tumor suppressor, oncoprotein, an | 8e-08 | |
| 1iur_A | 88 | KIAA0730 protein; DNAJ like domain, riken structur | 2e-05 | |
| 3uo3_A | 181 | J-type CO-chaperone JAC1, mitochondrial; structura | 3e-05 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 4e-05 |
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Length = 605 | Back alignment and structure |
|---|
Score = 1078 bits (2790), Expect = 0.0
Identities = 397/568 (69%), Positives = 491/568 (86%), Gaps = 3/568 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I++G+ P+V+EN+EG RTTPS+IAY ++GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGR+F ++EVQ+D+S+MP+KI+ ADNGDAW+ V+G+K+APPQISAEVL
Sbjct: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAEDYLG +TEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK +R I VYDLGGGTFD+SIIEI +VDGEK FEVL+TNGDT LGGEDFD R+I+Y
Sbjct: 181 LDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+++EF K GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K
Sbjct: 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++L+ R+IEP ++A++DAG+ VSDI+D+ILVGG TRMP VQ+KV EFFGK
Sbjct: 300 VTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+PR+D+NPDEAVA+GAA+QG VL+GD KD+LLLDVTPLSLGIETMGG+MT +I KNTTIP
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIP 419
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
TK SQVFSTAEDNQ AVT+ V QGER+ + NK LG+FNL+GI PA RG+PQIEVTFDID
Sbjct: 420 TKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
A+GILHV+AKDK +GKE KITIKA+SGL E+EI+KMV+ AEANAE D++ EL ++RN G
Sbjct: 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQG 539
Query: 610 ESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ L+HST+K + +EA + L +K I
Sbjct: 540 DHLLHSTRKQV--EEAGDKLPADDKTAI 565
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Length = 509 | Back alignment and structure |
|---|
Score = 966 bits (2499), Expect = 0.0
Identities = 318/541 (58%), Positives = 404/541 (74%), Gaps = 32/541 (5%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
MSKIIGIDLGTTNSCV+++EG + KVI N EG RTTPSV+A+ +NGE LVG AKRQA+T
Sbjct: 1 MSKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAIT 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP NTI + KR +G + + + GK+ P +ISA +L
Sbjct: 60 NP-NTIISIKRHMGTDY------------------------KVEIEGKQYTPQEISAIIL 94
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+ +K AEDYLG +T AVITVPAYFNDAQRQATKDAGRIAGLEV+RIINEPTAAALA+G
Sbjct: 95 QYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYG 154
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK + D+ I+VYDLGGGTFDVSI+E+ G+ FEV +T GD LGG+DFDQ IIDY
Sbjct: 155 LDK--EEDQTILVYDLGGGTFDVSILEL----GDGVFEVKATAGDNHLGGDDFDQVIIDY 208
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
++++F + +GIDL KD +ALQR+K +AE+AK ELS QT+I+ P+I+ + P+HL +
Sbjct: 209 LVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMT 268
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAK E L L+ RT+ P R A++DAG+ +DI+ +ILVGG TR+P VQE +K GK
Sbjct: 269 LTRAKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGK 328
Query: 430 DPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIP 489
+P + +NPDE VA+GAAIQG V++G+ KD++LLDVTPLSLGIETMGG+ TK+I++NTTIP
Sbjct: 329 EPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIP 388
Query: 490 TKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549
T SQVF+TA DNQ V + V QGER M + NK LG F L GIPPA RG+PQIEVTFDID
Sbjct: 389 TSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDID 448
Query: 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHG 609
ANGI+HV AKD T KE ITIK++SGL+EEEI++M++ AE NAE D++ +E AE RN
Sbjct: 449 ANGIVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEA 508
Query: 610 E 610
+
Sbjct: 509 D 509
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Length = 554 | Back alignment and structure |
|---|
Score = 918 bits (2376), Expect = 0.0
Identities = 290/563 (51%), Positives = 393/563 (69%), Gaps = 20/563 (3%)
Query: 70 MSK--IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQA 127
MSK +GIDLGTT SCV + + + ++I N +G RTTPS +A+ + E L+G AK Q
Sbjct: 1 MSKGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQV 59
Query: 128 VTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIV-KADNGDAWISVRG--KKLAPPQI 184
NP NT++ AKRLIGR+F++ VQ D+ P+ +V A + +G K P ++
Sbjct: 60 AMNPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEV 119
Query: 185 SAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAA 244
S+ VL KMK+ AE YLG +T AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAA
Sbjct: 120 SSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAA 179
Query: 245 ALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
A+A+GLDK ++RN++++DLGGGTFDVSI+ I FEV ST GDT LGGEDFD
Sbjct: 180 AIAYGLDKKVGAERNVLIFDLGGGTFDVSILTI----AAGIFEVKSTAGDTHLGGEDFDN 235
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
R++++ + EF + + D+ ++ A++R++ + ERAK LSSS Q I + +
Sbjct: 236 RMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----I 291
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
ITRA+ E L +L T++P A++DA + S I+DI+LVGG TR+PK+Q+ ++
Sbjct: 292 DFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQ 351
Query: 425 EFF-GKDPRRDINPDEAVAVGAAIQGSVLSGDR----KDLLLLDVTPLSLGIETMGGIMT 479
+FF GK+ + INPDEAVA GAA+Q ++LSGD+ +DLLLLDVTPLSLGIET GG+MT
Sbjct: 352 DFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMT 411
Query: 480 KMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGI 539
+IK+NTTIPTK +Q F+T DNQP V ++VY+GER M N +LG+F L GIPPA RG+
Sbjct: 412 VLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGV 471
Query: 540 PQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEEIKKMVQSAEANAEEDKR 598
PQIEVTFDIDANGIL+V+A DK TGKENKITI + G L++E+I++MVQ AE ED++
Sbjct: 472 PQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEK 531
Query: 599 LRELAESRNHGESLIHSTKKSLK 621
R+ S+N ES + K +++
Sbjct: 532 QRDKVSSKNSLESYAFNMKATVE 554
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Length = 675 | Back alignment and structure |
|---|
Score = 803 bits (2077), Expect = 0.0
Identities = 148/596 (24%), Positives = 276/596 (46%), Gaps = 41/596 (6%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
MS G+DLG NS +++ ++ N R+TPSV+ + +G K + +
Sbjct: 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGP-KNRYLGETGKNKQTS 59
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR----GKKLAPPQIS 185
N KNT+ KR+IG ++ + +++ K+V+ D+ VR + Q++
Sbjct: 60 NIKNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLA 119
Query: 186 AEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAA 245
A + K+K T + IT+ I VP ++ + QR DA RIAGL RI+N+ TAA
Sbjct: 120 AMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAG 179
Query: 246 LAFGLDKSG-----KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300
+++G+ K+ + R + D+G ++ SI+ Q +VL T D GG
Sbjct: 180 VSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKK----GQLKVLGTACDKHFGGR 235
Query: 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN 360
DFD I ++ DEF ID+R++ A RI +AE+ K LS++ + ++ N
Sbjct: 236 DFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVE--SVMN 293
Query: 361 GAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQ 420
V ++ +++R +LE LV L+ R EP A+ A + +++ + ++GG TR+P ++
Sbjct: 294 D--VDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLK 351
Query: 421 EKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRK--DLLLLDVTPLSLGIETMGGI- 477
+ + E FGK +N DEA+A GAA ++ S + D+ P S+ +
Sbjct: 352 QSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVE 411
Query: 478 ---MTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGI-- 532
++ ++ P+ + D A + + + + G+
Sbjct: 412 DEDHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQL 469
Query: 533 PPALRGIPQIEVTFDIDANGILHV----------TAKDKKTGKENKITIKANSG-LTEEE 581
P +P +++ D +G+ + D KT K++ +TI A++ L ++
Sbjct: 470 PEGQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKK 528
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
+ ++++ +DK + E + +N E I++ + L+ + A SD+EK +
Sbjct: 529 LNELIEKENEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYA-PFASDAEKTKL 583
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Length = 383 | Back alignment and structure |
|---|
Score = 769 bits (1988), Expect = 0.0
Identities = 272/384 (70%), Positives = 339/384 (88%), Gaps = 1/384 (0%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
M KIIGIDLGTTNSCV+I++G+ P+V+EN+EG RTTPS+IAY ++GE LVG PAKRQAVT
Sbjct: 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVT 60
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVL 189
NP+NT++A KRLIGR+F ++EVQ+D+S+MP+KI+ ADNGDAW+ V+G+K+APPQISAEVL
Sbjct: 61 NPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVL 120
Query: 190 RKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFG 249
+KMKKTAEDYLG +TEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+G
Sbjct: 121 KKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYG 180
Query: 250 LDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309
LDK +R I VYDLGGGTFD+SIIEI +VDGEK FEVL+TNGDT LGGEDFD R+I+Y
Sbjct: 181 LDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239
Query: 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLK 369
+++EF K GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K
Sbjct: 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIK 299
Query: 370 ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGK 429
+TRAKLE LV++L+ R+IE ++A++DAG+ VSDI+D+ILVGG TRMP VQ+KV EFFGK
Sbjct: 300 VTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGK 359
Query: 430 DPRRDINPDEAVAVGAAIQGSVLS 453
+PR+D+NPDEAVA+GAA+QG VL+
Sbjct: 360 EPRKDVNPDEAVAIGAAVQGGVLT 383
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ... Length = 404 | Back alignment and structure |
|---|
Score = 598 bits (1544), Expect = 0.0
Identities = 190/392 (48%), Positives = 258/392 (65%), Gaps = 15/392 (3%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVT 129
IGIDLGTT SCV + + + ++I N +G RTTPS +A+ + E L+G AK Q
Sbjct: 22 SMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAM 80
Query: 130 NPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIV-KADNGDAWISVRG--KKLAPPQISA 186
NP NTI+ AKRLIGRKF + VQ D+ P+++V + + +G K P +IS+
Sbjct: 81 NPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISS 140
Query: 187 EVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAAL 246
VL KMK+ AE YLGG++ AVITVPAYFND+QRQATKDAG I GL V RIINEPTAAA+
Sbjct: 141 MVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAI 200
Query: 247 AFGLDKSGKSD--RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQ 304
A+GLDK G + +N++++DLGGGTFDVSI+ I D FEV ST GDT LGGEDFD
Sbjct: 201 AYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDFDN 256
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
R++ ++ +EF + + D+ + A++R++ + ERAK LSSS Q I + V
Sbjct: 257 RMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----V 312
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
ITRA+ E L +L T+EP A++DA + I +I+LVGG TR+PK+Q+ ++
Sbjct: 313 DFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQ 372
Query: 425 EFF-GKDPRRDINPDEAVAVGAAIQGSVLSGD 455
+FF GK+ + INPDEAVA GAA+Q ++L GD
Sbjct: 373 DFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} Length = 182 | Back alignment and structure |
|---|
Score = 341 bits (877), Expect = e-112
Identities = 100/174 (57%), Positives = 131/174 (75%)
Query: 448 QGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVT 507
G L + +DVTPLSLGIET+GG+ TK+I +NTTIPTK SQVFSTA D Q V
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 508 VKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKEN 567
+KV QGEREM NK+LG+F L GIPPA RG+PQIEVTFDIDANGI+HV+AKDK TG+E
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 568 KITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLK 621
+I I+++ GL++++I+ MV++AE AEED+R +E E+ N E +IH T+ ++
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A Length = 219 | Back alignment and structure |
|---|
Score = 331 bits (851), Expect = e-108
Identities = 120/179 (67%), Positives = 147/179 (82%), Gaps = 2/179 (1%)
Query: 459 LLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMV 518
+LLLDVTPLSLGIETMGG+MT +I KNTTIPTK SQVFSTAEDNQ AVT+ V QGER+
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 519 SGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLT 578
+ NK LG+FNL+GI PA RG+PQIEVTFDIDA+GILHV+AKDK +GKE KITIKA+SGL
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 579 EEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
E+EI+KMV+ AEANAE D++ EL ++RN G+ L+HST+K + +EA + L +K I
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPADDKTAI 177
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 Length = 227 | Back alignment and structure |
|---|
Score = 322 bits (829), Expect = e-104
Identities = 75/176 (42%), Positives = 111/176 (63%), Gaps = 2/176 (1%)
Query: 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGN 521
+DV PLSLG+ETMGG++ K+I +NTTIP +Q F+T +D Q A+++ V QGERE+V
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 522 KILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEE 581
+ L F L GIP G I VTF +DA+G+L VTA +K TG E I +K + GLT+ E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
I M++ + + AE+D + R LAE + ++ S +L +LS +E+++I
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL--AADAALLSAAERQVI 174
|
| >1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 Length = 248 | Back alignment and structure |
|---|
Score = 307 bits (789), Expect = 3e-98
Identities = 70/237 (29%), Positives = 104/237 (43%), Gaps = 11/237 (4%)
Query: 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ 748
GKD+++ + +LE+ G + + +CK C G G KKG C +C+GQG +
Sbjct: 11 GKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVK-KCTSCNGQGIKFVT 69
Query: 749 Q----GFFSIQQTCPKCQGAGKVIP--HPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIR 802
+ Q C C G G +I C CNG K LEV + G+++ RI
Sbjct: 70 RQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIV 129
Query: 803 STGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNG 862
G + + G++ + +PHK F+RDGDDL YE I TA GGE ++G
Sbjct: 130 FKGEADQAPDVIP-GDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSG 188
Query: 863 KAFFV-IPEG--TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLL 916
V I G G + GKG+ + G+L TI+ P ++ L
Sbjct: 189 DWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLK 245
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} Length = 151 | Back alignment and structure |
|---|
Score = 289 bits (741), Expect = 1e-92
Identities = 93/148 (62%), Positives = 122/148 (82%)
Query: 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNK 522
DVTPLSLGIET+GGIMTK+I +NTTIPTK SQVFSTA D Q V +KV+QGEREM + NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 523 ILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEI 582
+LG+F+L GIPPA RG+PQ+EVTFDIDANGI++V+A+D+ TGKE +I I+++ GL++++I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 583 KKMVQSAEANAEEDKRLRELAESRNHGE 610
+ M++ AE NA ED + +EL E N E
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQAE 151
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329 | Back alignment and structure |
|---|
Score = 285 bits (732), Expect = 6e-89
Identities = 87/314 (27%), Positives = 130/314 (41%), Gaps = 61/314 (19%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRD 681
+ EA+EVL D ++R YDQ DP + E S F DIF +FG +
Sbjct: 73 LAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQTHEQSYSQQDFDDIFSSMFGQQAHQR 132
Query: 682 NNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSG 741
+ G DL + + LE+ + S
Sbjct: 133 RRQHAARGHDLEIEVAVFLEETL--------------------AEQTRTIS--------- 163
Query: 742 QGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRI 801
P + G+ + KTL VKIPAG+ + RI
Sbjct: 164 --------------------------YNLPVYNVFGMIESETPKTLNVKIPAGVVDGQRI 197
Query: 802 RSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLN 861
R G G PG NGG NG+L++ IHI PH +F+ G +L +P++ AALG ++ PTL
Sbjct: 198 RLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLK 257
Query: 862 GKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLET 921
+P G+Q+G+ R++GKG+ + GDLF + I P + E ++L + L
Sbjct: 258 ESILLTVPPGSQAGQRLRIKGKGLV--SKTHTGDLFAVIKIVMPTKPDEKARELWQQLAA 315
Query: 922 SILEGGFKHNPRTK 935
+ E F +PR
Sbjct: 316 A--EASF--DPRKT 325
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 7e-86
Identities = 86/149 (57%), Positives = 114/149 (76%), Gaps = 1/149 (0%)
Query: 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNK 522
DV PL+LGIET+GG+MTK+I +NT IPTK SQVFSTA D+Q AV++ +Y+GER MV N
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 523 ILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEE 581
LG F++ GIPPA RG+PQIEVTF+ID NGILHV+A+DK TG +NK+TI + L+ E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGE 610
I++M+ A+ A +D+ +E ESRN E
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A Length = 152 | Back alignment and structure |
|---|
Score = 269 bits (691), Expect = 2e-85
Identities = 91/149 (61%), Positives = 109/149 (73%), Gaps = 1/149 (0%)
Query: 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNK 522
DV L+LGIET GG+MT +IK+NT IPTK SQ+FSTA DNQP V +KVY+GER M N
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 523 ILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEE 581
+LG+F L GIPPA RG+PQIEVTF +DANGIL V+A DK TGK ITI + G LT+EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGE 610
I +MV+ AE A ED ++ ESRN E
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} Length = 152 | Back alignment and structure |
|---|
Score = 269 bits (689), Expect = 3e-85
Identities = 85/149 (57%), Positives = 108/149 (72%), Gaps = 1/149 (0%)
Query: 463 DVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNK 522
DV PLSLGIET GG+MT +I +NT IPTK + F+T DNQP V+++VY+GER M N
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 523 ILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEE 581
LG F L GIPPA RG+PQIEVTF+IDANGIL+V+A+DK TGK N+ITI+ G LT+ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 582 IKKMVQSAEANAEEDKRLRELAESRNHGE 610
I +MV A+ +ED RE ++RN E
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 Length = 135 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 6e-82
Identities = 90/135 (66%), Positives = 108/135 (80%)
Query: 443 VGAAIQGSVLSGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDN 502
+G++ + ++DVTPLSLGIETMGG+MT +I KNTTIPTK SQVFSTAEDN
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 503 QPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKK 562
Q AVT+ V QGER+ + NK LG+FNL+GI PA RG+PQIEVTFDIDA+GILHV+AKDK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 563 TGKENKITIKANSGL 577
+GKE KITIKA+SGL
Sbjct: 121 SGKEQKITIKASSGL 135
|
| >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 104 | Back alignment and structure |
|---|
Score = 183 bits (466), Expect = 2e-54
Identities = 35/102 (34%), Positives = 47/102 (46%)
Query: 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ 748
G +E+T QAA G N V D C+ C G G + GT C C G G +
Sbjct: 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETIN 60
Query: 749 QGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVK 790
G F ++ TC +C G G +I PC+ C G G+ K+ K
Sbjct: 61 TGPFVMRSTCRRCGGRGSIIISPCVVCRGAGQAKQKKRSGPS 102
|
| >3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} Length = 109 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 5e-45
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 827 PHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIK 886
H +F+ G +L +P++ AALG ++ PTL +P G+Q+G+ R++GKG+
Sbjct: 3 AHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLV 62
Query: 887 NIRSSIPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTK 935
+ GDLF + I P + E ++L + L +PR
Sbjct: 63 --SKTHTGDLFAVIKIVMPTKPDEKARELWQQLA----AAEASFDPRKT 105
|
| >1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A Length = 170 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 6e-44
Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 5/158 (3%)
Query: 761 CQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLY 820
G K G +++++ G + +I G+ G L
Sbjct: 15 FVGKKKSFKIGR---KGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71
Query: 821 IEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFR 879
I K H F+RDGDDL Y +P+SF + LG T++G+ + + Q +
Sbjct: 72 FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTST 131
Query: 880 LRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLL 916
G+G+ ++ S G+L ++ P+ L + QK+ +
Sbjct: 132 YPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAI 169
|
| >2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} Length = 180 | Back alignment and structure |
|---|
Score = 150 bits (381), Expect = 6e-42
Identities = 39/161 (24%), Positives = 59/161 (36%), Gaps = 2/161 (1%)
Query: 761 CQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLY 820
G K I +EV+I G ++ ++ +G G+ G S G+L
Sbjct: 18 YLGKRKKIKVTRKRFIEHKVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLV 77
Query: 821 IEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEGTQSGKIFR 879
+ I K H F RD L ++ I A G TL+ + + I E
Sbjct: 78 LIIQTKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKI 137
Query: 880 LRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
+ +G+ GDL I P LT QKKL++
Sbjct: 138 VPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEA 178
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Length = 272 | Back alignment and structure |
|---|
Score = 151 bits (384), Expect = 3e-41
Identities = 59/382 (15%), Positives = 113/382 (29%), Gaps = 113/382 (29%)
Query: 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAKRQA 127
+ + L N + + P + +I+ V +
Sbjct: 2 NAMELEQKLNLLNDLI----------VREIVNPLPPPYKVGVDLGTADIVLVVTDQEGIP 51
Query: 128 VTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAE 187
V + A V+ + + +
Sbjct: 52 V--AGA-LKWAS---------------------------------VVKDGLVVDYIGAIQ 75
Query: 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 247
++R++K E LG E+ +A +P +A AGLE+ +++EP AAA A
Sbjct: 76 IVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARA 135
Query: 248 FGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307
G++ +V D+GGGT +++IE + + D GG +
Sbjct: 136 LGINDG-------IVVDIGGGTTGIAVIEKGKI-------TAT--FDEPTGGTHLSLVLA 179
Query: 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLN 367
F + AE K + S ++
Sbjct: 180 GSYKIPFEE-------------------AETIKKDFSRHRE------------------- 201
Query: 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427
+ ++ IE + +K+ + +VGG + E+ F
Sbjct: 202 -----------IMRVVRPVIEKMALIVKEVIKNYDQTLPVYVVGGTAYLTGFSEEFSRFL 250
Query: 428 GKDPRRDINPDEAVAVGAAIQG 449
GK+ + I+P +G A+ G
Sbjct: 251 GKEVQVPIHPLLVTPLGIALFG 272
|
| >1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 Length = 79 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 4e-41
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 706 GFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765
G IR+P+ + C C+G+GAK GT P +C TC G GQV+M+QGFF++QQTCP CQG G
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60
Query: 766 KVIPHPCLDCNGIGRIKRN 784
+I PC C+G GR++R+
Sbjct: 61 TLIKDPCNKCHGHGRVERS 79
|
| >3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A Length = 181 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-32
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 753 SIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN 812
S+++ C K I H L+ +G +K L +++ G + +I G+
Sbjct: 12 SLEEIYSGCTKKMK-ISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTS- 69
Query: 813 GGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEG 871
++ + KPH +F+RDG D+ Y IS A G + PTL+G+ V +
Sbjct: 70 NNIPADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDV 129
Query: 872 TQSGKIFRLRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLLRSL 919
+ G ++ G+G+ ++ GDL + P ++ + + +L +
Sbjct: 130 IRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQV 178
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Length = 320 | Back alignment and structure |
|---|
Score = 121 bits (304), Expect = 3e-30
Identities = 47/381 (12%), Positives = 114/381 (29%), Gaps = 65/381 (17%)
Query: 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPK 132
++ ID G+TN + E + S +++ + G N +
Sbjct: 2 LVFIDDGSTNIKLQWQESDGTI--------KQHISPNSFKREWAVSFGDKKVFNYTLNGE 53
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
+ + V +I+ + A + G ++ I +
Sbjct: 54 ------QYSFDPISPDAVVTTNIAWQYSDVNVVAVHHA-LLTSGLPVSEVDIVCTL---- 102
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
+Y + + +++ T + G ++ +++ E A +
Sbjct: 103 --PLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQEL 160
Query: 253 SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD 312
++++ DLGG T D+S + K + GD+ LG + D +
Sbjct: 161 --DELDSLLIIDLGGTTLDISQVM------GKLSGISKIYGDSSLGVSLVTSAVKDALSL 212
Query: 313 EFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITR 372
K + +A I + ++ + + +I+
Sbjct: 213 ARTKGS------SYLADDIIIHRKDNNYLKQRINDENKISI------------------- 247
Query: 373 AKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
V E + + + + + S ++++GG + + + VK+
Sbjct: 248 ------VTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDE 299
Query: 433 RDI---NPDEAVAVGAAIQGS 450
R N + G + G+
Sbjct: 300 RFFKTNNSQYDLVNGMYLIGN 320
|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103 | Back alignment and structure |
|---|
Score = 91.1 bits (227), Expect = 3e-22
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFG 675
+IKEAYEVL+DS+KR YDQYGHA + G ++F+D FGD+FGDIFG
Sbjct: 48 EIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGADFSDIFGDVFGDIFG 102
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Length = 346 | Back alignment and structure |
|---|
Score = 97.5 bits (242), Expect = 6e-22
Identities = 61/391 (15%), Positives = 119/391 (30%), Gaps = 93/391 (23%)
Query: 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNP 131
++G+D+G ++ KVI PS A E +G +
Sbjct: 22 VVVGLDVGYGDT----------KVIGVDGKRIIFPSRWAVTETESWGIGGKIPVLSTDGG 71
Query: 132 KNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRK 191
+ K A + + +LA + +
Sbjct: 72 QTKFIYGKY------------------------ASGNNIRVPQGDGRLASKEAFPLIAAA 107
Query: 192 MKKTAEDYLGGEITEAVIT-VPAYFNDAQRQATKDA------------GRIAGLEVKRII 238
+ ++ G + + + P D + +A K+A G + + R+I
Sbjct: 108 LWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLI 167
Query: 239 NEPTAAALAFGLDKSG---KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDT 295
P A L G + VV D+G T DV I + D++ V+ +
Sbjct: 168 MRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-----VVELSFSL 222
Query: 296 FLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPY 355
+G D + I E + DL A+ A +Q ++ P
Sbjct: 223 QIGVGDAISALSRKIAKETGFVVPFDL-------------AQEALSHPVMFRQKQVGGP- 268
Query: 356 IAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTR 415
+++ LE L + +I + +V + +I VGG +
Sbjct: 269 -------------EVSGPILEDLANRIIEN-------IRLNLRGEVDRVTSLIPVGGGSN 308
Query: 416 MPKVQEKVKEFFGKDPRRDI--NPDEAVAVG 444
+ + ++ +E + + A A+G
Sbjct: 309 L--IGDRFEEIAPGTLVKIKPEDLQFANALG 337
|
| >1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} Length = 121 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 2e-18
Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Query: 831 FERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV-IPEG--TQSGKIFRLRGKGIKN 887
F+RDGDDL YE I TA GGE ++G V I G G + GKG+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 888 IRSSIPGDLFCHVTIETP--VQLTEYQKKLLRSL 919
+ G+L TI+ P +E K L +
Sbjct: 62 PKYGGYGNLIIKFTIKFPENHFTSEENLKKLEEI 95
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 3e-16
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 21/147 (14%)
Query: 588 SAEANAEEDKR-LRELAE----SRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642
S A++ E ++ ++LA +N H LKI AYEVL D + R YD+YG
Sbjct: 11 SKTASSREIRQAFKKLALKLHPDKNPNNPNAH--GDFLKINRAYEVLKDEDLRKKYDKYG 68
Query: 643 HAGIDPNMSGSSASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGK------------ 690
G++ N G S S + FG D +R + N
Sbjct: 69 EKGLEDNQGGQYES--WSYYRYDFGIYDDDPEIITLERREFDAAVNSGELWFVNFYSPGC 126
Query: 691 DLRYNLEITLEQAAYGFNTSIRVPSWD 717
++L T + A + +R+ + +
Sbjct: 127 SHCHDLAPTWREFAKEVDGLLRIGAVN 153
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 79.9 bits (196), Expect = 2e-15
Identities = 63/433 (14%), Positives = 141/433 (32%), Gaps = 134/433 (30%)
Query: 279 DVD-GEKQF---EVLSTNGDTFLGGEDFD-------------QRIIDYILDEFNKINGID 321
D + GE Q+ ++LS D F+ ++FD + ID+I+ + ++G
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV--DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTL 65
Query: 322 ------LRKDSIALQRIKASAERAKIE-LSSSKQTEINEP------YIA----MSNGAPV 364
L K +Q+ R + L S +TE +P YI + N V
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125
Query: 365 HLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVK 424
++R + L ++ A +++ ++++ G +
Sbjct: 126 FAKYNVSRLQPYL---------------KLRQALLELRPAKNVLIDG----VLG------ 160
Query: 425 EFFGKDPRRDINPDEAVAVGAAIQGSVLSGDR-KDLLLLDVTP-----LSLG-IETMGGI 477
GK + ++ D + L+L + +
Sbjct: 161 --SGK--------------------TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 478 MTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPAL- 536
+ + + + +++ D+ + ++++ + E+ + L + L
Sbjct: 199 LEML----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL----RRL--LKSKPYENCLL 248
Query: 537 --RGI--PQIEVTFDIDANGILHVTAKDK------KTGKENKITI-KANSGLTEEEIKKM 585
+ + F++ IL +T + K I++ + LT +E+K +
Sbjct: 249 VLLNVQNAKAWNAFNLSCK-IL-LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306
Query: 586 VQSAEANAEEDKRLRELAESRNH------GESLI----------HSTKKSLK--IKEAYE 627
+ +D L + N ES+ H L I+ +
Sbjct: 307 LLKYLDCRPQD--LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 628 VLSDSEKRIIYDQ 640
VL +E R ++D+
Sbjct: 365 VLEPAEYRKMFDR 377
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.0 bits (173), Expect = 2e-12
Identities = 101/680 (14%), Positives = 192/680 (28%), Gaps = 212/680 (31%)
Query: 83 SCVSIIEGSQPKVIENSEGART---TPSVIAYQENGEILVGAPAKRQA-------VTNPK 132
I+ + ++N + S+++ +E I++ A ++ +
Sbjct: 17 QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQE 76
Query: 133 NTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKM 192
+ KF E+ ++ + YK ++ + Q ++ +M
Sbjct: 77 EMVQ--------KFVEEVLRIN-----YK---------FLM---SPIKTEQRQPSMMTRM 111
Query: 193 KKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDK 252
D L +ND Q A V R L L
Sbjct: 112 YIEQRDRL--------------YNDNQV--------FAKYNVSR---LQPYLKLRQAL-L 145
Query: 253 SGKSDRNIVVYDLGG-G----TFDVSIIEIADVDGEKQFEVLSTNGDTF---LGGEDFDQ 304
+ +N+++ + G G DV + + + F L + +
Sbjct: 146 ELRPAKNVLIDGVLGSGKTWVALDV----CLSYKVQCKM-----DFKIFWLNLKNCNSPE 196
Query: 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV 364
+++ + +I+ + S IK + EL ++ ++PY
Sbjct: 197 TVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQAEL---RRLLKSKPY--------- 243
Query: 365 HLNLKITRAKLELLV-DEL-ITRTIEP----CRIAI--KDAGIKVSDINDIILVGGMTRM 416
LLV + + C+I + + V+D L T
Sbjct: 244 ------ENC---LLVLLNVQNAKAWNAFNLSCKILLTTRFKQ--VTD----FLSAATTTH 288
Query: 417 PKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDL--LLLDVTPLSLGIETM 474
+ PDE ++ L +DL +L P L I
Sbjct: 289 ISLDHHSMTL---------TPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRLSI--- 332
Query: 475 GGIMTKMIKKNTTIPT-------KFSQVFSTAEDNQ-PAVTVKVYQGEREMVSGNKILGE 526
I + T K + + ++ + PA K++ L
Sbjct: 333 --IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----------LSV 380
Query: 527 FNLEG--IPPALRGI----PQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEE 580
F IP L + + LH + +K KE+ I+I + E
Sbjct: 381 FP-PSAHIPTILLSLIWFDVIKSDVMVVVNK--LHKYSLVEKQPKESTISI---PSIYLE 434
Query: 581 EIKKMVQSAEANAEEDKRL-RELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYD 639
K+ E + L R + + N I + ++ SD D
Sbjct: 435 LKVKL--------ENEYALHRSIVDHYN--------------IPKTFD--SDDLIPPYLD 470
Query: 640 QY-----GHAGIDPNMSGSSASAEASNFADAFGDIFGDI-FGSNRDR-DNNNKGSNG--- 689
QY GH ++ E F +F D F + R D+ ++G
Sbjct: 471 QYFYSHIGH-----HLKN----IEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 690 ---KDLR-YNLEITLEQAAY 705
+ L+ Y I Y
Sbjct: 522 NTLQQLKFYKPYICDNDPKY 541
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 5e-11
Identities = 86/645 (13%), Positives = 187/645 (28%), Gaps = 216/645 (33%)
Query: 396 DAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGD 455
DA + D D+ Q+ K K +I D + A+ G+
Sbjct: 27 DAFVDNFDCKDV------------QDMPKSILSK---EEI--DHIIMSKDAVSGT----- 64
Query: 456 RKDLLLLDVTPLSLGIETMGGIMTKMIKKNTT-IPTKFSQVFSTAEDNQPAVTVKVYQGE 514
L L LS E + + ++++ N + + E QP++ ++Y +
Sbjct: 65 ---LRLFWTL-LSKQEEMVQKFVEEVLRINYKFLMSPIK-----TEQRQPSMMTRMYIEQ 115
Query: 515 RE-MVSGNKILGEFNLEGIPP--ALR-GIPQIEVTFDIDANGILH------------VTA 558
R+ + + N++ ++N+ + P LR + ++ ++ ++
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV----LIDGVLGSGKTWVALDVC 171
Query: 559 KDKKTGK--ENKIT-IKANSGLTEEEIKKMVQ------------------SAEANAEEDK 597
K + KI + + + E + +M+Q + + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 598 -RLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSAS 656
LR L +S+ + L+ VL + + +
Sbjct: 232 AELRRLLKSKPYENCLL--------------VLLN-----VQN----------------- 255
Query: 657 AEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSW 716
+ +AF ++ I + R + + S I+L+ +
Sbjct: 256 ---AKAWNAF-NLSCKILLTTRFKQVTDFLSAAT----TTHISLDHHSMTLTPD---EVK 304
Query: 717 DICKSCYGNGAKK------GTSPISCFTCSGQGQVRMQQGFFSIQQ----TCPKCQGAGK 766
+ + T+P S + ++ G + C K +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNP---RRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 767 VIPHPCLDCNGIGRIKRN-KTL-----EVKIPAG----------------IENNMRIRST 804
L+ ++ L IP + N + S
Sbjct: 361 S----SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 805 GNGEP-----GLNGGSNGNLYIEIHIKPHKVFERDGDDLH------YEMPISFSTAALGG 853
+P + +Y+E+ +K + LH Y +P +F + L
Sbjct: 417 VEKQPKESTISIPS-----IYLELKVKL-----ENEYALHRSIVDHYNIPKTFDSDDLI- 465
Query: 854 EIEAPTLNGKAFFVIP------EGTQSGKIFR--------LRGKGIKNIRSSIPGDLFCH 899
P L+ + I E + +FR L K IR
Sbjct: 466 ---PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IRHDSTAWNASG 518
Query: 900 VTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRTKTVLNKVKNF 944
+ T QL Y+ + ++P+ + ++N + +F
Sbjct: 519 SILNTLQQLKFYKPYI------------CDNDPKYERLVNAILDF 551
|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 2e-13
Identities = 19/41 (46%), Positives = 25/41 (60%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASN 661
++ EAYEVLSD KR IYD+YG G+ +G S + S
Sbjct: 48 EVAEAYEVLSDKHKREIYDRYGREGLTGTGTGPSRAEAGSG 88
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Length = 329 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 2e-13
Identities = 44/330 (13%), Positives = 95/330 (28%), Gaps = 70/330 (21%)
Query: 155 ISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYL-------------- 200
I + + + I + GK+ + E + KT +
Sbjct: 42 IYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVEDSSETSKTNLIHKLAAYTAITQVLDSN 101
Query: 201 GGEITEAVITVPA--YFNDAQRQATKDA------------GRIAGLEVKRIINEPTAAAL 246
+ V+ P N ++ +D + E+ I + + +
Sbjct: 102 KNNKVQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGV 161
Query: 247 AFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306
F ++ K ++N+ V D GG S+ S G +D R+
Sbjct: 162 LFLEQENFK-NKNVAVIDFGGLNMGFSLY-------RNCVVNPSERFIEEHGVKDLIIRV 213
Query: 307 IDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHL 366
D +N +L + A + + E+ + T I +
Sbjct: 214 G----DALTDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVIKK------------- 256
Query: 367 NLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEF 426
E + + I I+ G K+ ++ +I +GG T+ ++E++ +
Sbjct: 257 -------VKEKFLKDAIK--------LIEKRGFKLDQLDSLIFIGGTTQK--LKEQISKT 299
Query: 427 FGKDPRRDINPDEAVAVGAAIQGSVLSGDR 456
+ + N G +
Sbjct: 300 YPNNSIITNNSQWTTCEGLYKVAVAKYCIQ 329
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Length = 355 | Back alignment and structure |
|---|
Score = 71.6 bits (175), Expect = 2e-13
Identities = 53/409 (12%), Positives = 117/409 (28%), Gaps = 88/409 (21%)
Query: 70 MSK--IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEILVGAPAKRQ 126
MS ++ +D G V + VI PS I L G +
Sbjct: 1 MSNVYVMALDFGNGF--VKGKINDEKFVI---------PSRIGRKTNENNQLKGFVDNKL 49
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISA 186
V+ + L+ + K N + +
Sbjct: 50 DVSEFIINGNNDEVLLFGN---------------DLDKTTNTGKDTASTNDRYDIKSFKD 94
Query: 187 EVLRKMKKTAEDYLGGEITEAVIT---VPAYFNDAQRQATKDAGRIAGLEVK-------- 235
V + A + + + T D Q + K + +E+
Sbjct: 95 LVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINV 154
Query: 236 ---RIINEPTAAALAFGLDKSGK----SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEV 288
+I+ +P L ++ ++ V D G GT + + E+ F +
Sbjct: 155 KGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVI 214
Query: 289 LSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ 348
G DF +RI ++ + SI + I+ E + +L+
Sbjct: 215 N-------KGTIDFYKRIASHVSKKSEGA--------SITPRMIEKGLEYKQCKLNQKTV 259
Query: 349 TEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDII 408
+ + + + + L++E+++ + ++ I+ II
Sbjct: 260 IDFKDEF----------------YKEQDSLIEEVMS--------NFEITVGNINSIDRII 295
Query: 409 LVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRK 457
+ GG + + + ++ + + + G G +L +
Sbjct: 296 VTGGGANI--HFDSLSHYYSDVFEKADDSQFSNVRGYEKLGELLKNKVE 342
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 3e-12
Identities = 62/398 (15%), Positives = 129/398 (32%), Gaps = 86/398 (21%)
Query: 71 SKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTN 130
+ +G+++G + + + G+ P + + +R TP + V
Sbjct: 13 VEALGLEIGASALKLVEVSGNPPAL--KALASRPTPPGLL-------------MEGMVAE 57
Query: 131 PKNTIYAAKRLIGR-KFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQIS-AEV 188
P K L+ + ++ V V A + A I + + P++ E+
Sbjct: 58 PAALAQEIKELLLEARTRKRYV-----------VTALSNLAVIL---RPIQVPKMPLKEM 103
Query: 189 LRKMKKTAEDYLGGEITEAVI--TVPAYFNDAQR----------------QATKDAGRIA 230
++ AE Y+ I E V+ ++ Q +A R A
Sbjct: 104 EEAVRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRGA 163
Query: 231 GLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLS 290
GL + +P A + + DR +V D+G + + ++ +
Sbjct: 164 GLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR----GDKPLA---- 215
Query: 291 TNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTE 350
L G+DF + I + AE K +
Sbjct: 216 -VRVLTLSGKDFTEAIARSFNLDLLA-------------------AEEVKRTYGMATLPT 255
Query: 351 INEPYIAMSNGAPVHLNLKITRAKLELLVDEL---ITRTIEPCRIAIKDAGIKVSDINDI 407
+E + + + + ++ EL + R++E R ++ +
Sbjct: 256 EDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFR-----IQLEEASPEVG 310
Query: 408 ILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGA 445
L+GG +++ + + + G + +NP EAVAV
Sbjct: 311 YLLGGGSKLRGLASLLTDTLGVNLEP-VNPWEAVAVDP 347
|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 5e-12
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFG 671
K+++A E+L++ E R YD + + + A ++ G G
Sbjct: 65 KLQKAKEILTNEESRARYDHWRRSQMSMPFQQWEA---LNDSVKTSGPSSG 112
|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 8e-12
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA 657
I EAYE LSD+ +R YD GH+ S S+
Sbjct: 52 IAEAYETLSDANRRKEYDTLGHSAFTSGKGQSGPSS 87
|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 3e-11
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA 657
+ EAYEVLSDS+KR +YD+ G S S+
Sbjct: 55 LVSEAYEVLSDSKKRSLYDRAGCDSWRAGGGASGPSS 91
|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 6e-11
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSAS 656
I EA+E+L+D +KR IYDQYG
Sbjct: 51 ISEAFEILNDPQKREIYDQYGLEAARSGGPSFGPG 85
|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 9e-11
Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFG 667
I A+ +L+D+ KR IYD+YG G+ N F
Sbjct: 63 INNAHAILTDATKRNIYDKYGSLGLYVAEQFG-----EENVNTYFV 103
|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 1e-10
Identities = 12/36 (33%), Positives = 17/36 (47%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASA 657
I +AY VL + R YD+ + D GS S+
Sbjct: 63 ISQAYVVLGSATLRRKYDRGLLSDEDLRGPGSGPSS 98
|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 2e-10
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649
+I EAY+VLSD KR I+D+YG G+ +
Sbjct: 47 EIAEAYDVLSDPRKREIFDRYGEEGLKGS 75
|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 3e-10
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGID 647
+ EAYEVLSD++KR IYD+YG
Sbjct: 56 VAEAYEVLSDAKKRDIYDRYGSGPSS 81
|
| >2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-10
Identities = 14/117 (11%), Positives = 37/117 (31%), Gaps = 28/117 (23%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAES----RNHGESLIHSTKKS----LKIKEAYEVL 629
++K+ ++L + + + ++ ++I +A+++L
Sbjct: 23 NISDLKQKY-------------QKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKIL 69
Query: 630 SDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDI-------FGDIFGSNRD 679
+ E + YD N+ A + GD G + ++D
Sbjct: 70 GNEETKREYDLQRCEDDLRNVGPVDAQVYLEEMSWNEGDHSFYLSCRCGGKYSVSKD 126
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Length = 344 | Back alignment and structure |
|---|
Score = 61.7 bits (151), Expect = 3e-10
Identities = 95/384 (24%), Positives = 145/384 (37%), Gaps = 138/384 (35%)
Query: 69 IMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAY-QENGEIL-VGAPAKRQ 126
++ K IGIDLGT N+ V + G K I +E PSVIA GEIL VG
Sbjct: 1 MLRKDIGIDLGTANTLV-FLRG---KGIVVNE-----PSVIAIDSTTGEILKVGL----- 46
Query: 127 AVTNPKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISA 186
AK +IG+ P I A
Sbjct: 47 ----------EAKNMIGK-----------------------------------TPATIKA 61
Query: 187 EVLRKMKK--TAEDYLGGEITEA--------------------VITVPAYFNDAQRQATK 224
+R M+ A DY + VI VP D +R+A
Sbjct: 62 --IRPMRDGVIA-DY---TVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAIL 115
Query: 225 DAGRIAGLEVKRIINEPTAAALAFGLD---KSGKSDRNIVVYDLGGGTFDVSIIEIADVD 281
DAG AG +I EP AAA+ L+ SG N+VV D+GGGT +V++I + +
Sbjct: 116 DAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSG----NMVV-DIGGGTTEVAVISLGSI- 169
Query: 282 GEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKI 341
V + + G++ D+ I+ Y+ + + G + +AER KI
Sbjct: 170 ------VTWES--IRIAGDEMDEAIVQYVRETYRVAIG-------------ERTAERVKI 208
Query: 342 ELSSSKQTEINEPYIA------MSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIK 395
E+ + ++ N+ +S G P L + ++ + ++ +E +++
Sbjct: 209 EIGNVFPSKENDELETTVSGIDLSTGLPR--KLTLKGGEVREALRSVVVAIVE----SVR 262
Query: 396 DAGIK-----VSDIND--IILVGG 412
K VSDI + I L GG
Sbjct: 263 TTLEKTPPELVSDIIERGIFLTGG 286
|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 7e-10
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGID 647
I AY VLS+ EKR YDQ+G
Sbjct: 52 IGTAYAVLSNPEKRKQYDQFGSGPSS 77
|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 1e-09
Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 19/74 (25%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAES----RNHGESLIHSTKKSLKIKEAYEVLSDSE 633
+++EIKK +LA+ N + + +K ++ EAYEVLSD
Sbjct: 20 SQKEIKKA-------------YYQLAKKYHPDTNKDDP--KAKEKFSQLAEAYEVLSDEV 64
Query: 634 KRIIYDQYGHAGID 647
KR YD YG
Sbjct: 65 KRKQYDAYGSGPSS 78
|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGHAGID 647
I +AYE+LS+ EKR YD YG
Sbjct: 62 ISKAYEILSNEEKRTNYDHYGSGPSS 87
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780 | Back alignment and structure |
|---|
Score = 59.4 bits (143), Expect = 5e-09
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 617 KKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIFGS 676
LKI AYEVL D + R YD+YG G++ N G S + D +I
Sbjct: 62 GDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDPEIITL 121
Query: 677 NRDRDNNNKGSN----------GKDLRYNLEITLEQAAYGFNTSIRVPSWD 717
R + S G ++L T + A + +R+ + +
Sbjct: 122 ERREFDAAVNSGELWFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVN 172
|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 5e-09
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 587 QSAEANAEEDKRLRELAES----RNHG-ESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQY 641
+ + K R LA R E + + ++ I AYE L D E + YD Y
Sbjct: 25 REEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYY 84
Query: 642 GHAG 645
Sbjct: 85 LDHP 88
|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 9e-09
Identities = 12/93 (12%), Positives = 36/93 (38%), Gaps = 18/93 (19%)
Query: 573 ANSGLTEEEIKKMVQ---------SAEANAEEDKR-LRELAES----RNHGESLIHSTKK 618
+SG + +++ ++ AN + K+ ++L + + + ++
Sbjct: 1 GSSGSSGMALEQTLKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEE 60
Query: 619 SLK----IKEAYEVLSDSEKRIIYDQYGHAGID 647
++ I +A+++L + E + YD
Sbjct: 61 CMQKFIEIDQAWKILGNEETKKKYDLQRSGPSS 93
|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-08
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 622 IKEAYEVLSDSEKRIIYDQYGH 643
I +AYEVLSD +KR IYDQ G
Sbjct: 51 ISQAYEVLSDEKKRQIYDQGGE 72
|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174 | Back alignment and structure |
|---|
Score = 53.8 bits (129), Expect = 2e-08
Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 11/54 (20%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADAFGDIFGDIF 674
K+ Y+ + D K +G + FA + I+
Sbjct: 54 KMNTLYKKMEDGVKYAHQPDFGGFWDATEV-----------FASSLNPGVDAIY 96
|
| >1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 8e-08
Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 2/63 (3%)
Query: 621 KIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSASAEASNFADA-FGDIFGD-IFGSNR 678
K+ Y+ + D K +G + + ++F S+
Sbjct: 51 KMNTLYKKMEDGVKYAHQPDFGGFWDATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSD 110
Query: 679 DRD 681
D
Sbjct: 111 DEA 113
|
| >1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 21/76 (27%)
Query: 576 GLTEEEIKKMVQSAEANAEEDKRLRELAES----RNHGESLIHSTKKSLKIKEAYEVLSD 631
L E E KK++ R L +N + + + ++ L
Sbjct: 27 KLPESERKKII-------------RRLYLKWHPDKNPE-NHDIANEVFKHLQNEINRL-- 70
Query: 632 SEKRIIYDQYGHAGID 647
EK+ DQ
Sbjct: 71 -EKQAFLDQNADRASR 85
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 3e-05
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 596 DKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649
K R+L +++H + +++S + +AY L D +R Y ID
Sbjct: 36 RKEYRQLQ-AQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLT 88
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 4e-05
Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 43/212 (20%)
Query: 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQF-EV 288
++ + + A L K DR +VV +LG + + +G
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEK-DRGVVVVNLGYNFTGLIAYK----NGVPIKISY 233
Query: 289 LSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ 348
+ +G + +I + S L +ER I ++
Sbjct: 234 VP------VGMKH----VIKDV---------------SAVLDTSFEESERLIITHGNAVY 268
Query: 349 TEINE---PYIAMSNGAPVHLNLK----ITRAKL-ELLVDELITRTIEPCRIAIKDAGIK 400
++ E Y + K I A+L E++ + I + G
Sbjct: 269 NDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIM--SKSKKFFREVEAKIVEEGEI 326
Query: 401 VSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432
++L GG ++P++ E E F R
Sbjct: 327 -GIPGGVVLTGGGAKIPRINELATEVFKSPVR 357
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 945 | |||
| 4b9q_A | 605 | Chaperone protein DNAK; HET: ATP; 2.40A {Escherich | 100.0 | |
| 2kho_A | 605 | Heat shock protein 70; molecular chaperone, HSP70, | 100.0 | |
| 1yuw_A | 554 | Heat shock cognate 71 kDa protein; chaperone; 2.60 | 100.0 | |
| 3d2f_A | 675 | Heat shock protein homolog SSE1; nucleotide exchan | 100.0 | |
| 2v7y_A | 509 | Chaperone protein DNAK; HSP70, heat shock protein, | 100.0 | |
| 3i33_A | 404 | Heat shock-related 70 kDa protein 2; protein-ADP c | 100.0 | |
| 1dkg_D | 383 | Molecular chaperone DNAK; HSP70, GRPE, nucleotide | 100.0 | |
| 3qfu_A | 394 | 78 kDa glucose-regulated protein homolog; HSP70, K | 100.0 | |
| 4gni_A | 409 | Putative heat shock protein; HSP70-type ATPase, AT | 100.0 | |
| 1nlt_A | 248 | Protein YDJ1, mitochondrial protein import protein | 100.0 | |
| 3lz8_A | 329 | Putative chaperone DNAJ; structure genomics, struc | 100.0 | |
| 1jce_A | 344 | ROD shape-determining protein MREB; MBL, actin, HS | 100.0 | |
| 3agx_A | 181 | DNAJ homolog subfamily B member 1; chaperone; 1.85 | 100.0 | |
| 2q2g_A | 180 | HSP40 protein, heat shock 40 kDa protein, putative | 100.0 | |
| 1c3g_A | 170 | Heat shock protein 40; beta sheets, short helices, | 100.0 | |
| 4e81_A | 219 | Chaperone protein DNAK; chaperone; 1.90A {Escheric | 99.96 | |
| 3n8e_A | 182 | Stress-70 protein, mitochondrial; beta-sandwich, h | 99.96 | |
| 3dob_A | 152 | Heat shock 70 kDa protein F44E5.5; structural geno | 99.95 | |
| 3h0x_A | 152 | 78 kDa glucose-regulated protein homolog; structur | 99.95 | |
| 3dqg_A | 151 | Heat shock 70 kDa protein F; structural genomics, | 99.95 | |
| 1u00_A | 227 | HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A | 99.94 | |
| 2op6_A | 152 | Heat shock 70 kDa protein D; HSP70/peptide-binding | 99.93 | |
| 3h1q_A | 272 | Ethanolamine utilization protein EUTJ; ethanolamin | 99.92 | |
| 2fsj_A | 346 | Hypothetical protein TA0583; actin homologs, archa | 99.91 | |
| 2ych_A | 377 | Competence protein PILM; cell cycle, type IV pilus | 99.9 | |
| 2fxu_A | 375 | Alpha-actin-1, actin, alpha skeletal muscle; actin | 99.9 | |
| 3i38_A | 109 | Putative chaperone DNAJ; structural genomics, prot | 99.9 | |
| 1k8k_A | 418 | ARP3, actin-like protein 3, actin-2; beta-propelle | 99.89 | |
| 4a2a_A | 419 | Cell division protein FTSA, putative; cell cycle, | 99.89 | |
| 1xao_A | 121 | YDJ1, mitochondrial protein import protein MAS5; b | 99.84 | |
| 1q5l_A | 135 | Chaperone protein DNAK; HSP70, chaperone, heat sho | 99.83 | |
| 2zgy_A | 320 | Plasmid segregation protein PARM; plasmid partitio | 99.79 | |
| 1nlt_A | 248 | Protein YDJ1, mitochondrial protein import protein | 99.77 | |
| 1k8k_B | 394 | ARP2, actin-like protein 2; beta-propeller, struct | 99.74 | |
| 4ehu_A | 276 | Activator of 2-hydroxyisocaproyl-COA dehydratase; | 99.72 | |
| 2ctt_A | 104 | DNAJ homolog subfamily A member 3; ZING finger, be | 99.67 | |
| 3js6_A | 355 | Uncharacterized PARM protein; partition, segregati | 99.57 | |
| 3qb0_A | 498 | Actin-related protein 4; actin fold, ATP binding, | 99.48 | |
| 3dwl_A | 427 | Actin-related protein 3; propellor, actin-binding, | 99.47 | |
| 4apw_A | 329 | ALP12; actin-like protein; 19.70A {Clostridium tet | 99.42 | |
| 1exk_A | 79 | DNAJ protein; extended beta-hairpin, CXXCXGXG, zin | 99.25 | |
| 3ll3_A | 504 | Gluconate kinase; xylulose kinase, nysgx, ATP, ADP | 99.22 | |
| 4fo0_A | 593 | Actin-related protein 8; chromatin remodeling, nuc | 99.14 | |
| 3hz6_A | 511 | Xylulokinase; xylulose, structural genomic, chromo | 99.12 | |
| 2d0o_A | 610 | DIOL dehydratase-reactivating factor large subunit | 99.1 | |
| 3ifr_A | 508 | Carbohydrate kinase, FGGY; xylulose kinase, SGX, s | 99.09 | |
| 1nbw_A | 607 | Glycerol dehydratase reactivase alpha subunit; mol | 99.08 | |
| 3ezw_A | 526 | Glycerol kinase; glycerol metabolism, allosteric r | 99.0 | |
| 3i8b_A | 515 | Xylulose kinase; strain ATCC 15703 / DSM 20083, 11 | 98.99 | |
| 3agx_A | 181 | DNAJ homolog subfamily B member 1; chaperone; 1.85 | 98.93 | |
| 3l0q_A | 554 | Xylulose kinase; xlylulose kinase, SGX, PSI, struc | 98.92 | |
| 4e1j_A | 520 | Glycerol kinase; structural genomics, PSI-biology, | 98.92 | |
| 3h3n_X | 506 | Glycerol kinase; ATP-binding, glycerol metabolism, | 98.87 | |
| 2p3r_A | 510 | Glycerol kinase; glycerol metabolism, allosteric r | 98.86 | |
| 3g25_A | 501 | Glycerol kinase; IDP00743, ATP-binding, glycerol m | 98.84 | |
| 3i38_A | 109 | Putative chaperone DNAJ; structural genomics, prot | 98.81 | |
| 2zf5_O | 497 | Glycerol kinase; hyperthermophilic archaeon, ATP-b | 98.8 | |
| 3lz8_A | 329 | Putative chaperone DNAJ; structure genomics, struc | 98.79 | |
| 1xao_A | 121 | YDJ1, mitochondrial protein import protein MAS5; b | 98.78 | |
| 1hux_A | 270 | Activator of (R)-2-hydroxyglutaryl-COA dehydratase | 98.78 | |
| 2itm_A | 484 | Xylulose kinase, xylulokinase; ATPase, FGGY kinase | 98.73 | |
| 4bc3_A | 538 | Xylulose kinase; transferase, glucuronate xyluloki | 98.72 | |
| 2d4w_A | 504 | Glycerol kinase; alpha and beta protein, ribonucle | 98.62 | |
| 2w40_A | 503 | Glycerol kinase, putative; closed conformation, ma | 98.61 | |
| 2dpn_A | 495 | Glycerol kinase; thermus thermophilus HB8, structu | 98.58 | |
| 2ctt_A | 104 | DNAJ homolog subfamily A member 3; ZING finger, be | 98.58 | |
| 2q2g_A | 180 | HSP40 protein, heat shock 40 kDa protein, putative | 98.49 | |
| 1c3g_A | 170 | Heat shock protein 40; beta sheets, short helices, | 98.29 | |
| 1exk_A | 79 | DNAJ protein; extended beta-hairpin, CXXCXGXG, zin | 98.19 | |
| 1bq0_A | 103 | DNAJ, HSP40; chaperone, heat shock, protein foldin | 98.14 | |
| 3jvp_A | 572 | Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su | 98.04 | |
| 2ews_A | 287 | Pantothenate kinase; PANK, structural genomics, st | 98.01 | |
| 4am6_A | 655 | Actin-like protein ARP8; nuclear protein, chromati | 97.96 | |
| 3lcz_A | 53 | YCZA, inhibitor of trap, regulated by T-box (Trp) | 97.31 | |
| 2bx9_A | 53 | Anti-trap, AT, tryptophan RNA-binding attenuator p | 96.97 | |
| 3lcz_A | 53 | YCZA, inhibitor of trap, regulated by T-box (Trp) | 96.77 | |
| 3vgl_A | 321 | Glucokinase; ROK family, transferase; HET: BGC ANP | 96.7 | |
| 2ch5_A | 347 | NAGK protein; transferase, N-acetylglucosamine, gl | 96.64 | |
| 3h6e_A | 482 | Carbohydrate kinase, FGGY; novosphingobium aromati | 96.63 | |
| 2ivn_A | 330 | O-sialoglycoprotein endopeptidase; UP1 keops compl | 96.53 | |
| 2bx9_A | 53 | Anti-trap, AT, tryptophan RNA-binding attenuator p | 96.53 | |
| 2e2o_A | 299 | Hexokinase; acetate and sugar kinases, HSP70, acti | 96.48 | |
| 2uyt_A | 489 | Rhamnulokinase; rhamnose degradation, IN-LINE phos | 96.28 | |
| 2i7n_A | 360 | Pantothenate kinase 1; PANK, transferase; HET: ACO | 96.24 | |
| 1t6c_A | 315 | Exopolyphosphatase; alpha/beta protein, actin-like | 96.23 | |
| 2qm1_A | 326 | Glucokinase; alpha-beta structure, putative helix- | 96.22 | |
| 4db3_A | 327 | Glcnac kinase, N-acetyl-D-glucosamine kinase; stru | 96.21 | |
| 3r8e_A | 321 | Hypothetical sugar kinase; ribonuclease H-like mot | 96.03 | |
| 3vov_A | 302 | Glucokinase, hexokinase; ROK, sugar kinase, transf | 96.0 | |
| 2dmx_A | 92 | DNAJ homolog subfamily B member 8; DNAJ J domain, | 95.77 | |
| 4htl_A | 297 | Beta-glucoside kinase; structural genomics, sugar | 95.76 | |
| 2ctr_A | 88 | DNAJ homolog subfamily B member 9; J-domain, chape | 95.72 | |
| 2o37_A | 92 | Protein SIS1; HSP40, J-domain, cochaperone, APC900 | 95.48 | |
| 1hdj_A | 77 | Human HSP40, HDJ-1; molecular chaperone; NMR {Homo | 95.38 | |
| 2lgw_A | 99 | DNAJ homolog subfamily B member 2; J domain, HSJ1A | 95.29 | |
| 3pmq_A | 669 | Decaheme cytochrome C MTRF; greek KEY, C type cyto | 95.19 | |
| 2ap1_A | 327 | Putative regulator protein; zinc binding protein, | 94.49 | |
| 3eno_A | 334 | Putative O-sialoglycoprotein endopeptidase; hydrol | 94.33 | |
| 1z6r_A | 406 | MLC protein; transcriptional repressor, ROK family | 94.26 | |
| 2ej7_A | 82 | HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati | 94.06 | |
| 1zbs_A | 291 | Hypothetical protein PG1100; alpha-beta protein., | 93.95 | |
| 2gup_A | 292 | ROK family protein; sugar kinase, streptococcus pn | 93.75 | |
| 1z05_A | 429 | Transcriptional regulator, ROK family; structural | 93.72 | |
| 2hoe_A | 380 | N-acetylglucosamine kinase; TM1224, structural gen | 93.63 | |
| 3apq_A | 210 | DNAJ homolog subfamily C member 10; thioredoxin fo | 93.42 | |
| 2yua_A | 99 | Williams-beuren syndrome chromosome region 18 prot | 93.37 | |
| 2ctp_A | 78 | DNAJ homolog subfamily B member 12; J-domain, chap | 93.03 | |
| 2yhw_A | 343 | Bifunctional UDP-N-acetylglucosamine 2-epimerase/N | 92.97 | |
| 2dn9_A | 79 | DNAJ homolog subfamily A member 3; J-domain, TID1, | 92.91 | |
| 1sz2_A | 332 | Glucokinase, glucose kinase; ATP-dependent, glucos | 92.9 | |
| 2ctq_A | 112 | DNAJ homolog subfamily C member 12; J-domain, chap | 92.2 | |
| 2cug_A | 88 | Mkiaa0962 protein; DNAJ-like domain, structural ge | 92.18 | |
| 2och_A | 73 | Hypothetical protein DNJ-12; HSP40, J-domain, chap | 91.41 | |
| 2ctw_A | 109 | DNAJ homolog subfamily C member 5; J-domain, chape | 90.98 | |
| 2qsa_A | 109 | DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s | 90.64 | |
| 1zc6_A | 305 | Probable N-acetylglucosamine kinase; NESG, Q7NU07_ | 90.61 | |
| 3mdq_A | 315 | Exopolyphosphatase; structural genomics, joint cen | 88.2 | |
| 2pf4_E | 174 | Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, | 87.46 | |
| 3cet_A | 334 | Conserved archaeal protein; Q6M145, MRR63, NESG, X | 87.28 | |
| 3en9_A | 540 | Glycoprotease, O-sialoglycoprotein endopeptidase/p | 86.93 | |
| 3cer_A | 343 | Possible exopolyphosphatase-like protein; NESG, BL | 84.97 | |
| 1wjz_A | 94 | 1700030A21RIK protein; J-domain, DNAJ like protein | 84.86 | |
| 1u6z_A | 513 | Exopolyphosphatase; alpha/beta protein, askha (ace | 83.68 | |
| 3apo_A | 780 | DNAJ homolog subfamily C member 10; PDI family, th | 82.48 | |
| 3bex_A | 249 | Type III pantothenate kinase; actin-like fold, ATP | 82.18 | |
| 2yhx_A | 457 | Hexokinase B; transferase(phosphoryl,alcohol accep | 80.53 | |
| 3uo3_A | 181 | J-type CO-chaperone JAC1, mitochondrial; structura | 80.4 |
| >4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-91 Score=831.03 Aligned_cols=572 Identities=69% Similarity=1.084 Sum_probs=547.1
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+++||||||||||+||++.++.++++.|..|++.+||+|+|++++++++|..|..+...+|.++++++||+||++++++
T Consensus 1 M~~viGIDlGTT~S~Va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 80 (605)
T 4b9q_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGCTLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp -CCEEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECCEEECTTSCEEESHHHHHTTTTCGGGEECCGGGTTTCBTTSH
T ss_pred CCcEEEEEcCCCcEEEEEEECCEEEEEECCCCCcccceEEEEeCCCcEEecHHHHHHHHhCCCcEehhhHHhhCCCCCCH
Confidence 67799999999999999999999999999999999999999987789999999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
.++...+.+||+++...++.+.+.+.+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++|++.
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~~~~~~~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qr~a~~~Aa~~ 160 (605)
T 4b9q_A 81 EVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 160 (605)
T ss_dssp HHHHHHTTCSSEEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCceEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+.... ..+..+||||+||||+|++++++......+.++++++.++..+||.+||..|++|
T Consensus 161 AGl~v~~li~EP~AAAlaygl~~~-~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~~~~evla~~gd~~lGG~d~D~~l~~~ 239 (605)
T 4b9q_A 161 AGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGAFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239 (605)
T ss_dssp TTCEEEEEEEHHHHHHHHHHTTSC-CSSEEEEEEEECSSCEEEEEEEEEESSSCEEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred cCCceEEEeCcHHHHHHHhhhhcc-CCCCEEEEEECCCCeEEEEEEEEecCCCCceEEEEEecCCCCcChHHHHHHHHHH
Confidence 999999999999999999988764 3578999999999999999999976556689999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|...++.+...+++++.+|+.+||++|+.||......+.++.+..+..++.++.+.+||++|++++.++++++..+
T Consensus 240 l~~~f~~~~~~~~~~~~~~~~~L~~~aE~~K~~Ls~~~~~~i~~~~~~~~~~g~~~~~~~itr~~~e~l~~~~~~~i~~~ 319 (605)
T 4b9q_A 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEP 319 (605)
T ss_dssp HHHHHHHHTCCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEECSSSEEEEEEEEEHHHHHHHHHHHHHHTTHH
T ss_pred HHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHhcCcCCCeEEEEeeeccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988776656678899999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|+.+++...+|+.|+||||+|++|+|+++|++.||.++....||++|||+|||++|+.+++..+++++.|++|++|
T Consensus 320 v~~~L~~a~~~~~~i~~VvLvGG~sriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAai~a~~l~~~~~~~~l~dv~p~sl 399 (605)
T 4b9q_A 320 LKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSL 399 (605)
T ss_dssp HHHHHHHTTCCGGGCSEEEEESGGGGSHHHHHHHHHHHTSCCCSSSCTTTHHHHHHHHHHHHHHTSSCSEEEECBCSSCE
T ss_pred HHHHHHHcCCCHHHCcEEEEeCCccCchHHHHHHHHHhccCcCCCcChhHHHHHhHHHHHHHhcCCCCceEEEeeeeeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
||++.+|.|.+||++|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|+|.++|+|+|++|
T Consensus 400 gie~~~g~~~~ii~rnt~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 479 (605)
T 4b9q_A 400 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479 (605)
T ss_dssp EEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTCCCEEEEEEEC
T ss_pred EEEEcCCEEEEEEeCCCcCCcceEEEeeeecccCceEEEEEEeccccccccCCEeeEEEEeCCCCCcCCCceEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+|+|+|.+..||++.+++|+.+.+||++||++|+++++++..+|+..+++.+++|.+|++++.+++.++ ++.+.+
T Consensus 480 ~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~~~--~~~~~~ 557 (605)
T 4b9q_A 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKCEELVQTRNQGDHLLHSTRKQVE--EAGDKL 557 (605)
T ss_dssp TTSCEEEEEEETTTCCEECCEEESCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGS
T ss_pred CCcEEEEEEEecCCCcEEEEEecCCCCCCHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhC
Confidence 999999999999999999999998889999999999999999999999999999999999999999998886 577889
Q ss_pred ChhHHHHHHHHhccc
Q psy2902 630 SDSEKRIIYDQYGHA 644 (945)
Q Consensus 630 ~~~~k~~~~d~~~~~ 644 (945)
+++++.++.+.+.+.
T Consensus 558 ~~~~~~~~~~~~~~~ 572 (605)
T 4b9q_A 558 PADDKTAIESALTAL 572 (605)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988877653
|
| >2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-88 Score=804.15 Aligned_cols=572 Identities=69% Similarity=1.090 Sum_probs=536.9
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.+|.++++.|+.|++.+||+|+|+.+++++||..|..+...+|.++++++|+++|++++++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~t~~~~Kr~iG~~~~d~ 80 (605)
T 2kho_A 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (605)
T ss_dssp ---CEEEECCSSEEEEEEEETTEEEECCCTTSCSSEECEEEECTTSCEEESHHHHTTTTTCGGGEEECGGGTTTCBSSST
T ss_pred CCCEEEEEcCCcCEEEEEEECCEEEEEECCCCCcccceEEEEECCCcEEECHHHHHHhhhCCCCEeehhhHhhCCCCCcH
Confidence 55689999999999999999999999999999999999999987788999999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
+++.+.+.+||+++...++.+.+.+.+..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++|++.
T Consensus 81 ~v~~~~~~~p~~~~~~~~g~~~i~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~v~~~VitVPa~f~d~qr~a~~~A~~~ 160 (605)
T 2kho_A 81 EVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 160 (605)
T ss_dssp THHHHHHHCSSCEEECTTSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHHHHHT
T ss_pred HHHHHhhcCCeEEEECCCCceEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEECCCCCHHHHHHHHHHHHH
Confidence 99988889999998888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+.... ..+..+||||+||||+|++++++.....++.++++++.++..+||.+||..|++|
T Consensus 161 AGl~v~~li~EP~AAAlay~l~~~-~~~~~vlV~DlGGGT~Dvsi~~~~~~~~~g~~~v~a~~gd~~lGG~d~D~~l~~~ 239 (605)
T 2kho_A 161 AGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239 (605)
T ss_dssp TTCEEEEEEEHHHHHHHHTTTTSS-SSEEEEEEEEECSSCEEEEEEEEECTTTSCEEEEEEEEEESSCSGGGTHHHHHHH
T ss_pred cCCceEEEecCHHHHHHHhhhccc-CCCCEEEEEECCCCeEEEEEEEEEecCCCCeEEEEEECCCCCccHHHHHHHHHHH
Confidence 999999999999999999988763 2578899999999999999999854333688999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|.++++.++..+++++.+|+.+||++|+.||......+.++.+..+..++.++.+.+||++|+++++++++++..+
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~L~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~ 319 (605)
T 2kho_A 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEP 319 (605)
T ss_dssp HHHHHHHHHSCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHTTCCSTTGGGTSH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEecccccCCCCceEEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 99999999998888899999999999999999999998888998877654333457788999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|+.+++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++..+++++.|++|++|
T Consensus 320 i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~fg~~~~~~~npd~aVA~GAa~~a~~l~~~~~~~~l~dv~p~sl 399 (605)
T 2kho_A 320 LKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSL 399 (605)
T ss_dssp HHHHHHTTTCCTTTCSEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHHTTTTTSCCCCCCSBCCCCCE
T ss_pred HHHHHHHcCCChhhCceEEEECCcccChHHHHHHHHhcCCCcCcCCCcchHHHHHHHHHHHHhcCCccCceEEeeeeeec
Confidence 99999999998889999999999999999999999999998888999999999999999999998888999999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
|+++.+|.|.+||++|++||++++.+|++..|+|+.+.|.||+|++..+.+|..||++.|+++|+.|+|.++|+|+|++|
T Consensus 400 gi~~~~g~~~~li~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id 479 (605)
T 2kho_A 400 GIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDID 479 (605)
T ss_dssp EEEETTTEEEEEECTTBCSSEEEEEEECCSSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTCSCEEEEEEEC
T ss_pred cccccCCceEEEEecccccCccceEEEEecCCCceEEEEEEEeccCcccccCcEEeEEEecCCCCCCCCCcEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhcc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVL 629 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l 629 (945)
.||+|+|++.+..||+..+++|+.+.+||++||++|+++++++..+|+..+++.+++|.+|++++.+++.+. ++.+.+
T Consensus 480 ~~gil~v~a~~~~tg~~~~i~i~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~l~--~~~~~~ 557 (605)
T 2kho_A 480 ADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQVE--EAGDKL 557 (605)
T ss_dssp TTSCEEEEEEETTTCCEEEEEECTTSSCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGS
T ss_pred CCCceeEEEEEcCCCceeecccccccCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhccC
Confidence 999999999999999999999998889999999999999999999999999999999999999999999886 477889
Q ss_pred ChhHHHHHHHHhccc
Q psy2902 630 SDSEKRIIYDQYGHA 644 (945)
Q Consensus 630 ~~~~k~~~~d~~~~~ 644 (945)
+++++.++.+.+.+.
T Consensus 558 ~~~~~~~i~~~~~~~ 572 (605)
T 2kho_A 558 PADDKTAIESALTAL 572 (605)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999998887654
|
| >1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-84 Score=765.71 Aligned_cols=541 Identities=53% Similarity=0.839 Sum_probs=505.2
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.++.++++.++.|++.+||+|+|+++ .++||.+|..+...+|.++++++||+||++++++
T Consensus 3 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 81 (554)
T 1yuw_A 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDA 81 (554)
T ss_dssp SCCCEEEEECSSEEEEEEECSSSEEECCCTTSCSEEECCEEECSS-CEEETHHHHTTTTTCGGGEECCGGGTTTCCSSCS
T ss_pred CCCEEEEEeCcccEEEEEEECCEEEEEECCCCCeecceEEEEcCC-cEEEcHHHHHhhhhChhhehHhhHHhcCCCCCcH
Confidence 456899999999999999999999999999999999999999865 7899999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEE--CC--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISV--RG--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKD 225 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 225 (945)
.++...+.+||.++.. ++...+.+ .+ ..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++
T Consensus 82 ~v~~~~~~~p~~v~~~-~g~~~~~v~~~~~~~~~sp~ei~a~~L~~lk~~ae~~lg~~v~~~VitVPa~f~~~qr~a~~~ 160 (554)
T 1yuw_A 82 VVQSDMKHWPFMVVND-AGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKD 160 (554)
T ss_dssp HHHHHHTTCSSEEEEE-TTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEec-CCceEEEEEECCCceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHH
Confidence 9999999999998853 55555554 34 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHH
Q psy2902 226 AGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR 305 (945)
Q Consensus 226 Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~ 305 (945)
|++.|||+++++++||+|||++|+.......+..+||||+||||+|++++++ .++.++++++.++..+||.+||..
T Consensus 161 A~~~AGl~~~~li~EP~AAAlay~~~~~~~~~~~vlV~D~GgGT~Dvsv~~~----~~g~~~v~a~~g~~~lGG~d~d~~ 236 (554)
T 1yuw_A 161 AGTIAGLNVLRIINEPTAAAIAYGLDKKVGAERNVLIFDLGGGTFDVSILTI----AAGIFEVKSTAGDTHLGGEDFDNR 236 (554)
T ss_dssp HHHTTTCEEEEEEEHHHHHHHHTTCSTTCSSCEEEEEEEECSSCEEEEEEEE----ETTEEEEEEEEEETTCSHHHHHHH
T ss_pred HHHHcCCCeEEEeCcHHHHHHHHHhhccCCCCcEEEEEEcCCCeEEEEEEEE----cCCcEEEEEEeCCCCCCHHHHHHH
Confidence 9999999999999999999999988764345789999999999999999998 567899999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHH
Q psy2902 306 IIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITR 385 (945)
Q Consensus 306 l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~ 385 (945)
|++|+.++|.++++.++..+++++.+|+.+||++|+.|+......+.++.+..+ .++...++|++|++++.+++++
T Consensus 237 l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~i~~~~~g----~~~~~~ltr~~~e~l~~~~~~~ 312 (554)
T 1yuw_A 237 MVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARFEELNADLFRG 312 (554)
T ss_dssp HHHHHHHHHHHHTSCCTTSCHHHHHHHHHHHHHHHHHHTTSSEEEEEETTCSSS----CCEEEEEEHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHhhhcccCceEEEEEeeccCC----ceEEEEEEHHHHHHHHHHHHHH
Confidence 999999999999988888899999999999999999999998888888765443 2678999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhC-CCCCCCCCCCchhhhhHHHhhhhccCC----CCceE
Q psy2902 386 TIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFG-KDPRRDINPDEAVAVGAAIQGSVLSGD----RKDLL 460 (945)
Q Consensus 386 i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg-~~~~~~~~p~~avA~GAa~~a~~~~~~----~~~~~ 460 (945)
+...+.++|+.+++...+|+.|+||||+|++|+|++.|++.|+ .++....||++|||+|||++|+.+++. .++++
T Consensus 313 i~~~i~~~L~~a~~~~~~i~~VvLvGG~srip~v~~~l~~~f~~~~v~~~~np~~aVA~Gaa~~a~~l~~~~~~~~~~~~ 392 (554)
T 1yuw_A 313 TLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLL 392 (554)
T ss_dssp TTHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCCSCTTTHHHHHHHHHHHHTTSCCCCCTTSSC
T ss_pred HHHHHHHHHHHcCCChhhCcEEEEECCcccChHHHHHHHHHcCCCccccCCCchhHHHHHHHHHHHHhcCCccccccceE
Confidence 9999999999999988899999999999999999999999995 777888999999999999999998874 57889
Q ss_pred EEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcC
Q psy2902 461 LLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIP 540 (945)
Q Consensus 461 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~ 540 (945)
+.|++|++|||++.+|.+.+||++|++||++++++|++..|+|+.+.|.||+|++....+|..||++.|+++|+.|.|.+
T Consensus 393 ~~dv~p~slgi~~~~g~~~~li~r~t~iP~~~~~~f~~~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~ 472 (554)
T 1yuw_A 393 LLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVP 472 (554)
T ss_dssp CCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECCCCCSTTCC
T ss_pred EEEeeeeEEEEEecCceEEEEEECCCccCceeEEEeeeccCCCceEEEEEEecCccccccCcEEEEEEEeCCCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccch
Q psy2902 541 QIEVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKS 619 (945)
Q Consensus 541 ~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~ 619 (945)
+|+|+|++|.||+|+|++.+..+|+..+++|+.+ ..||++||++++++++++..+|+..+++.+++|.+|+++|++++.
T Consensus 473 ~i~v~f~id~~gil~v~a~~~~tg~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~n~~e~~~~~~~~~ 552 (554)
T 1yuw_A 473 QIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLESYAFNMKAT 552 (554)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECSSCCSCSCCC
T ss_pred EEEEEEEEccCceEEEEEEeccCCCceeEEEecCCCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999876 469999999999999999999999999999999999999998876
Q ss_pred h
Q psy2902 620 L 620 (945)
Q Consensus 620 ~ 620 (945)
+
T Consensus 553 l 553 (554)
T 1yuw_A 553 V 553 (554)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-84 Score=775.16 Aligned_cols=561 Identities=26% Similarity=0.430 Sum_probs=515.6
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.++.++++.|..|++.+||+|+|+++ +++||..|..+...+|.++++++||+||+.++++
T Consensus 1 Mm~~iGIDlGTtns~va~~~~g~~~ii~n~~g~r~tPS~Vaf~~~-~~~vG~~A~~~~~~~p~~ti~~~KrllG~~~~d~ 79 (675)
T 3d2f_A 1 MSTPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPK-NRYLGETGKNKQTSNIKNTVANLKRIIGLDYHHP 79 (675)
T ss_dssp -CCCEEEECCSSEEEEEEEETTEEEEECCTTSCSSEECCEEECSS-SEEETHHHHHHHTTCGGGEECCHHHHTTCBTTCT
T ss_pred CCcEEEEEcCCCcEEEEEEECCeeEEEECCCCCcccceEEEECCC-cEEecHHHHHhhhhChHhHHHHHHHHhCCCCCcH
Confidence 566899999999999999999999999999999999999999764 7899999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEEC--C--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVR--G--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKD 225 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~ 225 (945)
.++.+.+++||+++...++.+.+.+. + ..++|+++++++|++|++.|+.+++..+.++|||||++|++.||+++++
T Consensus 80 ~v~~~~~~~p~~v~~~~~g~~~~~~~~~g~~~~~speei~a~~L~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~ 159 (675)
T 3d2f_A 80 DFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIAD 159 (675)
T ss_dssp THHHHHTTCCSEEEECTTSBEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHCSCCCEEEEEECTTCCHHHHHHHHH
T ss_pred HHHHHHhhCCeeEEEcCCCceEEEEEeCCCCceEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 99999999999999887888777653 4 5799999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCccceecchhHHHHHHhccCCC-C----CCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchH
Q psy2902 226 AGRIAGLEVKRIINEPTAAALAFGLDKS-G----KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300 (945)
Q Consensus 226 Aa~~AGl~~v~li~Ep~AAAl~~~~~~~-~----~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~ 300 (945)
|++.|||+++++++||+|||++|+.... . ..+..+||||+||||+|++++++ .++.++++++.++..+||.
T Consensus 160 Aa~~AGl~~~~li~EP~AAAlaygl~~~~~~~~~~~~~~vlV~DlGGGT~Dvsv~~~----~~g~~~V~a~~gd~~lGG~ 235 (675)
T 3d2f_A 160 AARIAGLNPVRIVNDVTAAGVSYGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAF----KKGQLKVLGTACDKHFGGR 235 (675)
T ss_dssp HHHHTTCEEEEEEEHHHHHHHHHHHHCSCCCCSSSCCEEEEEEEECSSCEEEEEEEE----ETTEEEEEEEEEETTCSHH
T ss_pred HHHHcCCceEEEEcchHHHHHHHhhhccccccccCCCcEEEEEEcCCCcEEEEEEEe----cCCeEEEEEEcCCCCccHH
Confidence 9999999999999999999999987542 1 35688999999999999999998 5678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHH
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVD 380 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~ 380 (945)
+||..|++|+.++|.++++.++..+++++.+|+.+||++|+.||....+.+.++.+..+. ++.+.|||++|++++.
T Consensus 236 d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~rL~~~aE~aK~~Ls~~~~~~i~i~~~~~g~----~~~~~itr~~fe~l~~ 311 (675)
T 3d2f_A 236 DFDLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDV----DVSSQLSREELEELVK 311 (675)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCGGGCHHHHHHHHHHHHHHHHHHHHCSEEEEEETTSSSSC----CEEEEEEHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHhcCcCCceEEEEeeeccCc----eEEEEEeHHHHHHHHH
Confidence 999999999999999999999889999999999999999999999888888887654432 7789999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCC--CCc
Q psy2902 381 ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGD--RKD 458 (945)
Q Consensus 381 ~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~--~~~ 458 (945)
++++++..++.++|+.+++...+|+.|+||||+|++|+|++.|++.||.++....||++|||+|||++|+.+++. .++
T Consensus 312 ~l~~~i~~~i~~~L~~a~l~~~~I~~VvLvGGssriP~v~~~l~~~fg~~~~~~~nPdeaVA~GAa~~a~~ls~~~~v~~ 391 (675)
T 3d2f_A 312 PLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRP 391 (675)
T ss_dssp HHHTTTTHHHHHHHHHHTCCGGGCCEEEEESGGGGSHHHHHHHHHHHTSCEECCSCTTTHHHHHHHHHHHHTCSSCCCCC
T ss_pred HHHHHHHHHHHHHHHHhCCChhhCcEEEEECCCccChHHHHHHHHhcCCCccccCCcchHHHHHHHHHHHHhCCCCcccc
Confidence 999999999999999999998899999999999999999999999999888889999999999999999999984 678
Q ss_pred eEEEeeccceeeEEEeCC----EEEEEEecCCCccceeEEEeeecCCCCceEEEEE-EecCccccc-CCceEEEEEEcCC
Q psy2902 459 LLLLDVTPLSLGIETMGG----IMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKV-YQGEREMVS-GNKILGEFNLEGI 532 (945)
Q Consensus 459 ~~~~~~~~~s~gi~~~~~----~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~i-y~g~~~~~~-~~~~lg~~~i~~~ 532 (945)
+.+.|++|++|||++.++ .+.+||++|++||++++.+|++..+++ +.+ |+|++.++. +|..||+|.|.++
T Consensus 392 ~~l~Dv~p~slgi~~~~~~~~~~~~~li~rnt~iP~~k~~~f~~~~~~~----~~~~~~ge~~~~~~~n~~lg~f~l~gi 467 (675)
T 3d2f_A 392 FKFEDIHPYSVSYSWDKQVEDEDHMEVFPAGSSFPSTKLITLNRTGDFS----MAASYTDITQLPPNTPEQIANWEITGV 467 (675)
T ss_dssp CEEEEEECSCEEEEECCTTCSCSEEEEECTTEEESEEEEEEEEESSCEE----EEEEESCGGGSCTTCCSEEEEEEEECC
T ss_pred eEEEeeeecceEeeecCCCCCcceEEEEcCCCCCCcccceeeeecCCce----EEEEEcCCcccccccCceeeEEEecCc
Confidence 999999999999999877 499999999999999999999876643 444 779988887 9999999999999
Q ss_pred CCCCCCcC-eEEEEEEECCCccEEEEEe----------ecCCCceeEEEeccCC-CCcHHHHHHHHHHHHHhHHHHHHHH
Q psy2902 533 PPALRGIP-QIEVTFDIDANGILHVTAK----------DKKTGKENKITIKANS-GLTEEEIKKMVQSAEANAEEDKRLR 600 (945)
Q Consensus 533 ~~~~~~~~-~i~v~~~~d~~g~l~v~a~----------~~~~g~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~~~d~~~~ 600 (945)
|+.+.|.+ +|+|+|++|.||+|+|++. ++.+|++..++|+.+. +||++||++|+++++++..+|+..+
T Consensus 468 ~~~~~g~~~~i~v~f~id~~Gil~V~a~~~~~~~~~~~~~~t~~~~~i~i~~~~~~ls~~ei~~~~~~~~~~~~~D~~~~ 547 (675)
T 3d2f_A 468 QLPEGQDSVPVKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKENEMLAQDKLVA 547 (675)
T ss_dssp CCCSSCSCEEEEEEEEECTTSCEEEEEEEEECC------CCCCEEEECEEEEECSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcceEEEEEEEcCCCcEEEEEEEEeecccccccccCcceeeEEEecCCCCCCHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999985 8999999999999999995 7889999999998754 8999999999999999999999999
Q ss_pred HHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 601 ELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 601 ~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
++.+++|.+|+++|++++.+. +++.+.++++++.++.+.+.+.
T Consensus 548 ~~~~~~n~le~~i~~~~~~l~-~~~~~~~~~~~~~~~~~~l~~~ 590 (675)
T 3d2f_A 548 ETEDRKNTLEEYIYTLRGKLE-EEYAPFASDAEKTKLQGMLNKA 590 (675)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TTTGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhCCHHHHHHHHHHHHHH
Confidence 999999999999999999997 3577899999999999888754
|
| >2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-79 Score=718.32 Aligned_cols=509 Identities=62% Similarity=0.978 Sum_probs=472.9
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.++.++++.++.|++.+||+|+| .+++++||.+|..+...+| ++++++|+++|+++.
T Consensus 1 m~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~~-~~~~~~vG~~A~~~~~~~p-~~~~~~Kr~lg~p~~-- 76 (509)
T 2v7y_A 1 MSKIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAF-KNGERLVGEVAKRQAITNP-NTIISIKRHMGTDYK-- 76 (509)
T ss_dssp CCCEEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECEEEE-SSSSEEESHHHHTTTTTCS-SEEECGGGTTTSCCC--
T ss_pred CCCEEEEEcCCceEEEEEEECCEEEEEECCCCCcccceEEEE-CCCcEEECHHHHHhHHhCC-CcHHHHHHhcCCCcE--
Confidence 566899999999999999999999999999999999999999 4668999999999988999 999999999997322
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
+.++|..++|+++++++|++|+..++.+++..+.++|||||++|++.||+++++|++.
T Consensus 77 ----------------------~~~~g~~~~~~ei~a~~L~~l~~~ae~~l~~~~~~~VitvPa~~~~~qr~a~~~a~~~ 134 (509)
T 2v7y_A 77 ----------------------VEIEGKQYTPQEISAIILQYLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRI 134 (509)
T ss_dssp ----------------------EEETTEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred ----------------------EEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 2346677899999999999999999999999999999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
|||+++++++||+|||++|+... ..+..+||||+||||+|++++++ .++.++++++.++..+||.+||+.|++|
T Consensus 135 AGl~~~~li~Ep~AAAlay~~~~--~~~~~vlV~D~GgGT~Dvsv~~~----~~g~~~v~a~~g~~~lGG~d~d~~l~~~ 208 (509)
T 2v7y_A 135 AGLEVERIINEPTAAALAYGLDK--EEDQTILVYDLGGGTFDVSILEL----GDGVFEVKATAGDNHLGGDDFDQVIIDY 208 (509)
T ss_dssp TTCEEEEEEEHHHHHHHHTTGGG--SCSEEEEEEEECSSCEEEEEEEE----ETTEEEEEEEEEETTCSHHHHHHHHHHH
T ss_pred cCCCeEEEecCHHHHHHHHhhcc--CCCCEEEEEECCCCeEEEEEEEE----cCCeEEEEEecCCCCcCHHHHHHHHHHH
Confidence 99999999999999999998876 46789999999999999999998 5578899999999999999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|.++++.++..+++.+.+|+.+||++|+.|+......+.++.+..+..++.++.+.++|++|+++++|+++++..+
T Consensus 209 l~~~~~~~~~~~~~~~~~~~~~l~~~aE~~K~~ls~~~~~~i~l~~~~~~~~G~~~~~~~itr~~fe~l~~~~~~~i~~~ 288 (509)
T 2v7y_A 209 LVNQFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELSAHLVERTMGP 288 (509)
T ss_dssp HHHHHHHHHSCCGGGCHHHHHHHHHHHHHHHHHTTTCSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHTHHHHHTTHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCCCCCeeEEEEEEHHHHHHHHHHHHHHHHHH
Confidence 99999998888888889999999999999999999998888888877654333456788999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCceEEEeecccee
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKDLLLLDVTPLSL 469 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~~~~~~~~~~s~ 469 (945)
+.++|+.+++...+|+.|+|+||+|++|+|++.|++.|+.++....||++|||+|||++|+.+++..+++++.|++|++|
T Consensus 289 i~~~L~~a~~~~~~i~~VvLvGG~s~~p~v~~~l~~~f~~~~~~~~~p~~aVa~Gaa~~a~~l~~~~~~~~~~dv~p~sl 368 (509)
T 2v7y_A 289 VRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSL 368 (509)
T ss_dssp HHHHHHHHTCCGGGCSEEEEESGGGGCHHHHHHHHHHHSSCCBCCSCTTTHHHHHHHHHHHHHHTCCCCCCCCCBCSSEE
T ss_pred HHHHHHHcCCChhHCcEEEEECCcccChHHHHHHHHHhCCCcCcCCCchhhhHhhHHHHHHHhcCCccCceEEEeecccc
Confidence 99999999998889999999999999999999999999988888999999999999999999998888899999999999
Q ss_pred eEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCeEEEEEEEC
Q psy2902 470 GIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDID 549 (945)
Q Consensus 470 gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~i~v~~~~d 549 (945)
|+++.++.+.+||++|++||++++.+|++..|+|+.+.|.||+|++....+|..||++.|+++|+.++|.++|+|+|++|
T Consensus 369 gi~~~~~~~~~li~~~~~iP~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~l~~i~~~~~g~~~i~v~f~id 448 (509)
T 2v7y_A 369 GIETMGGVFTKLIERNTTIPTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDID 448 (509)
T ss_dssp EEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCEEEEEEEEESSSBGGGSEEEEEEEEECCCCCCTTCSCEEEEEEEC
T ss_pred ceeecCCceEEEEeCCCcCCcceEEEEEeeccCcEEEEEEEEecCccccccCcEEEEEEEeCCCCCCCcccEEEEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCc
Q psy2902 550 ANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610 (945)
Q Consensus 550 ~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e 610 (945)
.||+|+|++.+..+|++.+++|+.+.+||++||++++++++++..+|+..+++.+++|.+|
T Consensus 449 ~~gil~v~a~~~~~g~~~~~~i~~~~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~e 509 (509)
T 2v7y_A 449 ANGIVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509 (509)
T ss_dssp TTSCEEEEEEETTTCCEEEEEECSSCSCCSHHHHHHHHHHHHSCGGGGGGGGCCCC-----
T ss_pred CCceEEEEEEEcCCCcEEEEEEEecCCCCHHHHHHHHHHHHHhhhccHHHHHHHHHHhhcC
Confidence 9999999999999999999999988899999999999999999999999999999998875
|
| >3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=512.88 Aligned_cols=385 Identities=50% Similarity=0.808 Sum_probs=345.6
Q ss_pred ccchhhcccccccCCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhH
Q psy2902 57 DEDLKRILHARRIMSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIY 136 (945)
Q Consensus 57 ~~~~~~~~~~~~~m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~ 136 (945)
|++.+.++... +.+||||||||||+||++.++.++++.++.|++.+||+|+|+++ .++||..|..+...+|.++++
T Consensus 12 ~~~~~~l~~~~---~~viGID~GTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~-~~~vG~~A~~~~~~~~~~~~~ 87 (404)
T 3i33_A 12 DLGTENLYFQS---MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPTNTIF 87 (404)
T ss_dssp --------------CCCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECSS-CEEETHHHHHTTTTCSTTEEC
T ss_pred ccCcccchhcc---CCEEEEEcCCccEEEEEEECCeeEEEECCCCCcccceEEEECCC-CEEecHHHHHhhHhChhhhHH
Confidence 44444555443 33899999999999999999999999999999999999999865 789999999999999999999
Q ss_pred HHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEE--CC--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcC
Q psy2902 137 AAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISV--RG--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVP 212 (945)
Q Consensus 137 ~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVP 212 (945)
++|+++|++++++.++...+.+||.++. .++...+.+ .+ ..++|+++++++|++|++.++.+++..+.++|||||
T Consensus 88 ~~Kr~lg~~~~~~~~~~~~~~~p~~~~~-~~g~~~~~v~~~~~~~~~~~~ei~a~~L~~l~~~a~~~~~~~~~~~vitvP 166 (404)
T 3i33_A 88 DAKRLIGRKFEDATVQSDMKHWPFRVVS-EGGKPKVQVEYKGETKTFFPEEISSMVLTKMKEIAEAYLGGKVHSAVITVP 166 (404)
T ss_dssp CGGGTTTCCTTSHHHHHHHTTCSSEEEE-ETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEEEEC
T ss_pred HHHHHhCCCCCcHHHHHHHhhCCceEEc-cCCceEEEEEeCCCceEEcHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEC
Confidence 9999999999999999999999999886 444454444 45 689999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCC--CCceEEEEEeCCcceEEEEEEEEeecCCceEEEEE
Q psy2902 213 AYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGK--SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLS 290 (945)
Q Consensus 213 a~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~--~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~ 290 (945)
++|++.||++|++|++.|||+++.+++||+|||++|+...... .+..++|||+||||+|++++++ .++.+++++
T Consensus 167 a~~~~~~r~~~~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~~vlV~D~GgGT~dvsv~~~----~~~~~~v~~ 242 (404)
T 3i33_A 167 AYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTI----EDGIFEVKS 242 (404)
T ss_dssp TTCCHHHHHHHHHHHHHHTCEEEEEEEHHHHHHHHTTTTSSCSSSSCCEEEEEEECSSCEEEEEEEE----ETTEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHcCCCeEEEeccHHHHHHHHHhhcccccCCCceEEEEECCCCcEEEEEEEE----eCCeEEEEE
Confidence 9999999999999999999999999999999999998876422 6789999999999999999998 567899999
Q ss_pred ecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEE
Q psy2902 291 TNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKI 370 (945)
Q Consensus 291 ~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~i 370 (945)
..++..+||.+||+.|++++.++|..+++.++..+++.+.+|+.+||++|+.|+......+.++.+..+ .++.+.+
T Consensus 243 ~~~~~~lGG~~~d~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~~~~~~~~~g----~~~~~~i 318 (404)
T 3i33_A 243 TAGDTHLGGEDFDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----VDFYTSI 318 (404)
T ss_dssp EEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEETT----EEEEEEE
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHHHHhCCcCcceEEEEeeccCC----ceeEEEE
Confidence 999999999999999999999999999998888899999999999999999999999888888766544 3788999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh-CCCCCCCCCCCchhhhhHHHhh
Q psy2902 371 TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-GKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 371 tr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f-g~~~~~~~~p~~avA~GAa~~a 449 (945)
+|++|++++.++++++.+.+.++|+.+++...+|+.|+|+||+|++|+|++.|++.| +.++....||++|||.|||++|
T Consensus 319 ~r~~~~~~~~~~~~~i~~~i~~~l~~~~~~~~~i~~VvLvGG~s~~p~l~~~l~~~~~~~~v~~~~~p~~ava~Gaa~~a 398 (404)
T 3i33_A 319 TRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQA 398 (404)
T ss_dssp EHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGGCHHHHHHHHHHTTTCCCBCSSCTTTHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhhCCEEEEECCccccHHHHHHHHHHcCCCCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999999999998889999999999999999999999999 7888889999999999999999
Q ss_pred hhccC
Q psy2902 450 SVLSG 454 (945)
Q Consensus 450 ~~~~~ 454 (945)
+.+++
T Consensus 399 ~~l~~ 403 (404)
T 3i33_A 399 AILIG 403 (404)
T ss_dssp HHHC-
T ss_pred HHhcC
Confidence 98875
|
| >1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=507.26 Aligned_cols=383 Identities=71% Similarity=1.150 Sum_probs=347.4
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
|+.+||||||||||+||++.++.++++.++.|.+.+||+|+|+.+++++||.+|......+|.++++++|++||+.++++
T Consensus 1 m~~~vGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~~lg~~~~~~ 80 (383)
T 1dkg_D 1 MGKIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDE 80 (383)
T ss_dssp --CCCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSH
T ss_pred CCcEEEEEcCCCCEEEEEEECCeeEEEECCCCCcccceEEEEECCCCEEECHHHHHhhhhCccceeehhHHhhCCCCCcH
Confidence 56689999999999999999999999999999999999999987778999999999999999999999999999999999
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRI 229 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~ 229 (945)
+++...+.+||.++...++...+.+++..++|+++++++|+++++.++.+++..+.++|||||++|++.||+++++|++.
T Consensus 81 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~i~~~~L~~l~~~a~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~~~ 160 (383)
T 1dkg_D 81 EVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI 160 (383)
T ss_dssp HHHHHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCeEEEEcCCCcEEEEECCEEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHH
Confidence 99988889999998888888888888889999999999999999999999988899999999999999999999999999
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDY 309 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~ 309 (945)
||++++.+++||+|||++|+.... ..+..+||||+||||+|+++++.....+++.++++++.++..+||.+||+.|+++
T Consensus 161 aGl~~~~li~Ep~Aaa~~~~~~~~-~~~~~~lVvD~Gggttdvsv~~~~~~~~~~~~~v~~~~~~~~lGG~~id~~l~~~ 239 (383)
T 1dkg_D 161 AGLEVKRIINEPTAAALAYGLDKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINY 239 (383)
T ss_dssp TTCEESCCCBHHHHHHHHHTCCC--CCEEEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHH
T ss_pred cCCceEEEeccHHHHHHHHHhccC-CCCcEEEEEEcCCCeEEEEEEEEEecCCCCeEEEEEEeCCCCCCHHHHHHHHHHH
Confidence 999999999999999999987653 3568899999999999999999854333567888888888899999999999999
Q ss_pred HHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHH
Q psy2902 310 ILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEP 389 (945)
Q Consensus 310 l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~ 389 (945)
+.++|..+++.++..++..+.+|+.+||++|+.|+......+.++.+.....++.++.+.++|++|++++++.++++.+.
T Consensus 240 l~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~~~G~~~~~~~it~~~~~~~~~~~~~~i~~~ 319 (383)
T 1dkg_D 240 LVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEL 319 (383)
T ss_dssp HHHHHHHHHCCCSTTCHHHHHHHHHHHHHHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEecccccCCCCeeEEEEEeHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888999999999999999999988888888766543222346678999999999999999999999
Q ss_pred HHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 390 CRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 390 i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
+.++|+.+++...+++.|+|+||+|++|++++.|++.|+.++....||++|||+|||++|+.++
T Consensus 320 i~~~l~~~~~~~~~i~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~l~ 383 (383)
T 1dkg_D 320 LKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 383 (383)
T ss_dssp HHHHHHTTTCCTTTCCEEEEESGGGGSHHHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHcCCCHhhCCEEEEecCccccHHHHHHHHHHhCCCCCCCcChHHHHHHHHHHHHHhhC
Confidence 9999999998888999999999999999999999999998888899999999999999998764
|
| >4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=496.79 Aligned_cols=370 Identities=29% Similarity=0.471 Sum_probs=331.3
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
.+||||||||+|+||++.++.++++.++.|.+.+||+|+|.+ +.++||.+|..+...+|.++++++|+++|++++++.+
T Consensus 14 ~vvGIDlGTt~s~va~~~~g~~~ii~~~~g~~~~PS~v~~~~-~~~~~G~~A~~~~~~~~~~~i~~~K~llg~~~~~~~~ 92 (409)
T 4gni_A 14 VVIGITFGNSNSSIAHTVDDKAEVIANEDGDRQIPTILSYVD-GDEYYGQQAKNFLVRNPKNTVAYFRDILGQDFKSVDP 92 (409)
T ss_dssp CEEEEEECSSEEEEEEEETTEEEEECCTTSCSSEECEEEEET-TEEEEHHHHHHHHHHCGGGEEESCGGGTTCCGGGCCC
T ss_pred cEEEEEcCCCeEEEEEEeCCceEEEECCCCCccCceEEEECC-CcEEEcHHHHHhhHhChHhhHHHHHHHhCCCccchhh
Confidence 389999999999999998899999999999999999999974 5889999999999999999999999999999887655
Q ss_pred HhhhcCCCeeEEecCCCceEEEECC--------eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHH
Q psy2902 152 QKDISLMPYKIVKADNGDAWISVRG--------KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQAT 223 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l 223 (945)
.... +++.+. ..++.+.+.+.. ..++++++++++|++|++.++.+++..+.++|||||++|++.||++|
T Consensus 93 ~~~~--~~~~~~-~~~g~~~~~v~~~~~~~~~~~~~~~~ev~~~~L~~l~~~a~~~~~~~~~~~vitvPa~~~~~~r~~~ 169 (409)
T 4gni_A 93 THNH--ASAHPQ-EAGDNVVFTIKDKAEEDAEPSTLTVSEIATRYLRRLVGAASEYLGKKVTSAVITIPTNFTEKQKAAL 169 (409)
T ss_dssp GGGT--TSCCCE-EETTEEEEEECCSSCSSCCCEEEEHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHH
T ss_pred hhhc--ccccee-cCCCcEEEEEecCCCCCCcceEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHH
Confidence 4432 333332 345566666543 58999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCccceecchhHHHHHHhccCC-CCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHH
Q psy2902 224 KDAGRIAGLEVKRIINEPTAAALAFGLDK-SGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDF 302 (945)
Q Consensus 224 ~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~-~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~i 302 (945)
++|++.|||+++.+++||+|||++|+... ....+..+||||+||||+|++++++ .++.++++++.++..+||.+|
T Consensus 170 ~~a~~~AGl~~~~li~Ep~AAa~~~~~~~~~~~~~~~vlv~D~GgGT~dvsv~~~----~~~~~~v~~~~~~~~lGG~~~ 245 (409)
T 4gni_A 170 IAAAAAADLEVLQLISEPAAAVLAYDARPEATISDKIIVVADLGGSRSDVTVLAS----RSGMYTILATVHDYEYHGIAL 245 (409)
T ss_dssp HHHHHHTTCEEEEEEEHHHHHHHHTTC------CCEEEEEEEECSSCEEEEEEEE----ETTEEEEEEEEEESSSSHHHH
T ss_pred HHHHHHcCCCeEEEEcCHHHHHHHHhcccccCCCCCEEEEEECCCCceEEEEEEE----eCCeEEEEEecCCCCcCHHHH
Confidence 99999999999999999999999998764 2356889999999999999999998 567899999999999999999
Q ss_pred HHHHHHHHHHHHHHHhC--CCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHH
Q psy2902 303 DQRIIDYILDEFNKING--IDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVD 380 (945)
Q Consensus 303 D~~l~~~l~~~~~~~~~--~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~ 380 (945)
|..|++++.++|...++ .+...+.+.+.+|+.+||++|+.|+......+.++.+..+ .++.+.+||++|+++++
T Consensus 246 d~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ae~~K~~ls~~~~~~i~i~~~~~~----~~~~~~itr~~~~~~~~ 321 (409)
T 4gni_A 246 DKVLIDHFSKEFLKKNPGAKDPRENPRSLAKLRLEAESTKRALSRSTNASFSVESLIDG----LDFASTINRLRYETIAR 321 (409)
T ss_dssp HHHHHHHHHHHHHHHSTTCCCGGGSHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEETT----EEEEEEEEHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHhCCCCCcccCHHHHHHHHHHHHHHHHhCCCCCceEEEeecccCC----cceEEEeeHHHHHHHHH
Confidence 99999999999998888 7788899999999999999999999999988888876544 37899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCC--------CCCCCCCchhhhhHHHhhhhc
Q psy2902 381 ELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDP--------RRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 381 ~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~--------~~~~~p~~avA~GAa~~a~~~ 452 (945)
++++++..+|.++|+.+++...+|+.|+|+||+|++|+|++.|++.|+.++ ....||++|||+|||++|+..
T Consensus 322 ~~~~~i~~~i~~~l~~~~~~~~~i~~V~LvGG~s~~p~v~~~l~~~f~~~~~v~~P~~~~~~~~p~~ava~GAa~~~~~~ 401 (409)
T 4gni_A 322 TVFEGFNRLVESAVKKAGLDPLDVDEVIMSGGTSNTPRIAANFRYIFPESTRILAPSTDPSALNPSELQARGAALQASLI 401 (409)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGCCEEEEESGGGGCHHHHHHHHHHSCTTSEEESTTTCTTCCCTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccccHHHHHHHHHHcCCccccccccccCCCcCHHHHHHHHHHHHhhhh
Confidence 999999999999999999988899999999999999999999999998763 567899999999999999865
Q ss_pred c
Q psy2902 453 S 453 (945)
Q Consensus 453 ~ 453 (945)
.
T Consensus 402 ~ 402 (409)
T 4gni_A 402 Q 402 (409)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=404.10 Aligned_cols=230 Identities=31% Similarity=0.528 Sum_probs=202.4
Q ss_pred CCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEe--ece--eeeeecCCCC
Q psy2902 686 GSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ--QGF--FSIQQTCPKC 761 (945)
Q Consensus 686 ~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~--~~~--~~~~~~C~~C 761 (945)
+.++.|++++|+++|+++|+|.++.+.+.+...|+.|+|+|..... ..+|+.|+|+|++... .|+ ++++.+|+.|
T Consensus 8 ~~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C 86 (248)
T 1nlt_A 8 PQRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVC 86 (248)
T ss_dssp CCBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTC
T ss_pred CCCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCC-CccCCCCCCCcEEEEEEecCceEEEEEEcCCCC
Confidence 3468899999999999999999999999999999999999999887 4899999999986432 232 3678899999
Q ss_pred CCceEEe--ecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCce
Q psy2902 762 QGAGKVI--PHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLH 839 (945)
Q Consensus 762 ~G~g~~~--~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~ 839 (945)
+|.|.++ .++|..|.|.|.+.+.++++|+||+|+++|++|+|+|+|++.++ +.+|||||+|++++|+.|+|+|+|||
T Consensus 87 ~G~G~~i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~-g~~GDl~v~i~v~~h~~F~R~G~DL~ 165 (248)
T 1nlt_A 87 HGTGDIIDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPD-VIPGDVVFIVSERPHKSFKRDGDDLV 165 (248)
T ss_dssp SSSSSCCCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTT-CBCCCEEEEEEECCCSSCEEETTEEE
T ss_pred CCcCEEeccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCC-CCcceEEEEEEEecCccceeeCCEEE
Confidence 9999999 89999999999999999999999999999999999999999754 58999999999999999999999999
Q ss_pred eEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCC--CCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCCC--CCHHHHH
Q psy2902 840 YEMPISFSTAALGGEIEAPTLNGK-AFFVIPEG--TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQ--LTEYQKK 914 (945)
Q Consensus 840 ~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~--~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~--l~~~~~~ 914 (945)
++++|+|.||++|++++|+||||+ +.+.||++ ++||+++||+|+|||..++..+|||||+|+|.||+. ||++|++
T Consensus 166 ~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~q~~ 245 (248)
T 1nlt_A 166 YEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEENLK 245 (248)
T ss_dssp EEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC----------
T ss_pred EEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHHHHH
Confidence 999999999999999999999995 78889998 999999999999999865446899999999999999 9999999
Q ss_pred HHH
Q psy2902 915 LLR 917 (945)
Q Consensus 915 ~~~ 917 (945)
+|+
T Consensus 246 ~l~ 248 (248)
T 1nlt_A 246 KLE 248 (248)
T ss_dssp ---
T ss_pred hhC
Confidence 875
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=386.16 Aligned_cols=282 Identities=30% Similarity=0.503 Sum_probs=163.9
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCC--
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGS-- 653 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~-- 653 (945)
..|.+||.+..+++....++|+.... .+..+|.++++||++|+|+++|+.||.++..+..++.+++
T Consensus 39 ~as~~eIk~aYr~la~~~HPDk~~~~------------~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~~~~~~~~~ 106 (329)
T 3lz8_A 39 TDDLKTIKTAYRRLARKYHPDVSKEN------------DAEAKFKDLAEAWEVLKDEQRRAEYDQLWQHRNDPGFGRQRQ 106 (329)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCCCh------------HHHHHHHHHHHHHHHhhhhhhhcccchhhccccCCCcccccc
Confidence 35788999999999999999974321 2345788889999999999999999998443211111110
Q ss_pred --CcccccccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCc
Q psy2902 654 --SASAEASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT 731 (945)
Q Consensus 654 --~~~~~~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~ 731 (945)
++++.+.+|+|+|++|||++.+ + ++.+++.+|.|+.++|+++|++++.|+++.+.+.+...|
T Consensus 107 ~~~~~f~~~~f~diF~~~Fg~~g~-~---~~~~~~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~------------ 170 (329)
T 3lz8_A 107 THEQSYSQQDFDDIFSSMFGQQAH-Q---RRRQHAARGHDLEIEVAVFLEETLAEQTRTISYNLPVYN------------ 170 (329)
T ss_dssp ----------------------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECC------------
T ss_pred cccCCcCCCchhhhhHhhhcCcCC-C---CCCCCcCCCCCEEEEEecchhhhhhccceEEEEEEEeec------------
Confidence 1111223567777777764311 1 112235678999999999999999999999988754321
Q ss_pred CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCC
Q psy2902 732 SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGL 811 (945)
Q Consensus 732 ~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~ 811 (945)
|.|.+ .+.+.++++|+||+|+++|++|+|+|+|++.+
T Consensus 171 ---------g~G~v----------------------------------~~~~~~~l~V~IP~Gv~~G~~Irl~G~G~~g~ 207 (329)
T 3lz8_A 171 ---------VFGMI----------------------------------ESETPKTLNVKIPAGVVDGQRIRLKGQGTPGE 207 (329)
T ss_dssp ---------SCC-C----------------------------------CEEEEEEEEEEECTTCCTTCEEEESSCSCCC-
T ss_pred ---------CCeEE----------------------------------EEecceEEEEeCCCCCCCCCEEEEcccccCCC
Confidence 22222 12235689999999999999999999999988
Q ss_pred CCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCC
Q psy2902 812 NGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSS 891 (945)
Q Consensus 812 ~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~ 891 (945)
+++.+|||||+|++++|+.|+|+|+||+++++|+++||++|++++|+||||++.+.||++++||+++||+|+|||.. +
T Consensus 208 ~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ip~gt~~g~~~rl~G~GmP~~--~ 285 (329)
T 3lz8_A 208 NGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVSK--T 285 (329)
T ss_dssp --CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBCS--S
T ss_pred CCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEEECCCCCCCCEEEEcCCCCCCC--C
Confidence 77889999999999999999999999999999999999999999999999999999999999999999999999975 4
Q ss_pred CCccEEEEEEEECCCCCCHHHHHHHHHHHHhhhcCCCCCCCcc
Q psy2902 892 IPGDLFCHVTIETPVQLTEYQKKLLRSLETSILEGGFKHNPRT 934 (945)
Q Consensus 892 ~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (945)
.+|||||+|+|.||+.||++|+++|++|+++.. .++||.
T Consensus 286 ~rGDL~v~~~V~~P~~l~~~q~~~l~~~~~~~~----~~~~~~ 324 (329)
T 3lz8_A 286 HTGDLFAVIKIVMPTKPDEKARELWQQLAAAEA----SFDPRK 324 (329)
T ss_dssp CBCCEEEEEEECCCSSCCHHHHHHHHHHHHHTT----TCCTTT
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHHHhhcc----CCCcch
Confidence 689999999999999999999999999998422 467875
|
| >1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-38 Score=348.65 Aligned_cols=315 Identities=27% Similarity=0.366 Sum_probs=237.7
Q ss_pred CCceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC-Cc-EEecHHHHHhhhhCCCchhHHHHHhhCCCCC
Q psy2902 70 MSKIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-GE-ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFN 147 (945)
Q Consensus 70 m~~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~-~~-~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~ 147 (945)
|+.+||||||||+|++++..++ .++ .+||+|+|+.+ ++ .++|.+|......+|.++..
T Consensus 2 ~~~~igIDlGT~~s~v~~~~~~--~~~-------~~PS~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~~----------- 61 (344)
T 1jce_A 2 LRKDIGIDLGTANTLVFLRGKG--IVV-------NEPSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA----------- 61 (344)
T ss_dssp --CEEEEEECSSEEEEEETTTE--EEE-------EEESCEEEETTTCCEEEESHHHHTTTTCCCTTEEE-----------
T ss_pred CCceEEEEcCcCcEEEEECCCC--EEE-------eeCcEEEEecCCCcEEEEcHHHHHhcccCCCCeEE-----------
Confidence 4458999999999999875332 222 27999999876 44 47999998776666665421
Q ss_pred cHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHH
Q psy2902 148 EKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAG 227 (945)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa 227 (945)
.+|++ ...+...+....++.++...+..........+|||||++|++.||+++++|+
T Consensus 62 ---------~~p~~--------------~g~i~~~~~~~~i~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~~a~ 118 (344)
T 1jce_A 62 ---------IRPMR--------------DGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAG 118 (344)
T ss_dssp ---------ECCEE--------------TTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHH
T ss_pred ---------EecCC--------------CCeeCChHHHHHHHHHHHHHHhhccccCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 01211 1122334445555555555543311112478999999999999999999999
Q ss_pred HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHH
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRII 307 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~ 307 (945)
+.||++.+.+++||+|||++|+... ..+..++|||+||||+|++++... ..+ ..++..+||.+||+.|.
T Consensus 119 ~~aG~~~~~li~ep~Aaa~~~~~~~--~~~~~~lVvDiGggttdvsv~~~~-----~~~----~~~~~~lGG~~id~~l~ 187 (344)
T 1jce_A 119 LEAGASKVFLIEEPMAAAIGSNLNV--EEPSGNMVVDIGGGTTEVAVISLG-----SIV----TWESIRIAGDEMDEAIV 187 (344)
T ss_dssp HHTTCSEEEEEEHHHHHHHHTTCCT--TSSSCEEEEEECSSCEEEEEEETT-----EEE----EEEEESCSHHHHHHHHH
T ss_pred HHcCCCeEeccCCHHHHHHhcCCCC--CCCceEEEEEeCCCeEEEEEEEcC-----CEE----eeCCCCccChhHHHHHH
Confidence 9999999999999999999998765 456789999999999999999862 111 23457899999999999
Q ss_pred HHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc------eeeeeceeeccCCCCeEEEEEEcHHHHHHHHHH
Q psy2902 308 DYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ------TEINEPYIAMSNGAPVHLNLKITRAKLELLVDE 381 (945)
Q Consensus 308 ~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~------~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~ 381 (945)
+++.+++.. ++. ...||++|+.|+.... ..+.++.... ....+..++++|++|+++++|
T Consensus 188 ~~l~~~~~~----~~~---------~~~ae~~K~~l~~~~~~~~~~~~~~~~~~~~~--~~g~~~~~~i~~~~~~~~~~~ 252 (344)
T 1jce_A 188 QYVRETYRV----AIG---------ERTAERVKIEIGNVFPSKENDELETTVSGIDL--STGLPRKLTLKGGEVREALRS 252 (344)
T ss_dssp HHHHHHHCE----ECC---------HHHHHHHHHHHCBCSCCHHHHHCEEEEEEEET--TTTEEEEEEEEHHHHHHHTHH
T ss_pred HHHHHHhCc----ccC---------HHHHHHHHHHHhccCccccCCcceEEEecccc--CCCCceeEEEeHHHHHHHHHH
Confidence 999877642 111 4689999999997643 2344432211 112356889999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCC--CCCC-CcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 382 LITRTIEPCRIAIKDAGIK--VSDI-NDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 382 ~i~~i~~~i~~~l~~~~~~--~~~i-~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
.++++.+.|.++|+.++.. ...+ +.|+|+||+|++|.+++.|++.|+.++....||+++||+|||++|..++
T Consensus 253 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~~~~~v~~~~~p~~ava~Gaa~~a~~~~ 327 (344)
T 1jce_A 253 VVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKVN 327 (344)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEESGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCHH
T ss_pred HHHHHHHHHHHHHHhCCchhccchhhCcEEEECccccchHHHHHHHHHHCCCccccCChHHHHHHHHHHHHhChH
Confidence 9999999999999987532 1224 6899999999999999999999998888788999999999999998544
|
| >3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-37 Score=306.40 Aligned_cols=176 Identities=21% Similarity=0.403 Sum_probs=153.9
Q ss_pred CccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 689 g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
+.++.++|+++|+++|+|+++.+.+.+ .|+.|+|.|
T Consensus 2 ~~d~~~~l~islee~~~G~~k~i~i~~-------------------~c~~c~G~g------------------------- 37 (181)
T 3agx_A 2 DPPVTHDLRVSLEEIYSGCTKKMKISH-------------------KRLNPDGKS------------------------- 37 (181)
T ss_dssp ----CEEEEECHHHHHHCEEEEEEEEE-------------------EEECTTSSC-------------------------
T ss_pred CCCEEEEEEEEHHHhcCCcEEEEEEec-------------------ccCCCCCce-------------------------
Confidence 468899999999999999999987532 233333333
Q ss_pred ecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHH
Q psy2902 769 PHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFST 848 (945)
Q Consensus 769 ~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~e 848 (945)
.+.+.++++|+||+|+++|++|+|+|+|++.++ +.+|||||+|++++|+.|+|+|+||+++++|++.|
T Consensus 38 -----------~~~~~~~l~V~Ip~G~~~G~~ir~~G~G~~~~~-g~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~e 105 (181)
T 3agx_A 38 -----------IRNEDKILTIEVKKGWKEGTKITFPKEGDQTSN-NIPADIVFVLKDKPHNIFKRDGSDVIYPARISLRE 105 (181)
T ss_dssp -----------EEEEEEEEEEEECTTCCTTCEEEETTCSCCCSS-SCCCCEEEEEEECCCSSCEEETTEEEEEEEEEHHH
T ss_pred -----------EEEEeEEEEEEECCCccCCcEEEEeeccccCCC-CCcccEEEEEEEeccccceeeCCcEEEEEEcCHHH
Confidence 345677899999999999999999999999774 68999999999999999999999999999999999
Q ss_pred HhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcCCCCC-CCCccEEEEEEEECCCCCCHHHHHHHHHHH
Q psy2902 849 AALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLLRSLE 920 (945)
Q Consensus 849 al~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~~~~~-~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~ 920 (945)
|++|++++|+||||+ ..+.+|++++||+++||+|+|||..+. +.+|||||+|+|.||+.||++|+++|++++
T Consensus 106 AllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~ls~~q~~~l~~~~ 179 (181)
T 3agx_A 106 ALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVL 179 (181)
T ss_dssp HHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSBCCEEEEEEEECCSCCCHHHHHHHHHHS
T ss_pred HhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 999999999999995 778899999999999999999998653 568999999999999999999999999986
|
| >2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-36 Score=295.33 Aligned_cols=175 Identities=25% Similarity=0.298 Sum_probs=159.4
Q ss_pred CccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 689 g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
+.|++++|+++|+++|+|+++.+.+.+...|+.
T Consensus 3 g~d~~~~l~islee~~~G~~k~i~~~~~~~c~~----------------------------------------------- 35 (180)
T 2q2g_A 3 PRSHEVPLLVTLEELYLGKRKKIKVTRKRFIEH----------------------------------------------- 35 (180)
T ss_dssp -CEEEEEEEECHHHHHHCEEEEEEEEEEEEETT-----------------------------------------------
T ss_pred CCCEEEEEEeeHHHhcCCcEEEEEEeEEEecCC-----------------------------------------------
Confidence 578999999999999999999999887766631
Q ss_pred ecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHH
Q psy2902 769 PHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFST 848 (945)
Q Consensus 769 ~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~e 848 (945)
|.+.+.++++|+||+|+++|++|+|+|+|+++.+++.+|||||+|++++|+.|+|+|+||+++++|++.|
T Consensus 36 ----------g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~g~~gg~~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~e 105 (180)
T 2q2g_A 36 ----------KVRNEENIVEVEIKPGWKDGTKLTYSGEGDQESPGTSPGDLVLIIQTKTHPRFTRDDCHLIMKVTIPLVR 105 (180)
T ss_dssp ----------EEEEEEEEEEEEECTTCCTTCEEEETTCSCCSSTTSCCCEEEEEEEECCCSSCEEETTEEEEEEEEEHHH
T ss_pred ----------ceEEeeEEEEEEECCCCcCCcEEEEeeccCCCCCCCccccEEEEEEEEecccEEEcCCEEEEEEEcCHHH
Confidence 2345667899999999999999999999999666778999999999999999999999999999999999
Q ss_pred HhcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcCCCCC-CCCccEEEEEEEECCCCCCHHHHHHHHHHH
Q psy2902 849 AALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLLRSLE 920 (945)
Q Consensus 849 al~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~~~~~-~~~Gdl~v~~~i~~p~~l~~~~~~~~~~~~ 920 (945)
|++|++++|+||||+ ..+.+|++++||+++||+|+|||..++ +.+|||||+|+|.||+.||++|+++|++++
T Consensus 106 AllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~~~~ 179 (180)
T 2q2g_A 106 ALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDICFPKSLTPEQKKLIKEAL 179 (180)
T ss_dssp HHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEEECCSCCCHHHHHHHHHHC
T ss_pred HhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEEECCCCCCHHHHHHHHHhc
Confidence 999999999999995 778899999999999999999998654 568999999999999999999999999985
|
| >1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=280.40 Aligned_cols=168 Identities=24% Similarity=0.416 Sum_probs=151.2
Q ss_pred ccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEee
Q psy2902 690 KDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIP 769 (945)
Q Consensus 690 ~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~ 769 (945)
.|++++|+++|+++|+|+++.+.+.+. |
T Consensus 1 ~d~~~~l~islee~~~G~~k~i~~~~~--~-------------------------------------------------- 28 (170)
T 1c3g_A 1 ETVQVNLPVSLEDLFVGKKKSFKIGRK--G-------------------------------------------------- 28 (170)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEE--E--------------------------------------------------
T ss_pred CCEEEEEEeEHHHhhCCcEEEEEEEEe--c--------------------------------------------------
Confidence 378899999999999999999987643 0
Q ss_pred cCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeEEeeCHHHH
Q psy2902 770 HPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYEMPISFSTA 849 (945)
Q Consensus 770 ~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~~~i~l~ea 849 (945)
+.|.. +.++++|+||+|+++|++|+|+|+|++..+++.+|||||+|++++|+.|+|+|+||+++++|++.||
T Consensus 29 -------~~G~~-~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~F~R~G~DL~~~~~Isl~eA 100 (170)
T 1c3g_A 29 -------PHGAS-EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPNFKRDGDDLIYTLPLSFKES 100 (170)
T ss_dssp -------TTTEE-EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSSEEEETTEEEEEECCBHHHH
T ss_pred -------CCCcE-EeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCccEEeCCcEeEEEEcCHHHH
Confidence 01223 5578999999999999999999999987777889999999999999999999999999999999999
Q ss_pred hcCCeEEEecCCCe-EEEEeCCCCCCCcEEEECCCCcCCCCC-CCCccEEEEEEEECCCCCCHHHHHHHH
Q psy2902 850 ALGGEIEAPTLNGK-AFFVIPEGTQSGKIFRLRGKGIKNIRS-SIPGDLFCHVTIETPVQLTEYQKKLLR 917 (945)
Q Consensus 850 l~G~~~~v~~l~g~-~~~~i~~~~~~g~~~~i~g~G~~~~~~-~~~Gdl~v~~~i~~p~~l~~~~~~~~~ 917 (945)
++|++++|+||||+ ..+.+|+++++|+++||+|+|||..++ +.+|||||+|+|.||+.||++|+++|+
T Consensus 101 llG~~~~v~tldG~~~~i~i~~~t~~g~~~rl~g~G~p~~~~~~~~GDL~V~~~V~~P~~Ls~~q~~~l~ 170 (170)
T 1c3g_A 101 LLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRAID 170 (170)
T ss_dssp HHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHHTC
T ss_pred hCCCeEEeeCCCCCEEEEECCCccCCCcEEEEeCCCCCcCCCCCCCCCEEEEEEEECCCCCCHHHHHhhC
Confidence 99999999999996 788899999999999999999998644 468999999999999999999999873
|
| >4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=255.44 Aligned_cols=183 Identities=66% Similarity=0.950 Sum_probs=174.9
Q ss_pred EEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCc
Q psy2902 460 LLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGI 539 (945)
Q Consensus 460 ~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~ 539 (945)
++.|++|+|+||++.+|.|.+||++|++||++++.+|++..|||+.+.|.||+|++..+.+|..||+|.|.++|+.|+|.
T Consensus 2 ~l~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~Lg~f~l~gipp~p~G~ 81 (219)
T 4e81_A 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (219)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCSTTC
T ss_pred eEEEecCcEEEEEEeCCEEEEEEeCcCcccEeEEEEEEeCCCCCceEEEEEEEcCCcccccCCEEEEEEEeCCCCCCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccch
Q psy2902 540 PQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKS 619 (945)
Q Consensus 540 ~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~ 619 (945)
++|+|+|.+|.||+|+|+|.+..||+...++|..+.+||++||++|+++++++..+|+..+++.+++|.+++++|.+++.
T Consensus 82 ~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~ 161 (219)
T 4e81_A 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQ 161 (219)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTCSCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEeCCCCCEeeeeeccccCccceEeeeccccccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999998
Q ss_pred hhhhhhhhccChhHHHHHHHHhccc
Q psy2902 620 LKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 620 ~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
+. ++.+.++++++.++.+.+.+.
T Consensus 162 l~--~~~~~l~~~~k~~i~~~l~~~ 184 (219)
T 4e81_A 162 VE--EAGDKLPADDKTAIESALTAL 184 (219)
T ss_dssp HH--HHGGGSCHHHHHHHHHHHHHH
T ss_pred HH--HhhhhCCHHHHHHHHHHHHHH
Confidence 87 467889999999988877653
|
| >3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate binding domain, structural G consortium, SGC, chaperone; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-28 Score=241.76 Aligned_cols=165 Identities=59% Similarity=0.907 Sum_probs=154.4
Q ss_pred CCceEEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCC
Q psy2902 456 RKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPA 535 (945)
Q Consensus 456 ~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~ 535 (945)
...+.+.|++|+|+||++.+|.|.+||++|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.
T Consensus 17 ~~~f~l~DV~P~slGie~~gg~~~~lI~rnt~iP~~k~~~f~T~~DnQ~~v~I~VyqGE~~~~~dn~~LG~f~l~gipp~ 96 (182)
T 3n8e_A 17 NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVEIKVCQGEREMAGDNKLLGQFTLIGIPPA 96 (182)
T ss_dssp -------CBCSSCEEEECTTSBEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCC
T ss_pred CCCEEEEEecCCEEEEEEeCCEEEEEEeCCCccCEEEEEEEEECCCCccEEEEEEEEcCccccccCceEEEEEEcCCCCC
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCeEEEEEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeee
Q psy2902 536 LRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHS 615 (945)
Q Consensus 536 ~~~~~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~ 615 (945)
|+|.++|+|+|++|.||+|+|+|.+..+|++..++|..+.+||++||++|++++++++.+|+..+++.+++|.+|+++|.
T Consensus 97 p~G~~~IeVtf~iD~nGiL~VsA~d~~tg~~~~i~I~~~~~Ls~eei~~mi~~a~~~~~eD~~~~~~~e~kn~le~~iy~ 176 (182)
T 3n8e_A 97 PRGVPQIEVTFDIDANGIVHVSAKDKGTGREQQIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHD 176 (182)
T ss_dssp CTTCSCEEEEEEECTTCCEEEEEEETTTCCEEEEEESCCCCCCHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCeeEEEEEEEecCCEEEEEEEEcCCCCEeeEEEecCccCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred ccchh
Q psy2902 616 TKKSL 620 (945)
Q Consensus 616 ~~~~~ 620 (945)
+++.+
T Consensus 177 ~~~~l 181 (182)
T 3n8e_A 177 TETKM 181 (182)
T ss_dssp CSCCC
T ss_pred HHHhh
Confidence 88765
|
| >3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11, peptide-binding domain, HS 2, protein structure initiative; 2.39A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=225.67 Aligned_cols=150 Identities=57% Similarity=0.890 Sum_probs=141.7
Q ss_pred EEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcC
Q psy2902 461 LLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIP 540 (945)
Q Consensus 461 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~ 540 (945)
+.|++|+|+||++.+|.|.+||++|++||++++++|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|+|.+
T Consensus 2 ~~Dv~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3dob_A 2 NADVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNHRLGTFELSGIPPAPRGVP 81 (152)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCC
T ss_pred ceeeecceEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCceEEEEEEEEcCccccccCceeEEEEEeCCCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEeecCCCceeEEEeccCCC-CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCc
Q psy2902 541 QIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG-LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610 (945)
Q Consensus 541 ~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~-~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e 610 (945)
+|+|+|++|.||+|+|+|.|..||+...++|..+.+ ||++||++|+++++++..+|+..+++.+++|.+|
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3dob_A 82 QIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSDIDRMVHEAKQFEKEDGEQRERVQARNQLE 152 (152)
T ss_dssp CEEEEEEECTTCCEEEEEEETTTCCEEEEEECCC----CHHHHHHHHHHHHHTHHHHHHHHHTCCCCSEEC
T ss_pred eEEEEEEeCCCCeEEEEEEEcCCCCEEEEEEEcCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 999999999999999999999999999999997754 9999999999999999999999999999999875
|
| >3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics, APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=224.70 Aligned_cols=150 Identities=60% Similarity=0.887 Sum_probs=144.9
Q ss_pred EEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcC
Q psy2902 461 LLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIP 540 (945)
Q Consensus 461 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~ 540 (945)
+.|++|+|+||++.+|.|.+||++|++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|+|.+
T Consensus 2 ~~Dv~p~slGi~~~gg~~~~lI~rnt~iP~~k~~~f~t~~d~Q~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (152)
T 3h0x_A 2 NADVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNNLLGKFELTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEECCSSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ccceeccEEEEEEcCCEEEEEEECcCccCEEEEEEEEeCCCCcceeeeeEEEcCccccccCcEEEEEEEeCCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCc
Q psy2902 541 QIEVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610 (945)
Q Consensus 541 ~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e 610 (945)
+|+|+|++|.||+|+|+|.+..+|++..++|..+ .+||++||++|+++++++..+|+..+++.+++|.+|
T Consensus 82 ~I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~I~~~~~~ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~le 152 (152)
T 3h0x_A 82 QIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEEIDRMVEEAEKFASEDASIKAKVESRNKLE 152 (152)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECCTTCCCHHHHHHHHHHHHHTHHHHHHHHHHHHCSCCCC
T ss_pred eEEEEEEEcCCCEEEEEEEEcCCCcEeEEEEecCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999976 579999999999999999999999999999999886
|
| >3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70 protein, peptide-BIN domain, PSI-2, protein structure initiative; 1.72A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=226.64 Aligned_cols=150 Identities=62% Similarity=0.963 Sum_probs=144.1
Q ss_pred EEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcC
Q psy2902 461 LLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIP 540 (945)
Q Consensus 461 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~ 540 (945)
+.|++|+|+||++.+|.|.+||++|++||++++++|++..|+|+.+.|.||+|++..+.+|..||+|.|.++|+.|+|.+
T Consensus 2 ~~DV~p~slGie~~gg~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~i~VyqGe~~~~~dn~~LG~f~l~gipp~p~G~~ 81 (151)
T 3dqg_A 2 NADVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNKLLGQFSLVGIPPAPRGVP 81 (151)
T ss_dssp --CBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCCCCTTCS
T ss_pred cceeeeeEEEEEEcCCEEEEEEECcCccCEEEEEEEEECCCCcceEEEEEEEcCCcccccCcEEEEEEEeCCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCc
Q psy2902 541 QIEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610 (945)
Q Consensus 541 ~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e 610 (945)
+|+|+|++|.||+|+|+|.|..||++..++|..+.+||++||++|+++++++..+|+..+++.+++|.+|
T Consensus 82 ~IeVtf~iD~nGiL~Vsa~d~~tg~~~~i~I~~~~~Ls~~ei~~~~~~a~~~~~~D~~~~~~~~~~n~~e 151 (151)
T 3dqg_A 82 QVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQIENMIKEAEKNAAEDAKRKELVEVINQAE 151 (151)
T ss_dssp CEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSSSSCHHHHHHHHHHHHHHHHHHTTCCCEEECBCCCC
T ss_pred EEEEEEEeccCcEEEEEEEEccCCCEeEEEEecCCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999988889999999999999999999999999999998875
|
| >1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli} SCOP: a.8.4.1 b.130.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-26 Score=236.43 Aligned_cols=181 Identities=43% Similarity=0.656 Sum_probs=172.6
Q ss_pred EeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCe
Q psy2902 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQ 541 (945)
Q Consensus 462 ~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~ 541 (945)
.|++|+++||++.+|.|.+||++|++||++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.|+|.++
T Consensus 1 ~Dv~p~slGie~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~Lg~f~l~gi~~~p~G~~~ 80 (227)
T 1u00_A 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (227)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCcccceEEEEEeCCEEEEEEeCcCccCceEEEEEEecCCCceEEEEEEEecCCccCCCCCEEEEEEEeCCCCCCCCceE
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCccEEEEEeecCCCceeEEEeccCCCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhh
Q psy2902 542 IEVTFDIDANGILHVTAKDKKTGKENKITIKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLK 621 (945)
Q Consensus 542 i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~ 621 (945)
|+|+|++|.||+|+|+|.+..+|+...++|..+.+||++||++++++++++..+|+..+++.+++|.+|+++|.+++.+.
T Consensus 81 I~Vtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~Ls~eei~~~~~~~~~~~~~D~~~~e~~e~kn~le~~i~~~~~~l~ 160 (227)
T 1u00_A 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA 160 (227)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSCCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcEEEEeecccccccceEEEEeccCCCHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999886
Q ss_pred hhhhhhccChhHHHHHHHHhccc
Q psy2902 622 IKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 622 ~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
++.+.++++++.++.+.+.+.
T Consensus 161 --~~~~~~~~~~k~~i~~~l~~~ 181 (227)
T 1u00_A 161 --ADAALLSAAERQVIDDAAAHL 181 (227)
T ss_dssp --HHGGGSCHHHHHHHHHHHHHH
T ss_pred --hhhccCCHHHHHHHHHHHHHH
Confidence 366889999999998888654
|
| >2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural genomics, APC90014. 2, protein structure initiative; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=211.19 Aligned_cols=150 Identities=57% Similarity=0.891 Sum_probs=143.6
Q ss_pred EEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcC
Q psy2902 461 LLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIP 540 (945)
Q Consensus 461 ~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~ 540 (945)
+.|++|++|||++.+|.|.+||++|++||++++.+|++..|+|+.+.|.||||++..+.+|..||++.|.++|+.|+|.+
T Consensus 2 v~Dv~p~slGi~~~~g~~~~li~rnt~iP~~k~~~f~t~~d~Q~~v~i~v~qGe~~~~~~n~~lg~~~l~gipp~p~G~~ 81 (152)
T 2op6_A 2 NADVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNHKLGNFDVTGIPPAPRGVP 81 (152)
T ss_dssp -CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCCEEEEEEESSCSBGGGSEEEEEEEECCCCCCCTTCS
T ss_pred ceEeecccEEEEEeCCEEEEEEeCCCcccEeEEEEEEeCCCCCcEEEEEEEEeCCccCccCCEeEEEEEECCCCCCCCCc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEECCCccEEEEEeecCCCceeEEEeccC-CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCc
Q psy2902 541 QIEVTFDIDANGILHVTAKDKKTGKENKITIKAN-SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610 (945)
Q Consensus 541 ~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~-~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e 610 (945)
+|+|+|++|.||+|+|+|.+..+|+...++|... .+||++||++++++++++..+|+..+++.+++|.+|
T Consensus 82 ~I~V~f~id~nGiL~V~a~d~~tg~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~d~~~~~~~~~kn~~e 152 (152)
T 2op6_A 82 QIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPEDIERMINDADKFAADDQAQKEKVESRNELE 152 (152)
T ss_dssp CEEEEEEECTTSCEEEEEEETTTCCEEEEEECSSSSCCCHHHHHHHHHHHHHTHHHHHHHHHHSCCCSEEC
T ss_pred eEEEEEEECCCcEEEEEEEEecCCcEEEEEeeccccCCCHHHHHHHHHHHHHhHhccHHHHHHHHHHhhcC
Confidence 9999999999999999999999999999999877 469999999999999999999999999999999875
|
| >3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.6e-24 Score=227.66 Aligned_cols=205 Identities=25% Similarity=0.366 Sum_probs=174.4
Q ss_pred ChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCce
Q psy2902 180 APPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRN 259 (945)
Q Consensus 180 ~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~ 259 (945)
...+....+|+++++.++...+.....+++++|+.|+..+|++++++++.+|++...++.||+|++++++...
T Consensus 68 ~d~~~~~~~l~~~~~~~~~~~~~~~~~~v~tvp~~~~~~~~~~~~~~~~~~g~~~~~i~~e~~A~a~~~~~~~------- 140 (272)
T 3h1q_A 68 VDYIGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIND------- 140 (272)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSSSCCCEEEEECCSCC---CTTHHHHHHHHTTCEEEEEECHHHHHHHHHTCSS-------
T ss_pred EcHHHHHHHHHHHHHHHHHhcCCccCeEEEEcCCCCCHHHHHHHHHHHHHcCCeeeecccHHHHHHHHHcCCC-------
Confidence 4456677889999999988888888899999999999999999999999999999999999999999987643
Q ss_pred EEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHH
Q psy2902 260 IVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERA 339 (945)
Q Consensus 260 vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~ 339 (945)
.+|+|+||||++++++.. +.+. ......+||.+||+.+.+++. .+ .+.++++
T Consensus 141 ~~viDiGggst~~~~~~~------g~~~---~~~~~~~Gg~~~~~~l~~~l~--------~~-----------~~~ae~~ 192 (272)
T 3h1q_A 141 GIVVDIGGGTTGIAVIEK------GKIT---ATFDEPTGGTHLSLVLAGSYK--------IP-----------FEEAETI 192 (272)
T ss_dssp EEEEEECSSCEEEEEEET------TEEE---EECCBSCCHHHHHHHHHHHHT--------CC-----------HHHHHHH
T ss_pred EEEEEECCCcEEEEEEEC------CEEE---EEecCCCcHHHHHHHHHHHhC--------CC-----------HHHHHHH
Confidence 599999999999999863 2221 235678999999999988763 11 4578888
Q ss_pred HHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHH
Q psy2902 340 KIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKV 419 (945)
Q Consensus 340 K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v 419 (945)
|+.++ +++++++++.+.++++.+.+.+.++..+ +++.|+|+||+|++|.+
T Consensus 193 k~~~~--------------------------~~~~~~~~~~~~~~~i~~~i~~~l~~~~----~~~~ivL~GG~a~~~~l 242 (272)
T 3h1q_A 193 KKDFS--------------------------RHREIMRVVRPVIEKMALIVKEVIKNYD----QTLPVYVVGGTAYLTGF 242 (272)
T ss_dssp HHSST--------------------------THHHHHHHHHHHHHHHHHHHHHHTTTSC----SSCCEEEESGGGGSTTH
T ss_pred HHhcC--------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCCEEEEECCccchhhH
Confidence 88765 5789999999999999999999988764 36899999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCchhhhhHHHhh
Q psy2902 420 QEKVKEFFGKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 420 ~~~l~~~fg~~~~~~~~p~~avA~GAa~~a 449 (945)
++++++.|+.++..+.+|++++|+|||++|
T Consensus 243 ~~~l~~~l~~~v~~~~~p~~a~a~Gaal~a 272 (272)
T 3h1q_A 243 SEEFSRFLGKEVQVPIHPLLVTPLGIALFG 272 (272)
T ss_dssp HHHHHHHHSSCCBCCSSGGGHHHHHHHTTC
T ss_pred HHHHHHHhCCCccccCChHHHHHHHHHhcC
Confidence 999999999999889999999999999875
|
| >2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-25 Score=247.14 Aligned_cols=230 Identities=18% Similarity=0.155 Sum_probs=168.1
Q ss_pred CCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEE--EEcCCCCCHHHHHHHHHHHHHc--------C------Cccceec
Q psy2902 175 RGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAV--ITVPAYFNDAQRQATKDAGRIA--------G------LEVKRII 238 (945)
Q Consensus 175 ~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~V--itVPa~~~~~qr~~l~~Aa~~A--------G------l~~v~li 238 (945)
.+..+.++...++++..|+..++..... ..++| ++||++|++.||+++++|+..+ | +..+.++
T Consensus 91 ~~~~~~~~~~~~ll~~~l~~~~~~~~~~-~~~vvL~i~vP~~~~~~er~a~~~~~~~~~~~v~~~~G~~~~i~v~~v~li 169 (346)
T 2fsj_A 91 GDGRLASKEAFPLIAAALWESGIHNDGS-PVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMR 169 (346)
T ss_dssp STTCTTSTTTHHHHHHHHHHHCCCC----CEEEEEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEE
T ss_pred CCCcccChhHHHHHHHHHHHhhhccCCC-ceEEEEcccCCHHHHHHHHHHHHHHHcCCCcEEEeCCCceEEEEEEEEEEE
Confidence 3445566677777777777654222222 35699 9999999999999999997765 4 3568899
Q ss_pred chhHHHHHHhccCCC-CCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHH
Q psy2902 239 NEPTAAALAFGLDKS-GKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKI 317 (945)
Q Consensus 239 ~Ep~AAAl~~~~~~~-~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~ 317 (945)
+||+|||++|..... ......++|||+||||||++++++ .++. .+....++..+||.++++.|.+++.+++.
T Consensus 170 ~Ep~AAa~~~l~~~~~~~~~~~vlVvDIGgGTtDv~vi~~----~~g~-~v~~~s~~~~lGg~~i~~~I~~~i~~~~g-- 242 (346)
T 2fsj_A 170 PQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINL----MDME-PVVELSFSLQIGVGDAISALSRKIAKETG-- 242 (346)
T ss_dssp ETTHHHHHHHHHHTSSCCCSSEEEEEEECSSCEEEEEEET----TTTE-ECGGGCEEESCCHHHHHHHHHHHHHHHHC--
T ss_pred ccHHHHHHHhhccccccccCCcEEEEECCCCcEEEEEEEe----cCCE-EEeecCCCcchhHHHHHHHHHHHHHHHhC--
Confidence 999999998822111 123477999999999999999986 4554 45544567789999999999988777654
Q ss_pred hCC--CCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHH-HHHHHHHHHHHHHHHHHHH
Q psy2902 318 NGI--DLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKL-ELLVDELITRTIEPCRIAI 394 (945)
Q Consensus 318 ~~~--~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~-e~~~~~~i~~i~~~i~~~l 394 (945)
. .+. ...+| ....+.+. + -.++++++ +++++++++++.+.+++.|
T Consensus 243 --~~~~i~---------~~~~e---------~~~~~~~~-------g-----~~~~~~~i~~~~i~~~~~~i~~~i~~~l 290 (346)
T 2fsj_A 243 --FVVPFD---------LAQEA---------LSHPVMFR-------Q-----KQVGGPEVSGPILEDLANRIIENIRLNL 290 (346)
T ss_dssp --CCCCHH---------HHHHH---------TTSCEEET-------T-----EEECSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCcCCC---------HHHHh---------cCCeEeEC-------C-----ccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 211 11122 11112211 0 13558999 9999999999999999999
Q ss_pred HHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCC---CCCCCchhhhhHHHhhh
Q psy2902 395 KDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRR---DINPDEAVAVGAAIQGS 450 (945)
Q Consensus 395 ~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~---~~~p~~avA~GAa~~a~ 450 (945)
+++ ..+++.|+|+||+|++ +++.+++.|+. +.. ..||++|+|.|+..++.
T Consensus 291 ~~~---~~~i~~IvL~GGga~l--l~~~l~~~~~~-~~i~~~~~~P~~ava~G~~~~~~ 343 (346)
T 2fsj_A 291 RGE---VDRVTSLIPVGGGSNL--IGDRFEEIAPG-TLVKIKPEDLQFANALGYRDAAE 343 (346)
T ss_dssp GGG---GGGEEEEEEESTTHHH--HGGGGGGGSTT-CBCCCCTTTTTTHHHHHHHHHHH
T ss_pred Hhh---hhcccEEEEECCcHHH--HHHHHHHHCcC-cEEeccCCCcHHHHHHHHHHHHh
Confidence 876 4467999999999999 99999999973 334 67999999999998764
|
| >2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-24 Score=243.63 Aligned_cols=301 Identities=15% Similarity=0.170 Sum_probs=190.4
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQ 152 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~~ 152 (945)
++|||+||++++++++.++.+.+. ..|...+|+... .+| ...++..+...+++++++.
T Consensus 15 ~vgiDiGt~~i~~~~~~~~~~~i~--~~g~~~~ps~~~--~~g-----------~i~d~~~~~~~ik~~~~~~------- 72 (377)
T 2ych_A 15 ALGLEIGASALKLVEVSGNPPALK--ALASRPTPPGLL--MEG-----------MVAEPAALAQEIKELLLEA------- 72 (377)
T ss_dssp CEEEEECSSEEEEEEEETTTTEEE--EEEEEECCTTSE--ETT-----------EESCHHHHHHHHHHHHHHH-------
T ss_pred eEEEEeCCCeEEEEEEeCCceEEE--EEEeEECCCCcc--cCC-----------CcCCHHHHHHHHHHHHHHc-------
Confidence 799999999999999876655442 223334444322 122 2345666777788877530
Q ss_pred hhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCH---------------
Q psy2902 153 KDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFND--------------- 217 (945)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~--------------- 217 (945)
........+...........+....++++++... +...++.+++.++.+++|.+|..=..
T Consensus 73 -~~~~~~v~~~i~~~~~~~~~~~~~~v~~~el~~~----i~~ea~~~~~~~~~~~vid~~~~~~~~~~~~~~~~~v~~va 147 (377)
T 2ych_A 73 -RTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEA----VRWEAERYIPFPIDEVVLDFAPLTPLSEVQEGEQVQVMVAA 147 (377)
T ss_dssp -TCCCCEEEEEECGGGCEEEEEEEECCCHHHHHHH----HHHHHGGGCSSCC-CEEEEEEESSCGGGSCTTSEEEEEEEE
T ss_pred -CCCcceEEEEecCCcEEEEEEECCCCCHHHHHHH----HHHHHhhcCCCChhHceEEEEEeCCCCCCCCcceeEEEEEE
Confidence 0000000011111111111122245677776543 45677888888899999998731111
Q ss_pred ---HHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCC
Q psy2902 218 ---AQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGD 294 (945)
Q Consensus 218 ---~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~ 294 (945)
...+.+.+|++.|||++..++.||+|||++|+.......+..++|+|+||||+|+++++. +.+. ..++
T Consensus 148 ~~~~~v~~~~~~~~~aGl~~~~i~~ep~Aaa~~~~~~~~~~~~~~~~vvDiGggttdi~i~~~------g~~~---~~~~ 218 (377)
T 2ych_A 148 ARQEAVAGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLRG------DKPL---AVRV 218 (377)
T ss_dssp EEHHHHHHHHHHHHHTTCEEEEEEEHHHHTTGGGHHHHHTSTTCEEEEEEECSSCEEEEEEET------TEEE---EEEE
T ss_pred ecHHHHHHHHHHHHHCCCceEEEecchHHHHHHHHhhcccccCCeEEEEEECCCcEEEEEEEC------CEEE---EEEe
Confidence 124889999999999999999999999999864322234567999999999999999974 2221 2345
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHH
Q psy2902 295 TFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAK 374 (945)
Q Consensus 295 ~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~ 374 (945)
..+||.+||+.|.+. ++.+ ..+||++|+.++.............. . ......+++++
T Consensus 219 ~~~GG~~i~~~i~~~--------~~~~-----------~~~aE~~K~~~~~~~~~~~~~~~~i~-~---~~~~~~i~~~~ 275 (377)
T 2ych_A 219 LTLSGKDFTEAIARS--------FNLD-----------LLAAEEVKRTYGMATLPTEDEELLLD-F---DAERERYSPGR 275 (377)
T ss_dssp ESCSHHHHHHHHHHH--------TTCC-----------HHHHHHHHHHTC-----------------------------C
T ss_pred eechHHHHHHHHHHH--------hCCC-----------HHHHHHHHhhcccccccccccccccc-c---ccccccCCHHH
Confidence 678999999998862 2222 46889999998864322111000000 0 02346789999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCC
Q psy2902 375 LELLVDELITRTIEPCRIAIKD--AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR 432 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~~l~~--~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~ 432 (945)
+++++++.++++...|.+.|+. ++.....++.|+|+||+|++|.+++.+++.|+.++.
T Consensus 276 ~~~~i~~~~~~i~~~i~~~l~~~~~~~~~~~~~~IvL~GG~s~~p~l~~~l~~~l~~~v~ 335 (377)
T 2ych_A 276 IYDAIRPVLVELTQELRRSLEFFRIQLEEASPEVGYLLGGGSKLRGLASLLTDTLGVNLE 335 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCSEEEEESGGGGSTTHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCEEEEECccccchhHHHHHHHHhCCCeE
Confidence 9999999999999999999985 345556789999999999999999999999987654
|
| >2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=234.12 Aligned_cols=297 Identities=13% Similarity=0.102 Sum_probs=196.4
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC---------CcEEecHHHHHhhhhCCCchhHHHHHhhC
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN---------GEILVGAPAKRQAVTNPKNTIYAAKRLIG 143 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~~G~~A~~~~~~~~~~~i~~~k~llg 143 (945)
.|+||+||+++++++..++.|..+ +||+++.... ...++|.+|.... .. .
T Consensus 7 ~ivID~Gs~~~k~G~~~~~~p~~~--------~ps~v~~~~~~~~~~~~~~~~~~vG~~a~~~~----~~--~------- 65 (375)
T 2fxu_A 7 ALVCDNGSGLVKAGFAGDDAPRAV--------FPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----GI--L------- 65 (375)
T ss_dssp CEEEEECSSEEEEEETTCSSCSEE--------EECCEEEECTTTC-------CCEEHHHHHHHT----TS--E-------
T ss_pred eEEEECCCCeEEEEECCCCCCcee--------eccccccccccccccCCCCCCeEechhHhhcC----cc--c-------
Confidence 599999999999999876666433 2555544322 2457788776431 00 0
Q ss_pred CCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCC--CCcEEEEcCCCCCHHHHH
Q psy2902 144 RKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGE--ITEAVITVPAYFNDAQRQ 221 (945)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~ 221 (945)
....++....+...+.+..+++++.. ..++.. ...++||+|++++..+|+
T Consensus 66 -------------------------~~~~Pi~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~~~~~~~r~ 117 (375)
T 2fxu_A 66 -------------------------TLKYPIEHGIITNWDDMEKIWHHTFY---NELRVAPEEHPTLLTEAPLNPKANRE 117 (375)
T ss_dssp -------------------------EEECSEETTEECCHHHHHHHHHHHHH---TTSCCCGGGSCEEEEECTTCCHHHHH
T ss_pred -------------------------ceeccccCCcccCHHHHHHHHHHHHH---HhcCCCCcCCcEEEEeCCCCcHHHHH
Confidence 01112223334455666666666653 233333 346999999999999999
Q ss_pred HHHHHH-HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchH
Q psy2902 222 ATKDAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGE 300 (945)
Q Consensus 222 ~l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~ 300 (945)
++.+++ +.+|++.+.+++||.|||++++. .+.+|||+|+||||++.+.- +. .+........+||+
T Consensus 118 ~~~e~~fe~~g~~~~~~~~e~~aaa~a~g~-------~~~lVvDiG~gtt~v~~v~~------G~-~~~~~~~~~~~GG~ 183 (375)
T 2fxu_A 118 KMTQIMFETFNVPAMYVAIQAVLSLYASGR-------TTGIVLDSGDGVTHNVPIYE------GY-ALPHAIMRLDLAGR 183 (375)
T ss_dssp HHHHHHHHTTCCSEEEEEEHHHHHHHHTTC-------SSEEEEEECSSCEEEEEEET------TE-ECGGGCEEESCCHH
T ss_pred HHHHHHHHhcCcceEEEccchheeeeecCC-------CeEEEEEcCCCceEEeEeEC------CE-EeccceEEeccCHH
Confidence 888765 78899999999999999999975 35899999999999988752 32 22222344678999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCC----------------cceeeeeceeeccCCCCe
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSS----------------KQTEINEPYIAMSNGAPV 364 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~----------------~~~~i~i~~~~~~~~~~~ 364 (945)
++|+.|.+++..+. ..+.. .. -...+|++|+.++.. ....+.+|.
T Consensus 184 ~lt~~l~~~l~~~~-----~~~~~-~~----~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpd--------- 244 (375)
T 2fxu_A 184 DLTDYLMKILTERG-----YSFVT-TA----EREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPD--------- 244 (375)
T ss_dssp HHHHHHHHHHHHHT-----CCCCS-HH----HHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTT---------
T ss_pred HHHHHHHHHHHhcC-----CCCCc-HH----HHHHHHHHHHHHHhhcccHHHHHHhhcccCccCeEEECCC---------
Confidence 99999999998751 11110 00 123455556555432 222233321
Q ss_pred EEEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCC--CCCCCcEEEecCccccHHHHHHHHHHhC------
Q psy2902 365 HLNLKITRAKLE---LLVDEL-----ITRTIEPCRIAIKDAGIK--VSDINDIILVGGMTRMPKVQEKVKEFFG------ 428 (945)
Q Consensus 365 ~~~~~itr~~~e---~~~~~~-----i~~i~~~i~~~l~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~fg------ 428 (945)
+..+.++++.|. .++.|. ...+.++|.+.|..+... ...++.|+|+||+|++|.+.++|++.++
T Consensus 245 g~~i~i~~erf~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~IvLtGG~s~~pG~~~rl~~el~~~~p~~ 324 (375)
T 2fxu_A 245 GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPST 324 (375)
T ss_dssp SCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTT
T ss_pred CCEEEEChhheechHhhCCCccCCCCCCCHHHHHHHHHHhCCHHHHHHHHhCcEeeCCCCCCccHHHHHHHHHHHhCCCC
Confidence 235788888773 334442 244677777777765321 2235789999999999999999999875
Q ss_pred --CCCCCCCCCCchhhhhHHHhhhh
Q psy2902 429 --KDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 429 --~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.++....+|..++++||+++|..
T Consensus 325 ~~v~v~~~~~p~~~~w~G~si~a~l 349 (375)
T 2fxu_A 325 MKIKIIAPPERKYSVWIGGSILASL 349 (375)
T ss_dssp CCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred eeEEEEcCCCCCccEEcchHHhhCc
Confidence 23335678999999999999973
|
| >3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=187.40 Aligned_cols=103 Identities=30% Similarity=0.608 Sum_probs=93.9
Q ss_pred ecCCcccccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCCCccEEEEEEEECC
Q psy2902 826 KPHKVFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETP 905 (945)
Q Consensus 826 ~~~~~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p 905 (945)
++|+.|+|+|+||+++++|+|.||++|++++|+|+||...+.||+++++|+++||+|+|||. .+ .+|||||+|+|.||
T Consensus 2 kph~~F~R~G~DL~~~~~Isl~eAl~G~~i~v~tldG~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P 79 (109)
T 3i38_A 2 NAHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMP 79 (109)
T ss_dssp --CCCCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCC
T ss_pred CCCCCeEEECCEEEEEEEcCHHHHhCCCEEEEEcCCCCEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECC
Confidence 58999999999999999999999999999999999999999999999999999999999998 33 78999999999999
Q ss_pred CCCCHHHHHHHHHHHHhhhcCCCCCCCcc
Q psy2902 906 VQLTEYQKKLLRSLETSILEGGFKHNPRT 934 (945)
Q Consensus 906 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (945)
+.||++|+++|+++++... .++||.
T Consensus 80 ~~Ls~~q~~~l~~l~~~~~----~~~~~~ 104 (109)
T 3i38_A 80 TKPDEKARELWQQLAAAEA----SFDPRK 104 (109)
T ss_dssp SSCCHHHHHHHHHHHHHTT----TCCTTC
T ss_pred CCCCHHHHHHHHHHHhhcc----ccCccc
Confidence 9999999999999998742 456664
|
| >1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-23 Score=235.10 Aligned_cols=308 Identities=17% Similarity=0.170 Sum_probs=202.1
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCC-----------------cEEecHHHHHhhhhCCCchh
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENG-----------------EILVGAPAKRQAVTNPKNTI 135 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~-----------------~~~~G~~A~~~~~~~~~~~i 135 (945)
.|+||+||+++++++..++.|..+ +||+++..... ..++|.+|... +
T Consensus 7 ~ivID~Gs~~~k~G~~~~~~p~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~a~~~----~---- 70 (418)
T 1k8k_A 7 ACVVDCGTGYTKLGYAGNTEPQFI--------IPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGDEAIEK----P---- 70 (418)
T ss_dssp CEEEEECSSEEEEEETTCSSCSEE--------EESCEEECC-----------CCCTTGGGCEEEGGGGTSC----T----
T ss_pred eEEEECCCCeEEEeeCCCCCCCCc--------CCceEEEECcccccccccccccccccccCeEEChHHHhc----C----
Confidence 699999999999999866666433 47777664321 14455444321 0
Q ss_pred HHHHHhhCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCC--CCcEEEEcCC
Q psy2902 136 YAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGE--ITEAVITVPA 213 (945)
Q Consensus 136 ~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~--~~~~VitVPa 213 (945)
+-.....+....+...+....++.++.. ..+... ...++||+|+
T Consensus 71 -------------------------------~~~~~~pi~~G~i~d~d~~e~i~~~~~~---~~L~~~~~~~~vvit~p~ 116 (418)
T 1k8k_A 71 -------------------------------TYATKWPIRHGIVEDWDLMERFMEQVIF---KYLRAEPEDHYFLLTEPP 116 (418)
T ss_dssp -------------------------------TSEEECCEETTEESCHHHHHHHHHHHHH---TTTCCCGGGCCEEEEECT
T ss_pred -------------------------------CCEEeccccCCEECCHHHHHHHHHHHHH---hccCCCCCCCcEEEEeCC
Confidence 0011122333334445555556666553 233322 4579999999
Q ss_pred CCCHHHHHHHHHHH-HHcCCccceecchhHHHHHH-hccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe
Q psy2902 214 YFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALA-FGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST 291 (945)
Q Consensus 214 ~~~~~qr~~l~~Aa-~~AGl~~v~li~Ep~AAAl~-~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~ 291 (945)
+|+..+|++|.+++ +.+|++.+.+++||+|||++ |........+.+.+|||+|+||||++++.- +. .+...
T Consensus 117 ~~~~~~r~~~~e~~fe~~g~~~~~l~~ep~aa~~a~~~~~~~~~~~~~glVvDiG~gtt~v~~v~~------G~-~~~~~ 189 (418)
T 1k8k_A 117 LNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERTLTGTVIDSGDGVTHVIPVAE------GY-VIGSC 189 (418)
T ss_dssp TCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGSTTCCSCCCCEEEEEESSSCEEEEEEET------TE-ECGGG
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEechHHHHhhhhhcccccCCCCCeEEEEEcCCCceEEEEeEC------CE-Ecccc
Confidence 99999999999999 88999999999999999988 421111011236799999999999999852 22 12222
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc-----------------eeeeec
Q psy2902 292 NGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ-----------------TEINEP 354 (945)
Q Consensus 292 ~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~-----------------~~i~i~ 354 (945)
.....+||.++|+.|.++|.+++. ...... -...+|++|+.++.... ..+.+|
T Consensus 190 ~~~~~lGG~~lt~~l~~~l~~~~~---~~~~~~-------~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lp 259 (418)
T 1k8k_A 190 IKHIPIAGRDITYFIQQLLRDREV---GIPPEQ-------SLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGI 259 (418)
T ss_dssp CEEESCSHHHHHHHHHHHHHTTCC---CCCGGG-------HHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEE
T ss_pred eEEEeCcHHHHHHHHHHHHHhcCC---CCCCHH-------HHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECC
Confidence 245678999999999999876532 111111 13567888888765321 122222
Q ss_pred eeeccCCCCeEEEEEEcHHHH---HHHHHHH------HHHHHHHHHHHHHHcCC--CCCCCCcEEEecCccccHHHHHHH
Q psy2902 355 YIAMSNGAPVHLNLKITRAKL---ELLVDEL------ITRTIEPCRIAIKDAGI--KVSDINDIILVGGMTRMPKVQEKV 423 (945)
Q Consensus 355 ~~~~~~~~~~~~~~~itr~~~---e~~~~~~------i~~i~~~i~~~l~~~~~--~~~~i~~ViLvGG~s~~p~v~~~l 423 (945)
+........+.+++++| |.++.|. +..+.+.|.+.|..+.. ....++.|+|+||+|++|.+++.|
T Consensus 260 ----d~~~~~~~~i~l~~erf~~~E~lF~P~~~~~~~~~~i~~~i~~si~~~~~~~~~~l~~~IvL~GG~s~~pg~~~rl 335 (418)
T 1k8k_A 260 ----NAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRL 335 (418)
T ss_dssp ----CTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHHHHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHH
T ss_pred ----CCCCCcccEEEeChHHhhCcHhhCCCccCCCCCCCCHHHHHHHHHHcCCHHHHHHHHhceEEeCCccccccHHHHH
Confidence 11112355789999998 4444443 24678888888887653 234568899999999999999999
Q ss_pred HHHhCC------------------------CCCCCCCCCchhhhhHHHhhhh
Q psy2902 424 KEFFGK------------------------DPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 424 ~~~fg~------------------------~~~~~~~p~~avA~GAa~~a~~ 451 (945)
++.++. .+..+.+|..++.+||+++|..
T Consensus 336 ~~el~~~~~~~~~~~~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilasl 387 (418)
T 1k8k_A 336 QRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGSMLAST 387 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHHHHTTS
T ss_pred HHHHHHhhccccccccccccccCCCCceeEEEeCCCccccceeHhHHHHHcC
Confidence 876532 1122456789999999999974
|
| >4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-22 Score=226.34 Aligned_cols=199 Identities=15% Similarity=0.114 Sum_probs=155.4
Q ss_pred HHHHHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCC
Q psy2902 217 DAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTF 296 (945)
Q Consensus 217 ~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~ 296 (945)
....+.+.+|++.|||++..++.||.|||++++... .....++|+|+||||||++++.- +.+.. .+...
T Consensus 167 ~~~v~n~~~~~~~AGL~v~~lv~ep~Aaa~a~l~~~--~~~~gv~vvDiGggttdisi~~~------g~~~~---~~~i~ 235 (419)
T 4a2a_A 167 LKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGVLTTP--EKDRGVVVVNLGYNFTGLIAYKN------GVPIK---ISYVP 235 (419)
T ss_dssp HHHHHHHHHHHHTTSCSCEEEEEHHHHHHHHHCCHH--HHHHCEEEEEECSSSEEEEEEET------TEEEE---EEEES
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEHHHHHHHHhhccc--cccCCEEEEEECCCcEEEEEEEC------CEEEE---EEecc
Confidence 346788999999999999999999999999986543 33457999999999999999973 33322 23467
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCC-----cceeeeeceeeccCCCCeEEEEEEc
Q psy2902 297 LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSS-----KQTEINEPYIAMSNGAPVHLNLKIT 371 (945)
Q Consensus 297 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~-----~~~~i~i~~~~~~~~~~~~~~~~it 371 (945)
+||++||+.|.+.+. . ..++||++|+.++.. ....+.++... + .....++
T Consensus 236 ~GG~~it~dIa~~l~--------~-----------~~~~AE~iK~~~g~a~~~~~~~~~i~v~~~~----~--~~~~~is 290 (419)
T 4a2a_A 236 VGMKHVIKDVSAVLD--------T-----------SFEESERLIITHGNAVYNDLKEEEIQYRGLD----G--NTIKTTT 290 (419)
T ss_dssp CCHHHHHHHHHHHHT--------C-----------CHHHHHHHHHHHCCSCCTTCCCCEEEEECTT----S--CSEEEEE
T ss_pred cHHHHHHHHHHHHHC--------C-----------CHHHHHHHHHHhccCcccCCCCceEEEeecC----C--ccceEEc
Confidence 899999999986532 1 156899999999753 23345554432 1 3467999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCC------CCCCCCcEEEecCccccHHHHHHHHHHhCCCCC--C-----C----
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKDAGI------KVSDINDIILVGGMTRMPKVQEKVKEFFGKDPR--R-----D---- 434 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~~~~------~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~--~-----~---- 434 (945)
|++|+++++|.++++.+.+.+.|+.++. ....++.|+|+||+|++|.+++++++.|+.++. . +
T Consensus 291 ~~~l~~ii~p~veei~~~V~~~L~~~~~~~p~~~~~~~~~~IvLtGG~s~lpgl~e~~~~~~g~~vri~~~~~~~p~~~~ 370 (419)
T 4a2a_A 291 AKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSII 370 (419)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------TTCEEEESGGGGSTTHHHHHHHHHTSCEEECCGGGSSSCCCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccCCEEEEECchhchhhHHHHHHHHHCCCeEEEecCCCCchhcc
Confidence 9999999999999999999999999987 344689999999999999999999999987653 2 1
Q ss_pred ------CCCCchhhhhHHHhhhh
Q psy2902 435 ------INPDEAVAVGAAIQGSV 451 (945)
Q Consensus 435 ------~~p~~avA~GAa~~a~~ 451 (945)
.+|..++|.|.++++..
T Consensus 371 ~~~~~~~~P~~~t~~Gl~~~~~~ 393 (419)
T 4a2a_A 371 NADEVANDPSFAAAFGNVFAVSE 393 (419)
T ss_dssp TCHHHHTCGGGHHHHHTTCC---
T ss_pred CcccccCCchHHHHHHHHHHHhh
Confidence 47899999999998864
|
| >1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=176.02 Aligned_cols=93 Identities=32% Similarity=0.418 Sum_probs=83.6
Q ss_pred cccccCCCceeEEeeCHHHHhcCCeEEEecCCCe-EEEEeCCC--CCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCC
Q psy2902 830 VFERDGDDLHYEMPISFSTAALGGEIEAPTLNGK-AFFVIPEG--TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPV 906 (945)
Q Consensus 830 ~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~-~~~~i~~~--~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~ 906 (945)
.|+|+|+||+++++|+|.||++|++++|+||||+ ..+.||+| +++|+++||+|+|||..+++.+|||||+|+|.||+
T Consensus 1 ~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~ 80 (121)
T 1xao_A 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPE 80 (121)
T ss_dssp CCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCC
T ss_pred CceEECCeEEEEEEcCHHHHhCCCEEEEecCCCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCC
Confidence 4899999999999999999999999999999996 78999999 99999999999999986554689999999999999
Q ss_pred C--CCHHHHHHHHHHHHh
Q psy2902 907 Q--LTEYQKKLLRSLETS 922 (945)
Q Consensus 907 ~--l~~~~~~~~~~~~~~ 922 (945)
. ||++|+++|++++..
T Consensus 81 ~~~ls~~q~~~l~~l~~~ 98 (121)
T 1xao_A 81 NHFTSEENLKKLEEILPP 98 (121)
T ss_dssp TTCSCHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHccc
Confidence 9 999999999999865
|
| >1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR {Escherichia coli} SCOP: b.130.1.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=176.41 Aligned_cols=121 Identities=73% Similarity=1.050 Sum_probs=110.3
Q ss_pred CCceEEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCC
Q psy2902 456 RKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPA 535 (945)
Q Consensus 456 ~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~ 535 (945)
.+++.+.|++|++|||++.++.|.+||++|++||++++.+|++..|+|+.+.|.||||++..+.+|..||++.|.++|+.
T Consensus 14 ~~d~~l~Dv~p~slGIe~~~g~~~~lI~rnt~iP~~k~~~f~t~~dnQ~~v~I~VyqGe~~~~~~n~~Lg~f~l~gipp~ 93 (135)
T 1q5l_A 14 PRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPA 93 (135)
T ss_dssp -------CCCSSCCCEEETTTEECCSSCSSSCSSBCCEEEECCCSSSCSSCEEEEEECCSSSCSSSEEEEEEECCCCCSC
T ss_pred eCcEEEEEeecCcEEEEEECCEEEEEEcCCCeEeEeEeEEEEeccCCceEEEEEEEEeCCcccccCcEEEEEEEeCCCCC
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcCeEEEEEEECCCccEEEEEeecCCCceeEEEeccCCC
Q psy2902 536 LRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG 576 (945)
Q Consensus 536 ~~~~~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~ 576 (945)
|+|.++|+|+|++|.||+|+|+|.|..+|+..+++|+.+.+
T Consensus 94 p~G~~~IeVtf~iD~nGiL~V~a~d~~tg~~~~i~i~~~~~ 134 (135)
T 1q5l_A 94 PRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 134 (135)
T ss_dssp CSSSCCEEEEEEECTTSEEEEEEEETTTCCEEEEEEECSCC
T ss_pred CCceeEEEEEEEECCCCEEEEEEEECCCCCEEEEEEecCCC
Confidence 99999999999999999999999999999999999987644
|
| >2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-20 Score=200.55 Aligned_cols=225 Identities=15% Similarity=0.166 Sum_probs=145.2
Q ss_pred eeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCC-CCHH--HH--HHHHHH------------HHHcCCccceecch
Q psy2902 178 KLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAY-FNDA--QR--QATKDA------------GRIAGLEVKRIINE 240 (945)
Q Consensus 178 ~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~-~~~~--qr--~~l~~A------------a~~AGl~~v~li~E 240 (945)
.+++..+++.+ ..|+. +. ..+. ...+|+++|.. |... |+ +++.+- .+.+++..+.+++|
T Consensus 73 ~~~~~~l~~i~-~aL~~-~~-~~~~-~~~lv~glP~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~e 148 (320)
T 2zgy_A 73 QYSDVNVVAVH-HALLT-SG-LPVS-EVDIVCTLPLTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPE 148 (320)
T ss_dssp GGSHHHHHHHH-HHHHH-HS-CCSC-EEEEEEEECHHHHBCTTSSBCHHHHHHHHHHTTSCEEETTBCCCEEEEEEEEES
T ss_pred cchHHHHHHHH-HHHHH-cC-CCCc-eEEEEEcCCHHHHccCCCcccHHHHHHHHHhhcCcEecCCCcEEEEEEEEEecC
Confidence 45666665543 33332 21 1111 23689999987 6431 21 222211 23345677889999
Q ss_pred hHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCC
Q psy2902 241 PTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGI 320 (945)
Q Consensus 241 p~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~ 320 (945)
|.||++++.... ..+..++|+|+||||+|+++++- +...+....++..+||.+||+.|.+++.++ +.
T Consensus 149 ~~aa~~~~~~~~--~~~~~~~vvDiGggttd~~v~~~------g~~~v~~~~~~~~lGg~~~~~~I~~~l~~~-----~~ 215 (320)
T 2zgy_A 149 SIPAGYEVLQEL--DELDSLLIIDLGGTTLDISQVMG------KLSGISKIYGDSSLGVSLVTSAVKDALSLA-----RT 215 (320)
T ss_dssp SHHHHHHHHHHS--CTTCEEEEEEECSSCEEEEEEEG------GGCCEEEEEEECSCCTHHHHHHHHHHTTCC-----SB
T ss_pred cHHHHHhhhccc--cCCCCEEEEEcCCCeEEEEEEeC------CeeEEeeecCCccccHHHHHHHHHHHHHHc-----CC
Confidence 999999886432 34678999999999999999972 333444456677899999999999888642 21
Q ss_pred CCccCHHHHHHHHHHHHHH-HHHhcC-CcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2902 321 DLRKDSIALQRIKASAERA-KIELSS-SKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAG 398 (945)
Q Consensus 321 ~~~~~~~~~~~L~~~~e~~-K~~Ls~-~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~ 398 (945)
++ + ...+|++ |..-.. .....+.. .-..+++.+++++.++++.+.+.+.+++.
T Consensus 216 ~i--~-------~~~ae~~lk~~~~~~~~~~~i~~---------------~~~~~~~~~~i~~~~~~~~~~i~~~i~~~- 270 (320)
T 2zgy_A 216 KG--S-------SYLADDIIIHRKDNNYLKQRIND---------------ENKISIVTEAMNEALRKLEQRVLNTLNEF- 270 (320)
T ss_dssp GG--G-------HHHHHHHHHTTTCHHHHHHHSSS---------------SCTHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred CC--C-------HHHHHHHHHHhhhhhcccceecC---------------chhhHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 11 1 1234444 322000 00000100 01345666677777777777776666552
Q ss_pred CCCCCCCcEEEecCccccHHHHHHHHHHhCC---CCCCCCCCCchhhhhHHHhh
Q psy2902 399 IKVSDINDIILVGGMTRMPKVQEKVKEFFGK---DPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 399 ~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~---~~~~~~~p~~avA~GAa~~a 449 (945)
.+++.|+|+||+|++ +++.+++.|+. ++....||++|+|+||+++|
T Consensus 271 ---~~~~~vvl~GGga~l--l~~~l~~~~~~~~~~~~~~~~P~~a~A~G~~~~~ 319 (320)
T 2zgy_A 271 ---SGYTHVMVIGGGAEL--ICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 319 (320)
T ss_dssp ---CCCCEEEEESTTHHH--HHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred ---cCCCeEEEECChHHH--HHHHHHHHhCCCCCceeeCCCcHHHHHHHHHHhc
Confidence 468999999999987 99999999987 46778899999999999876
|
| >1nlt_A Protein YDJ1, mitochondrial protein import protein MAS5; beta-strands, chaperone, heat shock, mitochondrion; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 g.54.1.1 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.5e-19 Score=184.34 Aligned_cols=151 Identities=23% Similarity=0.351 Sum_probs=118.6
Q ss_pred CCCCCCCccceeeccccccccccceeeEeeccc------------cccCCCCCccccccC---------cCcccCCCCCC
Q psy2902 683 NNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPS------------WDICKSCYGNGAKKG---------TSPISCFTCSG 741 (945)
Q Consensus 683 ~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~------------~~~C~~C~G~G~~~~---------~~~~~C~~C~G 741 (945)
.++.+...++.++|++.|.+.....+......| ..+|+.|+|+|.... ..+++|+.|+|
T Consensus 9 ~~g~d~~~~l~vslee~~~G~~k~i~~~r~~~C~~C~G~G~~~g~~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G 88 (248)
T 1nlt_A 9 QRGKDIKHEISASLEELYKGRTAKLALNKQILCKECEGRGGKKGAVKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHG 88 (248)
T ss_dssp CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEECTTTTTCSBSTTTCCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSS
T ss_pred CCCCCEEEEEEecHHHhcCCceEEEEeeEEEeCCCCcCccCCCCCCccCCCCCCCcEEEEEEecCceEEEEEEcCCCCCC
Confidence 467789999999999999999988888877665 378999999997532 24679999999
Q ss_pred CceEeEeeceeeeeecCCCCCCceEE-------------------------------------------eecCCcccCCC
Q psy2902 742 QGQVRMQQGFFSIQQTCPKCQGAGKV-------------------------------------------IPHPCLDCNGI 778 (945)
Q Consensus 742 ~G~~~~~~~~~~~~~~C~~C~G~g~~-------------------------------------------~~~~c~~c~G~ 778 (945)
+|++ +...++|+.|+|.|++ .+|+.|+|+|.
T Consensus 89 ~G~~------i~~~~~C~~C~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~g~~GDl~v~i~v~~h~~F~R~G~ 162 (248)
T 1nlt_A 89 TGDI------IDPKDRCKSCNGKKVENERKILEVHVEPGMKDGQRIVFKGEADQAPDVIPGDVVFIVSERPHKSFKRDGD 162 (248)
T ss_dssp SSSC------CCTTSBCSSSTTSCEEEEEEEEEEEECTTCCTTCEEEETTCSCCCTTCBCCCEEEEEEECCCSSCEEETT
T ss_pred cCEE------eccCCCCcccCCCceEeeeEEEEEEECCCccCCCEEEEeeeecCCCCCCcceEEEEEEEecCccceeeCC
Confidence 9998 1128899999999972 68999999996
Q ss_pred ceEee--------------------eeeEEEEeecC--CCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCc--cccc
Q psy2902 779 GRIKR--------------------NKTLEVKIPAG--IENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKV--FERD 834 (945)
Q Consensus 779 g~~~~--------------------~~~l~v~ip~G--~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~--~~r~ 834 (945)
+++.+ .+.+.|+||+| +++|++++++|+|||..++..+|||||+|+|..|.. ++.+
T Consensus 163 DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~ip~g~vt~~g~~~rl~g~Gmp~~~~~~~GDL~V~~~V~~P~~~~Ls~~ 242 (248)
T 1nlt_A 163 DLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPENHFTSEE 242 (248)
T ss_dssp EEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC-------
T ss_pred EEEEEEEeCHHHHhcCCEEEEeCCCCCEEEEEeCCCCeeCCCeEEEEcCCCCccCCCCCcCCEEEEEEEECCCCCCCCHH
Confidence 66555 33468999999 999999999999999765446899999999999988 8887
Q ss_pred CCCce
Q psy2902 835 GDDLH 839 (945)
Q Consensus 835 g~dl~ 839 (945)
+.+++
T Consensus 243 q~~~l 247 (248)
T 1nlt_A 243 NLKKL 247 (248)
T ss_dssp -----
T ss_pred HHHhh
Confidence 76654
|
| >1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=3.7e-19 Score=200.78 Aligned_cols=298 Identities=15% Similarity=0.115 Sum_probs=89.3
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC-----------CcEEecHHHHHhhhhCCCchhHHHHHh
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-----------GEILVGAPAKRQAVTNPKNTIYAAKRL 141 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~-----------~~~~~G~~A~~~~~~~~~~~i~~~k~l 141 (945)
.|+||+||.++++++..++.|..+ +||+++.... ...++|.+|.... ...
T Consensus 8 ~ivID~Gs~~~k~G~ag~~~P~~~--------~Ps~v~~~~~~~~~~~~~~~~~~~~vG~ea~~~~--~~~--------- 68 (394)
T 1k8k_B 8 VVVCDNGTGFVKCGYAGSNFPEHI--------FPALVGRPIIRSTTKVGNIEIKDLMVGDEASELR--SML--------- 68 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEEECCCCeEEEeeCCCCCccee--------ccceeEEEcccccccccCCCCCCeEEChHHHhcC--CCc---------
Confidence 589999999999999877666532 2555544321 1344566554320 000
Q ss_pred hCCCCCcHHHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHH-HHHHHHhCCCCCcEEEEcCCCCCHHHH
Q psy2902 142 IGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMK-KTAEDYLGGEITEAVITVPAYFNDAQR 220 (945)
Q Consensus 142 lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~-~~a~~~~~~~~~~~VitVPa~~~~~qr 220 (945)
....++....+...+.+..+++++. ..... ....-..++||+|+.++..+|
T Consensus 69 ---------------------------~~~~Pi~~G~i~dwd~~e~i~~~~~~~~~L~-~~~~~~~vllt~p~~~~~~~r 120 (394)
T 1k8k_B 69 ---------------------------EVNYPMENGIVRNWDDMKHLWDYTFGPEKLN-IDTRNCKILLTEPPMNPTKNR 120 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------eeeccccCCEEecHHHHHHHHHHHhcccccC-cCCCCCcEEEEECCCCCHHHH
Confidence 0111222223333444455555554 21111 011124589999999999999
Q ss_pred HHHHHHH-HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCch
Q psy2902 221 QATKDAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGG 299 (945)
Q Consensus 221 ~~l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG 299 (945)
+++.+++ +.+|++.+.++.||.|||++++. .+.+|+|+|+|||+++.+.- +.. +........+||
T Consensus 121 ~~~~e~~fe~~~~~~~~~~~~~~~a~~a~g~-------~~~lVVDiG~g~T~v~pv~~------G~~-~~~~~~~~~~GG 186 (394)
T 1k8k_B 121 EKIVEVMFETYQFSGVYVAIQAVLTLYAQGL-------LTGVVVDSGDGVTHICPVYE------GFS-LPHLTRRLDIAG 186 (394)
T ss_dssp ----------------------------------------CCEEEECSSCEEEECEET------TEE-CSTTCEEESCCH
T ss_pred HHHHHHhhhccCCCeEEEEhhHHHHHHhCCC-------ceEEEEEcCCCceEeeeeEC------CEE-cccceEEeeccH
Confidence 9998865 78899999999999999999875 34699999999999998752 221 111112356899
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcc----------------eeeeeceeeccCCCC
Q psy2902 300 EDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQ----------------TEINEPYIAMSNGAP 363 (945)
Q Consensus 300 ~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~----------------~~i~i~~~~~~~~~~ 363 (945)
+++|+.|.+++..+- +......+ .+.+|++|+.+..... ..+.+| +
T Consensus 187 ~~lt~~l~~~l~~~~---~~~~~~~~-------~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lp----d---- 248 (394)
T 1k8k_B 187 RDITRYLIKLLLLRG---YAFNHSAD-------FETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLP----D---- 248 (394)
T ss_dssp HHHHHHHHHHHHHTT---CCCCTTTT-------HHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT----T----
T ss_pred HHHHHHHHHHHHhcC---CCCCcHHH-------HHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECC----C----
Confidence 999999999987641 11110112 3456666766654321 111122 1
Q ss_pred eEEEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhCC----
Q psy2902 364 VHLNLKITRAKLE---LLVDEL-----ITRTIEPCRIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFGK---- 429 (945)
Q Consensus 364 ~~~~~~itr~~~e---~~~~~~-----i~~i~~~i~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg~---- 429 (945)
+..+.++.+.|. -+++|. ...+.+.|.+.|..+..+. .-.+.|+|+||+|.+|.+.++|++.++.
T Consensus 249 -g~~i~i~~erf~~~E~Lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvLtGG~s~~~G~~~rl~~el~~~~~~ 327 (394)
T 1k8k_B 249 -GRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLE 327 (394)
T ss_dssp -SCEEEECTHHHHTGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTHHHHHTTCEEESGGGCSTTHHHHHHHHHHHHHHH
T ss_pred -CCEEEECchhhcChHhhCCchhccCCCCCHHHHHHHHHHhCCHHHHHHHHhCEEEeCcccccccHHHHHHHHHHHHHhh
Confidence 225677877763 233332 2346677778888764332 2357899999999999999999887742
Q ss_pred -------------CC--CCCCCCCchhhhhHHHhhh
Q psy2902 430 -------------DP--RRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 430 -------------~~--~~~~~p~~avA~GAa~~a~ 450 (945)
++ ..+.+|..++.+||+++|.
T Consensus 328 ~~~~~~~~~p~~~~v~v~~~~~~~~~~w~Ggsilas 363 (394)
T 1k8k_B 328 RVLKGDVEKLSKFKIRIEDPPRRKHMVFLGGAVLAD 363 (394)
T ss_dssp HTCSSCCCTTCCCCC---------------------
T ss_pred hhcccccCCCCceEEEEecCCCcceeEEhhhHHhhC
Confidence 22 2245677899999999986
|
| >4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A | Back alignment and structure |
|---|
Probab=99.72 E-value=1.2e-17 Score=179.42 Aligned_cols=189 Identities=15% Similarity=0.169 Sum_probs=122.4
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIID 308 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~ 308 (945)
.++......++|++|+|+++..... ....|+|+|||+++++++. .++.++.....+....|+.++++.+++
T Consensus 68 ~a~~~~~~~Vne~~aha~a~~~~~~----~~~~vl~lgG~~~~~~~~~-----~~g~~~~~~~~~~~~~g~G~f~d~~a~ 138 (276)
T 4ehu_A 68 MNYSDADKQISELSCHARGVNFIIP----ETRTIIDIGGQDAKVLKLD-----NNGRLLNFLMNDKCAAGTGRFLDVMAK 138 (276)
T ss_dssp GGCCSCSEECCHHHHHHHHHHHHST----TCCEEEEECSSCEEEEEEC-----TTSCEEEEEEECSCSTTSHHHHHHHHH
T ss_pred HHhhCCCcccchHHHHHHHHHHhCC----CCCeEEEEcCCCceEEEEE-----ecCceEEEEeCCCcCcchhhHHHHHHH
Confidence 3566778899999999998866542 3346789999999999885 567788888888888899999989888
Q ss_pred HHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHH
Q psy2902 309 YILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIE 388 (945)
Q Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~ 388 (945)
++.-.+..... + .+.......+ ...........-..........++++..+.+.+.+
T Consensus 139 ~l~~~~~~~~~------------~---------~~~a~~~~~i--~~~~~~f~~s~~~~~~~~~~~~~di~a~~~~~v~~ 195 (276)
T 4ehu_A 139 IIEVDVSELGS------------I---------SMNSQNEVSI--SSTCTVFAESEVISHLSENAKIEDIVAGIHTSVAK 195 (276)
T ss_dssp HHTCCGGGHHH------------H---------HTTCSSCCCC--CCCSHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HhccChhhhHH------------H---------HhcCCCCCCc--CCccchhhhhHHHHhhhccccHHHHHHHHHHHHHH
Confidence 87544432110 0 0000000000 00000000000000000001124555555555555
Q ss_pred HHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 389 PCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 389 ~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
.+....... ..++.|+|+||.+++|.|++.+++.||.++..+.+|++++|+|||++|....
T Consensus 196 ~l~~~~~~~----~~~~~vvl~GGva~n~~lr~~l~~~~g~~~~~p~~p~~~~A~GAAl~A~~~~ 256 (276)
T 4ehu_A 196 RVSSLVKRI----GVQRNVVMVGGVARNSGIVRAMAREINTEIIVPDIPQLTGALGAALYAFDEA 256 (276)
T ss_dssp HHHHHHHHH----CCCSSEEEESGGGGCHHHHHHHHHHHTSCEECCSSGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc----ccCCeEEEecCccchHHHHHHHHHHHCCCeeeCCCcchHHHHHHHHHHHHHH
Confidence 554444433 3468999999999999999999999999999999999999999999997543
|
| >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-17 Score=146.86 Aligned_cols=103 Identities=34% Similarity=0.696 Sum_probs=95.3
Q ss_pred CccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 689 GKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 689 g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
|.++.++|+++|+++|+|.++.+.+.+...|+.|+|+|........+|+.|+|+|++.+.+|+++.+.+|+.|+|.|.++
T Consensus 1 ~~~~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~i 80 (104)
T 2ctt_A 1 GSSGSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSII 80 (104)
T ss_dssp CCCCCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEEC
T ss_pred CCceEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceEC
Confidence 35778999999999999999999999999999999999998888889999999999887778888899999999999999
Q ss_pred ecCCcccCCCceEeeeeeEEEEe
Q psy2902 769 PHPCLDCNGIGRIKRNKTLEVKI 791 (945)
Q Consensus 769 ~~~c~~c~G~g~~~~~~~l~v~i 791 (945)
.++|..|.|.|.+.+.++|+|++
T Consensus 81 ~~~C~~C~G~G~v~~~k~l~V~~ 103 (104)
T 2ctt_A 81 ISPCVVCRGAGQAKQKKRSGPSS 103 (104)
T ss_dssp SSCCSSSSSCSEECCCCSSCCSC
T ss_pred CCcCCCCCCeeEEEEEEEEEEEc
Confidence 99999999999999888887764
|
| >3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.57 E-value=6.1e-15 Score=162.83 Aligned_cols=207 Identities=15% Similarity=0.200 Sum_probs=134.7
Q ss_pred CcEEEEcCCCCCHHHH-HHHHHHHHHcCC------------ccceecchhHHHHHHhccCCCC-C---CCceEEEEEeCC
Q psy2902 205 TEAVITVPAYFNDAQR-QATKDAGRIAGL------------EVKRIINEPTAAALAFGLDKSG-K---SDRNIVVYDLGG 267 (945)
Q Consensus 205 ~~~VitVPa~~~~~qr-~~l~~Aa~~AGl------------~~v~li~Ep~AAAl~~~~~~~~-~---~~~~vlVvD~Gg 267 (945)
..+++++|..+...++ +++++++..++- ..+.+++||.||++++..+... . .+..++|+|+||
T Consensus 114 ~~lvvGLP~~~~~~~k~~~l~~~l~~~~~v~~~g~~~~i~I~~V~v~pE~~~a~~~~~~~~~~~~~~~~~~~~~vvDiGg 193 (355)
T 3js6_A 114 VVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGS 193 (355)
T ss_dssp EEEEEEECGGGTTSHHHHHHHHHHSSCEEEEETTEEEEEEEEEEEEEEHHHHHHHHTTEETTEECHHHHTCEEEEEEECS
T ss_pred EEEEEeCCHHHHhHHHHHHHHHHhCCCeEEEECCEEEEEEEEEEEEEeCcHHHHHHHHHccCccccccccCcEEEEEeCC
Confidence 3689999999887777 589888875532 4677999999999998764421 1 478899999999
Q ss_pred cceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc
Q psy2902 268 GTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK 347 (945)
Q Consensus 268 gT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 347 (945)
||+|++++.- +.+ +....+...+|+..+++.+.+++.+++.. ..+. . ...++. .
T Consensus 194 gTtd~~v~~~------~~~-~~~~s~s~~~G~~~~~~~i~~~l~~~~~g---~~l~--~-------~~i~~g-------~ 247 (355)
T 3js6_A 194 GTTIIDTYQN------MKR-VEEESFVINKGTIDFYKRIASHVSKKSEG---ASIT--P-------RMIEKG-------L 247 (355)
T ss_dssp SCEEEEEEET------TEE-CGGGCEEESCCHHHHHHHHHHHTC-----------C--H-------HHHHSC-------C
T ss_pred CcEEEEEEcC------CEE-ccccccCcchHHHHHHHHHHHHHHHhcCC---CcCC--H-------HHHhcC-------C
Confidence 9999999841 111 11112234679999999999998876421 1111 1 111111 0
Q ss_pred ceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHH--HHHHHHH
Q psy2902 348 QTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPK--VQEKVKE 425 (945)
Q Consensus 348 ~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~--v~~~l~~ 425 (945)
. +...... ..-.+.+ .+.+++++++.++.+.+.+.+.+.+ ...++.|+|+||+|.++. +.+.+++
T Consensus 248 ~------~~~~~~~--~~k~~di-~~~i~~a~~~~~~~I~~~i~~~l~~----~~~~~~Ivl~GGGa~l~~~~l~~~i~~ 314 (355)
T 3js6_A 248 E------YKQCKLN--QKTVIDF-KDEFYKEQDSLIEEVMSNFEITVGN----INSIDRIIVTGGGANIHFDSLSHYYSD 314 (355)
T ss_dssp C---------------------C-HHHHHHHHHHHHHHHHHHHHHHTCC----TTSCSEEEEESTTHHHHHHHHHHHSSS
T ss_pred c------ccccccc--ccccccH-HHHHHHHHHHHHHHHHHHHHHHhhc----hhhccEEEEECcchhcchhhHHHHHHH
Confidence 0 0000000 0001111 2446666777777777777666653 355789999999999998 8899999
Q ss_pred HhCCCCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 426 FFGKDPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 426 ~fg~~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
.|+.. .||..|+|.|+..++..+.+
T Consensus 315 ~~~~~----~~p~~anA~G~~~~~~~~~~ 339 (355)
T 3js6_A 315 VFEKA----DDSQFSNVRGYEKLGELLKN 339 (355)
T ss_dssp CEECC----SSGGGHHHHHHHHHHHHHHH
T ss_pred HCCCC----CCcHHHHHHHHHHHHHHHHh
Confidence 88442 89999999999999876653
|
| >3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=2e-13 Score=155.41 Aligned_cols=178 Identities=17% Similarity=0.139 Sum_probs=125.0
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeC---CcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN---GEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEK 149 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~---~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~ 149 (945)
.|+||+||.++++++..++.|..+ +||+|+.... ...++|.++.... +.
T Consensus 25 ~iVID~GS~~~kaG~ag~~~P~~v--------~PSvVg~~~~~~~~~~~vG~e~~~~~---r~----------------- 76 (498)
T 3qb0_A 25 AVVIDPGSYTTNIGYSGSDFPQSI--------LPSVYGKYTADEGNKKIFSEQSIGIP---RK----------------- 76 (498)
T ss_dssp CEEEECCSSEEEEEETTCSSCSEE--------EESEEEEESSCSSCCEECCTTGGGSC---CT-----------------
T ss_pred eEEEECCCcEEEEEECCCCCeeee--------cCceeEEeccCCCccEEEecHHHhcC---cC-----------------
Confidence 599999999999998766656554 4899988643 2466776532210 00
Q ss_pred HHHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCC--CC-cEEEEcCCCCCHHHHHHHHHH
Q psy2902 150 EVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGE--IT-EAVITVPAYFNDAQRQATKDA 226 (945)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~--~~-~~VitVPa~~~~~qr~~l~~A 226 (945)
.-.+...+....+...+.+..++.++.... +... -. .++||.|.......|+.|.++
T Consensus 77 -----------------~l~l~~Pi~~GvI~dwd~~E~iw~~~f~~~---L~v~p~~~~pvlltep~~n~~~~Re~~~ei 136 (498)
T 3qb0_A 77 -----------------DYELKPIIENGLVIDWDTAQEQWQWALQNE---LYLNSNSGIPALLTEPVWNSTENRKKSLEV 136 (498)
T ss_dssp -----------------TEEEEESEETTEESCHHHHHHHHHHHHHHT---SCCSCCTTCCEEEEECTTCCHHHHHHHHHH
T ss_pred -----------------ceEEeccCcCCEEccHHHHHHHHHHHHHhh---hCCCcccCCceEEEeCCCCcHHHHHHHHHH
Confidence 001233344556667777777777776532 3221 22 589999998889999999887
Q ss_pred H-HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHH
Q psy2902 227 G-RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQR 305 (945)
Q Consensus 227 a-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~ 305 (945)
+ +.+|++.+.++.+|.||+++++.. +-||+|+|+|+|+++.+.-...-.... .-..+||.++|+.
T Consensus 137 lFE~f~vpav~l~~~~vlalya~G~~-------tglVVDiG~g~T~vvPI~~G~~l~~ai-------~rl~vgG~~lt~~ 202 (498)
T 3qb0_A 137 LLEGMQFEACYLAPTSTCVSFAAGRP-------NCLVVDIGHDTCSVSPIVDGMTLSKST-------RRNFIAGKFINHL 202 (498)
T ss_dssp HHTTSCCSEEEEEEHHHHHHHHHTCS-------SEEEEEECSSCEEEEEEETTEECGGGC-------EEESCSHHHHHHH
T ss_pred HHhhcCCCeEeecchHHHHHHHcCCC-------eEEEEEcCCCcEEEEEEeCCEEccccc-------eeccccHHHHHHH
Confidence 5 789999999999999999998763 249999999999999985311111111 1136799999999
Q ss_pred HHHHHHH
Q psy2902 306 IIDYILD 312 (945)
Q Consensus 306 l~~~l~~ 312 (945)
|.++|.+
T Consensus 203 L~~lL~~ 209 (498)
T 3qb0_A 203 IKKALEP 209 (498)
T ss_dssp HHHHTTT
T ss_pred HHHHHHh
Confidence 9999864
|
| >3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.9e-14 Score=161.03 Aligned_cols=254 Identities=16% Similarity=0.091 Sum_probs=155.3
Q ss_pred CCeeeChhhHHHHHHHHHHHHHHHHhCCC--CCcEEEEcCCCCCHHHHHHHHHHH-HHcCCccceecchhHHHHHHhccC
Q psy2902 175 RGKKLAPPQISAEVLRKMKKTAEDYLGGE--ITEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAFGLD 251 (945)
Q Consensus 175 ~~~~~~~~ev~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~ 251 (945)
.+..+...+.+..+++++... .+... -..+++|.|...+...|+.+.+++ +.+|++.+.++.+|.+|+++++..
T Consensus 95 ~~GvI~dwd~~e~iw~~~~~~---~L~v~~~~~pvlltep~~~~~~~re~~~ei~FE~~~~p~v~l~~~~vla~~a~G~~ 171 (427)
T 3dwl_A 95 RHGQIENWDHMERFWQQSLFK---YLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTS 171 (427)
T ss_dssp ETTEECCHHHHHHHHHHHHHT---TSCCCGGGCEEEEEECTTCCHHHHHHHHHHHTTTTCCSEEEEEEHHHHHHHGGGGS
T ss_pred ccCeeccHHHHHHHHHHHHhH---hhCCCCcCCcEEEEcCCCCCHHHHHHHHHHHHHhccCceeeecchHHHHHHhcCCc
Confidence 344556667777777766542 23322 246899999999999999998887 789999999999999999998754
Q ss_pred CCC-CCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHH
Q psy2902 252 KSG-KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQ 330 (945)
Q Consensus 252 ~~~-~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~ 330 (945)
... ....+-||+|+|+|+|+++.+.-...-.... ....+||.++|+.|.++|..+.....
T Consensus 172 ~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~-------~rl~~gG~~lt~~L~~lL~~~~~~~~------------ 232 (427)
T 3dwl_A 172 SKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSI-------KTMPLAGRDVTYFVQSLLRDRNEPDS------------ 232 (427)
T ss_dssp TTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGC-------EEESCCHHHHHHHHHHTTC-------------------
T ss_pred ccccCCCceEEEEECCCCceEEEEEECCEEehhhh-------eeccccHHHHHHHHHHHHHHcCCCch------------
Confidence 211 1135679999999999999985211111111 11367999999999988876543200
Q ss_pred HHHHHHHHHHHHhcCCcce---ee--------eeceeeccCCCCeEEEEEEcHHHH---HHHHHHH------HHHHHHHH
Q psy2902 331 RIKASAERAKIELSSSKQT---EI--------NEPYIAMSNGAPVHLNLKITRAKL---ELLVDEL------ITRTIEPC 390 (945)
Q Consensus 331 ~L~~~~e~~K~~Ls~~~~~---~i--------~i~~~~~~~~~~~~~~~~itr~~~---e~~~~~~------i~~i~~~i 390 (945)
=.+.++.+|+.+...... ++ .+..............+.+..+.| |-++.|- ...+.+++
T Consensus 233 -~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~~gI~~~i 311 (427)
T 3dwl_A 233 -SLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELV 311 (427)
T ss_dssp --CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCCSCHHHHH
T ss_pred -hHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccCCCccHHH
Confidence 034566777776643211 00 000000000000122456666665 2334441 23466777
Q ss_pred HHHHHHcCCCC--CCCCcEEEecCccccHHHHHHHHHHhC----------------------CCCCCCCCCCchhhhhHH
Q psy2902 391 RIAIKDAGIKV--SDINDIILVGGMTRMPKVQEKVKEFFG----------------------KDPRRDINPDEAVAVGAA 446 (945)
Q Consensus 391 ~~~l~~~~~~~--~~i~~ViLvGG~s~~p~v~~~l~~~fg----------------------~~~~~~~~p~~avA~GAa 446 (945)
.+.|.++..+. .-...|+|+||+|.+|.+.++|.+.+. .++..+.++..++=+|++
T Consensus 312 ~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~r~~s~WiGGS 391 (427)
T 3dwl_A 312 DNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGS 391 (427)
T ss_dssp HHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTTCTTHHHHHHH
T ss_pred HHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCccccceecCce
Confidence 77777654321 113569999999999999998887651 111224466789999999
Q ss_pred Hhhhh
Q psy2902 447 IQGSV 451 (945)
Q Consensus 447 ~~a~~ 451 (945)
++|..
T Consensus 392 ilasl 396 (427)
T 3dwl_A 392 LLAQT 396 (427)
T ss_dssp HHHHS
T ss_pred eeccc
Confidence 99963
|
| >4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-14 Score=159.86 Aligned_cols=203 Identities=15% Similarity=0.148 Sum_probs=136.4
Q ss_pred CcEEEEcCCCCCH--HHHHHHHHHHHHc--------C------CccceecchhHHHHHHhccCCCCCCCceEEEEEeCCc
Q psy2902 205 TEAVITVPAYFND--AQRQATKDAGRIA--------G------LEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGG 268 (945)
Q Consensus 205 ~~~VitVPa~~~~--~qr~~l~~Aa~~A--------G------l~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~Ggg 268 (945)
..++++.|..+.. .+++.+++....- | +..+.+++||.+|.+.+.. ......++|+|+|||
T Consensus 106 v~lv~gLP~~~~~~~~~k~~~~~~l~~~~~v~~~~~g~~~~i~I~~v~v~pe~~ga~~~~~~---~~~~~~v~vvDiGgg 182 (329)
T 4apw_A 106 VQLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQE---NFKNKNVAVIDFGGL 182 (329)
T ss_dssp EEEEEEECGGGTTSSTTTTHHHHHHSSCEEECSSTTCCCEEEEEEEEEEEEHHHHHHHHSCC---CCTTCEEEEEEECSS
T ss_pred EEEEEcCCHHHhcchhHHHHHHHHhcCCceEEEEECCEEEEEEEeEEEEEeccHHHHhhcch---hhccCCEEEEEeCCC
Confidence 4688999987653 3677777765521 1 1346689999998877531 235788999999999
Q ss_pred ceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHH-HHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc
Q psy2902 269 TFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILD-EFNKINGIDLRKDSIALQRIKASAERAKIELSSSK 347 (945)
Q Consensus 269 T~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~-~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~ 347 (945)
|+|++++.- +.+ +....+...+||.++++.+.+++.+ ++. ..+.. ..+|++++. ..
T Consensus 183 Ttd~~v~~~------g~~-~~~~~~~~~~G~~~~~~~i~~~l~~~~~g----~~i~~---------~~~e~i~~~-g~-- 239 (329)
T 4apw_A 183 NMGFSLYRN------CVV-NPSERFIEEHGVKDLIIRVGDALTDLNNG----NLITN---------EQAESALNN-GY-- 239 (329)
T ss_dssp CEEEEEEET------TEE-CGGGCEEESCCHHHHHHHHHTSSSSCSSC----SCTTS---------BTTTTCSSS-CS--
T ss_pred cEEEEEEEC------CEE-eeccccchhhHHHHHHHHHHHHHHhhccC----CCCCH---------HHHHHHHhc-CC--
Confidence 999999973 222 2122234568999999999988766 433 22211 122333221 00
Q ss_pred ceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh
Q psy2902 348 QTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF 427 (945)
Q Consensus 348 ~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f 427 (945)
+. ...+ + ..+..+++++.+++.++.+.+.+.+. +.++..++.|+|+||+|.+ +.+.+++.|
T Consensus 240 ---~~---~g~~------~-~~~~~~~i~~~~~e~~~~I~~~i~~~----~~~~~~~~~IvltGGGA~l--~~~~l~~~~ 300 (329)
T 4apw_A 240 ---MK---KGGE------I-DTESSTVIKKVKEKFLKDAIKLIEKR----GFKLDQLDSLIFIGGTTQK--LKEQISKTY 300 (329)
T ss_dssp ---SC---EECT------T-CCSTTHHHHHHHHHHHHHHHHHHHHH----TCCTTSCSEEEEESTTHHH--HHHHHHHHS
T ss_pred ---cc---cCCc------c-hhHHHHHHHHHHHHHHHHHHHHHHHc----CCCHHHccEEEEECChHHH--HHHHHHHHc
Confidence 00 0000 0 13456777777777777777766655 3444557999999999998 569999999
Q ss_pred CCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 428 GKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 428 g~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
+.++....||..|+|+|+..++...
T Consensus 301 ~~~v~v~~~P~~a~a~G~~~~~~~k 325 (329)
T 4apw_A 301 PNNSIITNNSQWTTCEGLYKVAVAK 325 (329)
T ss_dssp TTCEECCSSGGGHHHHHHHHHHHHH
T ss_pred CCCCEecCCChhhHHHHHHHHHhhh
Confidence 8778788999999999999887643
|
| >1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-12 Score=107.00 Aligned_cols=76 Identities=53% Similarity=1.149 Sum_probs=67.5
Q ss_pred eeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEe
Q psy2902 707 FNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIK 782 (945)
Q Consensus 707 ~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~ 782 (945)
.++.+.+.+...|+.|+|+|........+|+.|+|+|++...+|+++...+|+.|+|.|.++.++|..|.|.|.+.
T Consensus 2 ~~~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~~~~~C~~C~G~G~~~ 77 (79)
T 1exk_A 2 VTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVE 77 (79)
T ss_dssp TTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEE
T ss_pred cEEEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEECCCcCCCCCCeEEEe
Confidence 4556677888999999999998877778999999999987666888888999999999999999999999999765
|
| >3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-11 Score=141.58 Aligned_cols=208 Identities=13% Similarity=0.125 Sum_probs=125.5
Q ss_pred HHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCce-EEE-EE-----ec
Q psy2902 224 KDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQ-FEV-LS-----TN 292 (945)
Q Consensus 224 ~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~-~~v-l~-----~~ 292 (945)
.++|+..|| +++....+..||+++.+... .+ .+++-+|.+++-..+..-........ +.. +. ..
T Consensus 219 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~---~g--~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (504)
T 3ll3_A 219 TEYVKKLGIDSDTKIILGASDGYLSTIGVNAID---SD--HCALNVGTSGAIRTIVDQPKIDPSASYFCYPADKTHYLLG 293 (504)
T ss_dssp HHHHHHHTCCTTCEEEEEEEHHHHHHHTTTCCS---TT--EEEEEESSSEEEEEEESSCCCCTTCCSEEEEEETTEEEEE
T ss_pred HHHHHhcCCCcCCCEEEEccHHHHHHHhCCCCC---CC--cEEEEechhhhheeeCCCcccCCCCceEEEEeCCCeEEEE
Confidence 456666666 46667889999999886643 12 34455676665544332111111111 111 00 01
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCC
Q psy2902 293 GDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAP 363 (945)
Q Consensus 293 ~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~ 363 (945)
+....||. .++|+++.+.... .. ...+...+++ ........+.+|++.... +..
T Consensus 294 g~~~~~G~-----~~~W~~~~~~~~~-----~~---~~~~~~~a~~----~~~g~~gl~~~P~~~Ger~P~~d~~arg~~ 356 (504)
T 3ll3_A 294 GPVNNGGI-----VFNWARQTLFDAD-----ET---PQDFLDVAQT----APAGSRNLIFLPYLGGERAPIWDANARGSF 356 (504)
T ss_dssp EEESCSHH-----HHHHHHHHHTCTT-----CC---HHHHHHHHHT----SCTTGGGCEEECCTTCBCTTTCBTTCCEEE
T ss_pred eehhhHHH-----HHHHHHHHhccch-----hH---HHHHHHHHhc----CCCCCCCeEEecCccCCCCCCCCCccCeEE
Confidence 11233444 5578888774211 11 1122222222 123345567777764211 111
Q ss_pred eEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhh
Q psy2902 364 VHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAV 443 (945)
Q Consensus 364 ~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~ 443 (945)
.+++...++.+|-+.+-+.+......+.+.|++.+. .++.|.++||+++++.|.+++++.||.++... .+.++.|+
T Consensus 357 ~Gl~~~~~~~~l~RAvlEgia~~~r~~~~~l~~~g~---~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~al 432 (504)
T 3ll3_A 357 VGLTRMHQKPEMARAVIEGIIFNLYDAASNLIKNTK---KPVAINATGGFLKSDFVRQLCANIFNVPIVTM-KEQQSGTL 432 (504)
T ss_dssp EEECTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTSC---CCSEEEEESGGGCSHHHHHHHHHHHTSCEEEE-SCSCHHHH
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEeCchhcCHHHHHHHHHhhCCeEEec-CCCCchhH
Confidence 344455688888877777666666666677776553 47899999999999999999999999998754 45779999
Q ss_pred hHHHhhhhccCCCC
Q psy2902 444 GAAIQGSVLSGDRK 457 (945)
Q Consensus 444 GAa~~a~~~~~~~~ 457 (945)
|||+.|+...|..+
T Consensus 433 GaA~lA~~a~G~~~ 446 (504)
T 3ll3_A 433 AAMFLARQALGLNQ 446 (504)
T ss_dssp HHHHHHHHHTTSCC
T ss_pred HHHHHHHHHcCccC
Confidence 99999998777443
|
| >4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.9e-09 Score=124.30 Aligned_cols=111 Identities=15% Similarity=0.210 Sum_probs=82.9
Q ss_pred HHHHHHHHH-HHhCCCCC-----cEEEEcCCCCCHHHHHHHHHH-HHHcCCccceecchhHHHHHHhccCCCCCCCceEE
Q psy2902 189 LRKMKKTAE-DYLGGEIT-----EAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIV 261 (945)
Q Consensus 189 L~~l~~~a~-~~~~~~~~-----~~VitVPa~~~~~qr~~l~~A-a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vl 261 (945)
+..|++++- ..++.... .++||.|..++...|+.|.+. .+..|++.+.++.++.||+++++.. +-+
T Consensus 177 ~e~iw~~~~~~~L~i~~~d~~~~pvlltep~~~~~~~re~~~eilFE~f~~pa~~~~~~~vla~ya~G~~-------tgl 249 (593)
T 4fo0_A 177 IEVIWSHAIQKYLEIPLKDLKYYRCILLIPDIYNKQHVKELVNMILMKMGFSGIVVHQESVCATYGSGLS-------STC 249 (593)
T ss_dssp HHHHHHHHHHHTSCCCGGGGGGCEEEEEECSSCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHHTCS-------EEE
T ss_pred HHHHHHHHHHHhcCCCchhccCCcEEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEeechHHHHHHHCCCC-------ceE
Confidence 445555553 45654433 389999999999999888665 5677999999999999999998764 468
Q ss_pred EEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHH
Q psy2902 262 VYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDE 313 (945)
Q Consensus 262 VvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~ 313 (945)
|||+|.+.|.++-+.-+-.-...... ..+||.++++.|.++|..+
T Consensus 250 VVDiG~~~T~v~PV~dG~~l~~~~~r-------l~~GG~~lt~~L~~lL~~~ 294 (593)
T 4fo0_A 250 IVDVGDQKTSVCCVEDGVSHRNTRLC-------LAYGGSDVSRCFYWLMQRA 294 (593)
T ss_dssp EEEECSSCEEEEEEESSCBCGGGCEE-------ESCCHHHHHHHHHHHHHHT
T ss_pred EEEeCCCceeeeeeECCEEehhheEE-------ecccHHHHHHHHHHHHHhc
Confidence 99999999999988632111122222 3579999999999888754
|
| >3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=6e-11 Score=137.98 Aligned_cols=216 Identities=15% Similarity=0.067 Sum_probs=126.6
Q ss_pred HHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEE-EEeec-CCceEEEEEec-CCC-
Q psy2902 224 KDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE-IADVD-GEKQFEVLSTN-GDT- 295 (945)
Q Consensus 224 ~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~-~~~~~-~~~~~~vl~~~-~~~- 295 (945)
.++|+..|| +++....+..||+++.+... .+. +++-+|.+++-..+.. -.... ....+...... .+.
T Consensus 223 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (511)
T 3hz6_A 223 ALAARQTGFVSGTPVLCGLGDAGAATLGVGVLD---DED--AYLHLGTTGWLARLTQTDPVGDMPVGTIFRLAGIIAGKT 297 (511)
T ss_dssp HHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCS---TTC--EEEEESSSEEEEEEEECCCCCSCCSSCCEEECSSSTTEE
T ss_pred HHHHHhhCCCCCCeEEEECchHHHHHHhCCCCC---CCc--EEEEecchhhheeecCCeecccCCCCceEEEEEecCCce
Confidence 467777666 46667889999999887643 233 3445677665555444 11111 22222222211 000
Q ss_pred -CCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCC---------CCeE
Q psy2902 296 -FLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNG---------APVH 365 (945)
Q Consensus 296 -~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~---------~~~~ 365 (945)
.+|+...-...++|+++.+... . .. .+..|.+.++++.... ......+.+|++..... ...+
T Consensus 298 ~~~g~~~~~G~~~~W~~~~~~~~--~--~~---~~~~l~~~a~~~~~g~-~~~~gl~~~P~~~Ger~P~~d~~arg~~~G 369 (511)
T 3hz6_A 298 LQVAPVLNAGNILQWALTLVGHR--P--GE---DCAEYFHMAAAEVQGV-TVPDGLLFVPYLHAERCPVELPAPRGALLG 369 (511)
T ss_dssp EEEEEESSSHHHHHHHGGGGTCC--T--TS---CSHHHHHHHHHHHTTC-CCCTTCEEEEESSCBCSSSCBSSCEEEEEC
T ss_pred EEEeehhhHHHHHHHHHHHhccc--c--cc---cHHHHHHHHHhCCCCC-CCCCCEEEeCCCCCCCCCCCCCccceEEEc
Confidence 0122222235678887766410 0 00 1334555555542110 00345567776542211 1123
Q ss_pred EEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCC-CCCCCCCchhhhh
Q psy2902 366 LNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDP-RRDINPDEAVAVG 444 (945)
Q Consensus 366 ~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~-~~~~~p~~avA~G 444 (945)
++...++.+|.+.+-+.+......+.+.|++ + . ++.|.++||+++++.|.+++++.||.++ .. ..+.++.|+|
T Consensus 370 l~~~~~~~~l~RAvlEgia~~~~~~~~~l~~-g---~-~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~~e~~alG 443 (511)
T 3hz6_A 370 VTGATTRAQILLAVLEGAALSLRWCAELLGM-E---K-VGLLKVVGGGARSEAWLRMIADNLNVSLLVK-PDAHLHPLRG 443 (511)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHTG-G---G-CCEEEEESGGGGCHHHHHHHHHHHTCEEEEC-CCGGGHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhc-C---C-CCEEEEeCchhcCHHHHHHHHHHHCCeeEEe-cCCCCchHHH
Confidence 3445678888777666665555555556655 3 3 6899999999999999999999999998 64 4478999999
Q ss_pred HHHhhhhccCCCCc
Q psy2902 445 AAIQGSVLSGDRKD 458 (945)
Q Consensus 445 Aa~~a~~~~~~~~~ 458 (945)
||+.|+...|..++
T Consensus 444 aA~lA~~a~G~~~~ 457 (511)
T 3hz6_A 444 LAALAAVELEWSHS 457 (511)
T ss_dssp HHHHHHHHTTSCSC
T ss_pred HHHHHHHHhCCcCC
Confidence 99999988775443
|
| >2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A | Back alignment and structure |
|---|
Probab=99.10 E-value=9.1e-10 Score=121.69 Aligned_cols=200 Identities=21% Similarity=0.173 Sum_probs=132.5
Q ss_pred HHHHHHHHHHHHHc-CC--ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecC
Q psy2902 217 DAQRQATKDAGRIA-GL--EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNG 293 (945)
Q Consensus 217 ~~qr~~l~~Aa~~A-Gl--~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~ 293 (945)
..+-+.+.++.+.+ || ++-. .||.||+++++.+. ..+-.+.++|+||||||++++. .+.........
T Consensus 367 ~~~m~NI~~cVer~~gL~veV~g--~ep~AAglaaLTeD--E~eLGvaiIDmGGGTTd~sVf~-----~G~lv~a~~ip- 436 (610)
T 2d0o_A 367 RLQMAMIAREIEQKLNIDVQIGG--AEAEAAILGALTTP--GTTRPLAILDLGAGSTDASIIN-----PKGDIIATHLA- 436 (610)
T ss_dssp CCCHHHHHHHHHHHHCCEEEEEE--EHHHHHHHHHTTST--TCCSSEEEEEECSSEEEEEEEC-----TTCCEEEEEEE-
T ss_pred HHHHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCC--CCcCCeEEEEeCCCcceEEEEc-----CCcEEEEEEec-
Confidence 34578888999999 99 5545 99999999998877 5677789999999999999996 33333333333
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc----------ceeeee--ceeeccCC
Q psy2902 294 DTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK----------QTEINE--PYIAMSNG 361 (945)
Q Consensus 294 ~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------~~~i~i--~~~~~~~~ 361 (945)
.||++++..+..-|.-. + ...||++|. ..... +..+.+ +.+.....
T Consensus 437 ---~gG~~VT~DIA~~Lgt~-----------d-------~~~AErIK~-YG~A~ve~lf~~~dede~Iev~~~~lgp~~~ 494 (610)
T 2d0o_A 437 ---GAGDMVTMIIARELGLE-----------D-------RYLAEEIKK-YPLAKVESLFHLRHEDGSVQFFSTPLPPAVF 494 (610)
T ss_dssp ---CSHHHHHHHHHHHHTCC-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGT
T ss_pred ---cchHHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCccee
Confidence 49999998887543211 0 457899998 64321 223333 33221110
Q ss_pred CC-----eEEEEEEcHHH--HHHHHHHHHHHHHHH--HHHHHHHcCC-----CCCCCCcEEEecCccccHHHHHHHHHHh
Q psy2902 362 AP-----VHLNLKITRAK--LELLVDELITRTIEP--CRIAIKDAGI-----KVSDINDIILVGGMTRMPKVQEKVKEFF 427 (945)
Q Consensus 362 ~~-----~~~~~~itr~~--~e~~~~~~i~~i~~~--i~~~l~~~~~-----~~~~i~~ViLvGG~s~~p~v~~~l~~~f 427 (945)
.. ...-..| +.. +|+ ++-+-+++.+. +..+|+..+. ...+|..|+|+||+|.++.+.++.++.|
T Consensus 495 ~Rv~~~~~~~L~~I-~pR~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~GI~ElA~~iL 572 (610)
T 2d0o_A 495 ARVCVVKADELVPL-PGDLALEK-VRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDAL 572 (610)
T ss_dssp TCEEEECSSCEEEC-CTTCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHT
T ss_pred eeeecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCccCCCcccccCCEEEeCchhhcccHHHHHHHHh
Confidence 00 0112345 556 666 55544444333 2333444322 2346799999999999999999999999
Q ss_pred CC-CCC-------CCCCCCchhhhhHHHhhh
Q psy2902 428 GK-DPR-------RDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 428 g~-~~~-------~~~~p~~avA~GAa~~a~ 450 (945)
+. ++. ....|..|+|.|.+++.+
T Consensus 573 ~~y~VRiGrP~~~gv~gP~fAtAvGLlly~~ 603 (610)
T 2d0o_A 573 AHYRLVAGRGNIRGSEGPRNAVATGLILSWH 603 (610)
T ss_dssp TTSSCEEEECCGGGTSTTSCHHHHHHHHHHH
T ss_pred CcCCeEEecCCccccCCCcHHHHHHHHHHHh
Confidence 87 542 245899999999998764
|
| >3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=99.09 E-value=5.3e-11 Score=138.31 Aligned_cols=213 Identities=19% Similarity=0.169 Sum_probs=128.6
Q ss_pred HHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe--cCCCC-
Q psy2902 224 KDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST--NGDTF- 296 (945)
Q Consensus 224 ~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~--~~~~~- 296 (945)
.++|+..|| +++....+..||+++.+... .+ .+++-+|.+++-..+..-...... +..... .+...
T Consensus 225 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~g~~~---~g--~~~~s~GTs~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~ 297 (508)
T 3ifr_A 225 AEAAALTGLPTGLPVYGGAADHIASALAAGITR---PG--DVLLKFGGAGDIIVASATAKSDPR--LYLDYHLVPGLYAP 297 (508)
T ss_dssp HHHHHHHCCCTTCEEECCEEHHHHHHHHTTCCS---TT--EEEEEESSSEEEEECBSCCCCBTT--BBCCBCSSTTCBCC
T ss_pred HHHHHHhCCCCCCeEEEECchHHHHHHhCCCCC---CC--cEEEEechhhhheeeCCCcccCCC--cceeeeecCCceEE
Confidence 467777776 45667889999999887643 22 344456666554443321101111 111111 11111
Q ss_pred CchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEE
Q psy2902 297 LGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLN 367 (945)
Q Consensus 297 lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~ 367 (945)
.|+..--...++|+++.|.. .+. + ..+..|.+.+++. .......+.+|++... .+...+++
T Consensus 298 ~g~~~~~G~~~~W~~~~~~~-~~~----~-~~~~~l~~~a~~~----~~~~~gl~flP~~~Ger~P~~d~~arg~~~Gl~ 367 (508)
T 3ifr_A 298 NGCMAATGSALNWLAKLLAP-EAG----E-AAHAQLDALAAEV----PAGADGLVCLPYFLGEKTPIHDPFASGTFTGLS 367 (508)
T ss_dssp EEEESSSHHHHHHHHHHHST-TCT----T-HHHHHHHHHHHTS----CTTGGGCEEECCTTCCC----CCCCCCEEESCC
T ss_pred echhhhhHHHHHHHHHHHhh-cCC----C-CCHHHHHHHHhcC----CCCCCCeEEecCCCCCCCCCCCCCcCEEEECCC
Confidence 13333334557788887740 111 0 1244444444432 3345556777765311 11112334
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHH
Q psy2902 368 LKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAI 447 (945)
Q Consensus 368 ~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~ 447 (945)
...++.+|-+.+-+.+......+.+.|++.+.+ ++.|.++||+++++.|.+++++.||.++..... .++.|+|||+
T Consensus 368 ~~~~~~~l~rAvlEgia~~~~~~~~~l~~~g~~---~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~~~-~e~~alGaA~ 443 (508)
T 3ifr_A 368 LSHTRGHLWRALLEAVALAFRHHVAVLDDIGHA---PQRFFASDGGTRSRVWMGIMADVLQRPVQLLAN-PLGSAVGAAW 443 (508)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---CCEEEEESGGGGCHHHHHHHHHHHTSCEEEEEC-CSTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCEEEEeCCcccCHHHHHHHHHHhCCeEEecCC-CCchHHHHHH
Confidence 456899988877777766666666777766543 689999999999999999999999999876543 5689999999
Q ss_pred hhhhccCCCC
Q psy2902 448 QGSVLSGDRK 457 (945)
Q Consensus 448 ~a~~~~~~~~ 457 (945)
.|+...|..+
T Consensus 444 lA~~a~G~~~ 453 (508)
T 3ifr_A 444 VAAIGGGDDL 453 (508)
T ss_dssp HHHHHTCSSC
T ss_pred HHHHHhCCCC
Confidence 9998777443
|
| >1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 | Back alignment and structure |
|---|
Probab=99.08 E-value=9.3e-10 Score=122.16 Aligned_cols=197 Identities=20% Similarity=0.154 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHc-CC--ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCC
Q psy2902 219 QRQATKDAGRIA-GL--EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDT 295 (945)
Q Consensus 219 qr~~l~~Aa~~A-Gl--~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~ 295 (945)
+-+.+.++.+.+ || ++-. .||.||+++++.+. ..+-.+.++|+||||||++++. .+.........
T Consensus 371 ~m~NI~~~Ver~~gL~veV~g--~ep~AA~laaLTed--E~elGvaiIDmGgGTTd~sVf~-----~g~lv~a~~ip--- 438 (607)
T 1nbw_A 371 QMQVIARELSARLQTEVVVGG--VEANMAIAGALTTP--GCAAPLAILDLGAGSTDAAIVN-----AEGQITAVHLA--- 438 (607)
T ss_dssp CSCCHHHHHHHHHTSEEEECS--CHHHHHHHHHTTST--TCCSSEEEEEECSSEEEEEEEC-----SSSCEEEEEEE---
T ss_pred HHHHHHHHHHhccCCcceecc--ccHHHhhhhhcCCC--CCcCCeEEEEeCCCcceEEEEc-----CCcEEEEEEec---
Confidence 456778888888 99 5544 99999999998877 5677789999999999999996 33333333333
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCc----------ceeeee--ceeeccCCCC
Q psy2902 296 FLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSK----------QTEINE--PYIAMSNGAP 363 (945)
Q Consensus 296 ~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~----------~~~i~i--~~~~~~~~~~ 363 (945)
.||++++..+..-|.-. + ...||++|. ..... +..+.+ +.+.......
T Consensus 439 -~gG~~VT~DIA~~Lg~~-----------d-------~~~AErIK~-YG~A~~e~lf~~~dede~Iev~~~~lgp~~~~R 498 (607)
T 1nbw_A 439 -GAGNMVSLLIKTELGLE-----------D-------LSLAEAIKK-YPLAKVESLFSIRHENGAVEFFREALSPAVFAK 498 (607)
T ss_dssp -CCHHHHHHHHHHHHTCS-----------C-------HHHHHHHHH-SCEEEECSSSEEEETTSCEEECSSCCCGGGTTC
T ss_pred -cchHHHHHHHHHHhCCC-----------C-------HHHHHHhcc-cCceeecccccccCCCCeEEEecCCCCcceeee
Confidence 49999998887543211 0 457899998 64321 223333 3332111000
Q ss_pred -----eEEEEEEcHHH--HHHHHHHHHHHHHHH--HHHHHHHcCCC-----CCCCCcEEEecCccccHHHHHHHHHHhCC
Q psy2902 364 -----VHLNLKITRAK--LELLVDELITRTIEP--CRIAIKDAGIK-----VSDINDIILVGGMTRMPKVQEKVKEFFGK 429 (945)
Q Consensus 364 -----~~~~~~itr~~--~e~~~~~~i~~i~~~--i~~~l~~~~~~-----~~~i~~ViLvGG~s~~p~v~~~l~~~fg~ 429 (945)
...-..| +.. +|+ ++-+-+++.+. +..+|+..+.. ..+|..|+|+||+|.++.+.++.++.|+.
T Consensus 499 ~~~~~~~~L~~I-~~R~~vEE-lelVR~~ak~~vfv~n~Lralg~~~~~g~~r~i~~VVLTGGsSql~gI~elA~~iL~~ 576 (607)
T 1nbw_A 499 VVYIKEGELVPI-DNASPLEK-IRLVRRQAKEKVFVTNCLRALRQVSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSH 576 (607)
T ss_dssp EEEEETTEEEEE-CCSSCHHH-HHHHHHHHHHHHHHHHHHHHHSSSSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHT
T ss_pred eecccccceeee-CCCcchHH-HHHHHHHHhhhhhhHHHHHhcCCcccCCcccccCCEEEeCchhhcccHHHHHHHHhCc
Confidence 0112244 555 666 55544444433 45557766553 34678999999999999999999999976
Q ss_pred -CCC-------CCCCCCchhhhhHHHhh
Q psy2902 430 -DPR-------RDINPDEAVAVGAAIQG 449 (945)
Q Consensus 430 -~~~-------~~~~p~~avA~GAa~~a 449 (945)
++. ....|..|+|.|.+++.
T Consensus 577 ~~VRiGrP~~~g~~gP~fAtAvGLlly~ 604 (607)
T 1nbw_A 577 YGVVAGQGNIRGTEGPRNAVATGLLLAG 604 (607)
T ss_dssp TTCEEEECCGGGTSCSCCHHHHHHHHHH
T ss_pred CCeEEecCCccccCCchHHHHHHHHHhh
Confidence 442 24589999999999765
|
| >3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-10 Score=134.87 Aligned_cols=210 Identities=18% Similarity=0.148 Sum_probs=122.1
Q ss_pred HHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeec-CCceEEEEEecCCC-----CCchH
Q psy2902 227 GRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVD-GEKQFEVLSTNGDT-----FLGGE 300 (945)
Q Consensus 227 a~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~-~~~~~~vl~~~~~~-----~lGG~ 300 (945)
+...|+++.....+..||+++.+.... +. +.+-+|.+++-.....-.... .............. ..|+.
T Consensus 232 ~~~~gipV~~g~gD~~aa~~G~g~~~~---g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~eg~~ 306 (526)
T 3ezw_A 232 KGGTRIPISGIAGDQQAALFGQLCVKE---GM--AKNTYGTGCFMLMNTGEKAVKSENGLLTTIACGPTGEVNYALEGAV 306 (526)
T ss_dssp TTSCCEEEEEEEEHHHHHHHHTTCCST---TC--EEEEESSSEEEEEECTTSCCCCSSSCEEEEEECTTSCEEEEEEEEE
T ss_pred hcCCCCcEEEEcchHHHHhhhcccccc---ce--eEEEeccCeeEecccCCccccccccceeeeeeccCCcceeeeHHHH
Confidence 344677877788899999998876542 33 233355554332221100000 11122221111100 01333
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeEEEEEEc
Q psy2902 301 DFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVHLNLKIT 371 (945)
Q Consensus 301 ~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~~~~~it 371 (945)
......++|+++.+.... ..... +.+.. ........+.+|++.... +...+++...+
T Consensus 307 ~~~G~~~~Wl~~~~~~~~---~~~~~----------~~~~~-~~~~~~gl~~lP~~~G~r~P~~d~~arG~~~Glt~~~~ 372 (526)
T 3ezw_A 307 FMAGASIQWLRDEMKLIN---DAYDS----------EYFAT-KVQNTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVN 372 (526)
T ss_dssp SCSHHHHHHHHHTSCCCC---SSSCH----------HHHHT-TSSSCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCC
T ss_pred HHHHHHHHHHHHHhcccc---chhHH----------HHHHh-ccCCCCCeEEeCCCCCCCCCCCCcccCeEEecCCCCCC
Confidence 333456788887764211 11111 11111 112334456677654111 11235556778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 372 RAKLELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 372 r~~~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
|.++.+++-+.+..-...+.+.|++ .+.+ ++.|.++||+|++++|.|++++.||.++.++ ...|+.|+|||+.|+
T Consensus 373 ~~~i~RAvlEgia~~~r~~le~l~~~~g~~---~~~i~v~GGgaks~~~~Qi~ADvlg~pV~~~-~~~E~~alGAA~lA~ 448 (526)
T 3ezw_A 373 ANHIIRATLESIAYQTRDVLEAMQADSGIR---LHALRVDGGAVANNFLMQFQSDILGTRVERP-EVREVTALGAAYLAG 448 (526)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CCEEEEECchhhCHHHHHHHHHHHCCEEEeC-CCCchHHHHHHHHHH
Confidence 9999887777666666666666653 5654 6899999999999999999999999998754 456899999999999
Q ss_pred hccCCCCce
Q psy2902 451 VLSGDRKDL 459 (945)
Q Consensus 451 ~~~~~~~~~ 459 (945)
...|..+++
T Consensus 449 ~a~G~~~~~ 457 (526)
T 3ezw_A 449 LAVGFWQNL 457 (526)
T ss_dssp HHTTSSSCG
T ss_pred HHhCCCCCH
Confidence 888854443
|
| >3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} | Back alignment and structure |
|---|
Probab=98.99 E-value=2.6e-10 Score=132.36 Aligned_cols=201 Identities=21% Similarity=0.203 Sum_probs=120.0
Q ss_pred HHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCC------
Q psy2902 225 DAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGD------ 294 (945)
Q Consensus 225 ~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~------ 294 (945)
++|+..|| +++....+..||+++.+ .. .+ .+++-+|.+++-..+..-......+.+.......+
T Consensus 255 ~~A~~~Gl~~g~pV~~g~~D~~aa~lG~g-~~---~g--~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 328 (515)
T 3i8b_A 255 PAIAGKNVEGGCLLAPGGGDNAMASLGLG-MA---VG--DVSISLGTSGVAAAISENPTYDLTGAVSGFADCTGHYLPLA 328 (515)
T ss_dssp TTTTTTTSTTCCEECCCEEHHHHHHHHTT-CC---TT--EEEEEESSSEEEEECBSSCCCCTTSCSEEEECSSSSEEEEE
T ss_pred HHHHHhCCCCCCeEEEECchHHHHHhhCC-CC---CC--cEEEEechhhhhhcccCccccCCCCcEEeeecCCCCEEEee
Confidence 34444454 56677899999999987 32 23 34445777665543322111111122221111111
Q ss_pred -CCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC--------CCCeE
Q psy2902 295 -TFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN--------GAPVH 365 (945)
Q Consensus 295 -~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~--------~~~~~ 365 (945)
...||. +++|+++.+. . + +..|.+.++++ .......+.+|++.... +...+
T Consensus 329 ~~~~gg~-----~l~w~~~~~~----~----~---~~~l~~~a~~~----~~g~~gl~~lP~~~Ger~P~~~~arg~~~G 388 (515)
T 3i8b_A 329 CTINGSR-----ILDAGRAALG----V----D---YDELAKLAFAS----KPGANGITLVPYFDGERTPNRPNATATFSG 388 (515)
T ss_dssp EESCSTH-----HHHHHHHHHT----C----C---HHHHHHHHHHS----CTTGGGCEEECCTTCBTTTTBTTCCCEEES
T ss_pred ecccHHH-----HHHHHHHHhC----C----C---HHHHHHHHHhC----CCCCCCeEEecCCCCCcCCCCcCcceEEec
Confidence 122443 4577776653 1 1 33444444433 33344556666653211 11122
Q ss_pred EEEEE-cHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhh
Q psy2902 366 LNLKI-TRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVG 444 (945)
Q Consensus 366 ~~~~i-tr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~G 444 (945)
++... ++.++.+.+-+.+......+.+.|++.+. .++.|+++||+++++.|.+++++.||.++... .+.++.|+|
T Consensus 389 l~~~~~~~~~l~RAvlEgia~~~r~~l~~l~~~g~---~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alG 464 (515)
T 3i8b_A 389 MTLANTTRENLARAFVEGLLCSQRDCLELIRSLGA---SITRILLIGGGAKSEAIRTLAPSILGMDVTRP-ATDEYVAIG 464 (515)
T ss_dssp CCTTTCSHHHHHHHHHHHHHHHHHHHHHHHHHTTC---CCCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-CCCCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEECchhcCHHHHHHHHHHhCCceEec-CCcccHHHH
Confidence 33334 78888877776666666666667777654 36899999999999999999999999998753 457799999
Q ss_pred HHHhhhhccCC
Q psy2902 445 AAIQGSVLSGD 455 (945)
Q Consensus 445 Aa~~a~~~~~~ 455 (945)
||++|+...+.
T Consensus 465 AA~lA~~a~G~ 475 (515)
T 3i8b_A 465 AARQAAWVLSG 475 (515)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHcCC
Confidence 99999877664
|
| >3agx_A DNAJ homolog subfamily B member 1; chaperone; 1.85A {Homo sapiens} PDB: 3agy_A 3agz_A 2qld_A | Back alignment and structure |
|---|
Probab=98.93 E-value=2.9e-09 Score=104.82 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=93.5
Q ss_pred CCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcc--cCCCCCCCceEeEeeceeeeeecCCCCCC
Q psy2902 686 GSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPI--SCFTCSGQGQVRMQQGFFSIQQTCPKCQG 763 (945)
Q Consensus 686 ~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~--~C~~C~G~G~~~~~~~~~~~~~~C~~C~G 763 (945)
++...++.++|++.|.+............ .|+|.|........ .=|.=--.|....-.| ..+.-+. ..
T Consensus 3 ~d~~~~l~islee~~~G~~k~i~i~~~c~------~c~G~g~~~~~~~l~V~Ip~G~~~G~~ir~~G---~G~~~~~-g~ 72 (181)
T 3agx_A 3 PPVTHDLRVSLEEIYSGCTKKMKISHKRL------NPDGKSIRNEDKILTIEVKKGWKEGTKITFPK---EGDQTSN-NI 72 (181)
T ss_dssp ---CEEEEECHHHHHHCEEEEEEEEEEEE------CTTSSCEEEEEEEEEEEECTTCCTTCEEEETT---CSCCCSS-SC
T ss_pred CCEEEEEEEEHHHhcCCcEEEEEEecccC------CCCCceEEEEeEEEEEEECCCccCCcEEEEee---ccccCCC-CC
Confidence 35668899999999999998888776665 38998875432111 0000011122111000 0000010 11
Q ss_pred ce------EEeecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCC-CCCC
Q psy2902 764 AG------KVIPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLN-GGSN 816 (945)
Q Consensus 764 ~g------~~~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~-~~~~ 816 (945)
.| .+.+|+.|+|+|.++..+ .+.+.|++|+|+++|++++++|+|||..+ ++.+
T Consensus 73 ~GDl~v~i~~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~~~i~i~~~t~~g~~~rl~g~Gmp~~~~~~~~ 152 (181)
T 3agx_A 73 PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKR 152 (181)
T ss_dssp CCCEEEEEEECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTSCEEEEEECSCCCTTCEEEETTCSCBCSSSTTSB
T ss_pred cccEEEEEEEeccccceeeCCcEEEEEEcCHHHHhCCCEEEeECCCCCEEEEECCCccCCCcEEEECCcCCCcCCCCCCc
Confidence 22 147899999999655444 23568999999999999999999999765 3568
Q ss_pred ccEEEEEEEecCCcccccCCCce
Q psy2902 817 GNLYIEIHIKPHKVFERDGDDLH 839 (945)
Q Consensus 817 Gdl~i~i~v~~~~~~~r~g~dl~ 839 (945)
|||||+|+|..|..++.++.+++
T Consensus 153 GDL~V~~~V~~P~~ls~~q~~~l 175 (181)
T 3agx_A 153 GDLIIEFEVIFPERIPQTSRTVL 175 (181)
T ss_dssp CCEEEEEEEECCSCCCHHHHHHH
T ss_pred CCEEEEEEEECCCCCCHHHHHHH
Confidence 99999999999998887765543
|
| >3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.7e-09 Score=122.66 Aligned_cols=228 Identities=17% Similarity=0.148 Sum_probs=123.1
Q ss_pred HHHHHHHcCC----ccceecchhHHHHHHh-ccCCCCCCCc-----eEEEEEeCCcceEEEEEEEEeecCCceEE-EEEe
Q psy2902 223 TKDAGRIAGL----EVKRIINEPTAAALAF-GLDKSGKSDR-----NIVVYDLGGGTFDVSIIEIADVDGEKQFE-VLST 291 (945)
Q Consensus 223 l~~Aa~~AGl----~~v~li~Ep~AAAl~~-~~~~~~~~~~-----~vlVvD~GggT~dvsv~~~~~~~~~~~~~-vl~~ 291 (945)
..++|+..|| +++....+..|++++. +... .+++ ..+++-+|.+++-..+..- .....+... ....
T Consensus 236 t~~~A~~~GL~~g~pV~~g~gD~~aa~lg~~G~~~--~~G~~~~~~~~~~~~~GTs~~~~~~~~~-~~~~~~~~~~~~~~ 312 (554)
T 3l0q_A 236 SQRAASEMGLIPGTAVSVSIIDAHAGTIGILGASG--VTGENANFDRRIALIGGTSTAHMAMSRS-AHFISGIWGPYYSA 312 (554)
T ss_dssp CHHHHHHHTCCTTCEEBCCEEHHHHHHHHHTTCCC--TTSCCCCTTTEEEEECSSSEEEEEEESS-CCCCTTSEEEEETS
T ss_pred CHHHHHHhCCCCCCeEEEeChHHHhHHhhcccccc--CCCccccccceEEEEecchheeeeecCC-ccccCCcceeeccc
Confidence 4566777666 4666778889998875 4431 1221 1344446766544433221 111111111 1100
Q ss_pred --cCCCC-CchHHHHHHHHHHHHHHHHHH---hCCCCccCHHHHHHHHHHHHHHHHHhcC---Ccceeeeeceeecc---
Q psy2902 292 --NGDTF-LGGEDFDQRIIDYILDEFNKI---NGIDLRKDSIALQRIKASAERAKIELSS---SKQTEINEPYIAMS--- 359 (945)
Q Consensus 292 --~~~~~-lGG~~iD~~l~~~l~~~~~~~---~~~~~~~~~~~~~~L~~~~e~~K~~Ls~---~~~~~i~i~~~~~~--- 359 (945)
.+... .|+.......++|+++.+... ...........+..|.+.++++...... .....+.+|++...
T Consensus 313 ~~~~~~~~~g~~~~~G~~~~W~~~~~~~~~~~~~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gl~flP~~~Ger~P 392 (554)
T 3l0q_A 313 ILPEYWLNEGGQSATGALIDHIIQSHPCYPALLEQAKNKGETIYEALNYILRQMAGEPENIAFLTNDIHMLPYFHGNRSP 392 (554)
T ss_dssp SSTTCEEEEEEESCSHHHHHHHHHTSTTHHHHHHHHHHTTCCHHHHHHHHHHHHHSSGGGGGGGGTTCCEECCTTCBCSS
T ss_pred ccCCceEecchhhhhHHHHHHHHHhcccchHHHHHHHhcCCCHHHHHHHHHHhcCCCCCccccccCceEEcccccCCCCC
Confidence 11011 133333344567776654210 0000000011344455555554321111 13445667765421
Q ss_pred ------CCCCeEEEEEEcHHHHH---HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCC
Q psy2902 360 ------NGAPVHLNLKITRAKLE---LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKD 430 (945)
Q Consensus 360 ------~~~~~~~~~~itr~~~e---~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~ 430 (945)
.+...+++...+|++|- +.+-+.+......+.+.|++.+. .++.|.++||+|++++|.|++++.||.+
T Consensus 393 ~~d~~arg~~~Gl~~~~~~~~l~r~~rAvlEgia~~~r~~~e~l~~~g~---~~~~i~~~GG~aks~~~~Qi~ADv~g~p 469 (554)
T 3l0q_A 393 RANPNLTGIITGLKLSTTPEDMALRYLATIQALALGTRHIIETMNQNGY---NIDTMMASGGGTKNPIFVQEHANATGCA 469 (554)
T ss_dssp SCBTTCCCEECSCCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CCCEEEEESGGGGCHHHHHHHHHHHCCE
T ss_pred CCCCCCcEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCEEEEeCccccCHHHHHHHHHhhCCe
Confidence 11223455677899994 44444444444445555655443 4789999999999999999999999999
Q ss_pred CCCCCCCCchhhhhHHHhhhhccCCCC
Q psy2902 431 PRRDINPDEAVAVGAAIQGSVLSGDRK 457 (945)
Q Consensus 431 ~~~~~~p~~avA~GAa~~a~~~~~~~~ 457 (945)
+..+. ..++.|+|||++|+...|..+
T Consensus 470 V~~~~-~~e~~alGAA~lA~~a~G~~~ 495 (554)
T 3l0q_A 470 MLLPE-ESEAMLLGSAMMGTVAAGVFE 495 (554)
T ss_dssp EEEES-CSCHHHHHHHHHHHHHTTSSS
T ss_pred EEecC-CCcchHHHHHHHHHHHcCCcC
Confidence 87543 567999999999998777543
|
| >4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-09 Score=127.79 Aligned_cols=209 Identities=15% Similarity=0.104 Sum_probs=121.1
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEE-eecCCceEEEEEec-CC----CCCchHHH
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIA-DVDGEKQFEVLSTN-GD----TFLGGEDF 302 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~-~~~~~~~~~vl~~~-~~----~~lGG~~i 302 (945)
.+|++++....+..||+++.+... .+. +++-+|.+++-.....-. .....+.+..++.. .+ ...|+...
T Consensus 255 ~~g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 329 (520)
T 4e1j_A 255 GAAIPILGVAGDQQAATIGQACFK---PGM--LKSTYGTGCFALLNTGKDMVRSKNRLLTTIAYRLDGETTYALEGSIFV 329 (520)
T ss_dssp TSCCBEEEECCHHHHHHHHTTCCS---TTC--EEEEESSSEEEEEECTTCCCCCSSSCEEEEEEEETTEEEEEEEEEESC
T ss_pred CCCCeEEEECCcHHHHHHhCCCCC---CCc--EEEEecCchheEEecCCccccCCCceeeEEeEecCCCceEEEcchHhh
Confidence 368888888999999999987644 233 333456654333322000 01112222211111 00 01123333
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEcHH
Q psy2902 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKITRA 373 (945)
Q Consensus 303 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~itr~ 373 (945)
....++|+++.+... . .+..|.+.++.+ ......+.+|++... .+...+++...+|.
T Consensus 330 ~G~~~~W~~~~~~~~------~---~~~~l~~~a~~~-----~~~~gl~~lP~l~Ger~P~~d~~arg~~~Gl~~~~~~~ 395 (520)
T 4e1j_A 330 AGAAVQWLRDGLKVI------K---AAPDTGSLAESA-----DPSQEVYLVPAFTGLGAPHWDPDARGAIFGMTRNTGPA 395 (520)
T ss_dssp SHHHHHHHHHTTCCC--------------CHHHHHTS-----CTTCCCEEECCTTCBCTTTCBTTCCCEEEEECTTCCHH
T ss_pred HHHHHHHHHHHcCCc------c---cHHHHHHHHhcC-----CCCCcEEEEcCccCCCCCCCCCCCCEEEecccCCCCHH
Confidence 334678888776321 0 122233333222 234456777775311 12223555567899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 374 KLELLVDELITRTIEPCRIAIKDAGI-KVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 374 ~~e~~~~~~i~~i~~~i~~~l~~~~~-~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
++-+.+-+.+..-...+.+.|++.+. .. .++.|.++||++++++|.|++++.||.++..+ .+.++.|+|||++|+..
T Consensus 396 ~l~RAvlEgia~~~r~~l~~l~~~~~~~g-~~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~-~~~e~~alGAA~lA~~a 473 (520)
T 4e1j_A 396 EFARAALEAVCYQTRDLLEAMHKDWRRNG-NDTVLRVDGGMVASDWTMQRLSDLLDAPVDRP-VILETTALGVAWLAGSR 473 (520)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC------CCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCC-CcceEEEeCccccCHHHHHHHHHHhCCeEEec-CCCccHHHHHHHHHHHH
Confidence 98887777666666666666665410 01 46899999999999999999999999998754 45779999999999988
Q ss_pred cCCCCc
Q psy2902 453 SGDRKD 458 (945)
Q Consensus 453 ~~~~~~ 458 (945)
.|..++
T Consensus 474 ~G~~~~ 479 (520)
T 4e1j_A 474 AGVWPN 479 (520)
T ss_dssp HTSSCC
T ss_pred cCCcCC
Confidence 775443
|
| >3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O | Back alignment and structure |
|---|
Probab=98.87 E-value=1.6e-09 Score=125.83 Aligned_cols=206 Identities=16% Similarity=0.147 Sum_probs=121.1
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEee-cCCceEEEEEec-CC---C-CCchHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV-DGEKQFEVLSTN-GD---T-FLGGEDFD 303 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~-~~~~~~~vl~~~-~~---~-~lGG~~iD 303 (945)
+|++++....+..||+++.+... .+. +++-+|.+++-.....-... ...+.+...+.. .+ . ..|+....
T Consensus 236 ~g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~ 310 (506)
T 3h3n_X 236 SEVPIAGMAGDQQAALFGQMAFE---KGM--IKNTYGTGAFIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVA 310 (506)
T ss_dssp CCCEEEEEEEHHHHHHHHTTCCS---TTC--EEEEESSSEEEEEEEETCCCSCCTTSEEEEEEEETTEEEEEEEEEECCS
T ss_pred CCCeEEEECCcHHHHHHhCCCCC---CCc--EEEEecchheeeeecCCccccCCCceEEEeeeecCCCCEEEEecchhhH
Confidence 67888888899999999987644 233 33446665543322221111 122222211111 10 0 01222222
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc---------CCCCeEEEEEEcHHH
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS---------NGAPVHLNLKITRAK 374 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~---------~~~~~~~~~~itr~~ 374 (945)
..+++|+++.+... .+ +..|.+.++.+ .. ....+.+|++... .+...+++...++.+
T Consensus 311 G~~~~W~~~~~~~~------~~---~~~l~~~a~~~----~~-~~gl~~~P~~~Ger~P~~d~~arg~~~Gl~~~~~~~~ 376 (506)
T 3h3n_X 311 GSAIQWLRDGLRMI------ET---SPQSEELAAKA----KG-DNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKED 376 (506)
T ss_dssp SHHHHHHHHTSCCC------SS---TTHHHHHHTTC----CS-CSCCEEECCTTCBCTTTCBTTCCCEEECCCTTCCHHH
T ss_pred HHHHHHHHHHcCCC------Cc---HHHHHHHHhcC----CC-CCceEEeccccCCCCCccCCCCCEEEEccCCCCCHHH
Confidence 23678888766321 01 11222222221 22 2455677765321 111234445668999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 375 LELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
|-+.+-+.+......+.+.|++ .+.+ ++.|.++||++++++|.+++++.||.++... .+.++.|+|||+.|+...
T Consensus 377 l~RAvlEgia~~~r~~~~~l~~~~g~~---~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alGaA~lA~~a~ 452 (506)
T 3h3n_X 377 FVRATLQAVAYQSKDVIDTMKKDSGID---IPLLKVDGGAAKNDLLMQFQADILDIDVQRA-ANLETTALGAAYLAGLAV 452 (506)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCSC---CCEEEEESGGGGCHHHHHHHHHHHTSEEEEC-SSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---CCEEEEecccccCHHHHHHHHHHhCCeEEec-CCCcchhHHHHHHHHHHh
Confidence 8887777666666666666665 4543 6899999999999999999999999998653 467899999999999877
Q ss_pred CCCCc
Q psy2902 454 GDRKD 458 (945)
Q Consensus 454 ~~~~~ 458 (945)
|..++
T Consensus 453 G~~~~ 457 (506)
T 3h3n_X 453 GFWKD 457 (506)
T ss_dssp TSSCS
T ss_pred CccCC
Confidence 75443
|
| >3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-09 Score=127.12 Aligned_cols=206 Identities=15% Similarity=0.151 Sum_probs=119.5
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEee-cCCceEEEEEec-CC---C-CCchHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADV-DGEKQFEVLSTN-GD---T-FLGGEDFD 303 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~-~~~~~~~vl~~~-~~---~-~lGG~~iD 303 (945)
+|++++....+..||+++.+... .+. +++-+|.+++-.....-... ...+.+...+.. .+ . ..|+....
T Consensus 237 ~g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 311 (501)
T 3g25_A 237 QEVPIAGVAGDQQAALFGQACFE---RGD--VKNTYGTGGFMLMNTGDKAVKSESGLLTTIAYGIDGKVNYALEGSIFVS 311 (501)
T ss_dssp CCCEEEEEEEHHHHHHHHTTCCS---TTC--EEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCS
T ss_pred CCCeEEEECccHHHHHHhCCCCC---CCc--EEEEccchhheeeecCCccccCCCCeEEEeeEecCCccEEEEecccccH
Confidence 68888888899999999887544 233 33345655432222110000 112222211111 10 0 01222222
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeEEEEEEcHHH
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVHLNLKITRAK 374 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~~~~~itr~~ 374 (945)
..+++|+++.+... .+ +..|.+.++.+ .. ....+.+|++.... +...+++...++.+
T Consensus 312 G~~~~W~~~~~~~~------~~---~~~l~~~a~~~----~~-~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~ 377 (501)
T 3g25_A 312 GSAIQWLRDGLRMI------NS---APQSESYATRV----DS-TEGVYVVPAFVGLGTPYWDSEARGAIFGLTRGTEKEH 377 (501)
T ss_dssp THHHHHHHHTSCCC------SS---GGGHHHHHTTS----SC-CTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHH
T ss_pred HHHHHHHHHHcCCC------Cc---HHHHHHHHhhC----CC-CCeEEEecccccCCCCCCCCCCCEEEEccCCCCCHHH
Confidence 23678888766420 01 11222222221 22 24556677654111 11224445568888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 375 LELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
|-+.+-+.+......+.+.|++ .+.+ ++.|.++||++++++|.+++++.||.++... .+.++.|+|||++|+...
T Consensus 378 l~RAvlEgia~~~~~~~~~l~~~~g~~---~~~i~~~GG~aks~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~la~~a~ 453 (501)
T 3g25_A 378 FIRATLESLCYQTRDVMEAMSKDSGID---VQSLRVDGGAVKNNFIMQFQADIVNTSVERP-EIQETTALGAAFLAGLAV 453 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSCC---CSEEEEESGGGGCHHHHHHHHHHHTSEEEEE-SCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEecchhcCHHHHHHHHHHhCCceEec-CCCcchHHHHHHHHHHHh
Confidence 8887777666666666666665 4543 6899999999999999999999999998644 467899999999999887
Q ss_pred CCCCc
Q psy2902 454 GDRKD 458 (945)
Q Consensus 454 ~~~~~ 458 (945)
|..++
T Consensus 454 G~~~~ 458 (501)
T 3g25_A 454 GFWES 458 (501)
T ss_dssp TSSSC
T ss_pred CccCC
Confidence 75443
|
| >3i38_A Putative chaperone DNAJ; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.30A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-09 Score=95.17 Aligned_cols=83 Identities=20% Similarity=0.344 Sum_probs=69.7
Q ss_pred CCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 688 NGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 688 ~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
.|.|+++++.++|.++.+|+++.+...
T Consensus 10 ~G~DL~~~~~Isl~eAl~G~~i~v~tl----------------------------------------------------- 36 (109)
T 3i38_A 10 VGHNLEIVLPLAPWEAALGAKVTVPTL----------------------------------------------------- 36 (109)
T ss_dssp ETTEEEEEEEECHHHHHHCEEEEECCS-----------------------------------------------------
T ss_pred ECCEEEEEEEcCHHHHhCCCEEEEEcC-----------------------------------------------------
Confidence 467999999999999999998776521
Q ss_pred eecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeE
Q psy2902 768 IPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 768 ~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
+| .++|+||+|+++|++++++|+|||. .+ .+|||||+|+|..|..++.++.+++..
T Consensus 37 --------dG--------~~~v~ip~g~~~G~~~rl~G~G~p~-~~-~~GDL~v~~~V~~P~~Ls~~q~~~l~~ 92 (109)
T 3i38_A 37 --------KE--------SILLTVPPGSQAGQRLRIKGKGLVS-KT-HTGDLFAVIKIVMPTKPDEKARELWQQ 92 (109)
T ss_dssp --------SS--------CEEEEECTTCCTTCEEEETTCSCBC-SS-CBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred --------CC--------CEEEeeCCCcCcCeEEEECCccCCC-CC-CCcCEEEEEEEECCCCCCHHHHHHHHH
Confidence 01 4789999999999999999999997 33 799999999999999988777665543
|
| >2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=98.80 E-value=2.1e-09 Score=124.73 Aligned_cols=203 Identities=14% Similarity=0.113 Sum_probs=112.7
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEec-CC----CCCchHHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTN-GD----TFLGGEDFDQ 304 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~-~~----~~lGG~~iD~ 304 (945)
.|++++....+..||+++.+... .+. +++-+|.+++-..+..-......+.+...+.. .+ ...|+...-.
T Consensus 229 ~g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G 303 (497)
T 2zf5_O 229 AEIPVSGDAGDQQAALFGQAAFE---AGM--VKATYGTGSFILVNTDKMVLYSDNLLTTIAWGLNGRVSYALEGSIFVTG 303 (497)
T ss_dssp SCCEEEEEEEHHHHHHHHTTCCS---TTC--EEEEESSSEEEEEEEETCCCCCTTSEEEEEEEETTEEEEEEEEEESCSH
T ss_pred CCCeEEEEccHHHHHHHhCCCCC---CCc--EEEEcchhheeeEECCCCccCCCCcEEEEEEEcCCCCEEEEechhhhHH
Confidence 67888888899999999887644 233 33345555444333221011111222222111 00 0112222223
Q ss_pred HHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeEEEEEEcHHHH
Q psy2902 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVHLNLKITRAKL 375 (945)
Q Consensus 305 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~~~~~itr~~~ 375 (945)
..++|+.+.+.. . .+ +..|.+.++.+ . .....+.+|++.... +...+++...++.++
T Consensus 304 ~~~~w~~~~~~~----~--~~---~~~l~~~a~~~----~-~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l 369 (497)
T 2zf5_O 304 AAVQWLRDGIKI----I--KH---ASETEELATKL----E-SNEGVYFVPAFVGLGAPYWDQFARGIIIGITRGTGREHL 369 (497)
T ss_dssp HHHHHHHHTSCC----C--SC---GGGHHHHHTTS----S-SCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHHH
T ss_pred HHHHHHHHHhCC----C--Cc---HHHHHHHHhhC----C-CCCceEEecCcCCCCCCCCCCCCCEEEEeCCCCCCHHHH
Confidence 346787765531 0 11 11222222221 1 233345566653111 111233445578887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCC
Q psy2902 376 ELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGD 455 (945)
Q Consensus 376 e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~ 455 (945)
-+.+-+.+......+.+.|+..+ .++.|.++||+++++.|.+++++.+|.++..+. +.++.|+|||+.|+...|.
T Consensus 370 ~rAvlEgia~~~~~~l~~l~~~~----~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~-~~e~~alGaA~lA~~~~g~ 444 (497)
T 2zf5_O 370 ARATLEAIAYLTRDVVDEMEKLV----QIKELRVDGGATANDFLMQFQADILNRKVIRPV-VKETTALGAAYLAGLAVDY 444 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTS----CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEES-CSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC----CcceEEEeCccccCHHHHHHHHhhcCCeEEEcC-CCcchHHHHHHHHHHHhCc
Confidence 76655555444444444444332 578999999999999999999999999987544 4669999999999887764
Q ss_pred C
Q psy2902 456 R 456 (945)
Q Consensus 456 ~ 456 (945)
.
T Consensus 445 ~ 445 (497)
T 2zf5_O 445 W 445 (497)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-09 Score=116.25 Aligned_cols=167 Identities=17% Similarity=0.164 Sum_probs=89.1
Q ss_pred cccccccccccccccCCCCCCCCCCCCCCCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCC
Q psy2902 659 ASNFADAFGDIFGDIFGSNRDRDNNNKGSNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFT 738 (945)
Q Consensus 659 ~~~f~d~f~~~F~~~~g~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~ 738 (945)
.+-|+++|+.. +...+..+ ..++.+...++.++|+..+.+..........+.+..-...-. .. ......-|.
T Consensus 118 ~diF~~~Fg~~-g~~~~~~~---~~~g~Dl~~~l~vsleea~~G~~k~i~i~~~v~~g~G~v~~~-~~---~~l~V~IP~ 189 (329)
T 3lz8_A 118 DDIFSSMFGQQ-AHQRRRQH---AARGHDLEIEVAVFLEETLAEQTRTISYNLPVYNVFGMIESE-TP---KTLNVKIPA 189 (329)
T ss_dssp -----------------------CCCCCCEEEEECCCTTGGGSCEEEEEEEEEEECCSCC-CCEE-EE---EEEEEEECT
T ss_pred hhhhHhhhcCc-CCCCCCCC---cCCCCCEEEEEecchhhhhhccceEEEEEEEeecCCeEEEEe-cc---eEEEEeCCC
Confidence 34567778653 22222222 245678889999999999998877666665443211000000 00 000000011
Q ss_pred CCCCceEeEeeceeeeeecCCC--CC-CceE------EeecCCcccCCCceEee---------------eee----EEEE
Q psy2902 739 CSGQGQVRMQQGFFSIQQTCPK--CQ-GAGK------VIPHPCLDCNGIGRIKR---------------NKT----LEVK 790 (945)
Q Consensus 739 C~G~G~~~~~~~~~~~~~~C~~--C~-G~g~------~~~~~c~~c~G~g~~~~---------------~~~----l~v~ 790 (945)
---.|... ++...-.. -+ ..|- +.+|+.|+|.|..+..+ .++ ++|+
T Consensus 190 Gv~~G~~I------rl~G~G~~g~~gg~~GDL~v~I~v~~h~~F~R~G~DL~~~~~Isl~eAllG~~v~VptLdG~v~l~ 263 (329)
T 3lz8_A 190 GVVDGQRI------RLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKESILLT 263 (329)
T ss_dssp TCCTTCEE------EESSCSCCC---CCCCCEEEEECCCCCSSCEEETTEEEEEEEECHHHHHHCEEEEECCSSSCEEEE
T ss_pred CCCCCCEE------EEcccccCCCCCCCCCcEEEEEEEecCCccEEcCCcEEEEEECCHHHHcCCCeEEEECCCCCEEEE
Confidence 11111110 01000000 00 1221 36899999999554444 333 4799
Q ss_pred eecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCcccccCCCceeE
Q psy2902 791 IPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKVFERDGDDLHYE 841 (945)
Q Consensus 791 ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~~~r~g~dl~~~ 841 (945)
||+|+++|++++++|+|||.. +.+|||||+|+|..|+.++.++..++..
T Consensus 264 ip~gt~~g~~~rl~G~GmP~~--~~rGDL~v~~~V~~P~~l~~~q~~~l~~ 312 (329)
T 3lz8_A 264 VPPGSQAGQRLRIKGKGLVSK--THTGDLFAVIKIVMPTKPDEKARELWQQ 312 (329)
T ss_dssp ECTTCCTTCEEEETTCSCBCS--SCBCCEEEEEEECCCSSCCHHHHHHHHH
T ss_pred ECCCCCCCCEEEEcCCCCCCC--CCCCCEEEEEEEECCCCCCHHHHHHHHH
Confidence 999999999999999999965 4689999999999999988777666544
|
| >1xao_A YDJ1, mitochondrial protein import protein MAS5; beta sheets, chaperone; 2.07A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.7e-09 Score=96.49 Aligned_cols=85 Identities=31% Similarity=0.315 Sum_probs=67.0
Q ss_pred CCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 688 NGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 688 ~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
.|.|+++++.+++.++.+|++..+...
T Consensus 5 ~G~DL~~~~~Isl~eAllG~~i~v~tl----------------------------------------------------- 31 (121)
T 1xao_A 5 DGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------- 31 (121)
T ss_dssp ETTEEEEEEEEEHHHHHHCEEEEEECT-----------------------------------------------------
T ss_pred ECCeEEEEEEcCHHHHhCCCEEEEecC-----------------------------------------------------
Confidence 468999999999999999998877521
Q ss_pred eecCCcccCCCceEeeeeeEEEEeecC--CCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCCc--ccccCCCcee
Q psy2902 768 IPHPCLDCNGIGRIKRNKTLEVKIPAG--IENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHKV--FERDGDDLHY 840 (945)
Q Consensus 768 ~~~~c~~c~G~g~~~~~~~l~v~ip~G--~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~~--~~r~g~dl~~ 840 (945)
..+.+.|+||+| +++|++++++|+|||..+++.+|||||+|+|..|.. ++.++.+++.
T Consensus 32 ---------------dG~~~~v~ip~g~v~~~G~~~rl~G~Gmp~~~~~~~GDL~V~~~V~~P~~~~ls~~q~~~l~ 93 (121)
T 1xao_A 32 ---------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKFPENHFTSEENLKKLE 93 (121)
T ss_dssp ---------------TSCEEEEEECTTSCCCTTCEEEETTCSCC------CCCEEEEEEEECCCTTCSCHHHHHHHH
T ss_pred ---------------CCCEEEEEeCCCCeeCCCcEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHH
Confidence 123588999999 999999999999999765447899999999999988 8777755543
|
| >1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 | Back alignment and structure |
|---|
Probab=98.78 E-value=2.2e-07 Score=98.38 Aligned_cols=72 Identities=17% Similarity=0.214 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
+++..+++.+...+.+.++..+. .+.|+++||.+++|.|++.+++.++.++..+.+++.+.|+|||++|...
T Consensus 186 di~~av~e~Va~~i~~~~~~~~~----~~~i~~~GG~a~n~~~~~~~~~~lg~~v~~p~~~~~~~AlGAAl~A~~~ 257 (270)
T 1hux_A 186 DIIAGIHRSVASRVIGLANRVGI----VKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 257 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCC----CSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC----CCeEEEeCccccCHHHHHHHHHHHCCCeEeCCCcchHhHHHHHHHHHHh
Confidence 34444444444444455544322 3689999999999999999999999998888888889999999999753
|
| >2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-08 Score=116.12 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=117.4
Q ss_pred HHHHHHcCC---ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEe-cCCCC--C
Q psy2902 224 KDAGRIAGL---EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLST-NGDTF--L 297 (945)
Q Consensus 224 ~~Aa~~AGl---~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~-~~~~~--l 297 (945)
.++|+..|| +++....+..||+++.+.... +. +++-+|.+++-..+..-........+..... ..+.. .
T Consensus 214 ~~~a~~~Gl~g~pV~~g~~D~~aa~~g~g~~~~---g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 288 (484)
T 2itm_A 214 PEVAKAWGMATVPVVAGGGDNAAGAVGVGMVDA---NQ--AMLSLGTSGVYFAVSEGFLSKPESAVHSFCHALPQRWHLM 288 (484)
T ss_dssp HHHHHHHTSCCCEEECCEEHHHHHHHHHTCCST---TC--EEEEESSSEEEEEECSSCCCCCSSSCEEEECSSTTCEEEE
T ss_pred HHHHHHhCCCCCeEEEEchHHHHHHHhCCCCCC---Cc--EEEEccchheeEEecCCCccCcccceEEeecccCCeeeee
Confidence 356666665 566677899999998876542 33 2333444333222211000111111111111 11111 1
Q ss_pred chHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCC---------CCeEEEE
Q psy2902 298 GGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNG---------APVHLNL 368 (945)
Q Consensus 298 GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~---------~~~~~~~ 368 (945)
|+...-...++|+++.+.. . + +..+.+.+++ ........+.+|++..... ...+++.
T Consensus 289 ~~~~~~G~~~~W~~~~~~~----~---~---~~~~~~~a~~----~~~~~~gl~~lP~~~G~r~P~~~~~a~g~~~Gl~~ 354 (484)
T 2itm_A 289 SVMLSAASCLDWAAKLTGL----S---N---VPALIAAAQQ----ADESAEPVWFLPYLSGERTPHNNPQAKGVFFGLTH 354 (484)
T ss_dssp EEECCHHHHHHHHHHHTTC----C---S---HHHHHHHGGG----CCTTSCCCEEEEEEC--------CCEEEEEEEEET
T ss_pred ehhhhHHHHHHHHHHhcCc----c---c---HHHHHHHHhc----CCCCCCCeEEeCCCCCCCCCCCCCCCceEEEcCCC
Confidence 2332334456777776531 0 1 2223332221 1234455677776642211 1123344
Q ss_pred EEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHh
Q psy2902 369 KITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 369 ~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~ 448 (945)
..++.++-+.+-+.+..-...+.+.|++.+. .++.|.++||+++++.|.+++++.+|.++.....++.+.|+|||+.
T Consensus 355 ~~~~~~~~rAvlEgia~~~~~~~~~l~~~g~---~~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~~~~e~~~alGAA~l 431 (484)
T 2itm_A 355 QHGPNELARAVLEGVGYALADGMDVVHACGI---KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARL 431 (484)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHHHTTTC---CCSCEEEESGGGCCHHHHHHHHHHHCCCEEEESCTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CcceEEEEeccccCHHHHHHHHHHhCCeEEeCCCCCcccHHHHHHH
Confidence 5678888776666555555555556665443 4688999999999999999999999999986655555689999999
Q ss_pred hhhccCCC
Q psy2902 449 GSVLSGDR 456 (945)
Q Consensus 449 a~~~~~~~ 456 (945)
|+...|..
T Consensus 432 A~~~~g~~ 439 (484)
T 2itm_A 432 AQIAANPE 439 (484)
T ss_dssp HHHHHCTT
T ss_pred HHHHcCCc
Confidence 98877643
|
| >4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-07 Score=109.08 Aligned_cols=205 Identities=11% Similarity=0.081 Sum_probs=112.0
Q ss_pred HHHHHHcCC----ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEec--CCCCC
Q psy2902 224 KDAGRIAGL----EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTN--GDTFL 297 (945)
Q Consensus 224 ~~Aa~~AGl----~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~--~~~~l 297 (945)
.++|+..|| +++....+..||+++.+. ..+. +++-+|.+++-..+..-........ ..... ++..+
T Consensus 262 ~~~a~~~Gl~~g~pV~~g~~D~~aa~~g~~~----~~g~--~~~s~GTs~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 333 (538)
T 4bc3_A 262 SYYVQRYGFPPGCKVVAFTGDNPASLAGMRL----EEGD--IAVSLGTSDTLFLWLQEPMPALEGH--IFCNPVDSQHYM 333 (538)
T ss_dssp HHHHHHHCCCTTCEEECCEEHHHHHHHHTTC----CTTC--EEEEESSSEEEEEEESSCCCCSSSE--EEEETTEEEEEE
T ss_pred HHHHHHhCCCCCCeEEEecccHHhhhhcccc----CCCc--EEEEeccchheEEecCCCCCCCCcc--eEEeecCCCCEE
Confidence 466777777 456677888898888742 2333 3345676655544432111111111 11110 00000
Q ss_pred --chHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccCCCCe---E-------
Q psy2902 298 --GGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPV---H------- 365 (945)
Q Consensus 298 --GG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~---~------- 365 (945)
|+..--..+.+|+.+.+.. . .+..|.+.++++ .......+.+|++.... .+. .
T Consensus 334 ~~~~~~~gg~~~~w~~~~~~~-------~---~~~~l~~~a~~~----~~g~~gl~~lp~~~Ger-~P~~~G~~~~~~~~ 398 (538)
T 4bc3_A 334 ALLCFKNGSLMREKIRNESVS-------R---SWSDFSKALQST----EMGNGGNLGFYFDVMEI-TPEIIGRHRFNTEN 398 (538)
T ss_dssp EEEEESSSHHHHHHHHHHHST-------T---CHHHHHHHHHTS----CTTGGGCEEEEESSCCS-SSCCCEEEEECTTS
T ss_pred EeehhhccchHHHHHHHHhcC-------C---CHHHHHHHHhcC----CCCCCCeEEeecCCCCc-CCCCCceeeecccc
Confidence 1111112345777776631 1 133344444333 23344455666643211 110 0
Q ss_pred EEEE-EcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhh
Q psy2902 366 LNLK-ITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVG 444 (945)
Q Consensus 366 ~~~~-itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~G 444 (945)
..++ .++.+|-+.+-+.+.... ...++..+.....++.|.++||++++++|.+++++.||.++... .+.++.|+|
T Consensus 399 ~g~~~~~~~~l~RAvlEgia~~~---r~~~~~l~~~g~~~~~i~~~GGga~s~~~~Qi~ADv~g~pV~~~-~~~e~~alG 474 (538)
T 4bc3_A 399 HKVAAFPGDVEVRALIEGQFMAK---RIHAEGLGYRVMSKTKILATGGASHNREILQVLADVFDAPVYVI-DTANSACVG 474 (538)
T ss_dssp CEESCCCHHHHHHHHHHHHHHHH---HHHHHHTTCCCCTTCCEEEEEGGGGCHHHHHHHHHHHTSCEEEC-CCTTHHHHH
T ss_pred ccccCCCHHHHHHHHHHHHHHHH---HHHHHHhhhcCCCCCeEEEEcchhcCHHHHHHHHHHhCCceEec-CCCCchHHH
Confidence 0111 467776665555444333 33444433333457899999999999999999999999998754 457899999
Q ss_pred HHHhhhhccCC
Q psy2902 445 AAIQGSVLSGD 455 (945)
Q Consensus 445 Aa~~a~~~~~~ 455 (945)
||+.|+...|.
T Consensus 475 aA~lA~~a~G~ 485 (538)
T 4bc3_A 475 SAYRAFHGLAG 485 (538)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhCc
Confidence 99999876653
|
| >2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} | Back alignment and structure |
|---|
Probab=98.62 E-value=2.6e-08 Score=115.71 Aligned_cols=202 Identities=16% Similarity=0.177 Sum_probs=115.1
Q ss_pred CccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE-EeecCCceEEEEEecC-C-----CCCchHHHHH
Q psy2902 232 LEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI-ADVDGEKQFEVLSTNG-D-----TFLGGEDFDQ 304 (945)
Q Consensus 232 l~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~-~~~~~~~~~~vl~~~~-~-----~~lGG~~iD~ 304 (945)
++++....+..||+++.+... .+ .+++-+|.+++-..+..- ......+.+...+..- + ...|+...-.
T Consensus 237 ~pV~~g~~D~~aa~~g~g~~~---~g--~~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~G 311 (504)
T 2d4w_A 237 VPIAGILGDQQAATFGQACFE---VG--QAKNTYGTGNFLLLNTGTEKVMSKNGLLTTVCYKIGDAPAVYALEGSIAVTG 311 (504)
T ss_dssp CEEEEEEEHHHHHHHHTTCCS---TT--EEEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCTTSCCEEEEEEEESCSH
T ss_pred CeEEEECCcHHHHHhhCCCCC---CC--cEEEEcchhheeeeecCCccccCCCCcEEEEEEEcCCCCceEEEcchhhhHH
Confidence 556666778889999887543 12 244456666554443310 0011123333332211 1 0112222233
Q ss_pred HHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeEEEEEEcHHHH
Q psy2902 305 RIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVHLNLKITRAKL 375 (945)
Q Consensus 305 ~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~~~~~itr~~~ 375 (945)
..++|+++.+.... + +..|.+.++++ . .....+.+|++.... +...+++...++.++
T Consensus 312 ~~~~W~~~~~~~~~--~-------~~~l~~~a~~~----~-~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~l 377 (504)
T 2d4w_A 312 SLVQWLRDNLGMFE--D-------APDVEWLAGKV----Q-DNGGAYFVPAFSGLFAPYWRPDARGALVGLTRYVNRNHI 377 (504)
T ss_dssp HHHHHHHHTTCTTT--T-------CSCTHHHHTTS----S-SCTTCEEECTTCCCSTTTCCCCSCEEEEEECSSCCHHHH
T ss_pred HHHHHHHHHhCCCC--C-------HHHHHHHHhhC----C-CCCCEEEecCCCCCCCCCCCCCCCEEEEeCCCCCCHHHH
Confidence 46778877653210 0 11122222221 1 223345566653111 112234455688888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccC
Q psy2902 376 ELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 376 e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~ 454 (945)
-+.+-+.+......+.+.|++ .+.. ++.|.++||+++++.|.+++++.+|.++... .+.++.|+|||+.|+...|
T Consensus 378 ~rAvlEgia~~~~~~~~~l~~~~g~~---~~~i~~~GG~a~s~~~~Qi~Adv~g~pV~~~-~~~e~~alGaA~lA~~~~G 453 (504)
T 2d4w_A 378 ARAALEATAFQSREVVDAMNADSGVD---LTELRVDGGMVANELLMQFQADQLGVDVVRP-KVAETTALGAAYAAGIAVG 453 (504)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCC---CCEEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCC---cceEEEeCCcccCHHHHHHHHHHhCCeEEeC-CCCcchHHHHHHHHHhhcC
Confidence 877666665555555556654 4543 5789999999999999999999999998754 4577999999999988776
Q ss_pred CC
Q psy2902 455 DR 456 (945)
Q Consensus 455 ~~ 456 (945)
..
T Consensus 454 ~~ 455 (504)
T 2d4w_A 454 FW 455 (504)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5.3e-08 Score=113.13 Aligned_cols=203 Identities=13% Similarity=0.114 Sum_probs=116.9
Q ss_pred CCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE-EeecCCceEEEEEecC-C-----C-CCchHHH
Q psy2902 231 GLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI-ADVDGEKQFEVLSTNG-D-----T-FLGGEDF 302 (945)
Q Consensus 231 Gl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~-~~~~~~~~~~vl~~~~-~-----~-~lGG~~i 302 (945)
|++++....+..||+++.+... .+. +++-+|.+++-..+..- ......+.+...+..- + . ..|+...
T Consensus 239 g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~ 313 (503)
T 2w40_A 239 NIPITGCIGDQQSACIGQAIFD---EGE--AKCTYGTGVFLLINTGEKVVYSTCGLITTICYKFNDNDKPKYALEGSIGT 313 (503)
T ss_dssp TCEEEEEEEHHHHHHHHTTCCS---TTC--EEEEESSSEEEEEECTTSCCCCSSSCEEEEEECCSTTSCCEEEEEEEESC
T ss_pred CceEEEECchHHHHHHhCCCCC---CCc--EEEEechhheeeeecCCccccCCCCceeEEEeecCCCCCceEEEechhhh
Confidence 7888888889999999887543 233 33446666544433310 0011122333222221 1 0 1122222
Q ss_pred HHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeEEEEEEcHH
Q psy2902 303 DQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVHLNLKITRA 373 (945)
Q Consensus 303 D~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~~~~~itr~ 373 (945)
-...++|+++ +... .+ +..|.+.++++ . .....+.+|++.... +...+++...++.
T Consensus 314 ~g~~~~w~~~-~~~~------~~---~~~l~~~a~~~----~-~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~ 378 (503)
T 2w40_A 314 AGSGVSWLLK-NKLI------DD---PSEASDIMEKC----E-NTTGVIFVPAFSGLYAPRWRSDARASIYGMTFNTERS 378 (503)
T ss_dssp SHHHHHHHHH-TTSS------SC---GGGHHHHHHHC----C-SCTTCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHH
T ss_pred hHhHHHHHHH-hCCc------CC---HHHHHHHHhhC----C-CCCCEEEecCCCCCCCCCCCCCCcEEEECCCCCCCHH
Confidence 2345678777 6411 01 12233333332 2 233445666653111 1112334455788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCC-CcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhh
Q psy2902 374 KLELLVDELITRTIEPCRIAIKD-AGIKVSDI-NDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 374 ~~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i-~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
++-+.+-+.+..-...+.+.|++ .+. .+ +.|.++||+++++.|.+++++.+|.++... .+.++.|+|||+.|+.
T Consensus 379 ~l~rAvlEgia~~~~~~~~~l~~~~g~---~~~~~i~~~GG~a~s~~~~Q~~Adv~g~pV~~~-~~~e~~alGaA~la~~ 454 (503)
T 2w40_A 379 HIVRALLEGIAFQLNEIVDSLTSDMGI---EMLHVLRCDGGMTKNKPFMQFNSDIINTKIEVS-KYKEVTSLGAAVLAGL 454 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---SCCSCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC---CccceEEEeCccccCHHHHHHHHHHHCCeEEec-CCCcchHHHHHHHHHH
Confidence 88876666655555555556654 443 35 789999999999999999999999998754 4567999999999988
Q ss_pred ccCCCC
Q psy2902 452 LSGDRK 457 (945)
Q Consensus 452 ~~~~~~ 457 (945)
..|..+
T Consensus 455 ~~G~~~ 460 (503)
T 2w40_A 455 EVKIWD 460 (503)
T ss_dssp HTTCSS
T ss_pred HhCccC
Confidence 776433
|
| >2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.5e-08 Score=112.15 Aligned_cols=202 Identities=16% Similarity=0.193 Sum_probs=113.4
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE-EeecCCceEEEEEec-CC----CCCchHHHH
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI-ADVDGEKQFEVLSTN-GD----TFLGGEDFD 303 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~-~~~~~~~~~~vl~~~-~~----~~lGG~~iD 303 (945)
.|++++....+..||+++.+... .+. +++-+|.+++-..+..- ......+.+...+.. .+ ...|+...-
T Consensus 232 ~g~pV~~g~~D~~aa~~g~g~~~---~g~--~~~s~GTs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 306 (495)
T 2dpn_A 232 APVPIRGVLGDQQAALFGQAALG---GGE--GKCTYGTGAFLLLNTGKRPVLSEKGLLATVAWSLGGRATYALEGSLFVA 306 (495)
T ss_dssp SCCBEEEEEEHHHHHHHHTTCCS---TTC--EEEEESSSEEEEEECTTSCCCCSSSCEEEEEEEETTEEEEEEEEEESCS
T ss_pred CCCeEEEECcHHHHHHHhCCCCC---CCc--EEEEccHhhhhhhhcCCccccCCCCceEEEEEEcCCCCEEEEechHHhH
Confidence 67888888889999999887543 233 33446665444333210 001111222222111 00 111232223
Q ss_pred HHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeeccC---------CCCeEEEEEEcHHH
Q psy2902 304 QRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSN---------GAPVHLNLKITRAK 374 (945)
Q Consensus 304 ~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~~---------~~~~~~~~~itr~~ 374 (945)
...++|+++ +... .+ +..|.+.++++ . .....+.+|++.... +...+++...++.+
T Consensus 307 g~~~~w~~~-~~~~------~~---~~~l~~~a~~~----~-~~~gl~~~P~~~G~r~P~~d~~arg~~~Gl~~~~~~~~ 371 (495)
T 2dpn_A 307 GAAVGWLKE-VGLI------RE---SAEVEALAASV----E-DTGDVYFVPAFTGLGAPYWDPYARGTLLGLTRGTSRAH 371 (495)
T ss_dssp HHHHHHHHH-TTSS------SS---TTTHHHHHHTC----S-CCSSCEEECCTTCBCTTTCBTTCCEEEEEECTTCCHHH
T ss_pred HHHHHHHHH-cCCc------cC---HHHHHHHHhhC----C-CCCcEEEecCCCCCCCCCCCCCCceEEEecCCCCCHHH
Confidence 345678777 5311 01 11233333322 2 233345666653111 11123344557888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 375 LELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 375 ~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
+-+.+-+.+......+.+.|++ .+. .++.|+++||+|+++.|.+++++.+|.++... .+.++.|+|||+.|+...
T Consensus 372 ~~rAvlEgia~~~~~~~~~l~~~~g~---~~~~i~~~GG~a~n~~~~q~~Adv~g~pV~~~-~~~e~~alGaA~la~~a~ 447 (495)
T 2dpn_A 372 LARAALEGVAFQVRDVVLAMEEEAGV---RLKVLKADGGMAQNRLFLKIQADLLGVPVAVP-EVTETTALGAALMAGVGA 447 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSC---CCCCEEEESGGGGCHHHHHHHHHHHTSCEEEE-SCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCC---CCcEEEEecccccCHHHHHHHHHHhCCeeEec-CCcccHHHHHHHHHHhhc
Confidence 7766555555444444455543 333 36789999999999999999999999998754 456799999999998776
Q ss_pred CC
Q psy2902 454 GD 455 (945)
Q Consensus 454 ~~ 455 (945)
|.
T Consensus 448 G~ 449 (495)
T 2dpn_A 448 GA 449 (495)
T ss_dssp TS
T ss_pred Cc
Confidence 63
|
| >2ctt_A DNAJ homolog subfamily A member 3; ZING finger, beta-hairpin, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.58 E-value=2.6e-08 Score=88.50 Aligned_cols=76 Identities=21% Similarity=0.474 Sum_probs=54.0
Q ss_pred CCccceeeccccccccccceeeEeecc-------------ccccCCCCCccccccC-----cCcccCCCCCCCceEeEee
Q psy2902 688 NGKDLRYNLEITLEQAAYGFNTSIRVP-------------SWDICKSCYGNGAKKG-----TSPISCFTCSGQGQVRMQQ 749 (945)
Q Consensus 688 ~g~~~~~~l~~~~~~~~~g~~~~~~~~-------------~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~ 749 (945)
...++.++|++.|.+.....+...... ...+|+.|+|+|.... ...++|+.|+|+|++
T Consensus 4 ~~~~l~vslee~~~G~~~~i~~~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~~~~~~G~~~~~~~C~~C~G~G~~---- 79 (104)
T 2ctt_A 4 GSSGMELTFNQAAKGVNKEFTVNIMDTCERCNGKGNEPGTKVQHCHYCGGSGMETINTGPFVMRSTCRRCGGRGSI---- 79 (104)
T ss_dssp CCCCCCCCCSSCCSSSCTTCCSSCCEECSSSSSSSSCTTCCCEECSSSSSSCEEEEEETTEEEEEECSSSSSSSEE----
T ss_pred eEEEEEEEHHHHcCCCEEEEEeeeeeECCCCcCCccCCCCCCccCCCCCCCEEEEEEeCCEEEEEECCcCCCcceE----
Confidence 344555555555555555444444433 3478999999997642 246799999999998
Q ss_pred ceeeeeecCCCCCCceEEeecC
Q psy2902 750 GFFSIQQTCPKCQGAGKVIPHP 771 (945)
Q Consensus 750 ~~~~~~~~C~~C~G~g~~~~~~ 771 (945)
+.++|+.|+|.|++....
T Consensus 80 ----i~~~C~~C~G~G~v~~~k 97 (104)
T 2ctt_A 80 ----IISPCVVCRGAGQAKQKK 97 (104)
T ss_dssp ----CSSCCSSSSSCSEECCCC
T ss_pred ----CCCcCCCCCCeeEEEEEE
Confidence 789999999999986543
|
| >2q2g_A HSP40 protein, heat shock 40 kDa protein, putative (fragment); malaria, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=98.49 E-value=9.9e-08 Score=93.82 Aligned_cols=73 Identities=23% Similarity=0.321 Sum_probs=59.8
Q ss_pred EeecCCcccCCCceEee--------------------eeeEEEEeecCCCCCeEEEEcCCCCCCCCC-CCCccEEEEEEE
Q psy2902 767 VIPHPCLDCNGIGRIKR--------------------NKTLEVKIPAGIENNMRIRSTGNGEPGLNG-GSNGNLYIEIHI 825 (945)
Q Consensus 767 ~~~~~c~~c~G~g~~~~--------------------~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~-~~~Gdl~i~i~v 825 (945)
+.+|+.|+|+|.++..+ .+.+.|.+|+|+++|++++++|+|||..++ +.+|||||+|+|
T Consensus 82 ~~~h~~F~R~G~DL~~~~~Isl~eAllG~~i~v~tldG~~v~i~ip~~t~~g~~~rl~g~Gmp~~~~~~~~GDL~V~~~V 161 (180)
T 2q2g_A 82 TKTHPRFTRDDCHLIMKVTIPLVRALTGFTCPVTTLDNRNLQIPIKEIVNPKTRKIVPNEGMPIKNQPGQKGDLILEFDI 161 (180)
T ss_dssp ECCCSSCEEETTEEEEEEEEEHHHHHHCEEEEEECTTCCEEEEEECSCCCTTCEEEETTCSCBCSSSTTCBCCEEEEEEE
T ss_pred EEecccEEEcCCEEEEEEEcCHHHHhCCCEEEeeCCCCCEEEEECCCccCCCEEEEECCcCCCcCCCCCCcCCEEEEEEE
Confidence 46899999999655544 335688999999999999999999997643 568999999999
Q ss_pred ecCCcccccCCCce
Q psy2902 826 KPHKVFERDGDDLH 839 (945)
Q Consensus 826 ~~~~~~~r~g~dl~ 839 (945)
..|..++.++.+++
T Consensus 162 ~~P~~Ls~~q~~~l 175 (180)
T 2q2g_A 162 CFPKSLTPEQKKLI 175 (180)
T ss_dssp ECCSCCCHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 99998877665543
|
| >1c3g_A Heat shock protein 40; beta sheets, short helices, chaperone; 2.70A {Saccharomyces cerevisiae} SCOP: b.4.1.1 b.4.1.1 PDB: 2b26_A | Back alignment and structure |
|---|
Probab=98.29 E-value=9.6e-07 Score=85.90 Aligned_cols=79 Identities=13% Similarity=0.175 Sum_probs=64.4
Q ss_pred CceeEEeeCHHHHhcCCeEEEecC----CC-----eEEEEeCCCCCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCCC
Q psy2902 837 DLHYEMPISFSTAALGGEIEAPTL----NG-----KAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPVQ 907 (945)
Q Consensus 837 dl~~~~~i~l~eal~G~~~~v~~l----~g-----~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~~ 907 (945)
|+.+++.|+|.||+.|++++|..- +| ...+.||+|+.+|+++|++|+|-+...++.+|||||++++..++.
T Consensus 2 d~~~~l~islee~~~G~~k~i~~~~~~~~G~~~~~~l~V~Ip~G~~~G~~ir~~g~G~~~~~gg~~GDl~v~i~v~~h~~ 81 (170)
T 1c3g_A 2 TVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHPN 81 (170)
T ss_dssp EEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCSS
T ss_pred CEEEEEEeEHHHhhCCcEEEEEEEEecCCCcEEeEEEEEEeCCCccCCCEEEEeccccCCCCCCccccEEEEEEEccCCc
Confidence 788999999999999999887643 23 346779999999999999999987656677899999999998776
Q ss_pred CCHHHHHH
Q psy2902 908 LTEYQKKL 915 (945)
Q Consensus 908 l~~~~~~~ 915 (945)
+.-+..++
T Consensus 82 F~R~G~DL 89 (170)
T 1c3g_A 82 FKRDGDDL 89 (170)
T ss_dssp EEEETTEE
T ss_pred cEEeCCcE
Confidence 65444333
|
| >1exk_A DNAJ protein; extended beta-hairpin, CXXCXGXG, zinc-binding motif, chaperone; NMR {Escherichia coli} SCOP: g.54.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=5.1e-07 Score=75.83 Aligned_cols=69 Identities=23% Similarity=0.459 Sum_probs=52.6
Q ss_pred ceeeccccccccccceeeEeeccccccCCCCCccccccC-----cCcccCCCCCCCceEeEeeceeeeeecCCCCCCceE
Q psy2902 692 LRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKG-----TSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGK 766 (945)
Q Consensus 692 ~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~-----~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~ 766 (945)
..+.++....+..+.++.........+|+.|+|+|.... ....+|+.|+|+|.+ +.++|+.|+|.|+
T Consensus 4 ~~i~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~g~~~~~~~C~~C~G~G~~--------~~~~C~~C~G~G~ 75 (79)
T 1exk_A 4 KEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL--------IKDPCNKCHGHGR 75 (79)
T ss_dssp TSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE--------CSSBCGGGTTSSE
T ss_pred EEEEcccceECCCCcccccCCCccCCCCCCCcCeEEEEEEcCCCEEeeECcCCCCccEE--------CCCcCCCCCCeEE
Confidence 344555556666777666655555679999999998653 135699999999998 6889999999998
Q ss_pred Ee
Q psy2902 767 VI 768 (945)
Q Consensus 767 ~~ 768 (945)
+.
T Consensus 76 ~~ 77 (79)
T 1exk_A 76 VE 77 (79)
T ss_dssp EE
T ss_pred Ee
Confidence 74
|
| >1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A | Back alignment and structure |
|---|
Probab=98.14 E-value=6.8e-07 Score=79.21 Aligned_cols=89 Identities=42% Similarity=0.679 Sum_probs=50.6
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCCCCCCc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNMSGSSA 655 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~~g~~~ 655 (945)
..|.++|.+..+++....++|+... . ..+.+.+..+++||++|+++.+|+.||.+++.++.++..++++
T Consensus 14 ~as~~eIk~ayr~l~~~~HPDk~~~---------~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~~~~~~~ 82 (103)
T 1bq0_A 14 TAEEREIRKAYKRLAMKYHPDRNQG---------D--KEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGG 82 (103)
T ss_dssp SCCHHHHHHHHHHHHTTTCTTTCTT---------T--CTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSCSCC-----
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC---------c--HHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhcccCcCCCC
Confidence 4678999999999999888887321 1 1123567888999999999999999999999887754322211
Q ss_pred ccccccccccccccccccCC
Q psy2902 656 SAEASNFADAFGDIFGDIFG 675 (945)
Q Consensus 656 ~~~~~~f~d~f~~~F~~~~g 675 (945)
..++.+|.++|+++|+++|+
T Consensus 83 ~~~~~~~~~~f~~~f~~~f~ 102 (103)
T 1bq0_A 83 FGGGADFSDIFGDVFGDIFG 102 (103)
T ss_dssp --------------------
T ss_pred CCCCCCHHHHHHHHHHhhcC
Confidence 11122456778778877664
|
| >2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.0003 Score=74.01 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=52.5
Q ss_pred EcHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecC-ccccHHHHHHHHHHh---CCCCCCCCCCCchhhhh
Q psy2902 370 ITRAKLEL-LVDELITRTIEPCRIAIKDAGIKVSDINDIILVGG-MTRMPKVQEKVKEFF---GKDPRRDINPDEAVAVG 444 (945)
Q Consensus 370 itr~~~e~-~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG-~s~~p~v~~~l~~~f---g~~~~~~~~p~~avA~G 444 (945)
.+++++-. ++..+.+++..+.....+..+ ++.|+++|| .+..|.+++.+++.+ +.++..+.+|..+.|+|
T Consensus 207 ~~~eDIaasl~~sV~~~I~~la~~~a~~~~-----i~~Vvf~Gg~l~~n~~l~~~l~~~~~~~~~~~~~p~~~~~~gAlG 281 (287)
T 2ews_A 207 FTPSNKLAAVIGVVGEVVTTMAITVAREFK-----TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIG 281 (287)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCeEEEeCCchhcCHHHHHHHHHHHhhCCceEEECCCccHHHHHH
Confidence 35555543 333343444333333333433 457999999 899999999999974 67777788999999999
Q ss_pred HHHhh
Q psy2902 445 AAIQG 449 (945)
Q Consensus 445 Aa~~a 449 (945)
||+.+
T Consensus 282 AaL~~ 286 (287)
T 2ews_A 282 ALYLE 286 (287)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99875
|
| >4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.5e-05 Score=87.66 Aligned_cols=154 Identities=14% Similarity=0.173 Sum_probs=100.8
Q ss_pred CcEEEEcCCCCCHHHHHHHHHHH-HHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCC
Q psy2902 205 TEAVITVPAYFNDAQRQATKDAG-RIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGE 283 (945)
Q Consensus 205 ~~~VitVPa~~~~~qr~~l~~Aa-~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~ 283 (945)
..++||.|..++...|+.|.+++ +.+|++.+.++.+|.||+++++. ..+-||+|+|+|+|+++.+.-+..-..
T Consensus 222 ~pVLLTEPplnp~~~REkm~EIlFE~fgvpavyl~~qavlAlyasGl------~ttGLVVDiG~g~T~VvPV~eG~vl~~ 295 (655)
T 4am6_A 222 YKVVLVIPDIFKKSHVETFIRVLLTELQFQAVAIIQESLATCYGAGI------STSTCVVNIGAAETRIACVDEGTVLEH 295 (655)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHSCC------SSCEEEEEECSSCEEEEEEETTEECGG
T ss_pred CcEEEEeCCCCCHHHHHHHHHHHHhhcCCCeeeeccHHHHHHHhCCC------CCceEEEcCCCceEEEEEEeCCEEEhh
Confidence 46899999999999999998887 56899999999999999998864 235799999999999999853111111
Q ss_pred ceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeee--eceee-c-c
Q psy2902 284 KQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEIN--EPYIA-M-S 359 (945)
Q Consensus 284 ~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~--i~~~~-~-~ 359 (945)
.. .-..+||.++|+.|.++|..+--......+.. . .=...++.+|+.++.-....+. ...+. . .
T Consensus 296 ai-------~rL~iGG~dLT~yL~kLL~~rgypy~~~~f~t--~---~e~eiVrdIKEk~CyVs~~Di~~q~~~f~~r~P 363 (655)
T 4am6_A 296 SA-------ITLDYGGDDITRLFALFLLQSDFPLQDWKIDS--K---HGWLLAERLKKNFTTFQDADVAVQLYNFMNRSP 363 (655)
T ss_dssp GC-------EEESCCHHHHHHHHHHHHHHTTCSCCSCCTTS--H---HHHHHHHHHHHHHCCCCGGGCCSEEEEEEECCS
T ss_pred he-------eeecchHHHHHHHHHHHHHHcCCCccccCCCC--c---chHHHHHHHHHheEEEcccchhhhhhcceeccC
Confidence 11 12467999999999999876521000011111 1 1145678899999877443332 11111 1 1
Q ss_pred CCCCeEEEEEEcHHHHH
Q psy2902 360 NGAPVHLNLKITRAKLE 376 (945)
Q Consensus 360 ~~~~~~~~~~itr~~~e 376 (945)
......+.+.+--+.|.
T Consensus 364 ~~~~~ky~i~vgdErfl 380 (655)
T 4am6_A 364 NQPTEKYEFKLFDEVML 380 (655)
T ss_dssp SSCEEEEEEEESSHHHH
T ss_pred CCCCcceEEEECCeehh
Confidence 11123566777666654
|
| >3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0001 Score=55.41 Aligned_cols=28 Identities=36% Similarity=0.977 Sum_probs=17.9
Q ss_pred cccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
+++|+.|+|+|++ +.++|+.|+|+|.+.
T Consensus 9 ~~~C~~C~GsG~~--------i~~~C~~C~G~G~v~ 36 (53)
T 3lcz_A 9 ETTCPNCNGSGRE--------EPEPCPKCLGKGVIL 36 (53)
T ss_dssp EEECTTTTTSCEE--------TTEECTTTTTSSEEE
T ss_pred eccCcCCcccccC--------CCCcCCCCCCcEEEE
Confidence 4566666666666 556666666666653
|
| >2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00035 Score=52.51 Aligned_cols=25 Identities=32% Similarity=0.798 Sum_probs=11.8
Q ss_pred cCCCCCccccccCcCcccCCCCCCCceE
Q psy2902 718 ICKSCYGNGAKKGTSPISCFTCSGQGQV 745 (945)
Q Consensus 718 ~C~~C~G~G~~~~~~~~~C~~C~G~G~~ 745 (945)
+|+.|+|+|... ..+|+.|+|.|.+
T Consensus 11 ~C~~C~GsG~~~---~~~C~~C~G~G~v 35 (53)
T 2bx9_A 11 ACPKCERAGEIE---GTPCPACSGKGVI 35 (53)
T ss_dssp ECTTTTTSSEET---TEECTTTTTSSEE
T ss_pred cCCCCcceeccC---CCCCccCCCCccE
Confidence 455555555443 1345555554444
|
| >3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00045 Score=51.90 Aligned_cols=30 Identities=43% Similarity=1.067 Sum_probs=24.5
Q ss_pred eeecCCCCCCceEEeecCCcccCCCceEee
Q psy2902 754 IQQTCPKCQGAGKVIPHPCLDCNGIGRIKR 783 (945)
Q Consensus 754 ~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~ 783 (945)
++.+|+.|+|.|.++.++|..|.|.|.+.+
T Consensus 8 ~~~~C~~C~GsG~~i~~~C~~C~G~G~v~~ 37 (53)
T 3lcz_A 8 LETTCPNCNGSGREEPEPCPKCLGKGVILT 37 (53)
T ss_dssp HEEECTTTTTSCEETTEECTTTTTSSEEEC
T ss_pred eeccCcCCcccccCCCCcCCCCCCcEEEEE
Confidence 577888888888888888888888887654
|
| >3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.038 Score=59.64 Aligned_cols=46 Identities=26% Similarity=0.299 Sum_probs=31.8
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIE 276 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~ 276 (945)
..|++ +.+.++..|||++..........++++++-+|.| +-..++.
T Consensus 95 ~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii~ 140 (321)
T 3vgl_A 95 RVGLP-VVVENDANAAAWGEYRFGAGQGHDDVICITLGTG-LGGGIII 140 (321)
T ss_dssp HHCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEEE
T ss_pred hhCCC-EEEEehhhhHHHHHHHhCCCCCCCCEEEEEeCcc-eEEEEEE
Confidence 34776 6899999999997644332234567888889988 5555553
|
| >2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.48 Score=51.39 Aligned_cols=62 Identities=11% Similarity=-0.028 Sum_probs=41.9
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHH-cC--CccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceE
Q psy2902 203 EITEAVITVPAYFNDAQRQATKDAGRI-AG--LEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFD 271 (945)
Q Consensus 203 ~~~~~VitVPa~~~~~qr~~l~~Aa~~-AG--l~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~d 271 (945)
.+..+.|++|...+......+.+..+. .+ .-.+.+.++..|||+++ . +...+++-+|.|.--
T Consensus 70 ~i~gigi~~pG~vd~~~~~~l~~~l~~~~~~~~~pv~v~NDa~aaa~a~-~------~~~~v~v~~GTGig~ 134 (347)
T 2ch5_A 70 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIATA-T------PDGGVVLISGTGSNC 134 (347)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHHH-C------SSCEEEEEESSSEEE
T ss_pred ceeEEEEeccCCCchHHHHHHHHHHHHhcCCCCceEEEECcHHHHHHhh-C------CCCcEEEEEcCCcee
Confidence 467789999998887655566555544 34 13468999999999984 2 134556667776543
|
| >3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0027 Score=72.60 Aligned_cols=98 Identities=10% Similarity=0.002 Sum_probs=62.0
Q ss_pred cceeeeeceeeccCCC---CeEEEEEEcHHHHHHHHHHHHHH--HHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHH
Q psy2902 347 KQTEINEPYIAMSNGA---PVHLNLKITRAKLELLVDELITR--TIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQE 421 (945)
Q Consensus 347 ~~~~i~i~~~~~~~~~---~~~~~~~itr~~~e~~~~~~i~~--i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~ 421 (945)
....+.+|++...... ....-+-++.+++.+ .+++. +.-.+...++.... .+.|.++||++++++|.|
T Consensus 333 ~~Gl~flP~l~Ger~P~~d~rG~~~Gl~~~~l~R---A~lE~~Gia~~~r~~l~~~~~----~~~i~~~GG~a~s~~w~Q 405 (482)
T 3h6e_A 333 RHGRMILPTLMRGFGPYPHGRFAWINRPEDWFER---RAAACLYAALVADTALDLIGS----TGRILVEGRFAEADVFVR 405 (482)
T ss_dssp HTTCEEESCSSTTCSSCTTCCCEEESCCSSHHHH---HHHHHHHHHHHHHHHHHHTTC----CSEEEEESGGGGCHHHHH
T ss_pred CCCeEEecCCCCCCCCCCCCceEEeCCCHHHHHH---HHHHHHhHHHHHHHHHHHhcC----CCeEEEeCCcccCHHHHH
Confidence 3456777776522110 012223344444444 44432 33333444444321 268999999999999999
Q ss_pred HHHHH-hCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 422 KVKEF-FGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 422 ~l~~~-fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
++++. ||.++.++. ..++.|+|||++|+..
T Consensus 406 i~ADv~~g~pV~~~~-~~e~~alGAA~lA~~a 436 (482)
T 3h6e_A 406 ALASLRPDCAVYTAN-AHNDVSFGALRLIDPG 436 (482)
T ss_dssp HHHHHSTTSEEEEES-SCCCTTGGGHHHHCTT
T ss_pred HHhhhcCCCeEEEcC-CCchHHHHHHHHhCcc
Confidence 99999 999997554 4678999999999865
|
| >2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.6 Score=50.23 Aligned_cols=64 Identities=14% Similarity=0.159 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh---CCCCCCCC---CCCchhhhhHHHhhhhcc
Q psy2902 385 RTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF---GKDPRRDI---NPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 385 ~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---g~~~~~~~---~p~~avA~GAa~~a~~~~ 453 (945)
.+.+.+.++.+..+ ++.|+|+||.+....+++.+.+.+ |.++..+. -.|.++++|+|.+.....
T Consensus 231 ~l~~~~~~~~~~~~-----~~~vvlsGGVa~N~~l~~~l~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~ 300 (330)
T 2ivn_A 231 ALVEVTERAVAHTE-----KDEVVLVGGVAANNRLREMLRIMTEDRGIKFFVPPYDLCRDNGAMIAYTGLRMYKA 300 (330)
T ss_dssp HHHHHHHHHHHHHC-----CSEEEEESGGGGCHHHHHHHHHHHHHHTCEEECCCHHHHSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-----CCeEEEEccHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChhHHHHHHHHHHHHhc
Confidence 33344444444433 468999999999999999999877 55554443 346788999887654433
|
| >2bx9_A Anti-trap, AT, tryptophan RNA-binding attenuator protein-inhibit protein; transcription regulation; 2.80A {Bacillus subtilis} PDB: 2ko8_A* 2zp8_E* 2zp9_C* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00069 Score=50.89 Aligned_cols=29 Identities=28% Similarity=0.888 Sum_probs=25.2
Q ss_pred cccCCCCCCCceEeEeeceeeeeecCCCCCCceEEee
Q psy2902 733 PISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIP 769 (945)
Q Consensus 733 ~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~ 769 (945)
..+|+.|+|+|.+ ...+|+.|+|.|.+..
T Consensus 9 ~~~C~~C~GsG~~--------~~~~C~~C~G~G~v~~ 37 (53)
T 2bx9_A 9 EVACPKCERAGEI--------EGTPCPACSGKGVILT 37 (53)
T ss_dssp EEECTTTTTSSEE--------TTEECTTTTTSSEEEC
T ss_pred cccCCCCcceecc--------CCCCCccCCCCccEEE
Confidence 5689999999998 5688999999998754
|
| >2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.21 Score=52.96 Aligned_cols=47 Identities=23% Similarity=0.295 Sum_probs=34.8
Q ss_pred CCcEEEecCccccHHHHHHHHHHhCC-CCCCCCCCCchhhhhHHHhhhh
Q psy2902 404 INDIILVGGMTRMPKVQEKVKEFFGK-DPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 404 i~~ViLvGG~s~~p~v~~~l~~~fg~-~~~~~~~p~~avA~GAa~~a~~ 451 (945)
.+.|+|.||.+..+.+.+.+++.+.. ++.... .+.+.+.|||.++..
T Consensus 240 p~~IvlgGgv~~~~~~~~~l~~~~~~~~i~~~~-~~~~~~~GAa~la~~ 287 (299)
T 2e2o_A 240 TNKVYLKGGMFRSNIYHKFFTLYLEKEGIISDL-GKRSPEIGAVILAYK 287 (299)
T ss_dssp CSEEEEESGGGGSHHHHHHHHHHHHHTTCEEEC-CSCCHHHHHHHHHHH
T ss_pred CCEEEEECCccCcHHHHHHHHHHCCCCeEeccC-CCCChHHHHHHHHHH
Confidence 46899999998778888888777642 444344 557899999988754
|
| >2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0057 Score=70.45 Aligned_cols=81 Identities=12% Similarity=0.076 Sum_probs=62.9
Q ss_pred EEEcHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHH
Q psy2902 368 LKITRAKLELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAA 446 (945)
Q Consensus 368 ~~itr~~~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa 446 (945)
...+|.+|-+.+-+.+......+.+.|++ .+.. ++.|.++||+|++++|.|++++.||.++.... .++.|+|||
T Consensus 360 ~~~t~~~l~RAvlEgia~~~r~~~~~l~~~~g~~---~~~i~~~GGgaks~~~~Qi~ADvlg~pV~~~~--~e~~alGaa 434 (489)
T 2uyt_A 360 IPESDAELARCIFDSLALLYADVLHELAQLRGED---FSQLHIVGGGCQNTLLNQLCADACGIRVIAGP--VEASTLGNI 434 (489)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC---CSEEEEESGGGGCHHHHHHHHHHHTSEEEECC--TTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEeCChhhhHHHHHHHHHHHCCeeecCC--ccHhHHHHH
Confidence 46689999887777776666666666665 4443 57899999999999999999999999987443 689999996
Q ss_pred Hhhhhcc
Q psy2902 447 IQGSVLS 453 (945)
Q Consensus 447 ~~a~~~~ 453 (945)
+.|....
T Consensus 435 ~~A~~a~ 441 (489)
T 2uyt_A 435 GIQLMTL 441 (489)
T ss_dssp HHHHHHT
T ss_pred HHHHHHc
Confidence 6665433
|
| >2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* | Back alignment and structure |
|---|
Probab=96.24 E-value=0.012 Score=63.59 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=40.0
Q ss_pred CCcEEEecC-ccccHHHHHHHHHHhC------CCCCCCCCCCchhhhhHHHhh
Q psy2902 404 INDIILVGG-MTRMPKVQEKVKEFFG------KDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 404 i~~ViLvGG-~s~~p~v~~~l~~~fg------~~~~~~~~p~~avA~GAa~~a 449 (945)
++.|+++|| .+..|.+++.|+..++ .++..+.+|..+.|+|||+.+
T Consensus 306 i~~IvftGgfla~n~~~~~~L~~~l~~ws~g~~~~~~~~~~~y~GAlGAaL~~ 358 (360)
T 2i7n_A 306 IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLEL 358 (360)
T ss_dssp CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHHHHHHHHH
T ss_pred CCeEEEeCcccccCHHHHHHHHHHHhhhhcCCeeEEEcCCccHHHHHHHHHHh
Confidence 457999999 8999999999999873 566668899999999999976
|
| >1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.019 Score=61.47 Aligned_cols=78 Identities=18% Similarity=0.154 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCch
Q psy2902 220 RQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGG 299 (945)
Q Consensus 220 r~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG 299 (945)
.+.+..+-+.+|+++-.+-.|.+|...+.+...........+|+|+|||+|.+++.+- +.+.. .....+|+
T Consensus 100 ~~fl~~v~~~~G~~i~vIsg~eEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~------~~~~~---~~Sl~~G~ 170 (315)
T 1t6c_A 100 EEFLERVKREVGLVVEVITPEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGKG------YKVRE---VISLPIGI 170 (315)
T ss_dssp HHHHHHHHHHTCCCEEECCHHHHHHHHHHHHHHHTCCCSEEEEEEEETTEEEEEEEET------TEEEE---EEEECCCH
T ss_pred HHHHHHHHHHHCCCEEEcCHHHHHHHHHHHHHhhcccCCCEEEEEeCCCcEEEEEEeC------Cceee---EEEEeccH
Confidence 3455555567899876666777776655544332223467999999999999999752 22211 22356799
Q ss_pred HHHHHHH
Q psy2902 300 EDFDQRI 306 (945)
Q Consensus 300 ~~iD~~l 306 (945)
..+.+.+
T Consensus 171 v~l~e~~ 177 (315)
T 1t6c_A 171 VNLTETF 177 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8888775
|
| >2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.17 Score=54.39 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=30.0
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.|++ +.+.++..|||++..........++++++-+|.| +-..++
T Consensus 108 ~~~p-v~v~ND~~aaa~~e~~~g~~~~~~~~~~l~~GtG-iG~giv 151 (326)
T 2qm1_A 108 LGIP-FALDNDANVAALGERWKGAGENNPDVIFITLGTG-VGGGIV 151 (326)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEecHHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEE
Confidence 4776 6789999999987533222123467888889988 555555
|
| >4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.21 Score=53.86 Aligned_cols=45 Identities=24% Similarity=0.305 Sum_probs=31.8
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
..|++ +.+.++..|||++-.........++++++-+|.| +-..++
T Consensus 119 ~~~~p-V~v~NDa~aaalgE~~~g~~~~~~~~~~l~~GtG-iG~gii 163 (327)
T 4db3_A 119 KIGRS-VKIENDANCFALSEAWDEELQDAPSVMGLILGTG-FGGGLI 163 (327)
T ss_dssp HHSSC-CEEEEHHHHHHHHHHTSTTTTTCSEEEEEEESSS-EEEEEE
T ss_pred HHCCC-EEEecchhHHHHHHHHhCCCCCCCcEEEEEeCcc-ceEEEE
Confidence 34776 7899999999998755443344577888888887 444444
|
| >3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.11 Score=55.83 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHc-CCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 228 RIA-GLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 228 ~~A-Gl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
+.. |++ +.+.++..|||++-.........++++++-+|.| +-..++
T Consensus 115 ~~~~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~gii 161 (321)
T 3r8e_A 115 SEFPHIH-FKIENDAKCAALGEYYFGENKRMQTFILLALGTG-VGSGVM 161 (321)
T ss_dssp HHCTTSE-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred HHcCCCC-EEEEchHHHHHHHHHHhCCCCCCCcEEEEEECCc-eEEEEE
Confidence 345 666 6799999999997644332234567888889988 555554
|
| >3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.2 Score=53.25 Aligned_cols=45 Identities=18% Similarity=0.195 Sum_probs=30.1
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
..|++ +.+.++..|||++-.........++++++-+|.| +-..++
T Consensus 97 ~~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~~~l~~GtG-iG~gii 141 (302)
T 3vov_A 97 ATGRP-VFLENDANAAALAEHHLGAAQGEESSLYLTVSTG-IGGGVV 141 (302)
T ss_dssp HHSSC-EEEEEHHHHHHHHHHHHSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred hhCCC-EEEEechHHHHHHHHHhCCCCCCCCEEEEEECCc-eeEEEE
Confidence 35666 6799999999987654332234567888888887 344444
|
| >2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.0034 Score=53.92 Aligned_cols=64 Identities=34% Similarity=0.401 Sum_probs=49.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~ 649 (945)
..+.++|.+..+++....++|+.. .. ...+.+.|..+.+||++|+++.+|+.||.++..++..+
T Consensus 20 ~as~~eIk~ayr~l~~~~HPDk~~---------~~-~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 83 (92)
T 2dmx_A 20 SASPEDIKKAYRKLALRWHPDKNP---------DN-KEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSWRAG 83 (92)
T ss_dssp TCCTTHHHHHHHHHHHHTCTTTCS---------SC-SHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSSCCC
T ss_pred CCCHHHHHHHHHHHHHHHCCCCCC---------cc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 457889999999998888888631 11 11223467888999999999999999999998877643
|
| >4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.3 Score=51.77 Aligned_cols=48 Identities=19% Similarity=0.214 Sum_probs=34.6
Q ss_pred CCcEEEecCccccHHHHHHHHHHhCCCC------CCCCCCCchhhhhHHHhhhh
Q psy2902 404 INDIILVGGMTRMPKVQEKVKEFFGKDP------RRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 404 i~~ViLvGG~s~~p~v~~~l~~~fg~~~------~~~~~p~~avA~GAa~~a~~ 451 (945)
++.|+|.||.+..+.+.+.+++.+.... ......+.+.++|||.++..
T Consensus 238 p~~IvlgGgi~~~~~~~~~l~~~l~~~~~~~~~i~~s~lg~~a~~~GAa~l~~~ 291 (297)
T 4htl_A 238 PTHIFIGGGITSRPTFIAELKHHMESFGLRDTIIETATHKNQAGLLGAVYHFLQ 291 (297)
T ss_dssp CSEEEEESGGGGSTTHHHHHHHHHTTTCCTTCEEEECSCTTTHHHHHHHHHHHH
T ss_pred CCEEEEeCcccccHHHHHHHHHHHHHhccCCCeEEECCcCChHHHHhHHHHHHH
Confidence 4689999999988878888887774221 12234567999999988754
|
| >2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.0026 Score=54.12 Aligned_cols=62 Identities=32% Similarity=0.446 Sum_probs=49.7
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~ 649 (945)
..+.+||.+..+++....++|+... -.+...|..+.+||++|+++.+|+.||.++..++..+
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~~~------------~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~~~ 79 (88)
T 2ctr_A 18 SASERQIKKAFHKLAMKYHPDKNKS------------PDAEAKFREIAEAYETLSDANRRKEYDTLGHSAFTSG 79 (88)
T ss_dssp TCCHHHHHHHHHHHHHHTCTTTCCS------------HHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC------------hHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccccC
Confidence 4688999999999999888886321 0123567888999999999999999999998877644
|
| >2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0059 Score=52.37 Aligned_cols=59 Identities=39% Similarity=0.525 Sum_probs=48.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDP 648 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~ 648 (945)
..+.+||.+..+++....++|+.. .+...|..+.+||++|+++++|+.||.++..+...
T Consensus 19 ~as~~eIk~ayr~l~~~~HPDk~~--------------~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~ 77 (92)
T 2o37_A 19 SANEQELKKGYRKAALKYHPDKPT--------------GDTEKFKEISEAFEILNDPQKREIYDQYGLEAARS 77 (92)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTSTT--------------CCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC--------------ChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhc
Confidence 468899999999998888888731 11247788899999999999999999999877653
|
| >1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0084 Score=49.50 Aligned_cols=60 Identities=38% Similarity=0.602 Sum_probs=48.5
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
..|.++|.+..+++....++|+.. .. .+...|..+++||++|+++.+|..||.++..|+.
T Consensus 14 ~as~~~Ik~ayr~l~~~~HPD~~~---------~~---~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~~ 73 (77)
T 1hdj_A 14 GASDEEIKRAYRRQALRYHPDKNK---------EP---GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp TCCHHHHHHHHHHHHHTTCTTTCC---------CT---THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------Cc---cHHHHHHHHHHHHHHHCCHHHHHHHHHHcccccc
Confidence 467899999999999888888632 11 1335678889999999999999999999988765
|
| >2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0055 Score=53.30 Aligned_cols=64 Identities=36% Similarity=0.514 Sum_probs=46.7
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~ 649 (945)
..|.+||.+..+++....++|+.. .. .-.+...|..+++||++|+++.+|+.||.++..++.+.
T Consensus 13 ~as~~eIk~aYr~la~~~HPDk~~---------~~-~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~~~ 76 (99)
T 2lgw_A 13 SASADDIKKAYRRKALQWHPDKNP---------DN-KEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLTGT 76 (99)
T ss_dssp TSCHHHHHHHHHHHHHHTSTTTCC---------SC-CHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------cc-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccccCC
Confidence 467899999999999988888631 11 11133567888999999999999999999998877643
|
| >3pmq_A Decaheme cytochrome C MTRF; greek KEY, C type cytochrome, outer membrane, electron trans; HET: HEC; 3.20A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0038 Score=72.53 Aligned_cols=74 Identities=22% Similarity=0.339 Sum_probs=56.2
Q ss_pred eeeccccccccccceeeEeeccccccCCCCCccccccCc---CcccCCCCCCCceEe------------Eeecee-eeee
Q psy2902 693 RYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT---SPISCFTCSGQGQVR------------MQQGFF-SIQQ 756 (945)
Q Consensus 693 ~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~------------~~~~~~-~~~~ 756 (945)
.++++++|+++..|.++.+.+.+...|..|+|+|...+. ...+|+.|+|+.... +..|.| +...
T Consensus 168 ~~~l~i~feeA~~G~~k~i~v~~~~~C~tCHGsGA~~Gt~~~~~~tC~tCHGs~~~~~~~~~~~~~iH~iH~G~fP~~~~ 247 (669)
T 3pmq_A 168 ITNQHYDWQSSGNMLAYTRNLVSIDTCNSCHSNLAFHGGRYNQVETCVTCHNSKKVSNAADIFPQMIHSKHLTGFPQSIS 247 (669)
T ss_dssp SCCCEEEEECSSSSCCCCCCCCCSHHHHHHHSSCCTTTTTSCSSSCSTTTSSTTTCCCSSCSHHHHHHHHTTSSCSSCTT
T ss_pred eEEEEEEhHHhhCCCceEEEeccCCcCCCCCCCCCcCCccCcCCccCCCCCCCcccCCccccccceeeeeeccCCCCccC
Confidence 357778899999999999999999999999999998876 678999999994210 000111 2345
Q ss_pred cCCCCCCceE
Q psy2902 757 TCPKCQGAGK 766 (945)
Q Consensus 757 ~C~~C~G~g~ 766 (945)
.|..|+..+.
T Consensus 248 ~C~~CH~~~~ 257 (669)
T 3pmq_A 248 NCQTCHADNP 257 (669)
T ss_dssp CCTTTSCCCT
T ss_pred cchhhcCCcc
Confidence 6999988763
|
| >2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=94.49 E-value=0.79 Score=49.20 Aligned_cols=44 Identities=18% Similarity=0.161 Sum_probs=29.7
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.+++ +.+.++..|||++...........+++++-+|.| +-..++
T Consensus 120 ~~~p-v~v~NDa~aaalgE~~~g~~~~~~~~v~l~~GtG-iG~giv 163 (327)
T 2ap1_A 120 LDRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTG-VGGGLV 163 (327)
T ss_dssp HTSC-EEEEEHHHHHHHHHHTSTTGGGCSEEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEecHHHHHHHHHHHhCcCCCCCcEEEEEECCc-EEEEEE
Confidence 4666 6899999999997543322123467888888888 445544
|
| >3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=94.33 E-value=5.1 Score=42.90 Aligned_cols=67 Identities=18% Similarity=0.230 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHh---CCCCCCCC---CCCchhhhhHHHhhhhccC
Q psy2902 383 ITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF---GKDPRRDI---NPDEAVAVGAAIQGSVLSG 454 (945)
Q Consensus 383 i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~f---g~~~~~~~---~p~~avA~GAa~~a~~~~~ 454 (945)
.+.+.+.+.++++..+ ++.|+|+||.+....+++.+.+.+ |.++..+. -.|.++++|+|.+.....+
T Consensus 234 ~~~l~~~~~~a~~~~g-----~~~vvlsGGVa~N~~L~~~L~~~l~~~g~~v~~p~~~~~~D~G~~iG~a~~~~~~~g 306 (334)
T 3eno_A 234 FAMLVEVLERALYVSG-----KDEILMAGGVALNRRLRDMVTNMAREAGIRSYLTDREYCMDNGIMIAQAALLMYKSG 306 (334)
T ss_dssp HHHHHHHHHHHHHHHT-----CSEEEEESSGGGCHHHHHHHHHHHHHHTSEEECCCTTTTSCCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcC-----CCeEEEcCCHHHHHHHHHHHHHHHHHcCCEEEecCCCCCChHHHHHHHHHHHHHHcC
Confidence 3444455555665554 468999999999999999999887 55554332 2477999999876654444
|
| >1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A | Back alignment and structure |
|---|
Probab=94.26 E-value=1.2 Score=49.49 Aligned_cols=44 Identities=16% Similarity=0.237 Sum_probs=29.9
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.|++ +.+.++..|||++...........+++++-+|.| +-..++
T Consensus 186 ~~~p-v~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 229 (406)
T 1z6r_A 186 TGVP-VYIQHDISAWTMAEALFGASRGARDVIQVVIDHN-VGAGVI 229 (406)
T ss_dssp HSSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhcCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 6789999999997543322233467888888887 445555
|
| >2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.019 Score=47.91 Aligned_cols=61 Identities=34% Similarity=0.459 Sum_probs=47.1
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGI 646 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~ 646 (945)
..+.++|.+..+++....++|+... . .......|..+++||++|+++.+|..||.+++.+.
T Consensus 20 ~as~~eIk~ayr~l~~~~HPDk~~~---------~-~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~~ 80 (82)
T 2ej7_A 20 QASSEAIKKAYRKLALKWHPDKNPE---------N-KEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGPS 80 (82)
T ss_dssp TCCHHHHHHHHHHHHTTSCTTTCST---------T-HHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCSC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC---------c-HHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCcccc
Confidence 4688999999999988888886321 0 01223467888999999999999999999887654
|
| >1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=93.95 E-value=0.82 Score=48.19 Aligned_cols=68 Identities=7% Similarity=-0.105 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCcccc--HHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 379 VDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRM--PKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 379 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~--p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
...++++..+.+-..+ .... ..+.+.|+|.||.+.. +.+++.+++.. .+ ...|..+...||+.+|...
T Consensus 212 A~~i~~~~~~~La~~i-~~~~-~~~p~~vvlgGGv~~~~~~~l~~~l~~~~-~~---i~~~~~a~~~GA~~la~~~ 281 (291)
T 1zbs_A 212 VYSLVQNSFDDFLVRN-VLRY-NRPDLPLHFIGSVAFHYREVLSSVIKKRG-LT---LGSVLQSPMEGLIQYHHNN 281 (291)
T ss_dssp HHHHHHHHHHHHHHHH-TGGG-CCTTSCEEEESHHHHHTHHHHHHHHHHTT-CC---EEEEESCSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHH-hccc-CCCCceEEEECchHHhhHHHHHHHHHHcC-Ce---ecccCcCHHHHHHHHHHhh
Confidence 3344444444444444 2211 1156789999998876 56666665532 11 2235678999999998643
|
| >2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.75 E-value=1.7 Score=45.59 Aligned_cols=43 Identities=19% Similarity=0.171 Sum_probs=29.4
Q ss_pred HcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
..|++ +.+.++..|||++... .....++++++-+|.| +-..++
T Consensus 93 ~~~~p-v~v~NDa~aaa~~e~~--~~~~~~~~v~l~~GtG-iG~giv 135 (292)
T 2gup_A 93 SYQLP-VHLENDANCVGLSELL--AHPELENAACVVIGTG-IGGAMI 135 (292)
T ss_dssp GGCCC-EEEEEHHHHHHHHHHH--HCTTCSSEEEEEESSS-EEEEEE
T ss_pred HcCCC-EEEechHHHHHHHHHH--hcCCCCeEEEEEECCc-eEEEEE
Confidence 35665 6799999999998644 1123466888889987 445544
|
| >1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.72 E-value=1.2 Score=49.77 Aligned_cols=44 Identities=27% Similarity=0.288 Sum_probs=30.1
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.|++ +.+.++..|||++...........+++++-+|.| +-..++
T Consensus 208 ~~~p-V~v~NDa~aaalaE~~~g~~~~~~~~v~l~~GtG-iG~giv 251 (429)
T 1z05_A 208 TGLP-VFVANDTRAWALAEKLFGHSQDVDNSVLISIHHG-LGAGIV 251 (429)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHHSTTTTCSSEEEEEESSS-EEEEEE
T ss_pred hCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCc-EEEEEE
Confidence 4776 6899999999997643322234567888888887 445555
|
| >2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 | Back alignment and structure |
|---|
Probab=93.63 E-value=2.6 Score=46.17 Aligned_cols=42 Identities=19% Similarity=0.231 Sum_probs=28.7
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.|++ +.+.++..|||++...... .. .+++++-+|.| +-..++
T Consensus 188 ~~~p-V~v~NDanaaalaE~~~g~-~~-~~~v~l~~GtG-iG~giv 229 (380)
T 2hoe_A 188 YGIE-VWVENDADMGAVGEKWYTK-RD-DSFAWILTGKG-IGAGII 229 (380)
T ss_dssp HCSE-EEEEEHHHHHHHHHHHHTT-CC-SCEEEEEESSS-CEEEEE
T ss_pred hCCC-EEEechHHHHHHHHHHhCC-CC-CcEEEEEeCCc-eEEEEE
Confidence 4775 6899999999997643322 12 67888888887 345544
|
| >3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.047 Score=54.78 Aligned_cols=64 Identities=31% Similarity=0.512 Sum_probs=51.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPNM 650 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~~ 650 (945)
..+.+||.+..+++....++|+.. ... .+.+++..+.+||++|+++++|+.||.+++.+.....
T Consensus 13 ~a~~~~ik~ay~~l~~~~HPD~~~---------~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~ 76 (210)
T 3apq_A 13 TASSREIRQAFKKLALKLHPDKNP---------NNP--NAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDNQ 76 (210)
T ss_dssp TCCHHHHHHHHHHHHHHHCGGGCT---------TCT--THHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCCTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------CCh--HHHHHHHHHHHHHHHhCCHHHHHHHHHhccccccccc
Confidence 468899999999999999999732 111 2345788889999999999999999999988876543
|
| >2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.032 Score=48.46 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=43.6
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHh
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQY 641 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~ 641 (945)
..+.+||.+..+++....++|+... . ..+...|..|.+||++|+++.+|+.||..
T Consensus 28 ~as~~eIk~ayr~l~~~~HPDk~~~---------~--~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~ 82 (99)
T 2yua_A 28 TATQAQIKAAYYRQCFLYHPDRNSG---------S--AEAAERFTRISQAYVVLGSATLRRKYDRG 82 (99)
T ss_dssp TCCHHHHHHHHHHHHHHSCTTTCSS---------C--SHHHHHHHHHHHHHHHTTSHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC---------C--HHHHHHHHHHHHHHHHHCCHHHHHHHHHh
Confidence 4688999999999998888887321 0 11345788889999999999999999973
|
| >2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.03 E-value=0.036 Score=45.73 Aligned_cols=58 Identities=34% Similarity=0.471 Sum_probs=45.9
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcccc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g 645 (945)
..+.++|.+..+++....++|+.... .+...|..+.+||++|+++.+|..||.++..+
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~~~~------------~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~ 75 (78)
T 2ctp_A 18 GASDEDLKKAYRRLALKFHPDKNHAP------------GATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP 75 (78)
T ss_dssp TCCHHHHHHHHHHHHTTSCTTTCSSH------------HHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCc------------cHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence 46789999999999888888863211 12346778899999999999999999988654
|
| >2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A | Back alignment and structure |
|---|
Probab=92.97 E-value=5.1 Score=43.07 Aligned_cols=44 Identities=32% Similarity=0.226 Sum_probs=29.9
Q ss_pred cCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEE
Q psy2902 230 AGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSII 275 (945)
Q Consensus 230 AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~ 275 (945)
.|++ +.+.++..|||++...........+++++-+|.| +-..++
T Consensus 131 ~~~p-v~v~NDa~aaal~E~~~g~~~~~~~~v~i~~GtG-iG~gii 174 (343)
T 2yhw_A 131 LHLP-VWVDNDGNCAALAERKFGQGKGLENFVTLITGTG-IGGGII 174 (343)
T ss_dssp HCSC-EEEEEHHHHHHHHHHHTSTTTTCSCEEEEEESSS-EEEEEE
T ss_pred HCCC-EEEechhHHHHHHHHHhCCCCCCCcEEEEEECCC-EEEEEE
Confidence 4776 6789999999997644322233467888888887 445554
|
| >2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.046 Score=45.22 Aligned_cols=59 Identities=34% Similarity=0.464 Sum_probs=46.2
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcccc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g 645 (945)
..+.++|.+..+++....++|+.. ... .+...|..+.+||++|+++.+|..||.++..+
T Consensus 18 ~a~~~~Ik~ayr~l~~~~HPD~~~---------~~~--~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~ 76 (79)
T 2dn9_A 18 NASQKEIKKAYYQLAKKYHPDTNK---------DDP--KAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP 76 (79)
T ss_dssp TCCHHHHHHHHHHHHHHTCTTTCS---------SCT--THHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC---------CCH--HHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence 467899999999998888888622 110 13456788899999999999999999987654
|
| >1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A* | Back alignment and structure |
|---|
Probab=92.90 E-value=11 Score=40.34 Aligned_cols=43 Identities=30% Similarity=0.359 Sum_probs=30.2
Q ss_pred HHcCCccceecchhHHHHHHhccCC--------C--CCCCceEEEEEeCCcce
Q psy2902 228 RIAGLEVKRIINEPTAAALAFGLDK--------S--GKSDRNIVVYDLGGGTF 270 (945)
Q Consensus 228 ~~AGl~~v~li~Ep~AAAl~~~~~~--------~--~~~~~~vlVvD~GggT~ 270 (945)
+..|++.+.+.+|..|+|++-.... . ....++++++-+|.|-=
T Consensus 99 ~~~~~p~V~v~NDanaaalgE~~~~~~~~~~~g~g~~~~~~~~~~v~~GTGiG 151 (332)
T 1sz2_A 99 KNLGFSHLEIINDFTAVSMAIPMLKKEHLIQFGGAEPVEGKPIAVYGAGTGLG 151 (332)
T ss_dssp HHHTCSEEEEEEHHHHHHHHGGGCCGGGEEECSSCCCCTTCCEEEEEESSSEE
T ss_pred HHhCCCcEEEEeCHhHHhccccccChhhheecCCCCCCCCCcEEEEEcCccce
Confidence 4468887899999999999764421 0 12346688888998843
|
| >2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.043 Score=48.84 Aligned_cols=61 Identities=20% Similarity=0.296 Sum_probs=48.8
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
..+.++|.+..+++....++|+... .. .+...|..+.+||++|+++++|+.||.++..++.
T Consensus 31 ~as~~eIk~ayr~l~~~~HPDk~~~---------~~--~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~ 91 (112)
T 2ctq_A 31 LSSVEQILAEFKVRALECHPDKHPE---------NP--KAVETFQKLQKAKEILTNEESRARYDHWRRSQMS 91 (112)
T ss_dssp TSCHHHHHHHHHHHHHTTCTTTCTT---------CS--THHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC---------cH--HHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence 4688999999999999888887321 11 2345788889999999999999999999887654
|
| >2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=92.18 E-value=0.051 Score=45.99 Aligned_cols=57 Identities=32% Similarity=0.504 Sum_probs=45.5
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
..+.++|.+..+++....++|+... . .+.+.|..+.+||++|+++.+|..||.+++.
T Consensus 28 ~as~~eIk~ayr~l~~~~HPDk~~~---------~---~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~ 84 (88)
T 2cug_A 28 TASQADIKKAYKKLAREWHPDKNKD---------P---GAEDRFIQISKAYEILSNEEKRTNYDHYGSG 84 (88)
T ss_dssp TCCHHHHHHHHHHHHHHSCTTTCCS---------T---THHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC---------h---hHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence 4678999999999988888886321 0 1335678889999999999999999998764
|
| >2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A | Back alignment and structure |
|---|
Probab=91.41 E-value=0.12 Score=41.88 Aligned_cols=54 Identities=37% Similarity=0.514 Sum_probs=43.4
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~ 643 (945)
..+.++|.+..+++....++|+.. .....|..+.+||++|+++.+|+.||.+|+
T Consensus 19 ~a~~~eIk~ayr~l~~~~HPD~~~--------------~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~ 72 (73)
T 2och_A 19 DASDNELKKAYRKMALKFHPDKNP--------------DGAEQFKQISQAYEVLSDEKKRQIYDQGGE 72 (73)
T ss_dssp TCCHHHHHHHHHHHHHHTCTTTCT--------------TCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCc--------------CHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 467899999999988888888631 113467788999999999999999999875
|
| >2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
Probab=90.98 E-value=0.061 Score=47.58 Aligned_cols=61 Identities=31% Similarity=0.448 Sum_probs=48.4
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
..+.+||.+..+++....++|+... . ..+.+.|..+.+||++|+++.+|+.||.++..|+.
T Consensus 28 ~as~~eIk~aYr~la~~~HPDk~~~---------~--~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~~ 88 (109)
T 2ctw_A 28 NATSDDIKKSYRKLALKYHPDKNPD---------N--PEAADKFKEINNAHAILTDATKRNIYDKYGSLGLY 88 (109)
T ss_dssp TCCHHHHHHHHHHHHHHSCTTTSTT---------C--HHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCC---------c--HHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccccc
Confidence 4688999999999999888887421 0 01345788889999999999999999999877643
|
| >2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=90.64 E-value=0.2 Score=44.26 Aligned_cols=59 Identities=22% Similarity=0.327 Sum_probs=44.6
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcc
Q psy2902 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 577 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~ 643 (945)
++.+||.+..+++....++|+... .+....+...+..+++||++|+++.+|+.||.++.
T Consensus 28 ~s~~eIk~aYr~l~~~~HPDk~~~--------~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~ 86 (109)
T 2qsa_A 28 FDKQKLAKAYRALARKHHPDRVKN--------KEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLD 86 (109)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGCCS--------HHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCC--------ccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhcc
Confidence 488999999999999899995321 00001123477888999999999999999999764
|
| >1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5 | Back alignment and structure |
|---|
Probab=90.61 E-value=19 Score=37.81 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccc--cHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhh
Q psy2902 379 VDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTR--MPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGS 450 (945)
Q Consensus 379 ~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~--~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~ 450 (945)
...++++..+.+-..+...-. . +.+.|+|.||.+. .|++.+.+++.+ ..|+.+.+.|||++|.
T Consensus 228 A~~i~~~~~~~L~~~l~~l~~-~-~p~~VvlgGgv~~~~~~~l~~~l~~~i-------~~~~~~~~~GAa~la~ 292 (305)
T 1zc6_A 228 ADALLRQAGEDAWAIARALDP-Q-DELPVALCGGLGQALRDWLPPGFRQRL-------VAPQGDSAQGALLLLQ 292 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHCT-T-CCSCEEEESHHHHHTGGGSCHHHHHHC-------CCCSSCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHhc-C-CCCeEEEECCchHhHHHHHHHHHHhhc-------cCCCCCHHHHHHHHHh
Confidence 344455555555555544322 2 5678999999875 566777776653 1256788999999885
|
| >3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=88.20 E-value=1.3 Score=47.17 Aligned_cols=78 Identities=17% Similarity=0.243 Sum_probs=47.8
Q ss_pred HHHHHHHHHHcCCccceecchhHHHHHHhccCCCCC-CCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCc
Q psy2902 220 RQATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGK-SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLG 298 (945)
Q Consensus 220 r~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~-~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lG 298 (945)
.+.+.++-+..|+++-.+-.|-+|...+.+...... .....+|+|+|||+|.+++++- +.+.. .....+|
T Consensus 92 ~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~~~~~~lviDIGGGStEl~~~~~------~~~~~---~~Sl~lG 162 (315)
T 3mdq_A 92 QVLIDRIKKEVNIDVEVIDGAREAELIFRGVQQAVPMEDHISLAMDIGGGSVEFIIGNK------NEILW---KQSFEIG 162 (315)
T ss_dssp HHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHSCCTTCCEEEEEECSSCEEEEEECS------SCEEE---EEEESCC
T ss_pred HHHHHHHHHHHCCCeEEeCHHHHHHHHHHHHHhcCCCCCCCEEEEEeCCCceEEEEEEC------CeEee---eEEEech
Confidence 345566666789987555566666544444322211 2457999999999999999852 22221 1124568
Q ss_pred hHHHHHHH
Q psy2902 299 GEDFDQRI 306 (945)
Q Consensus 299 G~~iD~~l 306 (945)
...+.+.+
T Consensus 163 ~vrl~e~f 170 (315)
T 3mdq_A 163 GQRLIDRF 170 (315)
T ss_dssp HHHHHHHS
T ss_pred hhHHHHHh
Confidence 77776654
|
| >2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C | Back alignment and structure |
|---|
Probab=87.46 E-value=0.12 Score=49.56 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcc
Q psy2902 579 EEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGH 643 (945)
Q Consensus 579 ~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~ 643 (945)
.+||.+..+++....++|+.. +.+.+..+++||++|+++.+|+.||.+|.
T Consensus 27 ~~eIKkAYRkLa~~~HPDk~~---------------~~e~F~~I~~AYevLsdp~kR~~YD~~G~ 76 (174)
T 2pf4_E 27 IPLMRKAYLKKCKEFHPDKGG---------------DEEKMKKMNTLYKKMEDGVKYAHQPDFGG 76 (174)
T ss_dssp HHHHHHHHHHHGGGCSCC------------------CCTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred HHHHHHHHHHHHHHHCcCCCC---------------CHHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence 577777777777777777621 13578889999999999999999999875
|
| >3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A | Back alignment and structure |
|---|
Probab=87.28 E-value=1.9 Score=45.54 Aligned_cols=41 Identities=20% Similarity=0.163 Sum_probs=27.5
Q ss_pred ccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE
Q psy2902 233 EVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 233 ~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
+.-....-|.|.|....... ....+++|+|+.|||+..+.-
T Consensus 106 p~~~aaanw~ASa~~~A~~~----~~~~llvDIGsTTTDIipi~~ 146 (334)
T 3cet_A 106 NMKVSASNWCGTAKWVSKNI----EENCILVDMGSTTTDIIPIVE 146 (334)
T ss_dssp GGGTBCCSSHHHHHHHHHHT----CSSEEEEEECSSCEEEEEEET
T ss_pred HHHHHhcCHHHHHHHHHHhc----CCCEEEEEcCcchhhhhhhcC
Confidence 33445677777776332221 124789999999999999873
|
| >3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=8.3 Score=44.36 Aligned_cols=184 Identities=17% Similarity=0.190 Sum_probs=93.4
Q ss_pred CCCcEEEEc-CCCCCHHHHHHH--HHHHHHcCCccceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEEEe
Q psy2902 203 EITEAVITV-PAYFNDAQRQAT--KDAGRIAGLEVKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEIAD 279 (945)
Q Consensus 203 ~~~~~VitV-Pa~~~~~qr~~l--~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~~~ 279 (945)
+++.+++|. |..|+....-.. +..|...|++.+ -++.-.|-+++.........+ +++-+.||++.+..+.
T Consensus 72 ~id~ia~~~gPG~~~~l~vg~~~ak~la~~~~~p~~-~v~h~~aH~~~~~~~~~~~~p---~~l~vsGg~t~~~~~~--- 144 (540)
T 3en9_A 72 EIDLIAFSQGPGLGPSLRVTATVARTLSLTLKKPII-GVNHCIAHIEIGKLTTEAEDP---LTLYVSGGNTQVIAYV--- 144 (540)
T ss_dssp GCCEEEEEEESSCHHHHHHHHHHHHHHHHHHTCCEE-EEEHHHHHHHHHHHHSSCSSC---EEEEECSSCEEEEEEE---
T ss_pred HCcEEEEecCCCchhhHHHHHHHHHHHHHHhCCCee-EeccHHHHHHHHHHhcCCCCC---cEEEEcCCCcEEEEEe---
Confidence 467777777 877764432221 233444576654 456666665544333322223 4455667777665443
Q ss_pred ecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHHHHHHhcCCcceeeeeceeecc
Q psy2902 280 VDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMS 359 (945)
Q Consensus 280 ~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~i~i~~~~~~ 359 (945)
.+.+++++..-+.. -|+.||..- .. .+......+ .|...|... . ..+.+|.....
T Consensus 145 ---~~~~~~lg~t~d~s-~G~~~D~~a-~~--------lgl~~~gg~----~ie~lA~~g------~--~~~~~p~~~~~ 199 (540)
T 3en9_A 145 ---SKKYRVFGETLDIA-VGNCLDQFA-RY--------VNLPHPGGP----YIEELARKG------K--KLVDLPYTVKG 199 (540)
T ss_dssp ---TTEEEEEEEBSSSC-HHHHHHHHH-HH--------TTCCSSCHH----HHHHHHHTC------C--CCCCCCCCEET
T ss_pred ---CCceEEEeeccchH-hHHHHHHHH-HH--------cCCCCCCHH----HHHHHHHcC------C--ccCcCCCCCCC
Confidence 36788888766443 567776432 21 233222111 222222211 1 11222222111
Q ss_pred CCCCeEEEEE-------------EcHHHHHHHHHH-HHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHH
Q psy2902 360 NGAPVHLNLK-------------ITRAKLELLVDE-LITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKE 425 (945)
Q Consensus 360 ~~~~~~~~~~-------------itr~~~e~~~~~-~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~ 425 (945)
. ++++. .+.+++-..++. +++.+.+.+..+++..+ ++.|+|+||-+....+++.+.+
T Consensus 200 ~----~~sfsgl~~~~~~~~~~~~~~~~ia~~fq~~~~~~l~~~~~~a~~~~~-----~~~~~~~GGVa~N~~l~~~l~~ 270 (540)
T 3en9_A 200 M----DIAFSGLLTAAMRAYDAGERLEDICYSLQEYAFSMLTEITERALAHTN-----KGEVMLVGGVAANNRLREMLKA 270 (540)
T ss_dssp T----EECCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CSEEEEESGGGGCHHHHHHHHH
T ss_pred c----ceecHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEEeCcHHhHHHHHHHHHH
Confidence 0 11110 112333322222 33344455556666654 4699999999999999999998
Q ss_pred Hh
Q psy2902 426 FF 427 (945)
Q Consensus 426 ~f 427 (945)
.+
T Consensus 271 ~~ 272 (540)
T 3en9_A 271 MC 272 (540)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} | Back alignment and structure |
|---|
Probab=84.97 E-value=1.8 Score=46.60 Aligned_cols=83 Identities=19% Similarity=0.180 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCccceecchhHHHHHHhccCCCCC---CCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCC
Q psy2902 221 QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGK---SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFL 297 (945)
Q Consensus 221 ~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~---~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~l 297 (945)
+.+.++-+..|+++-.+-.|-+|...+.+...... ....++|+|+|||+|+++++.-......+.+. ......+
T Consensus 106 ~fl~~v~~~tGi~ieVIsG~eEA~l~~~gv~~~~~~~~~~~~~lviDIGGGStel~~~~~~~~~~~~~~~---~~~Slpl 182 (343)
T 3cer_A 106 EFEDEIERILGVRPEVIPGTEEADLSFLGATSVVNRDDLPAPYLVVDLGGGSTELVIGGDGVSAPTTQVQ---GAFSMNI 182 (343)
T ss_dssp HHHHHHHHHHSSCCEECCHHHHHHHHHHHHHSSCCTTTCCSSEEEEEECSSCEEEEECCCSSSSCTTSCS---EEEEESC
T ss_pred HHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhCccccccCCEEEEEeCCCceEEEEeecCccCcccccc---eeEEEeh
Confidence 45566666779986544445555444444322212 34569999999999999987420000001010 0112457
Q ss_pred chHHHHHHH
Q psy2902 298 GGEDFDQRI 306 (945)
Q Consensus 298 GG~~iD~~l 306 (945)
|+..+.+.+
T Consensus 183 G~v~lt~~~ 191 (343)
T 3cer_A 183 GSVRMTERH 191 (343)
T ss_dssp CHHHHHHHT
T ss_pred hHHHHHHHh
Confidence 998888765
|
| >1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 | Back alignment and structure |
|---|
Probab=84.86 E-value=0.28 Score=41.93 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=43.9
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
..+.+||.+..+++....++|+.... ...+..-.+...|..|.+||++|+++.+|+.||...
T Consensus 27 ~as~~eIk~aYr~l~~~~HPDk~~~~-----~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l 88 (94)
T 1wjz_A 27 SANMSDLKQKYQKLILLYHPDKQSAD-----VPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp TCCHHHHHHHHHHTTSSSCSTTCCTT-----CCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCC-----CChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHc
Confidence 46788999999888888888873200 000000123357888899999999999999999864
|
| >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* | Back alignment and structure |
|---|
Probab=83.68 E-value=2.5 Score=48.36 Aligned_cols=111 Identities=19% Similarity=0.184 Sum_probs=60.7
Q ss_pred hHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHH------HHHHHHHHHcCCccceecchhHHHHHHhccCCCCCC
Q psy2902 183 QISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQR------QATKDAGRIAGLEVKRIINEPTAAALAFGLDKSGKS 256 (945)
Q Consensus 183 ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr------~~l~~Aa~~AGl~~v~li~Ep~AAAl~~~~~~~~~~ 256 (945)
+.+...+..|....+..-...+.++.+ .-|..-| +.+.++-+..|+++-.+-.|-+|...+.+.......
T Consensus 60 eai~r~~~~L~~f~~~~~~~~v~~v~~----vATsA~R~A~N~~~fl~~i~~~tG~~i~vIsG~eEA~l~~~gv~~~~~~ 135 (513)
T 1u6z_A 60 EAMTRGLNCLSLFAERLQGFSPASVCI----VGTHTLRQALNATDFLKRAEKVIPYPIEIISGNEEARLIFMGVEHTQPE 135 (513)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCGGGEEE----EECHHHHHCTTHHHHHHHHTTTCSSCEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCEEEE----EecHHHHcCcCHHHHHHHHHHHHCCCEEEeCHHHHHHHHHHHHHhhccC
Confidence 344445555555544433344544322 1233333 444555556798865444455554444443322222
Q ss_pred CceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHH
Q psy2902 257 DRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306 (945)
Q Consensus 257 ~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l 306 (945)
....+|+|+|||+|.+++.+- +.+.. .....+|...+.+.+
T Consensus 136 ~~~~lviDIGGGStEl~~~~~------~~~~~---~~Sl~lG~vrlte~f 176 (513)
T 1u6z_A 136 KGRKLVIDIGGGSTELVIGEN------FEPIL---VESRRMGCVSFAQLY 176 (513)
T ss_dssp CSCEEEEEECSSCEEEEEEET------TEEEE---EEEESCCHHHHHHHH
T ss_pred CCCEEEEEECCCcEEEEEEeC------CeeeE---EEEEeccHHHHHHHH
Confidence 236999999999999998752 22211 122467998888776
|
| >3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} | Back alignment and structure |
|---|
Probab=82.48 E-value=0.34 Score=59.06 Aligned_cols=63 Identities=32% Similarity=0.509 Sum_probs=30.4
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCCCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGIDPN 649 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~~~ 649 (945)
..|.+||.+..+++....++|+.... ..+.+.+..+++||++|+++++|+.||.+|+.|+..+
T Consensus 32 ~a~~~~i~~ay~~l~~~~hpd~~~~~-----------~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~~~ 94 (780)
T 3apo_A 32 TASSREIRQAFKKLALKLHPDKNPNN-----------PNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLEDN 94 (780)
T ss_dssp TCCHHHHHHHHCC----------------------------------CTHHHHHHSHHHHHHHTTC--------
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCC-----------hHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccccC
Confidence 46899999999999999999984311 1234567888999999999999999999999887654
|
| >3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A | Back alignment and structure |
|---|
Probab=82.18 E-value=4.7 Score=41.18 Aligned_cols=19 Identities=37% Similarity=0.529 Sum_probs=17.0
Q ss_pred eEEEEcCccceEEEEEeCC
Q psy2902 73 IIGIDLGTTNSCVSIIEGS 91 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~ 91 (945)
+++||+|+|+++.++++++
T Consensus 5 ~L~IDIGNT~ik~gl~~~~ 23 (249)
T 3bex_A 5 YLLVDVGNTHSVFSITEDG 23 (249)
T ss_dssp EEEEEECSSEEEEEEESSS
T ss_pred EEEEEECCCeEEEEEEECC
Confidence 6999999999999999754
|
| >2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A | Back alignment and structure |
|---|
Probab=80.53 E-value=1.4 Score=49.52 Aligned_cols=56 Identities=13% Similarity=-0.027 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHcCCc--cceecchhHHHHHHhccCCCCCCCceEEEEEeCCcceEEEEEEE
Q psy2902 218 AQRQATKDAGRIAGLE--VKRIINEPTAAALAFGLDKSGKSDRNIVVYDLGGGTFDVSIIEI 277 (945)
Q Consensus 218 ~qr~~l~~Aa~~AGl~--~v~li~Ep~AAAl~~~~~~~~~~~~~vlVvD~GggT~dvsv~~~ 277 (945)
.-++.+.++....|++ ++.++++..|++++..+.. .++++.+=+|.|+=-..+...
T Consensus 164 ~v~~~L~~~l~r~glpv~vval~NDa~~tll~e~~~~----~~~~iglilGTGvgg~~i~~~ 221 (457)
T 2yhx_A 164 KLISAMXNAXFPAGDXXXSVADIXDSHGILXXVNYTD----AXIKMGIIFGSGVNAAYWCDS 221 (457)
T ss_dssp SBHHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHC----TTEEEEEEESSSEEEEEEECG
T ss_pred HHHHHHHHhHhhcCCcceeEEEEecchhhccchhhcC----CccEEEEEECcEEEEEEEECC
Confidence 5677888888666775 4789999999999876632 456777779998665555544
|
| >3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A | Back alignment and structure |
|---|
Probab=80.40 E-value=0.41 Score=46.34 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=44.5
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
+..+.++|.+..+++....++|+.. . +...|..+++||++|+|+.+|..||..-
T Consensus 28 ~~a~~~eIk~aYr~la~~~HPDk~~---------~-----a~~~f~~i~~AY~vL~dp~~R~~Yd~~l 81 (181)
T 3uo3_A 28 WTIDQSRLRKEYRQLQAQHHPDMAQ---------Q-----GSEQSSTLNQAYHTLKDPLRRSQYMLKL 81 (181)
T ss_dssp SCCCHHHHHHHHHHHHHTCCTTSCC---------S-----CSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCcCCCc---------c-----HHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence 3578899999999988888888721 1 4568889999999999999999999743
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 945 | ||||
| d1dkgd2 | 198 | c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATP | 2e-84 | |
| d1dkgd1 | 183 | c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPas | 6e-84 | |
| d1bupa1 | 185 | c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPas | 4e-72 | |
| d1bupa2 | 193 | c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATP | 4e-71 | |
| d1yuwa1 | 159 | b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus | 3e-65 | |
| d1dkza2 | 118 | b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxI | 5e-52 | |
| d1u00a2 | 115 | b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc6 | 2e-46 | |
| d1jcea1 | 137 | c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB | 9e-30 | |
| d1jcea2 | 196 | c.55.1.1 (A:141-336) Prokaryotic actin homolog Mre | 4e-29 | |
| d2zgya2 | 163 | c.55.1.1 (A:158-320) Plasmid segregation protein P | 2e-26 | |
| d1exka_ | 79 | g.54.1.1 (A:) Cysteine-rich domain of the chaperon | 1e-23 | |
| d1m1qa_ | 90 | a.138.1.3 (A:) Flavocytochrome c3 (respiratory fum | 6e-19 | |
| d1nlta3 | 74 | g.54.1.1 (A:139-212) Mitochondrial protein import | 9e-19 | |
| d1c3ga2 | 90 | b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Ba | 3e-18 | |
| d1nlta2 | 80 | b.4.1.1 (A:258-337) Mitochondrial protein import p | 4e-18 | |
| d2fsja1 | 161 | c.55.1.12 (A:165-325) Hypothetical protein Ta0583 | 2e-15 | |
| d1c3ga1 | 80 | b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba | 1e-14 | |
| d1c3ga1 | 80 | b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Ba | 2e-04 | |
| d1dkza1 | 97 | a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: | 4e-14 | |
| d1u00a1 | 112 | a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) | 4e-11 | |
| d1nlta1 | 74 | b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei | 1e-08 | |
| d1nlta1 | 74 | b.4.1.1 (A:110-138,A:213-257) Mitochondrial protei | 2e-06 | |
| d1xbla_ | 75 | a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain | 1e-07 | |
| d1hdja_ | 77 | a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9 | 4e-07 | |
| d1wjza_ | 94 | a.2.3.1 (A:) CSL-type zinc finger-containing prote | 2e-05 | |
| d1gh6a_ | 114 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 4e-05 | |
| d1e4ft2 | 191 | c.55.1.1 (T:200-390) Cell division protein FtsA {T | 7e-05 | |
| d1qo8a1 | 101 | a.138.1.3 (A:2-102) Flavocytochrome c3 (respirator | 1e-04 | |
| d1fafa_ | 79 | a.2.3.1 (A:) Large T antigen, the N-terminal J dom | 4e-04 | |
| d1nz6a_ | 98 | a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T | 0.001 | |
| d1iura_ | 88 | a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human | 0.002 | |
| d1fpoa1 | 76 | a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma | 0.004 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 267 bits (685), Expect = 2e-84
Identities = 129/197 (65%), Positives = 168/197 (85%)
Query: 257 DRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNK 316
+R I VYDLGGGTFD+SIIEI +VDGEK FEVL+TNGDT LGGEDFD R+I+Y+++EF K
Sbjct: 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKK 61
Query: 317 INGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLE 376
GIDLR D +A+QR+K +AE+AKIELSS++QT++N PYI P H+N+K+TRAKLE
Sbjct: 62 DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDIN 436
LV++L+ R+IE ++A++DAG+ VSDI+D+ILVGG TRMP VQ+KV EFFGK+PR+D+N
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 437 PDEAVAVGAAIQGSVLS 453
PDEAVA+GAA+QG VL+
Sbjct: 182 PDEAVAIGAAVQGGVLT 198
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Length = 183 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Score = 265 bits (679), Expect = 6e-84
Identities = 142/181 (78%), Positives = 170/181 (93%)
Query: 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNP 131
KIIGIDLGTTNSCV+I++G+ P+V+EN+EG RTTPS+IAY ++GE LVG PAKRQAVTNP
Sbjct: 1 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 132 KNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRK 191
+NT++A KRLIGR+F ++EVQ+D+S+MP+KI+ ADNGDAW+ V+G+K+APPQISAEVL+K
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKK 120
Query: 192 MKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGLD 251
MKKTAEDYLG +TEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA+GLD
Sbjct: 121 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 180
Query: 252 K 252
K
Sbjct: 181 K 181
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 185 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 233 bits (596), Expect = 4e-72
Identities = 97/185 (52%), Positives = 127/185 (68%), Gaps = 6/185 (3%)
Query: 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNP 131
+GIDLG+T SCV + + + ++I N +G RTTPS +A+ + E L+G AK Q NP
Sbjct: 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 60
Query: 132 KNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVR----GKKLAPPQISAE 187
NT++ AKRLIGR+F++ VQ D+ P+ +V D G + V K P ++S+
Sbjct: 61 TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSM 119
Query: 188 VLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALA 247
VL KMK+ AE YLG +T AV+TVPAYFND+QRQATKDAG IAGL V RIINEPTAAA+A
Sbjct: 120 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 179
Query: 248 FGLDK 252
+GLDK
Sbjct: 180 YGLDK 184
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Score = 231 bits (591), Expect = 4e-71
Identities = 89/199 (44%), Positives = 133/199 (66%), Gaps = 9/199 (4%)
Query: 256 SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFN 315
++RN++++DLGGGTFDVSI+ I D FEV ST GDT LGGEDFD R++++ + EF
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIED----GIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 316 KINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKL 375
+ + D+ ++ A++R++ + ERAK LSSS Q I + + ITRA+
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYE----GIDFYTSITRARF 114
Query: 376 ELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFF-GKDPRRD 434
E L +L T++P A++DA + S I+DI+LVGG TR+PK+Q+ +++FF GK+ +
Sbjct: 115 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 174
Query: 435 INPDEAVAVGAAIQGSVLS 453
INPDEAVA GAA+Q ++LS
Sbjct: 175 INPDEAVAYGAAVQAAILS 193
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 214 bits (545), Expect = 3e-65
Identities = 99/159 (62%), Positives = 124/159 (77%), Gaps = 1/159 (0%)
Query: 453 SGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQ 512
S + +DLLLLDVTPLSLGIET GG+MT +IK+NTTIPTK +Q F+T DNQP V ++VY+
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 513 GEREMVSGNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIK 572
GER M N +LG+F L GIPPA RG+PQIEVTFDIDANGIL+V+A DK TGKENKITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 573 ANSG-LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610
+ G L++E+I++MVQ AE ED++ R+ S+N E
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} Length = 118 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 175 bits (445), Expect = 5e-52
Identities = 90/117 (76%), Positives = 103/117 (88%)
Query: 460 LLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVS 519
LLLDVTPLSLGIETMGG+MT +I KNTTIPTK SQVFSTAEDNQ AV++ V QGER+ +
Sbjct: 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAA 61
Query: 520 GNKILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG 576
NK LG+FNL+GI PA RG+PQIEVTFDIDA+GILHV+AKDK +GKE KITIKA+SG
Sbjct: 62 DNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 115 | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 159 bits (403), Expect = 2e-46
Identities = 57/115 (49%), Positives = 77/115 (66%)
Query: 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGN 521
+DV PLSLG+ETMGG++ K+I +NTTIP +Q F+T +D Q A+++ V QGERE+V
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 522 KILGEFNLEGIPPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANSG 576
+ L F L GIP G I VTF +DA+G+L VTA +K TG E I +K + G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 137 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 112 bits (282), Expect = 9e-30
Identities = 45/181 (24%), Positives = 63/181 (34%), Gaps = 45/181 (24%)
Query: 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQEN-GEILVGAPAKRQAVTN 130
K IGIDLGT N+ V + ++ N PSVIA GEIL + +
Sbjct: 1 KDIGIDLGTANTLVFLRGK---GIVVNE------PSVIAIDSTTGEILKVGLEAKNMIGK 51
Query: 131 PKNTIYAAKRLIGRKFNEKEVQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLR 190
TI A + + ++ +LR
Sbjct: 52 TPATIKAIRPMRDGVIA---------------------------------DYTVALVMLR 78
Query: 191 KMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAFGL 250
A+ + VI VP D +R+A DAG AG +I EP AAA+ G
Sbjct: 79 YFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GS 136
Query: 251 D 251
+
Sbjct: 137 N 137
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Score = 113 bits (282), Expect = 4e-29
Identities = 30/194 (15%), Positives = 69/194 (35%), Gaps = 21/194 (10%)
Query: 257 DRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNK 316
+V D+GGGT +V++I + + T + G++ D+ I+ Y+ + +
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIV---------TWESIRIAGDEMDEAIVQYVRETYRV 56
Query: 317 INGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLE 376
G + ++ E+ + + L + ++
Sbjct: 57 AIGERTAERVKIEIGNVFPSKEND---------ELETTVSGIDLSTGLPRKLTLKGGEVR 107
Query: 377 LLVDELITRTIEPCRIAIKDAGIKVS---DINDIILVGGMTRMPKVQEKVKEFFGKDPRR 433
+ ++ +E R ++ ++ I L GG + + + +++ G R
Sbjct: 108 EALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIR 167
Query: 434 DINPDEAVAVGAAI 447
P AVA GA +
Sbjct: 168 SEEPLTAVAKGAGM 181
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Score = 104 bits (259), Expect = 2e-26
Identities = 28/199 (14%), Positives = 59/199 (29%), Gaps = 42/199 (21%)
Query: 255 KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEF 314
++++ DLGG T D+S + K + GD+ LG + D +
Sbjct: 4 DELDSLLIIDLGGTTLDISQVM------GKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 57
Query: 315 NKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAK 374
K + I + +L +I
Sbjct: 58 TK-------------------------------GSSYLADDIIIHRKDNNYLKQRINDEN 86
Query: 375 LELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRD 434
+V E + + + + + S ++++GG + + + VK+ R
Sbjct: 87 KISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDERF 144
Query: 435 I---NPDEAVAVGAAIQGS 450
N + G + G+
Sbjct: 145 FKTNNSQYDLVNGMYLIGN 163
|
| >d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} Length = 79 | Back information, alignment and structure |
|---|
class: Small proteins fold: DnaJ/Hsp40 cysteine-rich domain superfamily: DnaJ/Hsp40 cysteine-rich domain family: DnaJ/Hsp40 cysteine-rich domain domain: Cysteine-rich domain of the chaperone protein DnaJ species: Escherichia coli [TaxId: 562]
Score = 92.9 bits (230), Expect = 1e-23
Identities = 42/79 (53%), Positives = 57/79 (72%)
Query: 706 GFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765
G IR+P+ + C C+G+GAK GT P +C TC G GQV+M+QGFF++QQTCP CQG G
Sbjct: 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRG 60
Query: 766 KVIPHPCLDCNGIGRIKRN 784
+I PC C+G GR++R+
Sbjct: 61 TLIKDPCNKCHGHGRVERS 79
|
| >d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} Length = 90 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Di-heme elbow motif domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain species: Shewanella oneidensis [TaxId: 70863]
Score = 80.2 bits (197), Expect = 6e-19
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 7/71 (9%)
Query: 719 CKSCYGNG---AKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHP 771
C+SC+ +G A C +C G+ + C
Sbjct: 14 CESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPT 73
Query: 772 CLDCNGIGRIK 782
C C+ GR
Sbjct: 74 CESCHDDGRTS 84
|
| >d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 | Back information, alignment and structure |
|---|
class: Small proteins fold: DnaJ/Hsp40 cysteine-rich domain superfamily: DnaJ/Hsp40 cysteine-rich domain family: DnaJ/Hsp40 cysteine-rich domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 79.0 bits (194), Expect = 9e-19
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 718 ICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIP--HP 771
+CK C G G KKG C +C+GQG + + Q C C G G +I
Sbjct: 4 LCKECEGRGGKKGAVK-KCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDR 62
Query: 772 CLDCNGIGRIK 782
C CNG
Sbjct: 63 CKSCNGKKVEN 73
|
| >d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 90 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Heat shock protein 40 Sis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 78.5 bits (193), Expect = 3e-18
Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 2/88 (2%)
Query: 831 FERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAF-FVIPEGTQSGKIFRLRGKGIKNIR 889
F+RDGDDL Y +P+SF + LG T++G+ + Q + G+G+ +
Sbjct: 2 FKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPK 61
Query: 890 -SSIPGDLFCHVTIETPVQLTEYQKKLL 916
S G+L ++ P+ L + QK+ +
Sbjct: 62 NPSQRGNLIVKYKVDYPISLNDAQKRAI 89
|
| >d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 77.7 bits (191), Expect = 4e-18
Identities = 27/78 (34%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 831 FERDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFV---IPEGTQSGKIFRLRGKGIKN 887
F+RDGDDL YE I TA GGE ++G V E G + GKG+
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 888 IRSSIPGDLFCHVTIETP 905
+ G+L TI+ P
Sbjct: 62 PKYGGYGNLIIKFTIKDP 79
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 72.5 bits (177), Expect = 2e-15
Identities = 29/192 (15%), Positives = 61/192 (31%), Gaps = 43/192 (22%)
Query: 255 KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEF 314
+ VV D+G T DV I + D++ V+ + +G D + I E
Sbjct: 3 QQPGYGVVIDVGSRTTDVLTINLMDME-----PVVELSFSLQIGVGDAISALSRKIAKET 57
Query: 315 NKINGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAK 374
+ DL ++ + ++ +++
Sbjct: 58 GFVVPFDLAQE---ALSHPVMFRQKQVGGP------------------------EVSGPI 90
Query: 375 LELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRD 434
LE L + +I R + + +I VGG + + + ++ +E +
Sbjct: 91 LEDLANRIIENIRLNLRGEVD-------RVTSLIPVGGGSNL--IGDRFEEIAPGTLVKI 141
Query: 435 I--NPDEAVAVG 444
+ A A+G
Sbjct: 142 KPEDLQFANALG 153
|
| >d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Heat shock protein 40 Sis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 67.6 bits (165), Expect = 1e-14
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 3/68 (4%)
Query: 761 CQGAGKVIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLY 820
G K +G +++++ G + +I G+ G L
Sbjct: 15 FVGKKKSFKIGRKGPHGASE---KTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQ 71
Query: 821 IEIHIKPH 828
I K H
Sbjct: 72 FVIQEKSH 79
|
| >d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 80 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Heat shock protein 40 Sis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (90), Expect = 2e-04
Identities = 9/77 (11%), Positives = 26/77 (33%), Gaps = 9/77 (11%)
Query: 836 DDLHYEMPISFSTAALGGEIE------APTLNGKAFFV---IPEGTQSGKIFRLRGKGIK 886
+ + +P+S +G + P + + + G ++G + +G
Sbjct: 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDY 60
Query: 887 NIRSSIPGDLFCHVTIE 903
N ++ L + +
Sbjct: 61 NPQTGRRKTLQFVIQEK 77
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} Length = 97 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Score = 66.7 bits (163), Expect = 4e-14
Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 2/61 (3%)
Query: 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRI 636
L E+EI+KMV+ AEANAE D++ EL ++RN G+ L+HST+K + +EA + L +K
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQV--EEAGDKLPADDKTA 58
Query: 637 I 637
I
Sbjct: 59 I 59
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} Length = 112 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Score = 58.4 bits (141), Expect = 4e-11
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRI 636
LT+ EI M++ + + AE+D + R LAE + ++ S +L +LS +E+++
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGAL--AADAALLSAAERQV 58
Query: 637 I 637
I
Sbjct: 59 I 59
|
| >d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 50.9 bits (121), Expect = 1e-08
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 1/71 (1%)
Query: 833 RDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSI 892
+ G D+ +E+ S G + + G + G+ +G+ + I
Sbjct: 2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQA-PDVI 60
Query: 893 PGDLFCHVTIE 903
PGD+ V+
Sbjct: 61 PGDVVFIVSER 71
|
| >d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 74 | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.9 bits (103), Expect = 2e-06
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 772 CLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHK 829
K LEV + G+++ RI G + + G++ + +PHK
Sbjct: 18 LYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAPDVI-PGDVVFIVSERPHK 74
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 47.3 bits (112), Expect = 1e-07
Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
E EI+K + D+ N G+ + K +IKEAYEVL+DS+KR
Sbjct: 16 EEREIRKAYKRLAMKYHPDR---------NQGDK--EAEAKFKEIKEAYEVLTDSQKRAA 64
Query: 638 YDQYGHAGID 647
YDQYGHA +
Sbjct: 65 YDQYGHAAFE 74
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (109), Expect = 4e-07
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 12/72 (16%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
++EEIK+ + ++ +N + +K +I EAY+VLSD KR I
Sbjct: 16 SDEEIKRAYR---------RQALRYHPDKNKEP---GAEEKFKEIAEAYDVLSDPRKREI 63
Query: 638 YDQYGHAGIDPN 649
+D+YG G+ +
Sbjct: 64 FDRYGEEGLKGS 75
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 42.0 bits (98), Expect = 2e-05
Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
++K+ Q DK+ + ++ +K ++I +A+++L + E +
Sbjct: 29 NMSDLKQKYQKLILLYHPDKQ-----SADVPAGTMEECMQKFIEIDQAWKILGNEETKKK 83
Query: 638 YDQYGH 643
YD
Sbjct: 84 YDLQRS 89
|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Simian virus 40, Sv40 [TaxId: 10633]
Score = 41.7 bits (97), Expect = 4e-05
Identities = 11/95 (11%), Positives = 28/95 (29%), Gaps = 6/95 (6%)
Query: 587 QSAEANAEEDKR-LRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645
+SA N ++ + + +K K+ Y+ + D K +G
Sbjct: 18 RSAWGNIPLMRKAYLKKC--KEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGFW 75
Query: 646 IDPNMSGSSASAEASNFADA-FGDIFG--DIFGSN 677
+ + ++F ++ S+
Sbjct: 76 DATEIPTYGTDEWEQWWNAFNEENLFCSEEMPSSD 110
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Score = 42.6 bits (99), Expect = 7e-05
Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 23/188 (12%)
Query: 257 DRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNK 316
DR +VV +LG + + +G +G + + + + F +
Sbjct: 6 DRGVVVVNLGYNFTGLIAYK----NGVPIK-----ISYVPVGMKHVIKDVSAVLDTSFEE 56
Query: 317 INGIDLRKDSIALQRIKASAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLE 376
+R+ + A ++ + I A+L
Sbjct: 57 S------------ERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLR 104
Query: 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDIN 436
++ + I + G ++L GG ++P++ E E F R
Sbjct: 105 EIM-SKSKKFFREVEAKIVEEGEI-GIPGGVVLTGGGAKIPRINELATEVFKSPVRTGCY 162
Query: 437 PDEAVAVG 444
+
Sbjct: 163 ANSDRPSI 170
|
| >d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Murine polyomavirus [TaxId: 10634]
Score = 37.7 bits (87), Expect = 4e-04
Identities = 2/72 (2%), Positives = 14/72 (19%), Gaps = 15/72 (20%)
Query: 571 IKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLS 630
+ +++ ++ + S ++ +
Sbjct: 19 LPRQLWGDFGRMQQ-------------AYKQQS--LLLHPDKGGSHALMQELNSLWGTFK 63
Query: 631 DSEKRIIYDQYG 642
+ + G
Sbjct: 64 TEVYNLRMNLGG 75
|
| >d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Auxilin J-domain species: Cow (Bos taurus) [TaxId: 9913]
Score = 36.8 bits (85), Expect = 0.001
Identities = 7/61 (11%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRII 637
T E++KK L + ++ +++ +A+ + ++ +
Sbjct: 46 TPEQVKK--------VYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPL 97
Query: 638 Y 638
Y
Sbjct: 98 Y 98
|
| >d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]} Length = 88 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Hypothetical protein KIAA0730 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.2 bits (83), Expect = 0.002
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 13/69 (18%)
Query: 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRI 636
L E E KK++ +RL + E+ + + ++ L EK+
Sbjct: 28 LPESERKKII----------RRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQA 74
Query: 637 IYDQYGHAG 645
DQ
Sbjct: 75 FLDQNADRA 83
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Score = 35.0 bits (80), Expect = 0.004
Identities = 11/69 (15%), Positives = 23/69 (33%), Gaps = 6/69 (8%)
Query: 571 IKANSGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLS 630
+ A L + + Q + DK + + + ++S I +A++ L
Sbjct: 9 LPARYQLDTQALSLRFQDLQRQYHPDKF------ASGSQAEQLAAVQQSATINQAWQTLR 62
Query: 631 DSEKRIIYD 639
R Y
Sbjct: 63 HPLMRAEYL 71
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 945 | |||
| d1dkgd2 | 198 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1dkgd1 | 183 | Heat shock protein 70kDa, ATPase fragment {Escheri | 100.0 | |
| d1bupa2 | 193 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 100.0 | |
| d1bupa1 | 185 | Heat shock protein 70kDa, ATPase fragment {Cow (Bo | 99.97 | |
| d1yuwa1 | 159 | DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | 99.96 | |
| d1dkza2 | 118 | DnaK {Escherichia coli [TaxId: 562]} | 99.89 | |
| d1u00a2 | 115 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 99.88 | |
| d1c3ga2 | 90 | Heat shock protein 40 Sis1 {Baker's yeast (Sacchar | 99.83 | |
| d1jcea1 | 137 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.78 | |
| d1jcea2 | 196 | Prokaryotic actin homolog MreB {Thermotoga maritim | 99.72 | |
| d1nlta2 | 80 | Mitochondrial protein import protein mas5 (Hsp40, | 99.72 | |
| d1exka_ | 79 | Cysteine-rich domain of the chaperone protein DnaJ | 99.4 | |
| d1c3ga1 | 80 | Heat shock protein 40 Sis1 {Baker's yeast (Sacchar | 99.35 | |
| d2zgya2 | 163 | Plasmid segregation protein ParM {Escherichia coli | 99.29 | |
| d1e4ft2 | 191 | Cell division protein FtsA {Thermotoga maritima [T | 99.28 | |
| d1nlta1 | 74 | Mitochondrial protein import protein mas5 (Hsp40, | 99.25 | |
| d1nlta1 | 74 | Mitochondrial protein import protein mas5 (Hsp40, | 99.21 | |
| d2fsja1 | 161 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 99.02 | |
| d1nlta3 | 74 | Mitochondrial protein import protein mas5 (Hsp40, | 98.95 | |
| d1c3ga2 | 90 | Heat shock protein 40 Sis1 {Baker's yeast (Sacchar | 98.84 | |
| d1nlta2 | 80 | Mitochondrial protein import protein mas5 (Hsp40, | 98.65 | |
| d1huxa_ | 259 | Hydroxyglutaryl-CoA dehydratase component A {Acida | 98.62 | |
| d1c3ga1 | 80 | Heat shock protein 40 Sis1 {Baker's yeast (Sacchar | 98.59 | |
| d1exka_ | 79 | Cysteine-rich domain of the chaperone protein DnaJ | 98.46 | |
| d1nlta3 | 74 | Mitochondrial protein import protein mas5 (Hsp40, | 97.83 | |
| d2d0oa3 | 203 | Diol dehydratase-reactivating factor large subunit | 97.82 | |
| d1nbwa3 | 202 | ATPase domain of the glycerol dehydratase reactiva | 97.81 | |
| d2fxua2 | 225 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 97.6 | |
| d1r59o2 | 235 | Glycerol kinase {Enterococcus casseliflavus [TaxId | 97.58 | |
| d1k8ka2 | 258 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 97.46 | |
| d2p3ra2 | 247 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 97.38 | |
| d1dkza1 | 97 | DnaK {Escherichia coli [TaxId: 562]} | 97.34 | |
| d1k8kb1 | 190 | Actin-related protein 2, Arp2 {Cow (Bos taurus) [T | 97.29 | |
| d1u00a1 | 112 | Chaperone protein hscA (Hsc66) {Escherichia coli [ | 96.98 | |
| d2fxua1 | 140 | Actin {Cow (Bos taurus) [TaxId: 9913]} | 96.42 | |
| d1k8ka1 | 158 | Actin-related protein 3, Arp3 {Cow (Bos taurus) [T | 96.23 | |
| d1hdja_ | 77 | HSP40 {Human (Homo sapiens) [TaxId: 9606]} | 96.22 | |
| d1xbla_ | 75 | DnaJ chaperone, N-terminal (J) domain {Escherichia | 95.6 | |
| d1zc6a1 | 114 | Probable N-acetylglucosamine kinase CV2896 {Chromo | 95.21 | |
| d2i7na2 | 212 | Pantothenate kinase 1, PANK1 {Human (Homo sapiens) | 94.88 | |
| d1m1qa_ | 90 | Flavocytochrome c3 (respiratory fumarate reductase | 94.37 | |
| d2p3ra1 | 252 | Glycerol kinase {Escherichia coli [TaxId: 562]} | 93.49 | |
| d1sz2a1 | 319 | Glucokinase Glk {Escherichia coli [TaxId: 562]} | 91.6 | |
| d1e4ft1 | 193 | Cell division protein FtsA {Thermotoga maritima [T | 90.67 | |
| d2ch5a2 | 117 | N-acetylglucosamine kinase, NAGK {Human (Homo sapi | 89.71 | |
| d1m1qa_ | 90 | Flavocytochrome c3 (respiratory fumarate reductase | 89.15 | |
| d2ewsa1 | 267 | Type II pantothenate kinase, CoaW {Staphylococcus | 88.72 | |
| d2fsja2 | 164 | Hypothetical protein Ta0583 {Archaeon Thermoplasma | 87.23 | |
| d1fpoa1 | 76 | HSC20 (HSCB), N-terminal (J) domain {Escherichia c | 86.75 | |
| d1wjza_ | 94 | CSL-type zinc finger-containing protein 3 (J-domai | 86.13 | |
| d1gh6a_ | 114 | Large T antigen, the N-terminal J domain {Simian v | 84.53 | |
| d1t6ca2 | 180 | Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 | 80.32 |
| >d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=1.8e-34 Score=290.55 Aligned_cols=196 Identities=66% Similarity=1.092 Sum_probs=182.2
Q ss_pred ceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Q psy2902 258 RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAE 337 (945)
Q Consensus 258 ~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 337 (945)
++|||||+||||+|+|++++........++++++.++..+||.+||++|++|+.++|.++++.+...+++.+.+|+.+||
T Consensus 3 ~~vlV~D~GggT~Dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~~e 82 (198)
T d1dkgd2 3 RTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAE 82 (198)
T ss_dssp EEEEEEEECSSCEEEEEEEEEC----CCCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHCCCSTTCHHHHHHHHHHHH
T ss_pred eEEEEEEcCCCcEEEEEEEEEccCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Confidence 57999999999999999999766667789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccH
Q psy2902 338 RAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMP 417 (945)
Q Consensus 338 ~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p 417 (945)
++|+.||.+.++.+.+|.+..+.....+++++|||++|+++++|+++++.++|.++|++++++..+|+.|+|+||+|++|
T Consensus 83 ~~K~~Ls~~~~~~i~~~~~~~~~~~~~~~~~~itr~~~~~~~~~~~~~~~~~i~~~l~~a~~~~~~Id~v~lvGG~sr~p 162 (198)
T d1dkgd2 83 KAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMP 162 (198)
T ss_dssp HHHHHTTSSSEEEEEEEEEEEETTEEEEEEEEEEHHHHHHHSHHHHHHHHHHHHHHHHTTTCCTTTCCEEEEESGGGGSH
T ss_pred HHHHHhcCCCeEEEEEeeeecCCCCCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhHCcEEEEEcCccCCH
Confidence 99999999999999999887776666688999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 418 KVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 418 ~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
++++.|++.|+.++....||++|||.|||++|+++|
T Consensus 163 ~l~~~i~~~f~~~~~~~~~p~~aVa~GAa~~aa~lS 198 (198)
T d1dkgd2 163 MVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLT 198 (198)
T ss_dssp HHHHHHHHHHSSCCBCSSCTTTHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHCCCCCCCCChHHHHHHHHHHHHHhcC
Confidence 999999999999888899999999999999999875
|
| >d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Escherichia coli, gene dnaK [TaxId: 562]
Probab=100.00 E-value=4.8e-34 Score=284.25 Aligned_cols=180 Identities=78% Similarity=1.238 Sum_probs=174.6
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEVQ 152 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~~ 152 (945)
|||||||||||+||++.++.++++.+.+|.+.+||+++|..++.+++|..|..+...+|.++++++|+|||+++.++.++
T Consensus 2 VvGIDfGTt~s~va~~~~~~~~ii~n~~~~~~~ps~v~~~~~~~~~~G~~A~~~~~~~p~~~i~~~KrllG~~~~~~~~~ 81 (183)
T d1dkgd1 2 IIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQ 81 (183)
T ss_dssp CCEEECCSSEEEEEEEETTEEEECCCTTSCSEEECEEEECTTSCEEESHHHHTTSTTCGGGEEECGGGTTTCBSCSHHHH
T ss_pred EEEEEcChhcEEEEEEECCEEEEEEcCCCcccccceeeecCCCCEEccHHHHHhhhcCCccEEeeeHHHcCCCCCcHHHH
Confidence 69999999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred hhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHcCC
Q psy2902 153 KDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIAGL 232 (945)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~AGl 232 (945)
.....+||+++..+++...+.+.++.++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++||+.|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~a~~L~~l~~~a~~~~~~~~~~~VitVPa~f~~~~r~~l~~Aa~~AG~ 161 (183)
T d1dkgd1 82 RDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGL 161 (183)
T ss_dssp HHTTTCSSEEEECSSSBEEEEETTEEECHHHHHHHHHHHHHHHHHHHHSSCCCEEEECBCTTCCHHHHHHHHHHHHHTTC
T ss_pred hhhhcCCEEEEEcCCCcEEEEECCEEECHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceecchhHHHHHHhccCC
Q psy2902 233 EVKRIINEPTAAALAFGLDK 252 (945)
Q Consensus 233 ~~v~li~Ep~AAAl~~~~~~ 252 (945)
+++.+++||+|||++|++++
T Consensus 162 ~~~~li~EP~AAAl~Ygl~k 181 (183)
T d1dkgd1 162 EVKRIINEPTAAALAYGLDK 181 (183)
T ss_dssp EESCCCBHHHHHHHHHTCCC
T ss_pred CEEEEecCHHHHHHHhcccC
Confidence 99999999999999999875
|
| >d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.7e-32 Score=275.72 Aligned_cols=190 Identities=46% Similarity=0.755 Sum_probs=177.2
Q ss_pred CCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Q psy2902 256 SDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKAS 335 (945)
Q Consensus 256 ~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~ 335 (945)
.+++|||||+||||+|+|++++ .+..++++++.++..+||.+||++|++|+.++|.++++.+...+++.+.+|+.+
T Consensus 3 ~e~~VlV~D~GggT~Dvsv~~~----~~~~~~v~~~~g~~~lGG~~~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (193)
T d1bupa2 3 AERNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTA 78 (193)
T ss_dssp SCEEEEEEEECSSCEEEEEEEE----ETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSCCCTTCHHHHHHHHHH
T ss_pred CCcEEEEEEeCCCeEEEEEEEE----eCCEEEEEEecCCCCcchhHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHH
Confidence 4678999999999999999999 667899999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccc
Q psy2902 336 AERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTR 415 (945)
Q Consensus 336 ~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~ 415 (945)
||++|+.|+.+..+.+.++.+..+. ++.+++||++|++++.|+++++.+++.++|+++++...+|+.|+||||+|+
T Consensus 79 ~e~~K~~ls~~~~~~~~~~~~~~~~----~~~~~itr~~~e~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~V~lvGG~sr 154 (193)
T d1bupa2 79 CERAKRTLSSSTQASIEIDSLYEGI----DFYTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTR 154 (193)
T ss_dssp HHHHHHHHTTSSEEEEEEEEEETTE----EEEEEEEHHHHHHHTHHHHHHTHHHHHHHHHHHTCCGGGCCEEEEESGGGG
T ss_pred HHHHhhccCCCceEEEEEecccCCC----ccceEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHCCEEEEECCccc
Confidence 9999999999999999888776543 788999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhC-CCCCCCCCCCchhhhhHHHhhhhcc
Q psy2902 416 MPKVQEKVKEFFG-KDPRRDINPDEAVAVGAAIQGSVLS 453 (945)
Q Consensus 416 ~p~v~~~l~~~fg-~~~~~~~~p~~avA~GAa~~a~~~~ 453 (945)
+|++++.|+++|+ .++..+.||++|||+|||++|++++
T Consensus 155 ~p~v~~~i~~~f~~~~i~~~~~p~~aVa~GaA~~aa~ls 193 (193)
T d1bupa2 155 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193 (193)
T ss_dssp CHHHHHHHHHHTTTCCCBCSSCGGGHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHcCCCCCCCCCChHHHHHHHHHHHHHhhC
Confidence 9999999999995 5666788999999999999999875
|
| >d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Heat shock protein 70kDa, ATPase fragment species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1e-31 Score=267.84 Aligned_cols=180 Identities=53% Similarity=0.853 Sum_probs=163.6
Q ss_pred ceEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEeeCCcEEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHHH
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQENGEILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKEV 151 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~~~~~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~~ 151 (945)
.+||||||||||+||+++++.++++.+.+|++.+||+|+|.+ +++++|..|..+...+|.++++++|+|||++++++.+
T Consensus 2 ~vvGIDfGTt~s~va~~~~g~~~ii~~~~~~r~~Ps~i~~~~-~~~~vG~~a~~~~~~~p~~~i~~~KrllG~~~~~~~~ 80 (185)
T d1bupa1 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFDDAVV 80 (185)
T ss_dssp CCEEEEECSSEEEEEEEETTEEEECCCTTSCSSEECCEEECS-SCEEETHHHHTTTTTCGGGEECCHHHHTTCCTTCHHH
T ss_pred CEEEEEcChhcEEEEEEECCEEEEEECCCCCccceeEEEECC-CcEEEeechHHHhhcCcccchhHHHHHhCCCCccHHH
Confidence 379999999999999999999999999999999999999985 4789999999999999999999999999999999999
Q ss_pred HhhhcCCCeeEEecCCCc-eEEEECC--eeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHH
Q psy2902 152 QKDISLMPYKIVKADNGD-AWISVRG--KKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGR 228 (945)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~ 228 (945)
+.....+++.++...... ..+...+ ..++|+++++++|++|++.++.+++..+.++|||||++|++.||++|++||+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~el~a~~l~~l~~~a~~~~~~~~~~~VitvPa~f~~~qr~~~~~Aa~ 160 (185)
T d1bupa1 81 QSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGT 160 (185)
T ss_dssp HHHHTTCSSEEEEETTEEEEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHTSCCCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHhhcCCceEEcCCCCccEEEEEcCCceEEcHHHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCHHHHHHHHHHHH
Confidence 999999999888654322 2222333 5789999999999999999999999999999999999999999999999999
Q ss_pred HcCCccceecchhHHHHHHhccCC
Q psy2902 229 IAGLEVKRIINEPTAAALAFGLDK 252 (945)
Q Consensus 229 ~AGl~~v~li~Ep~AAAl~~~~~~ 252 (945)
.|||+++.+++||+|||++|++++
T Consensus 161 ~AGl~~~~li~EP~AAAl~Ygldk 184 (185)
T d1bupa1 161 IAGLNVLRIINEPTAAAIAYGLDK 184 (185)
T ss_dssp HTTCEEEEEEEHHHHHHHHTTTTS
T ss_pred HcCCCeEEEEcCHHHHHHHhcccC
Confidence 999999999999999999998865
|
| >d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.96 E-value=1.9e-29 Score=239.09 Aligned_cols=158 Identities=62% Similarity=0.932 Sum_probs=152.0
Q ss_pred cCCCCceEEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCC
Q psy2902 453 SGDRKDLLLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGI 532 (945)
Q Consensus 453 ~~~~~~~~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~ 532 (945)
++.++++++.|++|+|+||++.+|.|.++||||++||+++++.|++..|+|+.+.|.||||++..+.+|.+||+|.|+++
T Consensus 1 ~~~v~~~~l~DV~p~slGie~~gg~~~~iI~rnt~iP~~~~~~f~T~~d~Q~~v~i~i~qGe~~~~~~n~~lg~f~l~~i 80 (159)
T d1yuwa1 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGI 80 (159)
T ss_dssp CCCTTSSCCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEECC
T ss_pred CCccceEEEEEecCCceEEEEcCCEEEEEEcCCcccceeeeEEEeeccCCCcEEEEEEEcCchhhccCccEEEEEEECCC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCeEEEEEEECCCccEEEEEeecCCCceeEEEeccCC-CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCc
Q psy2902 533 PPALRGIPQIEVTFDIDANGILHVTAKDKKTGKENKITIKANS-GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGE 610 (945)
Q Consensus 533 ~~~~~~~~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~-~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e 610 (945)
|+.|+|.++|+|+|++|.||+|+|+|.+..||+...++|.... .||++||+++++++++++.+|+..+++.+++|.+|
T Consensus 81 p~~~~G~~~I~Vtf~id~nGil~V~A~d~~Tg~~~~i~I~~~~~~Ls~eEIek~i~eae~~~~eDe~~r~~ieakn~lE 159 (159)
T d1yuwa1 81 PPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159 (159)
T ss_dssp CCCSTTCCCEEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSSCSCHHHHHHHHHHHHHTTTHHHHHTTSSCSCEECS
T ss_pred CcCCCCCceEEEEEEEcCCCeEEEEEEEcCCCCeEEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999865 59999999999999999999999999999999876
|
| >d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=6.1e-23 Score=183.53 Aligned_cols=116 Identities=77% Similarity=1.101 Sum_probs=112.1
Q ss_pred EEEeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCc
Q psy2902 460 LLLDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGI 539 (945)
Q Consensus 460 ~~~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~ 539 (945)
++.|++|+++||++.+|.|.++|+||++||+++++.|++..|||+.+.|.||||++..+.+|..||++.|+++|+.|+|.
T Consensus 2 ~l~DV~p~slGIe~~~g~~~~iI~rnt~iP~~~t~~f~T~~dnQ~~i~i~v~qGe~~~~~~n~~lg~~~i~~ip~~p~G~ 81 (118)
T d1dkza2 2 LLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRAADNKSLGQFNLDGINPAPRGM 81 (118)
T ss_dssp CCCCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEEESSTTCCEEEEEEEESSCSBGGGSEEEEEEEEECCCSCCTTC
T ss_pred EEEeecCCceeEEEcCCEEEEEEeccccCCCcceEEEEcccCCCceEEEEEeeeeeccccCceEEEEEEEcCCccCCCCC
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEEEECCCccEEEEEeecCCCceeEEEeccCC
Q psy2902 540 PQIEVTFDIDANGILHVTAKDKKTGKENKITIKANS 575 (945)
Q Consensus 540 ~~i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~ 575 (945)
++|+|+|++|.||+|+|+|.|..+|++.+++|+...
T Consensus 82 ~~I~Vtf~iD~nGiL~V~a~d~~tg~~~~~~i~~~~ 117 (118)
T d1dkza2 82 PQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASS 117 (118)
T ss_dssp SCEEEEEEECTTCCEEEEEEETTTCCEEEEEECTTC
T ss_pred cEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEcCC
Confidence 999999999999999999999999999999988654
|
| >d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Heat shock protein 70kD (HSP70), peptide-binding domain superfamily: Heat shock protein 70kD (HSP70), peptide-binding domain family: Heat shock protein 70kD (HSP70), peptide-binding domain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2.4e-22 Score=178.94 Aligned_cols=115 Identities=50% Similarity=0.779 Sum_probs=111.2
Q ss_pred EeeccceeeEEEeCCEEEEEEecCCCccceeEEEeeecCCCCceEEEEEEecCcccccCCceEEEEEEcCCCCCCCCcCe
Q psy2902 462 LDVTPLSLGIETMGGIMTKMIKKNTTIPTKFSQVFSTAEDNQPAVTVKVYQGEREMVSGNKILGEFNLEGIPPALRGIPQ 541 (945)
Q Consensus 462 ~~~~~~s~gi~~~~~~~~~li~~~~~iP~~~~~~~~~~~d~q~~~~i~iy~g~~~~~~~~~~lg~~~i~~~~~~~~~~~~ 541 (945)
.|++|+|+||++.+|.|.+||+||++||+++++.|++..|+|+.+.|.||||++..+.+|..||++.|.++|+.|+|.++
T Consensus 1 lDV~p~slGIe~~gg~~~~iI~rnt~iP~~~t~~f~T~~d~Q~~v~i~V~qGe~~~~~~N~~lg~~~l~~ip~~p~G~~~ 80 (115)
T d1u00a2 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRSLARFALRGIPALPAGGAH 80 (115)
T ss_dssp CCBCSSCEEEEETTTEEEEEECTTCBSSEEEEEEEECSSTTCCCEEEEEEECSSSBGGGSEEEEEEEECCCCCCSTTCSC
T ss_pred CCccCcceeEEEcCCEEEEEEcCCCCCCceeeeeEEcCCCCceEEEEEEhhccCcccccceEeeEEEEeCcccCcccccc
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEECCCccEEEEEeecCCCceeEEEeccCCC
Q psy2902 542 IEVTFDIDANGILHVTAKDKKTGKENKITIKANSG 576 (945)
Q Consensus 542 i~v~~~~d~~g~l~v~a~~~~~g~~~~~~i~~~~~ 576 (945)
|+|+|++|.||+|+|+|.|..+|++.+++|+.+++
T Consensus 81 I~Vtf~id~nGiL~V~A~d~~tg~~~~i~i~~~~g 115 (115)
T d1u00a2 81 IRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115 (115)
T ss_dssp EEEEEEECTTCCEEEEEEETTTCCEEEEEECCCSC
T ss_pred EEEEEEccCCceEEEEEEECCCCCEeEEEEeCCCC
Confidence 99999999999999999999999999999987653
|
| >d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Heat shock protein 40 Sis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=1.7e-21 Score=166.61 Aligned_cols=88 Identities=28% Similarity=0.520 Sum_probs=82.0
Q ss_pred cccccCCCceeEEeeCHHHHhcCCeEEEecCCCeE-EEEeCCCCCCCcEEEECCCCcCCCCC-CCCccEEEEEEEECCCC
Q psy2902 830 VFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKA-FFVIPEGTQSGKIFRLRGKGIKNIRS-SIPGDLFCHVTIETPVQ 907 (945)
Q Consensus 830 ~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~-~~~i~~~~~~g~~~~i~g~G~~~~~~-~~~Gdl~v~~~i~~p~~ 907 (945)
.|+|+|+||+++++|++.||++|++++|+|+||+. .+.+|+++++|++++|+|+|||..+. +.+|||||+|+|.+|+.
T Consensus 1 ~F~R~G~DL~~~~~I~~~eal~G~~~~i~~~dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ 80 (90)
T d1c3ga2 1 NFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPIS 80 (90)
T ss_dssp SEEEETTEEEEEECCBHHHHHHCEEEEEECSSSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSS
T ss_pred CCeEeCCeEEEEEEeCHHHHhcCCeEEEecccccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCC
Confidence 48999999999999999999999999999999965 68899999999999999999998644 57899999999999999
Q ss_pred CCHHHHHHHH
Q psy2902 908 LTEYQKKLLR 917 (945)
Q Consensus 908 l~~~~~~~~~ 917 (945)
||++|+++|+
T Consensus 81 ls~~qk~~lE 90 (90)
T d1c3ga2 81 LNDAQKRAID 90 (90)
T ss_dssp CCTTHHHHTC
T ss_pred CCHHHHHhhC
Confidence 9999999874
|
| >d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.78 E-value=2.5e-19 Score=168.09 Aligned_cols=133 Identities=35% Similarity=0.384 Sum_probs=100.3
Q ss_pred eEEEEcCccceEEEEEeCCceEEEeCCCCCcCccEEEEEee-CCc-EEecHHHHHhhhhCCCchhHHHHHhhCCCCCcHH
Q psy2902 73 IIGIDLGTTNSCVSIIEGSQPKVIENSEGARTTPSVIAYQE-NGE-ILVGAPAKRQAVTNPKNTIYAAKRLIGRKFNEKE 150 (945)
Q Consensus 73 viGID~GTt~s~va~~~~~~~~ii~~~~g~~~~Ps~v~~~~-~~~-~~~G~~A~~~~~~~~~~~i~~~k~llg~~~~~~~ 150 (945)
.||||||||||+|++...+ .++. .|+.+++.. .+. ..+|..+......++.+..
T Consensus 2 ~iGIDlGTtns~va~~~~~--~v~~-------~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~--------------- 57 (137)
T d1jcea1 2 DIGIDLGTANTLVFLRGKG--IVVN-------EPSVIAIDSTTGEILKVGLEAKNMIGKTPATIK--------------- 57 (137)
T ss_dssp EEEEEECSSEEEEEETTTE--EEEE-------EESCEEEETTTCCEEEESHHHHTTTTCCCTTEE---------------
T ss_pred eEEEEcChhhEEEEEeCCC--EEee-------cCCcceEecCCCeEEEEehHHhhhhhhccccce---------------
Confidence 5999999999999875333 3332 255555543 233 4466666544433332221
Q ss_pred HHhhhcCCCeeEEecCCCceEEEECCeeeChhhHHHHHHHHHHHHHHHHhCCCCCcEEEEcCCCCCHHHHHHHHHHHHHc
Q psy2902 151 VQKDISLMPYKIVKADNGDAWISVRGKKLAPPQISAEVLRKMKKTAEDYLGGEITEAVITVPAYFNDAQRQATKDAGRIA 230 (945)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ev~a~~L~~l~~~a~~~~~~~~~~~VitVPa~~~~~qr~~l~~Aa~~A 230 (945)
......+..+.+.++.++++.+++..++...+..+.++|||||++|++.||+++++||+.|
T Consensus 58 -------------------~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VItVPa~f~~~qR~at~~Aa~~A 118 (137)
T d1jcea1 58 -------------------AIRPMRDGVIADYTVALVMLRYFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEA 118 (137)
T ss_dssp -------------------EECCEETTEESSHHHHHHHHHHHHHHHHTSCCSCCCEEEEEECTTCCHHHHHHHHHHHHHT
T ss_pred -------------------eEEeccCCccCcHHHHHHHHHHHHHHHHhhcCccccceEEEeecccCHHHHHHHHHHHHHc
Confidence 1112234556888999999999999999999999999999999999999999999999999
Q ss_pred CCccceecchhHHHHHHh
Q psy2902 231 GLEVKRIINEPTAAALAF 248 (945)
Q Consensus 231 Gl~~v~li~Ep~AAAl~~ 248 (945)
||++++|++||+|||+++
T Consensus 119 Gl~vv~li~EPtAAAiGa 136 (137)
T d1jcea1 119 GASKVFLIEEPMAAAIGS 136 (137)
T ss_dssp TCSEEEEEEHHHHHHHHT
T ss_pred CCCEEEEeCCHHHHHhCC
Confidence 999999999999999975
|
| >d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Prokaryotic actin homolog MreB species: Thermotoga maritima [TaxId: 2336]
Probab=99.72 E-value=3.2e-18 Score=171.56 Aligned_cols=179 Identities=18% Similarity=0.282 Sum_probs=124.3
Q ss_pred CCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHH
Q psy2902 255 KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKA 334 (945)
Q Consensus 255 ~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 334 (945)
.++..+||||+||||||+|++.. ....+ .+....||.+++..+..++...+..... .........
T Consensus 4 ~~~~gvlV~DiGGGT~Dvsi~~~----g~~~~-----~~~~~~gg~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 68 (196)
T d1jcea2 4 EEPSGNMVVDIGGGTTEVAVISL----GSIVT-----WESIRIAGDEMDEAIVQYVRETYRVAIG------ERTAERVKI 68 (196)
T ss_dssp TSSSCEEEEEECSSCEEEEEEET----TEEEE-----EEEESCSHHHHHHHHHHHHHHHHCEECC------HHHHHHHHH
T ss_pred CCCCceEEEEcCCCcEEEEEEEc----CCEeE-----EeeecCCCcccccchhhhhhhhhccccc------chhHHHHHH
Confidence 46788999999999999999986 22222 2334569999999999998887653221 111111111
Q ss_pred HHHHHHHHh-cCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCcEEEe
Q psy2902 335 SAERAKIEL-SSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVS---DINDIILV 410 (945)
Q Consensus 335 ~~e~~K~~L-s~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~---~i~~ViLv 410 (945)
....+.... .......+..+.. .........+++.++++++.+++.++...+.++++.+..... .++.|+||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~IvLv 144 (196)
T d1jcea2 69 EIGNVFPSKENDELETTVSGIDL----STGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLT 144 (196)
T ss_dssp HHCBCSCCHHHHHCEEEEEEEET----TTTEEEEEEEEHHHHHHHTHHHHHHHHHHHHHHHHTSCHHHHHHHHHHCEEEE
T ss_pred HHhhhhhhhhccccceeeeeeec----cCCCccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccceEEe
Confidence 110000000 0001111221111 112366788999999999999999999999999987655422 24679999
Q ss_pred cCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 411 GGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 411 GG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
||+|++|.+++++++.||.++....||++|||+|||+++..+
T Consensus 145 GGsS~ip~v~~~l~~~fg~~v~~~~~P~~aVA~GAai~~~~~ 186 (196)
T d1jcea2 145 GGGSLLRGLDTLLQKETGISVIRSEEPLTAVAKGAGMVLDKV 186 (196)
T ss_dssp SGGGCSBTHHHHHHHHHSSCEEECSSTTTHHHHHHHHGGGCH
T ss_pred CchhcchhHHHHHHHHHCcCCccCCChHHHHHHHHHHHHHCH
Confidence 999999999999999999999989999999999999987544
|
| >d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.72 E-value=3.1e-18 Score=142.88 Aligned_cols=77 Identities=35% Similarity=0.475 Sum_probs=71.3
Q ss_pred cccccCCCceeEEeeCHHHHhcCCeEEEecCCCeE-EEEeCCC--CCCCcEEEECCCCcCCCCCCCCccEEEEEEEECCC
Q psy2902 830 VFERDGDDLHYEMPISFSTAALGGEIEAPTLNGKA-FFVIPEG--TQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETPV 906 (945)
Q Consensus 830 ~~~r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~-~~~i~~~--~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p~ 906 (945)
+|+|+|+||+++++|++.||++|++++|+|+||+. .+.||++ +++|+++||+|+|||..+++.+|||||+|+|.+|+
T Consensus 1 tF~R~G~dL~~~~~I~~~eal~G~~~~i~~~dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~Pk 80 (80)
T d1nlta2 1 SFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE 80 (80)
T ss_dssp SCEEETTEEEEEEEEEHHHHHHCBCCEEECSSSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC
T ss_pred CcEEeCCEEEEEEEeCHHHHhCCCEEEEEecCcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcCC
Confidence 58999999999999999999999999999999965 4667766 89999999999999998778899999999999996
|
| >d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: DnaJ/Hsp40 cysteine-rich domain superfamily: DnaJ/Hsp40 cysteine-rich domain family: DnaJ/Hsp40 cysteine-rich domain domain: Cysteine-rich domain of the chaperone protein DnaJ species: Escherichia coli [TaxId: 562]
Probab=99.40 E-value=1e-13 Score=114.16 Aligned_cols=78 Identities=54% Similarity=1.167 Sum_probs=71.3
Q ss_pred ceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEeecCCcccCCCceEee
Q psy2902 706 GFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRIKR 783 (945)
Q Consensus 706 g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~~~ 783 (945)
|.++.+.+.+...|+.|+|+|........+|+.|+|+|++.+..|+++++.+|+.|+|.|++++++|..|+|.|.+.+
T Consensus 1 G~~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~i~~~C~~C~G~G~v~k 78 (79)
T d1exka_ 1 GVTKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVER 78 (79)
T ss_dssp CTTTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEECSSBCGGGTTSSEEEC
T ss_pred CceEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeECCCCCCCCCCceEeec
Confidence 456677888999999999999998888889999999999999999999999999999999999999999999997654
|
| >d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Heat shock protein 40 Sis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.35 E-value=4e-13 Score=111.30 Aligned_cols=80 Identities=20% Similarity=0.341 Sum_probs=66.7
Q ss_pred ccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEee
Q psy2902 690 KDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVIP 769 (945)
Q Consensus 690 ~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~~ 769 (945)
.+++++|.++|+++|.|+++.+.+.|. . |.|.+
T Consensus 1 e~v~~~l~vtLee~~~G~~k~i~~~r~---------------------~----------------------~~g~~---- 33 (80)
T d1c3ga1 1 ETVQVNLPVSLEDLFVGKKKSFKIGRK---------------------G----------------------PHGAS---- 33 (80)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEE---------------------E----------------------TTTEE----
T ss_pred CCEEEEeEEEHHHHhCCCceEeeccee---------------------c----------------------ccCCC----
Confidence 368899999999999999998876431 1 22211
Q ss_pred cCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCC
Q psy2902 770 HPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHK 829 (945)
Q Consensus 770 ~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~ 829 (945)
+.++++|+||||+++|++|+|+|+|++.++++.+|||+|+|++++||
T Consensus 34 -------------~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~HP 80 (80)
T d1c3ga1 34 -------------EKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSHP 80 (80)
T ss_dssp -------------EEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCCS
T ss_pred -------------ceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCCC
Confidence 34579999999999999999999999988777899999999999997
|
| >d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Plasmid segregation protein ParM species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=4.3e-13 Score=129.20 Aligned_cols=156 Identities=17% Similarity=0.180 Sum_probs=99.6
Q ss_pred CCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHH
Q psy2902 255 KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKA 334 (945)
Q Consensus 255 ~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 334 (945)
...+++||+|+||||||+++++- +...+....++..+||.++++.+++++...+... .......+
T Consensus 4 ~e~~~ilViDiGggTtDi~v~~~------~~~~~~~~~~~~~~G~~~i~~~i~~~l~~~~~~~-------~~~~~~~~-- 68 (163)
T d2zgya2 4 DELDSLLIIDLGGTTLDISQVMG------KLSGISKIYGDSSLGVSLVTSAVKDALSLARTKG-------SSYLADDI-- 68 (163)
T ss_dssp CTTCEEEEEEECSSCEEEEEEEG------GGCCEEEEEEECSCCTHHHHHHHHHHTTCCSBGG-------GHHHHHHH--
T ss_pred CCCCCEEEEECCCCcEEEEEEcC------CeEEEEEeeccccccchHHHHHHHHhhHHhhchh-------hhhhHHHH--
Confidence 45678999999999999999862 2334445556678899999999988765433211 00000000
Q ss_pred HHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCcc
Q psy2902 335 SAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMT 414 (945)
Q Consensus 335 ~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 414 (945)
++ .......... .......++.+++++.+.+..+.+.+.+.+. ...+++.|+|+||+|
T Consensus 69 ----~~---~~~~~~~~~~-----------~~~~~~~~~~i~~~i~~~~~~i~~~i~~~~~----~~~~~~~iil~GGGs 126 (163)
T d2zgya2 69 ----II---HRKDNNYLKQ-----------RINDENKISIVTEAMNEALRKLEQRVLNTLN----EFSGYTHVMVIGGGA 126 (163)
T ss_dssp ----HH---TTTCHHHHHH-----------HSSSSCTHHHHHHHHHHHHHHHHHHHHHHHT----TCCCCCEEEEESTTH
T ss_pred ----HH---hhcccccccc-----------cchHHHHHHHHHHHHHHHHHHHHHHHHHhhc----cccccceEEEECchH
Confidence 00 0000000000 0011224556666666666666655555543 345689999999999
Q ss_pred ccHHHHHHHHHHhCCC---CCCCCCCCchhhhhHHHhh
Q psy2902 415 RMPKVQEKVKEFFGKD---PRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 415 ~~p~v~~~l~~~fg~~---~~~~~~p~~avA~GAa~~a 449 (945)
+ .+++.+++.|+.+ +....||..|+|+|+.++|
T Consensus 127 ~--ll~~~lk~~~~~~~~~v~i~~~P~~A~a~G~~~~g 162 (163)
T d2zgya2 127 E--LICDAVKKHTQIRDERFFKTNNSQYDLVNGMYLIG 162 (163)
T ss_dssp H--HHHHHHHHTSCCCGGGEECCSCGGGHHHHHHHHHH
T ss_pred H--HHHHHHHHHhCCCCCCeEECCCcHhHHHHHHHHhc
Confidence 5 5999999999753 4578899999999999886
|
| >d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=99.28 E-value=8.4e-12 Score=122.85 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=110.5
Q ss_pred CceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH
Q psy2902 257 DRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASA 336 (945)
Q Consensus 257 ~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~ 336 (945)
+..++|+|+|++||+++++.- +.+.... ...+||++||+.|+..+. .+ .++|
T Consensus 6 ~~Gv~vvDiG~~tt~i~i~~~------G~l~~~~---~i~~GG~~iT~~Ia~~l~--------i~-----------~~~A 57 (191)
T d1e4ft2 6 DRGVVVVNLGYNFTGLIAYKN------GVPIKIS---YVPVGMKHVIKDVSAVLD--------TS-----------FEES 57 (191)
T ss_dssp HHCEEEEEECSSCEEEEEEET------TEEEEEE---EESCCHHHHHHHHHHHHT--------CC-----------HHHH
T ss_pred hCCEEEEEeCCCcEEEEEEEC------CeEEEEE---EEeeChHHHHHHHHHHhc--------cc-----------HHHH
Confidence 345899999999999999863 3232221 135799999999986542 11 5689
Q ss_pred HHHHHHhcCCcce---eeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCC------CCCCCcE
Q psy2902 337 ERAKIELSSSKQT---EINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIK------VSDINDI 407 (945)
Q Consensus 337 e~~K~~Ls~~~~~---~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~------~~~i~~V 407 (945)
|++|+.+...... ...++....+. .....+++..+.+++++.++++...+.+.++..... ...+..|
T Consensus 58 E~iK~~~g~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~l~~ii~~~~~ei~~~i~~~~~~~~~~~~~~~~~~~~~~I 133 (191)
T d1e4ft2 58 ERLIITHGNAVYNDLKEEEIQYRGLDG----NTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGV 133 (191)
T ss_dssp HHHHHHHCCSCCTTCCCCEEEEECTTS----SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------CGGGCE
T ss_pred HHHHhhccccccccccchhcccccccC----CCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhhcccccCceE
Confidence 9999987643221 11222221111 334578899999999999999998888887653211 1124569
Q ss_pred EEecCccccHHHHHHHHHHhCCCCCC-----------------CCCCCchhhhhHHH
Q psy2902 408 ILVGGMTRMPKVQEKVKEFFGKDPRR-----------------DINPDEAVAVGAAI 447 (945)
Q Consensus 408 iLvGG~s~~p~v~~~l~~~fg~~~~~-----------------~~~p~~avA~GAa~ 447 (945)
+|+||+|++|.+.+.+++.|+.++.. ..+|..++|.|++|
T Consensus 134 vLtGGgs~l~gl~~~l~~~l~~~Vri~~~~~~~~~~~~~~~~~~~~P~~ata~Gl~l 190 (191)
T d1e4ft2 134 VLTGGGAKIPRINELATEVFKSPVRTGCYANSDRPSIINADEVANDPSFAAAFGNVF 190 (191)
T ss_dssp EEESGGGGSTTHHHHHHHHHCSCEEECCGGGSSSCCEETCHHHHTCGGGHHHHHHHT
T ss_pred EEecchhhhhhHHHHHHHHHCCCeEEeCCccccccccCCcHHhhcCcHHHHHHHHHh
Confidence 99999999999999999999876521 12577888888875
|
| >d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=7.9e-12 Score=101.35 Aligned_cols=73 Identities=25% Similarity=0.458 Sum_probs=64.4
Q ss_pred CCCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceE
Q psy2902 687 SNGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGK 766 (945)
Q Consensus 687 ~~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~ 766 (945)
+++.|++++|.++|++++.|+++.+.+.
T Consensus 2 rkg~di~~~l~isleea~~G~~~~~~~~---------------------------------------------------- 29 (74)
T d1nlta1 2 QRGKDIKHEISASLEELYKGRTAKLALN---------------------------------------------------- 29 (74)
T ss_dssp CBCCCEEEEEEECTTHHHHCEEEEEEEE----------------------------------------------------
T ss_pred CCCCCEEEEEEecHHHHHhhcccceeec----------------------------------------------------
Confidence 4678999999999999999998887532
Q ss_pred EeecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCC
Q psy2902 767 VIPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHK 829 (945)
Q Consensus 767 ~~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~ 829 (945)
.++++|+||+|+++|++|+|+|+|++.++ +.+|||+|+|++++|.
T Consensus 30 -----------------~~~~~i~Ip~G~~~G~~ir~~g~G~~~~~-~~~GDl~v~i~~~pHk 74 (74)
T d1nlta1 30 -----------------RKILEVHVEPGMKDGQRIVFKGEADQAPD-VIPGDVVFIVSERPHK 74 (74)
T ss_dssp -----------------EEEEEEEECTTCCTTCEEEETTCSCCCTT-CBCCCEEEEEEECCCS
T ss_pred -----------------CccEEEEecccccCCeEEEecCCcCCCCC-CCCCCEEEEEEecCCC
Confidence 24789999999999999999999999764 6789999999999995
|
| >d1nlta1 b.4.1.1 (A:110-138,A:213-257) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=1.2e-11 Score=100.34 Aligned_cols=72 Identities=18% Similarity=0.256 Sum_probs=65.6
Q ss_pred ccCCCceeEEeeCHHHHhcCCeEEEecCCCeEEEEeCCCCCCCcEEEECCCCcCCCCCCCCccEEEEEEEECC
Q psy2902 833 RDGDDLHYEMPISFSTAALGGEIEAPTLNGKAFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETP 905 (945)
Q Consensus 833 r~g~dl~~~~~i~l~eal~G~~~~v~~l~g~~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p 905 (945)
|+|.|++++++|||.||+.|+++.|.+..+...+.||+|+++|+++|++|+|.+.+ ++.+|||+|++++..+
T Consensus 2 rkg~di~~~l~isleea~~G~~~~~~~~~~~~~i~Ip~G~~~G~~ir~~g~G~~~~-~~~~GDl~v~i~~~pH 73 (74)
T d1nlta1 2 QRGKDIKHEISASLEELYKGRTAKLALNRKILEVHVEPGMKDGQRIVFKGEADQAP-DVIPGDVVFIVSERPH 73 (74)
T ss_dssp CBCCCEEEEEEECTTHHHHCEEEEEEEEEEEEEEEECTTCCTTCEEEETTCSCCCT-TCBCCCEEEEEEECCC
T ss_pred CCCCCEEEEEEecHHHHHhhcccceeecCccEEEEecccccCCeEEEecCCcCCCC-CCCCCCEEEEEEecCC
Confidence 67899999999999999999999999877788899999999999999999999875 4568999999998743
|
| >d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.02 E-value=2.8e-10 Score=108.73 Aligned_cols=154 Identities=19% Similarity=0.159 Sum_probs=99.7
Q ss_pred CCCceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHH
Q psy2902 255 KSDRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKA 334 (945)
Q Consensus 255 ~~~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~ 334 (945)
+++.++||+|+||||||++++.. .+..+ +...+.....|+.+++..+.+++..++.. ... ..
T Consensus 3 ~~~g~~lviDIG~gTtDi~v~~~----~~~~~-~~~~~~~~~~g~~~i~~~i~~~i~~~~~~----~~~---------~~ 64 (161)
T d2fsja1 3 QQPGYGVVIDVGSRTTDVLTINL----MDMEP-VVELSFSLQIGVGDAISALSRKIAKETGF----VVP---------FD 64 (161)
T ss_dssp CCSSEEEEEEECSSCEEEEEEET----TTTEE-CGGGCEEESCCHHHHHHHHHHHHHHHHCC----CCC---------HH
T ss_pred cCCCcEEEEEcCcCeEEEEEEEC----CCeEE-EEEEeccHhHHHHHHHHHHHHHHHHHHHh----hhh---------HH
Confidence 45678999999999999999974 22222 22223345669999999998888776642 211 11
Q ss_pred HHHHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCcc
Q psy2902 335 SAERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMT 414 (945)
Q Consensus 335 ~~e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s 414 (945)
..+.+ .... .... . ...-.++.+.++++++++.+...+...+... ...++.|+|+||+|
T Consensus 65 ~~~~~----~~~~---~~~~----------g-~~~~~~~~i~~~~~~~~~~i~~~i~~~~~~~---~~~i~~iil~GGga 123 (161)
T d2fsja1 65 LAQEA----LSHP---VMFR----------Q-KQVGGPEVSGPILEDLANRIIENIRLNLRGE---VDRVTSLIPVGGGS 123 (161)
T ss_dssp HHHHH----TTSC---EEET----------T-EEECSHHHHHHHHHHHHHHHHHHHHHHHGGG---GGGEEEEEEESTTH
T ss_pred HHHHH----Hhcc---cccc----------c-ccchHHHHHHHHHHHHHHHHHHHHHHHHhhc---cccccEEEEECCHH
Confidence 11111 1111 1110 0 1111245677777777777777776666532 34589999999999
Q ss_pred ccHHHHHHHHHHhCCCC--CCCCCCCchhhhhHHHhh
Q psy2902 415 RMPKVQEKVKEFFGKDP--RRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 415 ~~p~v~~~l~~~fg~~~--~~~~~p~~avA~GAa~~a 449 (945)
.+ +++.+++.|+... ..+.||..|.|.|.-..|
T Consensus 124 ~l--l~~~l~~~~~~~~~~~~~~~p~~ana~G~~~~~ 158 (161)
T d2fsja1 124 NL--IGDRFEEIAPGTLVKIKPEDLQFANALGYRDAA 158 (161)
T ss_dssp HH--HGGGGGGGSTTCBCCCCTTTTTTHHHHHHHHHH
T ss_pred HH--HHHHHHHHccCCeeecCCCCccchHHHHHHHHH
Confidence 87 7888999997544 345799999999987665
|
| >d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: DnaJ/Hsp40 cysteine-rich domain superfamily: DnaJ/Hsp40 cysteine-rich domain family: DnaJ/Hsp40 cysteine-rich domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.95 E-value=3.3e-10 Score=91.37 Aligned_cols=67 Identities=34% Similarity=0.711 Sum_probs=54.2
Q ss_pred cccCCCCCccccccCcCcccCCCCCCCceEeEe----eceeeeeecCCCCCCceEEee--cCCcccCCCceEee
Q psy2902 716 WDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQ----QGFFSIQQTCPKCQGAGKVIP--HPCLDCNGIGRIKR 783 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~----~~~~~~~~~C~~C~G~g~~~~--~~c~~c~G~g~~~~ 783 (945)
.+.|+.|+|+|..... ..+|+.|+|+|.+... .+++++..+|+.|+|+|++++ ++|..|+|.|.+.+
T Consensus 2 ~v~C~~C~G~G~~~~~-~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~i~~~~~C~~C~G~g~v~E 74 (74)
T d1nlta3 2 QILCKECEGRGGKKGA-VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDIIDPKDRCKSCNGKKVENE 74 (74)
T ss_dssp EEECTTTTTCSBSTTT-CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSCCCTTSBCSSSTTSCEEEE
T ss_pred ccCCcCCcccccCCCC-CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEEeCCCCCCCCCCCeeEeCC
Confidence 4689999999998765 5689999999987432 234567889999999998864 68999999997653
|
| >d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Heat shock protein 40 Sis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.84 E-value=7.6e-10 Score=93.33 Aligned_cols=83 Identities=19% Similarity=0.366 Sum_probs=70.5
Q ss_pred CCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 688 NGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 688 ~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
.|.|+.+++++++.++.+|+++.+.-.
T Consensus 5 ~G~DL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------- 31 (90)
T d1c3ga2 5 DGDDLIYTLPLSFKESLLGFSKTIQTI----------------------------------------------------- 31 (90)
T ss_dssp ETTEEEEEECCBHHHHHHCEEEEEECS-----------------------------------------------------
T ss_pred eCCeEEEEEEeCHHHHhcCCeEEEecc-----------------------------------------------------
Confidence 568999999999999999999887521
Q ss_pred eecCCcccCCCceEeeeeeEEEEeecCCCCCeEEEEcCCCCCCCC-CCCCccEEEEEEEecCCcccccCCCc
Q psy2902 768 IPHPCLDCNGIGRIKRNKTLEVKIPAGIENNMRIRSTGNGEPGLN-GGSNGNLYIEIHIKPHKVFERDGDDL 838 (945)
Q Consensus 768 ~~~~c~~c~G~g~~~~~~~l~v~ip~G~~~g~~i~~~g~G~~~~~-~~~~Gdl~i~i~v~~~~~~~r~g~dl 838 (945)
..+++.|++|+|+++|++++++|+|+|... ++.+|||||+|+|..|..++.++.++
T Consensus 32 ---------------dG~~i~i~ip~~~~~g~~~~i~g~G~p~~~~~~~rGdL~V~~~v~~P~~ls~~qk~~ 88 (90)
T d1c3ga2 32 ---------------DGRTLPLSRVQPVQPSQTSTYPGQGMPTPKNPSQRGNLIVKYKVDYPISLNDAQKRA 88 (90)
T ss_dssp ---------------SSCEEEEEESSCCCTTCEEECTTCSCBCSSCTTSBCCEEEEECCBCCSSCCTTHHHH
T ss_pred ---------------cccceecccccccccccccccCCCCCCcCCCCCCcCCEEEEEEEEcCCCCCHHHHHh
Confidence 124789999999999999999999999764 45689999999999999888776543
|
| >d1nlta2 b.4.1.1 (A:258-337) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=1.1e-08 Score=84.05 Aligned_cols=74 Identities=35% Similarity=0.425 Sum_probs=62.9
Q ss_pred CCccceeeccccccccccceeeEeeccccccCCCCCccccccCcCcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 688 NGKDLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGTSPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 688 ~g~~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
.|.|+.+++++++.++.+|++..+...
T Consensus 5 ~G~dL~~~~~I~~~eal~G~~~~i~~~----------------------------------------------------- 31 (80)
T d1nlta2 5 DGDDLVYEAEIDLLTAIAGGEFALEHV----------------------------------------------------- 31 (80)
T ss_dssp ETTEEEEEEEEEHHHHHHCBCCEEECS-----------------------------------------------------
T ss_pred eCCEEEEEEEeCHHHHhCCCEEEEEec-----------------------------------------------------
Confidence 478999999999999999998887532
Q ss_pred eecCCcccCCCceEeeeeeEEEEeecC--CCCCeEEEEcCCCCCCCCCCCCccEEEEEEEecCC
Q psy2902 768 IPHPCLDCNGIGRIKRNKTLEVKIPAG--IENNMRIRSTGNGEPGLNGGSNGNLYIEIHIKPHK 829 (945)
Q Consensus 768 ~~~~c~~c~G~g~~~~~~~l~v~ip~G--~~~g~~i~~~g~G~~~~~~~~~Gdl~i~i~v~~~~ 829 (945)
....++++||++ +++|++++++|+|+|..+++.+|||||+|+|+.|+
T Consensus 32 ---------------dg~~~~i~i~~~~~~~~g~~~~i~g~G~p~~~~~~~GDL~v~~~V~~Pk 80 (80)
T d1nlta2 32 ---------------SGDWLKVGIVPGEVIAPGMRKVIEGKGMPIPKYGGYGNLIIKFTIKDPE 80 (80)
T ss_dssp ---------------SSCEEECCBCTTTTCSTTCEEEETTCSCBCSSSCSBCCEEEEEEEECCC
T ss_pred ---------------CcceEEEEeCCCCCcCCCCEEEecCCCCCCCCcCCcCcEEEEEEEEcCC
Confidence 123577788877 99999999999999988877899999999998774
|
| >d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Hydroxyglutaryl-CoA dehydratase component A species: Acidaminococcus fermentans [TaxId: 905]
Probab=98.62 E-value=8.2e-07 Score=90.90 Aligned_cols=72 Identities=14% Similarity=0.149 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhc
Q psy2902 377 LLVDELITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVL 452 (945)
Q Consensus 377 ~~~~~~i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~ 452 (945)
+++...+..+...+...+... .+.+.|++.||.++++.+++.+++.++.++..+.+|.++.|+|||++|...
T Consensus 185 ~i~~~~~~~~~~~~~~~~~~~----~~~~~Iv~gGGv~~~~~~~~~l~~~l~~~i~~~~~~~~agaiGAA~lA~~~ 256 (259)
T d1huxa_ 185 DIIAGIHRSVASRVIGLANRV----GIVKDVVMTGGVAQNYGVRGALEEGLGVEIKTSPLAQYNGALGAALYAYKK 256 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT----CCCSSEEEESGGGGCHHHHHHHHHHHCSCEECCGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc----cCCCcEEEEccccccHHHHHHHHHHHCCCEEcCCCccHHHHHHHHHHHHHH
Confidence 334444444555554445443 235789999999999999999999999999889999999999999999743
|
| >d1c3ga1 b.4.1.1 (A:180-259) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: HSP40/DnaJ peptide-binding domain superfamily: HSP40/DnaJ peptide-binding domain family: HSP40/DnaJ peptide-binding domain domain: Heat shock protein 40 Sis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.59 E-value=8.2e-08 Score=78.64 Aligned_cols=70 Identities=13% Similarity=0.196 Sum_probs=58.1
Q ss_pred CCceeEEeeCHHHHhcCCeEEEe----cCCCe-----EEEEeCCCCCCCcEEEECCCCcCCCCCCCCccEEEEEEEECC
Q psy2902 836 DDLHYEMPISFSTAALGGEIEAP----TLNGK-----AFFVIPEGTQSGKIFRLRGKGIKNIRSSIPGDLFCHVTIETP 905 (945)
Q Consensus 836 ~dl~~~~~i~l~eal~G~~~~v~----~l~g~-----~~~~i~~~~~~g~~~~i~g~G~~~~~~~~~Gdl~v~~~i~~p 905 (945)
.++..++.|||.||+.|++.+|. ..+|. ..+.||+|+.+|++++++|+|...++.+.+|||++++++.-+
T Consensus 1 e~v~~~l~vtLee~~~G~~k~i~~~r~~~~g~~~~~~~~v~Ip~G~~~G~~i~~~g~G~~~~~~~~~GDl~~~i~~~~H 79 (80)
T d1c3ga1 1 ETVQVNLPVSLEDLFVGKKKSFKIGRKGPHGASEKTQIDIQLKPGWKAGTKITYKNQGDYNPQTGRRKTLQFVIQEKSH 79 (80)
T ss_dssp CEEEEEEEECHHHHHHTCEEEEEEEEEETTTEEEEEEEEEECCTTCCTTCEEEESSCSSBCSSSSCBCEEEEEEEECCC
T ss_pred CCEEEEeEEEHHHHhCCCceEeecceecccCCCceEEEEEEECCCCCCCcEEEECCccccCcCCCCCCCEEEEEEeCCC
Confidence 36788999999999999976654 34552 356799999999999999999987766778999999998753
|
| >d1exka_ g.54.1.1 (A:) Cysteine-rich domain of the chaperone protein DnaJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Small proteins fold: DnaJ/Hsp40 cysteine-rich domain superfamily: DnaJ/Hsp40 cysteine-rich domain family: DnaJ/Hsp40 cysteine-rich domain domain: Cysteine-rich domain of the chaperone protein DnaJ species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=2.7e-08 Score=81.16 Aligned_cols=71 Identities=23% Similarity=0.439 Sum_probs=56.2
Q ss_pred cceeeccccccccccceeeEeeccccccCCCCCccccccCc-----CcccCCCCCCCceEeEeeceeeeeecCCCCCCce
Q psy2902 691 DLRYNLEITLEQAAYGFNTSIRVPSWDICKSCYGNGAKKGT-----SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAG 765 (945)
Q Consensus 691 ~~~~~l~~~~~~~~~g~~~~~~~~~~~~C~~C~G~G~~~~~-----~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g 765 (945)
+..++|+....+..+.++..........|+.|+|+|..... ..++|+.|+|+|++ +.++|+.|+|+|
T Consensus 3 ~k~i~i~~~~~C~~C~G~G~~~g~~~~~C~~C~G~G~v~~~~g~~~~~~~C~~C~G~G~~--------i~~~C~~C~G~G 74 (79)
T d1exka_ 3 TKEIRIPTLEECDVCHGSGAKPGTQPQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTL--------IKDPCNKCHGHG 74 (79)
T ss_dssp TTSCCCCCEEECGGGTTTSBCSSSCCEECTTTTTSSEEEEEETTEEEEEECTTTTTSSEE--------CSSBCGGGTTSS
T ss_pred eEEEEeeeeccCCCCcCcccCCCccceeCCCccceeEEEEecccceeeEECcccCcceeE--------CCCCCCCCCCce
Confidence 44566666667777777776666667889999999976432 46799999999999 788999999999
Q ss_pred EEee
Q psy2902 766 KVIP 769 (945)
Q Consensus 766 ~~~~ 769 (945)
+|..
T Consensus 75 ~v~k 78 (79)
T d1exka_ 75 RVER 78 (79)
T ss_dssp EEEC
T ss_pred Eeec
Confidence 9864
|
| >d1nlta3 g.54.1.1 (A:139-212) Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Small proteins fold: DnaJ/Hsp40 cysteine-rich domain superfamily: DnaJ/Hsp40 cysteine-rich domain family: DnaJ/Hsp40 cysteine-rich domain domain: Mitochondrial protein import protein mas5 (Hsp40, Ydj1), insert domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.83 E-value=3.1e-06 Score=67.48 Aligned_cols=47 Identities=30% Similarity=0.617 Sum_probs=37.5
Q ss_pred cccCCCCCccccccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEEe
Q psy2902 716 WDICKSCYGNGAKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKVI 768 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~~ 768 (945)
..+|+.|+|+|..... ...+|+.|+|+|++ +...++|+.|+|+|++.
T Consensus 18 ~~~C~~C~G~G~~~~~~~~g~~~~~~~~~C~~C~G~G~~------i~~~~~C~~C~G~g~v~ 73 (74)
T d1nlta3 18 VKKCTSCNGQGIKFVTRQMGPMIQRFQTECDVCHGTGDI------IDPKDRCKSCNGKKVEN 73 (74)
T ss_dssp CCCCTTSSSSSCEEEEEESSSEEEEEECSCTTCSSSSSC------CCTTSBCSSSTTSCEEE
T ss_pred CCCCCCCcceeeeeEEEEecCcEEEEEEECccCccceEE------eCCCCCCCCCCCeeEeC
Confidence 3579999999986532 46799999999987 22357899999999864
|
| >d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: Diol dehydratase-reactivating factor large subunit DdrA species: Klebsiella oxytoca [TaxId: 571]
Probab=97.82 E-value=0.00023 Score=63.54 Aligned_cols=165 Identities=22% Similarity=0.279 Sum_probs=93.0
Q ss_pred ceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Q psy2902 258 RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAE 337 (945)
Q Consensus 258 ~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 337 (945)
..+.++|+||||+|.+++. .++.+.-+.-.| .|+.++..+..-| +++ + ...||
T Consensus 4 ~PlAIlDlGaGStDAsii~-----~~g~v~a~HlAG----AG~mVTmlI~seL--------Gl~---d-------~~lAE 56 (203)
T d2d0oa3 4 RPLAILDLGAGSTDASIIN-----PKGDIIATHLAG----AGDMVTMIIAREL--------GLE---D-------RYLAE 56 (203)
T ss_dssp SSEEEEEECSSEEEEEEEC-----TTCCEEEEEEEC----SHHHHHHHHHHHH--------TCC---C-------HHHHH
T ss_pred CceEEEEcCCCcccHHHhC-----CCCcEEEEEecC----cchHhHHHHHHhh--------CCC---c-------HHHHH
Confidence 4578999999999999987 566666666666 6777776664221 211 1 33456
Q ss_pred HHHHHhcCC-----------cceeeeeceeecc---------CCCCeEEEEEEcHHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy2902 338 RAKIELSSS-----------KQTEINEPYIAMS---------NGAPVHLNLKITRAKLELLVDELITRT-IEPCRIAIKD 396 (945)
Q Consensus 338 ~~K~~Ls~~-----------~~~~i~i~~~~~~---------~~~~~~~~~~itr~~~e~~~~~~i~~i-~~~i~~~l~~ 396 (945)
.+|+---.. ....+.-+.+..+ .++...++-.++-+++..+=...-++. ..-+.++|+.
T Consensus 57 ~IKkyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~d~lvP~~~~~~~Eki~~vRr~aK~kvfvtNa~RaL~~ 136 (203)
T d2d0oa3 57 EIKKYPLAKVESLFHLRHEDGSVQFFSTPLPPAVFARVCVVKADELVPLPGDLALEKVRAIRRSAKERVFVTNALRALRQ 136 (203)
T ss_dssp HHHHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEECSSCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhcchhhhccceEEEecCCceEEecCCCChHHheEEEEecCCceeecCCcccHHHHHHHHHHHhhhhhHHHHHHHHHh
Confidence 666532110 0111111111100 011112222334444443333322222 2234456665
Q ss_pred cCC--CCCCCCcEEEecCccccHHHHHHHHHHhCC--------CCCCCCCCCchhhhhHHHhh
Q psy2902 397 AGI--KVSDINDIILVGGMTRMPKVQEKVKEFFGK--------DPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 397 ~~~--~~~~i~~ViLvGG~s~~p~v~~~l~~~fg~--------~~~~~~~p~~avA~GAa~~a 449 (945)
... ...+|..|+|+||++.---|.+++.+.+.. ++.-..-|..|||.|.++.-
T Consensus 137 vsP~gnir~i~fVVlvGGsalDfEip~~vtdaLs~y~iVaGrgNIrG~eGPRnAVAtGLvl~y 199 (203)
T d2d0oa3 137 VSPTGNIRDIPFVVLVGGSSLDFEVPQLVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSW 199 (203)
T ss_dssp HSSSSCGGGCCEEEEESGGGGCSSHHHHHHHHTTTSSCEEEECCGGGTSTTSCHHHHHHHHHH
T ss_pred cCCCCCcCCCCeEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCchHHHHHHHHHHh
Confidence 432 335899999999999999999999998832 22234568889999998643
|
| >d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: ATPase domain of dehydratase reactivase alpha subunit domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit species: Klebsiella pneumoniae [TaxId: 573]
Probab=97.81 E-value=0.00015 Score=64.94 Aligned_cols=164 Identities=22% Similarity=0.315 Sum_probs=91.9
Q ss_pred ceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHH
Q psy2902 258 RNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAE 337 (945)
Q Consensus 258 ~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e 337 (945)
..+.++|+||||+|.+++. .++.+..+...| .|+.++..+...| +++ + ...||
T Consensus 4 ~plaIlDlG~GStDasii~-----~~g~v~avhlAG----AG~mVTmlI~~eL--------Gl~---d-------~~lAE 56 (202)
T d1nbwa3 4 APLAILDLGAGSTDAAIVN-----AEGQITAVHLAG----AGNMVSLLIKTEL--------GLE---D-------LSLAE 56 (202)
T ss_dssp SSEEEEEECSSEEEEEEEC-----SSSCEEEEEEEC----CHHHHHHHHHHHH--------TCS---C-------HHHHH
T ss_pred CceEEEEcCCCccchhhcc-----CCCcEEEEEecC----CchhhHHHHHHHh--------CCC---c-------HHHHH
Confidence 4578999999999999987 566666666666 6788877665321 211 0 23456
Q ss_pred HHHHHhcCC-----------cceeeeeceeeccC---------CCCeEEEEEEcHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy2902 338 RAKIELSSS-----------KQTEINEPYIAMSN---------GAPVHLNLKITRAKLELLVDELITRTI-EPCRIAIKD 396 (945)
Q Consensus 338 ~~K~~Ls~~-----------~~~~i~i~~~~~~~---------~~~~~~~~~itr~~~e~~~~~~i~~i~-~~i~~~l~~ 396 (945)
.+|+---.. ....+.-+.+.... ++...++-.++-+++..+=...-++.. .-+.++|++
T Consensus 57 ~IKkyPlakVEslf~irhEdG~v~Ff~~pl~p~~farvv~~~~~~lvP~~~~~~~Ekir~vR~~aK~~vfvtNa~RaL~~ 136 (202)
T d1nbwa3 57 AIKKYPLAKVESLFSIRHENGAVEFFREALSPAVFAKVVYIKEGELVPIDNASPLEKIRLVRRQAKEKVFVTNCLRALRQ 136 (202)
T ss_dssp HHHHSCEEEECSSSEEEETTSCEEECSSCCCGGGTTCEEEEETTEEEEECCSSCHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred HHhhcchhhhccceEEEecCCceEEecCCCChHHeeEEEEecCCceeecCCcccHHHHHHHHHHHhhHhHHHHHHHHHhh
Confidence 666532110 01111111111110 111122233444555444333333221 223455555
Q ss_pred cCCC--CCCCCcEEEecCccccHHHHHHHHHHhC-C-------CCCCCCCCCchhhhhHHHh
Q psy2902 397 AGIK--VSDINDIILVGGMTRMPKVQEKVKEFFG-K-------DPRRDINPDEAVAVGAAIQ 448 (945)
Q Consensus 397 ~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~fg-~-------~~~~~~~p~~avA~GAa~~ 448 (945)
.... ..+|..|+|+||++.---+.+++.+.+. - ++.-..-|..|||.|.++.
T Consensus 137 vsp~gnir~i~fvVlvGGsalDfEip~~vtdaLs~y~vVaGRgNIrG~eGPRnAVAtGLvls 198 (202)
T d1nbwa3 137 VSPGGSIRDIAFVVLVGGSSLDFEIPQLITEALSHYGVVAGQGNIRGTEGPRNAVATGLLLA 198 (202)
T ss_dssp SSTTCCSTTCCEEEEESGGGGSSSHHHHHHHHHHTTTCEEEECCGGGTSCSCCHHHHHHHHH
T ss_pred cCCCCCcCCCceEEEecCchhhhhHHHHHHHHHhhCceeeeccccccccCcHHHHHHHHhhh
Confidence 4332 3589999999999998888888888772 1 2223456889999999864
|
| >d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.60 E-value=0.00012 Score=72.51 Aligned_cols=167 Identities=15% Similarity=0.139 Sum_probs=92.2
Q ss_pred eEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Q psy2902 259 NIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAER 338 (945)
Q Consensus 259 ~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 338 (945)
+-||||+|.+.+.++-+.- +.. +........+||.++++.|.++|...- .+... ... ....+.
T Consensus 3 TglVVDiG~~~t~v~PV~e------G~~-l~~~~~~~~~GG~~lt~~l~~~L~~~~-----~~~~~-~~~----~~~~~~ 65 (225)
T d2fxua2 3 TGIVLDSGDGVTHNVPIYE------GYA-LPHAIMRLDLAGRDLTDYLMKILTERG-----YSFVT-TAE----REIVRD 65 (225)
T ss_dssp SEEEEEECSSCEEEEEEET------TEE-CGGGCEEESCCHHHHHHHHHHHHHHHT-----CCCCS-HHH----HHHHHH
T ss_pred EEEEEEcCCCcEEEEEEEC------CEE-chhceEEEECcHHHHHHHHHHHHhhcc-----CCcCC-HHH----HHHHHH
Confidence 4589999999999998752 211 111112246799999999988876542 11111 111 112223
Q ss_pred HHHHhcC----------------CcceeeeeceeeccCCCCeEEEEEEcHHHHH---HHHHHH-----HHHHHHHHHHHH
Q psy2902 339 AKIELSS----------------SKQTEINEPYIAMSNGAPVHLNLKITRAKLE---LLVDEL-----ITRTIEPCRIAI 394 (945)
Q Consensus 339 ~K~~Ls~----------------~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e---~~~~~~-----i~~i~~~i~~~l 394 (945)
+|+.+.. .......+| + ...+.+..+.+. -++.|. ...+.++|.+++
T Consensus 66 ~ke~~~~~~~d~~~e~~~~~~~~~~~~~~~lp----d-----g~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI 136 (225)
T d2fxua2 66 IKEKLCYVALDFENEMATAASSSSLEKSYELP----D-----GQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSI 136 (225)
T ss_dssp HHHHHCCCCSSHHHHHHHHHHCSTTCEEEECT----T-----SCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHhhcccCcccceeEECC----C-----CCEEEEchHhccccHhhcCccccCCccCChhHHHHHHh
Confidence 3333322 222222222 1 234556654442 122221 012445555555
Q ss_pred HHcCCC--CCCCCcEEEecCccccHHHHHHHHHHhC--------CCCCCCCCCCchhhhhHHHhhhh
Q psy2902 395 KDAGIK--VSDINDIILVGGMTRMPKVQEKVKEFFG--------KDPRRDINPDEAVAVGAAIQGSV 451 (945)
Q Consensus 395 ~~~~~~--~~~i~~ViLvGG~s~~p~v~~~l~~~fg--------~~~~~~~~p~~avA~GAa~~a~~ 451 (945)
..+..+ ..-...|+|+||+|.+|.+.++|...+. ..+..+.++..++=+||+++|..
T Consensus 137 ~~~~~d~r~~l~~nIvl~GG~s~~~G~~~RL~~El~~~~~~~~~~~v~~~~~~~~~aW~Ggsilasl 203 (225)
T d2fxua2 137 MKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASL 203 (225)
T ss_dssp HTSCHHHHHHHHTCEEEESGGGCSTTHHHHHHHHHHHHSCTTCCCCEECCTTTTSHHHHHHHHHHHC
T ss_pred hcCCcchhhhhhcCEEEeCCcccCCchhHHHHhHHHHhhccccceEEecCCCCCeeEEeCHhhhhcC
Confidence 543221 1113689999999999999999987651 12233456678888999999964
|
| >d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glycerol kinase domain: Glycerol kinase species: Enterococcus casseliflavus [TaxId: 37734]
Probab=97.58 E-value=3.5e-05 Score=76.89 Aligned_cols=109 Identities=20% Similarity=0.185 Sum_probs=82.7
Q ss_pred Ccceeeeeceeecc---------CCCCeEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCCCCCcEEEecCccc
Q psy2902 346 SKQTEINEPYIAMS---------NGAPVHLNLKITRAKLELLVDELITRTIEPCRIAIKD-AGIKVSDINDIILVGGMTR 415 (945)
Q Consensus 346 ~~~~~i~i~~~~~~---------~~~~~~~~~~itr~~~e~~~~~~i~~i~~~i~~~l~~-~~~~~~~i~~ViLvGG~s~ 415 (945)
.....+.+|++... .+....++...+|.+|-+.+-+.+..-...+.+.+++ .+.. ++.|.+.||.++
T Consensus 83 ~~~g~~flP~~~G~~~P~~~~~arg~~~Gl~~~~~~~~l~rAvlEgiaf~~~~~~e~~~~~~g~~---~~~i~~~GG~s~ 159 (235)
T d1r59o2 83 GDNEVYVVPAFTGLGAPYWDSEARGAVFGLTRGTTKEDFVRATLQAVAYQSKDVIDTMKKDSGID---IPLLKVDGGAAK 159 (235)
T ss_dssp SCSSCEEECCTTCCCTTTCCSSCCCEEESCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CSEEEEEESTTS
T ss_pred CCCcceeeehhhhccccccCCCcceeEeecccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEecCcchh
Confidence 34456777776421 2223456677899999998888777777777777764 5554 578999999999
Q ss_pred cHHHHHHHHHHhCCCCCCCCCCCchhhhhHHHhhhhccCCCCc
Q psy2902 416 MPKVQEKVKEFFGKDPRRDINPDEAVAVGAAIQGSVLSGDRKD 458 (945)
Q Consensus 416 ~p~v~~~l~~~fg~~~~~~~~p~~avA~GAa~~a~~~~~~~~~ 458 (945)
++.|.|++++.++.++.+..+ .++.|+|||++|+...|..++
T Consensus 160 s~~~~Qi~Advlg~~v~~~~~-~e~~alGaA~la~~~~G~~~~ 201 (235)
T d1r59o2 160 NDLLMQFQADILDIDVQRAAN-LETTALGAAYLAGLAVGFWKD 201 (235)
T ss_dssp CHHHHHHHHHHHSSEEEEESC-CCTTTHHHHHHHHHHHTSSSS
T ss_pred CHHHHhhhhhccceeeeeccc-cchHHHHHHHHHHHHcCCCCC
Confidence 999999999999999886554 468999999999987774433
|
| >d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.46 E-value=0.00019 Score=72.69 Aligned_cols=172 Identities=15% Similarity=0.123 Sum_probs=95.3
Q ss_pred eEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHHHH
Q psy2902 259 NIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASAER 338 (945)
Q Consensus 259 ~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~e~ 338 (945)
+=+|||+|.+.|+++-+.- +.. +.....-..+||.+++..|.+++.++ +........ .+.++.
T Consensus 4 TGlVVDiG~~~T~v~PV~e------G~~-l~~~~~~~~~GG~~lt~~L~~~L~~~-----~~~~~~~~~-----~~~~~~ 66 (258)
T d1k8ka2 4 TGTVIDSGDGVTHVIPVAE------GYV-IGSCIKHIPIAGRDITYFIQQLLRDR-----EVGIPPEQS-----LETAKA 66 (258)
T ss_dssp CEEEEEESSSCEEEEEEET------TEE-CGGGCEEESCSHHHHHHHHHHHHHTT-----CCCCCGGGH-----HHHHHH
T ss_pred EEEEEEcCCCcEEEEEEEC------CEE-chhheEEEeCcHHHHHHHHHHHHHHc-----CCCCCcHHH-----HHHHHh
Confidence 4589999999999998852 211 11111124679999999998877642 111111000 122233
Q ss_pred HHHHhcCCc----------------c-eeeeeceeeccCCCCeEEEEEEcHHHHH--H-HHHHH------HHHHHHHHHH
Q psy2902 339 AKIELSSSK----------------Q-TEINEPYIAMSNGAPVHLNLKITRAKLE--L-LVDEL------ITRTIEPCRI 392 (945)
Q Consensus 339 ~K~~Ls~~~----------------~-~~i~i~~~~~~~~~~~~~~~~itr~~~e--~-~~~~~------i~~i~~~i~~ 392 (945)
.|+.+.... . ..... .+........+.+..+.|. + ++.|. ...+.+.|.+
T Consensus 67 ~ke~~~~v~~d~~~e~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~er~~~~E~lF~p~~~~~~~~~~l~~~i~~ 142 (258)
T d1k8ka2 67 VKERYSYVCPDLVKEFNKYDTDGSKWIKQYTG----INAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVDE 142 (258)
T ss_dssp HHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEE----ECTTTCCEEEEEECTHHHHHHHTTTCGGGTCTTCCCCHHHHHHH
T ss_pred HHhhhcccccchHHHHHhhccccccccccccc----ccccCCCCeEEecCccceeccHHHhhhhhhcccccccchHHHHH
Confidence 333322210 0 01111 1111223556777766652 1 12111 1235677777
Q ss_pred HHHHcCCCCC--CCCcEEEecCccccHHHHHHHHHHhC------------------------CCCCCCCCCCchhhhhHH
Q psy2902 393 AIKDAGIKVS--DINDIILVGGMTRMPKVQEKVKEFFG------------------------KDPRRDINPDEAVAVGAA 446 (945)
Q Consensus 393 ~l~~~~~~~~--~i~~ViLvGG~s~~p~v~~~l~~~fg------------------------~~~~~~~~p~~avA~GAa 446 (945)
++..+..+.. -...|+|+||+|.+|.+.++|...+. .++..+.++..++=+||+
T Consensus 143 si~~~~~d~r~~L~~nIvl~GG~s~~~Gf~eRL~~EL~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~~r~~s~W~Ggs 222 (258)
T d1k8ka2 143 VIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPKPIDVQVITHHMQRYAVWFGGS 222 (258)
T ss_dssp HHHHSCGGGTTHHHHCEEEESGGGCSTTHHHHHHHHHHHHHHHHHHHHHHHC----CCCCCCCCEECCTTCTTHHHHHHH
T ss_pred HHHhccHHhhHHHHhCEEEecCcccCCCHHHHHHHHHHhhcchhhhhhhhccccccCCCCceeeEecCCCCCceehHHHH
Confidence 7777654322 24679999999999999998865541 112223356678888999
Q ss_pred Hhhhh
Q psy2902 447 IQGSV 451 (945)
Q Consensus 447 ~~a~~ 451 (945)
++|..
T Consensus 223 ila~l 227 (258)
T d1k8ka2 223 MLAST 227 (258)
T ss_dssp HHTTS
T ss_pred HHHcC
Confidence 99864
|
| >d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: DnaK species: Escherichia coli [TaxId: 562]
Probab=97.34 E-value=5.6e-05 Score=63.69 Aligned_cols=66 Identities=44% Similarity=0.661 Sum_probs=60.5
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 577 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
||++||++|++.++.+..+|...|++.+++|.++++++.+++.+. ++.+.|+++++..+...+...
T Consensus 1 LS~~EIerMi~eAe~~a~eD~~~r~~ie~rn~ae~~i~~~e~~l~--e~~~~l~~~~k~~i~~~i~~l 66 (97)
T d1dkza1 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVE--EAGDKLPADDKTAIESALTAL 66 (97)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhccCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999886 677889999999988776653
|
| >d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 2, Arp2 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.29 E-value=0.00051 Score=65.86 Aligned_cols=147 Identities=18% Similarity=0.177 Sum_probs=78.9
Q ss_pred EEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHHHHHHHHHHHHHhCCCCccCHHHHHHHHHHH----
Q psy2902 261 VVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRIIDYILDEFNKINGIDLRKDSIALQRIKASA---- 336 (945)
Q Consensus 261 lVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~---- 336 (945)
||+|+|.+.|.++-+-- +.. +........+||.++++.|.+.+.+.-. ......+......+.+.+
T Consensus 2 lVVDiG~~~T~v~PV~d------G~~-l~~a~~~~~igG~~lt~~l~~~l~~~~~---~~~~~~~~~~~~~i~~~~~~v~ 71 (190)
T d1k8kb1 2 VVVDSGDGVTHICPVYE------GFS-LPHLTRRLDIAGRDITRYLIKLLLLRGY---AFNHSADFETVRMIKEKLCYVG 71 (190)
T ss_dssp CEEEECSSCEEEECEET------TEE-CSTTCEEESCCHHHHHHHHHHHHHHTTC---CCCTTTTHHHHHHHHHHHCCCC
T ss_pred EEEEcCCCcEEEEEeEC------CEE-cccceEEEeccHHHHHHHHHHHHHhcCC---cccchHHHHHHHHHHhhhhhhc
Confidence 68999999999997742 211 1111122467999999988877754211 111111111111111110
Q ss_pred -----HHHHHHhcCCcceeeeeceeeccCCCCeEEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCCCC
Q psy2902 337 -----ERAKIELSSSKQTEINEPYIAMSNGAPVHLNLKITRAKLELLVDELIT---------RTIEPCRIAIKDAGIKVS 402 (945)
Q Consensus 337 -----e~~K~~Ls~~~~~~i~i~~~~~~~~~~~~~~~~itr~~~e~~~~~~i~---------~i~~~i~~~l~~~~~~~~ 402 (945)
+..+............+|. ...+.+..+.|. +.+.+++ .+.++|.+++..+..+..
T Consensus 72 ~~~~~e~~~~~~~~~~~~~~~lpd---------g~~i~i~~er~~-~~E~lF~p~~~~~~~~~l~~~i~~si~~c~~d~r 141 (190)
T d1k8kb1 72 YNIEQEQKLALETTVLVESYTLPD---------GRIIKVGGERFE-APEALFQPHLINVEGVGVAELLFNTIQAADIDTR 141 (190)
T ss_dssp SSHHHHHHHHHHCSTTCEEEECTT---------SCEEEECTHHHH-TGGGGTCGGGGTCCSCCHHHHHHHHHHHSCTTTH
T ss_pred ccHHHHHHhhhcccceeeeeecCC---------CcEEEEChhhcc-ccccccChhhcCcccccHHHHHHHHHHhCCHhHH
Confidence 1111111222222222221 234666666553 2222222 266777788877654422
Q ss_pred --CCCcEEEecCccccHHHHHHHHHHh
Q psy2902 403 --DINDIILVGGMTRMPKVQEKVKEFF 427 (945)
Q Consensus 403 --~i~~ViLvGG~s~~p~v~~~l~~~f 427 (945)
-...|+|+||+|.+|.+.++|...+
T Consensus 142 ~~L~~NIvl~GG~Sl~pGf~~RL~~EL 168 (190)
T d1k8kb1 142 SEFYKHIVLSGGSTMYPGLPSRLEREL 168 (190)
T ss_dssp HHHHTTCEEESGGGCSTTHHHHHHHHH
T ss_pred HHHHcCEEEECcccCCCCHHHHHHHHH
Confidence 2478999999999999999998765
|
| >d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: immunoglobulin/albumin-binding domain-like superfamily: Heat shock protein 70kD (HSP70), C-terminal subdomain family: Heat shock protein 70kD (HSP70), C-terminal subdomain domain: Chaperone protein hscA (Hsc66) species: Escherichia coli [TaxId: 562]
Probab=96.98 E-value=0.0002 Score=61.92 Aligned_cols=66 Identities=30% Similarity=0.442 Sum_probs=60.8
Q ss_pred CcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccc
Q psy2902 577 LTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHA 644 (945)
Q Consensus 577 ~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~ 644 (945)
||++||++|++.+..+..+|...|.+.+++|.++.+++.+++.+. +..+.|+.+++..+...+...
T Consensus 1 LS~eEIerMi~eA~~~a~eD~~~R~~ie~~n~ae~~i~~~e~~L~--e~~~~L~~~e~~~i~~~i~~l 66 (112)
T d1u00a1 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALA--ADAALLSAAERQVIDDAAAHL 66 (112)
T ss_dssp CCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHGGGSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhHhhCCHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999999999986 677889999999988877653
|
| >d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.42 E-value=0.0046 Score=55.58 Aligned_cols=71 Identities=8% Similarity=-0.043 Sum_probs=52.7
Q ss_pred CeeeChhhHHHHHHHHHHHHHHHHhCCC--CCcEEEEcCCCCCHHHHHHHHHH-HHHcCCccceecchhHHHHHHhc
Q psy2902 176 GKKLAPPQISAEVLRKMKKTAEDYLGGE--ITEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAFG 249 (945)
Q Consensus 176 ~~~~~~~ev~a~~L~~l~~~a~~~~~~~--~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~v~li~Ep~AAAl~~~ 249 (945)
...+...+....++.++... .+... ...++||-|.......|+.+.+. .+..+++.+.+...|.++++++|
T Consensus 67 ~g~v~dwd~~e~~~~~~~~~---~l~~~~~~~pvlltE~~~~~~~~r~~~~EilFE~~~vp~~~~~~~~~ls~ys~G 140 (140)
T d2fxua1 67 HGIITNWDDMEKIWHHTFYN---ELRVAPEEHPTLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASG 140 (140)
T ss_dssp TTEECCHHHHHHHHHHHHHT---TSCCCGGGSCEEEEECTTCCHHHHHHHHHHHHHTTCCSEEEEEEHHHHHHHHTT
T ss_pred CCcccCHHHHHHHHHHhhhh---hcccCCCCCcceeeccCCCCHHHHHHHHHHhhccCCCCEEEEEhhHHhHhhcCC
Confidence 34455566666677766642 23333 34589999999999999988666 47779999999999999998764
|
| >d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Actin-related protein 3, Arp3 species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.23 E-value=0.0053 Score=56.42 Aligned_cols=75 Identities=15% Similarity=0.044 Sum_probs=54.4
Q ss_pred CCeeeChhhHHHHHHHHHHHHHHHHhCC--CCCcEEEEcCCCCCHHHHHHHHHH-HHHcCCccceecchhHHHHHHhccC
Q psy2902 175 RGKKLAPPQISAEVLRKMKKTAEDYLGG--EITEAVITVPAYFNDAQRQATKDA-GRIAGLEVKRIINEPTAAALAFGLD 251 (945)
Q Consensus 175 ~~~~~~~~ev~a~~L~~l~~~a~~~~~~--~~~~~VitVPa~~~~~qr~~l~~A-a~~AGl~~v~li~Ep~AAAl~~~~~ 251 (945)
....+...+....++.++... .+.. .-..++||-|...+..+|+.+.+. .+..+++.+.+...|..++++++..
T Consensus 77 ~~G~i~dwd~~e~l~~~~~~~---~l~v~~~~~pvlltEp~~~~~~~Re~~~EilFE~~~vpa~~~~~~~~Lslya~g~~ 153 (158)
T d1k8ka1 77 RHGIVEDWDLMERFMEQVIFK---YLRAEPEDHYFLLTEPPLNTPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTS 153 (158)
T ss_dssp ETTEESCHHHHHHHHHHHHHT---TTCCCGGGCCEEEEECTTCCHHHHHHHHHHHHHTSCCSEEEEEEHHHHHHHHGGGS
T ss_pred cCCeEecHHHHHHHHHHHHHH---hcccCCCCCceeeeecCCCCHHHHHHHHHHHhhhcCCCEEEEEchhhhhheeCCCC
Confidence 334455566666666655432 2332 234689999999999999988665 5777999999999999999998765
Q ss_pred C
Q psy2902 252 K 252 (945)
Q Consensus 252 ~ 252 (945)
.
T Consensus 154 ~ 154 (158)
T d1k8ka1 154 R 154 (158)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSP40 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.22 E-value=0.0011 Score=52.74 Aligned_cols=60 Identities=38% Similarity=0.617 Sum_probs=46.8
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
.-|.+||.+..+++....++|+. ... ...+.+..+.+||++|+++++|+.||.+|+.|++
T Consensus 14 ~as~~eIk~ay~~l~~~~hPD~~---------~~~---~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~~ 73 (77)
T d1hdja_ 14 GASDEEIKRAYRRQALRYHPDKN---------KEP---GAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLK 73 (77)
T ss_dssp TCCHHHHHHHHHHHHHTTCTTTC---------CCT---THHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGCC
T ss_pred CcCHHHHHHHHHHHHHHhccccc---------cch---hHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence 46788999888888887787752 111 1224567788999999999999999999998875
|
| >d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: DnaJ chaperone, N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.0026 Score=50.19 Aligned_cols=61 Identities=43% Similarity=0.659 Sum_probs=47.6
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhccccCC
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAGID 647 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g~~ 647 (945)
.-|.+||.+..+++....++|+. .... .....|..+.+||++|+++++|..||.+|..++.
T Consensus 14 ~As~~eIk~aYr~l~~~~HPDk~---------~~~~--~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~~e 74 (75)
T d1xbla_ 14 TAEEREIRKAYKRLAMKYHPDRN---------QGDK--EAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE 74 (75)
T ss_dssp SCCHHHHHHHHHHHHHHTCCTTC---------TTTC--HHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSSCC
T ss_pred CcCHHHHHHHHHHHHhhhhhhcc---------CCCh--HHHHHHHHHHHHHHhcCCHHHHHHHHHhCccccC
Confidence 46889999999999988888862 2111 1224578889999999999999999999877653
|
| >d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: Probable N-acetylglucosamine kinase CV2896 species: Chromobacterium violaceum [TaxId: 536]
Probab=95.21 E-value=0.064 Score=45.68 Aligned_cols=40 Identities=8% Similarity=0.056 Sum_probs=28.0
Q ss_pred EEEEcCCCCCHHHHHHHHHHHHHcCCccceecchhHHHHHHh
Q psy2902 207 AVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248 (945)
Q Consensus 207 ~VitVPa~~~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~ 248 (945)
+.+.+|..........+.+.. -.+..+.+.++..||+++.
T Consensus 72 ~~~g~aG~~~~~~~~~l~~~~--~~~~~v~v~nDa~~A~~ga 111 (114)
T d1zc6a1 72 IGLGLSGVHNRQWAGEFESQA--PGFARLSLATDGYTTLLGA 111 (114)
T ss_dssp EEEEESCCCTTSHHHHHHHTC--CCCSEEEEECHHHHHHHHH
T ss_pred EEEEecCCCcHHHHHHHHHhC--CCCCeEEEECHHHHHHHHh
Confidence 567888777766666665432 2345788999999999864
|
| >d2i7na2 c.55.1.14 (A:382-593) Pantothenate kinase 1, PANK1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Pantothenate kinase 1, PANK1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.073 Score=50.82 Aligned_cols=74 Identities=18% Similarity=0.161 Sum_probs=45.5
Q ss_pred cHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCCCCCCcEEEecCccccHHHHHHHHH----Hh---CCCCCCCCCCCchhh
Q psy2902 371 TRAKLELLVDEL-ITRTIEPCRIAIKDAGIKVSDINDIILVGGMTRMPKVQEKVKE----FF---GKDPRRDINPDEAVA 442 (945)
Q Consensus 371 tr~~~e~~~~~~-i~~i~~~i~~~l~~~~~~~~~i~~ViLvGG~s~~p~v~~~l~~----~f---g~~~~~~~~p~~avA 442 (945)
+++++...+... .+.+......+.+..+ ++.|+++||.+....+++.+.+ ++ +.++..+.+...+.|
T Consensus 129 ~~~DiaaS~q~~v~~~l~~~a~~aa~~~~-----~k~iv~~Ggv~aN~~lr~~l~~~~~~~~~~~~i~~~Fp~~~~y~ga 203 (212)
T d2i7na2 129 SKEDLARATLVTITNNIGSIARMCALNEN-----IDRVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGA 203 (212)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----CCCEEEESGGGCSSSHHHHHHHHHHHHHTTTSCCEEEETTTTCHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CCEEEEECcHhhCHHHHHHHHHHHHHHHhhCCceEEecCChhhhHH
Confidence 445554433332 2333333444444443 5799999998877766666543 34 345556778899999
Q ss_pred hhHHHhh
Q psy2902 443 VGAAIQG 449 (945)
Q Consensus 443 ~GAa~~a 449 (945)
+||++.-
T Consensus 204 lGA~l~~ 210 (212)
T d2i7na2 204 VGALLEL 210 (212)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998754
|
| >d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Di-heme elbow motif domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain species: Shewanella oneidensis [TaxId: 70863]
Probab=94.37 E-value=0.0009 Score=55.27 Aligned_cols=65 Identities=18% Similarity=0.324 Sum_probs=46.6
Q ss_pred ccCCCCCccccccCc---CcccCCCCCCCceEeEee----ceeeeeecCCCCCCceEEeecCCcccCCCceE
Q psy2902 717 DICKSCYGNGAKKGT---SPISCFTCSGQGQVRMQQ----GFFSIQQTCPKCQGAGKVIPHPCLDCNGIGRI 781 (945)
Q Consensus 717 ~~C~~C~G~G~~~~~---~~~~C~~C~G~G~~~~~~----~~~~~~~~C~~C~G~g~~~~~~c~~c~G~g~~ 781 (945)
..|..|+|.|..... ....|..|+|.|...... +....-..|..|+|.|...+..|..|.+.|..
T Consensus 12 ~~C~~CH~~~~~~~~~~~~~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~~~~~C~~CH~~gr~ 83 (90)
T d1m1qa_ 12 GGCESCHKDGTPSADGAFEFAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVGQKPTCESCHDDGRT 83 (90)
T ss_dssp TCGGGTSGGGCCCSSSHHHHHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTTCCCCSTTTCSSCCC
T ss_pred CCCCCcCCCCccccCCCCCCCcCcccCCCceeEeeccccccCccccccCccccCCCCcCCCccccccCCCcc
Confidence 369999998865433 245799999998653222 11234567889999998888999999998754
|
| >d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Glucokinase domain: Glucokinase Glk species: Escherichia coli [TaxId: 562]
Probab=91.60 E-value=1.9 Score=43.21 Aligned_cols=21 Identities=19% Similarity=0.215 Sum_probs=18.1
Q ss_pred ceEEEEcCccceEEEEEeCCc
Q psy2902 72 KIIGIDLGTTNSCVSIIEGSQ 92 (945)
Q Consensus 72 ~viGID~GTt~s~va~~~~~~ 92 (945)
|.|+||+|-|++++++++...
T Consensus 2 y~L~~DIGGT~ir~glvd~~~ 22 (319)
T d1sz2a1 2 YALVGDVGGTNARLALCDIAS 22 (319)
T ss_dssp EEEEEEEETTEEEEEEEETTT
T ss_pred EEEEEEEChhheeeEEEECCC
Confidence 479999999999999987543
|
| >d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Actin/HSP70 domain: Cell division protein FtsA species: Thermotoga maritima [TaxId: 2336]
Probab=90.67 E-value=0.76 Score=42.72 Aligned_cols=33 Identities=3% Similarity=-0.254 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHcCCccceecchhHHHHHHh
Q psy2902 216 NDAQRQATKDAGRIAGLEVKRIINEPTAAALAF 248 (945)
Q Consensus 216 ~~~qr~~l~~Aa~~AGl~~v~li~Ep~AAAl~~ 248 (945)
.....+.+.++++.+|+++..++.+|.|+|.+.
T Consensus 160 ~~~~i~nl~~~~~~~~l~v~~~~~~~~asa~a~ 192 (193)
T d1e4ft1 160 PLKVYEMFYNFLQDTVKSPFQLKSSLVSTAEGV 192 (193)
T ss_dssp EHHHHHHHHHHHHHHSCSCEEEEEHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCcchhEEEhHHhhhhcc
Confidence 466788999999999999999999999999875
|
| >d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: BadF/BadG/BcrA/BcrD-like domain: N-acetylglucosamine kinase, NAGK species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.71 E-value=1.7 Score=36.41 Aligned_cols=45 Identities=9% Similarity=0.003 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCCCCHHHHHHHHHHHHHc--CC-ccceecchhHHHHHH
Q psy2902 203 EITEAVITVPAYFNDAQRQATKDAGRIA--GL-EVKRIINEPTAAALA 247 (945)
Q Consensus 203 ~~~~~VitVPa~~~~~qr~~l~~Aa~~A--Gl-~~v~li~Ep~AAAl~ 247 (945)
.+..+.+.++..=.+..++.+.++.... ++ ..+.+.++..||..+
T Consensus 67 ~i~~i~~GlAG~~~~~~~~~l~~~l~~~~~~~~~~v~v~nDa~~Al~~ 114 (117)
T d2ch5a2 67 PLRSLGLSLSGGDQEDAGRILIEELRDRFPYLSESYLITTDAAGSIAT 114 (117)
T ss_dssp CBSEEEEEETTTTCHHHHHHHHHHHHHHCTTSBSCEEEEEHHHHHHHH
T ss_pred cccEEEEEeeccCcchhHHHHHHHHHHHCCCCCceEEEeccHHHHHhh
Confidence 4667889999876788888888887665 55 457788888877654
|
| >d1m1qa_ a.138.1.3 (A:) Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain {Shewanella oneidensis [TaxId: 70863]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Multiheme cytochromes superfamily: Multiheme cytochromes family: Di-heme elbow motif domain: Flavocytochrome c3 (respiratory fumarate reductase), N-terminal domain species: Shewanella oneidensis [TaxId: 70863]
Probab=89.15 E-value=0.03 Score=45.59 Aligned_cols=44 Identities=20% Similarity=0.511 Sum_probs=34.1
Q ss_pred cccCCCCCccccccCc---------CcccCCCCCCCceEeEeeceeeeeecCCCCCCceEE
Q psy2902 716 WDICKSCYGNGAKKGT---------SPISCFTCSGQGQVRMQQGFFSIQQTCPKCQGAGKV 767 (945)
Q Consensus 716 ~~~C~~C~G~G~~~~~---------~~~~C~~C~G~G~~~~~~~~~~~~~~C~~C~G~g~~ 767 (945)
...|..|+|.|..... .-..|+.|+|.|.. ....|..|++.|+.
T Consensus 31 ~~~C~~CHg~~~~~~~~~~~h~~~~~c~~CH~~H~~~~~--------~~~~C~~CH~~gr~ 83 (90)
T d1m1qa_ 31 FAQCQSCHGKLSEMDAVHKPHDGNLVCADCHAVHDMNVG--------QKPTCESCHDDGRT 83 (90)
T ss_dssp HHHHHHHHCCGGGSCTTTGGGTTTCCGGGTCCTTTSBTT--------CCCCSTTTCSSCCC
T ss_pred CCcCcccCCCceeEeeccccccCccccccCccccCCCCc--------CCCccccccCCCcc
Confidence 3579999999975422 35788888888876 67889999999863
|
| >d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Fumble-like domain: Type II pantothenate kinase, CoaW species: Staphylococcus aureus [TaxId: 1280]
Probab=88.72 E-value=0.31 Score=47.69 Aligned_cols=46 Identities=20% Similarity=0.263 Sum_probs=37.6
Q ss_pred CCcEEEecCc-cccHHHHHHHHHHh---CCCCCCCCCCCchhhhhHHHhh
Q psy2902 404 INDIILVGGM-TRMPKVQEKVKEFF---GKDPRRDINPDEAVAVGAAIQG 449 (945)
Q Consensus 404 i~~ViLvGG~-s~~p~v~~~l~~~f---g~~~~~~~~p~~avA~GAa~~a 449 (945)
+..|++.||. +..|.+++.+++++ +.++..+.+++.+-|+|||+++
T Consensus 217 ~~~Iv~~GG~~~~~~~l~~~i~~~~~~~~~~i~~~~~~~~aGaiGA~~L~ 266 (267)
T d2ewsa1 217 TENIVYIGSSFHNNALLRKVVEDYTVLRGCKPYYVENGAFSGAIGALYLE 266 (267)
T ss_dssp CCEEEEESGGGTTCHHHHHHHHHHHHHTTCEEEECTTGGGHHHHHHHHTC
T ss_pred CCCEEEECChhhcCHHHHHHHHHHHHhCCCEEEECCCccHHHHHHHHHhc
Confidence 4688988885 67999999999988 4455567788899999999876
|
| >d2fsja2 c.55.1.12 (A:1-164) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ta0583-like domain: Hypothetical protein Ta0583 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=87.23 E-value=0.051 Score=49.81 Aligned_cols=43 Identities=21% Similarity=0.023 Sum_probs=31.5
Q ss_pred cEEEEcCCCCCHHHHHHHHHHHHHc--------CC------ccceecchhHHHHHHh
Q psy2902 206 EAVITVPAYFNDAQRQATKDAGRIA--------GL------EVKRIINEPTAAALAF 248 (945)
Q Consensus 206 ~~VitVPa~~~~~qr~~l~~Aa~~A--------Gl------~~v~li~Ep~AAAl~~ 248 (945)
.+|+..|..+...+++++++....- |. ..+.+++||.+|.++.
T Consensus 103 ~lv~GLP~~~~~~~ke~~~~~l~~~~~~~~~~~g~~~~i~I~~v~V~pQg~ga~~~~ 159 (164)
T d2fsja2 103 VIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLIMRPQGVGAALYL 159 (164)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHTTEEEEEECGGGCEEEEEEEEEEEEETTHHHHHHH
T ss_pred EEEecCCHHHHHHHHHHHHHHhcCCCceEEeeCCeEEEEEEeEEEEecCCHHHHHHH
Confidence 3678889998888899998876421 11 3456799999988855
|
| >d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: HSC20 (HSCB), N-terminal (J) domain species: Escherichia coli [TaxId: 562]
Probab=86.75 E-value=0.095 Score=40.90 Aligned_cols=60 Identities=17% Similarity=0.157 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHH
Q psy2902 575 SGLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQ 640 (945)
Q Consensus 575 ~~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~ 640 (945)
..++++||.+..+++....++|+..-.-.. ....+...+..+++||++|+++++|..|..
T Consensus 13 ~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~------~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll 72 (76)
T d1fpoa1 13 YQLDTQALSLRFQDLQRQYHPDKFASGSQA------EQLAAVQQSATINQAWQTLRHPLMRAEYLL 72 (76)
T ss_dssp SCCCHHHHHHHHHHHHHHTCGGGGTTSCHH------HHHHHHHHHHHHHHHHHHHHSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhCccccccchHH------HHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 456799999999999999999974211000 011123355677899999999999999964
|
| >d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.13 E-value=0.027 Score=46.20 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=42.8
Q ss_pred CCcHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhc
Q psy2902 576 GLTEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYG 642 (945)
Q Consensus 576 ~~~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~ 642 (945)
.-+.+||.+..+++....++|+... ....+........+..|++||++|+++++|+.||.-.
T Consensus 27 ~as~~eIk~aY~~l~~~~HPDk~~~-----~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~ 88 (94)
T d1wjza_ 27 SANMSDLKQKYQKLILLYHPDKQSA-----DVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQR 88 (94)
T ss_dssp TCCHHHHHHHHHHTTSSSCSTTCCT-----TCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHS
T ss_pred CcCHHHHHHHHHHHHHHhhhhhccc-----cchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHcc
Confidence 4578899999988888888885210 0000111122345778889999999999999999764
|
| >d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Long alpha-hairpin superfamily: Chaperone J-domain family: Chaperone J-domain domain: Large T antigen, the N-terminal J domain species: Simian virus 40, Sv40 [TaxId: 10633]
Probab=84.53 E-value=0.057 Score=46.04 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHhHHHHHHHHHHHHhcccCcceeeeccchhhhhhhhhccChhHHHHHHHHhcccc
Q psy2902 578 TEEEIKKMVQSAEANAEEDKRLRELAESRNHGESLIHSTKKSLKIKEAYEVLSDSEKRIIYDQYGHAG 645 (945)
Q Consensus 578 ~~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~~e~~~~~~~~~~~~~~~~~~l~~~~k~~~~d~~~~~g 645 (945)
+.++|.+..++++...++|+ +. +..+|..|++||++|+++++++.||..+...
T Consensus 23 ~~~~IKkAYrkla~k~HPDk---------~~------~~e~F~~I~~AY~vLsd~~kR~~YD~~~~~~ 75 (114)
T d1gh6a_ 23 NIPLMRKAYLKKCKEFHPDK---------GG------DEEKMKKMNTLYKKMEDGVKYAHQPDFGGFW 75 (114)
T ss_dssp CHHHHHHHHHHTTTTCCTTT---------CC------TTTTTHHHHHHHHHHHHHHHSCCSSCCSCCC
T ss_pred CHHHHHHHHHHHHHHhcccc---------hh------hHHHHHHHHHHHHHhCCHHHHHHHhccCCCC
Confidence 57788888888888778874 22 2357899999999999999999999776543
|
| >d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribonuclease H-like motif superfamily: Actin-like ATPase domain family: Ppx/GppA phosphatase domain: Exopolyphosphatase Ppx species: Aquifex aeolicus [TaxId: 63363]
Probab=80.32 E-value=1.3 Score=40.56 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=27.8
Q ss_pred CceEEEEEeCCcceEEEEEEEEeecCCceEEEEEecCCCCCchHHHHHHH
Q psy2902 257 DRNIVVYDLGGGTFDVSIIEIADVDGEKQFEVLSTNGDTFLGGEDFDQRI 306 (945)
Q Consensus 257 ~~~vlVvD~GggT~dvsv~~~~~~~~~~~~~vl~~~~~~~lGG~~iD~~l 306 (945)
...+||+|+|||+|.+++++- ....... ...+|...+.+.+
T Consensus 2 e~~~lviDIGGGStEli~~~~-----~~i~~~~----Sl~lG~vrl~e~f 42 (180)
T d1t6ca2 2 EGEVCVVDQGGGSTEYVFGKG-----YKVREVI----SLPIGIVNLTETF 42 (180)
T ss_dssp CSEEEEEEEETTEEEEEEEET-----TEEEEEE----EECCCHHHHHHHH
T ss_pred CCCEEEEEeCCChHhhEEeeC-----CceeeEE----EeecceEEeeccc
Confidence 467999999999999998862 2222221 2346887776655
|