Psyllid ID: psy2912

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
MNNKSKLANLVISLLLINFTTETDSNHTMNVTNSTGIFEGNSTENDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYYMSKKQGRKSASIPTQCYRTT
cccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccHHcHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccEEcc
ccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccHHEEEEcccccccccEEEEccc
MNNKSKLANLVISLLLINfttetdsnhtmnvtnstgifegnstendtdACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILIclpptvvwdVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTflckeesflttgislypkssyymskkqgrksasiptqcyrtt
MNNKSKLANLVISLLLINFttetdsnhtmnVTNSTgifegnstenDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIgtflckeesfLTTGISLYPKSSyymskkqgrksasiptqcyrtt
MNNKSKLANLVISLLLINFTTETDSNHTMNVTNSTGIFEGNSTENDTDACMQIKNMTCeeyedyideiieyVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYYMSKKQGRKSASIPTQCYRTT
******LANLVISLLLINFTTETDSNHTMNVTNSTGIFE*******TDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYY********************
*************LLLINFT***************GIFEGNSTENDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYYMSKKQGRKSASIPTQCYR**
MNNKSKLANLVISLLLINFTTETDSNHTMNVTNSTGIFEGNSTENDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYYM*******************
********NLVI*********************************************CEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYYMSKKQGRKSASIPTQCY***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNNKSKLANLVISLLLINFTTETDSNHTMNVTNSTGIFEGNSTENDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVIFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYYMSKKQGRKSASIPTQCYRTT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query232 2.2.26 [Sep-21-2011]
P58308 460 Orexin receptor type 2 OS yes N/A 0.431 0.217 0.578 1e-26
P56719 460 Orexin receptor type 2 OS yes N/A 0.431 0.217 0.578 2e-26
O43614 444 Orexin receptor type 2 OS yes N/A 0.431 0.225 0.578 2e-26
Q9TUP7 444 Orexin receptor type 2 OS yes N/A 0.431 0.225 0.568 3e-26
Q0GBZ5 425 Orexin receptor type 1 OS no N/A 0.439 0.24 0.514 5e-25
P58307 416 Orexin receptor type 1 OS no N/A 0.426 0.237 0.509 9e-25
P56718 416 Orexin receptor type 1 OS no N/A 0.426 0.237 0.509 1e-24
O43613 425 Orexin receptor type 1 OS no N/A 0.426 0.232 0.528 4e-21
Q9Z2D5 381 Neuropeptide Y receptor t no N/A 0.724 0.440 0.336 2e-16
P79113 384 Neuropeptide Y receptor t no N/A 0.711 0.429 0.340 8e-16
>sp|P58308|OX2R_MOUSE Orexin receptor type 2 OS=Mus musculus GN=Hcrtr2 PE=2 SV=2 Back     alignment and function desciption
 Score =  119 bits (299), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/102 (57%), Positives = 74/102 (72%), Gaps = 2/102 (1%)

Query: 59  EEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIV 118
           EE+  Y+    EY+ P   EWVLIA   IVFVV LIGN LVC+AV++N  MRTVTNY+IV
Sbjct: 37  EEFLRYLWR--EYLHPKEYEWVLIAGYIIVFVVALIGNVLVCVAVWKNHHMRTVTNYFIV 94

Query: 119 NLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVI 160
           NL++AD LV + CLP T+V D+TETWF G  LC+V+ Y Q +
Sbjct: 95  NLSLADVLVTITCLPATLVVDITETWFFGQSLCKVIPYLQTV 136
Nonselective, high-affinity receptor for both orexin-A and orexin-B neuropeptides.
Mus musculus (taxid: 10090)
>sp|P56719|OX2R_RAT Orexin receptor type 2 OS=Rattus norvegicus GN=Hcrtr2 PE=2 SV=1 Back     alignment and function description
>sp|O43614|OX2R_HUMAN Orexin receptor type 2 OS=Homo sapiens GN=HCRTR2 PE=2 SV=2 Back     alignment and function description
>sp|Q9TUP7|OX2R_CANFA Orexin receptor type 2 OS=Canis familiaris GN=HCRTR2 PE=1 SV=1 Back     alignment and function description
>sp|Q0GBZ5|OX1R_BOVIN Orexin receptor type 1 OS=Bos taurus GN=HCRTR1 PE=2 SV=1 Back     alignment and function description
>sp|P58307|OX1R_MOUSE Orexin receptor type 1 OS=Mus musculus GN=Hcrtr1 PE=2 SV=3 Back     alignment and function description
>sp|P56718|OX1R_RAT Orexin receptor type 1 OS=Rattus norvegicus GN=Hcrtr1 PE=2 SV=1 Back     alignment and function description
>sp|O43613|OX1R_HUMAN Orexin receptor type 1 OS=Homo sapiens GN=HCRTR1 PE=2 SV=2 Back     alignment and function description
>sp|Q9Z2D5|NPY2R_CAVPO Neuropeptide Y receptor type 2 OS=Cavia porcellus GN=NPY2R PE=3 SV=1 Back     alignment and function description
>sp|P79113|NPY2R_BOVIN Neuropeptide Y receptor type 2 OS=Bos taurus GN=NPY2R PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
328715520253 PREDICTED: neuropeptide Y receptor type 0.547 0.501 0.579 4e-39
345484951 453 PREDICTED: orexin receptor type 2-like [ 0.525 0.269 0.590 6e-38
197209952 533 neuropeptide receptor A5 precursor [Bomb 0.655 0.285 0.550 1e-37
241810723146 G protein-coupled receptor, putative [Ix 0.590 0.938 0.574 2e-36
380011982 435 PREDICTED: orexin receptor type 2-like [ 0.564 0.301 0.560 3e-36
323433877 457 allatotropin receptor [Manduca sexta] 0.672 0.341 0.519 5e-36
357602519132 neuropeptide receptor A5 [Danaus plexipp 0.422 0.742 0.734 1e-35
340728353 440 PREDICTED: orexin receptor type 2-like [ 0.504 0.265 0.627 1e-35
350403259 440 PREDICTED: orexin receptor type 2-like [ 0.456 0.240 0.669 1e-35
344310426 632 allatotropin receptor [Aedes aegypti] 0.517 0.189 0.562 2e-35
>gi|328715520|ref|XP_003245651.1| PREDICTED: neuropeptide Y receptor type 2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/145 (57%), Positives = 106/145 (73%), Gaps = 18/145 (12%)

Query: 28  TMNVTNSTGIFEGNST--------------ENDTDACMQIKNMTCEEYEDYIDEIIEYVK 73
           TM   ++TG+ EG+                +NDT+   ++ N T EEY +Y+   ++Y+ 
Sbjct: 24  TMIAFSTTGVAEGHVNLTIRRESTVPSFVKDNDTEYD-EMANYTDEEYHNYL---VDYIT 79

Query: 74  PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
           P  SEWV I + S+VFVVGLIGNALVC+AVYRN++MRTVTNY+IVNLAVADFLVILICLP
Sbjct: 80  PRKSEWVFIVMHSMVFVVGLIGNALVCVAVYRNRTMRTVTNYFIVNLAVADFLVILICLP 139

Query: 134 PTVVWDVTETWFMGLVLCRVVLYSQ 158
           PTVVWDVTETWFMG + C++VLY Q
Sbjct: 140 PTVVWDVTETWFMGTIACKMVLYFQ 164

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345484951|ref|XP_001604582.2| PREDICTED: orexin receptor type 2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|197209952|ref|NP_001127740.1| neuropeptide receptor A5 precursor [Bombyx mori] gi|195946978|dbj|BAG68403.1| neuropeptide receptor A5 [Bombyx mori] Back     alignment and taxonomy information
>gi|241810723|ref|XP_002416436.1| G protein-coupled receptor, putative [Ixodes scapularis] gi|215510900|gb|EEC20353.1| G protein-coupled receptor, putative [Ixodes scapularis] Back     alignment and taxonomy information
>gi|380011982|ref|XP_003690070.1| PREDICTED: orexin receptor type 2-like [Apis florea] Back     alignment and taxonomy information
>gi|323433877|gb|ADX66344.1| allatotropin receptor [Manduca sexta] Back     alignment and taxonomy information
>gi|357602519|gb|EHJ63432.1| neuropeptide receptor A5 [Danaus plexippus] Back     alignment and taxonomy information
>gi|340728353|ref|XP_003402490.1| PREDICTED: orexin receptor type 2-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350403259|ref|XP_003486747.1| PREDICTED: orexin receptor type 2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|344310426|gb|AEN03789.1| allatotropin receptor [Aedes aegypti] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
UNIPROTKB|F1MG23 444 HCRTR2 "Uncharacterized protei 0.383 0.200 0.606 6.1e-25
UNIPROTKB|O43614 444 HCRTR2 "Orexin receptor type 2 0.383 0.200 0.606 6.1e-25
UNIPROTKB|Q2MK76 444 HCRTR2 "Orexin receptor type 2 0.383 0.200 0.606 6.1e-25
MGI|MGI:2680765 460 Hcrtr2 "hypocretin (orexin) re 0.383 0.193 0.606 7.9e-25
RGD|2788 460 Hcrtr2 "hypocretin (orexin) re 0.383 0.193 0.606 7.9e-25
UNIPROTKB|Q9TUP7 444 HCRTR2 "Orexin receptor type 2 0.383 0.200 0.595 7.9e-25
UNIPROTKB|A6NMV7 389 HCRTR1 "Orexin receptor type 1 0.383 0.228 0.561 1.4e-23
ZFIN|ZDB-GENE-070228-3 424 hcrtr2 "hypocretin (orexin) re 0.383 0.209 0.561 1.8e-23
UNIPROTKB|F1NWK9 501 HCRTR2 "Uncharacterized protei 0.383 0.177 0.561 2e-23
UNIPROTKB|O43613 425 HCRTR1 "Orexin receptor type 1 0.383 0.209 0.561 2.4e-23
UNIPROTKB|F1MG23 HCRTR2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
 Score = 286 (105.7 bits), Expect = 6.1e-25, P = 6.1e-25
 Identities = 54/89 (60%), Positives = 67/89 (75%)

Query:    74 PTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLP 133
             P   EWVLIA   IVFVV LIGN LVC+AV++N  MRTVTNY+IVNL++AD LV + CLP
Sbjct:    50 PKEYEWVLIAGYIIVFVVALIGNVLVCVAVWKNHHMRTVTNYFIVNLSLADVLVTITCLP 109

Query:   134 PTVVWDVTETWFMGLVLCRVVLYSQVIFI 162
              T+V D+TETWF G  LC+V+ Y Q + +
Sbjct:   110 ATLVVDITETWFFGQSLCKVIPYLQTVSV 138
GO:0016499 "orexin receptor activity" evidence=IEA
GO:0007200 "phospholipase C-activating G-protein coupled receptor signaling pathway" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0007631 "feeding behavior" evidence=IEA
UNIPROTKB|O43614 HCRTR2 "Orexin receptor type 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q2MK76 HCRTR2 "Orexin receptor type 2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:2680765 Hcrtr2 "hypocretin (orexin) receptor 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2788 Hcrtr2 "hypocretin (orexin) receptor 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9TUP7 HCRTR2 "Orexin receptor type 2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A6NMV7 HCRTR1 "Orexin receptor type 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-070228-3 hcrtr2 "hypocretin (orexin) receptor 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NWK9 HCRTR2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O43613 HCRTR1 "Orexin receptor type 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P56719OX2R_RATNo assigned EC number0.57840.43100.2173yesN/A
P58308OX2R_MOUSENo assigned EC number0.57840.43100.2173yesN/A
O43614OX2R_HUMANNo assigned EC number0.57840.43100.2252yesN/A
Q9TUP7OX2R_CANFANo assigned EC number0.56860.43100.2252yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
pfam00001 251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 3e-15
PHA03087 335 PHA03087, PHA03087, G protein-coupled chemokine re 4e-06
PHA02638 417 PHA02638, PHA02638, CC chemokine receptor-like pro 9e-06
PHA02834 323 PHA02834, PHA02834, chemokine receptor-like protei 0.004
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information 
 Score = 72.3 bits (178), Expect = 3e-15
 Identities = 22/61 (36%), Positives = 35/61 (57%)

Query: 101 IAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVI 160
           + + R K +RT TN +++NLAVAD L +L   P  + + V   W  G  LC++V +  V+
Sbjct: 1   LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWALYYLVGGDWPFGDALCKLVGFLFVV 60

Query: 161 F 161
            
Sbjct: 61  N 61

This family contains, amongst other G-protein-coupled receptors (GCPRs), members of the opsin family, which have been considered to be typical members of the rhodopsin superfamily. They share several motifs, mainly the seven transmembrane helices, GCPRs of the rhodopsin superfamily. All opsins bind a chromophore, such as 11-cis-retinal. The function of most opsins other than the photoisomerases is split into two steps: light absorption and G-protein activation. Photoisomerases, on the other hand, are not coupled to G-proteins - they are thought to generate and supply the chromophore that is used by visual opsins. Length = 251
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|165177 PHA02834, PHA02834, chemokine receptor-like protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 232
KOG4219|consensus 423 99.91
PHA03234 338 DNA packaging protein UL33; Provisional 99.88
KOG4220|consensus 503 99.87
PHA02834 323 chemokine receptor-like protein; Provisional 99.85
PHA02638 417 CC chemokine receptor-like protein; Provisional 99.84
PHA03087 335 G protein-coupled chemokine receptor-like protein; 99.82
PHA03235 409 DNA packaging protein UL33; Provisional 99.81
PF00001 257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.77
KOG2087|consensus 363 99.46
PF10320 257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.26
PF10328 274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 98.81
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.44
PF10324 318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 98.38
PF05462 303 Dicty_CAR: Slime mold cyclic AMP receptor 97.9
PF10321 313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 97.57
PF10316 273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.54
PF10323 283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 97.19
PF05296 303 TAS2R: Mammalian taste receptor protein (TAS2R); I 97.08
PF10292 324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 96.83
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 95.37
PF10317 292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 95.23
PF03402 265 V1R: Vomeronasal organ pheromone receptor family, 94.95
PF02118 275 Srg: Srg family chemoreceptor; InterPro: IPR000609 92.81
PF10326 307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 91.62
PF02117 328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 91.56
PF06681226 DUF1182: Protein of unknown function (DUF1182); In 86.1
>KOG4219|consensus Back     alignment and domain information 
Probab=99.91  E-value=1.8e-24  Score=183.75  Aligned_cols=135  Identities=22%  Similarity=0.387  Sum_probs=116.3

Q ss_pred             hcCCCchhHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCCcchhhHHHHHHHHHHHHHhhhhhHHHHHhhccceeccccc
Q psy2912          71 YVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVL  150 (232)
Q Consensus        71 ~~~~~~~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~l~~~~~~~i~nLa~aDll~~l~~~p~~i~~~~~~~w~~~~~~  150 (232)
                      ...+.+.+.+..++|+++.+++++||++|++++..+|++|+.+|+|++|||+||++++++..|+...+.....|.+|.+.
T Consensus        28 f~lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~~W~~G~f~  107 (423)
T KOG4219|consen   28 FVLPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQEWYFGSFY  107 (423)
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccccce
Confidence            34566777899999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             cchhhHHHH---------HHHHHHHHHHHHHhccccccccceeeeeeeehhHHHHHHHHHHHhhccccc
Q psy2912         151 CRVVLYSQV---------IFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSS  210 (232)
Q Consensus       151 C~~~~~~~~---------~~~iaidRy~aI~~P~~~~~~~~~~~~~~~~~~~~~iw~~~~~~~~~p~~~  210 (232)
                      |++..|+..         +.+||+|||.||+||++.+..+  ++.   .+++..+|+++.++++|..+.
T Consensus       108 C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r~s~--r~s---k~iIllIW~lA~l~a~P~~l~  171 (423)
T KOG4219|consen  108 CRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPRPSR--RSS---KIIILLIWALALLLALPQLLY  171 (423)
T ss_pred             eeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccCCCC--cce---eehhHHHHHHHHHHhccceee
Confidence            999998764         4599999999999999866433  222   333447898998999886654

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
4djh_A 480 Structure Of The Human Kappa Opioid Receptor In Com 1e-10
3oe6_A 508 Crystal Structure Of The Cxcr4 Chemokine Receptor I 2e-09
3odu_A 502 The 2.5 A Structure Of The Cxcr4 Chemokine Receptor 3e-09
3oe0_A 499 Crystal Structure Of The Cxcr4 Chemokine Receptor I 3e-09
4dkl_A 464 Crystal Structure Of The Mu-Opioid Receptor Bound T 7e-09
4ej4_A 461 Structure Of The Delta Opioid Receptor Bound To Nal 2e-08
4ea3_B 434 Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WI 5e-07
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 6e-07
3pwh_A 329 Thermostabilised Adenosine A2a Receptor Length = 32 2e-06
3eml_A 488 The 2.6 A Crystal Structure Of A Human A2a Adenosin 2e-06
4eiy_A 447 Crystal Structure Of The Chimeric Protein Of A2aar- 3e-06
3vg9_A 326 Crystal Structure Of Human Adenosine A2a Receptor W 7e-06
2ydo_A 325 Thermostabilised Human A2a Receptor With Adenosine 7e-06
3sn6_R 514 Crystal Structure Of The Beta2 Adrenergic Receptor- 4e-05
3rze_A 452 Structure Of The Human Histamine H1 Receptor In Com 7e-05
4daj_A 479 Structure Of The M3 Muscarinic Acetylcholine Recept 1e-04
4gbr_A 309 N-terminal T4 Lysozyme Fusion Facilitates Crystalli 1e-04
2y00_B 315 Turkey Beta1 Adrenergic Receptor With Stabilising M 3e-04
2vt4_A 313 Turkey Beta1 Adrenergic Receptor With Stabilising M 4e-04
3uon_A 467 Structure Of The Human M2 Muscarinic Acetylcholine 4e-04
3p0g_A 501 Structure Of A Nanobody-Stabilized Active State Of 9e-04
2rh1_A 500 High Resolution Crystal Structure Of Human B2-Adren 9e-04
>pdb|4DJH|A Chain A, Structure Of The Human Kappa Opioid Receptor In Complex With Jdtic Length = 480 Back     alignment and structure 
Iteration: 1

 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 61/107 (57%), Gaps = 12/107 (11%)
Query: 80  VLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWD 139
           ++ A+ S+VFVVGL+GN+LV   + R   M+T TN YI NLA+AD LV       + V+ 
Sbjct: 24  IITAVYSVVFVVGLVGNSLVMFVIIRYTKMKTATNIYIFNLALADALVTTTMPFQSTVY- 82
Query: 140 VTETWFMGLVLCRVVLYSQVIFIMYLDYYN---TMIKLTNRKQSKYI 183
           +  +W  G VLC++VL         +DYYN   ++  LT     +YI
Sbjct: 83  LMNSWPFGDVLCKIVL--------SIDYYNMFTSIFTLTMMSVDRYI 121
>pdb|3OE6|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Small Molecule Antagonist It1t In I222 Spacegroup Length = 508 Back     alignment and structure
>pdb|3ODU|A Chain A, The 2.5 A Structure Of The Cxcr4 Chemokine Receptor In Complex With Small Molecule Antagonist It1t Length = 502 Back     alignment and structure
>pdb|3OE0|A Chain A, Crystal Structure Of The Cxcr4 Chemokine Receptor In Complex With A Cyclic Peptide Antagonist Cvx15 Length = 499 Back     alignment and structure
>pdb|4DKL|A Chain A, Crystal Structure Of The Mu-Opioid Receptor Bound To A Morphinan Antagonist Length = 464 Back     alignment and structure
>pdb|4EJ4|A Chain A, Structure Of The Delta Opioid Receptor Bound To Naltrindole Length = 461 Back     alignment and structure
>pdb|4EA3|B Chain B, Structure Of The NOFQ OPIOID RECEPTOR IN COMPLEX WITH A PEPTIDE Mimetic Length = 434 Back     alignment and structure
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure
>pdb|3PWH|A Chain A, Thermostabilised Adenosine A2a Receptor Length = 329 Back     alignment and structure
>pdb|3EML|A Chain A, The 2.6 A Crystal Structure Of A Human A2a Adenosine Receptor Bound To Zm241385. Length = 488 Back     alignment and structure
>pdb|4EIY|A Chain A, Crystal Structure Of The Chimeric Protein Of A2aar-Bril In Complex With Zm241385 At 1.8a Resolution Length = 447 Back     alignment and structure
>pdb|3VG9|A Chain A, Crystal Structure Of Human Adenosine A2a Receptor With An Allosteric Inverse-Agonist Antibody At 2.7 A Resolution Length = 326 Back     alignment and structure
>pdb|2YDO|A Chain A, Thermostabilised Human A2a Receptor With Adenosine Bound Length = 325 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|3RZE|A Chain A, Structure Of The Human Histamine H1 Receptor In Complex With Doxepin Length = 452 Back     alignment and structure
>pdb|4DAJ|A Chain A, Structure Of The M3 Muscarinic Acetylcholine Receptor Length = 479 Back     alignment and structure
>pdb|4GBR|A Chain A, N-terminal T4 Lysozyme Fusion Facilitates Crystallization Of A G Protein Coupled Receptor Length = 309 Back     alignment and structure
>pdb|2Y00|B Chain B, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Partial Agonist Dobutamine (Crystal Dob92) Length = 315 Back     alignment and structure
>pdb|2VT4|A Chain A, Turkey Beta1 Adrenergic Receptor With Stabilising Mutations And Bound Cyanopindolol Length = 313 Back     alignment and structure
>pdb|3UON|A Chain A, Structure Of The Human M2 Muscarinic Acetylcholine Receptor Bound To An Antagonist Length = 467 Back     alignment and structure
>pdb|3P0G|A Chain A, Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor Length = 501 Back     alignment and structure
>pdb|2RH1|A Chain A, High Resolution Crystal Structure Of Human B2-Adrenergic G Protein- Coupled Receptor Length = 500 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 5e-32
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 9e-31
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 5e-25
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 1e-23
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 1e-22
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 2e-22
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 4e-22
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 8e-22
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 3e-21
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 4e-21
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 5e-20
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 8e-20
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 7e-19
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 3e-17
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 7e-17
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
 Score =  118 bits (298), Expect = 5e-32
 Identities = 25/91 (27%), Positives = 46/91 (50%)

Query: 70  EYVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVIL 129
           ++V+P     +  A  +++ V  ++GN +V   +  +K MRTVTNY++VNLA A+  +  
Sbjct: 24  QFVQPAWQIVLWAAAYTVIVVTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAA 83

Query: 130 ICLPPTVVWDVTETWFMGLVLCRVVLYSQVI 160
                   + V   W+ GL  C+   +  + 
Sbjct: 84  FNTVVNFTYAVHNEWYYGLFYCKFHNFFPIA 114
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 99.92
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.91
1u19_A 349 Rhodopsin; G protein-coupled receptor, membrane pr 99.91
2lnl_A 296 C-X-C chemokine receptor type 1; G protein coupled 99.91
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.9
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.9
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.89
2ks9_A 364 Substance-P receptor; water, autodock, NK1, neurop 99.89
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.88
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.88
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.88
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.87
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.87
4ea3_A 434 Fusion protein of nociceptin receptor and cytochr; 99.87
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.87
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.87
4amj_A 315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.86
3sn6_R 514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.85
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.3
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.92
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=99.92  E-value=2.6e-25  Score=200.27  Aligned_cols=134  Identities=18%  Similarity=0.269  Sum_probs=111.5

Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhhhhhccCCCC---cchhhHHHHHHHHHHHHHhhhhhHHHHHhhc--cceecccccc
Q psy2912          77 SEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMR---TVTNYYIVNLAVADFLVILICLPPTVVWDVT--ETWFMGLVLC  151 (232)
Q Consensus        77 ~~~~~~~~~~~i~~~gi~gN~lvi~~~~~~~~l~---~~~~~~i~nLa~aDll~~l~~~p~~i~~~~~--~~w~~~~~~C  151 (232)
                      .++++.++|.+++++|++||++|++++.++|++|   +++|+|++|||++|++++++.+|+.+.....  +.|.+|+.+|
T Consensus        31 ~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~~~~~~w~~g~~~C  110 (510)
T 4grv_A           31 SKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFIWVHHPWAFGDAGC  110 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSSCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEhhHHHH
Confidence            4577888999999999999999999998876544   6889999999999999999999998887654  5799999999


Q ss_pred             chhhHHHH---------HHHHHHHHHHHHHhccccccccceeeeeeeehhHHHHHHHHHHHhhccccceee
Q psy2912         152 RVVLYSQV---------IFIMYLDYYNTMIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYYM  213 (232)
Q Consensus       152 ~~~~~~~~---------~~~iaidRy~aI~~P~~~~~~~~~~~~~~~~~~~~~iw~~~~~~~~~p~~~~~~  213 (232)
                      ++..++..         +++||+|||+||++|++|+..+++   +.+..++.++|++++++++|++++|..
T Consensus       111 ~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~---~~~~~~i~~~W~~s~~~~~p~~~~~~~  178 (510)
T 4grv_A          111 RGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSR---SRTKKFISAIWLASALLAIPMLFTMGL  178 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCC---SCCHHHHHHHHHHHHHHHTTHHHHEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccc---cccceeehHHHHHHHHHHHHHHHhhcc
Confidence            99988764         348999999999999998877644   344666778899999999999988643
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 232
d1u19a_ 348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 1e-15
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.7 bits (177), Expect = 1e-15
 Identities = 20/86 (23%), Positives = 38/86 (44%)

Query: 71  YVKPTSSEWVLIALQSIVFVVGLIGNALVCIAVYRNKSMRTVTNYYIVNLAVADFLVILI 130
           Y+       +L A   ++ ++G   N L      ++K +RT  NY ++NLAVAD  ++  
Sbjct: 30  YLAEPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFG 89

Query: 131 CLPPTVVWDVTETWFMGLVLCRVVLY 156
               T+   +   +  G   C +  +
Sbjct: 90  GFTTTLYTSLHGYFVFGPTGCNLEGF 115

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query232
d1u19a_ 348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.87
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.87  E-value=2.4e-22  Score=169.06  Aligned_cols=167  Identities=16%  Similarity=0.194  Sum_probs=129.4

Q ss_pred             ccCCCCCccccccCCCCcccCCCCCCCcchhhcccCCCchhhhhhhhhhhhhcCCCchhHHHHHHHHHHHHHHhhhhhhh
Q psy2912          20 TTETDSNHTMNVTNSTGIFEGNSTENDTDACMQIKNMTCEEYEDYIDEIIEYVKPTSSEWVLIALQSIVFVVGLIGNALV   99 (232)
Q Consensus        20 ~~~~~~~~~~~~~n~s~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gi~gN~lv   99 (232)
                      +++++..+..+.+|.|...+.+..++                       +.+..+++...++.+++.+++++|++||+++
T Consensus         2 ~~~~~~~~~~~~~n~t~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~ii~v~gi~gN~lv   58 (348)
T d1u19a_           2 NGTEGPNFYVPFSNKTGVVRSPFEAP-----------------------QYYLAEPWQFSMLAAYMFLLIMLGFPINFLT   58 (348)
T ss_dssp             CSEECSSCEESSCCTTSCCCCTTTSC-----------------------CTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCccccCCCCCCCcCCCCCCC-----------------------ccccccHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            45667777777777775543332211                       1133444556788899999999999999999


Q ss_pred             hhhhhccCCCCcchhhHHHHHHHHHHHHHhhhhhHHHHHhhccceeccccccchhhHHHHH---------HHHHHHHHHH
Q psy2912         100 CIAVYRNKSMRTVTNYYIVNLAVADFLVILICLPPTVVWDVTETWFMGLVLCRVVLYSQVI---------FIMYLDYYNT  170 (232)
Q Consensus       100 i~~~~~~~~l~~~~~~~i~nLa~aDll~~l~~~p~~i~~~~~~~w~~~~~~C~~~~~~~~~---------~~iaidRy~a  170 (232)
                      ++++.++|++|++.|+++.|||++|++.++...|..+.....+.|..+...|+...++...         +++++|||.+
T Consensus        59 i~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~  138 (348)
T d1u19a_          59 LYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFVFGPTGCNLEGFFATLGGEIALWSLVVLAIERYVV  138 (348)
T ss_dssp             HHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccCchhhhhhhhccccceeeecchhhhhhccccee
Confidence            9999999999999999999999999999999999998888888899999999998876542         3799999999


Q ss_pred             HHhccccccccceeeeeeeehhHHHHHHHHHHHhhccccceee
Q psy2912         171 MIKLTNRKQSKYIHKKTIGTFLCKEESFLTTGISLYPKSSYYM  213 (232)
Q Consensus       171 I~~P~~~~~~~~~~~~~~~~~~~~~iw~~~~~~~~~p~~~~~~  213 (232)
                      |++|++++... +   +.....+..+|.++.++..+|.+++..
T Consensus       139 i~~p~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (348)
T d1u19a_         139 VCKPMSNFRFG-E---NHAIMGVAFTWVMALACAAPPLVGWSR  177 (348)
T ss_dssp             HTCCSSSCCCC-H---HHHHHHHHHHHHHHHHHHSGGGTTSSC
T ss_pred             eeccccccccc-c---ccccccceeeehhhhheecccccccce
Confidence            99999876543 2   223444556677888888888887544