Psyllid ID: psy2927

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHccEEEEcccccccccccccEEEEcccccHHHHHHHHHHHHHHHccEEEEEcccccccccccccccEEccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEcHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHccEEEEEccccccccccccEEEEcccccHHHHHHHHHHHHHHHHcEEEEEcccccccccccccccEEccccEEEEEEcc
Coil and Loop (DISEMBL)
MQKVSDQISIEELDIIykiphcvplsahhkwNFDDLLEKMWEYLKLTRIytkpkgqlpdyqspvvlhtdrRSIEDFCNKLHRTIAKEFKYALVwgssvkhqpqkvgkehvlndeDVVQIVKKV
Flexible Loop (DISEMBL)
MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRiytkpkgqlpdyqspvvLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVkhqpqkvgkehvlndedvvqivkkv
Low Complexity Region (SEG)
MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV
Disordered region (IsUnstruct)
*******ISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVK************************
Disordered Region (DISOPRED)
MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV
Disordered Region (DISEMBL)
MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV
Disordered Region (DISPRO)
*QKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
P32234	368	GTP-binding protein 128up	yes	N/A	0.959	0.320	0.898	6e-60
P43690	367	Developmentally-regulated	N/A	N/A	0.951	0.318	0.786	4e-53
P32233	367	Developmentally-regulated	yes	N/A	0.951	0.318	0.786	5e-53
Q9Y295	367	Developmentally-regulated	yes	N/A	0.951	0.318	0.786	5e-53
Q3MHP5	367	Developmentally-regulated	yes	N/A	0.951	0.318	0.786	5e-53
Q54HP3	370	Developmentally-regulated	yes	N/A	0.951	0.316	0.644	1e-41
P39729	369	Ribosome-interacting GTPa	yes	N/A	0.951	0.317	0.589	3e-40
Q9UT21	366	Uncharacterized GTP-bindi	yes	N/A	0.951	0.319	0.547	4e-35
Q9LQK0	399	Developmentally regulated	no	N/A	0.951	0.293	0.487	2e-30
P55039	364	Developmentally-regulated	no	N/A	0.943	0.318	0.512	3e-30

>sp|P32234|128UP_DROME GTP-binding protein 128up OS=Drosophila melanogaster GN=128up PE=2 SV=2

 Score =  228 bits (582), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 106/118 (89%), Positives = 111/118 (94%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELD+IYKIPHCVP+SAHH WNFDDLLE MWEYL+L RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKGQLPDYNSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           LH +R SIEDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVG EHVLNDEDVVQIVKKV
Sbjct: 311 LHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVVQIVKKV 368

Deformed (Dfd) is required to activate 1.28up in maxillary segment cells.
Drosophila melanogaster (taxid: 7227)

>sp|P43690|DRG1_XENLA Developmentally-regulated GTP-binding protein 1 OS=Xenopus laevis GN=drg1 PE=2 SV=1

 Score =  206 bits (524), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 104/117 (88%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YL+L RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLQLVRIYTKPKGQLPDYTSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L     + EDFC K+H+ + KEFKYALVWGSSVKH PQKVGK+HVL DEDV+QIVKK
Sbjct: 311 LPCSHTAAEDFCTKIHKNLIKEFKYALVWGSSVKHNPQKVGKDHVLEDEDVIQIVKK 367

Critical regulator of cell growth under specific conditions. Implicated in differentiation and cell cycle arrest.

Xenopus laevis (taxid: 8355)

>sp|P32233|DRG1_MOUSE Developmentally-regulated GTP-binding protein 1 OS=Mus musculus GN=Drg1 PE=1 SV=1

 Score =  206 bits (523), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 104/117 (88%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIVKK
Sbjct: 311 LPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367

Critical regulator of cell growth under specific conditions. Implicated in differentiation and cell cycle arrest.

Mus musculus (taxid: 10090)

>sp|Q9Y295|DRG1_HUMAN Developmentally-regulated GTP-binding protein 1 OS=Homo sapiens GN=DRG1 PE=1 SV=1

 Score =  206 bits (523), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 104/117 (88%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIVKK
Sbjct: 311 LPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367

Critical regulator of cell growth under specific conditions. Implicated in differentiation and cell cycle arrest.

Homo sapiens (taxid: 9606)

>sp|Q3MHP5|DRG1_BOVIN Developmentally-regulated GTP-binding protein 1 OS=Bos taurus GN=DRG1 PE=2 SV=1

 Score =  206 bits (523), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 104/117 (88%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDYTSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIVKK
Sbjct: 311 LPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIVKK 367

Critical regulator of cell growth under specific conditions. Implicated in differentiation and cell cycle arrest.

Bos taurus (taxid: 9913)

>sp|Q54HP3|DRG1_DICDI Developmentally-regulated GTP-binding protein 1 homolog OS=Dictyostelium discoideum GN=drg1 PE=3 SV=1

 Score =  167 bits (424), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 95/118 (80%), Gaps = 1/118 (0%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           D ISIEELD++ KIPH VP+S+H +WN D LL+K+WEYLKL R+YTKPKG +PDY  PVV
Sbjct: 253 DAISIEELDLLDKIPHYVPISSHLEWNLDALLDKIWEYLKLIRVYTKPKGLIPDYNEPVV 312

Query: 66  LH-TDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           +   +  SIE FCN +H +I ++F+YALVWGSS KH PQ+ GK+HVL DED+VQIVKK
Sbjct: 313 IRGGEEASIETFCNHIHNSIIRQFRYALVWGSSAKHNPQRCGKDHVLADEDIVQIVKK 370

Dictyostelium discoideum (taxid: 44689)

>sp|P39729|RBG1_YEAST Ribosome-interacting GTPase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RBG1 PE=1 SV=1

 Score =  163 bits (413), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 95/117 (81%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           D +SIEEL+++Y+IP+ VP+S+   WN D+LL+ MW+ L L RIYTKPKGQ+PD+  PVV
Sbjct: 253 DSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVV 312

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L +DR S++DFCN++H+++  +F+ ALV+GSSVKHQPQ VG  H+L DEDVV I+KK
Sbjct: 313 LRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK 369

Involved in ribosomal function.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9UT21|YFY7_SCHPO Uncharacterized GTP-binding protein C9.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC9.07c PE=2 SV=1

 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 83/117 (70%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           D ISIEELD+I +IP+ VP+  +  WN D+L E MW+YL L R+YT+P+G  PDY  PV+
Sbjct: 250 DSISIEELDLIDRIPNAVPICGNRGWNIDELKETMWDYLNLVRVYTRPRGLEPDYSEPVI 309

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L T   ++EDFCN +H +I  +FK+A VWG SV +   +VG  HVL DEDVV IVKK
Sbjct: 310 LRTGHSTVEDFCNNIHSSIKSQFKHAYVWGKSVPYPGMRVGLSHVLLDEDVVTIVKK 366

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9LQK0|DRG1_ARATH Developmentally regulated G-protein 1 OS=Arabidopsis thaliana GN=DRG1 PE=1 SV=1

 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 58/119 (48%), Positives = 83/119 (69%), Gaps = 2/119 (1%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           D + I+++D + + P+ + +S + K N D LL +MW+ + L R+Y+KP+GQ PD+  P V
Sbjct: 249 DVVGIDDVDRLSRQPNSIVISCNLKLNLDRLLARMWDEMGLVRVYSKPQGQQPDFDEPFV 308

Query: 66  LHTDRR--SIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L +DR   ++EDFCN +HRT+ K+ KYALVWG+S +H PQ  G    L DEDVVQIVKK
Sbjct: 309 LSSDRGGCTVEDFCNHVHRTLVKDMKYALVWGTSTRHNPQNCGLSQHLEDEDVVQIVKK 367

Binds GDP and GTP, and has low GTPase activity. May interact with phosphatidic acid (PA).

Arabidopsis thaliana (taxid: 3702)

>sp|P55039|DRG2_HUMAN Developmentally-regulated GTP-binding protein 2 OS=Homo sapiens GN=DRG2 PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 60/117 (51%), Positives = 83/117 (70%), Gaps = 1/117 (0%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQIS+EE+D + + P+ V +S   K N D LLE +WEYL LT IYTK +GQ PD+   ++
Sbjct: 249 DQISMEEVDRLARKPNSVVISCGMKLNLDYLLEMLWEYLALTCIYTKKRGQRPDFTDAII 308

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L     S+E  C+++HR++A +FKYALVWG+S K+ PQ+VG  H +  EDV+QIVKK
Sbjct: 309 LRKGA-SVEHVCHRIHRSLASQFKYALVWGTSTKYSPQRVGLTHTMEHEDVIQIVKK 364

May play a role in cell proliferation, differentiation and death.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
156542821	367	PREDICTED: GTP-binding protein 128up-lik	0.959	0.321	0.898	4e-60
242023708	367	GTP-binding protein 128up, putative [Ped	0.959	0.321	0.898	3e-59
383851242	367	PREDICTED: GTP-binding protein 128up-lik	0.959	0.321	0.898	5e-59
66514467	367	PREDICTED: GTP-binding protein 128up-lik	0.959	0.321	0.889	7e-59
195431080	368	GK21337 [Drosophila willistoni] gi|19415	0.959	0.320	0.898	7e-59
195123593	368	GI20960 [Drosophila mojavensis] gi|19391	0.959	0.320	0.906	1e-58
194753347	368	GF12286 [Drosophila ananassae] gi|190620	0.959	0.320	0.898	2e-58
307190203	367	GTP-binding protein 128up [Camponotus fl	0.959	0.321	0.872	2e-58
350418368	367	PREDICTED: GTP-binding protein 128up-lik	0.959	0.321	0.881	2e-58
311343	368	GTP-binding protein [Drosophila melanoga	0.959	0.320	0.898	2e-58

>gi|156542821|ref|XP_001607996.1| PREDICTED: GTP-binding protein 128up-like [Nasonia vitripennis]

 Score =  234 bits (598), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 106/118 (89%), Positives = 115/118 (97%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELD+IYKIPHCVP+SAHHKWNFDDLLEKMWEYL+L RIYTKPKGQLPDY SPVV
Sbjct: 250 DQISIEELDVIYKIPHCVPISAHHKWNFDDLLEKMWEYLQLIRIYTKPKGQLPDYNSPVV 309

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           L+T++RS+EDFCNKLHRTIAKEFKYALVWGSSVKH PQKVGK+H+LNDEDVVQIVKKV
Sbjct: 310 LNTEKRSVEDFCNKLHRTIAKEFKYALVWGSSVKHMPQKVGKDHILNDEDVVQIVKKV 367

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242023708|ref|XP_002432273.1| GTP-binding protein 128up, putative [Pediculus humanus corporis] gi|212517682|gb|EEB19535.1| GTP-binding protein 128up, putative [Pediculus humanus corporis]

 Score =  231 bits (590), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 106/118 (89%), Positives = 114/118 (96%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELDIIYKIPH VP+SAHHKWNFDDLLEKMWEYLKL RIYTKPKGQLPDY SPVV
Sbjct: 250 DQISIEELDIIYKIPHTVPISAHHKWNFDDLLEKMWEYLKLIRIYTKPKGQLPDYNSPVV 309

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           LH ++RS+EDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVG++H+LNDEDVVQIVKKV
Sbjct: 310 LHCEKRSVEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGRDHILNDEDVVQIVKKV 367

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383851242|ref|XP_003701143.1| PREDICTED: GTP-binding protein 128up-like [Megachile rotundata]

 Score =  231 bits (589), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 106/118 (89%), Positives = 114/118 (96%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELDIIYKIPHCVP+SAHHKWNFDDLLEKMWEYL+L RIYTKPKGQLPDY SPVV
Sbjct: 250 DQISIEELDIIYKIPHCVPISAHHKWNFDDLLEKMWEYLQLVRIYTKPKGQLPDYNSPVV 309

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           L+ +RR++EDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVGK+HVL DEDVVQIVKKV
Sbjct: 310 LNRERRTVEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGKDHVLCDEDVVQIVKKV 367

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66514467|ref|XP_394753.2| PREDICTED: GTP-binding protein 128up-like isoform 1 [Apis mellifera] gi|380020421|ref|XP_003694084.1| PREDICTED: GTP-binding protein 128up-like [Apis florea]

 Score =  230 bits (587), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 105/118 (88%), Positives = 114/118 (96%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELDIIYKIPHCVP+SAHHKWNFDDLLEKMWEYL+L RIYTKPKGQLPDY SPVV
Sbjct: 250 DQISIEELDIIYKIPHCVPISAHHKWNFDDLLEKMWEYLQLVRIYTKPKGQLPDYNSPVV 309

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           L+ +RR++EDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVGK+H+L DEDVVQIVKKV
Sbjct: 310 LNRERRTVEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGKDHILCDEDVVQIVKKV 367

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195431080|ref|XP_002063576.1| GK21337 [Drosophila willistoni] gi|194159661|gb|EDW74562.1| GK21337 [Drosophila willistoni]

 Score =  230 bits (587), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 106/118 (89%), Positives = 111/118 (94%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELD+IYKIPHCVP+SAHH WNFDDLLE MWEYLKL RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDVIYKIPHCVPISAHHHWNFDDLLEMMWEYLKLVRIYTKPKGQLPDYSSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           LH +R SIEDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVG EH+LNDEDVVQIVKKV
Sbjct: 311 LHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHILNDEDVVQIVKKV 368

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195123593|ref|XP_002006288.1| GI20960 [Drosophila mojavensis] gi|193911356|gb|EDW10223.1| GI20960 [Drosophila mojavensis]

 Score =  230 bits (586), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/118 (90%), Positives = 111/118 (94%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELD+IYKIPHCVP+SAHH WNFDDLLE MWEYLKL RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLKLVRIYTKPKGQLPDYNSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           LH +R SIEDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVG EHVLNDEDVVQIVKKV
Sbjct: 311 LHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVVQIVKKV 368

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194753347|ref|XP_001958975.1| GF12286 [Drosophila ananassae] gi|190620273|gb|EDV35797.1| GF12286 [Drosophila ananassae]

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/118 (89%), Positives = 111/118 (94%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELD+IYKIPHCVP+SAHH WNFDDLLE MWEYL+L RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLVRIYTKPKGQLPDYNSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           LH +R SIEDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVG EHVLNDEDVVQIVKKV
Sbjct: 311 LHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVVQIVKKV 368

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307190203|gb|EFN74318.1| GTP-binding protein 128up [Camponotus floridanus]

 Score =  229 bits (584), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 103/118 (87%), Positives = 115/118 (97%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELD+IYKIPHCVP+SAHHKWNFDDLLEKMW+YL+L RIYTKPKGQLPDY +PVV
Sbjct: 250 DQISIEELDVIYKIPHCVPISAHHKWNFDDLLEKMWDYLQLVRIYTKPKGQLPDYNAPVV 309

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           L+T+RR++EDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVGK+H+L DEDVVQIVKKV
Sbjct: 310 LNTERRTVEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGKDHLLCDEDVVQIVKKV 367

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418368|ref|XP_003491838.1| PREDICTED: GTP-binding protein 128up-like [Bombus impatiens]

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 104/118 (88%), Positives = 114/118 (96%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELDIIYKIPHCVP+SAHHKWNFDDLLEKMWEYL+L RIYTKPKGQLPDY SPVV
Sbjct: 250 DQISIEELDIIYKIPHCVPISAHHKWNFDDLLEKMWEYLQLVRIYTKPKGQLPDYNSPVV 309

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           L+ ++R++EDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVGK+H+L DEDVVQIVKKV
Sbjct: 310 LNREKRTVEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGKDHILCDEDVVQIVKKV 367

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|311343|emb|CAA50701.1| GTP-binding protein [Drosophila melanogaster]

 Score =  229 bits (583), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 106/118 (89%), Positives = 111/118 (94%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           DQISIEELD+IYKIPHCVP+SAHH WNFDDLLE MWEYL+L RIYTKPKGQLPDY SPVV
Sbjct: 251 DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKGQLPDYNSPVV 310

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKKV 123
           LH +R SIEDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVG EHVLNDEDVVQIVKKV
Sbjct: 311 LHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVVQIVKKV 368

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
FB|FBgn0010339	368	128up "upstream of RpIII128" [	0.991	0.331	0.869	2e-56
UNIPROTKB|G3N2L0	358	G3N2L0 "Uncharacterized protei	0.983	0.337	0.762	8.3e-51
UNIPROTKB|Q3MHP5	367	DRG1 "Developmentally-regulate	0.983	0.329	0.762	1.1e-50
UNIPROTKB|J9JHE3	359	DRG1 "Uncharacterized protein"	0.983	0.337	0.762	1.1e-50
UNIPROTKB|J9P0A6	367	DRG1 "Uncharacterized protein"	0.983	0.329	0.762	1.1e-50
UNIPROTKB|Q9Y295	367	DRG1 "Developmentally-regulate	0.983	0.329	0.762	1.1e-50
UNIPROTKB|F1RPB7	358	DRG1 "Uncharacterized protein"	0.983	0.337	0.762	1.1e-50
MGI|MGI:1343297	367	Drg1 "developmentally regulate	0.983	0.329	0.762	1.1e-50
RGD|1304993	367	Drg1 "developmentally regulate	0.983	0.329	0.762	1.1e-50
ZFIN|ZDB-GENE-030131-8767	366	drg1 "developmentally regulate	0.983	0.330	0.745	1.7e-50

FB|FBgn0010339 128up "upstream of RpIII128" [Drosophila melanogaster (taxid:7227)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 107/123 (86%), Positives = 114/123 (92%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELD+IYKIPHCVP+SAHH WNFDDLLE MWEYL+L RIYTKPKGQLPDY
Sbjct:   247 LNKI-DQISIEELDVIYKIPHCVPISAHHHWNFDDLLELMWEYLRLQRIYTKPKGQLPDY 305

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVLH +R SIEDFCNKLHR+IAKEFKYALVWGSSVKHQPQKVG EHVLNDEDVVQIV
Sbjct:   306 NSPVVLHNERTSIEDFCNKLHRSIAKEFKYALVWGSSVKHQPQKVGIEHVLNDEDVVQIV 365

Query:   121 KKV 123
             KKV
Sbjct:   366 KKV 368

GO:0005525 "GTP binding" evidence=ISS;NAS;IDA

UNIPROTKB|G3N2L0 G3N2L0 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY
Sbjct:   238 LNKI-DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDY 296

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIV
Sbjct:   297 MSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHSPQKVGKDHTLEDEDVIQIV 356

Query:   121 KK 122
             KK
Sbjct:   357 KK 358

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q3MHP5 DRG1 "Developmentally-regulated GTP-binding protein 1" [Bos taurus (taxid:9913)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY
Sbjct:   247 LNKI-DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDY 305

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIV
Sbjct:   306 TSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 365

Query:   121 KK 122
             KK
Sbjct:   366 KK 367

GO:0005737 "cytoplasm" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|J9JHE3 DRG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY
Sbjct:   239 LNKI-DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDY 297

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIV
Sbjct:   298 TSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 357

Query:   121 KK 122
             KK
Sbjct:   358 KK 359

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|J9P0A6 DRG1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY
Sbjct:   247 LNKI-DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDY 305

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIV
Sbjct:   306 TSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 365

Query:   121 KK 122
             KK
Sbjct:   366 KK 367

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q9Y295 DRG1 "Developmentally-regulated GTP-binding protein 1" [Homo sapiens (taxid:9606)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY
Sbjct:   247 LNKI-DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDY 305

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIV
Sbjct:   306 TSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 365

Query:   121 KK 122
             KK
Sbjct:   366 KK 367

GO:0005525 "GTP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005844 "polysome" evidence=IDA

GO:0006351 "transcription, DNA-dependent" evidence=TAS

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0008134 "transcription factor binding" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|F1RPB7 DRG1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY
Sbjct:   238 LNKI-DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDY 296

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIV
Sbjct:   297 TSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 356

Query:   121 KK 122
             KK
Sbjct:   357 KK 358

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

MGI|MGI:1343297 Drg1 "developmentally regulated GTP binding protein 1" [Mus musculus (taxid:10090)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY
Sbjct:   247 LNKI-DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDY 305

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIV
Sbjct:   306 TSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 365

Query:   121 KK 122
             KK
Sbjct:   366 KK 367

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005844 "polysome" evidence=ISO

RGD|1304993 Drg1 "developmentally regulated GTP binding protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 527 (190.6 bits), Expect = 1.1e-50, P = 1.1e-50
 Identities = 93/122 (76%), Positives = 107/122 (87%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELDIIYK+PHCVP+SAHH+WNFDDLLEK+W+YLKL RIYTKPKGQLPDY
Sbjct:   247 LNKI-DQISIEELDIIYKVPHCVPISAHHRWNFDDLLEKIWDYLKLVRIYTKPKGQLPDY 305

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH PQKVGK+H L DEDV+QIV
Sbjct:   306 TSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQIV 365

Query:   121 KK 122
             KK
Sbjct:   366 KK 367

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005844 "polysome" evidence=ISO

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

ZFIN|ZDB-GENE-030131-8767 drg1 "developmentally regulated GTP binding protein 1" [Danio rerio (taxid:7955)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 91/122 (74%), Positives = 109/122 (89%)

Query:     1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDY 60
             + K+ DQISIEELD+IYKIPHCVP+SAHH+WNFDDLLEK+W+YL+L RIYTKPKGQLPDY
Sbjct:   246 LNKI-DQISIEELDVIYKIPHCVPISAHHRWNFDDLLEKIWDYLQLVRIYTKPKGQLPDY 304

Query:    61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV 120
              +PVVL   R ++EDFC K+H+ + KEFKYALVWGSSVKH PQKVGK+HV+ DEDV+Q+V
Sbjct:   305 TAPVVLPDGRTAVEDFCLKIHKNLIKEFKYALVWGSSVKHNPQKVGKDHVMEDEDVIQLV 364

Query:   121 KK 122
             KK
Sbjct:   365 KK 366

GO:0005525 "GTP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3MHP5	DRG1_BOVIN	No assigned EC number	0.7863	0.9512	0.3188	yes	N/A
P39729	RBG1_YEAST	No assigned EC number	0.5897	0.9512	0.3170	yes	N/A
Q54HP3	DRG1_DICDI	No assigned EC number	0.6440	0.9512	0.3162	yes	N/A
Q9UT21	YFY7_SCHPO	No assigned EC number	0.5470	0.9512	0.3196	yes	N/A
Q9Y295	DRG1_HUMAN	No assigned EC number	0.7863	0.9512	0.3188	yes	N/A
P32233	DRG1_MOUSE	No assigned EC number	0.7863	0.9512	0.3188	yes	N/A
P32234	128UP_DROME	No assigned EC number	0.8983	0.9593	0.3206	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
COG1163	365	COG1163, DRG, Predicted GTPase [General function p	4e-52
cd01666	75	cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentall	2e-42
cd01896	233	cd01896, DRG, Developmentally Regulated GTP-bindin	1e-21
pfam02824	60	pfam02824, TGS, TGS domain	4e-17
cd01616	60	cd01616, TGS, The TGS domain, named after the ThrR	4e-09
cd04938	76	cd04938, TGS_Obg-like, TGS_Obg-like: The C-termina	2e-08

>gnl|CDD|224085 COG1163, DRG, Predicted GTPase [General function prediction only]

 Score =  167 bits (425), Expect = 4e-52
 Identities = 53/117 (45%), Positives = 78/117 (66%), Gaps = 1/117 (0%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           D   +EEL+ + + P+ VP+SA    N D+L E++W+ L L R+YTKP G+ PD+  P++
Sbjct: 250 DLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLI 309

Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L     ++ D C K+HR + + F+YA VWG SVKH  Q+VG +HVL DED+V+I  K
Sbjct: 310 LRRGS-TVGDVCRKIHRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHAK 365

Length = 365

>gnl|CDD|133436 cd01666, TGS_DRG_C, TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2

 Score =  133 bits (338), Expect = 2e-42
 Identities = 50/76 (65%), Positives = 61/76 (80%), Gaps = 1/76 (1%)

Query: 46  LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKV 105
           L R+YTKPKGQ PD+  PV+L     ++ED CNK+H+ + K+FKYALVWGSSVKH PQ+V
Sbjct: 1   LIRVYTKPKGQEPDFDEPVIL-RRGSTVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRV 59

Query: 106 GKEHVLNDEDVVQIVK 121
           G +HVL DEDVVQIVK
Sbjct: 60  GLDHVLEDEDVVQIVK 75

DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 75

>gnl|CDD|206683 cd01896, DRG, Developmentally Regulated GTP-binding protein (DRG)

 Score = 85.3 bits (212), Expect = 1e-21
 Identities = 27/47 (57%), Positives = 35/47 (74%)

Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTK 52
           D ISIEELD + +IP+ V +SA    N D+LLE++W+YL L RIYTK
Sbjct: 187 DLISIEELDRLARIPNSVVISAEKDLNLDELLERIWDYLGLIRIYTK 233

The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding. Length = 233

>gnl|CDD|217243 pfam02824, TGS, TGS domain

 Score = 69.4 bits (171), Expect = 4e-17
 Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 15/74 (20%)

Query: 48  RIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK 107
           R+YT P G++P+            + EDF   +H  + K+F  A V G       Q+VG 
Sbjct: 2   RVYT-PDGKVPELPRG-------STPEDFAYAIHTDLGKKFIGAKVNG-------QRVGL 46

Query: 108 EHVLNDEDVVQIVK 121
           +HVL D DVV+IV 
Sbjct: 47  DHVLEDGDVVEIVT 60

The TGS domain is named after ThrRS, GTPase, and SpoT. Interestingly, TGS domain was detected also at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 60

>gnl|CDD|133435 cd01616, TGS, The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin

 Score = 48.9 bits (117), Expect = 4e-09
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 15/74 (20%)

Query: 48  RIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK 107
            I+T          S V L     +  DF  K+H  + K F  ALV G       Q V  
Sbjct: 2   IIFTPD-------GSAVEL-PKGATAMDFALKIHTDLGKGFIGALVNG-------QLVDL 46

Query: 108 EHVLNDEDVVQIVK 121
            + L D D V IV 
Sbjct: 47  SYTLQDGDTVSIVT 60

TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 60

>gnl|CDD|133441 cd04938, TGS_Obg-like, TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF

 Score = 47.4 bits (113), Expect = 2e-08
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 14/83 (16%)

Query: 46  LTRIYTKPKGQL-------PDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSV 98
           L  +Y                ++  V++     ++ D   K+H  + K F  A+      
Sbjct: 1   LIPVYPVKNIHTFTNGSGGNVFRDCVLV-KKGTTVGDVARKIHGDLEKGFIEAVGG---- 55

Query: 99  KHQPQKVGKEHVLNDEDVVQIVK 121
             + +  GK+ +L   D+++   
Sbjct: 56  --RRRLEGKDVILGKNDILKFKT 76

The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
COG1163	365	DRG Predicted GTPase [General function prediction	100.0
KOG1486|consensus	364		100.0
KOG1487|consensus	358		100.0
cd01666	75	TGS_DRG_C TGS_DRG_C: DRG (developmentally regulate	100.0
cd04938	76	TGS_Obg-like TGS_Obg-like: The C-terminal TGS doma	99.94
PRK09602	396	translation-associated GTPase; Reviewed	99.93
PTZ00258	390	GTP-binding protein; Provisional	99.92
cd01669	76	TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS doma	99.81
PRK09601	364	GTP-binding protein YchF; Reviewed	99.79
PF02824	60	TGS: TGS domain; InterPro: IPR004095 The TGS domai	99.65
PF06071	84	YchF-GTPase_C: Protein of unknown function (DUF933	99.64
cd04867	83	TGS_YchF_C TGS_YchF_C: This subfamily represents T	99.56
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	99.54
COG0012	372	Predicted GTPase, probable translation factor [Tra	99.39
KOG1491|consensus	391		99.21
PRK10872	743	relA (p)ppGpp synthetase I/GTP pyrophosphokinase;	99.17
TIGR00691	683	spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (	99.1
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.05
PRK11092	702	bifunctional (p)ppGpp synthetase II/ guanosine-3',	98.71
COG0317	701	SpoT Guanosine polyphosphate pyrophosphohydrolases	98.56
cd01616	60	TGS The TGS domain, named after the ThrRS, GTPase,	98.11
COG2262	411	HflX GTPases [General function prediction only]	97.9
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	97.52
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	97.52
PF08438	109	MMR_HSR1_C: GTPase of unknown function C-terminal;	97.49
cd01668	60	TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) prote	97.48
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	97.45
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	97.39
COG1159	298	Era GTPase [General function prediction only]	97.36
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	97.35
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	97.31
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	97.3
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	97.28
PRK04213	201	GTP-binding protein; Provisional	97.23
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	97.22
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	97.2
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	97.19
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	97.18
KOG1489|consensus	366		97.17
PRK01777	95	hypothetical protein; Validated	97.15
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.13
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	97.09
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	97.09
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	97.08
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	97.08
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	97.07
PRK15467	158	ethanolamine utilization protein EutP; Provisional	97.05
cd01881	176	Obg_like The Obg-like subfamily consists of five w	97.04
PRK00089	292	era GTPase Era; Reviewed	97.04
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.0
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	97.0
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	96.95
PRK09866	741	hypothetical protein; Provisional	96.95
PRK12297	424	obgE GTPase CgtA; Reviewed	96.95
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	96.94
KOG0462|consensus	650		96.93
KOG1487|consensus	358		96.91
PRK15494	339	era GTPase Era; Provisional	96.89
PRK12299	335	obgE GTPase CgtA; Reviewed	96.86
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.86
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	96.85
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	96.83
COG1160	444	Predicted GTPases [General function prediction onl	96.83
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	96.83
PRK12298	390	obgE GTPase CgtA; Reviewed	96.8
PRK12296	500	obgE GTPase CgtA; Reviewed	96.8
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	96.79
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	96.79
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	96.77
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.76
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	96.73
cd00881	189	GTP_translation_factor GTP translation factor fami	96.72
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	96.71
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	96.7
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	96.7
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	96.7
PRK11058	426	GTPase HflX; Provisional	96.7
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	96.7
COG0536	369	Obg Predicted GTPase [General function prediction	96.69
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	96.67
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.67
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.66
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	96.66
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	96.63
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	96.61
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	96.6
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	96.57
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	96.55
PRK12289	352	GTPase RsgA; Reviewed	96.54
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	96.54
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	96.51
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	96.49
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	96.49
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	96.48
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	96.48
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	96.48
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	96.46
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	96.46
PF03658	84	Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR00534	96.45
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	96.44
PLN00223	181	ADP-ribosylation factor; Provisional	96.42
PTZ00099	176	rab6; Provisional	96.41
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	96.41
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	96.4
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	96.4
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	96.4
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.38
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	96.38
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	96.38
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	96.37
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	96.37
COG0486	454	ThdF Predicted GTPase [General function prediction	96.36
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	96.35
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	96.35
PRK04000	411	translation initiation factor IF-2 subunit gamma;	96.35
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	96.35
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	96.33
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	96.32
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	96.31
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	96.28
PRK03003	472	GTP-binding protein Der; Reviewed	96.27
PRK03003	472	GTP-binding protein Der; Reviewed	96.27
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	96.25
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	96.24
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	96.17
PLN03118	211	Rab family protein; Provisional	96.17
PRK13768	253	GTPase; Provisional	96.16
PRK00093	435	GTP-binding protein Der; Reviewed	96.16
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	96.15
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	96.14
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	96.12
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	96.11
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	96.1
KOG1145|consensus	683		96.1
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	96.1
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	96.1
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	96.1
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	96.09
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	96.08
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	96.06
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	96.06
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	96.06
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	96.06
PRK05433	600	GTP-binding protein LepA; Provisional	96.05
PRK09563	287	rbgA GTPase YlqF; Reviewed	96.04
PRK12288	347	GTPase RsgA; Reviewed	96.03
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	95.99
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	95.98
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	95.97
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	95.95
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	95.95
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	95.94
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	95.93
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	95.91
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	95.89
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	95.89
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	95.88
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	95.85
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	95.84
PRK13796	365	GTPase YqeH; Provisional	95.83
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	95.82
smart00178	184	SAR Sar1p-like members of the Ras-family of small	95.82
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	95.81
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	95.8
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	95.78
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	95.78
PTZ00133	182	ADP-ribosylation factor; Provisional	95.76
PRK01889	356	GTPase RsgA; Reviewed	95.74
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	95.74
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	95.72
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	95.69
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	95.69
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	95.63
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	95.62
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	95.59
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	95.59
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	95.58
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	95.57
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	95.48
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	95.47
PRK00093	435	GTP-binding protein Der; Reviewed	95.46
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	95.46
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	95.45
PRK00098	298	GTPase RsgA; Reviewed	95.42
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	95.37
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	95.35
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	95.32
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	95.32
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	95.28
PLN03110	216	Rab GTPase; Provisional	95.27
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	95.27
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	95.25
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	95.25
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	95.25
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	95.23
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	95.17
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	95.17
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	95.01
PTZ00369	189	Ras-like protein; Provisional	94.93
COG1160	444	Predicted GTPases [General function prediction onl	94.89
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	94.86
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	94.78
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	94.78
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	94.76
cd01667	61	TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Syn	94.75
KOG0092|consensus	200		94.74
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	94.72
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	94.71
PRK06944	65	sulfur carrier protein ThiS; Provisional	94.63
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	94.54
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	94.53
PRK05659	66	sulfur carrier protein ThiS; Validated	94.53
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	94.48
PRK12736	394	elongation factor Tu; Reviewed	94.4
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	94.4
PLN02799	82	Molybdopterin synthase sulfur carrier subunit	94.37
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	94.36
CHL00189	742	infB translation initiation factor 2; Provisional	94.17
TIGR01683	64	thiS thiamine biosynthesis protein ThiS. This mode	94.1
PRK12317	425	elongation factor 1-alpha; Reviewed	94.09
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	94.05
COG1162	301	Predicted GTPases [General function prediction onl	94.02
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	94.0
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	93.93
COG3276	447	SelB Selenocysteine-specific translation elongatio	93.92
PF02597	77	ThiS: ThiS family; InterPro: IPR003749 ThiS (thiam	93.92
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	93.85
PLN03108	210	Rab family protein; Provisional	93.82
COG0218	200	Predicted GTPase [General function prediction only	93.71
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	93.69
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	93.68
PRK14845	1049	translation initiation factor IF-2; Provisional	93.67
cd00754	80	MoaD Ubiquitin domain of MoaD-like proteins. MoaD	93.56
PRK06437	67	hypothetical protein; Provisional	93.52
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	93.31
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	93.23
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	93.23
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	93.19
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	93.19
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	93.14
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	93.11
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	92.94
COG0050	394	TufB GTPases - translation elongation factors [Tra	92.93
PRK04004	586	translation initiation factor IF-2; Validated	92.92
PRK05306	787	infB translation initiation factor IF-2; Validated	92.69
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	92.65
KOG0466|consensus	466		92.18
TIGR00485	394	EF-Tu translation elongation factor TU. This align	92.03
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	92.01
PRK12735	396	elongation factor Tu; Reviewed	92.01
cd00565	65	ThiS ThiaminS ubiquitin-like sulfur carrier protei	91.98
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	91.94
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	91.8
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	91.74
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	91.6
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	91.1
KOG0094|consensus	221		91.03
PRK00049	396	elongation factor Tu; Reviewed	90.97
COG2914	99	Uncharacterized protein conserved in bacteria [Fun	90.78
CHL00071	409	tufA elongation factor Tu	90.4
cd01764	94	Urm1 Urm1-like ubuitin domain. Urm1 (Ubiquitin-Rel	90.35
TIGR01682	80	moaD molybdopterin converting factor, subunit 1, n	90.31
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	90.17
KOG0410|consensus	410		89.5
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	89.5
PLN00043	447	elongation factor 1-alpha; Provisional	89.49
PRK08053	66	sulfur carrier protein ThiS; Provisional	89.37
PLN03127	447	Elongation factor Tu; Provisional	89.27
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	88.91
PRK08364	70	sulfur carrier protein ThiS; Provisional	88.64
KOG0461|consensus	522		88.56
KOG1423|consensus	379		88.48
PRK10218	607	GTP-binding protein; Provisional	88.3
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	87.88
KOG0088|consensus	218		87.34
COG1084	346	Predicted GTPase [General function prediction only	87.26
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	86.94
PRK07440	70	hypothetical protein; Provisional	86.89
PRK11130	81	moaD molybdopterin synthase small subunit; Provisi	86.74
PF09138	96	Urm1: Urm1 (Ubiquitin related modifier); InterPro:	86.64
PTZ00141	446	elongation factor 1- alpha; Provisional	86.55
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	85.9
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	85.89
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	85.79
COG2104	68	ThiS Sulfur transfer protein involved in thiamine	85.77
PLN03126	478	Elongation factor Tu; Provisional	85.62
KOG1191|consensus	531		85.26
PRK06488	65	sulfur carrier protein ThiS; Validated	85.14
PRK00413	638	thrS threonyl-tRNA synthetase; Reviewed	85.01
KOG0083|consensus	192		84.34
PRK07696	67	sulfur carrier protein ThiS; Provisional	84.22
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	83.12
COG1977	84	MoaD Molybdopterin converting factor, small subuni	83.09
COG1161	322	Predicted GTPases [General function prediction onl	83.04
KOG0460|consensus	449		82.91
PF14451	81	Ub-Mut7C: Mut7-C ubiquitin	82.37
KOG0078|consensus	207		82.11
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	80.63

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=100.00  E-value=4.3e-47  Score=304.17  Aligned_cols=121  Identities=44%  Similarity=0.848  Sum_probs=117.6

Q ss_pred             CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927           1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL   80 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I   80 (123)
                      |+||+|+++.++++.+.+.+++++|||.+++|+++|++.||+.|+++|||||++|..||+++|++|++| |||+|+|++|
T Consensus       245 v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~G-sTV~Dvc~~I  323 (365)
T COG1163         245 VVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRG-STVGDVCRKI  323 (365)
T ss_pred             EEecccccCHHHHHHHHhccceEEEecccCCCHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCC-CcHHHHHHHH
Confidence            689999999999999977789999999999999999999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          81 HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        81 H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      |+||.++|+||+|||+|+||+|||||+||+|+|||||+|+.+
T Consensus       324 H~~l~~~FryA~VWGkSvk~~~QrVG~dHvLeD~DIV~I~~k  365 (365)
T COG1163         324 HRDLVENFRYARVWGKSVKHPGQRVGLDHVLEDEDIVEIHAK  365 (365)
T ss_pred             HHHHHHhcceEEEeccCCCCCccccCcCcCccCCCeEEEeeC
Confidence            999999999999999999999999999999999999999975

>KOG1486|consensus

Probab=100.00  E-value=1.6e-42  Score=271.85  Aligned_cols=121  Identities=55%  Similarity=0.944  Sum_probs=118.6

Q ss_pred             CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927           1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL   80 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I   80 (123)
                      |+||||.++.|+++++++.|+.+.||+...+||+.|+|.||+.|++.|||||++|..||+++|++++.| +|++|+|.+|
T Consensus       244 vYnKID~vs~eevdrlAr~PnsvViSC~m~lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g-~tve~~C~~i  322 (364)
T KOG1486|consen  244 VYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKG-STVEDVCHRI  322 (364)
T ss_pred             EeeccceecHHHHHHHhcCCCcEEEEeccccCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCC-CcHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999999999999999998 9999999999


Q ss_pred             HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          81 HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        81 H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      |++|+.+|+||.|||.|+||+|||||+.|.++|+|||+|+.+
T Consensus       323 Hr~l~~qfkyAlVWGtSakhsPQrvgl~h~~~dEdvvqi~~k  364 (364)
T KOG1486|consen  323 HRTLAAQFKYALVWGTSAKHSPQRVGLGHTLEDEDVVQIVKK  364 (364)
T ss_pred             HHHHHHhhceeeEeccccccCcceeccccccccccceeeecC
Confidence            999999999999999999999999999999999999999875

>KOG1487|consensus

Probab=100.00  E-value=2.7e-40  Score=259.89  Aligned_cols=122  Identities=78%  Similarity=1.288  Sum_probs=118.3

Q ss_pred             CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927           1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL   80 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I   80 (123)
                      ++||||.++.|+++-+.+.|+.+||||.++||+|+|++.+|+.|++.|+||+++|.+||++.|++++.+.+||+|+|.+|
T Consensus       237 vLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~dfc~~i  316 (358)
T KOG1487|consen  237 VLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDFCNKI  316 (358)
T ss_pred             eecccceeeeeccceeeeccceeecccccccchHHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHHHHHH
Confidence            58999999999998777889999999999999999999999999999999999999999999999999889999999999


Q ss_pred             HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          81 HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        81 H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      |+++.+.|+||.|||.|+||+|||||++|+|+|+|||+|+++
T Consensus       317 h~~~~~~fk~alvwg~s~kh~pq~vg~~h~l~dedvv~ivkk  358 (358)
T KOG1487|consen  317 HKSILKQFKYALVWGSSVKHNPQRVGKEHVLEDEDVVQIVKK  358 (358)
T ss_pred             HHHHHHhhhhheEeccccCcChhhcchhheeccchhhhhccC
Confidence            999999999999999999999999999999999999999975

>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2

Probab=100.00  E-value=5.5e-34  Score=186.56  Aligned_cols=75  Identities=67%  Similarity=1.183  Sum_probs=73.0

Q ss_pred             cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ++|||||++|+.||+.+|++||+| +||+|+|++||+|+.++|+||+|||+|++|.|||||++|+|+|||||+|++
T Consensus         1 lirvytk~~g~~~d~~~~liL~~G-aTV~D~a~~iH~di~~~f~~A~v~g~s~~~~gq~Vgl~~~L~d~DvVeI~~   75 (75)
T cd01666           1 LIRVYTKPKGQEPDFDEPVILRRG-STVEDVCNKIHKDLVKQFKYALVWGSSVKHSPQRVGLDHVLEDEDVVQIVK   75 (75)
T ss_pred             CEEEEeCCCCCCCCCCCCEEECCC-CCHHHHHHHHHHHHHHhCCeeEEeccCCcCCCeECCCCCEecCCCEEEEeC
Confidence            589999999999999999999997 999999999999999999999999999999999999999999999999985

DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF

Probab=99.94  E-value=6.1e-27  Score=153.51  Aligned_cols=69  Identities=19%  Similarity=0.317  Sum_probs=65.7

Q ss_pred             cceEEeCCCCCC-------CCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEE
Q psy2927          46 LTRIYTKPKGQL-------PDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQ  118 (123)
Q Consensus        46 ~irvytk~~g~~-------pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~  118 (123)
                      +++|||+++++.       ||+.+||+|++| +|++|+|.+||+||.++|+||+|||      +||+|++|+|+|||||+
T Consensus         1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g-~tv~d~a~~IH~d~~~~F~~A~v~~------~~~vg~d~~l~d~DVv~   73 (76)
T cd04938           1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKG-TTVGDVARKIHGDLEKGFIEAVGGR------RRLEGKDVILGKNDILK   73 (76)
T ss_pred             CEEEEEcCCCccccCcCCCCccceeEEEcCC-CCHHHHHHHHhHHHHhccEEEEEcc------CEEECCCEEecCCCEEE
Confidence            579999999987       999999999997 9999999999999999999999998      79999999999999999


Q ss_pred             EEe
Q psy2927         119 IVK  121 (123)
Q Consensus       119 i~~  121 (123)
                      |++
T Consensus        74 i~~   76 (76)
T cd04938          74 FKT   76 (76)
T ss_pred             EEC
Confidence            974

The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.93  E-value=4.8e-26  Score=187.55  Aligned_cols=116  Identities=21%  Similarity=0.332  Sum_probs=97.1

Q ss_pred             CcccCCCCC-HhhHHHHh--cCCCeEEEeecCCcChHH------------------------------------------
Q psy2927           1 MQKVSDQIS-IEELDIIY--KIPHCVPLSAHHKWNFDD------------------------------------------   35 (123)
Q Consensus         1 V~NKiD~~~-~e~l~~l~--~~~~~v~ISA~~~~gld~------------------------------------------   35 (123)
                      |+||+|+.. .+.+..+.  .+...+++||..+.++++                                          
T Consensus       223 VlNK~D~~~~~~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~  302 (396)
T PRK09602        223 AANKADLPPAEENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG  302 (396)
T ss_pred             EEEchhcccchHHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC
Confidence            689999774 33355443  345789999999998765                                          


Q ss_pred             ------HHHHHHHhhccceEEeCCCCCC------CCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCc
Q psy2927          36 ------LLEKMWEYLKLTRIYTKPKGQL------PDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQ  103 (123)
Q Consensus        36 ------L~e~i~~~L~~irvytk~~g~~------pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q  103 (123)
                            |.+++|+.|+++++||.++...      ++..+||++|+| +|+.|+|++||+||+++|+||..|+     .+|
T Consensus       303 ~~~~~~i~~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g-~t~~d~A~~IH~d~~~~fi~A~~~~-----~~~  376 (396)
T PRK09602        303 TGVQEAINTAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKG-STARDLAYKIHTDIGEGFLYAIDAR-----TKR  376 (396)
T ss_pred             chHHHHHHHHHHHHhCCEEEEecCcccccccccCcccceeEEECCC-CCHHHHHHHHHHHHHhhceehhccc-----CCc
Confidence                  4489999999999999765332      467889999998 9999999999999999999999654     689


Q ss_pred             eeCCCceecCCCeEEEEec
Q psy2927         104 KVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus       104 ~vg~~~~l~d~Dvv~i~~~  122 (123)
                      ++|++|+|+|||||+|++.
T Consensus       377 ~~g~~~~l~dgDiv~i~~~  395 (396)
T PRK09602        377 RIGEDYELKDGDVIKIVST  395 (396)
T ss_pred             ccCCCcEecCCCEEEEEeC
Confidence            9999999999999999985

>PTZ00258 GTP-binding protein; Provisional

Probab=99.92  E-value=2.7e-25  Score=182.88  Aligned_cols=115  Identities=22%  Similarity=0.267  Sum_probs=96.5

Q ss_pred             CcccC--CCC--CHhhHHHHh----cC--CCeEEEeecCCc-----------------------ChHHHHHHHHHhhccc
Q psy2927           1 MQKVS--DQI--SIEELDIIY----KI--PHCVPLSAHHKW-----------------------NFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKi--D~~--~~e~l~~l~----~~--~~~v~ISA~~~~-----------------------gld~L~e~i~~~L~~i   47 (123)
                      |+||.  |+.  ..+.++.+.    ..  ...+++||..+.                       |+++|.+.+++.|+++
T Consensus       226 v~N~~E~D~~~~~~~~~~~l~~~~~~~~~~~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li  305 (390)
T PTZ00258        226 LVNMSEKDFIRQKNKWLAKIKEWVGEKGGGPIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLI  305 (390)
T ss_pred             EEECchhhhcccchHHHHHHHHHHHhcCCCeEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCE
Confidence            57999  863  333444442    22  348999987654                       8999999999999999


Q ss_pred             eEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCC----------CCCCC--ceeCCCceecCCC
Q psy2927          48 RIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSS----------VKHQP--QKVGKEHVLNDED  115 (123)
Q Consensus        48 rvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s----------~k~~~--q~vg~~~~l~d~D  115 (123)
                      ++||.++    |..++|++++| +|+.|+|+.||+||+++|++|.||+.+          +|..|  +++|+||+|+|||
T Consensus       306 ~ffT~g~----~e~raw~i~~G-sta~~aAg~IHsD~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGD  380 (390)
T PTZ00258        306 HFFTAGP----DEVRCWTIQKG-TKAPQAAGVIHSDFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGD  380 (390)
T ss_pred             EEEcCCC----CceeEEEeCCC-CcHHHHHhhhhhHHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCC
Confidence            9999886    46789999998 999999999999999999999999865          66656  8999999999999


Q ss_pred             eEEEE
Q psy2927         116 VVQIV  120 (123)
Q Consensus       116 vv~i~  120 (123)
                      ||+|.
T Consensus       381 Ii~f~  385 (390)
T PTZ00258        381 IIFFK  385 (390)
T ss_pred             EEEEE
Confidence            99985

>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea

Probab=99.81  E-value=9.2e-20  Score=119.50  Aligned_cols=60  Identities=28%  Similarity=0.506  Sum_probs=53.3

Q ss_pred             CCCC-CCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          53 PKGQ-LPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        53 ~~g~-~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +.|+ .||   ||+||+| +|+.|+|++||+||.++|++|+++    | .+|++|++|+|+|||||+|+|
T Consensus        16 ~~~~~~~d---~~~l~~G-aTv~D~A~~IHtdi~~~f~~Ai~~----k-~~~~vg~~~~L~dgDvV~Ii~   76 (76)
T cd01669          16 KEGNVLPD---AFLLPKG-STARDLAYAIHTDIGDGFLHAIDA----R-TGRRVGEDYELKHRDVIKIVS   76 (76)
T ss_pred             CCCCCccc---eEEECCC-CCHHHHHHHHHHHHHhcceeeEEe----e-CCEEeCCCcEecCCCEEEEeC
Confidence            3343 455   9999997 999999999999999999999874    5 689999999999999999986

Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.79  E-value=1.9e-19  Score=147.23  Aligned_cols=85  Identities=20%  Similarity=0.269  Sum_probs=74.2

Q ss_pred             ChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCC
Q psy2927          32 NFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQ  101 (123)
Q Consensus        32 gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~  101 (123)
                      |++.+....++.|++|.+||.++.    ..++|++++| +|+.++|+.||+||+++|.+|.|+..          .+|-.
T Consensus       266 ~~~~ii~~~~~~L~li~fftvg~~----evrawti~~G-stA~~aAg~IHsD~~kgFI~AeVi~~~d~~~~g~~~~ak~~  340 (364)
T PRK09601        266 GLDRLIRAGYELLGLITYFTAGPK----EVRAWTIKKG-TTAPQAAGVIHTDFEKGFIRAEVISYDDLIEYGSEAGAKEA  340 (364)
T ss_pred             hHHHHHHHHHHHhCCEEEecCCCC----eEEEEEeCCC-CchHHHhhcchhhHhhccEEEEEecHHHHHHcCCHHHHHHc
Confidence            678899999999999999998866    4589999998 99999999999999999999999952          35533


Q ss_pred             C-cee-CCCceecCCCeEEEEe
Q psy2927         102 P-QKV-GKEHVLNDEDVVQIVK  121 (123)
Q Consensus       102 ~-q~v-g~~~~l~d~Dvv~i~~  121 (123)
                      | .|. |+||+|+|||||.|.-
T Consensus       341 gk~rleGkdY~v~DGDIi~f~f  362 (364)
T PRK09601        341 GKVRLEGKDYIVQDGDVMHFRF  362 (364)
T ss_pred             cceeccCCceEecCCCEEEEEc
Confidence            4 566 9999999999999864

>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []

Probab=99.65  E-value=3.7e-16  Score=97.86  Aligned_cols=60  Identities=35%  Similarity=0.492  Sum_probs=53.5

Q ss_pred             ceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          47 TRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        47 irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      |++|+ ++|.      ..-+|.| +|+.|+|+.||++++++|++|.|||       |+++++|+|+|||+|+|+|
T Consensus         1 I~v~l-pdG~------~~~~~~g-~T~~d~A~~I~~~l~~~~~~A~Vng-------~~vdl~~~L~~~d~v~iiT   60 (60)
T PF02824_consen    1 IRVYL-PDGS------IKELPEG-STVLDVAYSIHSSLAKRAVAAKVNG-------QLVDLDHPLEDGDVVEIIT   60 (60)
T ss_dssp             EEEEE-TTSC------EEEEETT-BBHHHHHHHHSHHHHHCEEEEEETT-------EEEETTSBB-SSEEEEEEE
T ss_pred             CEEEC-CCCC------eeeCCCC-CCHHHHHHHHCHHHHhheeEEEEcC-------EECCCCCCcCCCCEEEEEC
Confidence            57888 7776      4449998 9999999999999999999999977       9999999999999999986

The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....

>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes

Probab=99.64  E-value=8.1e-17  Score=107.12  Aligned_cols=70  Identities=17%  Similarity=0.235  Sum_probs=54.8

Q ss_pred             cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecC
Q psy2927          46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLND  113 (123)
Q Consensus        46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d  113 (123)
                      |+..||.++.    ..++|++++| +|++++|+.||+||+++|..|.|...          .+|-.|  ++.|+||+++|
T Consensus         1 L~tffT~G~~----EvRaWti~~G-~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqD   75 (84)
T PF06071_consen    1 LITFFTAGPK----EVRAWTIRKG-TTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQD   75 (84)
T ss_dssp             EEEEEEESSS----EEEEEEEETT--BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--T
T ss_pred             CceEEccCCC----eEEEEEccCC-CCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeC
Confidence            4678998855    6889999998 99999999999999999999999842          133334  68999999999


Q ss_pred             CCeEEEE
Q psy2927         114 EDVVQIV  120 (123)
Q Consensus       114 ~Dvv~i~  120 (123)
                      |||+.+.
T Consensus        76 GDIi~f~   82 (84)
T PF06071_consen   76 GDIIHFR   82 (84)
T ss_dssp             TEEEEEE
T ss_pred             CCEEEEE
Confidence            9999985

While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.

>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown

Probab=99.56  E-value=9.4e-16  Score=101.65  Aligned_cols=70  Identities=19%  Similarity=0.233  Sum_probs=58.9

Q ss_pred             cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecC
Q psy2927          46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLND  113 (123)
Q Consensus        46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d  113 (123)
                      ++.+||.++.    ..++|++++| +|++++|..||+||+++|..|.|...          .+|-.|  +..|++|+++|
T Consensus         1 L~tffT~G~~----EvRAWti~~g-~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~D   75 (83)
T cd04867           1 LISFFTAGPD----EVRAWTIRKG-TKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQD   75 (83)
T ss_pred             CccEECCCCC----eEEEEEccCC-CChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeC
Confidence            4678897654    6889999998 99999999999999999999999842          144344  77999999999


Q ss_pred             CCeEEEE
Q psy2927         114 EDVVQIV  120 (123)
Q Consensus       114 ~Dvv~i~  120 (123)
                      |||+.+.
T Consensus        76 GDi~~f~   82 (83)
T cd04867          76 GDIIFFK   82 (83)
T ss_pred             CeEEEEE
Confidence            9999873

The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>TIGR00092 GTP-binding protein YchF

Probab=99.54  E-value=3.2e-15  Score=122.54  Aligned_cols=85  Identities=18%  Similarity=0.156  Sum_probs=74.0

Q ss_pred             ChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCC
Q psy2927          32 NFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQ  101 (123)
Q Consensus        32 gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~  101 (123)
                      +++.|....++.|+++.+||.++.    ..++|++++| +|++++|+.||+||+++|+.|.|...          .+|-.
T Consensus       270 ~~~~ii~~~y~lL~L~sFfT~g~~----EvRaWti~~G-~~Ap~AAG~IHsDfekgFIrAEV~~yddl~~~gs~~~~k~~  344 (368)
T TIGR00092       270 GLNIIIRARYKLLLLSFFFTGGKE----EVRAWTRKGG-WAAPQAAGIIHTDFETGFIAAEVISWDDFIYKKSSQGAKKG  344 (368)
T ss_pred             hHHHHHHHHHHHhCeeEEEcCCCc----eeEEeecCCC-CchhHhcCCcccccccCceEEEEecHHHHHHcCCHHHHHhc
Confidence            778899999999999999997644    6889999998 99999999999999999999999842          13333


Q ss_pred             C--ceeCCCceecCCCeEEEEe
Q psy2927         102 P--QKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus       102 ~--q~vg~~~~l~d~Dvv~i~~  121 (123)
                      |  +..|++|+++||||+.|--
T Consensus       345 Gk~r~eGK~YivqDGDIi~f~f  366 (368)
T TIGR00092       345 GLMRLEGKYYVVDDGDVLFFAF  366 (368)
T ss_pred             CchhhcCCeEEeeCCeEEEEec
Confidence            4  7799999999999999853

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=5.5e-14  Score=115.03  Aligned_cols=114  Identities=19%  Similarity=0.255  Sum_probs=90.0

Q ss_pred             CcccCCCCCHh---hHHHHhc-----CCCeEEEeecCC-----------------------cChHHHHHHHHHhhccceE
Q psy2927           1 MQKVSDQISIE---ELDIIYK-----IPHCVPLSAHHK-----------------------WNFDDLLEKMWEYLKLTRI   49 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l~~-----~~~~v~ISA~~~-----------------------~gld~L~e~i~~~L~~irv   49 (123)
                      |+||+|....+   .++++..     -..+||+||..+                       .||++|..+-|..|+++..
T Consensus       212 vaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~  291 (372)
T COG0012         212 VANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTY  291 (372)
T ss_pred             EEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHH
Confidence            57999977533   2555521     125999998754                       3778888899999999999


Q ss_pred             EeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC-------C---CCCCCce--eCCCceecCCCeE
Q psy2927          50 YTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS-------S---VKHQPQK--VGKEHVLNDEDVV  117 (123)
Q Consensus        50 ytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~-------s---~k~~~q~--vg~~~~l~d~Dvv  117 (123)
                      ||.++.    ..+.|+++.| +|.+|.|+.||+||.+.|+-|.+...       |   ++-.|.+  +|+||+|+||||+
T Consensus       292 ft~g~~----evrawti~~g-~kap~aaG~Ih~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi  366 (372)
T COG0012         292 FTAGVK----EVRAWTIKDG-SKAPDAAGVIHPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVI  366 (372)
T ss_pred             HhhcCC----eEEEEEeccC-CcccccCCccccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEE
Confidence            999974    6779999998 99999999999999999999998731       1   2223333  9999999999999


Q ss_pred             EE
Q psy2927         118 QI  119 (123)
Q Consensus       118 ~i  119 (123)
                      .+
T Consensus       367 ~F  368 (372)
T COG0012         367 HF  368 (372)
T ss_pred             EE
Confidence            55

>KOG1491|consensus

Probab=99.21  E-value=5.9e-12  Score=102.49  Aligned_cols=85  Identities=18%  Similarity=0.237  Sum_probs=72.8

Q ss_pred             ChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCC
Q psy2927          32 NFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQ  101 (123)
Q Consensus        32 gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~  101 (123)
                      .|.+++.+.++.|+++..||.++.    ..+.|+|++| ++++++|..||+||.++|..|.|.-.          .++..
T Consensus       293 ~L~~iI~~~~~~L~li~fFt~G~~----eV~~WtIr~g-t~ap~aagvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~  367 (391)
T KOG1491|consen  293 ALPKIIKTGYSALNLIVFFTCGED----EVRAWTIRKG-TKAPQAAGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAA  367 (391)
T ss_pred             chhHHHHHHHHhhCceEEEeeCCc----hheeeehhhc-cccccccceeeehhhhhccccceeeeehHHHhcCHHHHHHh
Confidence            567789999999999999999865    6779999998 99999999999999999999998731          12222


Q ss_pred             C--ceeCCCceecCCCeEEEEe
Q psy2927         102 P--QKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus       102 ~--q~vg~~~~l~d~Dvv~i~~  121 (123)
                      |  .|+|++|+++||||+.+.-
T Consensus       368 Gk~~~~Gk~yiVedGDIi~FK~  389 (391)
T KOG1491|consen  368 GKYRQVGKEYIVEDGDIIFFKF  389 (391)
T ss_pred             cchhhcCceeeecCCCEEEEee
Confidence            3  7899999999999998854

>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional

Probab=99.17  E-value=8e-11  Score=103.83  Aligned_cols=63  Identities=22%  Similarity=0.287  Sum_probs=55.2

Q ss_pred             ccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          45 KLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        45 ~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      ..+.||| |+|.      ++.||+| ||+-|+|++||+++..++..|.|       .|++|.++|+|++||+|+|+|.
T Consensus       404 d~V~VfT-PkG~------~~~Lp~g-aT~lDfAy~iHt~iG~~~~gAkv-------ng~~v~l~~~L~~GD~VeIits  466 (743)
T PRK10872        404 DRVYVFT-PKGD------VVDLPAG-STPLDFAYHIHSDVGHRCIGAKI-------GGRIVPFTYQLQMGDQIEIITQ  466 (743)
T ss_pred             CeEEEEC-CCCC------eEEcCCC-CcHHHHHHHHhHHHHhhceEEEE-------CCEECCCCcCCCCCCEEEEEeC
Confidence            5566777 3442      8999998 99999999999999999999986       5689999999999999999985

>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family

Probab=99.10  E-value=2.6e-10  Score=99.96  Aligned_cols=63  Identities=29%  Similarity=0.410  Sum_probs=54.5

Q ss_pred             ccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          45 KLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        45 ~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      ..+-||| |+|      +.+.||+| ||+.|+|+.||+++...+.+|.|+|       ++|+++|+|++||+|+|+|.
T Consensus       360 ~~i~vfT-PkG------~~~~lp~g-st~~DfAy~ih~~~g~~~~~a~vng-------~~v~l~~~l~~gd~vei~t~  422 (683)
T TIGR00691       360 EEIYVFT-PKG------DVVELPSG-STPVDFAYAVHTDVGNKCTGAKVNG-------KIVPLDKELENGDVVEIITG  422 (683)
T ss_pred             CceEEEC-CCC------eEEEcCCC-CCHHHHHHHHhHHhHhceeEEEECC-------EECCCCccCCCCCEEEEEeC
Confidence            4456666 333      38999998 9999999999999999999999866       58999999999999999985

(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.05  E-value=2.7e-10  Score=87.64  Aligned_cols=52  Identities=44%  Similarity=0.731  Sum_probs=46.9

Q ss_pred             CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeC
Q psy2927           1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTK   52 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk   52 (123)
                      |+||+|+++.++++.+...++.+++||.+++|+++|.+.||+.|++||||||
T Consensus       182 V~NK~Dl~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~L~~irvy~k  233 (233)
T cd01896         182 VYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLGLIRVYTK  233 (233)
T ss_pred             EEECccCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHHHHHHHHhCcEEEecC
Confidence            6899999988887766555678999999999999999999999999999997

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional

Probab=98.71  E-value=3.5e-08  Score=86.93  Aligned_cols=52  Identities=23%  Similarity=0.213  Sum_probs=47.9

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      .+.||.| ||+-|||++||+++.....-|.|       .|+.|.++|+|++||+|+|+|.
T Consensus       397 v~~LP~G-aT~lDFAY~iHt~iG~~c~gAkV-------Ng~~vpL~~~L~~Gd~VeIiT~  448 (702)
T PRK11092        397 IVELPAG-ATPVDFAYAVHTDIGHACVGARV-------DRQPYPLSQPLTSGQTVEIITA  448 (702)
T ss_pred             EEeCCCC-CchhhhhHhhCchhhceeEEEEE-------CCEECCCCccCCCCCEEEEEeC
Confidence            7899998 99999999999999988888876       6688999999999999999985

>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]

Probab=98.56  E-value=1.5e-07  Score=82.70  Aligned_cols=76  Identities=22%  Similarity=0.229  Sum_probs=61.4

Q ss_pred             HHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecC
Q psy2927          34 DDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLND  113 (123)
Q Consensus        34 d~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d  113 (123)
                      .++++.+-..|-..+||.=.|..     +-+.||.| ||+-|||+.||+++..+-..|.|       .|+.|.++|.|+.
T Consensus       374 ~ef~e~~k~dlf~d~VyvfTPkG-----~vi~LP~G-atplDFAY~vHt~iG~~c~gAkV-------nG~ivpl~~~Lk~  440 (701)
T COG0317         374 GEFLEQLKSDLFPDRVYVFTPKG-----KVIDLPKG-ATPLDFAYAVHTDIGHRCIGAKV-------NGRIVPLTTKLQT  440 (701)
T ss_pred             HHHHHHHhhcccCceEEEECCCC-----CEEeCCCC-CcchhhhhhhhchhcceeeEEEE-------CCEEeccceecCC
Confidence            55666666666666776633322     27889998 99999999999999998888886       6688999999999


Q ss_pred             CCeEEEEec
Q psy2927         114 EDVVQIVKK  122 (123)
Q Consensus       114 ~Dvv~i~~~  122 (123)
                      ||+|+|+|.
T Consensus       441 Gd~VEIit~  449 (701)
T COG0317         441 GDQVEIITS  449 (701)
T ss_pred             CCEEEEEeC
Confidence            999999985

>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin

Probab=98.11  E-value=1.2e-05  Score=47.41  Aligned_cols=52  Identities=40%  Similarity=0.450  Sum_probs=45.6

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      .++.++.| +|+.|++..+|..+.+.+..|.++|       +.+++++.|.++|.|++++
T Consensus         9 ~~~~~~~g-~t~~~~~~~~~~~~~~~~~~~~vn~-------~~~~l~~~l~~~~~i~~i~   60 (60)
T cd01616           9 SAVELPKG-ATAMDFALKIHTDLGKGFIGALVNG-------QLVDLSYTLQDGDTVSIVT   60 (60)
T ss_pred             CEEEcCCC-CCHHHHHHHHHHHHHhheEEEEECC-------EECCCCcCcCCCCEEEEeC
Confidence            47888887 9999999999999999998888754       6689999999999999874

TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.

>COG2262 HflX GTPases [General function prediction only]

Probab=97.90  E-value=2.3e-05  Score=65.30  Aligned_cols=46  Identities=28%  Similarity=0.203  Sum_probs=37.5

Q ss_pred             CcccCCCCCHhh-HHHHh-cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-LDIIY-KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l~-~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|++..+. +..+. ..|..|+|||.+|+|++.|++.|.+.|..
T Consensus       310 v~NKiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~  357 (411)
T COG2262         310 VLNKIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSG  357 (411)
T ss_pred             EEecccccCchhhhhhhhhcCCCeEEEEeccCcCHHHHHHHHHHHhhh
Confidence            689999986654 44443 33469999999999999999999999874

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=97.52  E-value=0.00012  Score=59.77  Aligned_cols=44  Identities=25%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             CcccCCCCCHhhHHHH-hcCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDII-YKIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l-~~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.+.+.+..+ ...+..+++||++|.|+++|.+.|.+.+
T Consensus       307 V~NK~Dl~~~~~v~~~~~~~~~~i~iSAktg~GI~eL~~~I~~~~  351 (351)
T TIGR03156       307 VYNKIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAERL  351 (351)
T ss_pred             EEEeecCCChHhHHHHHhCCCCEEEEEccCCCCHHHHHHHHHhhC
Confidence            6899999866555444 2334689999999999999999987753

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>TIGR00436 era GTP-binding protein Era

Probab=97.52  E-value=0.0004  Score=54.19  Aligned_cols=45  Identities=20%  Similarity=0.002  Sum_probs=34.6

Q ss_pred             CcccCCCCCHhhHH----HHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELD----IIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...+.+.    .+.   .+..++++||++|.|+++|++.+.+.|+
T Consensus       113 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       113 TRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             EEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            68999998654322    221   2346899999999999999999999874

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins

Probab=97.49  E-value=3.3e-05  Score=53.89  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=22.0

Q ss_pred             CcccCCCC-CHhhHHHH-hcCC--CeEEEeecCCcCh
Q psy2927           1 MQKVSDQI-SIEELDII-YKIP--HCVPLSAHHKWNF   33 (123)
Q Consensus         1 V~NKiD~~-~~e~l~~l-~~~~--~~v~ISA~~~~gl   33 (123)
                      |+||+|+. ..+.+++| .+++  .+||+||..++-|
T Consensus         1 AaNK~D~~~a~~ni~kl~~~~~~~~vVp~SA~aEl~L   37 (109)
T PF08438_consen    1 AANKADLPAADENIEKLKEKYPDEPVVPTSAAAELAL   37 (109)
T ss_dssp             EEE-GGG-S-HHHHHHHHHHHTT-EEEEE-HHHHHHH
T ss_pred             CCccccccccHhHHHHHHHhCCCCceeeccHHHHHHH
Confidence            58999985 56678888 4455  5899999887554

; PDB: 1WXQ_A.

>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response

Probab=97.48  E-value=0.00075  Score=40.55  Aligned_cols=51  Identities=27%  Similarity=0.364  Sum_probs=42.5

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      .+.++.| .|+.+++..++..+.+.+..+.+       .|+.+.+++.|.+||.|++++
T Consensus        10 ~~~~~~~-~t~~~~~~~~~~~~~~~~va~~v-------ng~~vdl~~~l~~~~~ve~v~   60 (60)
T cd01668          10 IIELPAG-ATVLDFAYAIHTEIGNRCVGAKV-------NGKLVPLSTVLKDGDIVEIIT   60 (60)
T ss_pred             EEEcCCC-CCHHHHHHHHChHhhhheEEEEE-------CCEECCCCCCCCCCCEEEEEC
Confidence            6778887 99999999999888877776665       446688889999999999874

RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=97.45  E-value=0.00022  Score=52.42  Aligned_cols=45  Identities=27%  Similarity=0.278  Sum_probs=32.5

Q ss_pred             CcccCCCCCHhh---HHH----H-h--cC-----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE---LDI----I-Y--KI-----PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~----l-~--~~-----~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|++..+.   +++    + .  .+     .+++|+||.+|+|+++|+++|.+.++
T Consensus       128 vlNK~D~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P  187 (188)
T PF00009_consen  128 VLNKMDLIEKELEEIIEEIKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP  187 (188)
T ss_dssp             EEETCTSSHHHHHHHHHHHHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred             eeeeccchhhhHHHHHHHHHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            589999983321   122    2 1  11     24899999999999999999999885

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd01859 MJ1464 MJ1464

Probab=97.39  E-value=0.00016  Score=51.36  Aligned_cols=45  Identities=22%  Similarity=0.123  Sum_probs=34.3

Q ss_pred             CcccCCCCCHhhHHH---Hh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDI---IY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~---l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.+....   +. . ...++++||.++.|+++|.+.+.+.++
T Consensus        47 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          47 VLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             EEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHh
Confidence            589999876543332   21 1 225799999999999999999999886

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>COG1159 Era GTPase [General function prediction only]

Probab=97.36  E-value=7.1e-05  Score=60.22  Aligned_cols=46  Identities=30%  Similarity=0.312  Sum_probs=37.5

Q ss_pred             CcccCCCCCHhh-HHHH-h------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-LDII-Y------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l-~------~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      ++||+|...++. +..+ .      .|.+++||||.+|.|++.|++.+.++|+.
T Consensus       120 ~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~i~~~Lpe  173 (298)
T COG1159         120 VVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEIIKEYLPE  173 (298)
T ss_pred             EEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHHHHHhCCC
Confidence            579999997665 3333 1      35589999999999999999999999975

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=97.35  E-value=0.00032  Score=49.52  Aligned_cols=44  Identities=18%  Similarity=0.185  Sum_probs=33.2

Q ss_pred             CcccCCCCCHhhHH---HHhc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELD---IIYK--IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~---~l~~--~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.....+.   .+..  ....+++||++|.|+++|.+.+.+.|
T Consensus       119 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         119 VLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             EEEccccCchhhHHHHHHhhhhccCceEEEEecccCCHHHHHHHHHHHh
Confidence            58999998655433   2222  22578999999999999999988865

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01856 YlqF YlqF

Probab=97.31  E-value=0.00029  Score=51.19  Aligned_cols=46  Identities=15%  Similarity=0.029  Sum_probs=34.9

Q ss_pred             CcccCCCCCHhhHHHH----h-cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDII----Y-KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~-~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+.+.+...    . ....++++||.++.|+++|.+.+.+.++.
T Consensus        52 VlNK~Dl~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~l~~~l~~  102 (171)
T cd01856          52 VLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGKGVKKLLKAAKKLLKD  102 (171)
T ss_pred             EEehhhcCChHHHHHHHHHHHhcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            6899999866443221    1 22357899999999999999999998754

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=97.30  E-value=0.00035  Score=52.17  Aligned_cols=45  Identities=29%  Similarity=0.358  Sum_probs=33.6

Q ss_pred             CcccCCCCCHhhH----HHH----hc----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEEL----DII----YK----IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l----~~----~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...+++    +.+    ..    ..+++++||.+|+|+++|.+.+.+.++
T Consensus       143 vvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l~  199 (203)
T cd01888         143 VQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIP  199 (203)
T ss_pred             EEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhCC
Confidence            5899999864332    222    11    235899999999999999999998774

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>cd01855 YqeH YqeH

Probab=97.28  E-value=0.00015  Score=53.36  Aligned_cols=45  Identities=13%  Similarity=0.288  Sum_probs=33.1

Q ss_pred             CcccCCCCCHhh----HHHHh--------c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE----LDIIY--------K--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l~--------~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+++.+.    +..+.        .  ...++++||.+++|+++|.+.+.+.++
T Consensus        67 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~  125 (190)
T cd01855          67 VGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK  125 (190)
T ss_pred             EEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence            689999874322    21111        1  125899999999999999999999875

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK04213 GTP-binding protein; Provisional

Probab=97.23  E-value=0.00044  Score=50.74  Aligned_cols=45  Identities=27%  Similarity=0.331  Sum_probs=32.5

Q ss_pred             CcccCCCCCHh--hHHHHh---cC--C------CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE--ELDIIY---KI--P------HCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e--~l~~l~---~~--~------~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...+  ..+.+.   ..  +      .++++||.+| |+++|.+.|.+.+..
T Consensus       136 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        136 AVNKMDKIKNRDEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             EEECccccCcHHHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            68999987443  333331   11  1      3789999999 999999999987653

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=97.22  E-value=0.00045  Score=49.36  Aligned_cols=44  Identities=11%  Similarity=0.011  Sum_probs=33.0

Q ss_pred             CcccCCCCCHhhHHH----Hh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDI----IY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+++.+++..    +. . ...++++||.++.|+++|.+.+.+.+
T Consensus        35 VlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~   84 (155)
T cd01849          35 VLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQT   84 (155)
T ss_pred             EEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHh
Confidence            689999987664432    22 2 23479999999999999999987654

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=97.20  E-value=0.00043  Score=59.36  Aligned_cols=45  Identities=22%  Similarity=0.236  Sum_probs=34.5

Q ss_pred             CcccCCCCC--HhhH----HHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS--IEEL----DIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~--~e~l----~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||||+..  ++.+    +.+.  ...+++.+||++|.|+++++++|-+.++
T Consensus       134 ViNKIDLP~Adpervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP  186 (603)
T COG0481         134 VLNKIDLPAADPERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIP  186 (603)
T ss_pred             eeecccCCCCCHHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCC
Confidence            689999883  4432    2222  2236899999999999999999999875

>cd01894 EngA1 EngA1 subfamily

Probab=97.19  E-value=0.00068  Score=46.79  Aligned_cols=44  Identities=30%  Similarity=0.437  Sum_probs=33.3

Q ss_pred             CcccCCCCCHhhH-HHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEEL-DIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l-~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...+.. ..+.  ...+.+++||+++.|+++|.+.+.+.+
T Consensus       111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (157)
T cd01894         111 VVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL  157 (157)
T ss_pred             EEECcccCChHHHHHHHHhcCCCCeEEEecccCCCHHHHHHHHHhhC
Confidence            6899999865543 2332  234689999999999999999988753

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01858 NGP_1 NGP-1

Probab=97.18  E-value=0.00035  Score=49.99  Aligned_cols=46  Identities=13%  Similarity=0.177  Sum_probs=34.8

Q ss_pred             CcccCCCCCHhhHHH----Hh-cCC-CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDI----IY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+++++++..    +. .++ ..+++||..+.|+++|++.+.+.+..
T Consensus        45 VlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~~~   96 (157)
T cd01858          45 VLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFSKL   96 (157)
T ss_pred             EEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHHhh
Confidence            689999987665432    21 222 25789999999999999999988764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG1489|consensus

Probab=97.17  E-value=0.00041  Score=56.75  Aligned_cols=43  Identities=28%  Similarity=0.410  Sum_probs=32.8

Q ss_pred             CcccCCCCCHh-h-HHHHh-c--CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIE-E-LDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e-~-l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||||+.+.+ . +..|. +  -++++|+||++++|+++|+..|.+.
T Consensus       318 VaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  318 VANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             EEeccCchhHHHHHHHHHHHHcCCCcEEEeeeccccchHHHHHHHhhc
Confidence            68999986433 3 46663 2  2468999999999999999988764

>PRK01777 hypothetical protein; Validated

Probab=97.15  E-value=0.0006  Score=46.37  Aligned_cols=64  Identities=17%  Similarity=0.268  Sum_probs=42.4

Q ss_pred             hccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcc-------eeEEecCCCCCCCceeCCCceecCCCe
Q psy2927          44 LKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFK-------YALVWGSSVKHQPQKVGKEHVLNDEDV  116 (123)
Q Consensus        44 L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~-------~A~vwg~s~k~~~q~vg~~~~l~d~Dv  116 (123)
                      +...-+|-.+....+   ..+-++.| +||.|+....  .+...|-       -..||       |+.+..|++|+|||.
T Consensus         4 i~v~V~ya~~~~~~~---~~l~vp~G-tTv~dal~~s--gi~~~~pei~~~~~~vgI~-------Gk~v~~d~~L~dGDR   70 (95)
T PRK01777          4 IRVEVVYALPERQYL---QRLTLQEG-ATVEEAIRAS--GLLELRTDIDLAKNKVGIY-------SRPAKLTDVLRDGDR   70 (95)
T ss_pred             eEEEEEEECCCceEE---EEEEcCCC-CcHHHHHHHc--CCCccCcccccccceEEEe-------CeECCCCCcCCCCCE
Confidence            334455764433323   47788997 9999998664  3433332       22234       466789999999999


Q ss_pred             EEEE
Q psy2927         117 VQIV  120 (123)
Q Consensus       117 v~i~  120 (123)
                      |+|.
T Consensus        71 VeIy   74 (95)
T PRK01777         71 VEIY   74 (95)
T ss_pred             EEEe
Confidence            9996

>TIGR00101 ureG urease accessory protein UreG

Probab=97.13  E-value=0.00065  Score=51.22  Aligned_cols=46  Identities=13%  Similarity=0.084  Sum_probs=33.7

Q ss_pred             CcccCCCCCH--hhHH----HH---hcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI--EELD----II---YKIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~--e~l~----~l---~~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      ++||+|+.+.  ++++    .+   ......+.+||++|+|+++|.+.+.+.+-+
T Consensus       143 ~~~k~d~~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~~  197 (199)
T TIGR00101       143 VINKIDLAPMVGADLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYALL  197 (199)
T ss_pred             EEEhhhccccccccHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            5799999852  2222    22   123468999999999999999999987643

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=97.09  E-value=0.00047  Score=47.50  Aligned_cols=44  Identities=23%  Similarity=0.199  Sum_probs=33.6

Q ss_pred             CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.............+.+++||.++.|+++|.+.|.+.+
T Consensus       113 v~nK~D~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         113 VLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA  156 (157)
T ss_pred             EEEchhcCCccccccccCCCceEEEECCCCCCHHHHHHHHHHhh
Confidence            58999988655442112234689999999999999999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=97.09  E-value=0.00086  Score=54.34  Aligned_cols=44  Identities=27%  Similarity=0.302  Sum_probs=33.7

Q ss_pred             CcccCCCCCHhhHHH----Hh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDI----IY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...+.++.    +. .. ..++++||++++|+++|.+.|.+.|
T Consensus       279 V~NK~DL~~~~~~~~~~~~l~~~~~~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       279 VLNKIDLLDEEELAELLKELKKALGKPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             EEeCccCCChHHHHHHHHHHHHHcCCcEEEEEccCCcCHHHHHHHHHHHh
Confidence            689999986544332    21 22 2589999999999999999999876

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd01890 LepA LepA subfamily

Probab=97.08  E-value=0.00085  Score=47.90  Aligned_cols=44  Identities=23%  Similarity=0.240  Sum_probs=31.7

Q ss_pred             CcccCCCCCHh--h-HHHHh---cCC--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE--E-LDIIY---KIP--HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e--~-l~~l~---~~~--~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....  + .+.+.   ..+  ..+++||.+|.|+++|.+.+.+.+
T Consensus       125 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         125 VINKIDLPSADPERVKQQIEDVLGLDPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             EEECCCCCcCCHHHHHHHHHHHhCCCcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            58999986321  1 22331   222  488999999999999999998875

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd01878 HflX HflX subfamily

Probab=97.08  E-value=0.00085  Score=49.43  Aligned_cols=44  Identities=32%  Similarity=0.302  Sum_probs=33.5

Q ss_pred             CcccCCCCCHhhHHHH-h-cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDII-Y-KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l-~-~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+......... . ...+++++||.++.|++++.+.|.+.|
T Consensus       159 V~NK~Dl~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~L~~~~  204 (204)
T cd01878         159 VLNKIDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIEELL  204 (204)
T ss_pred             EEEccccCChHHHHHHhhcCCCceEEEEcCCCCCHHHHHHHHHhhC
Confidence            6899999865544322 2 334689999999999999999988764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=97.07  E-value=0.00079  Score=57.08  Aligned_cols=45  Identities=24%  Similarity=0.324  Sum_probs=34.0

Q ss_pred             CcccCCCCCHhhHH----HHh--------cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELD----IIY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.+.++    .+.        ...+++|+||.+|.|++.|++.|.+.++
T Consensus       177 vlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp  233 (460)
T PTZ00327        177 LQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIP  233 (460)
T ss_pred             EEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCC
Confidence            58999998654322    221        1235899999999999999999998665

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=97.05  E-value=0.00093  Score=48.09  Aligned_cols=46  Identities=11%  Similarity=0.122  Sum_probs=33.7

Q ss_pred             CcccCCCCCH--hhHHHH-hc--C-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI--EELDII-YK--I-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~--e~l~~l-~~--~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      ++||+|+...  +.+..+ ..  + .+++++||++|.|+++|.+.+.+.+..
T Consensus        97 v~nK~Dl~~~~~~~~~~~~~~~~~~~p~~~~Sa~~g~gi~~l~~~l~~~~~~  148 (158)
T PRK15467         97 VISKTDMPDADVAATRKLLLETGFEEPIFELNSHDPQSVQQLVDYLASLTKQ  148 (158)
T ss_pred             EEEccccCcccHHHHHHHHHHcCCCCCEEEEECCCccCHHHHHHHHHHhchh
Confidence            5799998643  222222 22  2 368999999999999999999998753

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=97.04  E-value=0.00076  Score=47.61  Aligned_cols=44  Identities=27%  Similarity=0.353  Sum_probs=32.8

Q ss_pred             CcccCCCCCHhhHHH----H-h--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDI----I-Y--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l-~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+........    . .  .....+++||.++.|+++|.+.+.+.|
T Consensus       126 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~~  176 (176)
T cd01881         126 VLNKIDLDDAEELEEELVRELALEEGAEVVPISAKTEEGLDELIRAIYELL  176 (176)
T ss_pred             EEEchhcCchhHHHHHHHHHHhcCCCCCEEEEehhhhcCHHHHHHHHHhhC
Confidence            579999986554332    1 1  233689999999999999999987654

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>PRK00089 era GTPase Era; Reviewed

Probab=97.04  E-value=0.0021  Score=50.32  Aligned_cols=45  Identities=31%  Similarity=0.427  Sum_probs=34.8

Q ss_pred             CcccCCCC-CHhhH----HHHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQI-SIEEL----DIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~-~~e~l----~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+. +.+.+    +.+.   .+.+++++||.++.|+++|.+.+.+.++
T Consensus       119 VlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~  171 (292)
T PRK00089        119 VLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVDELLDVIAKYLP  171 (292)
T ss_pred             EEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCC
Confidence            58999998 44433    2232   2456899999999999999999999874

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.00  E-value=0.00098  Score=48.48  Aligned_cols=41  Identities=10%  Similarity=0.014  Sum_probs=31.3

Q ss_pred             CcccCCCC-CHhhHHHH----h--cCCCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQI-SIEELDII----Y--KIPHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~-~~e~l~~l----~--~~~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+. +++++++.    .  ...+++++||.+|+|+++|.+.+.
T Consensus        95 VITK~Dl~~~~~~i~~a~~~L~~aG~~~if~vS~~~~eGi~eL~~~L~  142 (143)
T PF10662_consen   95 VITKIDLPSDDANIERAKKWLKNAGVKEIFEVSAVTGEGIEELKDYLE  142 (143)
T ss_pred             EEECccCccchhhHHHHHHHHHHcCCCCeEEEECCCCcCHHHHHHHHh
Confidence            68999998 45555432    1  344689999999999999998774

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>cd01899 Ygr210 Ygr210 subfamily

Probab=97.00  E-value=0.002  Score=52.15  Aligned_cols=73  Identities=10%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             CcccCCCCCHhh-HHHHh---cCCCeEEEeecCCcChHHHHH-HHHHhhccceEEeCCCCCCCCCcccEEEeCC---CCC
Q psy2927           1 MQKVSDQISIEE-LDIIY---KIPHCVPLSAHHKWNFDDLLE-KMWEYLKLTRIYTKPKGQLPDYQSPVVLHTD---RRS   72 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l~---~~~~~v~ISA~~~~gld~L~e-~i~~~L~~irvytk~~g~~pd~~~~~~l~~g---~~t   72 (123)
                      |+||+|+...++ .+.+.   .+...+++||..+.|+++|.+ .+.++|+.-          |    ++.+...   ..+
T Consensus       220 VlNK~Dl~~~~~~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe~----------~----~f~~~~~~~~~~~  285 (318)
T cd01899         220 AANKADIPDAENNISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPGD----------S----DFEITDELGLSEK  285 (318)
T ss_pred             EEEHHHccChHHHHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCCC----------C----CceecccCCCCHH
Confidence            589999875544 33331   345799999999999999998 699999632          2    2333221   136


Q ss_pred             HHHHHHHhHHHHHhh
Q psy2927          73 IEDFCNKLHRTIAKE   87 (123)
Q Consensus        73 v~d~a~~IH~d~~~~   87 (123)
                      ...+.+.|+..+...
T Consensus       286 ~~~~l~~i~d~~~~~  300 (318)
T cd01899         286 QKEALESIRDEVLDR  300 (318)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            677888888644433

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>cd01898 Obg Obg subfamily

Probab=96.95  E-value=0.0011  Score=46.67  Aligned_cols=44  Identities=30%  Similarity=0.315  Sum_probs=32.7

Q ss_pred             CcccCCCCCHhhH----HHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEEL----DII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.+....    ..+ ..  ..+++++||+++.|+++|.+.+.+.|
T Consensus       120 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~  170 (170)
T cd01898         120 VLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGLDELLRKLAELL  170 (170)
T ss_pred             EEEchhcCCchhhHHHHHHHHhhCCCCCEEEEecCCCCCHHHHHHHHHhhC
Confidence            5899998755432    222 22  34689999999999999999988764

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>PRK09866 hypothetical protein; Provisional

Probab=96.95  E-value=0.0009  Score=59.28  Aligned_cols=43  Identities=9%  Similarity=0.119  Sum_probs=32.6

Q ss_pred             CcccCCCCC-----HhhHHHH-----h----cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQIS-----IEELDII-----Y----KIPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l-----~----~~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+.+     .+.+...     .    .++.++||||..|.|+++|++.|.+.
T Consensus       295 VVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~  351 (741)
T PRK09866        295 LVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN  351 (741)
T ss_pred             EEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence            579999875     2333221     1    24579999999999999999999885

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=96.95  E-value=0.0011  Score=55.76  Aligned_cols=49  Identities=29%  Similarity=0.323  Sum_probs=36.7

Q ss_pred             CcccCCCCCH-hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhccceE
Q psy2927           1 MQKVSDQISI-EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRI   49 (123)
Q Consensus         1 V~NKiD~~~~-e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~irv   49 (123)
                      |+||+|+... +.++.+. .+ ..++++||.+++|+++|.+.|++.|...+-
T Consensus       280 V~NK~DL~~~~e~l~~l~~~l~~~i~~iSA~tgeGI~eL~~~L~~~l~~~~~  331 (424)
T PRK12297        280 VANKMDLPEAEENLEEFKEKLGPKVFPISALTGQGLDELLYAVAELLEETPE  331 (424)
T ss_pred             EEeCCCCcCCHHHHHHHHHHhCCcEEEEeCCCCCCHHHHHHHHHHHHHhCcc
Confidence            6899997533 3344442 22 358899999999999999999998876543

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=96.94  E-value=0.0014  Score=47.72  Aligned_cols=45  Identities=20%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CcccCCCCC---HhhHHHHh---cC-----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS---IEELDIIY---KI-----PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~---~e~l~~l~---~~-----~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+..   .++++.+.   ..     ...+++||.++.|+++|.+.+.+.+-
T Consensus       115 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         115 LANKQDLPNALSVSEVEKLLALHELSASTPWHVQPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             EEECcCccccCCHHHHHHHhCccccCCCCceEEEEeecccCCCHHHHHHHHHHHHH
Confidence            589999863   23444331   11     13678999999999999999887763

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>KOG0462|consensus

Probab=96.93  E-value=0.0014  Score=57.01  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=34.8

Q ss_pred             CcccCCCC--CHhhHH----HHhcCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQI--SIEELD----IIYKIP--HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~--~~e~l~----~l~~~~--~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||||+.  +++.++    .+...+  +++.+||++|+|.++|+++|-+..+
T Consensus       183 VlNKIDlp~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVP  235 (650)
T KOG0462|consen  183 VLNKIDLPSADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVP  235 (650)
T ss_pred             eeeccCCCCCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCC
Confidence            68999998  445543    222222  6899999999999999999999764

>KOG1487|consensus

Probab=96.91  E-value=0.00021  Score=57.38  Aligned_cols=49  Identities=18%  Similarity=0.146  Sum_probs=44.8

Q ss_pred             HHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCC--CeEEEEe
Q psy2927          73 IEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDE--DVVQIVK  121 (123)
Q Consensus        73 v~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~--Dvv~i~~  121 (123)
                      ++|=..++|+..++.|.||++||+++|+.+|.+|.+|-+.+|  ||.++..
T Consensus         9 ie~emaktqKNkat~~hlgllkaklaKlrreli~~g~~g~~~gfDV~ktg~   59 (358)
T KOG1487|consen    9 IEDEMARTQKNKATSFHLGLLKAKLAKLRRELITGGGGGGGGGFDVAKTGD   59 (358)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHhhhhHhhccCCCCCCCCCccceeecc
Confidence            455566999999999999999999999999999999999999  9999864

>PRK15494 era GTPase Era; Provisional

Probab=96.89  E-value=0.0022  Score=52.06  Aligned_cols=45  Identities=24%  Similarity=0.184  Sum_probs=33.3

Q ss_pred             CcccCCCCCH--hhHHHH-h-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI--EELDII-Y-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~--e~l~~l-~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...  +++... . .  +..++++||.+|.|+++|++.+.+.|+
T Consensus       166 ViNKiDl~~~~~~~~~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~  216 (339)
T PRK15494        166 LLNKIDIESKYLNDIKAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAK  216 (339)
T ss_pred             EEEhhcCccccHHHHHHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCC
Confidence            5799998643  122222 2 2  235899999999999999999999885

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=96.86  E-value=0.0015  Score=53.10  Aligned_cols=46  Identities=24%  Similarity=0.299  Sum_probs=34.2

Q ss_pred             CcccCCCCCHhhHH-----HH-hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELD-----II-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~-----~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|++..++..     .. ... ..++++||.+++|+++|++.|++.+..
T Consensus       277 V~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        277 VLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             EEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            68999987544321     11 122 358999999999999999999998754

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.86  E-value=0.0013  Score=52.80  Aligned_cols=43  Identities=12%  Similarity=0.033  Sum_probs=32.1

Q ss_pred             CcccCCCCCH--hhHHHH----h---cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI--EELDII----Y---KIPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~--e~l~~l----~---~~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+++.  .+++.+    .   ....++++||.+|+|+++|.+.+.+.
T Consensus       236 VLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~  287 (290)
T PRK10463        236 LLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ  287 (290)
T ss_pred             EEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            5899999862  233322    1   23468999999999999999988764

>cd01889 SelB_euk SelB subfamily

Probab=96.85  E-value=0.0017  Score=47.59  Aligned_cols=45  Identities=18%  Similarity=0.209  Sum_probs=32.4

Q ss_pred             CcccCCCCCHhh----HHHHh----------cC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE----LDIIY----------KI--PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l~----------~~--~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...++    ++.+.          .+  ..++++||++|.|+++|++.+-+.+.
T Consensus       126 v~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~  186 (192)
T cd01889         126 VLNKIDLIPEEERERKIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIV  186 (192)
T ss_pred             EEECcccCCHHHHHHHHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhccc
Confidence            579999875432    12111          11  25899999999999999999988764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01864 Rab19 Rab19 subfamily

Probab=96.83  E-value=0.0018  Score=45.79  Aligned_cols=44  Identities=20%  Similarity=0.111  Sum_probs=31.9

Q ss_pred             CcccCCCCCH-----hhHHHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+ ..  ....+++||++|.|++++.+.+.+.|
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~l~~~l  165 (165)
T cd01864         114 IGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEEAFLLMATEL  165 (165)
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHHHHHHHHHhC
Confidence            5899998743     223333 22  23579999999999999999988754

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG1160 Predicted GTPases [General function prediction only]

Probab=96.83  E-value=0.0019  Score=54.61  Aligned_cols=45  Identities=31%  Similarity=0.418  Sum_probs=36.3

Q ss_pred             CcccCCCCCHhh-HHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE-LDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|-...++ ...+.  .+.+.++|||.+|.|+++|++++.+.|+
T Consensus       118 vvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~l~  165 (444)
T COG1160         118 VVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLELLP  165 (444)
T ss_pred             EEEcccCchhhhhHHHHHhcCCCCceEeehhhccCHHHHHHHHHhhcC
Confidence            689999875443 33332  4668999999999999999999999985

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=96.83  E-value=0.002  Score=44.78  Aligned_cols=45  Identities=16%  Similarity=0.109  Sum_probs=32.2

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+ ..+ -+++++||.++.|+++|.+.+.+.+.
T Consensus       111 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         111 VGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             EEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            5899998752     112222 221 25899999999999999999987763

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=96.80  E-value=0.0017  Score=53.86  Aligned_cols=46  Identities=15%  Similarity=0.135  Sum_probs=35.0

Q ss_pred             CcccCCCCCHhhH----HHH-hcC---CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEEL----DII-YKI---PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l-~~~---~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|++..+++    ..+ ..+   ..++++||+++.|+++|++.|.+.|+.
T Consensus       281 VlNKiDl~~~~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        281 VFNKIDLLDEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             EEeCCccCChHHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence            6899998865443    223 122   258999999999999999999998864

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=96.80  E-value=0.0015  Score=56.07  Aligned_cols=49  Identities=16%  Similarity=0.076  Sum_probs=36.5

Q ss_pred             CcccCCCCCHhhHH-H----HhcC-CCeEEEeecCCcChHHHHHHHHHhhccceE
Q psy2927           1 MQKVSDQISIEELD-I----IYKI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRI   49 (123)
Q Consensus         1 V~NKiD~~~~e~l~-~----l~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~irv   49 (123)
                      |+||+|+....++. .    +... -.+++|||.+++|+++|++.|++.+...+.
T Consensus       290 VlNKiDL~da~el~e~l~~~l~~~g~~Vf~ISA~tgeGLdEL~~~L~ell~~~r~  344 (500)
T PRK12296        290 VLNKIDVPDARELAEFVRPELEARGWPVFEVSAASREGLRELSFALAELVEEARA  344 (500)
T ss_pred             EEECccchhhHHHHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHhhhc
Confidence            68999987554322 1    2121 258999999999999999999999877653

>cd04175 Rap1 Rap1 subgroup

Probab=96.79  E-value=0.0017  Score=45.73  Aligned_cols=45  Identities=13%  Similarity=0.093  Sum_probs=32.7

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. .+ -+.+++||++|.|++++.+.+.+.|.
T Consensus       112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         112 VGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             EEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHhh
Confidence            5799998632     2233342 22 25889999999999999999988663

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=96.79  E-value=0.0013  Score=54.21  Aligned_cols=46  Identities=35%  Similarity=0.486  Sum_probs=35.7

Q ss_pred             CcccCCCCCHhh-HH---HHh--------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-LD---IIY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-l~---~l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |.||+|+++.|. ++   ++.        +-.++|||||..+.|+|.|+++|.+.++.
T Consensus       146 vQNKIDlV~~E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt  203 (415)
T COG5257         146 VQNKIDLVSRERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT  203 (415)
T ss_pred             EecccceecHHHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence            469999998764 22   221        22369999999999999999999998763

>cd04171 SelB SelB subfamily

Probab=96.77  E-value=0.0023  Score=44.54  Aligned_cols=42  Identities=19%  Similarity=0.097  Sum_probs=29.8

Q ss_pred             CcccCCCCCHhh----HHHH----hc----CCCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIEE----LDII----YK----IPHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l----~~----~~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+...+.    .+.+    ..    ....+++||+++.|+++|.+.+.+
T Consensus       110 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         110 VLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEEeCCCCcCHHHHHHHHhh
Confidence            589999876531    1121    11    236899999999999999988754

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.76  E-value=0.0019  Score=52.67  Aligned_cols=77  Identities=8%  Similarity=0.098  Sum_probs=47.4

Q ss_pred             CcccCCCCCHhhH----HHH----h--c-----C-CCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccE
Q psy2927           1 MQKVSDQISIEEL----DII----Y--K-----I-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPV   64 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l----~--~-----~-~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~   64 (123)
                      |+||+|++.....    ..+    .  .     + ++++++||.++.|+++|.+.|.+.+.    |..+.|..-+     
T Consensus       200 VVNKaDl~~~~~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~----~l~~sg~l~~-----  270 (332)
T PRK09435        200 VINKADGDNKTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA----ALTASGEFAA-----  270 (332)
T ss_pred             EeehhcccchhHHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH----HhccCChHHH-----
Confidence            6899998854321    111    1  1     1 56899999999999999999999987    2223332111     


Q ss_pred             EEeCCCCCHHHHHHHhHHHHHhhc
Q psy2927          65 VLHTDRRSIEDFCNKLHRTIAKEF   88 (123)
Q Consensus        65 ~l~~g~~tv~d~a~~IH~d~~~~f   88 (123)
                       .++. .....+.+.|...+...|
T Consensus       271 -~r~~-~~~~~v~elire~l~~~~  292 (332)
T PRK09435        271 -RRRE-QQVDWMWEMVEEGLLDRL  292 (332)
T ss_pred             -HHHH-HHHHHHHHHHHHHHHHHH
Confidence             0111 234445666666666655

>cd01862 Rab7 Rab7 subfamily

Probab=96.73  E-value=0.0027  Score=44.73  Aligned_cols=44  Identities=11%  Similarity=-0.008  Sum_probs=32.3

Q ss_pred             CcccCCCCC-----HhhHHHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS-----IEELDII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+..     .+++..+ ..  ....+++||.+|.|+++|.+.+.+.+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  166 (172)
T cd01862         115 LGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAINVEQAFETIARKA  166 (172)
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999972     2333333 22  23688999999999999999988754

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd00881 GTP_translation_factor GTP translation factor family

Probab=96.72  E-value=0.0025  Score=45.33  Aligned_cols=25  Identities=36%  Similarity=0.344  Sum_probs=22.5

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      +++++||++|.|+++|++.+.+.|+
T Consensus       163 ~v~~~Sa~~g~gi~~l~~~l~~~l~  187 (189)
T cd00881         163 PIVPGSALTGIGVEELLEAIVEHLP  187 (189)
T ss_pred             eEEEEecccCcCHHHHHHHHHhhCC
Confidence            5789999999999999999998874

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd01892 Miro2 Miro2 subfamily

Probab=96.71  E-value=0.0024  Score=45.99  Aligned_cols=44  Identities=14%  Similarity=0.090  Sum_probs=31.9

Q ss_pred             CcccCCCCCHh-----hHHHH-h--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDII-Y--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l-~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....     +.+.+ .  ..+..+++||.+|.|+++|.+.+.+.+
T Consensus       114 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~lf~~l~~~~  165 (169)
T cd01892         114 VAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSSNELFTKLATAA  165 (169)
T ss_pred             EEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccHHHHHHHHHHHh
Confidence            58999986332     22333 2  223468999999999999999998865

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=96.70  E-value=0.0012  Score=57.70  Aligned_cols=46  Identities=11%  Similarity=0.135  Sum_probs=34.1

Q ss_pred             CcccCCCCCHhhHH----HH----hc--C--CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELD----II----YK--I--PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~l----~~--~--~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+++.++    .+    ..  +  .+++++||.+|.|+++|++.|.+....
T Consensus       110 VlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~L~~~~~~  167 (614)
T PRK10512        110 ALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREHLLQLPER  167 (614)
T ss_pred             EEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHHHHHhhcc
Confidence            68999998654322    22    11  1  358999999999999999999886654

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=96.70  E-value=0.0028  Score=43.86  Aligned_cols=44  Identities=7%  Similarity=0.018  Sum_probs=31.3

Q ss_pred             CcccCCCCCHh----hHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE----ELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....    +...+ ..+ ...+++||++|.|+++|.+.+.+.+
T Consensus       112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         112 VGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             EEECcccccceecHHHHHHHHHHhCCeEEEecCCCCCCHHHHHHHHHHHh
Confidence            58999986432    23333 222 2578999999999999999887654

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=96.70  E-value=0.0025  Score=43.99  Aligned_cols=40  Identities=10%  Similarity=0.105  Sum_probs=28.1

Q ss_pred             CcccCCCCCH----hhHHHH-h--cCCCeEEEeecCCcChHHHHHHH
Q psy2927           1 MQKVSDQISI----EELDII-Y--KIPHCVPLSAHHKWNFDDLLEKM   40 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l-~--~~~~~v~ISA~~~~gld~L~e~i   40 (123)
                      |+||+|+...    ++..++ .  ...+.+++||++|.|+++|.+.+
T Consensus        94 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l  140 (142)
T TIGR02528        94 LVTKIDLAEADVDIERAKELLETAGAEPIFEISSVDEQGLEALVDYL  140 (142)
T ss_pred             EEEeeccCCcccCHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHH
Confidence            5799998642    222232 2  22358899999999999998776

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK11058 GTPase HflX; Provisional

Probab=96.70  E-value=0.0022  Score=53.80  Aligned_cols=45  Identities=22%  Similarity=0.080  Sum_probs=32.8

Q ss_pred             CcccCCCCCHh--hHHHH-hcCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE--ELDII-YKIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e--~l~~l-~~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+....  .++.. ...+..+++||++|.|+++|.+.|.+.+.
T Consensus       315 V~NKiDL~~~~~~~~~~~~~~~~~~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        315 VMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             EEEcccCCCchhHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            68999987432  12211 12334688999999999999999999874

>cd04151 Arl1 Arl1 subfamily

Probab=96.70  E-value=0.0018  Score=45.54  Aligned_cols=42  Identities=12%  Similarity=0.088  Sum_probs=29.2

Q ss_pred             CcccCCCCCH---hhHHH-Hh--cCC----CeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISI---EELDI-IY--KIP----HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~-l~--~~~----~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+...   +++.. +.  ...    +.+++||++|.|+++|.+.+.+
T Consensus       106 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         106 FANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             EEeCCCCCCCCCHHHHHHHhCccccCCCcEEEEEeeccCCCCHHHHHHHHhc
Confidence            5899998642   23322 21  111    3899999999999999988754

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=96.69  E-value=0.0021  Score=53.03  Aligned_cols=48  Identities=25%  Similarity=0.245  Sum_probs=35.6

Q ss_pred             CcccCCCC-CHhhHHHHh-----cC--CCeEEEeecCCcChHHHHHHHHHhhccce
Q psy2927           1 MQKVSDQI-SIEELDIIY-----KI--PHCVPLSAHHKWNFDDLLEKMWEYLKLTR   48 (123)
Q Consensus         1 V~NKiD~~-~~e~l~~l~-----~~--~~~v~ISA~~~~gld~L~e~i~~~L~~ir   48 (123)
                      |+||+|++ +.++++.+.     ..  ...++|||.+++|+++|+..+++.+...+
T Consensus       281 v~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~  336 (369)
T COG0536         281 VLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREGLDELLRALAELLEETK  336 (369)
T ss_pred             EEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence            68999965 666655442     11  12233999999999999999999998765

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=96.67  E-value=0.0022  Score=44.47  Aligned_cols=44  Identities=23%  Similarity=0.239  Sum_probs=32.4

Q ss_pred             CcccCCCCCHhh----HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEE----LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...+.    ...+. .+ .+++++||.++.|+++|.+.+.+.+
T Consensus       107 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~l~~~l~~~~  156 (158)
T cd01879         107 ALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELA  156 (158)
T ss_pred             EEehhhhcccccchhhHHHHHHhhCCCeEEEEccCCCCHHHHHHHHHHHh
Confidence            589999875432    23332 22 2589999999999999999988764

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04163 Era Era subfamily

Probab=96.67  E-value=0.0032  Score=43.21  Aligned_cols=44  Identities=30%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             CcccCCCC-CHhhHHH----Hh-c--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQI-SIEELDI----IY-K--IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~-~~e~l~~----l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+. ..+.+..    +. .  ..+++++||.++.|+++|.+.|-+.|
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~l~~~l~~~~  168 (168)
T cd04163         117 VLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDELLEEIVKYL  168 (168)
T ss_pred             EEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChHHHHHHHHhhC
Confidence            57999988 4444332    21 2  24689999999999999999987754

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.66  E-value=0.0021  Score=51.12  Aligned_cols=47  Identities=17%  Similarity=0.191  Sum_probs=34.6

Q ss_pred             CcccCCCCCHhhH-----------HHH-hc---C-CCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISIEEL-----------DII-YK---I-PHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~e~l-----------~~l-~~---~-~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+...+..           ..+ .+   . ++++++||.++.|+++|.+.|.+.++.+
T Consensus       178 v~NK~Dl~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~~~  240 (300)
T TIGR00750       178 VVNKADGEGATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKTFL  240 (300)
T ss_pred             EEEcccccchhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHHHH
Confidence            5899999855421           111 11   1 3589999999999999999999987643

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>cd01863 Rab18 Rab18 subfamily

Probab=96.66  E-value=0.0034  Score=43.91  Aligned_cols=44  Identities=16%  Similarity=0.034  Sum_probs=31.3

Q ss_pred             CcccCCCCCH----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...    ++...+.  ..-..+++||.+|.|++++++.+.+.+
T Consensus       112 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~~~~~~  161 (161)
T cd01863         112 VGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGVQQAFEELVEKI  161 (161)
T ss_pred             EEECCcccccccCHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            5799998722    3333332  112488999999999999999887653

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>cd04157 Arl6 Arl6 subfamily

Probab=96.63  E-value=0.0019  Score=45.08  Aligned_cols=42  Identities=12%  Similarity=0.129  Sum_probs=28.6

Q ss_pred             CcccCCCCCH---hhHHHHhcC------C-CeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISI---EELDIIYKI------P-HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l~~~------~-~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+...   +++......      + .++++||++|.|++++.+.|.+
T Consensus       110 v~NK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         110 FANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EEeCccccCCCCHHHHHHHhCCccccCceEEEEEeeCCCCCchHHHHHHHhc
Confidence            5899998743   223222111      1 2678999999999999988754

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=96.61  E-value=0.0036  Score=43.56  Aligned_cols=44  Identities=9%  Similarity=0.046  Sum_probs=31.5

Q ss_pred             CcccCCCCC-----HhhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS-----IEELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+..     .++...+ ... ...+.+||.++.|+++|.+.+.+.|
T Consensus       116 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         116 CANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             EEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999862     2223223 222 2478999999999999999998764

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=96.60  E-value=0.0021  Score=54.12  Aligned_cols=45  Identities=18%  Similarity=0.064  Sum_probs=34.5

Q ss_pred             CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+..... .......+++||++|.|+++|.+.|.+.+..
T Consensus       327 V~NK~DL~~~~~~~-~~~~~~~i~iSAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        327 VLNKADLTGEIDLE-EENGKPVIRISAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EEEhhhccccchhh-hccCCceEEEEeeCCCCHHHHHHHHHHHHhh
Confidence            68999987554332 1122358999999999999999999998753

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=96.57  E-value=0.0032  Score=45.59  Aligned_cols=44  Identities=14%  Similarity=-0.057  Sum_probs=30.2

Q ss_pred             CcccCCCCCH---hhHHHHhc-------CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI---EELDIIYK-------IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l~~-------~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...   +++.....       ....+++||++|.|++++.+.|.+.+
T Consensus       120 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  173 (175)
T smart00177      120 FANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATSGDGLYEGLTWLSNNL  173 (175)
T ss_pred             EEeCcCcccCCCHHHHHHHhCccccCCCcEEEEEeeCCCCCCHHHHHHHHHHHh
Confidence            5899998632   33332211       11355799999999999999887764

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=96.55  E-value=0.004  Score=45.96  Aligned_cols=45  Identities=13%  Similarity=0.135  Sum_probs=33.4

Q ss_pred             CcccCCCC-----CHhhHHHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQI-----SIEELDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~-----~~e~l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+.     ..+++..+. .  +...+.+||++|.|++++.+.+.+.+-
T Consensus       116 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~  168 (201)
T cd04107         116 LANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEGINIEEAMRFLVKNIL  168 (201)
T ss_pred             EEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            57999985     233444442 2  235889999999999999999988763

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PRK12289 GTPase RsgA; Reviewed

Probab=96.54  E-value=0.002  Score=52.93  Aligned_cols=43  Identities=16%  Similarity=0.109  Sum_probs=31.3

Q ss_pred             CcccCCCCCHhhHHHH----hcC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEELDII----YKI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+++.+++..+    ... -.++++||.++.|+++|.+.+...
T Consensus       126 VlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~k  173 (352)
T PRK12289        126 CLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNK  173 (352)
T ss_pred             EEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccc
Confidence            6899999876543322    121 148899999999999998887653

>cd04165 GTPBP1_like GTPBP1-like

Probab=96.54  E-value=0.0033  Score=48.21  Aligned_cols=22  Identities=14%  Similarity=-0.118  Sum_probs=19.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      +++++||.+|+|+++|.+.+..
T Consensus       199 pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         199 PIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             cEEEeeCCCccCHHHHHHHHHh
Confidence            5778999999999999987754

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>cd01860 Rab5_related Rab5-related subfamily

Probab=96.51  E-value=0.0049  Score=43.06  Aligned_cols=44  Identities=20%  Similarity=0.074  Sum_probs=32.0

Q ss_pred             CcccCCCCCH-----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.+.     ++...+ .. ....+++||.+|.|+++|++.+.+.|
T Consensus       112 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         112 VGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4699998732     233333 21 23489999999999999999998875

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=96.49  E-value=0.0024  Score=50.18  Aligned_cols=47  Identities=9%  Similarity=0.027  Sum_probs=35.2

Q ss_pred             CcccCCCCCHhhHHH----Hhc-CCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISIEELDI----IYK-IPHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l~~-~~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+++.+....    +.. ...++++||.++.|+++|++.+.+.++..
T Consensus        54 VlNK~DL~~~~~~~~~~~~~~~~~~~vi~iSa~~~~gi~~L~~~i~~~~~~~  105 (276)
T TIGR03596        54 VLNKADLADPAVTKQWLKYFEEKGIKALAINAKKGKGVKKIIKAAKKLLKEK  105 (276)
T ss_pred             EEEccccCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHHh
Confidence            689999976653332    222 12579999999999999999999887653

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=96.49  E-value=0.0043  Score=43.48  Aligned_cols=45  Identities=18%  Similarity=0.090  Sum_probs=32.2

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     +....+. . ....+++||+++.|+++|.+.+.+.+.
T Consensus       111 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  162 (164)
T smart00173      111 VGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREIR  162 (164)
T ss_pred             EEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHHHHHHHHHHh
Confidence            5799998642     2223332 2 135799999999999999999987653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd04136 Rap_like Rap-like subfamily

Probab=96.48  E-value=0.0041  Score=43.39  Aligned_cols=44  Identities=16%  Similarity=0.107  Sum_probs=31.3

Q ss_pred             CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....     +...+. .+ .+.+++||++|.|+++|.+.+.+.+
T Consensus       112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         112 VGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             EEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHhc
Confidence            57999986432     222332 22 2478999999999999999987754

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>cd01865 Rab3 Rab3 subfamily

Probab=96.48  E-value=0.004  Score=44.14  Aligned_cols=44  Identities=14%  Similarity=0.171  Sum_probs=31.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. ... ..+.+||+++.|+++|.+.+.+.+
T Consensus       112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  162 (165)
T cd01865         112 VGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQVFERLVDII  162 (165)
T ss_pred             EEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5799998643     2223332 222 488999999999999999998765

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04127 Rab27A Rab27a subfamily

Probab=96.48  E-value=0.0046  Score=44.16  Aligned_cols=44  Identities=16%  Similarity=0.145  Sum_probs=31.7

Q ss_pred             CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .+. +.+.+||++|.|+++|.+.+.+.+
T Consensus       126 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~l~~~l~~~~  176 (180)
T cd04127         126 CGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEKAVERLLDLV  176 (180)
T ss_pred             EEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799998642     2333342 222 478999999999999999988754

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=96.46  E-value=0.0046  Score=50.77  Aligned_cols=45  Identities=18%  Similarity=0.131  Sum_probs=32.2

Q ss_pred             CcccCCCC-CHhhHHH----Hh------cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQI-SIEELDI----IY------KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~-~~e~l~~----l~------~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|++ +.+..+.    +.      .+.+++++||++|.|+++|.+.+.+.+.
T Consensus       289 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~  344 (429)
T TIGR03594       289 VVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTGQGVDKLLDAIDEVYE  344 (429)
T ss_pred             EEECcccCCCHHHHHHHHHHHHHhcccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            58999998 4433222    21      1236899999999999999888777654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=96.46  E-value=0.0058  Score=44.26  Aligned_cols=45  Identities=16%  Similarity=0.168  Sum_probs=33.9

Q ss_pred             CcccCCCCCHhhHHH----H----hc-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDI----I----YK-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l----~~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ++||+|+++..+.+.    +    .. ....+++||+++.|+++|.+.|.+.|.
T Consensus       141 v~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~  194 (196)
T PRK00454        141 VLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA  194 (196)
T ss_pred             EEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence            579999986543221    2    11 346899999999999999999988774

>PF03658 Ub-RnfH: RnfH family Ubiquitin; InterPro: IPR005346 This is a small family of proteins of unknown function

Probab=96.45  E-value=0.01  Score=39.60  Aligned_cols=59  Identities=22%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             EEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcce-------eEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927          49 IYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKY-------ALVWGSSVKHQPQKVGKEHVLNDEDVVQIV  120 (123)
Q Consensus        49 vytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~-------A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~  120 (123)
                      +|..+..+   ....+-||.| +|+.++...  +.+.+.|--       -=|||+       .+..|++|+|||-|+|.
T Consensus         6 ~yA~p~~q---~~~~l~vp~G-tTv~~Ai~~--Sgi~~~~p~idl~~~~vGIfGk-------~~~~d~~L~~GDRVEIY   71 (84)
T PF03658_consen    6 AYALPERQ---VILTLEVPEG-TTVAQAIEA--SGILEQFPEIDLEKNKVGIFGK-------LVKLDTVLRDGDRVEIY   71 (84)
T ss_dssp             EEEETTCE---EEEEEEEETT--BHHHHHHH--HTHHHH-TT--TTTSEEEEEE--------S--TT-B--TT-EEEEE
T ss_pred             EEECCCeE---EEEEEECCCc-CcHHHHHHH--cCchhhCcccCcccceeeeeee-------EcCCCCcCCCCCEEEEe
Confidence            45544332   4557889998 999999654  445544421       124663       45689999999999995

; PDB: 2HJ1_B.

>cd04112 Rab26 Rab26 subfamily

Probab=96.44  E-value=0.0054  Score=44.88  Aligned_cols=48  Identities=15%  Similarity=0.081  Sum_probs=35.0

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhccce
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTR   48 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~ir   48 (123)
                      |+||+|+...     ++...+. .+ ...+++||.+|.|+++|.+.+.+.+...+
T Consensus       112 v~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~~l~~~l~~~~~~~~  166 (191)
T cd04112         112 LGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRK  166 (191)
T ss_pred             EEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            5799998632     3334442 22 25899999999999999999998876543

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>PLN00223 ADP-ribosylation factor; Provisional

Probab=96.42  E-value=0.0045  Score=45.30  Aligned_cols=44  Identities=9%  Similarity=-0.026  Sum_probs=30.1

Q ss_pred             CcccCCCCCH---hhHHHHhcCC-------CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI---EELDIIYKIP-------HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l~~~~-------~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...   +++......+       ..+++||++|+|++++.+.+.+.+
T Consensus       124 v~NK~Dl~~~~~~~~~~~~l~l~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~~  177 (181)
T PLN00223        124 FANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI  177 (181)
T ss_pred             EEECCCCCCCCCHHHHHHHhCccccCCCceEEEeccCCCCCCHHHHHHHHHHHH
Confidence            5799998643   2332221111       244689999999999999988765

>PTZ00099 rab6; Provisional

Probab=96.41  E-value=0.0064  Score=44.69  Aligned_cols=48  Identities=19%  Similarity=0.015  Sum_probs=34.5

Q ss_pred             CcccCCCCCH-----hhHHHH-hcCC-CeEEEeecCCcChHHHHHHHHHhhccce
Q psy2927           1 MQKVSDQISI-----EELDII-YKIP-HCVPLSAHHKWNFDDLLEKMWEYLKLTR   48 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~~-~~v~ISA~~~~gld~L~e~i~~~L~~ir   48 (123)
                      |.||+|+...     ++...+ ..+. ..+.+||++|.|++++.+.|.+.+...+
T Consensus        91 VgNK~DL~~~~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~~  145 (176)
T PTZ00099         91 VGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD  145 (176)
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            5799998532     232232 2222 3678999999999999999999887654

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=96.41  E-value=0.0032  Score=44.29  Aligned_cols=42  Identities=17%  Similarity=0.094  Sum_probs=29.0

Q ss_pred             CcccCCCCCHh---hHHHH-hc--------CCCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIE---ELDII-YK--------IPHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l-~~--------~~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+....   ++..+ ..        ....+++||++|.|++++.+.|.+
T Consensus       113 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         113 LANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             EEEccccccCCCHHHHHHHhccccccccCCceEEEEeeCCCCcCHHHHHHHHhc
Confidence            58999986442   22222 11        114789999999999999887754

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd04154 Arl2 Arl2 subfamily

Probab=96.40  E-value=0.0019  Score=46.21  Aligned_cols=42  Identities=14%  Similarity=0.026  Sum_probs=29.2

Q ss_pred             CcccCCCCCH---hhHHHHhc-------CCCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISI---EELDIIYK-------IPHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l~~-------~~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+...   +++.....       ..+.+++||++|.|+++|.+.+.+
T Consensus       121 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         121 LANKQDLPGALSEEEIREALELDKISSHHWRIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             EEECcccccCCCHHHHHHHhCccccCCCceEEEeccCCCCcCHHHHHHHHhc
Confidence            5799998642   33333211       114888999999999999887753

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>cd00880 Era_like Era (E

Probab=96.40  E-value=0.0063  Score=40.96  Aligned_cols=44  Identities=23%  Similarity=0.157  Sum_probs=32.5

Q ss_pred             CcccCCCCCHhhHHHH--------h--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDII--------Y--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l--------~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...+.....        .  ...+++++||.++.|+++|+..+.+.+
T Consensus       110 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~v~~l~~~l~~~~  163 (163)
T cd00880         110 VLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREALIEAL  163 (163)
T ss_pred             EEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccCCHHHHHHHHHhhC
Confidence            5899999866543221        1  233689999999999999999887653

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=96.40  E-value=0.006  Score=42.58  Aligned_cols=44  Identities=16%  Similarity=0.166  Sum_probs=31.5

Q ss_pred             CcccCCCCCHh-----hHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....     +...+ ... -..+++||.+|.|+++|.+.+.+.+
T Consensus       113 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         113 VGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             EeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHHHHHHHHHhh
Confidence            57999986432     22223 121 2579999999999999999988765

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.38  E-value=0.0042  Score=46.53  Aligned_cols=43  Identities=12%  Similarity=0.029  Sum_probs=31.3

Q ss_pred             CcccCCCCCH--hhHH----HHh---cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI--EELD----IIY---KIPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~--e~l~----~l~---~~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ++||+|+.+.  ..+.    .+.   ...+++++||.++.|+++|.+.+.+.
T Consensus       154 v~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~  205 (207)
T TIGR00073       154 VINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ  205 (207)
T ss_pred             EEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            5899999753  1221    221   22468999999999999999998874

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>cd04123 Rab21 Rab21 subfamily

Probab=96.38  E-value=0.0063  Score=42.06  Aligned_cols=44  Identities=11%  Similarity=-0.002  Sum_probs=31.8

Q ss_pred             CcccCCCCCH-----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     +++..+.  .....+++||.++.|++++.+.+.+.+
T Consensus       111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         111 VGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            5899998743     2233332  122478999999999999999998764

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd04109 Rab28 Rab28 subfamily

Probab=96.38  E-value=0.0048  Score=46.21  Aligned_cols=46  Identities=11%  Similarity=-0.059  Sum_probs=33.2

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...     ++...+. .+ -..+.+||++|.|+++|.+.+.+.+..
T Consensus       115 VgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~gv~~lf~~l~~~l~~  167 (215)
T cd04109         115 VGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDRVNLLFQQLAAELLG  167 (215)
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5799998643     2233332 22 147889999999999999999987654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04144 Ras2 Ras2 subfamily

Probab=96.37  E-value=0.0045  Score=45.30  Aligned_cols=46  Identities=15%  Similarity=0.159  Sum_probs=32.6

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...     ++...+ ..+ -..+.+||.+|.|+++|.+.+.+.+..
T Consensus       112 vgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~l~~  164 (190)
T cd04144         112 VGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQ  164 (190)
T ss_pred             EEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            5799998532     222222 122 247999999999999999999987654

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01895 EngA2 EngA2 subfamily

Probab=96.37  E-value=0.0063  Score=42.26  Aligned_cols=43  Identities=21%  Similarity=0.153  Sum_probs=30.8

Q ss_pred             CcccCCCCCH--hhHH----HHh-c-----CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI--EELD----IIY-K-----IPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~--e~l~----~l~-~-----~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+...  +..+    .+. .     ...++++||+++.|++++.+.+.+.
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         119 VVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence            5799998755  3322    221 1     2358999999999999999887654

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=96.36  E-value=0.0031  Score=53.50  Aligned_cols=47  Identities=19%  Similarity=0.124  Sum_probs=36.8

Q ss_pred             CcccCCCCCHhhHHHH--hcCCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISIEELDII--YKIPHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l--~~~~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+.++.....+  ..-...+.+||++++|++.|.++|.+.+.-.
T Consensus       330 v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         330 VLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EEechhcccccccchhhccCCCceEEEEecCccCHHHHHHHHHHHHhhc
Confidence            5899999977654433  2212489999999999999999999998753

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=96.35  E-value=0.0052  Score=43.34  Aligned_cols=44  Identities=14%  Similarity=0.079  Sum_probs=31.7

Q ss_pred             CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....     +...+. .. -+.+++||.+|.|++++.+.+.+.+
T Consensus       113 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  163 (166)
T cd01869         113 VGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQAFMTMAREI  163 (166)
T ss_pred             EEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHHHHHHHHHH
Confidence            57999976432     233332 22 2589999999999999999998765

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>cd04129 Rho2 Rho2 subfamily

Probab=96.35  E-value=0.0042  Score=45.34  Aligned_cols=33  Identities=18%  Similarity=0.094  Sum_probs=26.4

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhccceEEeCCCC
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKG   55 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g   55 (123)
                      ..+.+||++|.|+++|.+.+.+.+-  -++++.||
T Consensus       149 ~~~e~Sa~~~~~v~~~f~~l~~~~~--~~~~~~~~  181 (187)
T cd04129         149 KYMECSALTGEGVDDVFEAATRAAL--LVRKSEPG  181 (187)
T ss_pred             EEEEccCCCCCCHHHHHHHHHHHHh--cccCcccc
Confidence            5788999999999999999997653  44555555

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=96.35  E-value=0.0034  Score=52.20  Aligned_cols=45  Identities=33%  Similarity=0.371  Sum_probs=33.0

Q ss_pred             CcccCCCCCHhhH----HHHh----c----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEEL----DIIY----K----IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l~----~----~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.++.    +.+.    .    ....+++||.+|+|+++|++.|.+.++
T Consensus       145 VlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~  201 (411)
T PRK04000        145 VQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIP  201 (411)
T ss_pred             EEEeeccccchhHHHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCC
Confidence            5799999864332    2221    1    124799999999999999999998764

>cd04106 Rab23_lke Rab23-like subfamily

Probab=96.35  E-value=0.0053  Score=42.86  Aligned_cols=43  Identities=21%  Similarity=0.270  Sum_probs=30.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+...     ++...+. .. -+.+++||+++.|+++|.+.+.+.
T Consensus       112 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~  161 (162)
T cd04106         112 VQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVTELFEYLAEK  161 (162)
T ss_pred             EEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHh
Confidence            5799998643     2333332 21 257899999999999999887653

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=96.33  E-value=0.0028  Score=44.25  Aligned_cols=42  Identities=19%  Similarity=0.101  Sum_probs=28.8

Q ss_pred             CcccCCCCC---HhhHHHH---hcCC-----CeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQIS---IEELDII---YKIP-----HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~---~e~l~~l---~~~~-----~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+..   .+++...   ..+.     +.+++||++|.|++++.+.|.+
T Consensus       107 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         107 LANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             EEECcccccCcCHHHHHHHcCCcccCCCCcEEEEecccccCCChHHHHHHHhc
Confidence            589999853   3333321   1111     3678999999999999988754

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>cd01861 Rab6 Rab6 subfamily

Probab=96.32  E-value=0.0062  Score=42.44  Aligned_cols=44  Identities=20%  Similarity=0.181  Sum_probs=31.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .. -..+++||.++.|+++|.+.+.+.|
T Consensus       111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~l  161 (161)
T cd01861         111 VGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVKELFRKIASAL  161 (161)
T ss_pred             EEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHhC
Confidence            5799998432     2233332 21 2478899999999999999998764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=96.31  E-value=0.0047  Score=51.14  Aligned_cols=45  Identities=31%  Similarity=0.395  Sum_probs=33.2

Q ss_pred             CcccCCCCCHhhH----HHHh----c----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEEL----DIIY----K----IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l~----~----~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+++.+..    +.+.    .    ....+++||.+|.|+++|++.+.+.++
T Consensus       140 vvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l~  196 (406)
T TIGR03680       140 VQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFIP  196 (406)
T ss_pred             EEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhCC
Confidence            5899999865432    2221    1    124789999999999999999998765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=96.28  E-value=0.0079  Score=41.41  Aligned_cols=44  Identities=20%  Similarity=0.227  Sum_probs=32.3

Q ss_pred             CcccCCCCCHhhHH----HH----h---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELD----II----Y---KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~l----~---~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.+.++..    .+    .   ..++.+++||+++.|+++|.+.|.+.+
T Consensus       116 v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~~~~~~~l~~~l~~~~  170 (170)
T cd01876         116 VLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQGIDELRALIEKWL  170 (170)
T ss_pred             EEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCCCCCHHHHHHHHHHhC
Confidence            57999997654321    11    1   124688999999999999999998764

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=96.27  E-value=0.005  Score=51.91  Aligned_cols=46  Identities=22%  Similarity=0.204  Sum_probs=33.8

Q ss_pred             CcccCCCCCHh-hHHHH--hcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE-ELDII--YKIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e-~l~~l--~~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...+ +...+  ..+...+++||.+|.|+++|++.|.+.+..
T Consensus       152 V~NK~Dl~~~~~~~~~~~~~g~~~~~~iSA~~g~gi~eL~~~i~~~l~~  200 (472)
T PRK03003        152 AANKVDDERGEADAAALWSLGLGEPHPVSALHGRGVGDLLDAVLAALPE  200 (472)
T ss_pred             EEECccCCccchhhHHHHhcCCCCeEEEEcCCCCCcHHHHHHHHhhccc
Confidence            68999986432 22222  134456899999999999999999988743

>PRK03003 GTP-binding protein Der; Reviewed

Probab=96.27  E-value=0.0063  Score=51.31  Aligned_cols=45  Identities=20%  Similarity=0.119  Sum_probs=32.5

Q ss_pred             CcccCCCCCHhh---H-HHH----h--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE---L-DII----Y--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~---l-~~l----~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...+.   + ..+    .  .+.+.+++||++|.|+++|.+.+.+.+.
T Consensus       328 V~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv~~lf~~i~~~~~  382 (472)
T PRK03003        328 AFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAVDKLVPALETALE  382 (472)
T ss_pred             EEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999975432   1 111    1  2346899999999999999999887764

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=96.25  E-value=0.0065  Score=43.06  Aligned_cols=24  Identities=13%  Similarity=0.079  Sum_probs=21.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||+++.|+++|.+.+.+.+
T Consensus       148 ~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      148 KYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHh
Confidence            478899999999999999888754

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04158 ARD1 ARD1 subfamily

Probab=96.24  E-value=0.0072  Score=43.22  Aligned_cols=45  Identities=13%  Similarity=0.098  Sum_probs=30.9

Q ss_pred             CcccCCCCC---HhhHHHHhc---C--C---CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS---IEELDIIYK---I--P---HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~---~e~l~~l~~---~--~---~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+..   .+++..+..   .  .   ..+++||++|.|++++.+.+.+.|.
T Consensus       106 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~~f~~l~~~~~  161 (169)
T cd04158         106 FANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMGLYEGLDWLSRQLV  161 (169)
T ss_pred             EEeCcCcccCCCHHHHHHHhCCccccCCCcEEEEeCcCCCCCCHHHHHHHHHHHHh
Confidence            579999853   233433321   1  1   3556899999999999999887653

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>cd04159 Arl10_like Arl10-like subfamily

Probab=96.17  E-value=0.005  Score=42.06  Aligned_cols=42  Identities=19%  Similarity=0.242  Sum_probs=29.3

Q ss_pred             CcccCCCCCHhhHH----HHh--c----CCCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIEELD----IIY--K----IPHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~l~--~----~~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+.......    .+.  .    ....+++||.+|.|++++.+.+.+
T Consensus       107 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         107 LGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             EEeCccccCCcCHHHHHHHhCcccccCCceEEEEEEeccCCChHHHHHHHhh
Confidence            57999987543222    111  1    124688999999999999998865

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>PLN03118 Rab family protein; Provisional

Probab=96.17  E-value=0.0069  Score=45.09  Aligned_cols=45  Identities=18%  Similarity=0.048  Sum_probs=32.2

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+. .. ...+++||+++.|+++|.+.+.+.+.
T Consensus       126 v~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        126 VGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIM  177 (211)
T ss_pred             EEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998633     2222231 21 24688999999999999999998873

>PRK13768 GTPase; Provisional

Probab=96.16  E-value=0.0064  Score=47.37  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=23.1

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      .++++||.++.|+++|.+.|.+.|.
T Consensus       223 ~vi~iSa~~~~gl~~L~~~I~~~l~  247 (253)
T PRK13768        223 RVIPVSAKTGEGFDELYAAIQEVFC  247 (253)
T ss_pred             cEEEEECCCCcCHHHHHHHHHHHcC
Confidence            5789999999999999999999885

>PRK00093 GTP-binding protein Der; Reviewed

Probab=96.16  E-value=0.0086  Score=49.38  Aligned_cols=44  Identities=20%  Similarity=0.135  Sum_probs=31.9

Q ss_pred             CcccCCCCCHhhHHHH----h------cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDII----Y------KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~------~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.+.+..+.+    .      .+.+++++||++|.|+++|.+.+.+..
T Consensus       290 v~NK~Dl~~~~~~~~~~~~~~~~l~~~~~~~i~~~SA~~~~gv~~l~~~i~~~~  343 (435)
T PRK00093        290 VVNKWDLVDEKTMEEFKKELRRRLPFLDYAPIVFISALTGQGVDKLLEAIDEAY  343 (435)
T ss_pred             EEECccCCCHHHHHHHHHHHHHhcccccCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5899999855432222    1      134689999999999999998877644

>cd04149 Arf6 Arf6 subfamily

Probab=96.15  E-value=0.007  Score=43.56  Aligned_cols=42  Identities=14%  Similarity=0.029  Sum_probs=28.7

Q ss_pred             CcccCCCCC---HhhHHHHh---cCC----CeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQIS---IEELDIIY---KIP----HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~---~e~l~~l~---~~~----~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+..   .+++....   ...    ..+++||++|.|++++.+.|.+
T Consensus       116 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         116 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EEECcCCccCCCHHHHHHHcCCCccCCCcEEEEEeeCCCCCChHHHHHHHhc
Confidence            589999863   34443321   111    3678999999999999887653

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=96.14  E-value=0.007  Score=53.58  Aligned_cols=46  Identities=24%  Similarity=0.187  Sum_probs=33.4

Q ss_pred             CcccCCCCCHhh---HHH-Hh------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE---LDI-IY------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~-l~------~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+.+.   ++. +.      .+.+.+++||++|.|+++|++.+.+.+..
T Consensus       567 V~NK~DL~~~~~~~~~~~~~~~~l~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~  622 (712)
T PRK09518        567 VFNKWDLMDEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAMQEALES  622 (712)
T ss_pred             EEEchhcCChhHHHHHHHHHHHhccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            689999986433   221 11      12357999999999999999988887653

>cd04140 ARHI_like ARHI subfamily

Probab=96.12  E-value=0.0083  Score=42.50  Aligned_cols=43  Identities=14%  Similarity=0.127  Sum_probs=29.8

Q ss_pred             CcccCCCCCHhh-----HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEE-----LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~-----l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||+|+....+     ...+. .+ ...+.+||++|+|+++|.+.|.++
T Consensus       114 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~~f~~l~~~  163 (165)
T cd04140         114 VGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQELFQELLNL  163 (165)
T ss_pred             EEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHHHHHHHHhc
Confidence            579999865322     11221 22 247889999999999999988653

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04155 Arl3 Arl3 subfamily

Probab=96.11  E-value=0.0057  Score=43.33  Aligned_cols=42  Identities=12%  Similarity=0.068  Sum_probs=28.4

Q ss_pred             CcccCCCCCHhhHHHH----h--cC----CCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIEELDII----Y--KI----PHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~--~~----~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      ++||+|+......+.+    .  ..    .+.+++||++|.|++++.+.|.+
T Consensus       121 v~nK~D~~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         121 FANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEECCCCccCCCHHHHHHHcCCcccCCCeEEEEEeECCCCCCHHHHHHHHhc
Confidence            4699998754322222    1  11    13578999999999999988754

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=96.10  E-value=0.007  Score=52.59  Aligned_cols=47  Identities=17%  Similarity=0.178  Sum_probs=35.0

Q ss_pred             CcccCCCCCHhhH-------HHH-hc-----CCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISIEEL-------DII-YK-----IPHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~e~l-------~~l-~~-----~~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+.+.+.+       ..+ ..     ..+++++||.+|.|+++|.+.+.+.+..+
T Consensus       109 VlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii~vSA~tG~GI~eL~~~L~~l~~~~  168 (581)
T TIGR00475       109 VITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIFKTSAKTGQGIGELKKELKNLLESL  168 (581)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEEEEeCCCCCCchhHHHHHHHHHHhC
Confidence            5899999876532       122 11     13589999999999999999998877654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>KOG1145|consensus

Probab=96.10  E-value=0.011  Score=51.66  Aligned_cols=51  Identities=18%  Similarity=0.187  Sum_probs=35.2

Q ss_pred             CcccCCCC--CHhhH-HHHh-------cC---CCeEEEeecCCcChHHHHHHHHHhhccceEEe
Q psy2927           1 MQKVSDQI--SIEEL-DIIY-------KI---PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYT   51 (123)
Q Consensus         1 V~NKiD~~--~~e~l-~~l~-------~~---~~~v~ISA~~~~gld~L~e~i~~~L~~irvyt   51 (123)
                      ++||||..  +++.+ ..|.       .+   -.+|||||++|+||+.|.+++.-.-.++-.-.
T Consensus       259 AinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~mdLkA  322 (683)
T KOG1145|consen  259 AINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVMDLKA  322 (683)
T ss_pred             EEeccCCCCCCHHHHHHHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHhhccc
Confidence            47999987  34432 3332       11   14899999999999999999887655544433

>cd01871 Rac1_like Rac1-like subfamily

Probab=96.10  E-value=0.007  Score=43.87  Aligned_cols=23  Identities=9%  Similarity=0.098  Sum_probs=19.8

Q ss_pred             CeEEEeecCCcChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ..+.+||++|+|+++|.+.+.+.
T Consensus       151 ~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         151 KYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             EEEEecccccCCHHHHHHHHHHh
Confidence            46889999999999999888764

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04176 Rap2 Rap2 subgroup

Probab=96.10  E-value=0.0073  Score=42.35  Aligned_cols=44  Identities=16%  Similarity=0.063  Sum_probs=31.1

Q ss_pred             CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+....     +...+. .+ -..+++||++|.|+++|.+.+.+.|
T Consensus       112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         112 VGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             EEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHHHHHHHHHHhc
Confidence            57999985321     222232 22 2478999999999999999988765

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=96.10  E-value=0.011  Score=41.96  Aligned_cols=44  Identities=14%  Similarity=0.093  Sum_probs=31.6

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .. ...+++||.++.|++++.+.+.+.+
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~~~~i~~~~  164 (167)
T cd01867         114 VGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEAFFTLAKDI  164 (167)
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799998732     2223331 11 2479999999999999999988765

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04124 RabL2 RabL2 subfamily

Probab=96.09  E-value=0.01  Score=42.05  Aligned_cols=44  Identities=14%  Similarity=-0.105  Sum_probs=30.7

Q ss_pred             CcccCCCCCHh--hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE--ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e--~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....  +...+. .. -+.+++||++|.|+++|.+.+.+.+
T Consensus       110 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~  157 (161)
T cd04124         110 VANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLA  157 (161)
T ss_pred             EEECccCchhHHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            58999985321  122221 11 2478999999999999999988754

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd00879 Sar1 Sar1 subfamily

Probab=96.08  E-value=0.0086  Score=43.31  Aligned_cols=23  Identities=13%  Similarity=0.235  Sum_probs=20.4

Q ss_pred             eEEEeecCCcChHHHHHHHHHhh
Q psy2927          22 CVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        22 ~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      .+++||++|+|++++.+.+.+.|
T Consensus       168 ~~~~Sa~~~~gv~e~~~~l~~~~  190 (190)
T cd00879         168 VFMCSVVKRQGYGEAFRWLSQYL  190 (190)
T ss_pred             EEEeEecCCCChHHHHHHHHhhC
Confidence            68899999999999999987754

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd04128 Spg1 Spg1p

Probab=96.06  E-value=0.0079  Score=44.11  Aligned_cols=45  Identities=11%  Similarity=0.050  Sum_probs=31.0

Q ss_pred             CcccCCCCC----Hh------hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS----IE------ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~----~e------~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+..    .+      +...+. .. ...+++||++|.|+++|.+.+.+.+-
T Consensus       110 VgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g~~v~~lf~~l~~~l~  166 (182)
T cd04128         110 VGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHSINVQKIFKIVLAKAF  166 (182)
T ss_pred             EEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            579999852    11      112221 22 24788999999999999999887663

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>cd04143 Rhes_like Rhes_like subfamily

Probab=96.06  E-value=0.0098  Score=46.16  Aligned_cols=45  Identities=16%  Similarity=0.187  Sum_probs=32.8

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     +++..+ ...  ...+++||+++.|+++|.+.|.+.+.
T Consensus       119 vgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~evSAktg~gI~elf~~L~~~~~  171 (247)
T cd04143         119 CGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMFRALFSLAK  171 (247)
T ss_pred             EEECccchhccccCHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence            5799998632     233333 211  24799999999999999999998764

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=96.06  E-value=0.0068  Score=43.09  Aligned_cols=42  Identities=10%  Similarity=-0.023  Sum_probs=27.5

Q ss_pred             CcccCCCCCH---hhHH-HHh--cCC----CeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISI---EELD-IIY--KIP----HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~---e~l~-~l~--~~~----~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+...   +++. .+.  ...    ..+++||++|.|++++.+.|.+
T Consensus       107 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         107 FANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             EEECCCCCCCCCHHHHHHHhCccccCCCCEEEEEeeCCCCCCHHHHHHHHhc
Confidence            5799998632   2322 221  111    2457999999999999887753

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=96.06  E-value=0.01  Score=42.43  Aligned_cols=47  Identities=19%  Similarity=0.125  Sum_probs=33.9

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+...     ++...+. .+ ..++++||.++.|++++.+.+.+.+...
T Consensus       112 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  165 (180)
T cd04137         112 VGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEEAFELLIEEIEKV  165 (180)
T ss_pred             EEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            5799998632     2233332 22 2578999999999999999999887643

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PRK05433 GTP-binding protein LepA; Provisional

Probab=96.05  E-value=0.0088  Score=52.22  Aligned_cols=45  Identities=22%  Similarity=0.203  Sum_probs=32.9

Q ss_pred             CcccCCCCCH--hh-HHHHh---cCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI--EE-LDIIY---KIP--HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~--e~-l~~l~---~~~--~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...  +. .+.+.   ..+  +++++||.+|.|+++|++.|.+.++
T Consensus       132 ViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp  184 (600)
T PRK05433        132 VLNKIDLPAADPERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIP  184 (600)
T ss_pred             EEECCCCCcccHHHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCc
Confidence            5899998632  21 22331   222  4899999999999999999998875

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=96.04  E-value=0.0086  Score=47.37  Aligned_cols=46  Identities=15%  Similarity=0.060  Sum_probs=34.5

Q ss_pred             CcccCCCCCHhhHHHH----hc-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDII----YK-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+.+..+..    .. ...++++||.++.|+++|++.+.+.++.
T Consensus        57 VlNK~DL~~~~~~~~~~~~~~~~~~~vi~vSa~~~~gi~~L~~~l~~~l~~  107 (287)
T PRK09563         57 ILNKSDLADPEVTKKWIEYFEEQGIKALAINAKKGQGVKKILKAAKKLLKE  107 (287)
T ss_pred             EEEchhcCCHHHHHHHHHHHHHcCCeEEEEECCCcccHHHHHHHHHHHHHH
Confidence            6899998766433222    12 1247999999999999999999888764

>PRK12288 GTPase RsgA; Reviewed

Probab=96.03  E-value=0.015  Score=47.69  Aligned_cols=43  Identities=14%  Similarity=0.093  Sum_probs=31.0

Q ss_pred             CcccCCCCCHhh---HHHH-h---cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEE---LDII-Y---KI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~l-~---~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+++.++   +... .   .. -.++++||.++.|+++|.+.+...
T Consensus       156 VlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~k  206 (347)
T PRK12288        156 VLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTGR  206 (347)
T ss_pred             EEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhhC
Confidence            689999986432   2221 1   21 258899999999999999988764

>cd01893 Miro1 Miro1 subfamily

Probab=95.99  E-value=0.0076  Score=42.82  Aligned_cols=44  Identities=18%  Similarity=0.128  Sum_probs=31.5

Q ss_pred             CcccCCCCCHhh-------HHHH-hcC---CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEE-------LDII-YKI---PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~-------l~~l-~~~---~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.+...       +..+ ..+   ...+.+||.++.|+++|.+.+.+.+
T Consensus       109 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         109 VGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             EEEchhcccccchhHHHHHHHHHHHHHhcccEEEEeccccccCHHHHHHHHHHHh
Confidence            579999874322       2222 122   3578899999999999999988765

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04116 Rab9 Rab9 subfamily

Probab=95.98  E-value=0.013  Score=41.36  Aligned_cols=43  Identities=16%  Similarity=0.018  Sum_probs=31.2

Q ss_pred             CcccCCCCC----HhhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQIS----IEELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~----~e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||+|+..    .+++.++ ..+  ...+++||.+|.|++++.+.+.+.
T Consensus       120 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         120 LGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             EEECccccccccCHHHHHHHHHHCCCCeEEEEECCCCCCHHHHHHHHHhh
Confidence            579999853    2334444 222  357899999999999999888764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>cd04114 Rab30 Rab30 subfamily

Probab=95.97  E-value=0.007  Score=42.61  Aligned_cols=44  Identities=16%  Similarity=0.005  Sum_probs=31.1

Q ss_pred             CcccCCCCCHhh-----HHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEE-----LDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~-----l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....+     ...+. . ....+.+||.+|.|+++|.+.|.+.+
T Consensus       118 v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  168 (169)
T cd04114         118 VGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL  168 (169)
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHh
Confidence            579999864322     12221 1 13478999999999999999988753

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=95.95  E-value=0.011  Score=41.35  Aligned_cols=24  Identities=38%  Similarity=0.405  Sum_probs=21.3

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||.+|+|+++|.+.+.+..
T Consensus       142 ~~~~~Sa~~~~gi~~l~~~l~~~~  165 (168)
T cd01887         142 QIVPTSAKTGEGIDDLLEAILLLA  165 (168)
T ss_pred             cEEEeecccCCCHHHHHHHHHHhh
Confidence            589999999999999999988754

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01868 Rab11_like Rab11-like

Probab=95.95  E-value=0.014  Score=41.04  Aligned_cols=44  Identities=18%  Similarity=0.165  Sum_probs=31.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .. -..+++||++|.|+++|.+.+.+.+
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         114 VGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             EEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            5799998643     2233332 21 2488999999999999999987654

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>TIGR01393 lepA GTP-binding protein LepA

Probab=95.94  E-value=0.01  Score=51.77  Aligned_cols=45  Identities=18%  Similarity=0.155  Sum_probs=32.8

Q ss_pred             CcccCCCCCH--hh-HHHHh---cCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI--EE-LDIIY---KIP--HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~--e~-l~~l~---~~~--~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...  +. .+.+.   ..+  +++++||++|.|+++|++.|.+.++
T Consensus       128 ViNKiDl~~~~~~~~~~el~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp  180 (595)
T TIGR01393       128 VINKIDLPSADPERVKKEIEEVIGLDASEAILASAKTGIGIEEILEAIVKRVP  180 (595)
T ss_pred             EEECcCCCccCHHHHHHHHHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCC
Confidence            5899998632  22 22331   222  4799999999999999999998875

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd04118 Rab24 Rab24 subfamily

Probab=95.93  E-value=0.013  Score=42.61  Aligned_cols=44  Identities=23%  Similarity=0.257  Sum_probs=31.7

Q ss_pred             CcccCCCCCHh---------hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE---------ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e---------~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....         ++..+. .+ ...+++||+++.|+++|.+.+.+.+
T Consensus       111 v~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~i~~~~  165 (193)
T cd04118         111 CGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELFQKVAEDF  165 (193)
T ss_pred             EEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            58999986421         122321 21 3478999999999999999999876

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04126 Rab20 Rab20 subfamily

Probab=95.91  E-value=0.012  Score=45.11  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=21.2

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ..+.+||++|.|+++|.+.+.+.+-
T Consensus       166 ~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         166 MCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999988887553

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=95.89  E-value=0.016  Score=40.57  Aligned_cols=44  Identities=11%  Similarity=0.049  Sum_probs=31.3

Q ss_pred             CcccCCCCCHhh-----HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEE-----LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~-----l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.+..+     ...+. .+ -..+.+||.++.|+++|.+.+.+.+
T Consensus       113 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         113 VGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCChHHHHHHHHHHh
Confidence            579999864422     12222 22 2478999999999999999988754

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=95.89  E-value=0.011  Score=42.73  Aligned_cols=44  Identities=18%  Similarity=0.086  Sum_probs=30.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. ... ..+.+||++|.|++++.+.+.+.+
T Consensus       113 vgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  163 (172)
T cd04141         113 VGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDDAFHGLVREI  163 (172)
T ss_pred             EEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHHHHHHHHHHH
Confidence            5799997532     2333332 222 477899999999999998887654

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=95.88  E-value=0.0064  Score=43.77  Aligned_cols=42  Identities=14%  Similarity=0.062  Sum_probs=28.5

Q ss_pred             CcccCCCCC---HhhH-HHHh-c-CC----CeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQIS---IEEL-DIIY-K-IP----HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~---~e~l-~~l~-~-~~----~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      ++||+|+..   .+++ +.+. . ..    ..+++||.+|.|++++.+.+.+
T Consensus       122 v~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         122 LANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             EEECCCCCCCCCHHHHHHHhCcccccCCceEEEecccCCCCCHHHHHHHHhc
Confidence            579999863   2333 2221 1 11    3688999999999999887743

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=95.85  E-value=0.014  Score=39.17  Aligned_cols=41  Identities=17%  Similarity=0.153  Sum_probs=29.1

Q ss_pred             CcccCCCCCHh---hHHHH-h--cCCCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQISIE---ELDII-Y--KIPHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l-~--~~~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+....   ..... .  .....+++||..+.|+++|.+.|.
T Consensus       114 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       114 VGNKIDLRDAKLKTHVAFLFAKLNGEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             EEEcccCCcchhhHHHHHHHhhccCCceEEeecCCCCCHHHHHHHhh
Confidence            57999987632   22222 1  233589999999999999988764

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=95.84  E-value=0.011  Score=48.60  Aligned_cols=46  Identities=24%  Similarity=0.327  Sum_probs=35.5

Q ss_pred             CcccCCCCCHhh-HHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-LDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...+. ...+.  .+.+.+++||.+|.|+++|++.+.+.+..
T Consensus       113 VvNK~D~~~~~~~~~~~~~lg~~~~~~vSa~~g~gv~~ll~~i~~~l~~  161 (429)
T TIGR03594       113 VANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLPE  161 (429)
T ss_pred             EEECccCCcccccHHHHHhcCCCCeEEEeCCcCCChHHHHHHHHHhcCc
Confidence            589999875442 23332  34568999999999999999999998854

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK13796 GTPase YqeH; Provisional

Probab=95.83  E-value=0.011  Score=48.53  Aligned_cols=50  Identities=20%  Similarity=0.292  Sum_probs=34.2

Q ss_pred             CcccCCCCCH----hhHHHH----h---cC--CCeEEEeecCCcChHHHHHHHHHhhccceEE
Q psy2927           1 MQKVSDQISI----EELDII----Y---KI--PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIY   50 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l----~---~~--~~~v~ISA~~~~gld~L~e~i~~~L~~irvy   50 (123)
                      |+||+|+++.    +.+...    .   ..  .+++++||+++.|+++|.+.|.+...-.++|
T Consensus       102 ViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~  164 (365)
T PRK13796        102 VGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVY  164 (365)
T ss_pred             EEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence            6899999753    222211    1   11  2578999999999999999998875433333

>cd04122 Rab14 Rab14 subfamily

Probab=95.82  E-value=0.017  Score=40.84  Aligned_cols=44  Identities=16%  Similarity=0.045  Sum_probs=30.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. .. -..+.+||.+|.|++++.+.+.+.+
T Consensus       113 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         113 IGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             EEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5799998643     2333332 22 2478899999999999887776543

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=95.82  E-value=0.016  Score=42.27  Aligned_cols=43  Identities=14%  Similarity=0.128  Sum_probs=30.4

Q ss_pred             CcccCCCC---CHhhHHH-Hh--c-----------CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQI---SIEELDI-IY--K-----------IPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~---~~e~l~~-l~--~-----------~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+.   +.+++.. +.  .           ...++++||.+|.|++++++-+.+.
T Consensus       124 v~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      124 LGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             EEeCccccCCCCHHHHHHHcCCCcccccccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence            58999985   3444432 21  1           1137889999999999999988654

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd04148 RGK RGK subfamily

Probab=95.81  E-value=0.012  Score=44.56  Aligned_cols=52  Identities=23%  Similarity=0.173  Sum_probs=36.6

Q ss_pred             CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhccceEEeC
Q psy2927           1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTK   52 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk   52 (123)
                      |+||+|+....     +...+. .+ ...+++||.++.|+++|.+.+.+.+.+.+-.+.
T Consensus       112 V~NK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~~~~~  170 (221)
T cd04148         112 VGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRRDSKE  170 (221)
T ss_pred             EEEChhccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhhcccc
Confidence            57999986432     222332 22 247899999999999999999998876444433

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd00876 Ras Ras family

Probab=95.80  E-value=0.016  Score=39.99  Aligned_cols=43  Identities=16%  Similarity=0.118  Sum_probs=31.4

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+...     ++...+ ... .+.+++||.++.|+++|.+.|.+.
T Consensus       110 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         110 VGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             EEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHhh
Confidence            5799998752     223333 222 368999999999999999998764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd04142 RRP22 RRP22 subfamily

Probab=95.78  E-value=0.017  Score=43.07  Aligned_cols=44  Identities=16%  Similarity=0.149  Sum_probs=31.1

Q ss_pred             CcccCCCCCH-----hhHHHH-h-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-Y-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     +++..+ . . .-..+++||++|.|+++|.+.+.+.+
T Consensus       122 vgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~v~~lf~~i~~~~  173 (198)
T cd04142         122 VGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKYNWHILLLFKELLISA  173 (198)
T ss_pred             EEECccccccccccHHHHHHHHHHhcCCcEEEecCCCCCCHHHHHHHHHHHh
Confidence            5799998532     223333 2 1 12479999999999999998888643

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=95.78  E-value=0.012  Score=52.23  Aligned_cols=46  Identities=24%  Similarity=0.292  Sum_probs=34.3

Q ss_pred             CcccCCCCCHh-hHHHH--hcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE-ELDII--YKIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e-~l~~l--~~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...+ .....  ..+...++|||.+|.|+++|++.|.+.+..
T Consensus       389 V~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~GI~eLl~~i~~~l~~  437 (712)
T PRK09518        389 AVNKIDDQASEYDAAEFWKLGLGEPYPISAMHGRGVGDLLDEALDSLKV  437 (712)
T ss_pred             EEECcccccchhhHHHHHHcCCCCeEEEECCCCCCchHHHHHHHHhccc
Confidence            68999987433 22222  134467899999999999999999998753

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=95.76  E-value=0.017  Score=42.25  Aligned_cols=45  Identities=11%  Similarity=0.015  Sum_probs=30.1

Q ss_pred             CcccCCCCCH---hhHH-HHh--cCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELD-IIY--KIP----HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~-~l~--~~~----~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||.|+...   +++. .+.  ..+    ..+.+||++|.|++++.+.|.+.+.
T Consensus       124 v~NK~Dl~~~~~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg~gv~e~~~~l~~~i~  178 (182)
T PTZ00133        124 FANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATTAQGLYEGLDWLSANIK  178 (182)
T ss_pred             EEeCCCCCCCCCHHHHHHHhCCCcccCCcEEEEeeeCCCCCCHHHHHHHHHHHHH
Confidence            5799998642   3332 221  111    1346899999999999999987653

>PRK01889 GTPase RsgA; Reviewed

Probab=95.74  E-value=0.011  Score=48.48  Aligned_cols=41  Identities=12%  Similarity=-0.029  Sum_probs=29.6

Q ss_pred             CcccCCCCCHh--hHHHHhc---CCCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQISIE--ELDIIYK---IPHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~e--~l~~l~~---~~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+++..  ..+.+..   .-.++++||.++.|+++|.+.+.
T Consensus       148 VLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~  193 (356)
T PRK01889        148 VLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLS  193 (356)
T ss_pred             EEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhh
Confidence            68999998542  2333321   22589999999999999888774

>cd04147 Ras_dva Ras-dva subfamily

Probab=95.74  E-value=0.017  Score=42.56  Aligned_cols=46  Identities=13%  Similarity=0.068  Sum_probs=32.8

Q ss_pred             CcccCCCCCH-h-----hHHHH-h-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-E-----ELDII-Y-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-e-----~l~~l-~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+... .     ..... . .+ ..++.+||.+|.|+++|.+.+.+.+..
T Consensus       110 v~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  164 (198)
T cd04147         110 VGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNENVLEVFKELLRQANL  164 (198)
T ss_pred             EEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCCCCHHHHHHHHHHHhhc
Confidence            5899998652 2     11111 1 22 246889999999999999999998764

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=95.72  E-value=0.014  Score=40.70  Aligned_cols=42  Identities=21%  Similarity=0.014  Sum_probs=28.9

Q ss_pred             CcccCCCCCHh---hHHHH-hc------CCCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIE---ELDII-YK------IPHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l-~~------~~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+....   ++... ..      ..+.+++||++|.|++++.+.|.+
T Consensus       106 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         106 FANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             EeeccCCccccCHHHHHHhhChhhccCCcEEEEEeeCCCCCCHHHHHHHHhh
Confidence            57999987533   33222 11      114788999999999999887754

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=95.69  E-value=0.013  Score=41.98  Aligned_cols=44  Identities=16%  Similarity=0.070  Sum_probs=31.4

Q ss_pred             CcccCCCCCHh---hHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE---ELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+....   +...+.  .....+.+||++|.|+++|.+.+.+.+
T Consensus       110 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~  158 (166)
T cd00877         110 CGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKL  158 (166)
T ss_pred             EEEchhcccccCCHHHHHHHHHcCCEEEEEeCCCCCChHHHHHHHHHHH
Confidence            57999986322   111221  223589999999999999999998765

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd04132 Rho4_like Rho4-like subfamily

Probab=95.69  E-value=0.013  Score=42.23  Aligned_cols=45  Identities=13%  Similarity=0.039  Sum_probs=31.9

Q ss_pred             CcccCCCCCH---------hhHHHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---------EELDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---------e~l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...         ++...+. .  ....+.+||.+|.|+++|.+.+.+.+-
T Consensus       111 v~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~~~  167 (187)
T cd04132         111 VGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKTMENVEEVFDTAIEEAL  167 (187)
T ss_pred             EEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEccCCCCCCHHHHHHHHHHHHH
Confidence            5799998642         2333332 2  225789999999999999988887654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=95.63  E-value=0.014  Score=47.80  Aligned_cols=44  Identities=16%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             CcccCCCCCHh----hHHH-----Hhc--C--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE----ELDI-----IYK--I--PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~-----l~~--~--~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+++.+    .+..     ...  .  .+++++||++++|+++|.+.+.+..
T Consensus        96 V~NK~DLl~k~~~~~~~~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~~  152 (360)
T TIGR03597        96 VGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKAR  152 (360)
T ss_pred             EEEchhhCCCCCCHHHHHHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHHh
Confidence            68999987432    2221     111  2  2578899999999999999998763

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd04110 Rab35 Rab35 subfamily

Probab=95.62  E-value=0.019  Score=42.34  Aligned_cols=46  Identities=13%  Similarity=0.113  Sum_probs=32.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |.||+|+...     ++...+. .. -.++.+||.+|.|+++|.+.|.+.+-.
T Consensus       116 VgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~lf~~l~~~~~~  168 (199)
T cd04110         116 VGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMFNCITELVLR  168 (199)
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHHHHHHHHHHHH
Confidence            5799998643     2223332 22 247889999999999999999887643

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04135 Tc10 TC10 subfamily

Probab=95.59  E-value=0.018  Score=40.80  Aligned_cols=23  Identities=13%  Similarity=0.047  Sum_probs=20.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ..+.+||.+|.|+++|.+.+.+.
T Consensus       150 ~~~e~Sa~~~~gi~~~f~~~~~~  172 (174)
T cd04135         150 CYVECSALTQKGLKTVFDEAILA  172 (174)
T ss_pred             EEEEecCCcCCCHHHHHHHHHHH
Confidence            47889999999999999988764

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=95.59  E-value=0.02  Score=44.38  Aligned_cols=42  Identities=19%  Similarity=0.273  Sum_probs=29.1

Q ss_pred             CcccCCCCCHhhH-----HHHhcC-CCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIEEL-----DIIYKI-PHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e~l-----~~l~~~-~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+.+....     +.+... -.++.+||++|.|+++|.+.+.+
T Consensus        73 V~NK~DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        73 VLNKIDLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             EEECcccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcC
Confidence            6899999754322     122222 24788999999999998887654

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>smart00175 RAB Rab subfamily of small GTPases

Probab=95.58  E-value=0.023  Score=39.50  Aligned_cols=44  Identities=18%  Similarity=0.114  Sum_probs=32.1

Q ss_pred             CcccCCCCCH-----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     +....+ .. .-..+++||.++.|+++|.+.|.+.+
T Consensus       111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~l~~~i~~~~  161 (164)
T smart00175      111 VGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREI  161 (164)
T ss_pred             EEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799998652     223333 21 12489999999999999999998876

Rab GTPases are implicated in vesicle trafficking.

>cd04133 Rop_like Rop subfamily

Probab=95.57  E-value=0.016  Score=42.56  Aligned_cols=44  Identities=9%  Similarity=0.089  Sum_probs=31.3

Q ss_pred             CcccCCCCC---------------HhhHHHHh-cCC--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS---------------IEELDIIY-KIP--HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~---------------~e~l~~l~-~~~--~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+.+               .++...++ ...  ..+.+||++|.|++++.+.+.+.+
T Consensus       111 vgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         111 VGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             EEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCcccCHHHHHHHHHHHH
Confidence            579999843               22333342 222  368899999999999999998865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>cd04125 RabA_like RabA-like subfamily

Probab=95.48  E-value=0.029  Score=40.65  Aligned_cols=45  Identities=11%  Similarity=0.091  Sum_probs=31.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. .. -..+.+||+++.|+++|.+.+.+.+-
T Consensus       111 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~~~f~~l~~~~~  162 (188)
T cd04125         111 VANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVEEAFILLVKLII  162 (188)
T ss_pred             EEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998733     2222332 11 15889999999999998888877653

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=95.47  E-value=0.023  Score=40.89  Aligned_cols=44  Identities=11%  Similarity=0.011  Sum_probs=31.1

Q ss_pred             CcccCCCCCHhh-------HHHH-hcCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEE-------LDII-YKIP-HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~-------l~~l-~~~~-~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+.+...       ...+ ..+. ..+.+||.+|.|+++|.+.+.+.+
T Consensus       112 VgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~v~~lf~~l~~~~  164 (170)
T cd04108         112 VGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGENVREFFFRVAALT  164 (170)
T ss_pred             EEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999864321       1122 2222 468899999999999999988875

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>PRK00093 GTP-binding protein Der; Reviewed

Probab=95.46  E-value=0.022  Score=47.00  Aligned_cols=45  Identities=24%  Similarity=0.294  Sum_probs=33.2

Q ss_pred             CcccCCCCCH-hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|.... +....+.  .+.+.+++||.+|.|+++|.+.+.+.+.
T Consensus       115 v~NK~D~~~~~~~~~~~~~lg~~~~~~iSa~~g~gv~~l~~~I~~~~~  162 (435)
T PRK00093        115 VVNKVDGPDEEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEELP  162 (435)
T ss_pred             EEECccCccchhhHHHHHhcCCCCCEEEEeeCCCCHHHHHHHHHhhCC
Confidence            5899997643 2333332  3446899999999999999999988543

>cd01866 Rab2 Rab2 subfamily

Probab=95.46  E-value=0.029  Score=39.89  Aligned_cols=44  Identities=16%  Similarity=0.018  Sum_probs=31.0

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. . .-..+++||..++|++++.+.+.+.+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~~~~~~~~~  165 (168)
T cd01866         115 IGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEAFINTAKEI  165 (168)
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799998732     2233331 2 22578899999999999988877664

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd01854 YjeQ_engC YjeQ/EngC

Probab=95.45  E-value=0.02  Score=45.35  Aligned_cols=42  Identities=19%  Similarity=0.128  Sum_probs=29.2

Q ss_pred             CcccCCCCCHhh-HHHH---hcC-CCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIEE-LDII---YKI-PHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l---~~~-~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+.+..+ ....   ... -.++++||.++.|+++|.+.+..
T Consensus       115 VlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~  161 (287)
T cd01854         115 VLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKG  161 (287)
T ss_pred             EEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhcc
Confidence            689999876532 1111   121 25789999999999998887654

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK00098 GTPase RsgA; Reviewed

Probab=95.42  E-value=0.022  Score=45.39  Aligned_cols=41  Identities=22%  Similarity=0.207  Sum_probs=28.0

Q ss_pred             CcccCCCC-CHhhHHHH----hcC-CCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQI-SIEELDII----YKI-PHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~-~~e~l~~l----~~~-~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+. +.+....+    ... -.++++||.++.|+++|.+.+.
T Consensus       117 VlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~  163 (298)
T PRK00098        117 VLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLA  163 (298)
T ss_pred             EEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhcc
Confidence            68999987 33332222    121 2478999999999999877664

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=95.37  E-value=0.016  Score=44.36  Aligned_cols=44  Identities=9%  Similarity=0.019  Sum_probs=31.6

Q ss_pred             CcccCCCCCHhh--HHHH----h---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEE--LDII----Y---KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~--l~~l----~---~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+++.-.  ++..    .   ...+++++|+++|+|++++++.+...+
T Consensus       148 VInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         148 VINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             EEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            689999986532  2322    1   223689999999999999988776543

>cd04120 Rab12 Rab12 subfamily

Probab=95.35  E-value=0.026  Score=42.45  Aligned_cols=44  Identities=16%  Similarity=0.173  Sum_probs=30.7

Q ss_pred             CcccCCCCCHh-----hHHHHh-cC--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+....     +.+.+. +.  -..+.+||++|.|++++.+.+.+.+
T Consensus       111 VgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~gV~e~F~~l~~~~  162 (202)
T cd04120         111 VGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI  162 (202)
T ss_pred             EEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            57999986432     222332 21  2377899999999999988887765

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=95.32  E-value=0.018  Score=49.61  Aligned_cols=45  Identities=20%  Similarity=0.203  Sum_probs=30.8

Q ss_pred             CcccCCCCCH--hhH-HHHh-------cCC---CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI--EEL-DIIY-------KIP---HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~--e~l-~~l~-------~~~---~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ++||||.++.  +.+ .++.       .+.   ..||+||++|+|+++|++.+.-.-+
T Consensus       113 AiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~tg~Gi~eLL~~ill~ae  170 (509)
T COG0532         113 AINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKTGEGIDELLELILLLAE  170 (509)
T ss_pred             EEecccCCCCCHHHHHHHHHHcCCCHhhcCCceEEEEeeccCCCCHHHHHHHHHHHHH
Confidence            4799999833  221 2232       122   3799999999999999998865443

>cd04111 Rab39 Rab39 subfamily

Probab=95.32  E-value=0.026  Score=42.37  Aligned_cols=45  Identities=18%  Similarity=0.143  Sum_probs=32.2

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+. .+ -..+.+||++|.|++++.+.|.+.+.
T Consensus       115 vgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~~  166 (211)
T cd04111         115 VGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIY  166 (211)
T ss_pred             EEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4799998643     2333332 22 24788999999999999999887653

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=95.28  E-value=0.026  Score=40.33  Aligned_cols=21  Identities=14%  Similarity=0.232  Sum_probs=18.7

Q ss_pred             CeEEEeecCCcChHHHHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~   41 (123)
                      ..+++||++|.|+++|.+.+.
T Consensus       150 ~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         150 EYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             eEEEEeCCCCCCHHHHHHHHH
Confidence            688999999999999988764

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>PLN03110 Rab GTPase; Provisional

Probab=95.27  E-value=0.029  Score=42.20  Aligned_cols=46  Identities=15%  Similarity=0.048  Sum_probs=32.9

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...     ++...+. .+ -..+.+||.++.|+++|.+.+.+.+..
T Consensus       123 v~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        123 AGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             EEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5799997532     2333332 22 248889999999999999999887755

>cd00157 Rho Rho (Ras homology) family

Probab=95.27  E-value=0.015  Score=40.85  Aligned_cols=22  Identities=14%  Similarity=0.116  Sum_probs=19.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      ..+.+||+++.|+++|.+.|.+
T Consensus       149 ~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         149 GYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             EEEEeecCCCCCHHHHHHHHhh
Confidence            5788999999999999988764

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd00154 Rab Rab family

Probab=95.25  E-value=0.03  Score=38.04  Aligned_cols=41  Identities=17%  Similarity=0.055  Sum_probs=29.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+..+     +++..+. . ..+++.+||.++.|++++.+.|.
T Consensus       111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         111 VGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEELFQSLA  158 (159)
T ss_pred             EEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHh
Confidence            5799998622     2333332 2 23689999999999999998875

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>cd01870 RhoA_like RhoA-like subfamily

Probab=95.25  E-value=0.023  Score=40.21  Aligned_cols=23  Identities=17%  Similarity=0.066  Sum_probs=20.4

Q ss_pred             CeEEEeecCCcChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ..+++||++|.|+++|.+.+.+.
T Consensus       151 ~~~~~Sa~~~~~v~~lf~~l~~~  173 (175)
T cd01870         151 GYMECSAKTKEGVREVFEMATRA  173 (175)
T ss_pred             EEEEeccccCcCHHHHHHHHHHH
Confidence            57889999999999999988764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd01875 RhoG RhoG subfamily

Probab=95.25  E-value=0.026  Score=41.48  Aligned_cols=24  Identities=8%  Similarity=0.079  Sum_probs=21.4

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+.+||++|.|++++.+.+.+.+
T Consensus       153 ~~~e~SAk~g~~v~e~f~~l~~~~  176 (191)
T cd01875         153 KYLECSALNQDGVKEVFAEAVRAV  176 (191)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHH
Confidence            478899999999999999998866

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=95.23  E-value=0.015  Score=50.66  Aligned_cols=44  Identities=14%  Similarity=0.228  Sum_probs=32.3

Q ss_pred             CcccCCCCCHh----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....    +.+.+. .. -+++++||++|.|+++|.+.+.+..
T Consensus       105 VlNK~Dl~~~~~i~~d~~~L~~~lg~pvv~tSA~tg~Gi~eL~~~i~~~~  154 (591)
T TIGR00437       105 ALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIERLKDAIRKAI  154 (591)
T ss_pred             EEehhHHHHhCCChhhHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999986332    233442 22 2589999999999999999998764

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>cd04113 Rab4 Rab4 subfamily

Probab=95.17  E-value=0.036  Score=38.68  Aligned_cols=43  Identities=16%  Similarity=-0.014  Sum_probs=30.5

Q ss_pred             CcccCCCCCHh-----hHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIE-----ELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+....     +...+ ... ...+.+||.++.|++++.+.+.+.
T Consensus       111 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         111 VGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             EEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            57999986432     22333 222 358889999999999999988764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd04117 Rab15 Rab15 subfamily

Probab=95.17  E-value=0.039  Score=39.05  Aligned_cols=43  Identities=14%  Similarity=0.118  Sum_probs=30.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||+|+...     ++...+. .. .+.+++||+++.|++++.+.|.+.
T Consensus       111 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         111 IGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHhh
Confidence            5799998633     2223332 11 357899999999999999988764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04121 Rab40 Rab40 subfamily

Probab=95.01  E-value=0.038  Score=41.04  Aligned_cols=44  Identities=7%  Similarity=0.038  Sum_probs=31.9

Q ss_pred             CcccCCCCC-----HhhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS-----IEELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+..     .++...+. ... ..+.+||++|.|++++.+.+.+.+
T Consensus       116 VGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~F~~l~~~i  166 (189)
T cd04121         116 VGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELARIV  166 (189)
T ss_pred             EEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            579999753     33444442 222 478899999999999999888755

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PTZ00369 Ras-like protein; Provisional

Probab=94.93  E-value=0.043  Score=40.03  Aligned_cols=45  Identities=16%  Similarity=0.099  Sum_probs=31.1

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+ ..+ .+.+.+||.+|.|++++.+.+.+.+.
T Consensus       116 v~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~~~~~l~~~l~  167 (189)
T PTZ00369        116 VGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIR  167 (189)
T ss_pred             EEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            5799997532     122222 122 24789999999999999988887663

>COG1160 Predicted GTPases [General function prediction only]

Probab=94.89  E-value=0.038  Score=46.90  Aligned_cols=45  Identities=18%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             CcccCCCCCHh--hHH----HH-h-----cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE--ELD----II-Y-----KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e--~l~----~l-~-----~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||-|++..+  ..+    .+ .     .+.+.++|||.+|.|++.|.+.+.+...
T Consensus       295 vvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~~i~~l~~~i~~~~~  351 (444)
T COG1160         295 VVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQGLDKLFEAIKEIYE  351 (444)
T ss_pred             EEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCCChHHHHHHHHHHHH
Confidence            68999998642  222    12 1     3457899999999999988877766543

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=94.86  E-value=0.017  Score=43.58  Aligned_cols=14  Identities=21%  Similarity=0.188  Sum_probs=12.7

Q ss_pred             CeEEEeecCCcChH
Q psy2927          21 HCVPLSAHHKWNFD   34 (123)
Q Consensus        21 ~~v~ISA~~~~gld   34 (123)
                      .++++||.+|+|++
T Consensus       181 ~ii~iSA~tg~gi~  194 (219)
T cd01883         181 PFIPISGLTGDNLI  194 (219)
T ss_pred             eEEEeecCcCCCCC
Confidence            48999999999997

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04134 Rho3 Rho3 subfamily

Probab=94.78  E-value=0.031  Score=40.81  Aligned_cols=24  Identities=8%  Similarity=0.051  Sum_probs=21.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+.+||++|.|++++.+.+.+.+
T Consensus       150 ~~~e~SAk~~~~v~e~f~~l~~~~  173 (189)
T cd04134         150 RYLECSAKLNRGVNEAFTEAARVA  173 (189)
T ss_pred             EEEEccCCcCCCHHHHHHHHHHHH
Confidence            468899999999999998888765

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01874 Cdc42 Cdc42 subfamily

Probab=94.78  E-value=0.03  Score=40.60  Aligned_cols=22  Identities=14%  Similarity=0.145  Sum_probs=19.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      ..+.+||++|.|++++.+.+.+
T Consensus       151 ~~~e~SA~tg~~v~~~f~~~~~  172 (175)
T cd01874         151 KYVECSALTQKGLKNVFDEAIL  172 (175)
T ss_pred             EEEEecCCCCCCHHHHHHHHHH
Confidence            4788999999999999988776

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=94.76  E-value=0.041  Score=38.72  Aligned_cols=44  Identities=11%  Similarity=0.076  Sum_probs=30.5

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCC-cChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHK-WNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~-~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. . ....+.+||.++ .|++++.+.+.+.+
T Consensus       112 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         112 VGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             EEECCchHHhCccCHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHH
Confidence            5799997532     2233332 1 124788999999 59999999988765

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>cd01667 TGS_ThrRS_N TGS _ThrRS_N: ThrRS (threonyl-tRNA Synthetase) is a class II tRNA synthetase that couples threonine to its cognate tRNA

Probab=94.75  E-value=0.24  Score=28.62  Aligned_cols=51  Identities=16%  Similarity=0.142  Sum_probs=41.1

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ...++.| +|..+++..++....+.+..|.+       .|+-+.+++.+.+++.|++++
T Consensus        10 ~~~~~~~-~t~~~~~~~~~~~~~~~~v~~~v-------ng~~~dL~~~l~~~~~ie~i~   60 (61)
T cd01667          10 VKEFPKG-TTPLDIAKSISPGLAKKAVAAKV-------NGELVDLSRPLEEDCELEIIT   60 (61)
T ss_pred             EEEeCCC-CCHHHHHHHHHHHHHhheEEEEE-------CCEEecCCcCcCCCCEEEEEe
Confidence            4667786 99999999998887776666654       567788999999999999875

In addition to its catalytic and anticodon-binding domains, ThrRS has an N-terminal TGS domain, named after the ThrRS, GTPase, and SpoT proteins where it occurs. The TGS domain is thought to interact with the tRNA acceptor arm along with an adjacent N-terminal domain. The specific function of TGS is not well understood.

>KOG0092|consensus

Probab=94.74  E-value=0.035  Score=42.43  Aligned_cols=50  Identities=14%  Similarity=0.088  Sum_probs=35.7

Q ss_pred             CcccCCCCCHh-----hHHHHhcCC--CeEEEeecCCcChHHHHHHHHHhhccceEE
Q psy2927           1 MQKVSDQISIE-----ELDIIYKIP--HCVPLSAHHKWNFDDLLEKMWEYLKLTRIY   50 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~~~~--~~v~ISA~~~~gld~L~e~i~~~L~~irvy   50 (123)
                      |.||+|+...-     +...++...  -.+..||+++.|+++|...|.+.|+..+.-
T Consensus       116 vGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~if~~Ia~~lp~~~~~  172 (200)
T KOG0092|consen  116 VGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEIFQAIAEKLPCSDPQ  172 (200)
T ss_pred             ecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHHHHHHHHhccCcccc
Confidence            57999988632     223332111  356799999999999999999998764433

>cd04103 Centaurin_gamma Centaurin gamma

Probab=94.72  E-value=0.038  Score=39.52  Aligned_cols=43  Identities=5%  Similarity=-0.033  Sum_probs=29.5

Q ss_pred             CcccCCCCC--H-----hhHHHHh-cC--CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQIS--I-----EELDIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~--~-----e~l~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||.|+..  +     ++.+.+. ..  -..+.+||+++.|++++.+.+.+.
T Consensus       105 vgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         105 VGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCCCCCHHHHHHHHHhh
Confidence            579999742  1     2223342 22  257889999999999999887654

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd04177 RSR1 RSR1 subgroup

Probab=94.71  E-value=0.043  Score=38.92  Aligned_cols=44  Identities=11%  Similarity=0.046  Sum_probs=30.9

Q ss_pred             CcccCCCCCHh-----hHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....     +...+ ..+  -..+++||+++.|++++.+.+...+
T Consensus       112 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         112 VGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             EEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            57999986432     22222 222  2478999999999999999988654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>PRK06944 sulfur carrier protein ThiS; Provisional

Probab=94.63  E-value=0.051  Score=33.47  Aligned_cols=53  Identities=13%  Similarity=0.164  Sum_probs=32.8

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +++-++.+ +|+.++...+--  ...+..|+    +..+-++.-..++.|+|||.|+|++
T Consensus         8 ~~~~~~~~-~tl~~ll~~l~~--~~~~~v~v----N~~~v~~~~~~~~~L~~gD~vei~~   60 (65)
T PRK06944          8 QTLSLPDG-ATVADALAAYGA--RPPFAVAV----NGDFVARTQHAARALAAGDRLDLVQ   60 (65)
T ss_pred             EEEECCCC-CcHHHHHHhhCC--CCCeEEEE----CCEEcCchhcccccCCCCCEEEEEe
Confidence            46777886 899999865432  23332222    2222222233478999999999985

>cd01873 RhoBTB RhoBTB subfamily

Probab=94.54  E-value=0.039  Score=41.11  Aligned_cols=22  Identities=9%  Similarity=0.176  Sum_probs=18.9

Q ss_pred             CeEEEeecCCcChHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      ..+.+||++|.|++++.+.+.+
T Consensus       172 ~~~E~SAkt~~~V~e~F~~~~~  193 (195)
T cd01873         172 PYYETSVVTQFGVKDVFDNAIR  193 (195)
T ss_pred             EEEEcCCCCCCCHHHHHHHHHH
Confidence            4778999999999999887765

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=94.53  E-value=0.022  Score=48.39  Aligned_cols=38  Identities=24%  Similarity=0.062  Sum_probs=25.1

Q ss_pred             CcccCCCCC--HhhHH----HH----hc-----CCCeEEEeecCCcChHHHHH
Q psy2927           1 MQKVSDQIS--IEELD----II----YK-----IPHCVPLSAHHKWNFDDLLE   38 (123)
Q Consensus         1 V~NKiD~~~--~e~l~----~l----~~-----~~~~v~ISA~~~~gld~L~e   38 (123)
                      |+||+|+..  .+.++    .+    ..     ..+++||||.+|.|++++.+
T Consensus       166 vvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~~~  218 (474)
T PRK05124        166 AVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQSE  218 (474)
T ss_pred             EEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccccc
Confidence            589999883  22222    11    11     13589999999999987653

>PRK05659 sulfur carrier protein ThiS; Validated

Probab=94.53  E-value=0.049  Score=33.70  Aligned_cols=54  Identities=22%  Similarity=0.246  Sum_probs=34.8

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ++..++.| .|+.|+....  .+.... .|...  +..+-++..-.++.|+|||.|+|++
T Consensus         8 ~~~~~~~~-~tl~~lL~~l--~~~~~~-vav~v--Ng~iv~r~~~~~~~l~~gD~vei~~   61 (66)
T PRK05659          8 EPRELPDG-ESVAALLARE--GLAGRR-VAVEV--NGEIVPRSQHASTALREGDVVEIVH   61 (66)
T ss_pred             eEEEcCCC-CCHHHHHHhc--CCCCCe-EEEEE--CCeEeCHHHcCcccCCCCCEEEEEE
Confidence            36778887 9999998543  222222 22221  3333345556899999999999986

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=94.48  E-value=0.041  Score=49.54  Aligned_cols=44  Identities=11%  Similarity=0.155  Sum_probs=33.2

Q ss_pred             CcccCCCCCHh----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+....    +++.+. .+ .+++++||.+++|+++|.+.+.+.+
T Consensus       118 VlNK~Dl~~~~~i~id~~~L~~~LG~pVvpiSA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        118 ALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EEEchhhhhccCcHHHHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhh
Confidence            58999986432    234442 22 2589999999999999999999875

>PRK12736 elongation factor Tu; Reviewed

Probab=94.40  E-value=0.054  Score=44.71  Aligned_cols=45  Identities=20%  Similarity=0.230  Sum_probs=31.0

Q ss_pred             CcccCCCCCHhhH-H----HHh------cC----CCeEEEeecCCc--------ChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEEL-D----IIY------KI----PHCVPLSAHHKW--------NFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l-~----~l~------~~----~~~v~ISA~~~~--------gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.+++ +    .+.      .+    .+++++||.+|.        ++++|++.+.+.++
T Consensus       134 viNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp  201 (394)
T PRK12736        134 FLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIP  201 (394)
T ss_pred             EEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCC
Confidence            4899999854322 1    121      12    258999999983        67899999888765

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=94.40  E-value=0.053  Score=35.68  Aligned_cols=41  Identities=15%  Similarity=0.016  Sum_probs=29.4

Q ss_pred             CcccCCCCCHhhHHH------Hh--cCCCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQISIEELDI------IY--KIPHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~e~l~~------l~--~~~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+...+....      ..  .....+++||..+.|++++.+.|.
T Consensus       108 v~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         108 VGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEELFEELA  156 (157)
T ss_pred             EEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCCChHHHHHHHh
Confidence            579999875543221      11  234689999999999999998764

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>PLN02799 Molybdopterin synthase sulfur carrier subunit

Probab=94.37  E-value=0.17  Score=32.52  Aligned_cols=55  Identities=13%  Similarity=0.178  Sum_probs=35.5

Q ss_pred             cccEEEeCCCCCHHHHHHHhH---HHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          61 QSPVVLHTDRRSIEDFCNKLH---RTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        61 ~~~~~l~~g~~tv~d~a~~IH---~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      .+.+-++.| +|+.++...+-   ..+.+--....+     -..++.++.++.|+|||.|.|+.
T Consensus        20 ~~~~~~~~~-~tv~~L~~~l~~~~p~l~~~~~~~~v-----avN~~~v~~~~~l~dgDeVai~P   77 (82)
T PLN02799         20 DMTLELPAG-STTADCLAELVAKFPSLEEVRSCCVL-----ALNEEYTTESAALKDGDELAIIP   77 (82)
T ss_pred             eEEEECCCC-CcHHHHHHHHHHHChhHHHHhhCcEE-----EECCEEcCCCcCcCCCCEEEEeC
Confidence            346667776 99999977663   233331111111     12556688999999999999974

>cd01884 EF_Tu EF-Tu subfamily

Probab=94.36  E-value=0.062  Score=40.26  Aligned_cols=33  Identities=21%  Similarity=0.102  Sum_probs=21.3

Q ss_pred             CcccCCCCCHhh-HH----HH----h--cC----CCeEEEeecCCcCh
Q psy2927           1 MQKVSDQISIEE-LD----II----Y--KI----PHCVPLSAHHKWNF   33 (123)
Q Consensus         1 V~NKiD~~~~e~-l~----~l----~--~~----~~~v~ISA~~~~gl   33 (123)
                      |+||+|+...++ .+    ++    .  .+    .+.+||||.+|.|.
T Consensus       124 viNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         124 FLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             EEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEEeeCccccCC
Confidence            479999874332 11    12    1  12    25899999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=94.17  E-value=0.064  Score=48.20  Aligned_cols=45  Identities=24%  Similarity=0.293  Sum_probs=31.9

Q ss_pred             CcccCCCCCH--hhH-HHHhc----------CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI--EEL-DIIYK----------IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~--e~l-~~l~~----------~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...  +.+ ..+..          ...++++||.+|.|+++|++.+.....
T Consensus       353 ViNKiDl~~~~~e~v~~eL~~~~ll~e~~g~~vpvv~VSAktG~GIdeLle~I~~l~e  410 (742)
T CHL00189        353 AINKIDKANANTERIKQQLAKYNLIPEKWGGDTPMIPISASQGTNIDKLLETILLLAE  410 (742)
T ss_pred             EEECCCccccCHHHHHHHHHHhccchHhhCCCceEEEEECCCCCCHHHHHHhhhhhhh
Confidence            5899998742  222 22211          124799999999999999999987654

>TIGR01683 thiS thiamine biosynthesis protein ThiS

Probab=94.10  E-value=0.061  Score=33.30  Aligned_cols=54  Identities=17%  Similarity=0.278  Sum_probs=33.1

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +++-++.+ +|+.|+...+.-+. +.+.-|+    +..+-++.-..++.|+|||.|+|++
T Consensus         6 ~~~~~~~~-~tv~~ll~~l~~~~-~~v~v~v----N~~iv~~~~~~~~~L~~gD~veii~   59 (64)
T TIGR01683         6 EPVEVEDG-LTLAALLESLGLDP-RRVAVAV----NGEIVPRSEWDDTILKEGDRIEIVT   59 (64)
T ss_pred             eEEEcCCC-CcHHHHHHHcCCCC-CeEEEEE----CCEEcCHHHcCceecCCCCEEEEEE
Confidence            46677886 89999987654321 2222221    2222223335678999999999986

This model represents ThiS, a small thiamine-biosynthesis protein related to MoaD, a molybdenum cofactor biosynthesis protein. Both proteins are involved in sulfur transfer. ThiS has a conserved Gly-Gly C-terminus that is modified, in reactions requiring ThiI, ThiF, IscS, and a sulfur atom from Cys, into the thiocarboxylate that provides the sulfur for thiazole biosynthesis.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=94.09  E-value=0.042  Score=45.56  Aligned_cols=16  Identities=25%  Similarity=0.181  Sum_probs=14.0

Q ss_pred             CeEEEeecCCcChHHH
Q psy2927          21 HCVPLSAHHKWNFDDL   36 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L   36 (123)
                      +++++||.+|.|++++
T Consensus       181 ~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        181 PFIPVSAFEGDNVVKK  196 (425)
T ss_pred             eEEEeecccCCCcccc
Confidence            4799999999999873

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=94.05  E-value=0.081  Score=40.89  Aligned_cols=24  Identities=8%  Similarity=-0.038  Sum_probs=19.7

Q ss_pred             CeEEEeecCCc-ChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKW-NFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~-gld~L~e~i~~~L   44 (123)
                      ..+.+||++|. |++++.+.+...+
T Consensus       163 ~~~EtSAktg~~~V~e~F~~~~~~~  187 (232)
T cd04174         163 VYLECSAFTSEKSIHSIFRSASLLC  187 (232)
T ss_pred             EEEEccCCcCCcCHHHHHHHHHHHH
Confidence            36789999998 8999988887754

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>COG1162 Predicted GTPases [General function prediction only]

Probab=94.02  E-value=0.075  Score=43.06  Aligned_cols=48  Identities=17%  Similarity=0.100  Sum_probs=33.5

Q ss_pred             CcccCCCCCHhhHH--HH----hcCC-CeEEEeecCCcChHHHHHHHHHhhccceEEe
Q psy2927           1 MQKVSDQISIEELD--II----YKIP-HCVPLSAHHKWNFDDLLEKMWEYLKLTRIYT   51 (123)
Q Consensus         1 V~NKiD~~~~e~l~--~l----~~~~-~~v~ISA~~~~gld~L~e~i~~~L~~irvyt   51 (123)
                      ++||+|+++.++..  ..    .... .++.+||++++|+++|.+.+...   +.++.
T Consensus       116 vlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~---~svl~  170 (301)
T COG1162         116 VLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGK---ITVLL  170 (301)
T ss_pred             EEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCC---eEEEE
Confidence            58999999766543  11    1223 47889999999999988776554   45555

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=94.00  E-value=0.066  Score=39.17  Aligned_cols=15  Identities=20%  Similarity=0.246  Sum_probs=12.3

Q ss_pred             CeEEEeecCCcChHH
Q psy2927          21 HCVPLSAHHKWNFDD   35 (123)
Q Consensus        21 ~~v~ISA~~~~gld~   35 (123)
                      ..+++||++|+|+++
T Consensus       158 ~iv~~Sa~~g~~~~~  172 (194)
T cd01891         158 PVLYASAKNGWASLN  172 (194)
T ss_pred             CEEEeehhccccccc
Confidence            478999999988744

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=93.93  E-value=0.036  Score=41.42  Aligned_cols=16  Identities=25%  Similarity=0.179  Sum_probs=13.8

Q ss_pred             CeEEEeecCCcChHHH
Q psy2927          21 HCVPLSAHHKWNFDDL   36 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L   36 (123)
                      .++++||.+|.|+++.
T Consensus       170 ~ii~iSA~~g~ni~~~  185 (208)
T cd04166         170 TFIPISALDGDNVVSR  185 (208)
T ss_pred             eEEEEeCCCCCCCccC
Confidence            4899999999999853

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=93.92  E-value=0.042  Score=46.57  Aligned_cols=45  Identities=11%  Similarity=0.217  Sum_probs=35.0

Q ss_pred             CcccCCCCCHhhHHHH-----h--cC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDII-----Y--KI--PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l-----~--~~--~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+++.++..     .  .+  .+.+++||.+|.|+++|.+.|.++++
T Consensus       109 vltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         109 VLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             EEeccccccHHHHHHHHHHHHhhcccccccccccccccCCCHHHHHHHHHHhhh
Confidence            6899999977554322     1  22  24688999999999999999999985

>PF02597 ThiS: ThiS family; InterPro: IPR003749 ThiS (thiaminS) is a 66 aa protein involved in sulphur transfer

Probab=93.92  E-value=0.088  Score=32.99  Aligned_cols=54  Identities=19%  Similarity=0.210  Sum_probs=35.3

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhc--ceeEEecCCCCCCCcee---CCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEF--KYALVWGSSVKHQPQKV---GKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f--~~A~vwg~s~k~~~q~v---g~~~~l~d~Dvv~i~~  121 (123)
                      ..+.++.+ +|+.|+...+-.....-+  .+..|.     ..++.+   +.++.|+|||.|.|+.
T Consensus        14 ~~~~~~~~-~tv~~ll~~l~~~~p~~~~~~~~~v~-----vN~~~v~~~~~~~~l~~gD~V~i~p   72 (77)
T PF02597_consen   14 EEIEVPEG-STVRDLLEALAERYPELALRDRVAVA-----VNGEIVPDDGLDTPLKDGDEVAILP   72 (77)
T ss_dssp             EEEEESST-SBHHHHHHHHCHHTGGGHTTTTEEEE-----ETTEEEGGGTTTSBEETTEEEEEEE
T ss_pred             eEEecCCC-CcHHHHHHHHHhhccccccCccEEEE-----ECCEEcCCccCCcCcCCCCEEEEEC
Confidence            35667776 999999977655553110  333332     133444   4599999999999975

ThiS is coded in the thiCEFSGH operon in Escherichia coli. This family of proteins have two conserved Glycines at the COOH terminus. Thiocarboxylate is formed at the last G in the activation process. Sulphur is transferred from ThiI to ThiS in a reaction catalysed by IscS []. MoaD, a protein involved in sulphur transfer during molybdopterin synthesis, is about the same length and shows limited sequence similarity to ThiS. Both have the conserved GG at the COOH end.; PDB: 1JW9_D 1JWB_D 1JWA_D 3BII_D 1NVI_D 1FMA_D 1FM0_D 2QIE_G 2Q5W_D 2K5P_A ....

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=93.85  E-value=0.062  Score=46.94  Aligned_cols=42  Identities=19%  Similarity=0.177  Sum_probs=29.5

Q ss_pred             CcccCCCCC--HhhHH-HHhc-------C---CCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQIS--IEELD-IIYK-------I---PHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~--~e~l~-~l~~-------~---~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      ++||+|+..  .+.+. .+..       +   ...+++||++|+|+++|++.+..
T Consensus       193 viNKiDl~~~~~e~v~~~L~~~g~~~~~~~~~~~~v~iSAktGeGI~eLl~~I~~  247 (587)
T TIGR00487       193 AINKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVSALTGDGIDELLDMILL  247 (587)
T ss_pred             EEECcccccCCHHHHHHHHHHhhhhHHhcCCCceEEEEECCCCCChHHHHHhhhh
Confidence            579999863  33332 2211       1   24799999999999999998864

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>PLN03108 Rab family protein; Provisional

Probab=93.82  E-value=0.1  Score=38.91  Aligned_cols=44  Identities=16%  Similarity=0.043  Sum_probs=29.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++.+++. .+ -..+.+||.++.|++++.+.+.+.+
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~f~~l~~~~  167 (210)
T PLN03108        117 IGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKI  167 (210)
T ss_pred             EEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799998642     3333342 21 2478899999999999776655543

>COG0218 Predicted GTPase [General function prediction only]

Probab=93.71  E-value=0.11  Score=39.79  Aligned_cols=46  Identities=26%  Similarity=0.338  Sum_probs=34.2

Q ss_pred             CcccCCCCCHhhH----HHHh-----cCC-C--eEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEEL----DIIY-----KIP-H--CVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l~-----~~~-~--~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|.+...+.    ..+.     ..+ .  .+..|+.++.|+++|...|.+.+..
T Consensus       141 v~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         141 VLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             EEEccccCChhHHHHHHHHHHHHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            5899999976443    2221     122 2  7889999999999999999998764

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=93.69  E-value=0.072  Score=39.23  Aligned_cols=22  Identities=18%  Similarity=0.075  Sum_probs=18.6

Q ss_pred             CeEEEeecCCcC-hHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWN-FDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~g-ld~L~e~i~~   42 (123)
                      ..+.+||+++.| ++++.+.+.+
T Consensus       155 ~~~E~SAk~~~n~v~~~F~~~~~  177 (182)
T cd04172         155 TYIECSALQSENSVRDIFHVATL  177 (182)
T ss_pred             EEEECCcCCCCCCHHHHHHHHHH
Confidence            477899999998 9998877766

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=93.68  E-value=0.064  Score=37.61  Aligned_cols=32  Identities=16%  Similarity=-0.005  Sum_probs=22.2

Q ss_pred             CcccCCCCCHhhHHHH----h-cCCCeEEEeecCCcC
Q psy2927           1 MQKVSDQISIEELDII----Y-KIPHCVPLSAHHKWN   32 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~-~~~~~v~ISA~~~~g   32 (123)
                      |+||+|+++++.+..+    . .....+++||.++.+
T Consensus        48 vlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~~~   84 (141)
T cd01857          48 LLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKENA   84 (141)
T ss_pred             EEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCCCc
Confidence            5899999876554332    1 223589999998876

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>PRK14845 translation initiation factor IF-2; Provisional

Probab=93.67  E-value=0.068  Score=49.70  Aligned_cols=22  Identities=27%  Similarity=0.238  Sum_probs=19.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      .++||||.+|+|+++|++.+..
T Consensus       649 ~iVpVSA~tGeGId~Ll~~l~~  670 (1049)
T PRK14845        649 AIVPVSAKTGEGIPELLMMVAG  670 (1049)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            5799999999999999998864

>cd00754 MoaD Ubiquitin domain of MoaD-like proteins

Probab=93.56  E-value=0.3  Score=30.82  Aligned_cols=50  Identities=18%  Similarity=0.274  Sum_probs=34.1

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHH-------hhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIA-------KEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~-------~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      .+-++.+ +|+.|+...+=....       +.+..|+        .++.+-.++.|+|||.|.|+.
T Consensus        19 ~~~~~~~-~tv~~ll~~l~~~~~~~~~~~~~~~~v~v--------Ng~~v~~~~~l~~gD~v~i~p   75 (80)
T cd00754          19 ELELPEG-ATVGELLDALEARYPGLLEELLARVRIAV--------NGEYVRLDTPLKDGDEVAIIP   75 (80)
T ss_pred             EEECCCC-CcHHHHHHHHHHHCchHHHhhhhcEEEEE--------CCeEcCCCcccCCCCEEEEeC
Confidence            5566776 999999877654421       1222222        455666999999999999975

MoaD family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), that contains the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase, the second major step in Moco biosynthesis. MPT synthase consists of a large (MoeE) and small (MoaD) subunit. The small subunit is inserted into the lare subunit to form the active site. The small subunit, which is structurally similar to ubiquitin, contains a C-terminal thiocarboxylated glycine residue that serves as a sulfur donor for the synthesis of the MPT dithiolene group.

>PRK06437 hypothetical protein; Provisional

Probab=93.52  E-value=0.15  Score=32.13  Aligned_cols=51  Identities=20%  Similarity=0.373  Sum_probs=36.3

Q ss_pred             cccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          61 QSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        61 ~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ++.+-++.+ +|+.|+...+.-+  .. ..|..      ..++-+-.++.|+|||.|+|++
T Consensus        12 ~~~~~i~~~-~tv~dLL~~Lgi~--~~-~vaV~------vNg~iv~~~~~L~dgD~Veiv~   62 (67)
T PRK06437         12 NKTIEIDHE-LTVNDIIKDLGLD--EE-EYVVI------VNGSPVLEDHNVKKEDDVLILE   62 (67)
T ss_pred             ceEEEcCCC-CcHHHHHHHcCCC--Cc-cEEEE------ECCEECCCceEcCCCCEEEEEe
Confidence            456777887 9999999776432  11 22331      3566677999999999999975

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=93.31  E-value=0.071  Score=44.27  Aligned_cols=15  Identities=27%  Similarity=0.244  Sum_probs=13.4

Q ss_pred             CeEEEeecCCcChHH
Q psy2927          21 HCVPLSAHHKWNFDD   35 (123)
Q Consensus        21 ~~v~ISA~~~~gld~   35 (123)
                      ..+++||.+|.|+++
T Consensus       183 ~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       183 PFIPISAWNGDNVIK  197 (426)
T ss_pred             eEEEeeccccccccc
Confidence            479999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=93.23  E-value=0.16  Score=38.08  Aligned_cols=43  Identities=16%  Similarity=0.135  Sum_probs=30.3

Q ss_pred             CcccCCCCCH----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...    +.+ .+. .. -..+.+||++|.|++++.+.+.+.+
T Consensus       105 vgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i  153 (200)
T smart00176      105 CGNKVDVKDRKVKAKSI-TFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  153 (200)
T ss_pred             EEECcccccccCCHHHH-HHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799997532    222 221 11 2478899999999999999888766

Ran is involved in the active transport of proteins through nuclear pores.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=93.23  E-value=0.089  Score=46.05  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=19.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      .++|+||.+|+|+++|++.+..
T Consensus       192 ~iVpVSA~tGeGideLl~~l~~  213 (590)
T TIGR00491       192 AIIPISAITGEGIPELLTMLAG  213 (590)
T ss_pred             eEEEeecCCCCChhHHHHHHHH
Confidence            5799999999999999998754

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd04131 Rnd Rnd subfamily

Probab=93.19  E-value=0.09  Score=38.38  Aligned_cols=22  Identities=14%  Similarity=-0.002  Sum_probs=18.5

Q ss_pred             CeEEEeecCCcC-hHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWN-FDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~g-ld~L~e~i~~   42 (123)
                      ..+.+||++|+| ++++.+.+.+
T Consensus       151 ~~~E~SA~~~~~~v~~~F~~~~~  173 (178)
T cd04131         151 IYLECSAFTSEKSVRDIFHVATM  173 (178)
T ss_pred             EEEECccCcCCcCHHHHHHHHHH
Confidence            467899999995 9998887776

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=93.19  E-value=0.059  Score=42.94  Aligned_cols=46  Identities=20%  Similarity=0.189  Sum_probs=30.2

Q ss_pred             CcccCCCCCHhh----HHH-Hh--c------CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE----LDI-IY--K------IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~-l~--~------~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||.|....+.    +.. +.  .      .|+++.+||.++.|+++|.++|.++...
T Consensus       173 vVNKaD~~gA~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~  231 (266)
T PF03308_consen  173 VVNKADRPGADRTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY  231 (266)
T ss_dssp             EEE--SHHHHHHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCChHHHHHHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            689999654432    211 11  1      2568889999999999999999987543

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=93.14  E-value=0.12  Score=38.97  Aligned_cols=43  Identities=16%  Similarity=0.152  Sum_probs=30.5

Q ss_pred             CcccCCCCCH----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...    +++ .+ .. .-..+.+||++|.|++++.+.+.+.+
T Consensus       123 vgNK~Dl~~~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~f~~l~~~~  171 (219)
T PLN03071        123 CGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL  171 (219)
T ss_pred             EEEchhhhhccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHHHHHHHHHH
Confidence            5799997532    222 22 21 12478899999999999998888766

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=93.11  E-value=0.15  Score=45.28  Aligned_cols=45  Identities=13%  Similarity=0.209  Sum_probs=33.1

Q ss_pred             CcccCCCCCHh----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ++|++|.....    +.++|. .. -+++++||.+|.|+|+|++++-+...
T Consensus       114 aLNm~D~A~~~Gi~ID~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         114 ALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAIIELAE  164 (653)
T ss_pred             EeccHhhHHhcCCcccHHHHHHHhCCCEEEEEeecCCCHHHHHHHHHHhcc
Confidence            47999976442    234442 22 25999999999999999999988754

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=92.94  E-value=0.066  Score=46.78  Aligned_cols=36  Identities=19%  Similarity=0.102  Sum_probs=23.9

Q ss_pred             CcccCCCCC--HhhHH----HH----h--cCC--CeEEEeecCCcChHHH
Q psy2927           1 MQKVSDQIS--IEELD----II----Y--KIP--HCVPLSAHHKWNFDDL   36 (123)
Q Consensus         1 V~NKiD~~~--~e~l~----~l----~--~~~--~~v~ISA~~~~gld~L   36 (123)
                      |+||+|+..  .+.++    .+    .  .+.  +.+||||.+|.|++++
T Consensus       163 vvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~~  212 (632)
T PRK05506        163 AVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVTR  212 (632)
T ss_pred             EEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCcccc
Confidence            589999974  32222    11    1  232  4899999999999853

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=92.93  E-value=0.086  Score=43.32  Aligned_cols=67  Identities=18%  Similarity=0.141  Sum_probs=37.6

Q ss_pred             CcccCCCCCHhhHHH--------H-h--cCC----CeEEEeecC-CcChHHHHHHHHHhhccceEEeCCCCCCCCCcccE
Q psy2927           1 MQKVSDQISIEELDI--------I-Y--KIP----HCVPLSAHH-KWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPV   64 (123)
Q Consensus         1 V~NKiD~~~~e~l~~--------l-~--~~~----~~v~ISA~~-~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~   64 (123)
                      .+||+|+++.+++..        | .  .||    +++.-||.. .+|-..-.+.|.++|.-.--|...|-  ++.++||
T Consensus       134 flnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Pe--r~~dkPf  211 (394)
T COG0050         134 FLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPE--RDIDKPF  211 (394)
T ss_pred             EEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCC--Ccccccc
Confidence            379999997544322        1 1  344    345556655 34444444555555554444544444  4577899


Q ss_pred             EEeCC
Q psy2927          65 VLHTD   69 (123)
Q Consensus        65 ~l~~g   69 (123)
                      ++|-.
T Consensus       212 lmpvE  216 (394)
T COG0050         212 LMPVE  216 (394)
T ss_pred             cccce
Confidence            98864

>PRK04004 translation initiation factor IF-2; Validated

Probab=92.92  E-value=0.11  Score=45.43  Aligned_cols=22  Identities=32%  Similarity=0.282  Sum_probs=19.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      ..+|+||.+|+|+++|++.+..
T Consensus       194 ~ivpiSA~tGeGi~dLl~~i~~  215 (586)
T PRK04004        194 AIVPVSAKTGEGIPDLLMVLAG  215 (586)
T ss_pred             eEeeccCCCCCChHHHHHHHHH
Confidence            4799999999999999988864

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=92.69  E-value=0.12  Score=46.78  Aligned_cols=43  Identities=21%  Similarity=0.205  Sum_probs=30.2

Q ss_pred             CcccCCCCC--HhhH-HHHh-------cC---CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQIS--IEEL-DIIY-------KI---PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~--~e~l-~~l~-------~~---~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+..  .+.+ ..+.       .+   -.++++||.+|.|+++|++.|...
T Consensus       395 viNKiDl~~a~~e~V~~eL~~~~~~~e~~g~~vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        395 AINKIDKPGANPDRVKQELSEYGLVPEEWGGDTIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             EEECccccccCHHHHHHHHHHhcccHHHhCCCceEEEEeCCCCCCchHHHHhhhhh
Confidence            589999864  2222 2221       11   248999999999999999998754

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=92.65  E-value=0.074  Score=44.12  Aligned_cols=36  Identities=19%  Similarity=0.052  Sum_probs=23.7

Q ss_pred             CcccCCCCC--HhhH----HHH----h--cCC--CeEEEeecCCcChHHH
Q psy2927           1 MQKVSDQIS--IEEL----DII----Y--KIP--HCVPLSAHHKWNFDDL   36 (123)
Q Consensus         1 V~NKiD~~~--~e~l----~~l----~--~~~--~~v~ISA~~~~gld~L   36 (123)
                      |+||+|+..  .+.+    +.+    .  .+.  +++||||.+|+|++++
T Consensus       139 viNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~~  188 (406)
T TIGR02034       139 AVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVSR  188 (406)
T ss_pred             EEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCccc
Confidence            589999874  2211    111    1  122  4899999999999864

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0466|consensus

Probab=92.18  E-value=0.17  Score=41.87  Aligned_cols=50  Identities=28%  Similarity=0.354  Sum_probs=36.5

Q ss_pred             cccCCCCCHhh-H---HHHh--------cCCCeEEEeecCCcChHHHHHHHHHhhcc-ceEEe
Q psy2927           2 QKVSDQISIEE-L---DIIY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL-TRIYT   51 (123)
Q Consensus         2 ~NKiD~~~~e~-l---~~l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~~-irvyt   51 (123)
                      -||+|++.++. +   +.+.        +-.++|||||.-+.|+|.+.|.|.+.++. .|=|+
T Consensus       186 QNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRdf~  248 (466)
T KOG0466|consen  186 QNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRDFT  248 (466)
T ss_pred             echhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccccC
Confidence            59999996542 2   2221        22369999999999999999999998875 33344

>TIGR00485 EF-Tu translation elongation factor TU

Probab=92.03  E-value=0.17  Score=41.61  Aligned_cols=44  Identities=20%  Similarity=0.265  Sum_probs=26.2

Q ss_pred             CcccCCCCCHhhH-H----HH----h--cC----CCeEEEeecCCc--------ChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEEL-D----II----Y--KI----PHCVPLSAHHKW--------NFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l-~----~l----~--~~----~~~v~ISA~~~~--------gld~L~e~i~~~L   44 (123)
                      |+||+|+++.+++ +    ++    .  .+    .+++++||.++.        ++..|++++.+.+
T Consensus       134 vvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~vSa~~g~~g~~~~~~~~~~ll~~l~~~~  200 (394)
T TIGR00485       134 FLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRGSALKALEGDAEWEAKILELMDAVDEYI  200 (394)
T ss_pred             EEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEECccccccccCCchhHhHHHHHHHHHhcC
Confidence            4799999864321 1    12    1  12    257999999875        3455666665543

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=92.01  E-value=0.23  Score=36.76  Aligned_cols=28  Identities=21%  Similarity=0.320  Sum_probs=23.6

Q ss_pred             CCCeEEEeec--CCcChHHHHHHHHHhhcc
Q psy2927          19 IPHCVPLSAH--HKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus        19 ~~~~v~ISA~--~~~gld~L~e~i~~~L~~   46 (123)
                      .|.++++|+.  .+.|+..|.+.|...|+-
T Consensus       156 ~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         156 EPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             CCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence            3578889998  679999999999998864

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK12735 elongation factor Tu; Reviewed

Probab=92.01  E-value=0.16  Score=41.88  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=30.7

Q ss_pred             CcccCCCCCHhh--------HHHH-h--cC----CCeEEEeecCCc----------ChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE--------LDII-Y--KI----PHCVPLSAHHKW----------NFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~--------l~~l-~--~~----~~~v~ISA~~~~----------gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.++        +..+ .  .+    -+.+++||.+|+          ++..|++++.+.++
T Consensus       134 vvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~  203 (396)
T PRK12735        134 FLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP  203 (396)
T ss_pred             EEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence            479999985432        1111 1  12    247999999984          67899999988764

>cd00565 ThiS ThiaminS ubiquitin-like sulfur carrier protein

Probab=91.98  E-value=0.3  Score=30.21  Aligned_cols=50  Identities=18%  Similarity=0.244  Sum_probs=33.7

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCC----ceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKE----HVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~----~~l~d~Dvv~i~~  121 (123)
                      +++.++.+ +|+.++...+--+   .-..|.      ...++-+.++    +.|.|||.|+|++
T Consensus         7 ~~~~~~~~-~tv~~ll~~l~~~---~~~i~V------~vNg~~v~~~~~~~~~L~~gD~V~ii~   60 (65)
T cd00565           7 EPREVEEG-ATLAELLEELGLD---PRGVAV------ALNGEIVPRSEWASTPLQDGDRIEIVT   60 (65)
T ss_pred             eEEEcCCC-CCHHHHHHHcCCC---CCcEEE------EECCEEcCHHHcCceecCCCCEEEEEE
Confidence            46777886 8999998665311   112232      1355666666    9999999999976

ThiS (ThiaminS) is a sulfur carrier protein involved in thiamin biosynthesis in bacteria. The ThiS fold, like those of two closely related proteins MoaD and Urm1, is similar to that of ubiquitin although there is little or no sequence similarity.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=91.94  E-value=0.19  Score=38.90  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ..+|+|+.+++|+++|...|-+.++
T Consensus       213 ~f~pls~~~~~~~~~L~~~id~a~~  237 (238)
T PF03029_consen  213 RFIPLSSKDGEGMEELLAAIDKANQ  237 (238)
T ss_dssp             --EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred             eEEEEECCChHHHHHHHHHHHHHhc
Confidence            5789999999999999998887654

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=91.80  E-value=0.26  Score=40.28  Aligned_cols=61  Identities=15%  Similarity=0.156  Sum_probs=39.9

Q ss_pred             CCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhccee
Q psy2927          20 PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYA   91 (123)
Q Consensus        20 ~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A   91 (123)
                      |+++-+||.+|+|+++|.++|.+.+..    .+..|..-      --++- -.++++-..++.++.+.+...
T Consensus       229 ppv~~t~A~~g~Gi~~L~~ai~~h~~~----~~~sg~~~------~~rr~-q~~~~~~~~v~~~v~~~~~~~  289 (323)
T COG1703         229 PPVVTTSALEGEGIDELWDAIEDHRKF----LTESGLFT------EKRRT-QYVEWIRTLVRDEVLDRLEAN  289 (323)
T ss_pred             CceeEeeeccCCCHHHHHHHHHHHHHH----HHhccccc------cchHH-HHHHHHHHHHHHHHHHHHHcc
Confidence            568889999999999999999998764    34444210      01121 355666666666666665444

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=91.74  E-value=0.3  Score=41.33  Aligned_cols=35  Identities=20%  Similarity=0.224  Sum_probs=23.6

Q ss_pred             CcccCCCCC--HhhHHHH-------h---cCC----CeEEEeecCCcChHH
Q psy2927           1 MQKVSDQIS--IEELDII-------Y---KIP----HCVPLSAHHKWNFDD   35 (123)
Q Consensus         1 V~NKiD~~~--~e~l~~l-------~---~~~----~~v~ISA~~~~gld~   35 (123)
                      ++||+|.++  ++..+++       .   .+.    ..|||||..|.|+-+
T Consensus       151 avNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         151 AVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             EEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            479999993  4333332       1   122    489999999999954

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=91.60  E-value=0.11  Score=43.43  Aligned_cols=34  Identities=24%  Similarity=0.143  Sum_probs=23.4

Q ss_pred             CcccCCCCC--HhhHHHHh------------cCCCeEEEeecCCcChH
Q psy2927           1 MQKVSDQIS--IEELDIIY------------KIPHCVPLSAHHKWNFD   34 (123)
Q Consensus         1 V~NKiD~~~--~e~l~~l~------------~~~~~v~ISA~~~~gld   34 (123)
                      ++|||||++  ++..+++.            .....||+||..|.|+-
T Consensus       145 AVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         145 AVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             EEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            479999994  33334331            11258999999999983

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=91.10  E-value=0.36  Score=35.04  Aligned_cols=42  Identities=10%  Similarity=0.120  Sum_probs=31.2

Q ss_pred             CcccCCCCCHhhHHHH----h--cCCCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIEELDII----Y--KIPHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~--~~~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+.|+|+.++++++..    .  ...+++.+||....|+++|...+-.
T Consensus        96 vVTK~DLaed~dI~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~  143 (148)
T COG4917          96 VVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLAS  143 (148)
T ss_pred             EEecccccchHhHHHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHh
Confidence            4689999976655432    2  2346888999999999999887654

>KOG0094|consensus

Probab=91.03  E-value=0.37  Score=37.31  Aligned_cols=49  Identities=12%  Similarity=0.102  Sum_probs=37.4

Q ss_pred             CcccCCCCCHhhHH-----HHh-cCC-CeEEEeecCCcChHHHHHHHHHhhccceE
Q psy2927           1 MQKVSDQISIEELD-----IIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLKLTRI   49 (123)
Q Consensus         1 V~NKiD~~~~e~l~-----~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~~irv   49 (123)
                      |.||.||.+..++.     +.+ ++. ..+.+||+.|.|+.+|..+|-..|+...+
T Consensus       134 VGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~lFrrIaa~l~~~~~  189 (221)
T KOG0094|consen  134 VGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQLFRRIAAALPGMEV  189 (221)
T ss_pred             EcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHHHHHHHHHhccCccc
Confidence            67999999875532     221 222 46779999999999999999999987655

>PRK00049 elongation factor Tu; Reviewed

Probab=90.97  E-value=0.36  Score=39.90  Aligned_cols=45  Identities=18%  Similarity=0.229  Sum_probs=29.7

Q ss_pred             CcccCCCCCHhh-HH----HH----h--cC----CCeEEEeecCCc----------ChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE-LD----II----Y--KI----PHCVPLSAHHKW----------NFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~-l~----~l----~--~~----~~~v~ISA~~~~----------gld~L~e~i~~~L~   45 (123)
                      ++||+|+.+.++ .+    ++    .  .+    .+.+++||.++.          |+..|+++|.+.++
T Consensus       134 vvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~  203 (396)
T PRK00049        134 FLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP  203 (396)
T ss_pred             EEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence            379999985322 11    22    1  12    247999999875          56788888888654

>COG2914 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.78  E-value=0.48  Score=32.43  Aligned_cols=53  Identities=26%  Similarity=0.302  Sum_probs=35.0

Q ss_pred             CcccEEEeCCCCCHHHHHHHhHHHHHhhc-----ceeEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927          60 YQSPVVLHTDRRSIEDFCNKLHRTIAKEF-----KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV  120 (123)
Q Consensus        60 ~~~~~~l~~g~~tv~d~a~~IH~d~~~~f-----~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~  120 (123)
                      +-..+.|..| +||.|+...  +-|.+-|     ..+.+ |    .-+..+-++-.|+|||-|+|.
T Consensus        17 ~l~~v~v~eg-atV~dAi~~--Sgll~~~~~idl~~n~~-G----I~~k~~kl~~~l~dgDRVEIy   74 (99)
T COG2914          17 YLCRVQLQEG-ATVEDAILA--SGLLELFPDIDLHENKV-G----IYSKPVKLDDELHDGDRVEIY   74 (99)
T ss_pred             eEEEEEeccC-cCHHHHHHh--cchhhccccCCccccce-e----EEccccCccccccCCCEEEEe
Confidence            4557888997 999999754  4444333     22221 1    123557778889999999995

>CHL00071 tufA elongation factor Tu

Probab=90.40  E-value=0.3  Score=40.53  Aligned_cols=44  Identities=23%  Similarity=0.247  Sum_probs=28.0

Q ss_pred             CcccCCCCCHhhH-H----HH----h--cC----CCeEEEeecCCcC------------------hHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEEL-D----II----Y--KI----PHCVPLSAHHKWN------------------FDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l-~----~l----~--~~----~~~v~ISA~~~~g------------------ld~L~e~i~~~L   44 (123)
                      |+||+|+++.+++ +    ++    .  .+    ...+|+||.+|+|                  +..|++++.+.+
T Consensus       134 vvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~  210 (409)
T CHL00071        134 FLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYI  210 (409)
T ss_pred             EEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhC
Confidence            4899999864432 1    12    1  12    2479999999873                  456777776654

>cd01764 Urm1 Urm1-like ubuitin domain

Probab=90.35  E-value=0.71  Score=30.99  Aligned_cols=16  Identities=25%  Similarity=0.451  Sum_probs=14.9

Q ss_pred             CCCceecCCCeEEEEe
Q psy2927         106 GKEHVLNDEDVVQIVK  121 (123)
Q Consensus       106 g~~~~l~d~Dvv~i~~  121 (123)
                      |.+++|+|||.|.|+.
T Consensus        74 g~~t~L~dgD~v~i~P   89 (94)
T cd01764          74 EEDYILEDGDHVVFIS   89 (94)
T ss_pred             CcccCCCCcCEEEEEC
Confidence            8999999999999975

Urm1 (Ubiquitin-Related Modifier1) The Urm1 fold, like those of two closely related proteins MoaD (molybdopterin synthase) and ThiS (sulfur carrier protein), is similar to that of ubiquitin although there is little or no sequence similarity. The C-terminal glycines of Urm1 are conjugated to an E1-like protein Uba4 as part of a novel conjugation system in yeast. The Urm1 fold is found only in eukaryotes.

>TIGR01682 moaD molybdopterin converting factor, subunit 1, non-archaeal

Probab=90.31  E-value=0.84  Score=29.16  Aligned_cols=55  Identities=15%  Similarity=0.225  Sum_probs=34.7

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhc---ceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEF---KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f---~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ..+.++.+++|+.++...+-....+-+   .+..|     -..++.+..+..|+|||.|.|+.
T Consensus        18 ~~~~~~~~~~tv~~L~~~L~~~~p~l~~~~~~~~v-----~vn~~~v~~~~~l~dgDevai~P   75 (80)
T TIGR01682        18 ETLELPDESTTVGELKEHLAKEGPELAASRGQVMV-----AVNEEYVTDDALLNEGDEVAFIP   75 (80)
T ss_pred             EEEECCCCCcCHHHHHHHHHHhCchhhhhccceEE-----EECCEEcCCCcCcCCCCEEEEeC
Confidence            356677544899999877644332111   11111     12556677899999999999864

The C-terminal Gly-Gly of this model is critical to function.

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=90.17  E-value=0.7  Score=32.70  Aligned_cols=44  Identities=9%  Similarity=-0.037  Sum_probs=29.0

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecC---CcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHH---KWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~---~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .. -..+.+||++   +.|++++...+.+.+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~i~~~f~~l~~~~  168 (170)
T cd04115         115 VGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL  168 (170)
T ss_pred             EEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCCHHHHHHHHHHHh
Confidence            5799997633     2233332 21 2478899999   778888877776654

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>KOG0410|consensus

Probab=89.50  E-value=0.24  Score=41.15  Aligned_cols=26  Identities=19%  Similarity=0.041  Sum_probs=22.8

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      ..++|||.+|.|+++|+.++-..+-.
T Consensus       317 ~~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  317 LDVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             CccccccccCccHHHHHHHHHHHhhh
Confidence            38999999999999999999887654

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=89.50  E-value=0.39  Score=42.05  Aligned_cols=25  Identities=20%  Similarity=0.328  Sum_probs=21.9

Q ss_pred             CeEEEeecCCc----------ChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKW----------NFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~----------gld~L~e~i~~~L~   45 (123)
                      +++++||.+|+          |++.|++.|.+.++
T Consensus       157 pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP  191 (594)
T TIGR01394       157 PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVP  191 (594)
T ss_pred             cEEechhhcCcccccCcccccCHHHHHHHHHHhCC
Confidence            47899999996          79999999998875

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=89.49  E-value=0.33  Score=41.01  Aligned_cols=15  Identities=27%  Similarity=0.288  Sum_probs=12.8

Q ss_pred             CeEEEeecCCcChHH
Q psy2927          21 HCVPLSAHHKWNFDD   35 (123)
Q Consensus        21 ~~v~ISA~~~~gld~   35 (123)
                      ..+|+||.+|+|+.+
T Consensus       189 ~~ipiSa~~G~ni~~  203 (447)
T PLN00043        189 PFVPISGFEGDNMIE  203 (447)
T ss_pred             eEEEEeccccccccc
Confidence            479999999999854

>PRK08053 sulfur carrier protein ThiS; Provisional

Probab=89.37  E-value=0.44  Score=29.64  Aligned_cols=54  Identities=13%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +++-++.+ .|+.++...+--+ .+.+.-|+    +..+-++.-=.++.|.|||.|+|++
T Consensus         8 ~~~~~~~~-~tl~~ll~~l~~~-~~~vaVav----N~~iv~r~~w~~~~L~~gD~Ieii~   61 (66)
T PRK08053          8 QPMQCAAG-QTVHELLEQLNQL-QPGAALAI----NQQIIPREQWAQHIVQDGDQILLFQ   61 (66)
T ss_pred             eEEEcCCC-CCHHHHHHHcCCC-CCcEEEEE----CCEEeChHHcCccccCCCCEEEEEE
Confidence            46777786 8999887543111 11222222    2233333334678899999999986

>PLN03127 Elongation factor Tu; Provisional

Probab=89.27  E-value=0.51  Score=39.90  Aligned_cols=45  Identities=24%  Similarity=0.284  Sum_probs=28.0

Q ss_pred             CcccCCCCCHhh----HH-HH----h--cCC----CeEEEeec---CCcC-------hHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE----LD-II----Y--KIP----HCVPLSAH---HKWN-------FDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~----l~-~l----~--~~~----~~v~ISA~---~~~g-------ld~L~e~i~~~L~   45 (123)
                      |+||+|+++.++    ++ .+    .  .++    +.+|+||.   +|.|       +..|++++.+.++
T Consensus       183 viNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp  252 (447)
T PLN03127        183 FLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIP  252 (447)
T ss_pred             EEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCC
Confidence            479999985432    11 11    1  222    36677765   5555       6788898888764

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=88.91  E-value=0.58  Score=39.49  Aligned_cols=43  Identities=14%  Similarity=0.135  Sum_probs=27.5

Q ss_pred             CcccCCCCCHhhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+... +.+.+. .+ ...+.+||++ .|++++.+.+.+.+.
T Consensus       316 V~NK~Dl~~~-~~~~~~~~~~~~~~~vSak~-~gI~~~~~~L~~~i~  360 (442)
T TIGR00450       316 VLNKIDLKIN-SLEFFVSSKVLNSSNLSAKQ-LKIKALVDLLTQKIN  360 (442)
T ss_pred             EEECccCCCc-chhhhhhhcCCceEEEEEec-CCHHHHHHHHHHHHH
Confidence            5899998644 233332 11 2468899998 477777766666554

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK08364 sulfur carrier protein ThiS; Provisional

Probab=88.64  E-value=1  Score=28.35  Aligned_cols=50  Identities=12%  Similarity=0.211  Sum_probs=34.1

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ..+-++.+ +|+.|+...+-  +..  ....|     ...++-+-.++.|+|||.|+|+.
T Consensus        16 ~~~~~~~~-~tv~~ll~~l~--~~~--~~v~v-----~vNg~iv~~~~~l~~gD~Veii~   65 (70)
T PRK08364         16 KEIEWRKG-MKVADILRAVG--FNT--ESAIA-----KVNGKVALEDDPVKDGDYVEVIP   65 (70)
T ss_pred             eEEEcCCC-CcHHHHHHHcC--CCC--ccEEE-----EECCEECCCCcCcCCCCEEEEEc
Confidence            35667886 89999986652  221  22222     13556677899999999999975

>KOG0461|consensus

Probab=88.56  E-value=0.97  Score=38.14  Aligned_cols=44  Identities=14%  Similarity=0.086  Sum_probs=30.8

Q ss_pred             CcccCCCCCHh----hHHHHh----------cC---CCeEEEeecCC----cChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE----ELDIIY----------KI---PHCVPLSAHHK----WNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~----------~~---~~~v~ISA~~~----~gld~L~e~i~~~L   44 (123)
                      |+||+|.+.+.    .+++.+          .+   .+++++||..|    +++.+|++++.+..
T Consensus       128 vinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~i  192 (522)
T KOG0461|consen  128 VINKIDVLPENQRASKIEKSAKKVRKTLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRI  192 (522)
T ss_pred             EEeccccccchhhhhHHHHHHHHHHHHHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhh
Confidence            68999988552    233221          12   25899999999    88888888887754

>KOG1423|consensus

Probab=88.48  E-value=0.96  Score=37.40  Aligned_cols=56  Identities=14%  Similarity=0.159  Sum_probs=36.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHH-hHHHHHhhc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNK-LHRTIAKEF   88 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~-IH~d~~~~f   88 (123)
                      +++++||++|+|+++|.+.+....+-      +|.+.|    +.++..  .+.+.+|.- |-..+.+..
T Consensus       247 ~vF~vSaL~G~GikdlkqyLmsqa~~------gpW~y~----a~i~T~--~s~e~l~~e~VReklLd~~  303 (379)
T KOG1423|consen  247 RVFMVSALYGEGIKDLKQYLMSQAPP------GPWKYP----ADIVTE--ESPEFLCSESVREKLLDHL  303 (379)
T ss_pred             eEEEEecccccCHHHHHHHHHhcCCC------CCCCCC----cccccc--cCHHHHHHHHHHHHHHhhC
Confidence            47899999999999999998876531      111111    333333  688888644 344454444

>PRK10218 GTP-binding protein; Provisional

Probab=88.30  E-value=0.5  Score=41.57  Aligned_cols=25  Identities=16%  Similarity=0.108  Sum_probs=21.1

Q ss_pred             CeEEEeecCCc----------ChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKW----------NFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~----------gld~L~e~i~~~L~   45 (123)
                      +++++||.+|+          |+..|+++|.+.++
T Consensus       161 PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP  195 (607)
T PRK10218        161 PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVP  195 (607)
T ss_pred             CEEEeEhhcCcccCCccccccchHHHHHHHHHhCC
Confidence            37999999998          58888888888775

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=87.88  E-value=1  Score=33.28  Aligned_cols=45  Identities=16%  Similarity=0.098  Sum_probs=30.3

Q ss_pred             CcccCCCCCHh---hHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE---ELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+....   +...+ ... -..+.+||+++.|++++...|.+.+-
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~ia~~l~  168 (215)
T PTZ00132        119 VGNKVDVKDRQVKARQITFHRKKNLQYYDISAKSNYNFEKPFLWLARRLT  168 (215)
T ss_pred             EEECccCccccCCHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            46999975322   11122 121 24788999999999998888887663

>KOG0088|consensus

Probab=87.34  E-value=0.76  Score=34.76  Aligned_cols=66  Identities=14%  Similarity=0.097  Sum_probs=39.1

Q ss_pred             CcccCCCCCHhhH-----HHHhc--CCCeEEEeecCCcChHHHHHHHHHhhc---cceEEeCCCCC--CCCCcccEEE
Q psy2927           1 MQKVSDQISIEEL-----DIIYK--IPHCVPLSAHHKWNFDDLLEKMWEYLK---LTRIYTKPKGQ--LPDYQSPVVL   66 (123)
Q Consensus         1 V~NKiD~~~~e~l-----~~l~~--~~~~v~ISA~~~~gld~L~e~i~~~L~---~irvytk~~g~--~pd~~~~~~l   66 (123)
                      |.||+|+-.+..+     +..++  -...+-.||+...|+.+|.+.+-..+-   ..|.-+++|+.  +|+..+.+-+
T Consensus       124 VGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N~Gi~elFe~Lt~~MiE~~s~~qr~~~~~s~qpp~t~r~~~~  201 (218)
T KOG0088|consen  124 VGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDNVGISELFESLTAKMIEHSSQRQRTRSPLSTQPPSTNRSIRL  201 (218)
T ss_pred             ecCcccHHHhhhhhHHHHHHHHHhhchhheecccccccCHHHHHHHHHHHHHHHhhhcccccCCcCCCCCCcccchhc
Confidence            5799997543222     11211  124678999999999987776655331   13556777765  4554444333

>COG1084 Predicted GTPase [General function prediction only]

Probab=87.26  E-value=0.69  Score=38.18  Aligned_cols=43  Identities=21%  Similarity=0.145  Sum_probs=33.6

Q ss_pred             CcccCCCCCHhhHHHHh------cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEELDIIY------KIPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~------~~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+.+.+.++++.      ...+.+.+|+..+.++|.+.+.+...
T Consensus       286 V~nK~D~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~v~~~  334 (346)
T COG1084         286 VINKIDIADEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKT  334 (346)
T ss_pred             EEecccccchhHHHHHHHHHHhhccccccceeeeehhhHHHHHHHHHHH
Confidence            68999999887766552      22346789999999999999888775

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=86.94  E-value=0.78  Score=33.23  Aligned_cols=43  Identities=26%  Similarity=0.211  Sum_probs=29.3

Q ss_pred             CcccCCCCC---HhhHHHH---hcC----C-CeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQIS---IEELDII---YKI----P-HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~---~e~l~~l---~~~----~-~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ++||.|+..   .+++...   ...    + .++.+||.+|.|+++-++-+.+.
T Consensus       121 l~NK~D~~~~~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  121 LANKQDLPDAMSEEEIKEYLGLEKLKNKRPWSVFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             EEESTTSTTSSTHHHHHHHTTGGGTTSSSCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             EeccccccCcchhhHHHhhhhhhhcccCCceEEEeeeccCCcCHHHHHHHHHhc
Confidence            379999764   3444322   121    1 36779999999999988877664

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK07440 hypothetical protein; Provisional

Probab=86.89  E-value=1.8  Score=27.41  Aligned_cols=50  Identities=14%  Similarity=0.215  Sum_probs=31.7

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC----CCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG----KEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg----~~~~l~d~Dvv~i~~  121 (123)
                      ++.-++.+ .|+.|+....-  +..+. .|.      ...++-+-    .++.|+|||.|+|++
T Consensus        12 ~~~~~~~~-~tl~~lL~~l~--~~~~~-vav------~~N~~iv~r~~w~~~~L~~gD~IEIv~   65 (70)
T PRK07440         12 ETRTCSSG-TSLPDLLQQLG--FNPRL-VAV------EYNGEILHRQFWEQTQVQPGDRLEIVT   65 (70)
T ss_pred             EEEEcCCC-CCHHHHHHHcC--CCCCe-EEE------EECCEEeCHHHcCceecCCCCEEEEEE
Confidence            36677786 89988874321  11111 222      23444455    789999999999986

>PRK11130 moaD molybdopterin synthase small subunit; Provisional

Probab=86.74  E-value=2.2  Score=27.37  Aligned_cols=55  Identities=24%  Similarity=0.242  Sum_probs=29.8

Q ss_pred             EEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCC-CCCCceeCCCceecCCCeEEEE
Q psy2927          65 VLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSV-KHQPQKVGKEHVLNDEDVVQIV  120 (123)
Q Consensus        65 ~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~-k~~~q~vg~~~~l~d~Dvv~i~  120 (123)
                      .++.+++|+.++-..+-.... .+.-+.-.|... -..++-++.+..|+|||.|-|+
T Consensus        20 ~v~~~~~tv~~l~~~L~~~~~-~~~~~~~~~~~~~aVN~~~~~~~~~l~dgDeVai~   75 (81)
T PRK11130         20 ELAADFPTVEALRQHLAQKGD-RWALALEDGKLLAAVNQTLVSFDHPLTDGDEVAFF   75 (81)
T ss_pred             EecCCCCCHHHHHHHHHHhCc-cHHhhhcCCCEEEEECCEEcCCCCCCCCCCEEEEe
Confidence            344323899999766643321 111011011100 1133446899999999999885

>PF09138 Urm1: Urm1 (Ubiquitin related modifier); InterPro: IPR015221 Ubiquitin related modifier 1 (Urm1) is a ubiquitin related protein that modifies proteins in the yeast ubiquitin-like urmylation pathway []

Probab=86.64  E-value=0.5  Score=32.21  Aligned_cols=59  Identities=25%  Similarity=0.317  Sum_probs=30.1

Q ss_pred             cEEEeCC--CCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCce-----------eCCCceecCCCeEEEEec
Q psy2927          63 PVVLHTD--RRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQK-----------VGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g--~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~-----------vg~~~~l~d~Dvv~i~~~  122 (123)
                      .+.+|.+  ..|+.++...|...+.+.=.--.+-|.+.| +|==           =+.+|+|+|||.|.|+|.
T Consensus        21 ~v~l~~~~~~~ti~~Li~~l~~nll~~r~elF~~~~~vr-PGILvLINd~DwEl~g~~~y~l~~~D~I~FiST   92 (96)
T PF09138_consen   21 KVSLPSDGEPATIKDLIDYLRDNLLKERPELFLEGGSVR-PGILVLINDADWELLGEEDYVLKDGDNITFIST   92 (96)
T ss_dssp             EEEE-SSCSC-BHHHHHHHHCCCT-SSGHHHHBSSSSB--TTEEEEETTCEHHHHTCCCSB--TTEEEEEEET
T ss_pred             EEEcCCCCCCcCHHHHHHHHHHhccCCCHhHEecCCeEc-CcEEEEEcCccceeecCcceEcCCCCEEEEEcc
Confidence            4455511  368888877776655442100011133444 4411           177999999999999984

Structural comparisons and phylogenetic analysis of the ubiquitin superfamily has indicated that Urm1 has the most conserved structural and sequence features of the common ancestor of the entire superfamily []. ; GO: 0034227 tRNA thio-modification, 0005737 cytoplasm; PDB: 2AX5_A 2QJL_A 2PKO_A 1WGK_A 1XO3_A 2K9X_A.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=86.55  E-value=0.59  Score=39.44  Aligned_cols=15  Identities=20%  Similarity=0.284  Sum_probs=13.0

Q ss_pred             CeEEEeecCCcChHH
Q psy2927          21 HCVPLSAHHKWNFDD   35 (123)
Q Consensus        21 ~~v~ISA~~~~gld~   35 (123)
                      .+||+||.+|+|+.+
T Consensus       189 ~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        189 PFIPISGWQGDNMIE  203 (446)
T ss_pred             eEEEeecccCCCccc
Confidence            479999999999964

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=85.90  E-value=0.58  Score=33.25  Aligned_cols=41  Identities=15%  Similarity=0.039  Sum_probs=24.7

Q ss_pred             CcccCCCCCHhhHH---------HHh-cCC-CeEEEeecC------CcChHHHHHHHH
Q psy2927           1 MQKVSDQISIEELD---------IIY-KIP-HCVPLSAHH------KWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~e~l~---------~l~-~~~-~~v~ISA~~------~~gld~L~e~i~   41 (123)
                      |.||+|+.......         .+. +.. ..+.+||.+      ++|+.++.+.+.
T Consensus       105 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~~~~s~~~~~~v~~~~~~~~  162 (164)
T cd04162         105 LANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSPSRMEAVKDLLSQLI  162 (164)
T ss_pred             EEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeecCCCChhHHHHHHHHHHHHh
Confidence            57999986432222         121 111 256688888      888888776553

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=85.89  E-value=1  Score=31.14  Aligned_cols=44  Identities=16%  Similarity=0.184  Sum_probs=30.7

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||.|+...     ++...+ ..+ -..+.+||+++.|+.++...+.+.+
T Consensus       110 vg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~f~~~i~~i  160 (162)
T PF00071_consen  110 VGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEIFQELIRKI  160 (162)
T ss_dssp             EEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHHHHHHHHHH
T ss_pred             eeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            4699997653     233334 222 3578899999999999888877654

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=85.79  E-value=1.1  Score=34.26  Aligned_cols=23  Identities=13%  Similarity=-0.009  Sum_probs=18.2

Q ss_pred             CeEEEeecCCcC-hHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWN-FDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~g-ld~L~e~i~~~   43 (123)
                      ..+.+||+++.| ++++.+.....
T Consensus       151 ~y~E~SAk~~~~~V~~~F~~~~~~  174 (222)
T cd04173         151 SYVECSSRSSERSVRDVFHVATVA  174 (222)
T ss_pred             EEEEcCCCcCCcCHHHHHHHHHHH
Confidence            477899999885 99988776664

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>COG2104 ThiS Sulfur transfer protein involved in thiamine biosynthesis [Coenzyme metabolism]

Probab=85.77  E-value=2.1  Score=27.20  Aligned_cols=50  Identities=16%  Similarity=0.289  Sum_probs=33.7

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC----CCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG----KEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg----~~~~l~d~Dvv~i~~  121 (123)
                      ++.-++.+ .|+.|+-..+-  |-. =.+|.      ...|+-|.    .+|+|++||.|+|++
T Consensus        10 ~~~e~~~~-~tv~dLL~~l~--~~~-~~vav------~vNg~iVpr~~~~~~~l~~gD~ievv~   63 (68)
T COG2104          10 KEVEIAEG-TTVADLLAQLG--LNP-EGVAV------AVNGEIVPRSQWADTILKEGDRIEVVR   63 (68)
T ss_pred             EEEEcCCC-CcHHHHHHHhC--CCC-ceEEE------EECCEEccchhhhhccccCCCEEEEEE
Confidence            46777786 89988864421  110 12232      23667777    899999999999986

>PLN03126 Elongation factor Tu; Provisional

Probab=85.62  E-value=1.1  Score=38.35  Aligned_cols=43  Identities=23%  Similarity=0.308  Sum_probs=27.1

Q ss_pred             CcccCCCCCHhhH-H----HH----hc--CC----CeEEEeecCCcC------------------hHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEEL-D----II----YK--IP----HCVPLSAHHKWN------------------FDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~l-~----~l----~~--~~----~~v~ISA~~~~g------------------ld~L~e~i~~~   43 (123)
                      ++||+|+.+.+++ +    ++    ..  ++    ..+|+||.++.+                  +..|++.+.+.
T Consensus       203 vvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~  278 (478)
T PLN03126        203 FLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSY  278 (478)
T ss_pred             EEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHh
Confidence            4899999864331 1    11    11  22    478999998753                  45677777764

>KOG1191|consensus

Probab=85.26  E-value=0.53  Score=40.73  Aligned_cols=49  Identities=18%  Similarity=0.172  Sum_probs=35.5

Q ss_pred             CcccCCCCCH-hhHHH-----Hh-----cCCCeEEEeecCCcChHHHHHHHHHhhccceE
Q psy2927           1 MQKVSDQISI-EELDI-----IY-----KIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRI   49 (123)
Q Consensus         1 V~NKiD~~~~-e~l~~-----l~-----~~~~~v~ISA~~~~gld~L~e~i~~~L~~irv   49 (123)
                      |.||+|+.++ .++..     ..     .++-.+.+||.+++|+++|.+++.+.+...++
T Consensus       395 ~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~~~  454 (531)
T KOG1191|consen  395 VANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERLVV  454 (531)
T ss_pred             EechhhccCccccccCCceeccccccCcccceEEEeeechhhhHHHHHHHHHHHHHHhhc
Confidence            5799998865 22221     11     23334559999999999999999999887655

>PRK06488 sulfur carrier protein ThiS; Validated

Probab=85.14  E-value=1.4  Score=27.12  Aligned_cols=48  Identities=17%  Similarity=0.248  Sum_probs=28.9

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC----CceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK----EHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~----~~~l~d~Dvv~i~~  121 (123)
                      ++-+ .. +|+.++-..+-  +..+. .|.      -..++-+.+    ++.|+|||.|+|++
T Consensus         9 ~~~~-~~-~tl~~Ll~~l~--~~~~~-vav------avN~~iv~~~~~~~~~L~dgD~Ieiv~   60 (65)
T PRK06488          9 TLQT-EA-TTLALLLAELD--YEGNW-LAT------AVNGELVHKEARAQFVLHEGDRIEILS   60 (65)
T ss_pred             EEEc-Cc-CcHHHHHHHcC--CCCCe-EEE------EECCEEcCHHHcCccccCCCCEEEEEE
Confidence            4455 33 68888875541  22111 111      224455565    88999999999986

>PRK00413 thrS threonyl-tRNA synthetase; Reviewed

Probab=85.01  E-value=2.1  Score=37.34  Aligned_cols=51  Identities=12%  Similarity=0.175  Sum_probs=43.7

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ...+|.| +|+.|+|..++.+.......|.|       .|+-+.+++.+..++.|++++
T Consensus        11 ~~~~~~g-tt~~dia~~~~~~~~~~~v~a~v-------ng~l~dL~~~l~~d~~Vefi~   61 (638)
T PRK00413         11 VREFEAG-VTVADVAASISPGLAKAAVAGKV-------NGELVDLSTPIEEDASLEIIT   61 (638)
T ss_pred             EEEeCCC-CCHHHHHHHhhhhchhheEEEEE-------CCEEeeCCccccCCCceeeee
Confidence            4567887 99999999999998888888876       456789999999999999976

>KOG0083|consensus

Probab=84.34  E-value=1.4  Score=32.47  Aligned_cols=46  Identities=17%  Similarity=0.091  Sum_probs=31.9

Q ss_pred             CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      +.||+|+..+     ++-++|+ .+. +.+..||++|.|.|.-.-.|.+.|..
T Consensus       109 lgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~af~~ia~~l~k  161 (192)
T KOG0083|consen  109 LGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLAFLAIAEELKK  161 (192)
T ss_pred             hccccccchhhccccchHHHHHHHHCCCceeccccccccHhHHHHHHHHHHHH
Confidence            4699998653     2334452 222 46779999999999877777777654

>PRK07696 sulfur carrier protein ThiS; Provisional

Probab=84.22  E-value=2.2  Score=26.69  Aligned_cols=50  Identities=16%  Similarity=0.335  Sum_probs=30.4

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCC----ceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKE----HVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~----~~l~d~Dvv~i~~  121 (123)
                      +..++.+.+|+.|+...+  .+  ......|     ...++-+-++    +.|+|||.|+|++
T Consensus         9 ~~~~~~~~~tv~~lL~~l--~~--~~~~vav-----~vN~~iv~r~~w~~~~L~~gD~iEIv~   62 (67)
T PRK07696          9 QIEVPESVKTVAELLTHL--EL--DNKIVVV-----ERNKDILQKDDHTDTSVFDGDQIEIVT   62 (67)
T ss_pred             EEEcCCCcccHHHHHHHc--CC--CCCeEEE-----EECCEEeCHHHcCceecCCCCEEEEEE
Confidence            556666325888887532  22  2222222     2344555555    9999999999986

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=83.12  E-value=1.3  Score=31.49  Aligned_cols=41  Identities=17%  Similarity=0.162  Sum_probs=25.3

Q ss_pred             CcccCCCCCHh---hH-HHH--hcC------C-CeEEEeecCC------cChHHHHHHHH
Q psy2927           1 MQKVSDQISIE---EL-DII--YKI------P-HCVPLSAHHK------WNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~e---~l-~~l--~~~------~-~~v~ISA~~~------~gld~L~e~i~   41 (123)
                      |+||+|+....   ++ +.+  ...      + ..+++||.+|      .|+++-++-+.
T Consensus       106 v~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g~~~~~~~g~~~~~~wl~  165 (167)
T cd04161         106 LANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIEGLGKKIDPSIVEGLRWLL  165 (167)
T ss_pred             EEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEeEceeCCCCccccCHHHHHHHHh
Confidence            58999986432   22 211  111      1 3566999998      78888776554

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>COG1977 MoaD Molybdopterin converting factor, small subunit [Coenzyme metabolism]

Probab=83.09  E-value=1.9  Score=28.17  Aligned_cols=20  Identities=30%  Similarity=0.310  Sum_probs=17.4

Q ss_pred             CceeCCCceecCCCeEEEEe
Q psy2927         102 PQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus       102 ~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ...+|.++.|.|||.|-|+-
T Consensus        60 ~~~~~~~t~L~dGDeVa~~P   79 (84)
T COG1977          60 EFLVGLDTPLKDGDEVAFFP   79 (84)
T ss_pred             eeeccccccCCCCCEEEEeC
Confidence            46799999999999999863

>COG1161 Predicted GTPases [General function prediction only]

Probab=83.04  E-value=1.2  Score=36.06  Aligned_cols=42  Identities=10%  Similarity=-0.057  Sum_probs=29.7

Q ss_pred             CcccCCCCCHhhHHHH----h-cC-CCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISIEELDII----Y-KI-PHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~-~~-~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |+||+|+++...++..    . .. ...+++|+.++.+...+..++..
T Consensus        67 vlNK~DL~~~~~~~~W~~~~~~~~~~~~~~v~~~~~~~~~~i~~~~~~  114 (322)
T COG1161          67 VLNKADLAPKEVTKKWKKYFKKEEGIKPIFVSAKSRQGGKKIRKALEK  114 (322)
T ss_pred             EEehhhcCCHHHHHHHHHHHHhcCCCccEEEEeecccCccchHHHHHH
Confidence            6899999987765433    1 21 24688999999998888854443

>KOG0460|consensus

Probab=82.91  E-value=1.5  Score=36.92  Aligned_cols=65  Identities=18%  Similarity=0.139  Sum_probs=30.8

Q ss_pred             cccCCCC-CHhhHH-------HH-h--cCC----CeEEEee---cCCcChHHHHHHHHHhhccceEEeCCCCCCCCCccc
Q psy2927           2 QKVSDQI-SIEELD-------II-Y--KIP----HCVPLSA---HHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSP   63 (123)
Q Consensus         2 ~NKiD~~-~~e~l~-------~l-~--~~~----~~v~ISA---~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~   63 (123)
                      +||+|++ ++|.++       ++ .  .|+    ++|.=||   +.|.+-+-=.++|.++|...--|.--|-+  +.+.|
T Consensus       177 iNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~R--~~~~p  254 (449)
T KOG0460|consen  177 INKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPER--DLDKP  254 (449)
T ss_pred             EecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCccc--ccCCC
Confidence            6999999 444321       11 2  233    3566454   44532222223344444433333322222  35668


Q ss_pred             EEEeC
Q psy2927          64 VVLHT   68 (123)
Q Consensus        64 ~~l~~   68 (123)
                      |++|-
T Consensus       255 Fl~pi  259 (449)
T KOG0460|consen  255 FLLPI  259 (449)
T ss_pred             ceeeh
Confidence            88775

>PF14451 Ub-Mut7C: Mut7-C ubiquitin

Probab=82.37  E-value=1.3  Score=29.17  Aligned_cols=47  Identities=17%  Similarity=0.236  Sum_probs=34.0

Q ss_pred             cEEEeCCCCCHHHHHHHh---HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKL---HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~I---H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      .+-+..+ +|++|+.+.+   |++..     .+      --+|+.++.+|.++|||.|.+.-
T Consensus        26 ~~~~~~~-~tvkd~IEsLGVP~tEV~-----~i------~vNG~~v~~~~~~~~Gd~v~V~P   75 (81)
T PF14451_consen   26 THPFDGG-ATVKDVIESLGVPHTEVG-----LI------LVNGRPVDFDYRLKDGDRVAVYP   75 (81)
T ss_pred             EEecCCC-CcHHHHHHHcCCChHHeE-----EE------EECCEECCCcccCCCCCEEEEEe
Confidence            3444554 9999998765   55543     22      12778899999999999999863

>KOG0078|consensus

Probab=82.11  E-value=2  Score=33.16  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=26.6

Q ss_pred             CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHH
Q psy2927           1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKM   40 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i   40 (123)
                      |.||+|+...     +.-+.++ ++. ..+.+||+++.|+++..-.+
T Consensus       123 vGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~NI~eaF~~L  169 (207)
T KOG0078|consen  123 VGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFNIEEAFLSL  169 (207)
T ss_pred             eeccccccccccccHHHHHHHHHHhCCeEEEccccCCCCHHHHHHHH
Confidence            5799998753     3334553 332 36779999999998844333

>cd04167 Snu114p Snu114p subfamily

Probab=80.63  E-value=1.4  Score=32.72  Aligned_cols=23  Identities=13%  Similarity=0.244  Sum_probs=16.5

Q ss_pred             eEEEeecCCcChH--------HHHHHHHHhh
Q psy2927          22 CVPLSAHHKWNFD--------DLLEKMWEYL   44 (123)
Q Consensus        22 ~v~ISA~~~~gld--------~L~e~i~~~L   44 (123)
                      +++.||..+|+++        +|++.|.+..
T Consensus       180 v~~~s~~~~w~~~~~~~~~~~~~~~~~~~~~  210 (213)
T cd04167         180 VCFASSKFGFCFTLESFAKKYGLVDSIVSNI  210 (213)
T ss_pred             EEEEecCCCeEEecHHHHhhhhHHHHHHhhC
Confidence            6678999999886        5666555543

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
4a9a_A	376	Structure Of Rbg1 In Complex With Tma46 Dfrp Domain		2e-41
2eki_A	93	Solution Structures Of The Tgs Domain Of Human Deve		5e-31

>pdb|4A9A|A Chain A, Structure Of Rbg1 In Complex With Tma46 Dfrp Domain Length = 376

Iteration: 1
 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 69/117 (58%), Positives = 95/117 (81%)
Query: 6   DQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVV 65
           D +SIEEL+++Y+IP+ VP+S+   WN D+LL+ MW+ L L RIYTKPKGQ+PD+  PVV
Sbjct: 260 DSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVV 319
Query: 66  LHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK 122
           L +DR S++DFCN++H+++  +F+ ALV+GSSVKHQPQ VG  H+L DEDVV I+KK
Sbjct: 320 LRSDRCSVKDFCNQIHKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK 376

>pdb|2EKI|A Chain A, Solution Structures Of The Tgs Domain Of Human Developmentally-Regulated Gtp-Binding Protein 1 Length = 93

Iteration: 1
 Score =  129 bits (324), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 60/80 (75%), Positives = 67/80 (83%)
Query: 43  YLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQP 102
           YLKL RIYTKPKGQLPDY SPVVL   R ++EDFC K+H+ + KEFKYALVWG SVKH P
Sbjct: 8   YLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLSVKHNP 67
Query: 103 QKVGKEHVLNDEDVVQIVKK 122
           QKVGK+H L DEDV+QIVKK
Sbjct: 68  QKVGKDHTLEDEDVIQIVKK 87

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
2eki_A	93	DRG 1, developmentally-regulated GTP-binding prote	5e-42

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens} Length = 93

 Score =  133 bits (335), Expect = 5e-42
 Identities = 60/85 (70%), Positives = 67/85 (78%)

Query: 38  EKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSS 97
                YLKL RIYTKPKGQLPDY SPVVL   R ++EDFC K+H+ + KEFKYALVWG S
Sbjct: 3   SGSSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLS 62

Query: 98  VKHQPQKVGKEHVLNDEDVVQIVKK 122
           VKH PQKVGK+H L DEDV+QIVKK
Sbjct: 63  VKHNPQKVGKDHTLEDEDVIQIVKK 87

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
2eki_A	93	DRG 1, developmentally-regulated GTP-binding prote	100.0
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	100.0
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.92
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.91
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.9
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.89
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	99.87
3hvz_A	78	Uncharacterized protein; alpha-beta protein, struc	99.32
2kmm_A	73	Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohy	98.11
1wb1_A	482	Translation elongation factor SELB; selenocysteine	98.07
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.98
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	97.32
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	97.26
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.24
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	97.11
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.07
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	97.06
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.04
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	97.04
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	97.02
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	97.01
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	97.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	97.0
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	97.0
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.99
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.99
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.98
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.95
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.94
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.94
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.93
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	96.93
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.93
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.91
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.9
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.9
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.89
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	96.88
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.87
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.87
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	96.85
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.84
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.84
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.83
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.83
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.82
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.81
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	96.81
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.81
1wwt_A	88	Threonyl-tRNA synthetase, cytoplasmic; TGS domain,	96.8
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	96.8
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.8
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.79
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	96.79
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.77
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.76
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.75
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.75
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.74
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.74
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.73
2hj1_A	97	Hypothetical protein; structural genomics, PSI, pr	96.73
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.72
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.72
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	96.7
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.69
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.69
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.69
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.69
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.68
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	96.68
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.67
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	96.67
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.66
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.64
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	96.64
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.62
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.6
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	96.59
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.59
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.59
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.59
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	96.59
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	96.58
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.58
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.58
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.57
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.56
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.54
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.54
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.54
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	96.54
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.52
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.52
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.51
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.49
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.49
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.48
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.48
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.47
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.46
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.45
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.44
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	96.44
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.43
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.43
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.42
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.42
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.41
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.4
1tke_A	224	Threonyl-tRNA synthetase; ligase; 1.46A {Escherich	96.37
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	96.36
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	96.36
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.36
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.35
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.33
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	96.32
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.32
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.3
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.3
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.27
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.25
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.25
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	96.2
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.18
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.18
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.13
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.12
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.12
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	96.12
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.06
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	96.06
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.02
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	96.02
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.01
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.99
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.92
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.89
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.89
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.88
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.86
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	95.85
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	95.83
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	95.8
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	95.78
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.76
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.75
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.72
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.62
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.62
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	95.6
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	95.55
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	95.53
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	95.5
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.46
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.46
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.39
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.32
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	95.24
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	95.19
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	95.17
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	95.1
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.06
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.01
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	95.01
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.99
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	94.85
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	94.72
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.68
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	94.53
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	94.47
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	94.44
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	94.4
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	94.25
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.23
2q5w_D	77	Molybdopterin converting factor, subunit 1; MOCO,	94.19
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	94.02
1vjk_A	98	Molybdopterin converting factor, subunit 1; struct	93.8
3po0_A	89	Small archaeal modifier protein 1; ubiquitin-like	93.56
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	93.41
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	92.78
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	92.67
2g1e_A	90	Hypothetical protein TA0895; MOAD, molybdopterin,	92.66
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	92.42
2cu3_A	64	Unknown function protein; thermus thermophilus HB8	92.22
1ryj_A	70	Unknown; beta/alpha protein, structural genomics,	92.18
1rws_A	77	Hypothetical protein PF1061; residual dipolar coup	91.93
1f0z_A	66	THis protein; ubiquitin fold, transport protein; N	91.84
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	91.79
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	91.71
3rpf_C	74	Molybdopterin converting factor, subunit 1 (MOAD);	91.48
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	91.14
1fm0_D	81	Molybdopterin convertin factor, subunit 1; molybde	90.95
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	90.71
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	90.54
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	90.3
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	89.55
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	89.52
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	89.3
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	89.29
2k5p_A	78	THis protein, thiamine-biosynthesis protein; NESG,	88.89
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	88.61
1tyg_B	87	YJBS; alpha beta barrel, protein-protein complex,	87.42
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	87.08
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	85.69
2k9x_A	110	Tburm1, uncharacterized protein; unknown function;	85.28
2l52_A	99	Methanosarcina acetivorans SAMP1 homolog; beta-grA	84.61
2qjl_A	99	URM1, ubiquitin-related modifier 1; ubiquitin-like	83.38
2kl0_A	73	Putative thiamin biosynthesis THis; structural gen	83.33
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	83.08
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	81.46
3dwg_C	93	9.5 kDa culture filtrate antigen CFP10A; sulfur ca	80.32

>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}

Probab=100.00  E-value=4.7e-39  Score=216.67  Aligned_cols=81  Identities=73%  Similarity=1.201  Sum_probs=79.0

Q ss_pred             HHhhccceEEeCCCCCCCCCcccEEE-eCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927          41 WEYLKLTRIYTKPKGQLPDYQSPVVL-HTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQI  119 (123)
Q Consensus        41 ~~~L~~irvytk~~g~~pd~~~~~~l-~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i  119 (123)
                      |+.|++||||||++|+.||+.+|++| |+| +||+|+|++||++|.++|+||+|||+|+||+|||||++|+|+|||||+|
T Consensus         6 ~~~L~lIrVYtk~~G~~pd~~dpviL~~~G-sTv~Dfa~~IH~di~~~fkyA~VwG~saK~~~qrVgldh~L~d~DVV~I   84 (93)
T 2eki_A            6 SGYLKLVRIYTKPKGQLPDYTSPVVLPYSR-TTVEDFCMKIHKNLIKEFKYALVWGLSVKHNPQKVGKDHTLEDEDVIQI   84 (93)
T ss_dssp             SSSCCEEEEEECCTTSCCCSSSCEEEETTS-CCHHHHHHHHCTTCTTTEEEEEEBSTTSSSSSEEECSSCCCCSSEEECE
T ss_pred             hhhcCeEEEEeCCCCCCCCCCCCEEEecCC-CCHHHHHHHHHHHHHhhccEEEEecccccCCCEECCCCcEecCCCEEEE
Confidence            78999999999999999999999999 887 9999999999999999999999999999999999999999999999999


Q ss_pred             Eec
Q psy2927         120 VKK  122 (123)
Q Consensus       120 ~~~  122 (123)
                      +++
T Consensus        85 v~~   87 (93)
T 2eki_A           85 VKK   87 (93)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            986

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.5e-35  Score=237.06  Aligned_cols=122  Identities=57%  Similarity=1.067  Sum_probs=116.9

Q ss_pred             CcccCCCCCHhhHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHh
Q psy2927           1 MQKVSDQISIEELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKL   80 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~I   80 (123)
                      ++||+|.++.++++.+.+.++.+++|+..+.|+++|.+++|+.|+++++||+++++.|+++.|..++++++|+.|+|+.|
T Consensus       255 v~nKid~~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D~a~~i  334 (376)
T 4a9a_A          255 VLNKIDSLSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKDFCNQI  334 (376)
T ss_dssp             EEECGGGSCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHHHHHHH
T ss_pred             EEecccccCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHHHHHHH
Confidence            47999999999988887778899999999999999999999999999999999999999999999998778999999999


Q ss_pred             HHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          81 HRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        81 H~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      |+||.++|+||+|||+++|+.||++|+||+|+|||||+|++|
T Consensus       335 h~d~~~~F~~a~v~Gs~~K~~~r~eGkdyvv~DGDVi~iv~k  376 (376)
T 4a9a_A          335 HKSLVDDFRNALVYGSSVKHQPQYVGLSHILEDEDVVTILKK  376 (376)
T ss_dssp             CGGGGGGEEEEEEESTTSSSSSEEECTTCBCCTTCEEEEEEC
T ss_pred             HHHHHHhhhHhhhcCcccCCCCCccCCCcEEcCCCEEEEEeC
Confidence            999999999999999999999999999999999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.92  E-value=6.2e-26  Score=183.80  Aligned_cols=116  Identities=16%  Similarity=0.181  Sum_probs=94.6

Q ss_pred             CcccCC--CCC---HhhHHHHh-----cCCCeEEEeecC----------------------CcChHHHHHHHHHhhccce
Q psy2927           1 MQKVSD--QIS---IEELDIIY-----KIPHCVPLSAHH----------------------KWNFDDLLEKMWEYLKLTR   48 (123)
Q Consensus         1 V~NKiD--~~~---~e~l~~l~-----~~~~~v~ISA~~----------------------~~gld~L~e~i~~~L~~ir   48 (123)
                      |+||.|  +.+   ...++.+.     ...+++++||+.                      +.|++.|++++|+.|++++
T Consensus       207 v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~  286 (368)
T 2dby_A          207 VANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLT  286 (368)
T ss_dssp             EEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEE
T ss_pred             eccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEE
Confidence            478887  333   22333331     124689999876                      4789999999999999999


Q ss_pred             EEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecCCCe
Q psy2927          49 IYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLNDEDV  116 (123)
Q Consensus        49 vytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d~Dv  116 (123)
                      +||.+    |+..+||++++| +|++++|++||+||+++|++|.||+.          .+|..|  |++|+||+|+||||
T Consensus       287 ~ft~g----~~e~~aw~i~~g-~ta~~~a~~IH~d~~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi  361 (368)
T 2dby_A          287 FFTAG----EKEVRAWTVRRG-TKAPRAAGEIHSDMERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDV  361 (368)
T ss_dssp             EEEES----SSCEEEEEEETT-CBHHHHHHHHCHHHHHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEE
T ss_pred             EECCC----CCCcceEEecCC-CcHHHHHHhhHHHHHhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCE
Confidence            99976    557889999998 99999999999999999999999972          266556  77899999999999


Q ss_pred             EEEEe
Q psy2927         117 VQIVK  121 (123)
Q Consensus       117 v~i~~  121 (123)
                      |+|.-
T Consensus       362 ~~~~f  366 (368)
T 2dby_A          362 IYVLF  366 (368)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            99863

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.91  E-value=1.3e-25  Score=183.06  Aligned_cols=115  Identities=22%  Similarity=0.355  Sum_probs=93.0

Q ss_pred             CcccCCCCCHhhHHHHh-c----CCCeEEEeecCCcChHHH---------------------------------------
Q psy2927           1 MQKVSDQISIEELDIIY-K----IPHCVPLSAHHKWNFDDL---------------------------------------   36 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~-~----~~~~v~ISA~~~~gld~L---------------------------------------   36 (123)
                      |+||+|+...+.++.+. .    ...+++|||..+.|+++|                                       
T Consensus       220 v~NK~D~~~~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~  299 (397)
T 1wxq_A          220 AANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDR  299 (397)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSS
T ss_pred             EEeCccccchHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHH
Confidence            58999988555555542 1    235899999998887542                                       


Q ss_pred             ---------H-HHHHHhhccceEEeC--------CCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCC
Q psy2927          37 ---------L-EKMWEYLKLTRIYTK--------PKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSV   98 (123)
Q Consensus        37 ---------~-e~i~~~L~~irvytk--------~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~   98 (123)
                               + +++|+.|+++++||.        ++|.  +..++|+||+| +|++|+|++||+||.++|++|.    ++
T Consensus       300 ~g~~g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~--~~~~~~~l~~G-~t~~d~a~~iH~d~~~~f~~a~----~~  372 (397)
T 1wxq_A          300 FGSTGVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGN--VLPHVFLMKKG-STPRDLAFKVHTDLGKGFLYAI----NA  372 (397)
T ss_dssp             SSSCSHHHHHHHHHHTTSCEEEEEEESCC-----CCSC--SSCCCEEEETT-CCHHHHHHHHCHHHHHTEEEEE----ET
T ss_pred             hCcchHHHHHHHHHHHHhCCeEEEeecccccccCCcCc--ccceeEEeCCC-CCHHHHHHHHhHHHHhhhhhhH----Hh
Confidence                     2 477999999999993        4443  35569999998 9999999999999999999998    34


Q ss_pred             CCCCceeCCCceecCCCeEEEEecC
Q psy2927          99 KHQPQKVGKEHVLNDEDVVQIVKKV  123 (123)
Q Consensus        99 k~~~q~vg~~~~l~d~Dvv~i~~~~  123 (123)
                      + .+||+|++|+|+|||||+|+++.
T Consensus       373 ~-~~~~~g~~~~l~dgDvv~i~~~~  396 (397)
T 1wxq_A          373 R-TKRRVGEDYELQFNDIVKIVSVT  396 (397)
T ss_dssp             T-TCSBCCTTCCCCTTEEEEEEEC-
T ss_pred             c-CCEEcCCCccccCCCEEEEEeCC
Confidence            4 88999999999999999999863

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.90  E-value=1.8e-24  Score=175.36  Aligned_cols=116  Identities=18%  Similarity=0.189  Sum_probs=93.8

Q ss_pred             CcccCCCCC--HhhHHHHh----c-CCCeEEEeecC----------------------CcChHHHHHHHHHhhccceEEe
Q psy2927           1 MQKVSDQIS--IEELDIIY----K-IPHCVPLSAHH----------------------KWNFDDLLEKMWEYLKLTRIYT   51 (123)
Q Consensus         1 V~NKiD~~~--~e~l~~l~----~-~~~~v~ISA~~----------------------~~gld~L~e~i~~~L~~irvyt   51 (123)
                      |+||.|.-.  .+.++.+.    . ...+|++||..                      +.|+++|++++|+.|+++++||
T Consensus       205 v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft  284 (363)
T 1jal_A          205 IANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFT  284 (363)
T ss_dssp             EEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEE
T ss_pred             EEecccccccccHHHHHHHHHHHHcCCCEEEechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEEC
Confidence            478888531  22333331    1 23589999764                      3799999999999999999999


Q ss_pred             CCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecCCCeEEE
Q psy2927          52 KPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLNDEDVVQI  119 (123)
Q Consensus        52 k~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d~Dvv~i  119 (123)
                      .++    +..+||++++| +|++++|++||+||+++|++|.||+.          .+|..|  |++|+||+|+|||||+|
T Consensus       285 ~g~----~e~raw~i~~G-~ta~~aAg~IH~D~~~gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f  359 (363)
T 1jal_A          285 AGV----KEVRAWTVSVG-ATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHF  359 (363)
T ss_dssp             ECS----SEEEEEEEETT-CBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEE
T ss_pred             CCC----CCcceeEecCC-CcHHHHHHhhHHHHHhccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEE
Confidence            764    47889999998 99999999999999999999999972          266556  77899999999999998


Q ss_pred             Ee
Q psy2927         120 VK  121 (123)
Q Consensus       120 ~~  121 (123)
                      .-
T Consensus       360 ~f  361 (363)
T 1jal_A          360 RF  361 (363)
T ss_dssp             ES
T ss_pred             Ee
Confidence            64

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.89  E-value=3.3e-24  Score=175.50  Aligned_cols=95  Identities=20%  Similarity=0.319  Sum_probs=86.2

Q ss_pred             CeEEEeecCC---------------------cChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHH
Q psy2927          21 HCVPLSAHHK---------------------WNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNK   79 (123)
Q Consensus        21 ~~v~ISA~~~---------------------~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~   79 (123)
                      .+|++||..+                     .||+.|.+++|+.|+++++||+++    |..+||++++| +|++++|++
T Consensus       259 ~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~~~l~~li~~~~~~L~li~~fT~g~----~evrawti~~g-~ta~~aAg~  333 (396)
T 2ohf_A          259 LVIPFSGALELKLQELSAEERQKYLEANMTQSALPKIIKAGFAALQLEYFFTAGP----DEVRAWTIRKG-TKAPQAAGK  333 (396)
T ss_dssp             EEEEECHHHHHHHHHSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEEESS----SEEEEEEEETT-CBHHHHHHT
T ss_pred             eEEEEEcHHHHHHhhCCHHHHHHHHHHhCCCchHHHHHHHHHHHhCCEEEECCCC----CcceeEEecCC-CcHHHHHhh
Confidence            4899999864                     569999999999999999999984    57899999998 999999999


Q ss_pred             hHHHHHhhcceeEEe--------cC--CCCCCC--ceeCCCceecCCCeEEEE
Q psy2927          80 LHRTIAKEFKYALVW--------GS--SVKHQP--QKVGKEHVLNDEDVVQIV  120 (123)
Q Consensus        80 IH~d~~~~f~~A~vw--------g~--s~k~~~--q~vg~~~~l~d~Dvv~i~  120 (123)
                      ||+||+++|++|.||        |.  .+|..|  |++|+||+|+|||||+|-
T Consensus       334 IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~  386 (396)
T 2ohf_A          334 IHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFK  386 (396)
T ss_dssp             TCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEE
T ss_pred             hHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEE
Confidence            999999999999999        64  466666  999999999999999994

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=99.87  E-value=4e-23  Score=168.73  Aligned_cols=95  Identities=15%  Similarity=0.203  Sum_probs=84.0

Q ss_pred             CeEEEeecC---------------------CcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHH
Q psy2927          21 HCVPLSAHH---------------------KWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNK   79 (123)
Q Consensus        21 ~~v~ISA~~---------------------~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~   79 (123)
                      .+|++||..                     +.|++.|+++.|+.|+++++||.++.    ..++|++++| +|++++|+.
T Consensus       261 ~~v~~sa~~E~~l~~l~~~~~~~~l~~~g~~~gl~~~i~~~~~~L~l~~~ft~g~~----e~rawti~~G-~~a~~aag~  335 (392)
T 1ni3_A          261 TLIPMSVAFEERLTNFTEEEAIEECKKLNTKSMLPKIIVTGYNALNLINYFTCGED----EVRSWTIRKG-TKAPQAAGV  335 (392)
T ss_dssp             CEEEECHHHHHHHTTSCHHHHHHHHHHTTCCCSHHHHHHHHHHHTTEEEEEECCSS----EEEEEEEETT-CBHHHHHHH
T ss_pred             eEEEEEhHHHHHHhhCCHHHHHHHHHHhCCcccHHHHHHHHHHHhCCEEEECCCCC----cceeEEeCCC-CcHHHHccc
Confidence            589999997                     68999999999999999999998865    6789999998 999999999


Q ss_pred             hHHHHHhhcceeEEe--------cCC--CCC-CCce-eCCCceecCCCeEEEE
Q psy2927          80 LHRTIAKEFKYALVW--------GSS--VKH-QPQK-VGKEHVLNDEDVVQIV  120 (123)
Q Consensus        80 IH~d~~~~f~~A~vw--------g~s--~k~-~~q~-vg~~~~l~d~Dvv~i~  120 (123)
                      ||+||+++|++|.||        |..  +|. ..+| .|++|+|+||||++|.
T Consensus       336 IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~  388 (392)
T 1ni3_A          336 IHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWK  388 (392)
T ss_dssp             HCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC
T ss_pred             cchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEE
Confidence            999999999999999        532  343 2355 9999999999999874

>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}

Probab=99.32  E-value=6.7e-12  Score=81.62  Aligned_cols=52  Identities=13%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      .+.+|+| +|+.|+|+.||+++.+++.+|.|       .||.|+++|+|++||+|+|++.
T Consensus        17 ~~~lp~G-aT~~D~A~~Ih~~lg~~~v~AkV-------NG~~v~L~~~L~~gd~VeIit~   68 (78)
T 3hvz_A           17 VISLPIG-STVIDFAYAIHSAVGNRMIGAKV-------DGRIVPIDYKVKTGEIIDVLTT   68 (78)
T ss_dssp             EEEEETT-CBHHHHHHHHCHHHHHTEEEEEE-------TTEEECTTCBCCTTCBEEEEEC
T ss_pred             EEEecCC-CCHHHHHHHhhhhhhcceEEEEE-------CCEEcCCCcccCCCCEEEEEcc
Confidence            7899998 99999999999999999999987       5689999999999999999975

>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}

Probab=98.11  E-value=6.7e-06  Score=51.06  Aligned_cols=52  Identities=25%  Similarity=0.237  Sum_probs=45.4

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      +..++.| +|+.|++..+|.++.+....|.|       .|+.+.++++|++||.|+|++.
T Consensus        12 ~~~~~~g-~T~~dla~~i~~~l~~~~vaa~v-------Ng~lvdl~~~L~~~~~Veivt~   63 (73)
T 2kmm_A           12 IKRLPQG-ATALDFAYSLHSDLGDHCIGAKV-------NHKLVPLSYVLNSGDQVEVLSS   63 (73)
T ss_dssp             EEEECTT-CBHHHHHHHHCSHHHHTEEEEEE-------TTEECCTTCBCCSSSBEEEEEC
T ss_pred             EEEcCCC-CcHHHHHHHHhhccccceEEEEE-------CCEEeCCCcCcCCCCEEEEEEC
Confidence            6788897 99999999999999988766654       6788999999999999999874

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=98.07  E-value=2.1e-07  Score=77.08  Aligned_cols=116  Identities=15%  Similarity=0.172  Sum_probs=72.3

Q ss_pred             CcccCCCCCHhhHH-------HH-hc-----CCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCC--CcccEE
Q psy2927           1 MQKVSDQISIEELD-------II-YK-----IPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPD--YQSPVV   65 (123)
Q Consensus         1 V~NKiD~~~~e~l~-------~l-~~-----~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd--~~~~~~   65 (123)
                      |+||+|+.+++.++       .+ ..     ..+++++||.+|.|+++|++.|.+.++. ..++..+..++.  .++.+.
T Consensus       131 viNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~~-~~~~~~~~~~~~~~v~~v~~  209 (482)
T 1wb1_A          131 VITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN-AEIIRNTESYFKMPLDHAFP  209 (482)
T ss_dssp             EEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH-SCCCCCSSSCCBCBCSCEEC
T ss_pred             EEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhcC-ccccccccccccccceeEEE
Confidence            58999998754322       11 11     1368999999999999999999998763 222322221110  122222


Q ss_pred             Ee-----------CCCCCHHHHHHHhHHHHHhhcceeEEecCCC--CCCCceeCCCc------eecCCCeE
Q psy2927          66 LH-----------TDRRSIEDFCNKLHRTIAKEFKYALVWGSSV--KHQPQKVGKEH------VLNDEDVV  117 (123)
Q Consensus        66 l~-----------~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~--k~~~q~vg~~~------~l~d~Dvv  117 (123)
                      ++           .|.-+++|.+...+.+..-+.+...+|+.+.  ...||+||..+      .++.||++
T Consensus       210 ~~g~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~V~~i~~~~~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl  280 (482)
T 1wb1_A          210 IKGAGTVVTGTINKGIVKVGDELKVLPINMSTKVRSIQYFKESVMEAKAGDRVGMAIQGVDAKQIYRGXIL  280 (482)
T ss_dssp             CSSCCCEECCCCCBSCCCSSEEECCTTTCCCEEECCBCGGGSCBCCCCSSCCCCEECSSCCSSCCCSSCBC
T ss_pred             ecCCceEEEEEEEEeEEeeCCEEEECCCCcEEEEeEEEECCeEeeEecCCCEEEEEecCCCHhhccccceE
Confidence            22           2223566666556666556777777887643  34789998764      47889987

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.98  E-value=5.5e-07  Score=73.75  Aligned_cols=115  Identities=15%  Similarity=0.156  Sum_probs=76.5

Q ss_pred             CcccCCCCCHhhHHHH----hcC-CCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCC-CCCCCcccEEEe-------
Q psy2927           1 MQKVSDQISIEELDII----YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKG-QLPDYQSPVVLH-------   67 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g-~~pd~~~~~~l~-------   67 (123)
                      |+||+|+...+.++.+    ... ..++++||.+++|+++|.+.|++.+...+.++..+. -.|+...++.+.       
T Consensus       275 VlNKlDl~~~~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~  354 (416)
T 1udx_A          275 ALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTPPPEMPKPVPRKEVQAGVEVVPVAEGVY  354 (416)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSCCCCCCCCCC----CCCCEEEEEETTEE
T ss_pred             EEECCChhhHHHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcccccccccccccccCCCcEEEEcCCCeE
Confidence            5799998876444333    121 258999999999999999999999987665432111 001112244442       


Q ss_pred             --CCCCCHHHHHHHhHHHHHhhc-ceeEEecCCCCCCCceeCCCceecCCCeEEE
Q psy2927          68 --TDRRSIEDFCNKLHRTIAKEF-KYALVWGSSVKHQPQKVGKEHVLNDEDVVQI  119 (123)
Q Consensus        68 --~g~~tv~d~a~~IH~d~~~~f-~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i  119 (123)
                        .| ..++.++.+.+-+-.+.+ .++..|.+..-...+   +++-+++||.|.|
T Consensus       355 ~v~g-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~l---~~~g~~~gd~v~i  405 (416)
T 1udx_A          355 EVRA-PEVERYLARIKGDLMEAAGYLQEVFRRQGVEAAL---RAKGVRAGDLVRI  405 (416)
T ss_dssp             EEEC-HHHHHHHTTEEECTGGGHHHHHHHHHHTTHHHHH---HTTTCCTTCEEEE
T ss_pred             EEeC-hHHHHHHHhcCCCCHHHHHHHHHHHHHCCHHHHH---HHcCCCCCCEEEE
Confidence              23 789999999988888887 678888643221112   5666899999988

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=97.32  E-value=0.00019  Score=49.93  Aligned_cols=45  Identities=20%  Similarity=0.194  Sum_probs=33.9

Q ss_pred             CcccCCCCCHhhHH----HH----hcC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELD----II----YKI--PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~l----~~~--~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.+++.    .+    ...  ...+++||++|.|+++|.+.+.+.+.
T Consensus       139 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  193 (195)
T 3pqc_A          139 VLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK  193 (195)
T ss_dssp             EEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             EEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhh
Confidence            57999998654322    12    121  36899999999999999999998874

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=97.26  E-value=0.00012  Score=49.39  Aligned_cols=45  Identities=29%  Similarity=0.492  Sum_probs=33.9

Q ss_pred             CcccCCCCCHh-hHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE-ELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e-~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...+ +...+.  .....+++||+++.|+++|.+.+.+.|+
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  161 (161)
T 2dyk_A          114 VATKVDDPKHELYLGPLYGLGFGDPIPTSSEHARGLEELLEAIWERLP  161 (161)
T ss_dssp             EEECCCSGGGGGGCGGGGGGSSCSCEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEECcccccchHhHHHHHhCCCCCeEEEecccCCChHHHHHHHHHhCc
Confidence            57999987543 333332  2336899999999999999999988763

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.24  E-value=0.00021  Score=51.34  Aligned_cols=46  Identities=15%  Similarity=0.133  Sum_probs=34.2

Q ss_pred             CcccCCCCCHhhH----H----HHhc--------CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEEL----D----IIYK--------IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l----~----~l~~--------~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+....++    +    .+..        ...++++||++|.|+++|.+.|.+.+..
T Consensus       150 v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          150 LLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            5899999876542    1    1212        1257899999999999999999998853

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=97.11  E-value=0.00036  Score=47.41  Aligned_cols=46  Identities=20%  Similarity=0.116  Sum_probs=33.3

Q ss_pred             CcccCCCCCHh-----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE-----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+..     +...+. . ....+++||++|.|+++|.+.+.+.+..
T Consensus       112 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  164 (166)
T 3q72_A          112 VGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRL  164 (166)
T ss_dssp             EEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHh
Confidence            57999987432     223332 2 2257889999999999999999987643

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.07  E-value=0.00021  Score=56.78  Aligned_cols=46  Identities=20%  Similarity=0.199  Sum_probs=36.4

Q ss_pred             CcccCCCCCHh-hHHHH-hcC---CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE-ELDII-YKI---PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e-~l~~l-~~~---~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...+ .++.+ ..+   ..++++||.+++|+++|++.|++.+..
T Consensus       280 V~NK~Dl~~~~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          280 VANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             EEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             EEECccCCCCHHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            58999998654 34555 222   358899999999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.06  E-value=0.00036  Score=48.22  Aligned_cols=45  Identities=18%  Similarity=0.134  Sum_probs=32.4

Q ss_pred             CcccCCCCCH---hhHHHH-h--cCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELDII-Y--KIP----HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l-~--~~~----~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...   +++... .  ...    ..+++||++|.|+++|.+.+.+.+.
T Consensus       125 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  179 (183)
T 1moz_A          125 FANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK  179 (183)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            5899998753   333322 1  111    4788999999999999999988764

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.04  E-value=0.0003  Score=55.53  Aligned_cols=46  Identities=13%  Similarity=0.110  Sum_probs=34.4

Q ss_pred             CcccCCCCCHhhH----HHHh------c------CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEEL----DIIY------K------IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l~------~------~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+......    ..+.      .      .++++++||.+|.|+++|.+.|.+.+..
T Consensus       223 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          223 VVNKADGEHHKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             EEECCCGGGHHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             EEECCCCcChhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5899998754322    1221      1      2468999999999999999999998864

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=97.04  E-value=0.00034  Score=47.41  Aligned_cols=45  Identities=11%  Similarity=0.014  Sum_probs=31.6

Q ss_pred             CcccCCCCCH---hhHHH-Hh-c-C--C--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELDI-IY-K-I--P--HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~-l~-~-~--~--~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...   +++.. +. . .  .  ..+++||++|.|+++|.+.+.+.+.
T Consensus       107 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  161 (164)
T 1r8s_A          107 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR  161 (164)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             EEECcCCcCCCCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHh
Confidence            5799998754   22321 11 1 1  1  3788999999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=97.02  E-value=0.00046  Score=48.30  Aligned_cols=45  Identities=11%  Similarity=0.147  Sum_probs=33.8

Q ss_pred             CcccCCCCCHhhH----HHH----hc--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEEL----DII----YK--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l----~~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+..++    +.+    ..  ....+++||++|.|+++|.+.|.+.+.
T Consensus       140 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          140 IATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            5899999876443    222    11  235789999999999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=97.01  E-value=0.00076  Score=46.81  Aligned_cols=45  Identities=9%  Similarity=-0.053  Sum_probs=33.4

Q ss_pred             CcccCCCCCH---hhHHHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...   +++..+. .  ....+++||++|.|+++|.+.+.+.+.
T Consensus       141 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~  191 (198)
T 3t1o_A          141 QVNKRDLPDALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVL  191 (198)
T ss_dssp             EEECTTSTTCCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEEchhcccccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHH
Confidence            5799998643   4444442 2  226889999999999999999888663

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=97.00  E-value=0.00061  Score=46.03  Aligned_cols=44  Identities=14%  Similarity=0.091  Sum_probs=32.8

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+ ..+  ...+++||++|.|+++|.+.+.+.+
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          114 VGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            5799998643     233334 222  3588999999999999999998876

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=97.00  E-value=0.00062  Score=47.87  Aligned_cols=45  Identities=16%  Similarity=0.080  Sum_probs=33.7

Q ss_pred             CcccCCCCCH-------hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-------EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-------e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...       ++...+.   ..+..+++||++|.|+++|.+.+.+.+.
T Consensus       133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  187 (194)
T 3reg_A          133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIF  187 (194)
T ss_dssp             EEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHH
Confidence            5799998642       2333332   3345899999999999999999998764

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=97.00  E-value=0.00048  Score=46.90  Aligned_cols=46  Identities=22%  Similarity=0.166  Sum_probs=33.6

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...     ++...+. .. ...+++||+++.|+++|.+.+.+.+..
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          115 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence            5799998633     2333332 22 257899999999999999999987754

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.99  E-value=0.00052  Score=53.14  Aligned_cols=46  Identities=28%  Similarity=0.450  Sum_probs=35.5

Q ss_pred             CcccCCCC-CHhhH----HHHh----cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQI-SIEEL----DIIY----KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~-~~e~l----~~l~----~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+. +.+.+    +.+.    .+..++++||.+|.|+++|.+.+.+.+..
T Consensus       128 V~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~  182 (308)
T 3iev_A          128 VINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPE  182 (308)
T ss_dssp             EEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCB
T ss_pred             EEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCcc
Confidence            58999998 54432    2331    23579999999999999999999998853

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.99  E-value=0.00033  Score=49.30  Aligned_cols=46  Identities=24%  Similarity=0.193  Sum_probs=32.2

Q ss_pred             CcccCCCCCH---hhHH-HHh-c-C----CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI---EELD-IIY-K-I----PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~---e~l~-~l~-~-~----~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...   +++. .+. . .    ...+++||++|.|+++|.+.+.+.+..
T Consensus       130 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          130 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             EEECCCCccCCCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5799998743   2222 211 1 1    136889999999999999999987753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.98  E-value=0.00036  Score=48.59  Aligned_cols=46  Identities=9%  Similarity=-0.096  Sum_probs=33.0

Q ss_pred             CcccCCCCCHh---hHHHH-h--cC----CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE---ELDII-Y--KI----PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l-~--~~----~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+....   ++... .  ..    ...+++||+++.|+++|.+.+.+.+..
T Consensus       125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          125 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEeCccCCCCCCHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            58999987542   22221 1  01    147889999999999999999988754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.95  E-value=0.0003  Score=49.27  Aligned_cols=46  Identities=11%  Similarity=-0.062  Sum_probs=33.1

Q ss_pred             CcccCCCCCH---hhHH-HHh-----c-C-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI---EELD-IIY-----K-I-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~---e~l~-~l~-----~-~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...   +++. .+.     . . ..++++||+++.|+++|.+.|.+.+..
T Consensus       133 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  189 (199)
T 4bas_A          133 FANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASR  189 (199)
T ss_dssp             EEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHH
Confidence            5799999855   3332 221     1 1 146889999999999999999987753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.94  E-value=0.00058  Score=46.29  Aligned_cols=45  Identities=13%  Similarity=0.110  Sum_probs=32.7

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.     ++...+. . ....+++||+++.|+++|.+.|.+.+.
T Consensus       117 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i~  168 (170)
T 1z0j_A          117 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP  168 (170)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             EEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHh
Confidence            4699998753     2233332 2 235789999999999999999988763

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.94  E-value=0.00031  Score=47.84  Aligned_cols=45  Identities=20%  Similarity=0.181  Sum_probs=32.4

Q ss_pred             CcccCCCCCH---hhHHH-Hh-c-CC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELDI-IY-K-IP----HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~-l~-~-~~----~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...   +++.. +. . ..    ..+++||++|.|+++|.+.+.+.+.
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  168 (171)
T 1upt_A          114 FANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK  168 (171)
T ss_dssp             EEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECCCCcCCCCHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHh
Confidence            5899999854   23322 21 1 11    4788999999999999999988764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.93  E-value=0.00032  Score=49.26  Aligned_cols=46  Identities=9%  Similarity=0.057  Sum_probs=32.5

Q ss_pred             CcccCCCCCH---hhHHHHh---cC----CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI---EELDIIY---KI----PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l~---~~----~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...   +++....   .+    -..+++||++|.|+++|.+.|.+.+..
T Consensus       132 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          132 FANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             EEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEeCcCcccCCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            5899999753   3333221   11    147889999999999999999988754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=96.93  E-value=0.00042  Score=48.46  Aligned_cols=45  Identities=16%  Similarity=0.076  Sum_probs=32.5

Q ss_pred             CcccCCCCCH---hhHHH-Hh--cCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELDI-IY--KIP----HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~-l~--~~~----~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...   +++.. +.  ...    ..+++||+++.|+++|.+.+.+.+.
T Consensus       129 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  183 (189)
T 2x77_A          129 FANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLR  183 (189)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECCCCcCCCCHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHH
Confidence            5899999754   33322 11  111    3788999999999999999988774

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.93  E-value=0.001  Score=46.45  Aligned_cols=46  Identities=13%  Similarity=-0.003  Sum_probs=33.9

Q ss_pred             CcccCCCCCHh-----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE-----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+....     +...+. . .-..+++||+++.|+++|.+.+.+.+..
T Consensus       127 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~  179 (196)
T 3tkl_A          127 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK  179 (196)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            57999987542     233332 2 2258999999999999999999887753

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.91  E-value=0.00046  Score=46.69  Aligned_cols=45  Identities=13%  Similarity=0.059  Sum_probs=32.4

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+ ... -..+++||++|.|+++|.+.|.+.+.
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~~  168 (170)
T 1r2q_A          117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             EEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            4599998643     233333 222 24788999999999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.91  E-value=0.0011  Score=45.40  Aligned_cols=44  Identities=14%  Similarity=-0.003  Sum_probs=32.4

Q ss_pred             CcccCCCCCH------hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI------EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~------e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...      ++...+.   .....+++||++|.|+++|.+.+.+.+
T Consensus       124 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  176 (182)
T 1ky3_A          124 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSA  176 (182)
T ss_dssp             EEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            5799998532      2333442   223589999999999999999998765

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.90  E-value=0.0011  Score=44.33  Aligned_cols=44  Identities=11%  Similarity=0.047  Sum_probs=32.7

Q ss_pred             CcccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...    ++...+. . .-..+++||.++.|+++|.+.+.+.+
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (166)
T 2ce2_X          114 VGNKSDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             EEECTTCSCCCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEEchhhhhcccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            5799998752    2333442 1 12589999999999999999998875

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.90  E-value=0.00077  Score=47.71  Aligned_cols=44  Identities=11%  Similarity=0.111  Sum_probs=31.1

Q ss_pred             CcccCCCCC---HhhHHHHhcC------------C--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS---IEELDIIYKI------------P--HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~---~e~l~~l~~~------------~--~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+..   .+++......            .  ..+++||++|.|+++|.+.+.+.|
T Consensus       130 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~l  190 (190)
T 1m2o_B          130 LGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQYI  190 (190)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEECCCCcCCCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhhC
Confidence            589999874   3344333111            1  378899999999999999887643

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.89  E-value=0.00027  Score=49.32  Aligned_cols=43  Identities=19%  Similarity=0.072  Sum_probs=30.5

Q ss_pred             CcccCCCCCH---hhHHHHh---cCC----CeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI---EELDIIY---KIP----HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l~---~~~----~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+...   +++....   ...    ..+++||++|.|+++|.+.|.+.
T Consensus       128 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          128 FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             EEECCCcccCCCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            5899998753   3333221   111    47889999999999999988764

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=96.88  E-value=0.00068  Score=54.29  Aligned_cols=45  Identities=40%  Similarity=0.476  Sum_probs=34.2

Q ss_pred             CcccCCCCCHhhH----HHHh----c----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEEL----DIIY----K----IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l~----~----~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.++.    +.+.    .    ...++++||.+|.|+++|++.|.+.+.
T Consensus       135 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          135 VQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            5799999876542    2221    1    225899999999999999999998764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.87  E-value=0.00054  Score=48.62  Aligned_cols=45  Identities=16%  Similarity=0.015  Sum_probs=32.0

Q ss_pred             CcccCCCCCH---hhHHHH-h-c-C--C--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELDII-Y-K-I--P--HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l-~-~-~--~--~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...   +++... . . .  .  ..+++||++|.|+++|.+.+.+.+.
T Consensus       136 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          136 FANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             EEECCCCCCCCCHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            5799998754   233221 1 1 1  1  3688999999999999999988763

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.87  E-value=0.00072  Score=47.27  Aligned_cols=45  Identities=22%  Similarity=0.120  Sum_probs=32.8

Q ss_pred             CcccCCCCCH---hhHHH-Hh--cCC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELDI-IY--KIP----HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~-l~--~~~----~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...   +++.. +.  .+.    ..+++||++|.|+++|.+.+.+.+.
T Consensus       123 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (187)
T 1zj6_A          123 FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK  177 (187)
T ss_dssp             EEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             EEECCCCcCCCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            5899998753   33322 21  111    4788999999999999999998874

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=96.85  E-value=0.00093  Score=52.59  Aligned_cols=46  Identities=17%  Similarity=0.095  Sum_probs=35.5

Q ss_pred             CcccCCCCCHhhHHHH----h-cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDII----Y-KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~-~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.....++..    . ...+++++||.+|+|+++|.+.+.+.+..
T Consensus       286 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          286 VINKIDVADEENIKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             EECCTTTCCHHHHHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             EEECcccCChHHHHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            5799999876554322    1 23358999999999999999999998753

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.84  E-value=0.00051  Score=48.21  Aligned_cols=45  Identities=13%  Similarity=0.027  Sum_probs=31.4

Q ss_pred             CcccCCCCCHh---hHHHH-h--cC----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE---ELDII-Y--KI----PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l-~--~~----~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+....   ++... .  ..    -..+++||++|.|+++|.+.+.+.+.
T Consensus       123 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (181)
T 1fzq_A          123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVN  177 (181)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC-
T ss_pred             EEECcCcccCCCHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHH
Confidence            57999987542   23221 1  11    13788999999999999999988764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.84  E-value=0.0011  Score=45.52  Aligned_cols=45  Identities=18%  Similarity=0.070  Sum_probs=33.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. . .-..+++||+++.|+++|.+.+.+.+.
T Consensus       122 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  173 (180)
T 2g6b_A          122 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  173 (180)
T ss_dssp             EEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998743     2333332 1 125899999999999999999998775

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.83  E-value=0.0011  Score=45.79  Aligned_cols=47  Identities=13%  Similarity=0.044  Sum_probs=34.4

Q ss_pred             CcccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+...    +....+. . ....+++||.+|.|+++|.+.+.+.+...
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  167 (189)
T 4dsu_A          115 VGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKH  167 (189)
T ss_dssp             EEECTTSSSCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             EEECccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            5799998743    2333332 1 22589999999999999999999887643

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.83  E-value=0.0009  Score=45.65  Aligned_cols=45  Identities=20%  Similarity=0.149  Sum_probs=32.7

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. .+ ...+++||++|.|+++|.+.|.+.+.
T Consensus       117 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  168 (175)
T 2nzj_A          117 VGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLR  168 (175)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHH
Confidence            5899998753     2222221 11 25889999999999999999988764

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.82  E-value=0.00083  Score=45.60  Aligned_cols=44  Identities=11%  Similarity=0.118  Sum_probs=32.5

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .. ...+++||++|.|+++|.+.+.+.+
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  167 (170)
T 1z08_A          117 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM  167 (170)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHH
Confidence            5799998643     2333332 22 2578999999999999999998876

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.81  E-value=0.0005  Score=47.68  Aligned_cols=45  Identities=22%  Similarity=0.437  Sum_probs=33.6

Q ss_pred             CcccCCCCCH--hhHHHHh---cCC------CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI--EELDIIY---KIP------HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~--e~l~~l~---~~~------~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...  ++.+.+.   ..+      .++++||++|.|+++|.+.+.+.+.
T Consensus       128 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  183 (190)
T 2cxx_A          128 AVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  183 (190)
T ss_dssp             EEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EeehHhccCcHHHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcc
Confidence            5899999854  2344442   222      3689999999999999999988774

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=96.81  E-value=0.0011  Score=47.31  Aligned_cols=24  Identities=13%  Similarity=0.188  Sum_probs=21.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||++|.|+++|.+.+.+.+
T Consensus       174 ~~~~~SA~~g~gv~~l~~~l~~~l  197 (198)
T 1f6b_A          174 EVFMCSVLKRQGYGEGFRWMAQYI  197 (198)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhc
Confidence            378899999999999999988765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.81  E-value=0.0011  Score=46.70  Aligned_cols=45  Identities=4%  Similarity=-0.034  Sum_probs=32.8

Q ss_pred             CcccCCCC-------CHhhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQI-------SIEELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~-------~~e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+.       ..++...+ ..+  ...+.+||++|.|+++|.+.+.+.+-
T Consensus       125 v~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~  179 (184)
T 3ihw_A          125 VGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVV  179 (184)
T ss_dssp             EEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            57999983       23344444 233  35788999999999999999888653

>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}

Probab=96.80  E-value=0.0014  Score=42.02  Aligned_cols=52  Identities=12%  Similarity=0.094  Sum_probs=43.7

Q ss_pred             cEEEeC-CCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          63 PVVLHT-DRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~-g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      ..-++. | +|+.|+|..||..+.+...-|.|       .|+-+.++++|++++.|+|++.
T Consensus        21 ~~~~~~~~-~T~~dia~~i~~~l~~~~vaakv-------Ng~l~dL~~~l~~d~~ve~vt~   73 (88)
T 1wwt_A           21 QVDAESWK-TTPYQIACGISQGLADNTVIAKV-------NNVVWDLDRPLEEDCTLELLKF   73 (88)
T ss_dssp             EEEEETTT-CCHHHHHHHSSTTTGGGCCCEEE-------SSSEECSSSCCCSSEEEEECSS
T ss_pred             EEEcccCC-CCHHHHHHHhhhccccceEEEEE-------CCEEECCCcCcCCCCEEEEEeC
Confidence            455676 6 99999999999999988777765       5677889999999999999863

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=96.80  E-value=0.00064  Score=56.28  Aligned_cols=45  Identities=18%  Similarity=0.130  Sum_probs=35.5

Q ss_pred             CcccCCCCCHhhHH--HHhc--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELD--IIYK--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~--~l~~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+......+  .+..  +.+++++||++|.|+++|.+.|.+.+.
T Consensus       349 V~NK~Dl~~~~~~~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          349 VANKLDRAANADALIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             EEECTTSCTTTHHHHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             EEECcCCCCccchhHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            58999998654432  2422  457899999999999999999999875

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.80  E-value=0.0011  Score=45.55  Aligned_cols=45  Identities=16%  Similarity=0.113  Sum_probs=33.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     +++..+. .. -..+++||++|.|+++|.+.|.+.+.
T Consensus       123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (181)
T 2efe_B          123 AGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLP  174 (181)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC
T ss_pred             EEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799998643     2333332 22 24789999999999999999998774

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.79  E-value=0.00057  Score=46.90  Aligned_cols=46  Identities=20%  Similarity=0.155  Sum_probs=33.4

Q ss_pred             CcccCCCCCH--hhHH-HHhc-------C---CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI--EELD-IIYK-------I---PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~--e~l~-~l~~-------~---~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...  +++. .+..       +   ...+++||++|.|+++|.+.+.+.+..
T Consensus       113 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~  171 (178)
T 2lkc_A          113 AINKMDKPEANPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEM  171 (178)
T ss_dssp             EEETTTSSCSCHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHH
T ss_pred             EEECccCCcCCHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhh
Confidence            5799998853  3332 2211       1   147889999999999999999988765

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=96.79  E-value=0.0012  Score=54.68  Aligned_cols=45  Identities=20%  Similarity=0.215  Sum_probs=33.7

Q ss_pred             CcccCCCCCH---hhHHHHhcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI---EELDIIYKI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l~~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...   +++..+... .+++++||++|.|+++|.+.|.+.+.
T Consensus       356 V~NK~DL~~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~l~~~~~  404 (482)
T 1xzp_A          356 VINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRETQ  404 (482)
T ss_dssp             EEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred             EEECcccccccCHHHHHHHhcCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            5899998743   233333222 36899999999999999999999754

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.77  E-value=0.0012  Score=45.46  Aligned_cols=44  Identities=7%  Similarity=-0.031  Sum_probs=31.8

Q ss_pred             CcccCCCC-------CHhhHHHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQI-------SIEELDII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~-------~~e~l~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.       ..++...+ ..  ....+.+||++|.|+++|.+.+.+.+
T Consensus       114 v~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~  167 (178)
T 2iwr_A          114 VGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKV  167 (178)
T ss_dssp             EEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHH
Confidence            57999983       23344444 22  22578899999999999999888765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.76  E-value=0.00095  Score=52.44  Aligned_cols=45  Identities=13%  Similarity=0.230  Sum_probs=33.8

Q ss_pred             CcccCCCCCHhhHH----HHh------c------CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELD----IIY------K------IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~l~------~------~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.....+.    .+.      .      .+.++++||.+|.|+++|.+.|.+.+.
T Consensus       200 v~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          200 VINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             EECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            58999998653321    221      1      345789999999999999999999775

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.75  E-value=0.00083  Score=45.95  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=33.0

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. . ....+++||++|.|+++|.+.+.+.+.
T Consensus       120 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  171 (181)
T 2fn4_A          120 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR  171 (181)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            5899998653     2233332 2 225788999999999999999988774

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.75  E-value=0.00087  Score=47.23  Aligned_cols=45  Identities=18%  Similarity=0.193  Sum_probs=33.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     +++..+. .. ..++++||+++.|+++|.+.|.+.+.
T Consensus       134 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          134 AGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            5799998642     2334442 22 24788999999999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.74  E-value=0.0015  Score=44.70  Aligned_cols=45  Identities=13%  Similarity=0.063  Sum_probs=32.6

Q ss_pred             CcccCCCCCH-----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+.  .....+++||.+|.|+++|.+.+.+.+.
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (181)
T 3tw8_B          119 VGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVL  170 (181)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799997643     2222331  1236899999999999999999988764

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.74  E-value=0.00068  Score=45.85  Aligned_cols=44  Identities=16%  Similarity=0.121  Sum_probs=32.2

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     +++..+. . .-..+++||.++.|+++|.+.+.+.+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  165 (168)
T 1z2a_A          115 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKH  165 (168)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHH
T ss_pred             EEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHH
Confidence            5799998643     2333332 1 12588999999999999999998765

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.73  E-value=0.0012  Score=45.30  Aligned_cols=45  Identities=11%  Similarity=-0.153  Sum_probs=33.0

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. . .-..+++||++|.|+++|.+.+.+.+.
T Consensus       121 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  172 (178)
T 2hxs_A          121 VGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEIL  172 (178)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998642     3333332 1 124789999999999999999988764

>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4

Probab=96.73  E-value=0.0022  Score=42.71  Aligned_cols=61  Identities=15%  Similarity=0.283  Sum_probs=40.9

Q ss_pred             eEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhc-------ceeEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927          48 RIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEF-------KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV  120 (123)
Q Consensus        48 rvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f-------~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~  120 (123)
                      .+|.-+..+   ...++-++.| +|+.|+...  ..+...|       .--.|+|+       .+..+++|+|||.|+|+
T Consensus        17 v~ya~p~rq---~~~~~~v~~g-~TV~daI~~--~gi~~~~peIdl~~~~V~Vng~-------~v~~d~~L~dGDRVEIy   83 (97)
T 2hj1_A           17 IAYAFPERY---YLKSFQVDEG-ITVQTAITQ--SGILSQFPEIDLSTNKIGIFSR-------PIKLTDVLKEGDRIEIY   83 (97)
T ss_dssp             EEEEETTEE---EEEEEEEETT-CBHHHHHHH--HTHHHHCTTCCTTTSEEEEEEC-------SCCTTCBCCTTCEEEEC
T ss_pred             EEEeCCCCC---EEEEEEcCCC-CcHHHHHHH--cCCCccCCcccccccEEEEcCE-------ECCCCccCCCCCEEEEE
Confidence            446654433   3447788897 999999866  3454555       22344553       34489999999999996


Q ss_pred             e
Q psy2927         121 K  121 (123)
Q Consensus       121 ~  121 (123)
                      .
T Consensus        84 r   84 (97)
T 2hj1_A           84 R   84 (97)
T ss_dssp             C
T ss_pred             e
Confidence            4

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.72  E-value=0.0017  Score=45.49  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=21.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||++|.|+++|.+.+.+.+
T Consensus       168 ~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          168 CYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHH
Confidence            689999999999999999988764

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.72  E-value=0.0016  Score=44.07  Aligned_cols=45  Identities=11%  Similarity=0.101  Sum_probs=32.6

Q ss_pred             CcccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...    ++...+. . .-..+++||++|.|+++|.+.+.+.+.
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~  164 (170)
T 1g16_A          114 VGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQ  164 (170)
T ss_dssp             EEECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECccCCcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799998432    2333332 1 125899999999999999999988764

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=96.70  E-value=0.00068  Score=48.51  Aligned_cols=24  Identities=8%  Similarity=0.145  Sum_probs=21.3

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      .++++||++|.|+++|.+.+.+.+
T Consensus       180 ~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          180 KYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHh
Confidence            488999999999999999998754

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.69  E-value=0.0017  Score=46.42  Aligned_cols=45  Identities=13%  Similarity=0.072  Sum_probs=33.0

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     +++..+. . .-..+++||+++.|+++|.+.|.+.+.
T Consensus       147 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  198 (217)
T 2f7s_A          147 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIM  198 (217)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             EEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899998643     2333332 2 225899999999999999999988764

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.69  E-value=0.0015  Score=44.59  Aligned_cols=44  Identities=16%  Similarity=0.043  Sum_probs=32.1

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     +++..+ ... -..+++||+++.|+++|.+.+.+.+
T Consensus       126 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  176 (179)
T 1z0f_A          126 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  176 (179)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799998643     233333 222 2478999999999999999988765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.69  E-value=0.00082  Score=45.21  Aligned_cols=44  Identities=20%  Similarity=0.110  Sum_probs=32.0

Q ss_pred             CcccCCCCCH-----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.+.     ++...+ .. ....+++||.+|.|+++|.+.+.+.+
T Consensus       115 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (168)
T 1u8z_A          115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHH
Confidence            5899998643     223333 11 12588999999999999999998765

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.69  E-value=0.00098  Score=46.63  Aligned_cols=44  Identities=14%  Similarity=0.153  Sum_probs=32.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .+ -..+++||++|.|+++|.+.|.+.+
T Consensus       133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i  183 (189)
T 2gf9_A          133 VGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVI  183 (189)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            5899998643     2333332 11 2588999999999999999998875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.68  E-value=0.0012  Score=45.48  Aligned_cols=45  Identities=20%  Similarity=0.083  Sum_probs=32.9

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     +++..+. . .-..+++||+++.|+++|.+.|.+.+.
T Consensus       133 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~  184 (195)
T 3bc1_A          133 CGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIM  184 (195)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799998642     2333332 1 125899999999999999999988763

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=96.68  E-value=0.0019  Score=51.48  Aligned_cols=47  Identities=13%  Similarity=0.109  Sum_probs=33.8

Q ss_pred             CcccCCCCCHh----hHH-H----Hhc--C--CCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISIE----ELD-I----IYK--I--PHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~e----~l~-~----l~~--~--~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+++.+    .+. .    +..  +  .+++++||.+|+|+++|.+.+.+.+...
T Consensus       104 V~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~  163 (369)
T 3ec1_A          104 VGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGG  163 (369)
T ss_dssp             EEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTS
T ss_pred             EEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccC
Confidence            58999998542    221 1    111  2  2578999999999999999999877543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.67  E-value=0.002  Score=44.09  Aligned_cols=44  Identities=16%  Similarity=0.002  Sum_probs=32.7

Q ss_pred             CcccCCCCC----HhhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS----IEELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~----~e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+..    .+++..+.   .....+++||++|.|+++|.+.+.+.+
T Consensus       122 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  172 (177)
T 1wms_A          122 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV  172 (177)
T ss_dssp             EEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEECCcccccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            579999863    23344442   223689999999999999999998875

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=96.67  E-value=0.0013  Score=47.09  Aligned_cols=46  Identities=11%  Similarity=-0.016  Sum_probs=32.2

Q ss_pred             CcccCCCCCHhh-----HHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-----LDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-----l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.....     ...+. . ....+++||++|.|+++|.+.+.+.+..
T Consensus       123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  175 (218)
T 4djt_A          123 CANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTG  175 (218)
T ss_dssp             EEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHC
T ss_pred             EEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            589999875422     22332 1 1248899999999999999999988754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.66  E-value=0.0013  Score=44.50  Aligned_cols=46  Identities=15%  Similarity=0.163  Sum_probs=33.2

Q ss_pred             CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+....     +...+. .. ...+++||.+|.|+++|.+.|.+.+..
T Consensus       115 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          115 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             EEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            57999986432     222231 11 247899999999999999999987753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.64  E-value=0.0016  Score=45.18  Aligned_cols=46  Identities=15%  Similarity=-0.056  Sum_probs=33.0

Q ss_pred             CcccCCCCCH----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...    ++...+ ... ...+++||+++.|+++|.+.+.+.+..
T Consensus       127 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (195)
T 1x3s_A          127 VGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ  178 (195)
T ss_dssp             EEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEECCcCcccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            5799998532    233333 222 247889999999999999999987753

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=96.64  E-value=0.00096  Score=55.01  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=36.1

Q ss_pred             CcccCCCCCHhhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+........+.   ...+.+++||++|.|+++|.+.|.+.+..
T Consensus       336 V~NK~Dl~~~~~~~~~~~~~~~~~~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          336 VMNKIDLVEKQLITSLEYPENITQIVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             EEECTTSSCGGGSTTCCCCTTCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             EEECCCCCcchhhHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            58999998765543322   23468999999999999999999998864

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.62  E-value=0.0021  Score=45.51  Aligned_cols=46  Identities=15%  Similarity=0.005  Sum_probs=33.6

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...     ++...+. . .-..+++||.+|.|+++|.+.+.+.+..
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  171 (206)
T 2bcg_Y          119 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKE  171 (206)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5899998753     2333332 2 2258999999999999999999887653

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.60  E-value=0.00074  Score=48.53  Aligned_cols=45  Identities=7%  Similarity=0.079  Sum_probs=32.5

Q ss_pred             CcccCCCCCH-----hhHH-HHhc---CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELD-IIYK---IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~-~l~~---~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.     +++. .+..   ...++++||.+|.|+++|.+.+.+.+.
T Consensus       160 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~  213 (221)
T 2wsm_A          160 VINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILN  213 (221)
T ss_dssp             EEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             EEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence            5899998643     2222 2221   235889999999999999999998774

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=96.59  E-value=0.0011  Score=52.97  Aligned_cols=45  Identities=13%  Similarity=0.116  Sum_probs=32.8

Q ss_pred             CcccCCCCCHh----hHHH----H-h--cCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE----ELDI----I-Y--KIP--HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~----l-~--~~~--~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+++.+    .+..    . .  .++  +++.+||.+|+|+++|.+.+.+.+.
T Consensus       102 V~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          102 VGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             EEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            68999998543    2221    1 1  222  5788999999999999999988764

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.59  E-value=0.0016  Score=44.39  Aligned_cols=45  Identities=16%  Similarity=0.101  Sum_probs=32.7

Q ss_pred             CcccCCCCCHh-----hHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE-----ELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+....     +...+ .. ....+++||+++.|+++|.+.|.+.+.
T Consensus       125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  176 (179)
T 2y8e_A          125 VGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  176 (179)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC
T ss_pred             EEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            58999986432     22222 11 235789999999999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.59  E-value=0.00079  Score=45.25  Aligned_cols=45  Identities=18%  Similarity=0.066  Sum_probs=32.5

Q ss_pred             CcccCCCCCHh-----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE-----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+....     +...+. . .-..+++||++|.|+++|.+.+.+.+.
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          114 VGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             EEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            58999986432     223331 1 125899999999999999999988763

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.59  E-value=0.0014  Score=46.74  Aligned_cols=45  Identities=18%  Similarity=0.157  Sum_probs=33.1

Q ss_pred             CcccCCCCCH-----hhHHHH-h--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDII-Y--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     +++..+ .  .....+++||+++.|+++|.+.|.+.+.
T Consensus       140 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  192 (201)
T 2hup_A          140 IGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELI  192 (201)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998642     334444 2  2225789999999999999999988764

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=96.59  E-value=0.00011  Score=51.53  Aligned_cols=45  Identities=13%  Similarity=0.068  Sum_probs=30.8

Q ss_pred             CcccCCCCCHh-hHHHHhcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE-ELDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e-~l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.... +... ......+++||++|.|+++|.+.|.+.+..
T Consensus       121 v~NK~Dl~~~~~~~~~-~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  166 (172)
T 2gj8_A          121 VRNKADITGETLGMSE-VNGHALIRLSARTGEGVDVLRNHLKQSMGF  166 (172)
T ss_dssp             EEECHHHHCCCCEEEE-ETTEEEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred             EEECccCCcchhhhhh-ccCCceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence            57999975321 1100 011247889999999999999999998754

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=96.58  E-value=0.0015  Score=51.11  Aligned_cols=45  Identities=11%  Similarity=-0.099  Sum_probs=32.5

Q ss_pred             CcccCCCCCHhhHHHH----h-cC-----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDII----Y-KI-----PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~-~~-----~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+......+.+    . ..     ..++++||++|.|+++|.+.|.+.+.
T Consensus       272 V~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~  326 (329)
T 3o47_A          272 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLR  326 (329)
T ss_dssp             EEECTTSTTCCCHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             EEECccCCcccCHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHH
Confidence            5799998754322222    1 11     13788999999999999999998774

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.58  E-value=0.00075  Score=45.60  Aligned_cols=45  Identities=18%  Similarity=0.071  Sum_probs=32.1

Q ss_pred             CcccCCCCCH--------hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI--------EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~--------e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...        ++...+. . .-..+++||+++.|+++|.+.+.+.+.
T Consensus       114 v~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  168 (170)
T 1ek0_A          114 VGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP  168 (170)
T ss_dssp             EEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSC
T ss_pred             EEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            5799998643        1222331 1 125789999999999999999988763

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.58  E-value=0.0024  Score=44.89  Aligned_cols=45  Identities=9%  Similarity=-0.024  Sum_probs=33.0

Q ss_pred             CcccCCCCCH----hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI----EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...    ++...+.   .....+++||++|.|+++|.+.|.+.+.
T Consensus       123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          123 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             EEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECCCCcccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5899998732    2333332   1235899999999999999999988764

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.57  E-value=0.0015  Score=45.11  Aligned_cols=45  Identities=13%  Similarity=0.044  Sum_probs=27.7

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. . .-..+++||+++.|+++|.+.+.+.+.
T Consensus       119 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~  170 (183)
T 2fu5_C          119 LGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIK  170 (183)
T ss_dssp             EEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHH
T ss_pred             EEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998642     3333332 1 124789999999999999999888764

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.56  E-value=0.0018  Score=45.48  Aligned_cols=45  Identities=11%  Similarity=0.063  Sum_probs=32.2

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. . .-..+++||++|.|+++|.+.+.+.+.
T Consensus       134 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  185 (191)
T 3dz8_A          134 VGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAIC  185 (191)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799998533     2233332 1 125789999999999999999888763

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.54  E-value=0.0023  Score=44.58  Aligned_cols=46  Identities=9%  Similarity=0.076  Sum_probs=33.8

Q ss_pred             CcccCCCCC----HhhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQIS----IEELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~----~e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+..    .+++..+. .+ -..+++||.++.|+++|.+.|.+.+..
T Consensus       132 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  183 (190)
T 3con_A          132 VGNKCDLPTRTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQ  183 (190)
T ss_dssp             EEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEECCcCCcccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            579999874    23344442 21 258999999999999999999887643

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.54  E-value=0.0013  Score=46.37  Aligned_cols=44  Identities=16%  Similarity=0.183  Sum_probs=32.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC--CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .+  ...+++||++|.|+++|.+.|.+.+
T Consensus       137 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i  188 (192)
T 2il1_A          137 VGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDI  188 (192)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5899998643     2333442 22  2578899999999999999988765

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.54  E-value=0.0011  Score=45.58  Aligned_cols=24  Identities=8%  Similarity=0.140  Sum_probs=21.7

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||++|.|+++|.+.+.+.+
T Consensus       156 ~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          156 AYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            578999999999999999998765

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.52  E-value=0.0011  Score=45.69  Aligned_cols=46  Identities=13%  Similarity=-0.000  Sum_probs=33.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...     ++...+. .. -..+++||+++.|+++|.+.+.+.+..
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~  169 (181)
T 3t5g_A          117 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEK  169 (181)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHT
T ss_pred             EEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            5799998633     3333342 22 247889999999999999999998754

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.52  E-value=0.0017  Score=45.55  Aligned_cols=46  Identities=20%  Similarity=0.120  Sum_probs=33.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...     +++..+. . ...++++||.+|.|+++|.+.|.+.+..
T Consensus       125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          125 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5899998643     2233331 1 1258899999999999999999887754

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.51  E-value=0.0018  Score=47.81  Aligned_cols=26  Identities=27%  Similarity=0.272  Sum_probs=23.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      ..+++||++++|+++|.+.|.+.+..
T Consensus       232 ~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          232 RVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             CCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cceEEEecCcccHHHHHHHHHHHhcc
Confidence            58999999999999999999988754

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.49  E-value=0.0028  Score=44.23  Aligned_cols=47  Identities=13%  Similarity=0.169  Sum_probs=34.2

Q ss_pred             CcccCCCCCH----hhHHHH-hc-CCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISI----EELDII-YK-IPHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l-~~-~~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+...    ++...+ .. ....+++||.+|.|+++|.+.+.+.+...
T Consensus       120 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (199)
T 2gf0_A          120 VGNKCDETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRR  172 (199)
T ss_dssp             EEECTTCSSCSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSSS
T ss_pred             EEECccCCccccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhhh
Confidence            5899998742    223333 12 12478999999999999999999987654

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.49  E-value=0.0028  Score=43.73  Aligned_cols=44  Identities=16%  Similarity=0.085  Sum_probs=30.7

Q ss_pred             CcccCCCCC----HhhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS----IEELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~----~e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+..    .+++..+ ... -..+++||+++.|+++|.+.|.+.+
T Consensus       153 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  202 (208)
T 3clv_A          153 VANKIDKNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEI  202 (208)
T ss_dssp             EEECTTCC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEECCCcccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHH
Confidence            589999321    1333333 222 2578999999999999999988765

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.48  E-value=0.0018  Score=45.29  Aligned_cols=44  Identities=18%  Similarity=0.077  Sum_probs=31.9

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. . .-..+++||+++.|+++|.+.|.+.+
T Consensus       136 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  186 (193)
T 2oil_A          136 VGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEI  186 (193)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799998643     2233332 2 12478899999999999999988765

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.48  E-value=0.0021  Score=44.15  Aligned_cols=45  Identities=20%  Similarity=0.135  Sum_probs=32.6

Q ss_pred             CcccCCCCCH-----hhHHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     +++..+ ... ..++++||+++.|+++|.+.|.+.+.
T Consensus       129 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (187)
T 2a9k_A          129 VGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIR  180 (187)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            5799998643     223333 222 25789999999999999999988764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.47  E-value=0.00056  Score=53.10  Aligned_cols=46  Identities=13%  Similarity=-0.010  Sum_probs=34.9

Q ss_pred             CcccCCCCCHhh-HHH-Hh---cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-LDI-IY---KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~-l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...+. +.. +.   .+.+.+++||.+|.|+++|.+.+.+.++.
T Consensus       123 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~  173 (301)
T 1wf3_A          123 VGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMPE  173 (301)
T ss_dssp             EEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred             EEECcccCCchHHHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhccc
Confidence            589999986544 322 22   23358999999999999999999998753

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.46  E-value=0.0019  Score=46.42  Aligned_cols=45  Identities=13%  Similarity=-0.011  Sum_probs=32.6

Q ss_pred             CcccCCCCCH-----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+.  ..-..+++||++|.|+++|.+.+.+.+.
T Consensus       137 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~  188 (201)
T 2ew1_A          137 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLI  188 (201)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998643     2333332  1235899999999999999999888764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.45  E-value=0.002  Score=45.16  Aligned_cols=44  Identities=18%  Similarity=0.052  Sum_probs=31.5

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. . .-..+++||+++.|+++|.+.|.+.+
T Consensus       132 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  182 (191)
T 2a5j_A          132 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI  182 (191)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799998642     2333332 1 12478899999999999998887765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.44  E-value=0.0008  Score=46.34  Aligned_cols=25  Identities=8%  Similarity=0.112  Sum_probs=22.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ..+++||++|.|+++|.+.+.+.+.
T Consensus       155 ~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          155 KYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             EEEEecCCCccCHHHHHHHHHHHHh
Confidence            5789999999999999999998774

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.44  E-value=0.0024  Score=51.18  Aligned_cols=45  Identities=24%  Similarity=0.411  Sum_probs=27.4

Q ss_pred             CcccCCCCCHhh----HHH---H-hc----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE----LDI---I-YK----IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~---l-~~----~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.++    .++   + ..    ...++++||.+|.|+++|++.|.+.+.
T Consensus       141 v~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          141 VQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             EEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             EEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            579999985432    222   2 11    225899999999999999999998765

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.43  E-value=0.0022  Score=45.49  Aligned_cols=24  Identities=17%  Similarity=0.005  Sum_probs=21.3

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||++|.|+++|.+.|.+.+
T Consensus       175 ~~~~~SA~~g~gi~~l~~~i~~~~  198 (201)
T 2gco_A          175 GYLECSAKTKEGVREVFEMATRAG  198 (201)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHH
Confidence            478899999999999999988764

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.43  E-value=0.0033  Score=44.74  Aligned_cols=45  Identities=20%  Similarity=0.140  Sum_probs=33.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+. .. -..+.+||+++.|+++|.+.+.+.+.
T Consensus       136 v~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~  187 (195)
T 3cbq_A          136 VGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIR  187 (195)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             EeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence            5799998643     2333342 22 25788999999999999999998774

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.42  E-value=0.00078  Score=46.46  Aligned_cols=44  Identities=20%  Similarity=0.152  Sum_probs=31.8

Q ss_pred             CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+....    +.+.+. . ....+++||++|.|+++|.+.+.+.+
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          114 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             EEEchHhccccChhhHHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            57999975321    233332 1 12589999999999999999998865

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.42  E-value=0.0016  Score=46.88  Aligned_cols=24  Identities=17%  Similarity=0.070  Sum_probs=21.7

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||++|.|+++|.+.+.+.+
T Consensus       184 ~~~~~SA~~g~gi~el~~~l~~~~  207 (214)
T 2j1l_A          184 AYLECSARLHDNVHAVFQEAAEVA  207 (214)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHH
Confidence            578999999999999999998875

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.41  E-value=0.0042  Score=42.80  Aligned_cols=45  Identities=13%  Similarity=0.164  Sum_probs=32.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeec-CCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAH-HKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~-~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. . .-..+++||+ ++.|+++|.+.+.+.+.
T Consensus       129 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~  181 (183)
T 3kkq_A          129 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIR  181 (183)
T ss_dssp             EEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHH
T ss_pred             EEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHh
Confidence            5799998642     3333332 1 2358999999 99999999999988763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.40  E-value=0.0023  Score=45.10  Aligned_cols=45  Identities=13%  Similarity=0.044  Sum_probs=32.1

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. . .-..+++||++|.|+++|.+.|.+.+.
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  170 (203)
T 1zbd_A          119 VGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVIC  170 (203)
T ss_dssp             EEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             EEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5799998753     2233332 1 125889999999999999988887653

>1tke_A Threonyl-tRNA synthetase; ligase; 1.46A {Escherichia coli} SCOP: d.15.10.1 d.67.1.1 PDB: 1tje_A 1tkg_A* 1tky_A*

Probab=96.37  E-value=0.0059  Score=45.44  Aligned_cols=52  Identities=13%  Similarity=0.098  Sum_probs=45.4

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      ..-++.| +|+.|+|..||..+.+...-|.|       .|+-+.+++.|++++.|+|++.
T Consensus        11 ~~~~~~g-~T~~dia~~i~~~l~~~~vaakv-------Ng~l~dL~~~l~~~~~ve~it~   62 (224)
T 1tke_A           11 QRHYDHA-VSPMDVALDIGPGLAKACIAGRV-------NGELVDACDLIENDAQLSIITA   62 (224)
T ss_dssp             EEECSSC-BCHHHHHHHHCHHHHHHCCEEEE-------TTEEEETTCCBCSCEEEEEECT
T ss_pred             EEEecCC-CCHHHHHHHHhhhcccceEEEEE-------CCEEeccceEcCCCCeEEEEec
Confidence            5678887 99999999999999999888876       5677889999999999999864

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=96.36  E-value=0.0013  Score=46.22  Aligned_cols=44  Identities=9%  Similarity=-0.077  Sum_probs=23.0

Q ss_pred             CcccCCCCC-H-----hhHHHH-hcC-CCeEEEeecC-CcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS-I-----EELDII-YKI-PHCVPLSAHH-KWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~-~-----e~l~~l-~~~-~~~v~ISA~~-~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.. .     ++...+ ..+ ...+++||++ +.|+++|.+.|.+.+
T Consensus       138 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~  190 (208)
T 2yc2_C          138 VANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTF  190 (208)
T ss_dssp             EEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHH
T ss_pred             EEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHH
Confidence            589999876 2     333333 222 2578899999 999999999888865

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=96.36  E-value=0.0028  Score=50.68  Aligned_cols=45  Identities=22%  Similarity=0.290  Sum_probs=33.9

Q ss_pred             CcccCCCCCHhh----HHHH----hc----CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE----LDII----YK----IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l----~~----~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.++    .+++    ..    ..+++++||.+|.|+++|++.|.+.++
T Consensus       143 viNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          143 AQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             EEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            589999987543    2222    11    225899999999999999999998765

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.36  E-value=0.0013  Score=52.08  Aligned_cols=46  Identities=20%  Similarity=0.167  Sum_probs=33.8

Q ss_pred             CcccCCCCCHhh----HHHHh------------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE----LDIIY------------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l~------------~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+...    +..+.            ..++++++||.+|.|+++|.+.|.+.+..
T Consensus       218 VlNK~Dl~~~~~~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          218 AVTKSDGDLIVPARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             EECCCSGGGHHHHHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEeeecCCCchhHHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            579999875432    22221            02457899999999999999999998753

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.35  E-value=0.0019  Score=49.68  Aligned_cols=45  Identities=7%  Similarity=0.057  Sum_probs=34.8

Q ss_pred             CcccCCCCCHhhHHHH----hc-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDII----YK-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+++.+..+..    .. ..+++++||.++.|+++|.+.+.+.+.
T Consensus        56 VlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           56 LLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             EEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHH
Confidence            5899999987554332    12 125889999999999999999888775

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.33  E-value=0.0016  Score=47.32  Aligned_cols=48  Identities=13%  Similarity=0.094  Sum_probs=34.2

Q ss_pred             CcccCCCCCHhh--------HHHHh-cC---CCeEEEeecCCcChHHHHHHHHHhhccce
Q psy2927           1 MQKVSDQISIEE--------LDIIY-KI---PHCVPLSAHHKWNFDDLLEKMWEYLKLTR   48 (123)
Q Consensus         1 V~NKiD~~~~e~--------l~~l~-~~---~~~v~ISA~~~~gld~L~e~i~~~L~~ir   48 (123)
                      |+||+|+.....        +..+. ..   ...+++||++|.|+++|.+.|.+.+...+
T Consensus       148 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          148 GFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             EEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             EEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            589999975422        22221 22   35789999999999999999999876543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=96.32  E-value=0.00062  Score=48.27  Aligned_cols=45  Identities=13%  Similarity=0.066  Sum_probs=27.7

Q ss_pred             CcccCCCCCHh-----hHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE-----ELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+....     +...+. .+ -..+++||+++.|+++|.+.|.+.+.
T Consensus       144 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          144 VGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             C-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred             EEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            68999987542     222332 21 25788999999999999999988764

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.32  E-value=0.0012  Score=47.63  Aligned_cols=45  Identities=20%  Similarity=0.148  Sum_probs=32.3

Q ss_pred             CcccCCCCCH-----hhHHHH-hc---CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDII-YK---IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~---~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.     +++... ..   ...++++||.+|.|+++|.+.+.+.+.
T Consensus       170 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          170 VINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             EEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            5799998643     222222 21   235788999999999999999988764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.30  E-value=0.0026  Score=49.12  Aligned_cols=46  Identities=20%  Similarity=0.271  Sum_probs=35.0

Q ss_pred             CcccCCCCC-HhhH----HHHh-cC--CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQIS-IEEL----DIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~-~e~l----~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.. .+.+    +.+. .+  +..+++||+++.|+++|.+.+.+.++.
T Consensus       122 vlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~  175 (301)
T 1ega_A          122 AVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPE  175 (301)
T ss_dssp             EEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred             EEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCc
Confidence            579999986 4433    3332 22  358999999999999999999998764

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.30  E-value=0.0029  Score=45.07  Aligned_cols=24  Identities=17%  Similarity=0.095  Sum_probs=21.7

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||++|.|+++|.+.|.+.+
T Consensus       175 ~~~~~SA~~g~gi~el~~~l~~~i  198 (207)
T 2fv8_A          175 DYLECSAKTKEGVREVFETATRAA  198 (207)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHH
Confidence            478899999999999999998875

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.27  E-value=0.0037  Score=44.37  Aligned_cols=45  Identities=13%  Similarity=-0.093  Sum_probs=32.0

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. .. -..+++||++|.|+++|.+.+.+.+.
T Consensus       136 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  187 (200)
T 2o52_A          136 CGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTIL  187 (200)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998643     2233332 22 24788999999999999999888663

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.25  E-value=0.0039  Score=44.04  Aligned_cols=46  Identities=11%  Similarity=0.079  Sum_probs=32.7

Q ss_pred             CcccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...    ++...+. . .-.++++||.++.|+++|.+.|.+.+..
T Consensus       131 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          131 VGNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             EEECTTCSSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             EEECCCCcccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5899998422    2333332 1 1258999999999999999998887643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.25  E-value=0.0024  Score=44.90  Aligned_cols=24  Identities=13%  Similarity=0.070  Sum_probs=21.5

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+++||++|.|+++|.+.+.+.+
T Consensus       170 ~~~~~Sa~~g~gi~~l~~~l~~~~  193 (201)
T 2q3h_A          170 SYIECSALTQKNLKEVFDAAIVAG  193 (201)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHH
Confidence            578999999999999999988765

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=96.20  E-value=0.0038  Score=46.69  Aligned_cols=44  Identities=14%  Similarity=0.057  Sum_probs=32.8

Q ss_pred             CcccCCCCCHhhH---HHHh-c--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEEL---DIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l---~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+.....+   ..+. .  .-..+.+||+++.|+++|.+.|.+.+
T Consensus       204 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~~l~~~l  253 (255)
T 3c5h_A          204 VLTKCDEGVERYIRDAHTFALSKKNLQVVETSARSNVNVDLAFSTLVQLI  253 (255)
T ss_dssp             EEECGGGBCHHHHHHHHHHHHTSSSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEcccccccHHHHHHHHHHHhcCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5799998765433   2332 2  22578899999999999999998865

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.18  E-value=0.0024  Score=45.20  Aligned_cols=45  Identities=11%  Similarity=-0.057  Sum_probs=31.5

Q ss_pred             CcccCCCCCH-----------hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----------EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----------e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...           ++...+. . ....+++||++|.|+++|.+.+.+.+.
T Consensus       139 v~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          139 VGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             EEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             EEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            5799998521           2222331 1 124788999999999999999988763

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.18  E-value=0.0037  Score=45.80  Aligned_cols=45  Identities=18%  Similarity=0.152  Sum_probs=31.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+. .+ -..+.+||++|.|+++|.+.+.+.+.
T Consensus       151 VgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~  202 (211)
T 2g3y_A          151 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVR  202 (211)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998632     2222221 11 24788999999999999999988764

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.13  E-value=0.0041  Score=42.88  Aligned_cols=45  Identities=11%  Similarity=-0.104  Sum_probs=31.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. .. -..+++||++|.|+++|.+.+.+.+.
T Consensus       121 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  172 (186)
T 2bme_A          121 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKIL  172 (186)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            5799998643     2233332 22 24788999999999999998887653

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.12  E-value=0.0046  Score=48.66  Aligned_cols=27  Identities=22%  Similarity=0.308  Sum_probs=24.3

Q ss_pred             CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927          19 IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        19 ~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      .++++++||.++.|+++|.+.|.+.+.
T Consensus       234 ~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          234 TPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            367899999999999999999999875

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.12  E-value=0.0022  Score=51.83  Aligned_cols=46  Identities=24%  Similarity=0.430  Sum_probs=34.1

Q ss_pred             CcccCCCCCH--hhH-HHHh--cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI--EEL-DIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~--e~l-~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...  .+. ..+.  .+.+.+++||.+|.|+++|++.+.+.+..
T Consensus       116 v~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  166 (439)
T 1mky_A          116 VANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE  166 (439)
T ss_dssp             EEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhccc
Confidence            5899997643  122 2332  34468999999999999999999998853

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0041  Score=44.85  Aligned_cols=46  Identities=20%  Similarity=0.123  Sum_probs=32.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...     ++...+. .. -..+++||+++.|+++|.+.+.+.+..
T Consensus       124 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          124 IGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             EECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5799998643     2333332 22 247889999999999999999887653

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.06  E-value=0.0021  Score=45.48  Aligned_cols=46  Identities=11%  Similarity=-0.008  Sum_probs=33.4

Q ss_pred             CcccCCCCCHh-----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE-----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+....     +...+. . ....+++||++|.|+++|.+.|.+.+..
T Consensus       135 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  187 (201)
T 3oes_A          135 VGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIAR  187 (201)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            57999986432     223331 1 1257889999999999999999988754

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=96.06  E-value=0.0021  Score=45.74  Aligned_cols=45  Identities=7%  Similarity=0.011  Sum_probs=32.9

Q ss_pred             CcccCCCCCH-------------hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-------------EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-------------e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...             ++...+.   .....+++||.+|.|+++|.+.+.+.+.
T Consensus       119 v~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (212)
T 2j0v_A          119 VGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVL  179 (212)
T ss_dssp             EEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHh
Confidence            5799998643             2223332   2235889999999999999999988764

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.02  E-value=0.003  Score=48.89  Aligned_cols=41  Identities=20%  Similarity=0.177  Sum_probs=28.4

Q ss_pred             CcccCCCCCHhh---HHHH----hcC-CCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQISIEE---LDII----YKI-PHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~l----~~~-~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+.++++   .+..    ... ..++++||++|.|+++|.+.+.
T Consensus       116 V~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          116 VFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             EECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             EEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            689999987642   2222    122 2588999999999999766543

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=96.02  E-value=0.0019  Score=52.16  Aligned_cols=45  Identities=22%  Similarity=0.314  Sum_probs=32.0

Q ss_pred             CcccCCCCCHh-hHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE-ELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e-~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...+ +...+.  .+.+.+++||.+|.|+++|++.+.+.++
T Consensus       117 v~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          117 AVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             EEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             EEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence            58999987542 222221  2346899999999999999999999886

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.01  E-value=0.0033  Score=44.24  Aligned_cols=45  Identities=13%  Similarity=0.055  Sum_probs=32.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCc-ChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKW-NFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~-gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+. . .-..+++||+++. |+++|.+.+.+.+.
T Consensus       138 v~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~  190 (196)
T 2atv_A          138 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR  190 (196)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHH
Confidence            5799998643     2333332 2 1257889999999 99999999988763

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.99  E-value=0.0062  Score=44.90  Aligned_cols=45  Identities=18%  Similarity=0.173  Sum_probs=32.2

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...++ .+ -..+.+||++|.|+++|.+.|.+.|.
T Consensus       124 VgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          124 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  175 (216)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred             EeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence            5799997643     3344442 21 23788999999999999999988774

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.92  E-value=0.0018  Score=46.55  Aligned_cols=45  Identities=16%  Similarity=0.056  Sum_probs=32.2

Q ss_pred             CcccCCCCCHhh---HHHH-h-cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE---LDII-Y-KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~l-~-~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.....   ...+ . ..-..+.+||++|.|+++|.+.+.+.+.
T Consensus       125 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~  174 (221)
T 3gj0_A          125 CGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLI  174 (221)
T ss_dssp             EEECTTSSSCSSCGGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHH
T ss_pred             EEECCccccccccHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            579999874322   1111 1 1225789999999999999999988764

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.89  E-value=0.00068  Score=51.58  Aligned_cols=46  Identities=15%  Similarity=0.146  Sum_probs=34.0

Q ss_pred             CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+....    .++.+. . ..+++++||.+|.|+++|.+.|.+.+..
T Consensus       118 v~NK~Dl~~~~~~~~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~~~  169 (274)
T 3i8s_A          118 ALNMLDIAEKQNIRIEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYKAN  169 (274)
T ss_dssp             EEECHHHHHHTTEEECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCCCC
T ss_pred             EEECccchhhhhHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            58999986442    233442 1 1358999999999999999999987753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.89  E-value=0.0064  Score=43.09  Aligned_cols=45  Identities=18%  Similarity=0.170  Sum_probs=31.5

Q ss_pred             CcccCCCCCHh-----hHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE-----ELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+....     +...+. .+. ..+.+||++|.|+++|.+.+.+.+.
T Consensus       120 V~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          120 VGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHH
Confidence            57999986421     112221 222 4788999999999999999988763

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.88  E-value=0.0013  Score=46.57  Aligned_cols=23  Identities=9%  Similarity=0.125  Sum_probs=20.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ..+++||++|.|+++|.+.+.+.
T Consensus       180 ~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          180 KYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            46889999999999999988764

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.87  E-value=0.0038  Score=45.01  Aligned_cols=25  Identities=8%  Similarity=-0.096  Sum_probs=22.2

Q ss_pred             CeEEEeecCCcC-hHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKWN-FDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~g-ld~L~e~i~~~L~   45 (123)
                      ..+.+||++|.| +++|.+.+.+.+.
T Consensus       177 ~~~e~SA~~g~g~v~~lf~~l~~~~~  202 (214)
T 3q3j_B          177 IYLEGSAFTSEKSIHSIFRTASMLCL  202 (214)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCCcccHHHHHHHHHHHHh
Confidence            578899999998 9999999988764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.86  E-value=0.0031  Score=51.21  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=32.1

Q ss_pred             CcccCCCCCHh-----hH-HHHh------cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----EL-DIIY------KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l-~~l~------~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...+     ++ +.+.      ....++++||++|.|+++|.+.+.+.+
T Consensus       312 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~  367 (456)
T 4dcu_A          312 VVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKAS  367 (456)
T ss_dssp             EEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHH
T ss_pred             EEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHHHHHHHHHHHH
Confidence            58999998532     21 1221      134689999999999999999888766

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=95.85  E-value=0.0022  Score=51.12  Aligned_cols=47  Identities=21%  Similarity=0.362  Sum_probs=33.9

Q ss_pred             CcccCCCCCHh--h-HHH---H-hcC----CCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISIE--E-LDI---I-YKI----PHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~e--~-l~~---l-~~~----~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+++..  . ++.   + ..+    +..+++||+++.|+++|.+.|.+.+..-
T Consensus       298 V~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          298 TLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             EEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            58999998632  1 111   1 111    2578999999999999999999987653

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=95.83  E-value=0.004  Score=47.99  Aligned_cols=41  Identities=15%  Similarity=0.064  Sum_probs=29.2

Q ss_pred             CcccCCCCCHhh---HHHH-hcC---CCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQISIEE---LDII-YKI---PHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~l-~~~---~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+.+...   ...+ ..+   ..++++||++|.|+++|.+.+.
T Consensus       121 v~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          121 VINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             EECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             EEeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            589999986543   2222 111   3588999999999999877654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=95.80  E-value=0.0062  Score=49.48  Aligned_cols=18  Identities=22%  Similarity=0.311  Sum_probs=15.9

Q ss_pred             CeEEEeecCCcChHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLE   38 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e   38 (123)
                      .++++||.+|.|+++|.+
T Consensus       200 ~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          200 HFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             eEEEeeccCCcccccccc
Confidence            489999999999999765

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=95.78  E-value=0.0079  Score=51.18  Aligned_cols=46  Identities=22%  Similarity=0.177  Sum_probs=34.3

Q ss_pred             CcccCCCCCH--hh-HHHHh---cC--CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI--EE-LDIIY---KI--PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~--e~-l~~l~---~~--~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...  ++ .+.+.   ..  .+++++||++|.|+++|++.|.+.++.
T Consensus       129 ViNKiDl~~a~~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          129 VLNKIDLPAADPERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             EEECTTSTTCCHHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             eeeccCcccccHHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            5899999752  22 23332   22  258999999999999999999998753

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.76  E-value=0.0059  Score=49.32  Aligned_cols=45  Identities=22%  Similarity=0.333  Sum_probs=32.5

Q ss_pred             CcccCCCCCHhh--HH----HH----h--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE--LD----II----Y--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~--l~----~l----~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...+.  .+    .+    .  .+.+.+++||++|.|+++|.+.+.+.+.
T Consensus       298 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~  354 (439)
T 1mky_A          298 VFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  354 (439)
T ss_dssp             EEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            579999885432  11    11    1  2346899999999999999999887664

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.75  E-value=0.0043  Score=43.55  Aligned_cols=44  Identities=9%  Similarity=-0.090  Sum_probs=31.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEee-cCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSA-HHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA-~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. . .-..+.+|| .++.|+++|.+.+.+.+
T Consensus       133 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i  184 (187)
T 3c5c_A          133 LGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREA  184 (187)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHH
T ss_pred             EEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHH
Confidence            5799998532     3333332 1 124788999 89999999999998765

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.72  E-value=0.0026  Score=44.07  Aligned_cols=46  Identities=22%  Similarity=0.140  Sum_probs=33.7

Q ss_pred             CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+....    +.+.+. . ....+++||+++.|+++|.+.+.+.+..
T Consensus       118 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          118 ALNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred             EEEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence            57999976432    233342 1 1358999999999999999999998753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.62  E-value=0.0019  Score=48.83  Aligned_cols=43  Identities=12%  Similarity=0.154  Sum_probs=32.0

Q ss_pred             CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+....    ..+.+. . ..+++++||.+|.|+++|.+.+.+.
T Consensus       116 v~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          116 ALNMMDIAEHRGISIDTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             EEECHHHHHHTTCEECHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             EEEChhcCCcCCcHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            58999986442    233442 1 1358999999999999999999875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.62  E-value=0.0031  Score=48.25  Aligned_cols=45  Identities=16%  Similarity=0.093  Sum_probs=32.4

Q ss_pred             CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+....    +.+.+. . .-+++++||.+|.|+++|.+.+.+.+.
T Consensus       113 v~NK~Dl~~~~~~~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          113 ALNMIDVLDGQGKKINVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             EEECHHHHHHTTCCCCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSCT
T ss_pred             EEEChhhCCcCCcHHHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHHh
Confidence            57999976331    233342 1 125899999999999999999988653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=95.60  E-value=0.0074  Score=51.44  Aligned_cols=46  Identities=15%  Similarity=0.141  Sum_probs=34.2

Q ss_pred             CcccCCCCCH--hh-HHHHh-c--CC--CeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI--EE-LDIIY-K--IP--HCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~--e~-l~~l~-~--~~--~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...  ++ .+.+. .  .+  +++++||++|.|+++|++.|.+.++.
T Consensus       131 viNKiDl~~a~~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          131 VINKIDLPSADVDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             EEECTTSTTCCHHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             EEeccCccccCHHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            5899998743  22 33342 2  22  48999999999999999999998863

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=95.55  E-value=0.0095  Score=41.45  Aligned_cols=44  Identities=11%  Similarity=-0.012  Sum_probs=29.6

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCC---cChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHK---WNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~---~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+. .. -..+++||+++   .|++++.+.+.+.+
T Consensus       133 v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i  186 (189)
T 1z06_A          133 VGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKL  186 (189)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC---
T ss_pred             EEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHH
Confidence            5799998643     2333442 22 25899999999   99999998887655

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=95.53  E-value=0.0027  Score=51.86  Aligned_cols=46  Identities=20%  Similarity=0.184  Sum_probs=34.9

Q ss_pred             CcccCCCCCHhh---HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE---LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...+.   .+.+. .+ ..++++||++|.|+++|.+.|.+.+..
T Consensus       146 V~NK~Dl~~~~~~~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          146 VVNKIDVLGEKAEELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             ECCCCTTTTCCCTHHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             EEeCcCCCCccHHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            689999885543   23332 22 257899999999999999999999854

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=95.50  E-value=0.0061  Score=45.99  Aligned_cols=24  Identities=8%  Similarity=0.145  Sum_probs=21.7

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      .++++||++|.|+++|.+.+.+.+
T Consensus       305 ~~~~~Sa~~~~gi~~l~~~l~~~~  328 (332)
T 2wkq_A          305 KYLECSALTQRGLKTVFDEAIRAV  328 (332)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHH
Confidence            578999999999999999998865

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.46  E-value=0.0029  Score=48.18  Aligned_cols=43  Identities=9%  Similarity=-0.091  Sum_probs=31.8

Q ss_pred             CcccCCCCCHhhHHH----HhcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELDI----IYKI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l~~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+++.+..+.    +... -.+ ++||.++.|+++|.+.+.+.+
T Consensus        52 vlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~   99 (262)
T 3cnl_A           52 LLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRL   99 (262)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTT
T ss_pred             EEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhh
Confidence            689999998755433    2221 135 999999999999998887664

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.46  E-value=0.0087  Score=41.75  Aligned_cols=46  Identities=11%  Similarity=0.023  Sum_probs=32.7

Q ss_pred             CcccCCCCCHhhH--------HHHh-c--CC---CeEEEeecCCc-ChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEEL--------DIIY-K--IP---HCVPLSAHHKW-NFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l--------~~l~-~--~~---~~v~ISA~~~~-gld~L~e~i~~~L~~   46 (123)
                      |.||+|+.....+        +.+. .  .+   ..+.+||+++. |+++|.+.|.+.+..
T Consensus       118 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          118 VGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             EEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             EEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            4699998865432        1221 1  22   27889999996 999999999987753

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.39  E-value=0.0065  Score=42.22  Aligned_cols=25  Identities=12%  Similarity=-0.012  Sum_probs=21.0

Q ss_pred             CCeEEEeec-CCcChHHHHHHHHHhh
Q psy2927          20 PHCVPLSAH-HKWNFDDLLEKMWEYL   44 (123)
Q Consensus        20 ~~~v~ISA~-~~~gld~L~e~i~~~L   44 (123)
                      ...+.+||+ ++.|+++|.+.+.+.+
T Consensus       156 ~~~~e~Sa~~~~~gi~~l~~~i~~~~  181 (184)
T 1m7b_A          156 ATYIECSALQSENSVRDIFHVATLAC  181 (184)
T ss_dssp             SEEEECBTTTBHHHHHHHHHHHHHHH
T ss_pred             cEEEEeeecCCCcCHHHHHHHHHHHH
Confidence            358899998 6899999999888754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.32  E-value=0.0081  Score=45.29  Aligned_cols=45  Identities=18%  Similarity=0.082  Sum_probs=32.9

Q ss_pred             CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+....    +...+. . --+++++||.+|.|+++|.+.+.+.+.
T Consensus       116 v~NK~Dl~~~~~i~~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          116 AMTAIDEAKKTGMKIDRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             EEECHHHHHHTTCCBCHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcCCCCccchHHHHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            57999976432    233342 1 125899999999999999999988764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=95.24  E-value=0.0065  Score=49.01  Aligned_cols=45  Identities=16%  Similarity=0.139  Sum_probs=32.2

Q ss_pred             CcccCCCCCHhh-----H-HHH-h-----cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE-----L-DII-Y-----KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~-----l-~~l-~-----~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.+.+.     + +.+ .     ...+.+++||++|.|+++|.+.+.+.+.
T Consensus       292 v~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~  348 (436)
T 2hjg_A          292 VVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIHTLMPAIIKASE  348 (436)
T ss_dssp             EEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred             EEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHHHHHHHHHHHHH
Confidence            589999985322     1 122 1     1336899999999999999888877664

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=95.19  E-value=0.0044  Score=52.69  Aligned_cols=37  Identities=14%  Similarity=0.068  Sum_probs=24.7

Q ss_pred             CcccCCCCC--Hhh-------HHHH-h--cC----CCeEEEeecCCcChHHHH
Q psy2927           1 MQKVSDQIS--IEE-------LDII-Y--KI----PHCVPLSAHHKWNFDDLL   37 (123)
Q Consensus         1 V~NKiD~~~--~e~-------l~~l-~--~~----~~~v~ISA~~~~gld~L~   37 (123)
                      |+||+|+..  .+.       +..+ .  .+    ..++++||.+|.|+++|.
T Consensus       311 VvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          311 AMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             EEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             EEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            589999986  211       2111 1  11    257999999999998763

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=95.17  E-value=0.0081  Score=50.56  Aligned_cols=47  Identities=17%  Similarity=0.068  Sum_probs=33.2

Q ss_pred             CcccCCCCCHh--h----HHHHh----cCC---CeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISIE--E----LDIIY----KIP---HCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~e--~----l~~l~----~~~---~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+....  .    +....    .+.   .++++||++|.|+++|++.+...+...
T Consensus       110 ViNKiDl~~~~~~~v~~~l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~~~~  169 (537)
T 3izy_P          110 AINKCDKAEADPEKVKKELLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALAEML  169 (537)
T ss_dssp             CCBSGGGTTTSCCSSSSHHHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHHTTC
T ss_pred             EEecccccccchHHHHHHHHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhhhcc
Confidence            68999987431  1    22111    111   478899999999999999999987643

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=95.10  E-value=0.013  Score=46.63  Aligned_cols=45  Identities=11%  Similarity=0.133  Sum_probs=32.5

Q ss_pred             Ccc-cCCCCCHhhHH----HHh----cC----CCeEE--EeecC---CcChHHHHHHHHHhhcc
Q psy2927           1 MQK-VSDQISIEELD----IIY----KI----PHCVP--LSAHH---KWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~N-KiD~~~~e~l~----~l~----~~----~~~v~--ISA~~---~~gld~L~e~i~~~L~~   46 (123)
                      |+| |+|+ +.+.++    ++.    ..    .++++  +||.+   +.|+++|++.|.+.++.
T Consensus       118 vvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          118 ALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             EECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             EEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            467 9999 654322    221    11    25899  99999   99999999999887764

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.06  E-value=0.0055  Score=46.18  Aligned_cols=46  Identities=17%  Similarity=0.172  Sum_probs=24.2

Q ss_pred             CcccCCCCCHhhHHH----H----hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDI----I----YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l----~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|++..+++..    +    ... -.++++||.+++|+++|.+.|.+.++.
T Consensus       150 V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p~  204 (274)
T 3t5d_A          150 LIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLPL  204 (274)
T ss_dssp             EESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCSE
T ss_pred             EEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCCc
Confidence            689999987765432    2    111 247779999999999999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.01  E-value=0.0085  Score=42.55  Aligned_cols=22  Identities=18%  Similarity=0.086  Sum_probs=17.6

Q ss_pred             eEEEeecCC------cChHHHHHHHHHh
Q psy2927          22 CVPLSAHHK------WNFDDLLEKMWEY   43 (123)
Q Consensus        22 ~v~ISA~~~------~gld~L~e~i~~~   43 (123)
                      .+.+||++|      .|+++|.+.|.+.
T Consensus       186 ~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          186 FLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             EEECBCC-------CCBCHHHHHHHHHH
T ss_pred             EEEeeccCCCccccccChHHHHHHHHHh
Confidence            677999999      9999999988765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=95.01  E-value=0.0044  Score=46.57  Aligned_cols=74  Identities=11%  Similarity=0.122  Sum_probs=45.9

Q ss_pred             CcccCCCCCHh----hHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhccceEEeCCCCCCCCCcccEEEeCCCCCHH
Q psy2927           1 MQKVSDQISIE----ELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYTKPKGQLPDYQSPVVLHTDRRSIE   74 (123)
Q Consensus         1 V~NKiD~~~~e----~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~irvytk~~g~~pd~~~~~~l~~g~~tv~   74 (123)
                      |+||+|+....    +...+. . ..+++++||.+|.|+++|.+.+.+.+...       ..    ..++..+.+ ..++
T Consensus       115 v~NK~Dl~~~~~~~~~~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~~-------~~----~~~~~~~~~-~~~e  182 (271)
T 3k53_A          115 VLNKFDLLKKKGAKIDIKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEGK-------VT----TNPIIPRYD-EDIE  182 (271)
T ss_dssp             EEECHHHHHHHTCCCCHHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHTC-------CC----CCCCCCCCC-HHHH
T ss_pred             EEEChhcCcccccHHHHHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhcc-------cc----CCCCCcCCC-HHHH
Confidence            57999976432    233332 1 12589999999999999999999887421       10    112233343 4566


Q ss_pred             HHHHHhHHHHHh
Q psy2927          75 DFCNKLHRTIAK   86 (123)
Q Consensus        75 d~a~~IH~d~~~   86 (123)
                      +++..|-..+.+
T Consensus       183 ~~~~~l~~~~~~  194 (271)
T 3k53_A          183 REIKHISELLRG  194 (271)
T ss_dssp             HHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhh
Confidence            777666555543

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.99  E-value=0.0062  Score=43.76  Aligned_cols=24  Identities=13%  Similarity=-0.017  Sum_probs=20.5

Q ss_pred             CeEEEeec-CCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAH-HKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~-~~~gld~L~e~i~~~L   44 (123)
                      ..+++||+ ++.|+++|.+.+.+.+
T Consensus       178 ~~~e~SAk~~~~gv~~lf~~l~~~~  202 (205)
T 1gwn_A          178 TYIECSALQSENSVRDIFHVATLAC  202 (205)
T ss_dssp             EEEECCTTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEeeeccCCcCHHHHHHHHHHHH
Confidence            57899999 6899999999887753

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=94.85  E-value=0.0082  Score=48.69  Aligned_cols=46  Identities=20%  Similarity=0.223  Sum_probs=29.9

Q ss_pred             CcccCCCCCHhh-HHHH--hcCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-LDII--YKIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l--~~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+..... ....  ..+...+++||.+|.|+++|.+.+.+.+..
T Consensus       137 V~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~  185 (456)
T 4dcu_A          137 AVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKN  185 (456)
T ss_dssp             EEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGG
T ss_pred             EEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhccc
Confidence            579999874432 2222  134467899999999999999999988764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=94.72  E-value=0.015  Score=48.09  Aligned_cols=46  Identities=7%  Similarity=-0.016  Sum_probs=29.0

Q ss_pred             CcccCCCCCHhh-----HHHH-hcC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-----LDII-YKI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-----l~~l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.....     +... ... ..++++||++|.|+++|.+.+.+.+..
T Consensus       156 V~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          156 VMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             EECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             EEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            689999875322     2322 121 248999999999999999999998754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.68  E-value=0.023  Score=45.50  Aligned_cols=39  Identities=18%  Similarity=0.136  Sum_probs=28.1

Q ss_pred             CcccCCCCCHhh---HHHH----hcC-CCeEEEeecCCcChHHHHHH
Q psy2927           1 MQKVSDQISIEE---LDII----YKI-PHCVPLSAHHKWNFDDLLEK   39 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~l----~~~-~~~v~ISA~~~~gld~L~e~   39 (123)
                      |+||+|+++++.   ++.+    ... -.++++||.++.|+++|...
T Consensus       166 vlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          166 VLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             EEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred             EEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence            689999997754   2222    121 14899999999999987764

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=94.53  E-value=0.013  Score=46.78  Aligned_cols=45  Identities=20%  Similarity=0.172  Sum_probs=31.9

Q ss_pred             CcccCCCCC-HhhH-------HHH-h--cC----CCeEEEeecCCcC------------------hHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS-IEEL-------DII-Y--KI----PHCVPLSAHHKWN------------------FDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~-~e~l-------~~l-~--~~----~~~v~ISA~~~~g------------------ld~L~e~i~~~L~   45 (123)
                      |+||+|+.. .+.+       ..+ .  .+    .+++++||++|.|                  +++|++.+.+.++
T Consensus       134 viNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp  211 (405)
T 2c78_A          134 FMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP  211 (405)
T ss_dssp             EEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred             EEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence            589999984 3322       122 1  12    3589999999987                  8889999988775

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=94.47  E-value=0.004  Score=46.71  Aligned_cols=45  Identities=13%  Similarity=-0.018  Sum_probs=31.7

Q ss_pred             CcccCCCCCHhh--HHHHhc--------CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE--LDIIYK--------IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~--l~~l~~--------~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.....  .+.+..        +..++++||++|.|+++|.+.+.+..+
T Consensus       198 V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~  252 (299)
T 2aka_B          198 VITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK  252 (299)
T ss_dssp             EEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHH
T ss_pred             EEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHH
Confidence            689999985432  222221        113577999999999999999888543

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=94.44  E-value=0.0064  Score=49.82  Aligned_cols=15  Identities=20%  Similarity=0.206  Sum_probs=13.2

Q ss_pred             CeEEEeecCCcChHH
Q psy2927          21 HCVPLSAHHKWNFDD   35 (123)
Q Consensus        21 ~~v~ISA~~~~gld~   35 (123)
                      .++++||.+|.|+++
T Consensus       213 ~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          213 NWVPISGFSGEGVYK  227 (483)
T ss_dssp             EEEECCSSSCTTSSS
T ss_pred             eEEEEeeecCCCccc
Confidence            479999999999975

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=94.40  E-value=0.019  Score=48.67  Aligned_cols=25  Identities=20%  Similarity=0.270  Sum_probs=22.4

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      +++++||.+|.|+++|++.|.+.++
T Consensus       193 pvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          193 SIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEeccCCCCchhHHHHHHhhcc
Confidence            4789999999999999999988765

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=94.25  E-value=0.019  Score=45.80  Aligned_cols=45  Identities=16%  Similarity=0.144  Sum_probs=31.6

Q ss_pred             CcccCCCCC-Hhh-------HHHH-h--cC----CCeEEEeecCCcC----------hHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS-IEE-------LDII-Y--KI----PHCVPLSAHHKWN----------FDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~-~e~-------l~~l-~--~~----~~~v~ISA~~~~g----------ld~L~e~i~~~L~   45 (123)
                      |+||+|+.+ .+.       +..+ .  .+    .+++++||++|.|          +++|++.+.+.++
T Consensus       125 viNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p  194 (397)
T 1d2e_A          125 YVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (397)
T ss_dssp             EEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             EEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCC
Confidence            589999984 322       2222 1  22    2589999999875          8899999988775

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.23  E-value=0.025  Score=39.74  Aligned_cols=23  Identities=13%  Similarity=0.002  Sum_probs=19.9

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+.+||++ .|++++.+.+.+.|
T Consensus       173 ~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          173 SFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             EEEEECTTS-THHHHHHHHHHHHT
T ss_pred             ceEEEEech-hhHHHHHHHHHHHh
Confidence            468899999 99999999988754

>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*

Probab=94.19  E-value=0.04  Score=33.92  Aligned_cols=52  Identities=19%  Similarity=0.335  Sum_probs=34.5

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHH--hhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIA--KEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~--~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      .+-++.+ +|+.|+...+.....  +...++ |     -..++.+..++.|+|||.|.|+.
T Consensus        19 ~~~~~~~-~tv~~ll~~l~~~~p~~~~v~~~-v-----~vNg~~v~~~~~L~~gD~V~i~p   72 (77)
T 2q5w_D           19 DIVLEQA-LTVQQFEDLLFERYPQINNKKFQ-V-----AVNEEFVQKSDFIQPNDTVALIP   72 (77)
T ss_dssp             ECCCSSC-EEHHHHHHHHHHHCGGGTTCCCE-E-----EETTEEECTTSEECTTCEEEEEC
T ss_pred             EEECCCC-CCHHHHHHHHHHHCcchhcceEE-E-----EECCEECCCCCCcCCCCEEEEEC
Confidence            4445676 899999877654421  222112 1     12567788899999999999975

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=94.02  E-value=0.016  Score=49.06  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=20.9

Q ss_pred             CeEEEeecCCcChH--------------HHHHHHHHhhc
Q psy2927          21 HCVPLSAHHKWNFD--------------DLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~~~~gld--------------~L~e~i~~~L~   45 (123)
                      .++++||.+|.|++              .|++.|.+.++
T Consensus       358 ~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p  396 (592)
T 3mca_A          358 HFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP  396 (592)
T ss_dssp             EEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC
T ss_pred             EEEEEecccCcccccccccccccccchHHHHHHHHhhcc
Confidence            47999999999998              78888877654

>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1

Probab=93.80  E-value=0.11  Score=33.69  Aligned_cols=54  Identities=17%  Similarity=0.241  Sum_probs=35.1

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHH---Hhhc--------ceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTI---AKEF--------KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~---~~~f--------~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +.+-++.+ +|+.|+...+-...   .+.+        ....|     -..++.+..++.|+|||.|.|+.
T Consensus        29 ~~~e~~~~-~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v-----~VNg~~v~~~~~L~dGDeV~i~p   93 (98)
T 1vjk_A           29 EEIELPEG-ARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNI-----AVNGRYVSWDEELKDGDVVGVFP   93 (98)
T ss_dssp             EEEEECTT-CBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEE-----EETTBCCCTTCBCCTTCEEEEES
T ss_pred             EEEECCCC-CCHHHHHHHHHhHChhHHHHhhccccccCCcEEE-----EECCEECCCCCCCCCCCEEEEEC
Confidence            35667786 89999987765432   2211        11111     12456677899999999999975

>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A

Probab=93.56  E-value=0.14  Score=32.36  Aligned_cols=54  Identities=13%  Similarity=0.123  Sum_probs=34.4

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHH---HHhh-cc-------eeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRT---IAKE-FK-------YALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d---~~~~-f~-------~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ..+-++.+ +|+.|+...+-..   +.+. |.       +..|     -..++.+..++.|+|||.|.|+.
T Consensus        20 ~~~~~~~~-~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v-----~VN~~~v~~~~~l~~gDeV~i~P   84 (89)
T 3po0_A           20 VRVDVDGD-ATVGDALDALVGAHPALESRVFGDDGELYDHINV-----LRNGEAAALGEATAAGDELALFP   84 (89)
T ss_dssp             EEEECCTT-CBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEE-----EETTEECCTTSBCCTTCEEEEEC
T ss_pred             EEEECCCC-CcHHHHHHHHHHHCcHHHHHHhccCCcccccEEE-----EECCEECCCCcccCCCCEEEEEC
Confidence            35666776 8999998776443   2221 10       0111     12556677899999999999974

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=93.41  E-value=0.038  Score=46.18  Aligned_cols=25  Identities=16%  Similarity=0.080  Sum_probs=22.5

Q ss_pred             eEEEeecCCcChHHHHHHHHHhhcc
Q psy2927          22 CVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus        22 ~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      ++++||.++.|+++|++.+.+.++.
T Consensus       253 V~~gSA~~~~GV~~Lld~i~~~~p~  277 (528)
T 3tr5_A          253 IFFGSAINNFGVGELLDAFVKEAPP  277 (528)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             EEeccccCCccHHHHHHHHHHhCCC
Confidence            5678999999999999999999864

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=92.78  E-value=0.031  Score=45.05  Aligned_cols=35  Identities=20%  Similarity=-0.010  Sum_probs=23.5

Q ss_pred             CcccCCCCC--HhhH-------HHH-hcC------CCeEEEeecCCcChHH
Q psy2927           1 MQKVSDQIS--IEEL-------DII-YKI------PHCVPLSAHHKWNFDD   35 (123)
Q Consensus         1 V~NKiD~~~--~e~l-------~~l-~~~------~~~v~ISA~~~~gld~   35 (123)
                      |+||+|+.+  ++.+       ..+ ..+      ..++++||++|.|+++
T Consensus       163 viNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~  213 (434)
T 1zun_B          163 AINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  213 (434)
T ss_dssp             EEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             EEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccc
Confidence            589999985  2222       122 122      1478899999999987

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=92.67  E-value=0.088  Score=36.93  Aligned_cols=45  Identities=16%  Similarity=0.296  Sum_probs=32.6

Q ss_pred             CcccCCCCCHhh----HHHH----hcCC---CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE----LDII----YKIP---HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l----~~~~---~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+++..+    ++.+    ....   ..+|+||+++.|+++|.+.|.+.+.
T Consensus       143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            479999987542    1221    1221   3578999999999999999998764

>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A

Probab=92.66  E-value=0.28  Score=30.78  Aligned_cols=55  Identities=15%  Similarity=0.210  Sum_probs=33.8

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHH---Hh----------hcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTI---AK----------EFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~---~~----------~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      ...++.+ +|+.++...+....   .+          ......|=|   ++-...-+.++.|+|||.|.|+.
T Consensus        18 ~~~~~~~-~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~---~~v~~~~~~~~~l~~gD~V~i~p   85 (90)
T 2g1e_A           18 EETFNGI-SKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNG---NNITSMKGLDTEIKDDDKIDLFP   85 (90)
T ss_dssp             EEEESSC-CBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESS---SBGGGTCSSSCBCCTTCEEEEEC
T ss_pred             EEEcCCC-CcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECC---EEccccCCCCcCCCCCCEEEEeC
Confidence            3456665 89999987776542   21          122223322   22222236899999999999975

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=92.42  E-value=0.0078  Score=47.23  Aligned_cols=35  Identities=11%  Similarity=-0.013  Sum_probs=24.1

Q ss_pred             CcccCCCCCHhh----HHHH-h---c-CCCeEEEeecCCcChHH
Q psy2927           1 MQKVSDQISIEE----LDII-Y---K-IPHCVPLSAHHKWNFDD   35 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l-~---~-~~~~v~ISA~~~~gld~   35 (123)
                      |+||+|++++++    ++.+ .   . --+++++||.++.|+++
T Consensus       123 vlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~  166 (307)
T 1t9h_A          123 CITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLAD  166 (307)
T ss_dssp             EEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTT
T ss_pred             EEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHH
Confidence            689999986533    3333 1   1 12589999999988764

>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E

Probab=92.22  E-value=0.087  Score=31.66  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=30.5

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeC----CCceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVG----KEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg----~~~~l~d~Dvv~i~~~  122 (123)
                      ++-+ .+ +|+.|+...+.-. .+.+..|        ..++-+-    .++.|+|||.|+|+.-
T Consensus         8 ~~~~-~~-~tv~~ll~~l~~~-~~~v~va--------vN~~~v~~~~~~~~~L~dgD~v~i~~~   60 (64)
T 2cu3_A            8 PRPL-EG-KTLKEVLEEMGVE-LKGVAVL--------LNEEAFLGLEVPDRPLRDGDVVEVVAL   60 (64)
T ss_dssp             EECC-TT-CCHHHHHHHHTBC-GGGEEEE--------ETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred             EEEc-CC-CcHHHHHHHcCCC-CCcEEEE--------ECCEECCccccCCcCCCCCCEEEEEee
Confidence            4455 65 8999998766422 1122222        1444444    4599999999999863

>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2

Probab=92.18  E-value=0.22  Score=30.39  Aligned_cols=50  Identities=20%  Similarity=0.268  Sum_probs=34.5

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      .+-++.+ +|+.|+...+.-. .+.  .|.      -..++-+-++..|+|||.|.|+.-
T Consensus        17 ~~~~~~~-~tv~~Ll~~l~~~-~~~--v~v------avN~~~v~~~~~L~~gD~V~ii~~   66 (70)
T 1ryj_A           17 ILESGAP-RRIKDVLGELEIP-IET--VVV------KKNGQIVIDEEEIFDGDIIEVIRV   66 (70)
T ss_dssp             EEEESSC-CBHHHHHHHTTCC-TTT--EEE------EETTEECCTTSBCCTTCEEEEEEC
T ss_pred             eEECCCC-CcHHHHHHHhCCC-CCC--EEE------EECCEECCCcccCCCCCEEEEEec
Confidence            4778887 9999998776321 111  222      125666778889999999999863

>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A

Probab=91.93  E-value=0.029  Score=35.15  Aligned_cols=50  Identities=12%  Similarity=0.149  Sum_probs=33.9

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +++-++.+ +|+.|+...+.-+. +....        -..++-+..++.|+|||.|.|+.
T Consensus        23 ~~~~~~~~-~Tv~dLl~~L~~~~-~~v~V--------avNg~~v~~~~~L~dGD~V~i~p   72 (77)
T 1rws_A           23 KEIEWREG-MKVRDILRAVGFNT-ESAIA--------KVNGKVVLEDDEVKDGDFVEVIP   72 (77)
T ss_dssp             CCCCCCSS-CCHHHHHHTTTCSS-CSSCE--------EETTEEECSSSCCCSSCCCBCSC
T ss_pred             EEEECCCC-CcHHHHHHHhCCCC-cCEEE--------EECCEECCCCCCcCCCCEEEEEc
Confidence            35566776 99999987664221 11111        22567788899999999999864

>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2

Probab=91.84  E-value=0.034  Score=33.68  Aligned_cols=50  Identities=14%  Similarity=0.272  Sum_probs=32.2

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC----CceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK----EHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~----~~~l~d~Dvv~i~~~  122 (123)
                      ++.++.+ +|+.|+...+.  +..... | |     -..++-+-+    ++.|+|||.|+|+.-
T Consensus         9 ~~~~~~~-~tv~~ll~~l~--~~~~~v-~-v-----avN~~~v~~~~~~~~~L~~gD~v~i~~~   62 (66)
T 1f0z_A            9 AMQCAAG-QTVHELLEQLD--QRQAGA-A-L-----AINQQIVPREQWAQHIVQDGDQILLFQV   62 (66)
T ss_dssp             EECCCTT-CCHHHHHHHHT--CCCSSE-E-E-----EETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred             EEEcCCC-CcHHHHHHHcC--CCCCCE-E-E-----EECCEECCchhcCCcCCCCCCEEEEEee
Confidence            5566776 99999987663  111111 2 1     124455554    899999999999863

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=91.79  E-value=0.02  Score=47.74  Aligned_cols=43  Identities=16%  Similarity=0.174  Sum_probs=30.0

Q ss_pred             CcccCCCCCH--hhHH-HHh-------cC---CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI--EELD-IIY-------KI---PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~--e~l~-~l~-------~~---~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+...  +.+. .+.       .+   .+++++||++|.|+++|++.|...
T Consensus       109 viNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~~  164 (501)
T 1zo1_I          109 AVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQ  164 (501)
T ss_dssp             EEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTTT
T ss_pred             EEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhhh
Confidence            5799998743  2221 111       11   247899999999999999998754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=91.71  E-value=0.12  Score=36.24  Aligned_cols=45  Identities=13%  Similarity=0.135  Sum_probs=31.5

Q ss_pred             CcccCCCCCH-----hhHHHHhcCC--CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIYKIP--HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~~~~--~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...     ++...+...+  ..+.+||+++.|+++|.+.+.+.+.
T Consensus       116 v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          116 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIY  167 (199)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799998632     2233342212  3567999999999999999888764

>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}

Probab=91.48  E-value=0.32  Score=29.81  Aligned_cols=49  Identities=14%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             cEEEeCCCCCHHHHHHHhHHH--HH---hhcceeEEecCCCCCCCce-eCCCceecCCCeEEEEe
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRT--IA---KEFKYALVWGSSVKHQPQK-VGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d--~~---~~f~~A~vwg~s~k~~~q~-vg~~~~l~d~Dvv~i~~  121 (123)
                      .+-+ .+ +|+.|+-..+-..  +.   +.+..|+        +++. .+.++.|+|||.|.|+.
T Consensus        15 ~~e~-~~-~tv~~ll~~L~~~~~l~~~l~~~~vav--------N~~~v~~~~~~l~~gDeV~i~P   69 (74)
T 3rpf_C           15 NFFI-KA-NDLKELRAILQEKEGLKEWLGVCAIAL--------NDHLIDNLNTPLKDGDVISLLP   69 (74)
T ss_dssp             CEEE-EC-SSHHHHHHHHHTCTTTTTTTTTCEEEE--------SSSEECCTTCCCCTTCEEEEEC
T ss_pred             EEee-CC-CcHHHHHHHHHHCcCHHHHhhccEEEE--------CCEEcCCCCcCCCCCCEEEEEC
Confidence            4666 55 8999998776532  11   1222222        3334 47899999999999974

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=91.14  E-value=0.061  Score=43.38  Aligned_cols=15  Identities=27%  Similarity=0.260  Sum_probs=13.1

Q ss_pred             CeEEEeecCCcChHH
Q psy2927          21 HCVPLSAHHKWNFDD   35 (123)
Q Consensus        21 ~~v~ISA~~~~gld~   35 (123)
                      ..+++||.+|.|+++
T Consensus       188 ~~i~iSA~~g~~v~e  202 (435)
T 1jny_A          188 RFVPVVAPSGDNITH  202 (435)
T ss_dssp             EEEECBTTTTBTTTB
T ss_pred             eEEEeecccCccccc
Confidence            489999999999974

>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D

Probab=90.95  E-value=0.29  Score=30.13  Aligned_cols=49  Identities=18%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             eCCCCCHHHHHHHhH---HHHHhhcce--eEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          67 HTDRRSIEDFCNKLH---RTIAKEFKY--ALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        67 ~~g~~tv~d~a~~IH---~d~~~~f~~--A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +.+ +|+.|+...+-   ..+.+.+..  ..|     -..++.++.++.|+|||.|.|+.
T Consensus        23 ~~~-~tv~~ll~~L~~~~p~~~~~l~~~~~~v-----~vN~~~v~~~~~l~~gD~V~i~P   76 (81)
T 1fm0_D           23 ADF-PTVEALRQHMAAQSDRWALALEDGKLLA-----AVNQTLVSFDHPLTDGDEVAFFP   76 (81)
T ss_dssp             SCC-SBHHHHHHHHHTTCHHHHHHHCCTTCEE-----EETTEECCTTCBCCTTCEEEEEC
T ss_pred             CCC-CCHHHHHHHHHHHChhHHHHhcCCCEEE-----EECCEECCCCCCCCCCCEEEEeC
Confidence            354 89999977664   333322210  111     12567788999999999999974

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=90.71  E-value=0.023  Score=49.92  Aligned_cols=43  Identities=9%  Similarity=-0.123  Sum_probs=31.3

Q ss_pred             CcccCCCCCHhh-HHHH-h--------cCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEE-LDII-Y--------KIPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l-~--------~~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+++.+. ...+ .        .+..++++||.+|.|+++|.+++.+.
T Consensus       223 VlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          223 VITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             EEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             EEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            689999986543 1222 1        11247889999999999999999874

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=90.54  E-value=0.034  Score=41.02  Aligned_cols=24  Identities=8%  Similarity=0.087  Sum_probs=22.2

Q ss_pred             EEEeecCCcChHHHHHHHHHhhcc
Q psy2927          23 VPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus        23 v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      +++||.++.|+++|.+.|.+.+..
T Consensus       185 ~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          185 RAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccHHHHHHHHHHHHHHHHh
Confidence            789999999999999999998865

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=90.30  E-value=0.051  Score=41.00  Aligned_cols=46  Identities=13%  Similarity=0.136  Sum_probs=30.9

Q ss_pred             CcccCCCCCHhh--HHHHhc----C-CCeEE---EeecC---CcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE--LDIIYK----I-PHCVP---LSAHH---KWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~--l~~l~~----~-~~~v~---ISA~~---~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+...+.  .+.+..    + ...++   +||..   +.|+++|++.+.+.++.
T Consensus       204 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          204 VITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             EEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             EEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            689999985443  333321    1 23344   56666   78999999999999864

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=89.55  E-value=0.19  Score=46.43  Aligned_cols=45  Identities=16%  Similarity=0.062  Sum_probs=31.3

Q ss_pred             CcccCCCCC-Hhh-------HHHH-h--cC----CCeEEEeecCC--------cChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS-IEE-------LDII-Y--KI----PHCVPLSAHHK--------WNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~-~e~-------l~~l-~--~~----~~~v~ISA~~~--------~gld~L~e~i~~~L~   45 (123)
                      |+||+|+.. .+.       +..+ .  .+    .+++++||++|        .|+++|++.|.+.++
T Consensus       418 VINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip  485 (1289)
T 3avx_A          418 FLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIP  485 (1289)
T ss_dssp             EEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSC
T ss_pred             EEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcC
Confidence            589999985 321       2222 1  12    25899999999        568999999988664

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=89.52  E-value=0.022  Score=44.56  Aligned_cols=43  Identities=12%  Similarity=-0.022  Sum_probs=30.3

Q ss_pred             CcccCCCCCHhh--HHHHh--cC------CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEE--LDIIY--KI------PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~--l~~l~--~~------~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |+||+|+++...  .+.+.  .+      ..++++||.++.|+++|.+.+.+.
T Consensus       203 V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          203 VITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             EEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             EeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            689999985532  22221  11      135679999999999999988773

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=89.30  E-value=0.25  Score=34.55  Aligned_cols=44  Identities=14%  Similarity=0.130  Sum_probs=30.4

Q ss_pred             CcccCCCCCH-----hhHHHHhcCC--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIYKIP--HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~~~~--~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...     ++...+...+  ..+.+||+++.|++++.+.+.+.+
T Consensus       140 v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          140 VGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            5799998632     2233332212  356699999999999999988754

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=89.29  E-value=0.13  Score=44.10  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=22.6

Q ss_pred             CeEEEeec--------------CCcChHHHHHHHHHhhc
Q psy2927          21 HCVPLSAH--------------HKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        21 ~~v~ISA~--------------~~~gld~L~e~i~~~L~   45 (123)
                      .++++||+              ++.|+++|.+.+.+.+.
T Consensus       286 ~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          286 RVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             TEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence            58999999              99999999999988774

>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A

Probab=88.89  E-value=0.19  Score=31.72  Aligned_cols=51  Identities=14%  Similarity=0.246  Sum_probs=32.4

Q ss_pred             cEEEe--CCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCC----ceecCCCeEEEEec
Q psy2927          63 PVVLH--TDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKE----HVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~--~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~----~~l~d~Dvv~i~~~  122 (123)
                      +.-++  .+ +|+.++...+--+-.+.  .|.      ...++-|-++    +.|+|||.|+|++-
T Consensus         9 ~~e~~~~~~-~Tl~~LL~~l~~~~~~~--vAV------avNg~iVpr~~~~~~~L~dGD~IEIv~~   65 (78)
T 2k5p_A            9 PSTVDGAES-LNVTELLSALKVAQAEY--VTV------ELNGEVLEREAFDATTVKDGDAVEFLYF   65 (78)
T ss_dssp             EEECSSCSC-EEHHHHHHHHTCSCTTT--CCE------EETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred             EEEcCCCCC-CcHHHHHHHcCCCCCCc--EEE------EECCEECChHHcCcccCCCCCEEEEEee
Confidence            56666  76 89999986542110112  232      2355666665    89999999999863

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=88.61  E-value=0.095  Score=42.67  Aligned_cols=36  Identities=14%  Similarity=0.079  Sum_probs=24.0

Q ss_pred             CcccCCCCC--HhhH-------HHH-h--cC----CCeEEEeecCCcChHHH
Q psy2927           1 MQKVSDQIS--IEEL-------DII-Y--KI----PHCVPLSAHHKWNFDDL   36 (123)
Q Consensus         1 V~NKiD~~~--~e~l-------~~l-~--~~----~~~v~ISA~~~~gld~L   36 (123)
                      |+||+|+..  ++.+       ..+ .  .+    ..++++||++|.|++++
T Consensus       151 viNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          151 AVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             EEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             EEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            589999983  3322       111 1  22    36899999999999754

>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2

Probab=87.42  E-value=0.3  Score=31.51  Aligned_cols=51  Identities=25%  Similarity=0.390  Sum_probs=31.0

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCC----CceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGK----EHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~----~~~l~d~Dvv~i~~~  122 (123)
                      ++-++.+++|+.|+...+-  +... ..|.      ...++-|-+    ++.|+|||.|+|++-
T Consensus        29 ~~el~~~~~Tv~dLL~~L~--~~~~-~vaV------avNg~iV~~~~~~~~~L~dGD~Vei~~~   83 (87)
T 1tyg_B           29 DVKWKKDTGTIQDLLASYQ--LENK-IVIV------ERNKEIIGKERYHEVELCDRDVIEIVHF   83 (87)
T ss_dssp             EECCSSSCCBHHHHHHHTT--CTTS-CCEE------EETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred             EEECCCCCCcHHHHHHHhC--CCCC-CEEE------EECCEECChhhcCCcCCCCCCEEEEEcc
Confidence            4445552279999987763  2211 1121      124455554    789999999999863

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=87.08  E-value=0.16  Score=41.39  Aligned_cols=16  Identities=31%  Similarity=0.341  Sum_probs=13.7

Q ss_pred             CeEEEeecCCcChHHH
Q psy2927          21 HCVPLSAHHKWNFDDL   36 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L   36 (123)
                      .++++||++|.|+++|
T Consensus       227 ~~i~vSA~~g~~i~~l  242 (467)
T 1r5b_A          227 KYMPVSAYTGQNVKDR  242 (467)
T ss_dssp             EEEECBTTTTBTTSSC
T ss_pred             eEEecccccccccccc
Confidence            3789999999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=85.69  E-value=0.25  Score=38.87  Aligned_cols=45  Identities=11%  Similarity=0.119  Sum_probs=23.6

Q ss_pred             CcccCCCCCHhhHHH----Hh----cC-CCeEEEeecCCcC---hHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDI----IY----KI-PHCVPLSAHHKWN---FDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l~----~~-~~~v~ISA~~~~g---ld~L~e~i~~~L~   45 (123)
                      |+||+|++...++..    +.    .. -.++++||.++.|   +..|.+.|.+.++
T Consensus       180 V~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~~e~~~~l~~~i~~~ip  236 (361)
T 2qag_A          180 VIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDEDEDFKEQTRLLKASIP  236 (361)
T ss_dssp             EEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC---------CHHHHHHHHHTCS
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCcchhHHHHHHHHHhcCC
Confidence            689999987765432    21    11 1468899999877   3445566655554

>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}

Probab=85.28  E-value=0.46  Score=31.88  Aligned_cols=17  Identities=41%  Similarity=0.685  Sum_probs=15.6

Q ss_pred             CCCceecCCCeEEEEec
Q psy2927         106 GKEHVLNDEDVVQIVKK  122 (123)
Q Consensus       106 g~~~~l~d~Dvv~i~~~  122 (123)
                      |.+|+|+|||.|.|++.
T Consensus        82 gldt~L~dgD~V~fist   98 (110)
T 2k9x_A           82 GMDYVLNDGDTVEFIST   98 (110)
T ss_dssp             SSCCCCCSSCEEEEEEC
T ss_pred             CcccCCCCcCEEEEeCC
Confidence            89999999999999874

>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}

Probab=84.61  E-value=1.7  Score=28.05  Aligned_cols=16  Identities=38%  Similarity=0.613  Sum_probs=14.8

Q ss_pred             CCCceecCCCeEEEEe
Q psy2927         106 GKEHVLNDEDVVQIVK  121 (123)
Q Consensus       106 g~~~~l~d~Dvv~i~~  121 (123)
                      +.++.|+|||.|.|+.
T Consensus        79 ~~~~~L~~gD~V~i~p   94 (99)
T 2l52_A           79 GLETLLKDSDEIGILP   94 (99)
T ss_dssp             STTSCCCTTEEEEEEC
T ss_pred             CCCCCCCCCCEEEEEC
Confidence            8999999999999975

>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A

Probab=83.38  E-value=1.7  Score=28.01  Aligned_cols=58  Identities=12%  Similarity=0.205  Sum_probs=32.2

Q ss_pred             cEEEe--CCCCCHHHHHHHhHHHHHh----h--cc-eeEEecC-CCCCCCce----eCCCceecCCCeEEEEe
Q psy2927          63 PVVLH--TDRRSIEDFCNKLHRTIAK----E--FK-YALVWGS-SVKHQPQK----VGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        63 ~~~l~--~g~~tv~d~a~~IH~d~~~----~--f~-~A~vwg~-s~k~~~q~----vg~~~~l~d~Dvv~i~~  121 (123)
                      .+-++  .+ +|+.|+...+-.....    -  |. -+.+-.. ..-..+..    -|.++.|+|||.|-|+.
T Consensus        23 ~~~l~~~~~-~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~~~~~~d~~L~dgDeVa~~P   94 (99)
T 2qjl_A           23 KIKMDKEDP-VTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWELEGEKDYILEDGDIISFTS   94 (99)
T ss_dssp             EEEECSCSC-CBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGGGGTGGGCBCCTTCEEEEEE
T ss_pred             EEecCCCCC-CcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEccccCCCCcCcCCCCEEEEEC
Confidence            45556  66 8999998777554311    1  10 0000000 00012222    27899999999999975

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=83.08  E-value=0.66  Score=35.36  Aligned_cols=40  Identities=10%  Similarity=0.087  Sum_probs=24.5

Q ss_pred             CcccCCCCCHhh-----------HHHH-hcC----CCeEEEeecCCcChHHHHHHHH
Q psy2927           1 MQKVSDQISIEE-----------LDII-YKI----PHCVPLSAHHKWNFDDLLEKMW   41 (123)
Q Consensus         1 V~NKiD~~~~e~-----------l~~l-~~~----~~~v~ISA~~~~gld~L~e~i~   41 (123)
                      |+||+|+...+.           +..+ ..+    ...+++||.+ .|+.++...+.
T Consensus       121 v~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv  176 (307)
T 3r7w_A          121 LLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIV  176 (307)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHH
T ss_pred             EEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHH
Confidence            579999987322           2223 122    3578899999 66665544443

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=81.46  E-value=0.44  Score=36.50  Aligned_cols=43  Identities=12%  Similarity=0.091  Sum_probs=21.0

Q ss_pred             CcccCCCCCHhhHH----H---H-hcC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELD----I---I-YKI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~---l-~~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...+++.    .   . ... -..+.+||.++ |++++.+.+.+.+
T Consensus       161 V~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i  212 (301)
T 2qnr_A          161 VIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLL  212 (301)
T ss_dssp             EECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHh
Confidence            57999998764432    1   1 122 24678999999 9998877766655

>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A

Probab=80.32  E-value=1.4  Score=27.87  Aligned_cols=16  Identities=31%  Similarity=0.480  Sum_probs=14.2

Q ss_pred             CCCceecCCCeEEEEe
Q psy2927         106 GKEHVLNDEDVVQIVK  121 (123)
Q Consensus       106 g~~~~l~d~Dvv~i~~  121 (123)
                      |.++.|+|||.|.|+.
T Consensus        73 ~~~~~L~~gDeV~i~P   88 (93)
T 3dwg_C           73 GLATAIADGDSVTILP   88 (93)
T ss_dssp             GGGCBCCTTCEEEEEE
T ss_pred             CCCcCCCCCCEEEEEC
Confidence            5799999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1wxqa2	76	d.15.10.2 (A:320-395) GTP-binding protein PH0525 {	4e-09

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 76

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: G domain-linked domain
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 47.8 bits (114), Expect = 4e-09
 Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 10/72 (13%)

Query: 50  YTKPKGQ-LPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKE 108
            T   G  LP      ++     +  D   K+H  + K F YA+   +      ++VG++
Sbjct: 12  LTDQFGNVLPH---VFLMK-KGSTPRDLAFKVHTDLGKGFLYAINARTK-----RRVGED 62

Query: 109 HVLNDEDVVQIV 120
           + L   D+V+IV
Sbjct: 63  YELQFNDIVKIV 74

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1wxqa2	76	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.87
d1ni3a2	82	YchF GTP-binding protein, C-terminal domain {Fissi	99.65
d1jala2	85	YchF GTP-binding protein, C-terminal domain {Haemo	99.63
d1tkea1	62	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	98.5
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.23
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.22
d1nyra2	59	Threonyl-tRNA synthetase (ThrRS), N-terminal 'addi	98.2
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.12
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.96
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	97.94
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.82
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.8
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.79
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.77
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.65
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.62
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.58
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.54
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.29
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.29
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.18
d2hj1a1	77	Hypothetical protein HI0395 {Haemophilus influenza	97.06
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.99
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	96.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.77
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.76
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.7
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.69
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.68
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.66
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.64
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.52
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.51
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.5
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.45
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	96.34
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.33
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	96.32
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.24
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.14
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.13
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.13
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.12
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.11
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.09
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.06
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.98
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.91
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.91
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.88
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.81
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.77
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.72
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.65
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.52
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.51
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.45
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.28
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.15
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.0
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.96
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	94.91
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	94.9
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	94.76
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	94.73
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	94.71
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	94.54
d1vjka_	88	Molybdopterin synthase subunit MoaD {Pyrococcus fu	94.53
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	94.11
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	94.1
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	94.09
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	94.02
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	93.69
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	93.41
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.29
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	92.03
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.9
d1xo3a_	101	C9orf74 homolog {Mouse (Mus musculus) [TaxId: 1009	91.19
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	91.1
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	90.84
d1zud21	65	Thiamin biosynthesis sulfur carrier protein ThiS {	89.39
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.34
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	88.85
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	81.33

>d1wxqa2 d.15.10.2 (A:320-395) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: G domain-linked domain
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.87  E-value=1e-22  Score=131.03  Aligned_cols=65  Identities=28%  Similarity=0.443  Sum_probs=56.2

Q ss_pred             eEEeCCCCC-CCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          48 RIYTKPKGQ-LPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        48 rvytk~~g~-~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +-|++++|+ .||   +++||+| ||+.|+|++||+||+++|++|++|+     +||++|++|+|+|||+|+|+|
T Consensus        10 ~~~~~~~g~vl~D---~~~Lp~G-sTv~D~A~~IH~dlg~~~~~A~~~~-----~g~~v~l~~~L~dgDvVeIiT   75 (76)
T d1wxqa2          10 NKLTDQFGNVLPH---VFLMKKG-STPRDLAFKVHTDLGKGFLYAINAR-----TKRRVGEDYELQFNDIVKIVS   75 (76)
T ss_dssp             -----CCSCSSCC---CEEEETT-CCHHHHHHHHCHHHHHTEEEEEETT-----TCSBCCTTCCCCTTEEEEEEE
T ss_pred             CEEECCCCCCccc---cEEeCCC-CcHHHHHHHHhHHHHhheEEEEECc-----CCEECCCCcCccCCCEEEEEE
Confidence            445678887 687   9999998 9999999999999999999999876     579999999999999999997

>d1ni3a2 d.15.10.2 (A:307-388) YchF GTP-binding protein, C-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: G domain-linked domain
domain: YchF GTP-binding protein, C-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=3.3e-17  Score=105.73  Aligned_cols=69  Identities=14%  Similarity=0.184  Sum_probs=58.4

Q ss_pred             cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecC----------CCCCCC--ceeCCCceecC
Q psy2927          46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGS----------SVKHQP--QKVGKEHVLND  113 (123)
Q Consensus        46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~----------s~k~~~--q~vg~~~~l~d  113 (123)
                      |+..||.++.    ..++|++++| +|++++|+.||+||+++|..|.|...          .+|-.|  +..|+||+++|
T Consensus         1 LitffT~G~~----EvraWti~~g-~~Ap~AAG~IHsDfekgFIrAEvi~~~D~i~~g~~~~~k~~Gk~r~eGKdYiv~D   75 (82)
T d1ni3a2           1 LINYFTCGED----EVRSWTIRKG-TKAPQAAGVIHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMES   75 (82)
T ss_dssp             EEEEEECCSS----EEEEEEEETT-CBHHHHHHHHCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCT
T ss_pred             CceEEcCCCC----ceeEEEeccc-cchHHHhhhhhHHHhhccEEEEEecHHHHHHcCCHHHHHHhCchhhcCCcceEeC
Confidence            4688998855    6889999998 99999999999999999999999842          122233  77999999999


Q ss_pred             CCeEEE
Q psy2927         114 EDVVQI  119 (123)
Q Consensus       114 ~Dvv~i  119 (123)
                      |||+.+
T Consensus        76 GDVi~F   81 (82)
T d1ni3a2          76 GDIAHW   81 (82)
T ss_dssp             TCEEEC
T ss_pred             CcEEEe
Confidence            999975

>d1jala2 d.15.10.2 (A:279-363) YchF GTP-binding protein, C-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: G domain-linked domain
domain: YchF GTP-binding protein, C-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.63  E-value=5.4e-17  Score=105.41  Aligned_cols=70  Identities=19%  Similarity=0.199  Sum_probs=59.1

Q ss_pred             cceEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCC----------CCCCC--ceeCCCceecC
Q psy2927          46 LTRIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSS----------VKHQP--QKVGKEHVLND  113 (123)
Q Consensus        46 ~irvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s----------~k~~~--q~vg~~~~l~d  113 (123)
                      |+..||.++.    ..++|++++| +|++++|+.||+||+++|+.|.|...+          +|-.|  +..|+||+++|
T Consensus         1 L~tFfT~G~~----E~raWti~~G-~~Ap~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~~k~~Gk~r~eGKdYiv~D   75 (85)
T d1jala2           1 LQTYFTAGVK----EVRAWTVSVG-ATAPKAAAVIHTDFEKGFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQD   75 (85)
T ss_dssp             EEEEEEECSS----EEEEEEEETT-CBHHHHHHTTCTTHHHHCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCT
T ss_pred             CcceecCCCC----eeEEeecccc-cchhhhhCceechhhhCcEEEEEEcHHHHHHcCCHHHHHHcCcchhhCCCCcEeC
Confidence            4578888755    6889999998 999999999999999999999999421          22223  78999999999


Q ss_pred             CCeEEEE
Q psy2927         114 EDVVQIV  120 (123)
Q Consensus       114 ~Dvv~i~  120 (123)
                      |||+.+.
T Consensus        76 GDii~F~   82 (85)
T d1jala2          76 GDVMHFR   82 (85)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEE
Confidence            9999885

>d1tkea1 d.15.10.1 (A:1-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.2e-07  Score=57.13  Aligned_cols=52  Identities=13%  Similarity=0.098  Sum_probs=47.2

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      ..-++.| +|+.|+|..||++++++...|.|       .|+.+.++|.|++++.|+|+|.
T Consensus        11 ~~~~~~g-~T~~diA~~I~~~l~k~avaa~v-------ng~l~dL~~~l~~d~~veiiTs   62 (62)
T d1tkea1          11 QRHYDHA-VSPMDVALDIGPGLAKACIAGRV-------NGELVDACDLIENDAQLSIITA   62 (62)
T ss_dssp             EEECSSC-BCHHHHHHHHCHHHHHHCCEEEE-------TTEEEETTCCBCSCEEEEEECT
T ss_pred             EEEcCCC-CCHHHHHHHHCchhhheEEEEEE-------CCEEeCCCcCcCCCCEEEEEeC
Confidence            5567887 99999999999999999999986       6789999999999999999974

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.23  E-value=3.7e-07  Score=63.76  Aligned_cols=46  Identities=24%  Similarity=0.312  Sum_probs=35.5

Q ss_pred             CcccCCCCCHhhHH-------HH-h---c--CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELD-------II-Y---K--IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~-------~l-~---~--~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|++..++++       .+ .   .  ..+++||||++|+|+++|++.|.+.|+.
T Consensus       117 v~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         117 VITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             EEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            68999999775432       11 1   1  2368999999999999999999998864

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.22  E-value=6.2e-07  Score=61.97  Aligned_cols=46  Identities=15%  Similarity=0.135  Sum_probs=37.5

Q ss_pred             CcccCCCCCHhhHHHH----h-cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDII----Y-KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~-~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+++.++++.+    . ...++++|||++|+|+++|++.|.+.|..
T Consensus       119 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         119 ALNKVDLLEEEAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhHHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            5899999988765544    1 23368999999999999999999999864

>d1nyra2 d.15.10.1 (A:4-62) Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: TGS-like
family: TGS domain
domain: Threonyl-tRNA synthetase (ThrRS), N-terminal 'additional' domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.20  E-value=6.6e-07  Score=53.36  Aligned_cols=50  Identities=16%  Similarity=0.201  Sum_probs=45.2

Q ss_pred             cEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927          63 PVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIV  120 (123)
Q Consensus        63 ~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~  120 (123)
                      ...++.| +|+.|+|+.||+.+++....|.|       .|+.+.++|+|++++.|+|+
T Consensus        10 ~~~~~~g-~T~~diA~~I~~~l~k~avaa~v-------Ng~~~dL~~~l~~d~~veii   59 (59)
T d1nyra2          10 KKAFDKG-TTTEDIAQSISPGLRKKAVAGKF-------NGQLVDLTKPLETDGSIEIV   59 (59)
T ss_dssp             CCBCCTT-CCHHHHHHTTCHHHHHHCCEEEE-------TTEEECTTSCCCSCBCCCEE
T ss_pred             EEEcCCC-CCHHHHHHHHChhhhheEEEEEE-------CCEEccCCcCcCCCCEEEEC
Confidence            5567787 99999999999999999999986       67889999999999999985

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.12  E-value=4.6e-07  Score=62.16  Aligned_cols=46  Identities=24%  Similarity=0.370  Sum_probs=35.4

Q ss_pred             CcccCCCCCHhhH---HHHh--cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEEL---DIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l---~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|++.+.+.   ..+.  .+.+.++|||++|.|+++|++.|.+.|+.
T Consensus       115 v~NK~Dl~~~~~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         115 VANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEE  165 (171)
T ss_dssp             EEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCC
Confidence            5899998754332   2221  34578999999999999999999998853

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.96  E-value=1.6e-06  Score=59.99  Aligned_cols=46  Identities=20%  Similarity=0.156  Sum_probs=35.9

Q ss_pred             CcccCCCCCHhh-HHHHh----cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEE-LDIIY----KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l~----~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+..+ ++.+.    ...++++|||.+|+|+++|++.|.+.|..
T Consensus       123 v~NK~Dl~~~~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         123 VANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             EEECTTSTTHHHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             hccccchHhHHHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            579999986643 44442    22357899999999999999999999864

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=97.94  E-value=3.3e-06  Score=59.46  Aligned_cols=45  Identities=22%  Similarity=0.297  Sum_probs=33.8

Q ss_pred             CcccCCCCCHhhH----HHH----hcC----CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEEL----DII----YKI----PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l----~~l----~~~----~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ++||+|+.+..+.    +.+    ..+    .++|||||++|+|+++|+++|.+.++
T Consensus       138 ~inK~D~~d~~~~~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~iP  194 (195)
T d1kk1a3         138 AQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  194 (195)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eeecccchhhHHHHHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHCc
Confidence            4799999876432    111    111    24799999999999999999999875

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.82  E-value=5.2e-06  Score=57.81  Aligned_cols=45  Identities=13%  Similarity=0.148  Sum_probs=34.4

Q ss_pred             CcccCCCCCHhhHHH----Hh------cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDI----IY------KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l~------~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|++.+++++.    +.      .....+++||.+|+|+++|++.|.+.|+
T Consensus       140 v~NK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         140 IATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             EEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             chhhccccCHHHHHHHHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            689999986654322    21      1225799999999999999999999875

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.80  E-value=8.3e-06  Score=54.58  Aligned_cols=43  Identities=19%  Similarity=0.129  Sum_probs=33.3

Q ss_pred             CcccCCCCCHhhHHHH----hcCCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEELDII----YKIPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~~~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ++||+|+.+..+.+.+    ....+++++||++|.|+++|+++|++.
T Consensus       113 ~~~k~d~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         113 VINKVDVVEKINEEEIKNKLGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             EEEECSSCCCCCHHHHHHHHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             eeeeccccchhhhHHHHHHhCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            4799998865443333    244579999999999999999999874

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.79  E-value=8e-06  Score=57.99  Aligned_cols=45  Identities=40%  Similarity=0.464  Sum_probs=33.6

Q ss_pred             CcccCCCCCHhhHHH----H----hc--C--CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELDI----I----YK--I--PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~~----l----~~--~--~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ++||+|+.+.++...    +    ..  +  -+++||||++|.|+++|++.|.++++
T Consensus       146 ~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~ip  202 (205)
T d2qn6a3         146 VQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  202 (205)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             ccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhCC
Confidence            479999987653211    1    11  1  24799999999999999999999865

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=5e-07  Score=60.91  Aligned_cols=43  Identities=14%  Similarity=0.081  Sum_probs=31.9

Q ss_pred             CcccCCCCCHhh-HHHHhcCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEE-LDIIYKIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~-l~~l~~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...+. +.++ ...++++|||++|+|+++|++.|.+.|
T Consensus       118 v~NK~Dl~~~~~~~~~~-~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         118 VRNKADITGETLGMSEV-NGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             EEECHHHHCCCCEEEEE-TTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             ccchhhhhhhHHHHHHh-CCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            589999765432 2211 223589999999999999999998865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.65  E-value=1.6e-05  Score=56.18  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=21.4

Q ss_pred             CeEEEeecCCcChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      +.+|+||.+|+|+++|+..|.+.
T Consensus       218 ~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         218 RVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             CCEECCTTTCTTHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            68999999999999999999885

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.62  E-value=6.9e-06  Score=56.11  Aligned_cols=45  Identities=20%  Similarity=0.408  Sum_probs=33.0

Q ss_pred             CcccCCCCCH-hh-HHHHh---c--CC----CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-EE-LDIIY---K--IP----HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-e~-l~~l~---~--~~----~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|++.. +. .+.+.   .  +.    ..+|+||++|.|+++|++.|.+.|+
T Consensus       127 v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~  182 (184)
T d2cxxa1         127 AVNKLDKIKNVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIR  182 (184)
T ss_dssp             EEECGGGCSCHHHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEeeeehhhhHHHHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHcc
Confidence            5899998843 32 22221   1  11    3789999999999999999999886

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.58  E-value=1.7e-05  Score=53.50  Aligned_cols=44  Identities=14%  Similarity=0.199  Sum_probs=32.9

Q ss_pred             CcccCCCCCHhhHH----H----Hhc---CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEELD----I----IYK---IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~----l~~---~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ++||+|++...+..    .    +..   ..+++++||++|.|+++|++.|-+.|
T Consensus       133 v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         133 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            47999998765432    1    111   22578999999999999999998876

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.54  E-value=6.8e-06  Score=56.49  Aligned_cols=45  Identities=16%  Similarity=0.095  Sum_probs=34.4

Q ss_pred             CcccCCCCCH-hh-HHHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-EE-LDIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-e~-l~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+... ++ ++.+. .  ....++|||++|.|+++|++.|.+.|+
T Consensus       121 v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~lp  170 (178)
T d1wf3a1         121 VGNKLDAAKYPEEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALMP  170 (178)
T ss_dssp             EEECGGGCSSHHHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCC
T ss_pred             hhcccccccCHHHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhCC
Confidence            5899999853 33 33332 2  335789999999999999999999885

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.29  E-value=7.6e-05  Score=50.44  Aligned_cols=45  Identities=20%  Similarity=0.282  Sum_probs=33.4

Q ss_pred             CcccCCCCCH-hhH----HHHh-c--CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-EEL----DIIY-K--IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-e~l----~~l~-~--~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|.+.. +++    +.+. .  ..+++++||++|.|+++|++.|.+.|+
T Consensus       119 v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         119 AVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             EEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCC
T ss_pred             eeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhCC
Confidence            5799997743 333    2221 2  235899999999999999999999884

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=97.29  E-value=5.7e-05  Score=50.87  Aligned_cols=46  Identities=20%  Similarity=0.019  Sum_probs=32.6

Q ss_pred             CcccCCCCCHh---hHHHH-h---cC---CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIE---ELDII-Y---KI---PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l-~---~~---~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+....   ++... .   ..   ..++++||++|+|++++.+.|.+.|.+
T Consensus       122 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~lk~  177 (177)
T d1zj6a1         122 FANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  177 (177)
T ss_dssp             EEECTTSTTCCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             EEEcccccccCcHHHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHhCC
Confidence            57999986432   23222 1   11   147789999999999999999988753

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.18  E-value=0.00013  Score=49.68  Aligned_cols=45  Identities=18%  Similarity=0.242  Sum_probs=32.9

Q ss_pred             CcccCCCCCHhh-----HH-HHh------cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEE-----LD-IIY------KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~-----l~-~l~------~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+....+     +. .+.      .+.+++++||++|.|+++|++.|.+.+.
T Consensus       126 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~  182 (186)
T d1mkya2         126 VFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYA  182 (186)
T ss_dssp             EEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             eccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            579999874422     21 121      2346899999999999999999988764

>d2hj1a1 d.15.3.4 (A:11-87) Hypothetical protein HI0395 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: HI0395-like
domain: Hypothetical protein HI0395
species: Haemophilus influenzae [TaxId: 727]

Probab=97.06  E-value=7e-05  Score=46.72  Aligned_cols=60  Identities=15%  Similarity=0.271  Sum_probs=41.5

Q ss_pred             eEEeCCCCCCCCCcccEEEeCCCCCHHHHHHHhHHHHHhhcce-------eEEecCCCCCCCceeCCCceecCCCeEEEE
Q psy2927          48 RIYTKPKGQLPDYQSPVVLHTDRRSIEDFCNKLHRTIAKEFKY-------ALVWGSSVKHQPQKVGKEHVLNDEDVVQIV  120 (123)
Q Consensus        48 rvytk~~g~~pd~~~~~~l~~g~~tv~d~a~~IH~d~~~~f~~-------A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~  120 (123)
                      -+|..+..+   +-.++.++.| +|+.|+...  +-+.+.|--       -=|||       +.+.++|+|+|||-|+|.
T Consensus         7 VvYA~p~~q---~~~~l~v~~G-tTv~~Ai~~--Sgi~~~fpeidl~~~~vGIfG-------k~v~~~~~L~~gDRVEIY   73 (77)
T d2hj1a1           7 IAYAFPERY---YLKSFQVDEG-ITVQTAITQ--SGILSQFPEIDLSTNKIGIFS-------RPIKLTDVLKEGDRIEIY   73 (77)
T ss_dssp             EEEEETTEE---EEEEEEEETT-CBHHHHHHH--HTHHHHCTTCCTTTSEEEEEE-------CSCCTTCBCCTTCEEEEC
T ss_pred             EEEECCCee---EEEEEECCCC-CcHHHHHHH--cCcHhhCcccccccccEeEEC-------cCcCCCCcCCCCCEEEEe
Confidence            446554443   4558889998 999998643  566665532       23455       456689999999999984

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.99  E-value=0.00014  Score=49.08  Aligned_cols=43  Identities=9%  Similarity=0.046  Sum_probs=29.7

Q ss_pred             CcccCCCCCHhh---HHH-Hh----c--CCCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISIEE---LDI-IY----K--IPHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~-l~----~--~~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||+|+.+...   +.+ +.    .  ....+++||++|+|++++.+.+.+.
T Consensus       123 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         123 FANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             EEEeccccccccHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            479999975432   221 11    1  1136789999999999999988764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=96.89  E-value=0.00029  Score=47.98  Aligned_cols=45  Identities=18%  Similarity=0.142  Sum_probs=31.7

Q ss_pred             CcccCCCCC---HhhHHHH-h--cC---C-CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS---IEELDII-Y--KI---P-HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~---~e~l~~l-~--~~---~-~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+.+   .+++... .  ..   . .++++||++|+|++++.+.|.+.+.
T Consensus       124 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~  178 (182)
T d1moza_         124 FANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK  178 (182)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHH
T ss_pred             EEEeeccccccCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            479999864   3343322 1  11   1 3688999999999999999888764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.77  E-value=8.7e-05  Score=53.34  Aligned_cols=24  Identities=21%  Similarity=0.260  Sum_probs=21.3

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      +.+|+||.+|.|+++|++.+.+..
T Consensus       193 ~i~pvSa~~G~gid~Ll~~l~~l~  216 (227)
T d1g7sa4         193 SIIPISAITGEGIPELLTMLMGLA  216 (227)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHH
Confidence            478999999999999999988765

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.76  E-value=0.00061  Score=49.89  Aligned_cols=48  Identities=15%  Similarity=0.079  Sum_probs=33.8

Q ss_pred             CcccCCCCCHhhHHHH----h---cCCCeEEEeecCCcChHHHHHHHHHhhccceEEe
Q psy2927           1 MQKVSDQISIEELDII----Y---KIPHCVPLSAHHKWNFDDLLEKMWEYLKLTRIYT   51 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l----~---~~~~~v~ISA~~~~gld~L~e~i~~~L~~irvyt   51 (123)
                      |+||+|++++++.+.+    .   ..-.++.+||.++.|+++|.+.+.   +...++.
T Consensus        47 vlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l~---~kt~~~~  101 (225)
T d1u0la2          47 VINKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK---GKISTMA  101 (225)
T ss_dssp             EECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS---SSEEEEE
T ss_pred             EEeCcccCCHHHHHHHHHhhcccccceeEEEeccccchhHhhHHHHhc---CCeEEEE
Confidence            6899999987654332    1   112588999999999999988663   3344454

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.70  E-value=0.00037  Score=46.52  Aligned_cols=44  Identities=9%  Similarity=-0.028  Sum_probs=30.2

Q ss_pred             CcccCCCCCH---hhHHHH-h--cC--C--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI---EELDII-Y--KI--P--HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~l-~--~~--~--~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...   ++.... .  ..  .  .++.+||++|+|++++++.|.+.+
T Consensus       109 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i  162 (165)
T d1ksha_         109 FANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDI  162 (165)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeccccccccCHHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5799998643   222221 1  11  1  367899999999999999888765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.69  E-value=0.00071  Score=45.39  Aligned_cols=45  Identities=16%  Similarity=0.155  Sum_probs=32.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+. .+ ...+.+||++|.|++++...|.+.|+
T Consensus       115 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i~  166 (167)
T d1z0ja1         115 AGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIP  166 (167)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHCC
T ss_pred             ecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhCC
Confidence            5799998532     3344442 22 24688999999999999999988774

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.0011  Score=44.50  Aligned_cols=43  Identities=14%  Similarity=0.067  Sum_probs=30.4

Q ss_pred             CcccCCCCCH------hhHHHH-hcC--CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI------EELDII-YKI--PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~------e~l~~l-~~~--~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||+|+.+.      ++.+.+ ..+  ...+.+||++|.|++++.+.+.+.
T Consensus       118 v~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~  169 (175)
T d1ky3a_         118 LGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARS  169 (175)
T ss_dssp             EEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHH
T ss_pred             EecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHH
Confidence            5799997643      233344 222  357889999999999998877654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00098  Score=45.36  Aligned_cols=44  Identities=14%  Similarity=0.113  Sum_probs=31.9

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++..++. .. -..+.+||++|.|++++.+.+.+.+
T Consensus       127 v~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i  177 (186)
T d2f7sa1         127 IGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLI  177 (186)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHH
T ss_pred             EeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            5799997533     3444442 22 2579999999999999999888764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=96.64  E-value=0.00047  Score=46.59  Aligned_cols=44  Identities=14%  Similarity=0.052  Sum_probs=30.7

Q ss_pred             CcccCCCCCH---hhHHH-H--hcCC----CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI---EELDI-I--YKIP----HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~---e~l~~-l--~~~~----~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...   .++.. +  ....    ..+.+||.+|+|++++.+.|.+.+
T Consensus       119 v~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         119 FANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             eeecccccccccHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            5799998643   22322 1  1111    367799999999999999998865

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.52  E-value=0.00058  Score=44.68  Aligned_cols=45  Identities=20%  Similarity=0.128  Sum_probs=31.8

Q ss_pred             CcccCCCCCHh---hHH-HHh------cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIE---ELD-IIY------KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e---~l~-~l~------~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||.|+....   ++. .+.      ..-+.+++||.+|+|++++.+.|.+.|.
T Consensus       112 v~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~  166 (169)
T d1upta_         112 FANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK  166 (169)
T ss_dssp             EEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            47999987432   222 221      1114788999999999999999988764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00085  Score=44.68  Aligned_cols=45  Identities=18%  Similarity=0.180  Sum_probs=32.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+.+.     ++...+. ... ..+.+||++|.|++++.+.|.+.|+
T Consensus       111 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l~  162 (164)
T d1yzqa1         111 VGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP  162 (164)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHSC
T ss_pred             EecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhhC
Confidence            5699997643     2233332 222 4688999999999999999999885

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.50  E-value=0.0011  Score=50.37  Aligned_cols=46  Identities=17%  Similarity=0.108  Sum_probs=34.0

Q ss_pred             CcccCCCCCHhhHHH---------Hh--------cCCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISIEELDI---------IY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~e~l~~---------l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |+||+|+.+.+...+         +.        ..|+++.+||.++.|+++|.+.|.+....
T Consensus       195 vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         195 AVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             EEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             eEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            689999875543211         10        13468999999999999999999887653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.45  E-value=0.00071  Score=44.05  Aligned_cols=44  Identities=11%  Similarity=-0.099  Sum_probs=30.0

Q ss_pred             CcccCCCCCHh---hHHHH---h--c-C-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE---ELDII---Y--K-I-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e---~l~~l---~--~-~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||.|+.+..   ++...   .  . . -.++++||++|+|++++.+.|.+.|
T Consensus       107 v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         107 FANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             EeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            47899877432   22211   1  1 1 1367899999999999999988764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=96.34  E-value=0.0011  Score=44.69  Aligned_cols=44  Identities=23%  Similarity=0.174  Sum_probs=31.0

Q ss_pred             CcccCCCC-----CHhhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQI-----SIEELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~-----~~e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+.     +.++...+. .. -..+.+||++|.|++++.+.+.+.+
T Consensus       115 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i  165 (168)
T d1u8za_         115 VGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREI  165 (168)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            57999974     234444442 21 2478899999999999988777655

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.0011  Score=44.38  Aligned_cols=43  Identities=16%  Similarity=0.176  Sum_probs=30.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||+|+...     ++...+. .. -..+.+||++|.|++++.+.|.+.
T Consensus       112 VgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~  161 (164)
T d1z2aa1         112 VQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK  161 (164)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHH
T ss_pred             eeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHH
Confidence            5799998643     3344442 11 247889999999999998887654

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0011  Score=44.83  Aligned_cols=46  Identities=20%  Similarity=0.178  Sum_probs=32.4

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |.||+|+...     ++...+. .+ -..+.+||++|.|+++|.+.+.+.+..
T Consensus       117 vgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~  169 (172)
T d2g3ya1         117 VGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRL  169 (172)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             EeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            5799997533     3334442 11 146779999999999999988887643

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0019  Score=43.18  Aligned_cols=44  Identities=16%  Similarity=0.034  Sum_probs=30.6

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. . ....+.+||++|.|++++.+.+.+.|
T Consensus       115 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         115 IGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            4699997432     3334442 2 22478899999999999988877654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.002  Score=42.97  Aligned_cols=44  Identities=9%  Similarity=0.036  Sum_probs=31.8

Q ss_pred             CcccCCCCC----HhhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS----IEELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~----~e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+..    .++...+. . .-..+.+||++|.|++++.+.+.+.|
T Consensus       114 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i  163 (166)
T d1ctqa_         114 VGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI  163 (166)
T ss_dssp             EEECTTCSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EecccccccccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            579999764    23444442 1 12478999999999999998887765

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.14  E-value=0.0018  Score=43.27  Aligned_cols=45  Identities=16%  Similarity=0.181  Sum_probs=31.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++.+.+. .+ -..+.+||++|.|+++|.+.|.+...
T Consensus       114 VgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~~  165 (171)
T d2erxa1         114 VGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEK  165 (171)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             EeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            4699997532     3444442 21 24688999999999999998887643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0029  Score=42.51  Aligned_cols=43  Identities=16%  Similarity=0.008  Sum_probs=30.6

Q ss_pred             CcccCCCCC----HhhHHHHh-cC--CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQIS----IEELDIIY-KI--PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~----~e~l~~l~-~~--~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||+|+..    .++...+. ..  -..+.+||++|.|+++|.+.+.+.
T Consensus       121 VgnK~Dl~~~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~  170 (174)
T d1wmsa_         121 LGNKIDISERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRR  170 (174)
T ss_dssp             EEECTTCSSCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHH
T ss_pred             eccccchhhccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHH
Confidence            579999753    34444452 22  257889999999999998776554

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.13  E-value=0.0013  Score=43.96  Aligned_cols=44  Identities=23%  Similarity=0.239  Sum_probs=30.0

Q ss_pred             CcccCCCCCH---hhH-HHHh--cC----CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI---EEL-DIIY--KI----PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~---e~l-~~l~--~~----~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...   .++ +.+.  ..    -..+++||.+|.|++++.+.|.+..
T Consensus       110 v~nK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         110 LGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             EEECTTSTTCCCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEeccccchhhhHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            5799998643   222 2221  11    1368899999999999999887753

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0021  Score=42.93  Aligned_cols=44  Identities=14%  Similarity=0.169  Sum_probs=31.1

Q ss_pred             CcccCCCCC-----HhhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS-----IEELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+..     .++...+. .+ -..+.+||++|.|++++.+.+.+.+
T Consensus       114 vgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         114 VGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             eccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHH
Confidence            469999753     34455552 22 2468899999999999988777654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0021  Score=43.08  Aligned_cols=44  Identities=16%  Similarity=0.176  Sum_probs=31.7

Q ss_pred             CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. .+. ..+.+||++|.|++++.+.+.+.+
T Consensus       116 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i  166 (171)
T d2erya1         116 IGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVI  166 (171)
T ss_dssp             EEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHH
Confidence            5799997533     3444442 222 467899999999999999888765

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.09  E-value=0.0021  Score=48.98  Aligned_cols=45  Identities=13%  Similarity=0.214  Sum_probs=32.9

Q ss_pred             CcccCCCCCHhhHH----H----Hh--------cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISIEELD----I----IY--------KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~e~l~----~----l~--------~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |+||+|+...+...    .    +.        ..|+++.+||.+|.|+++|.+.|.++..
T Consensus       198 VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         198 VINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             EECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            68999987654321    1    11        1245888999999999999999988765

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.0022  Score=43.26  Aligned_cols=23  Identities=17%  Similarity=0.053  Sum_probs=19.6

Q ss_pred             CeEEEeecCCcChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ..+.+||++|.|++++.+.+.+.
T Consensus       152 ~~~E~SAkt~~gi~e~F~~i~~~  174 (177)
T d1kmqa_         152 GYMECSAKTKDGVREVFEMATRA  174 (177)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHH
Confidence            36779999999999998887764

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.98  E-value=0.002  Score=43.68  Aligned_cols=44  Identities=11%  Similarity=0.049  Sum_probs=30.3

Q ss_pred             CcccCCCCCH----hhHHHH-hc--CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI----EELDII-YK--IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l-~~--~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |+||+|+...    ++.+.+ ..  .-..+.+||++|.|+++|.+.+.+.+
T Consensus       117 v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i  167 (184)
T d1vg8a_         117 LGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNA  167 (184)
T ss_dssp             EEECTTSSCCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEeecccccchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            5799997643    223333 21  23578899999999999998876643

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.93  E-value=0.0011  Score=43.99  Aligned_cols=24  Identities=13%  Similarity=0.189  Sum_probs=21.0

Q ss_pred             eEEEeecCCcChHHHHHHHHHhhc
Q psy2927          22 CVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus        22 ~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      ++++||++|+|++++++-|.+.++
T Consensus       163 ~~~~SA~tg~Gi~e~~~~l~~~i~  186 (186)
T d1f6ba_         163 VFMCSVLKRQGYGEGFRWMAQYID  186 (186)
T ss_dssp             EEECBTTTTBSHHHHHHHHHTTCC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHhhC
Confidence            678999999999999998887663

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0028  Score=42.44  Aligned_cols=45  Identities=13%  Similarity=0.064  Sum_probs=32.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+. .. -..+.+||++|.|+++|.+.|.+.|.
T Consensus       117 vgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         117 SGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             ecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            5799997533     3344442 22 24788999999999999999987664

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0025  Score=42.99  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=31.8

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+. .. -..+.+||++|.|+++|.+.+.+.+.
T Consensus       117 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  168 (173)
T d2fn4a1         117 VGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVR  168 (173)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            5799997532     3334442 22 23677999999999999998888763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.88  E-value=0.0026  Score=42.90  Aligned_cols=44  Identities=14%  Similarity=0.118  Sum_probs=29.9

Q ss_pred             CcccCCCCCHh-----hHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+.+..     ......  .....+.+||.+|.|++++.+.+.+.+
T Consensus       115 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         115 VGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHH
Confidence            57999976431     111121  223578899999999999887777654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.81  E-value=0.0026  Score=42.63  Aligned_cols=42  Identities=12%  Similarity=-0.012  Sum_probs=28.2

Q ss_pred             CcccCCCCCH-----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHH
Q psy2927           1 MQKVSDQISI-----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~   42 (123)
                      |.||+|+...     ++...+.  ..-..+++||++|.|++++.+.+.+
T Consensus       116 vgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~  164 (171)
T d2ew1a1         116 VGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC  164 (171)
T ss_dssp             EEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHH
T ss_pred             EEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHH
Confidence            4799997643     2333342  1124789999999999998665443

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0043  Score=41.64  Aligned_cols=44  Identities=18%  Similarity=0.052  Sum_probs=29.4

Q ss_pred             CcccCCCCC-----HhhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQIS-----IEELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+..     .++...++ . .-..+.+||++|.|++++.+.+.+.+
T Consensus       114 v~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i  164 (173)
T d2a5ja1         114 IGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEI  164 (173)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHH
T ss_pred             EecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHH
Confidence            469999642     23344442 1 12478899999999999877766643

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0024  Score=42.57  Aligned_cols=45  Identities=18%  Similarity=0.065  Sum_probs=31.7

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+. . .-..+.+||++|.|++++.+.+.+.|.
T Consensus       114 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         114 VGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             EEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            5799997633     2333332 1 124788999999999999998887664

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0043  Score=41.53  Aligned_cols=44  Identities=18%  Similarity=0.088  Sum_probs=30.9

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. . .-..+.+||++|.|++++.+.+.+.+
T Consensus       111 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i  161 (168)
T d2gjsa1         111 VGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQI  161 (168)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             eecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            4699997643     2333332 1 12468899999999999998887755

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.52  E-value=0.004  Score=41.83  Aligned_cols=44  Identities=16%  Similarity=0.075  Sum_probs=30.6

Q ss_pred             CcccCCCCCHhh---HHHHh-cC-CCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIEE---LDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e~---l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+.....   ..... .. -..+.+||++|.|++++.+.+.+.|
T Consensus       113 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_         113 CGNKVDIKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             EEECCCCSCSCCTTTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             ecchhhhhhhhhhhHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            579999874421   11222 21 1368899999999999998888765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0026  Score=42.38  Aligned_cols=43  Identities=14%  Similarity=0.031  Sum_probs=29.9

Q ss_pred             CcccCCCCC-----HhhHHHHh-cC-CCeEEEeecCCcChHHHHHHHHHh
Q psy2927           1 MQKVSDQIS-----IEELDIIY-KI-PHCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l~-~~-~~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      |.||+|+..     .++...+. ++ -..+.+||++|.|++++.+.+.+.
T Consensus       115 vgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~  164 (167)
T d1xtqa1         115 VGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILE  164 (167)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             eccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHH
Confidence            579999753     34444442 21 136789999999999998877654

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.45  E-value=0.0057  Score=40.84  Aligned_cols=43  Identities=14%  Similarity=0.126  Sum_probs=31.1

Q ss_pred             CcccCCCCCH-----hhHHHHh---cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY---KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~---~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||.|+...     ++...+.   .. ..+.+||++|.|++++.+.+.+.+
T Consensus       116 v~nK~D~~~~~~v~~~~~~~~~~~~~~-~~~e~Sak~g~gv~e~f~~l~~~i  166 (169)
T d3raba_         116 VGNKCDMEDERVVSSERGRQLADHLGF-EFFEASAKDNINVKQTFERLVDVI  166 (169)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHHTC-EEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEeecccccccccchhhhHHHHHHcCC-EEEEecCCCCcCHHHHHHHHHHHH
Confidence            4699996532     3444442   22 478899999999999999888764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0053  Score=40.87  Aligned_cols=44  Identities=14%  Similarity=0.091  Sum_probs=30.7

Q ss_pred             CcccCCCCCH-----hhHHHH-hcCC--CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDII-YKIP--HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l-~~~~--~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+ ..+.  ..+.+||++|.|++++.+.+.+.+
T Consensus       114 vgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i  165 (167)
T d1c1ya_         114 VGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             EEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHh
Confidence            5799997633     222333 2222  367799999999999998887765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.011  Score=40.07  Aligned_cols=23  Identities=13%  Similarity=0.049  Sum_probs=19.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ..+.+||++|.|++++.+.+.+.
T Consensus       159 ~~~E~SAk~~~gv~e~F~~li~~  181 (185)
T d2atxa1         159 CYVECSALTQKGLKTVFDEAIIA  181 (185)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEecCCCCcCHHHHHHHHHHH
Confidence            46779999999999998776654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.00  E-value=0.004  Score=39.98  Aligned_cols=21  Identities=5%  Similarity=-0.018  Sum_probs=18.4

Q ss_pred             eEEEeecCCcChHHHHHHHHH
Q psy2927          22 CVPLSAHHKWNFDDLLEKMWE   42 (123)
Q Consensus        22 ~v~ISA~~~~gld~L~e~i~~   42 (123)
                      ++++||++|+|++++++.+.+
T Consensus       145 ~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         145 VFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEBTTTTBSHHHHHHHHTT
T ss_pred             EEEeeCCCCCCHHHHHHHHhC
Confidence            688999999999999987754

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.96  E-value=0.0042  Score=43.72  Aligned_cols=45  Identities=18%  Similarity=0.172  Sum_probs=30.4

Q ss_pred             CcccCCCCCH-hhHHH----H----h--cC----CCeEEEeecCC----------cChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-EELDI----I----Y--KI----PHCVPLSAHHK----------WNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-e~l~~----l----~--~~----~~~v~ISA~~~----------~gld~L~e~i~~~L~   45 (123)
                      ++||+|++.. +..+.    +    .  .+    -+++++||.+|          .|+.+|+++|-+.++
T Consensus       125 ~iNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~iP  194 (196)
T d1d2ea3         125 YVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIP  194 (196)
T ss_dssp             EEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSC
T ss_pred             EEecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhhCC
Confidence            4799999853 22221    1    1  12    24799999998          488999999877654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.91  E-value=0.0075  Score=40.11  Aligned_cols=46  Identities=20%  Similarity=0.091  Sum_probs=31.9

Q ss_pred             CcccCCCCCH--------hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhhcc
Q psy2927           1 MQKVSDQISI--------EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYLKL   46 (123)
Q Consensus         1 V~NKiD~~~~--------e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L~~   46 (123)
                      |.||+|+.+.        ++...+. . .-..+.+||++|.|++++.+.|.+.|++
T Consensus       114 v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i~~  169 (170)
T d1ek0a_         114 VGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIPL  169 (170)
T ss_dssp             EEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTSCC
T ss_pred             eecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHhcc
Confidence            4689986422        3333332 1 1247889999999999999998887754

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.90  E-value=0.012  Score=40.02  Aligned_cols=24  Identities=13%  Similarity=0.086  Sum_probs=19.7

Q ss_pred             CeEEEeecCCcChHHHHHHHHHhh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      ..+.+||++|.|++++.+.+...+
T Consensus       153 ~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         153 KYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCcCHHHHHHHHHHHH
Confidence            478899999999999987766543

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.76  E-value=0.007  Score=40.42  Aligned_cols=45  Identities=13%  Similarity=0.090  Sum_probs=30.5

Q ss_pred             CcccCCCCC-----HhhHHHHh-cC-CCeEEEeecCCc-ChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQIS-----IEELDIIY-KI-PHCVPLSAHHKW-NFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l~-~~-~~~v~ISA~~~~-gld~L~e~i~~~L~   45 (123)
                      |.||+|+..     .++...++ ++ -..+.+||++|. |++++.+.+.+.+.
T Consensus       112 vgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~  164 (168)
T d2atva1         112 VGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVR  164 (168)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHH
T ss_pred             eccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHH
Confidence            579999753     34444442 21 136789999998 59998887777653

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.73  E-value=0.0084  Score=39.98  Aligned_cols=44  Identities=11%  Similarity=-0.077  Sum_probs=29.3

Q ss_pred             CcccCCCCCH-----hhHHHHh-cCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KIP-HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~~-~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     +....+. ... ..+.+||++|.|++++.+.+.+.+
T Consensus       116 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i  166 (174)
T d2bmea1         116 CGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKI  166 (174)
T ss_dssp             EEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHH
Confidence            5799997532     2223332 222 468899999999999887766553

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.71  E-value=0.017  Score=39.40  Aligned_cols=45  Identities=16%  Similarity=0.034  Sum_probs=31.1

Q ss_pred             CcccCCCCCH-----hhHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhhc
Q psy2927           1 MQKVSDQISI-----EELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYLK   45 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L~   45 (123)
                      |.||+|+...     ++...+.  .....+.+||++|.|++++.+.+.+.+.
T Consensus       117 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~  168 (194)
T d2bcgy1         117 VGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIK  168 (194)
T ss_dssp             EEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHH
Confidence            5799998753     2222221  2235788999999999998887776553

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.54  E-value=0.018  Score=38.20  Aligned_cols=44  Identities=16%  Similarity=0.047  Sum_probs=31.6

Q ss_pred             CcccCCCCCH-----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. . .-..+.+||++|.|+++|.+.+.+.|
T Consensus       118 v~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i  168 (170)
T d2g6ba1         118 LGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL  168 (170)
T ss_dssp             EEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHc
Confidence            4689997643     3333332 1 22588999999999999999888765

>d1vjka_ d.15.3.1 (A:) Molybdopterin synthase subunit MoaD {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: MoaD
domain: Molybdopterin synthase subunit MoaD
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.53  E-value=0.033  Score=33.79  Aligned_cols=55  Identities=16%  Similarity=0.250  Sum_probs=35.6

Q ss_pred             cccEEEeCCCCCHHHHHHHhHHHHH---hhc--------ceeEEecCCCCCCCceeCCCceecCCCeEEEEe
Q psy2927          61 QSPVVLHTDRRSIEDFCNKLHRTIA---KEF--------KYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVK  121 (123)
Q Consensus        61 ~~~~~l~~g~~tv~d~a~~IH~d~~---~~f--------~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~  121 (123)
                      +..+-++.| +|+.|+-..+-....   +..        .+..+     -..+..++.|+.|+|||.|-|+-
T Consensus        20 ~~~~~~~~~-~Tv~~l~~~L~~~~~~~~~~l~~~~~~~~~~i~i-----avN~~~~~~d~~L~~gDevai~P   85 (88)
T d1vjka_          20 EEEIELPEG-ARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNI-----AVNGRYVSWDEELKDGDVVGVFP   85 (88)
T ss_dssp             EEEEEECTT-CBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEE-----EETTBCCCTTCBCCTTCEEEEES
T ss_pred             eEEEECCCC-CCHHHHHHHHHHHChHHHHHhhhccccccccEEE-----EEcceEcCCCcCcCCCCEEEEeC
Confidence            446778887 999999766643322   211        01111     11456688999999999999863

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.02  Score=38.34  Aligned_cols=44  Identities=16%  Similarity=-0.010  Sum_probs=29.9

Q ss_pred             CcccCCCCCH----hhHHHH-hcCC-CeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI----EELDII-YKIP-HCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~----e~l~~l-~~~~-~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      +.||.|....    ++...+ .... ..+.+||.+|.|++++.+.+.+.|
T Consensus       119 ~~nk~d~~~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l  168 (177)
T d1x3sa1         119 VGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKI  168 (177)
T ss_dssp             EEECTTSSSCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EeeccccccccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            4699996632    233333 2222 478899999999999988776654

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.10  E-value=0.034  Score=36.90  Aligned_cols=44  Identities=14%  Similarity=0.141  Sum_probs=30.1

Q ss_pred             CcccCCCCCH-----hhHHHHh-cC-CCeEEEeecCCc-ChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISI-----EELDIIY-KI-PHCVPLSAHHKW-NFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~-----e~l~~l~-~~-~~~v~ISA~~~~-gld~L~e~i~~~L   44 (123)
                      |.||+|+...     ++...+. +. -..+.+||+++. |++++.+.+.+.+
T Consensus       115 vgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i  166 (169)
T d1x1ra1         115 VANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI  166 (169)
T ss_dssp             EEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHH
T ss_pred             EecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHH
Confidence            4799997643     4444442 21 257889999875 9999888777654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=94.09  E-value=0.015  Score=42.32  Aligned_cols=47  Identities=6%  Similarity=0.040  Sum_probs=35.3

Q ss_pred             CcccCCCCCHhhHHHH-h----cCCCeEEEeecCCcChHHHHHHHHHhhccc
Q psy2927           1 MQKVSDQISIEELDII-Y----KIPHCVPLSAHHKWNFDDLLEKMWEYLKLT   47 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l-~----~~~~~v~ISA~~~~gld~L~e~i~~~L~~i   47 (123)
                      |+||+|+++.+..+.. .    .....+++||.++.|...+.+.+.+.+...
T Consensus        48 VlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~   99 (273)
T d1puja_          48 LLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK   99 (273)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             EEECccCCchHHHHHHHHHHHhcCCccceeecccCCCccccchhhhhhhhhh
Confidence            6899999987754433 1    334689999999999988888777766543

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.02  E-value=0.021  Score=37.37  Aligned_cols=40  Identities=10%  Similarity=-0.001  Sum_probs=25.6

Q ss_pred             CcccCCCCC-----HhhHHHHh-cC-CCeEEEeecCC---cChHHHHHHH
Q psy2927           1 MQKVSDQIS-----IEELDIIY-KI-PHCVPLSAHHK---WNFDDLLEKM   40 (123)
Q Consensus         1 V~NKiD~~~-----~e~l~~l~-~~-~~~v~ISA~~~---~gld~L~e~i   40 (123)
                      |.||+|+..     .++.+.+. .+ -..+.+||+++   .|++++.+.|
T Consensus       115 vgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         115 VGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             EEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHH
T ss_pred             EeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHh
Confidence            579999753     34445552 22 25788999874   5777776554

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.69  E-value=0.0028  Score=46.38  Aligned_cols=39  Identities=10%  Similarity=0.038  Sum_probs=26.5

Q ss_pred             CcccCCCCCHhh----HHHH-h---c-CCCeEEEeecCCcChHHHHHH
Q psy2927           1 MQKVSDQISIEE----LDII-Y---K-IPHCVPLSAHHKWNFDDLLEK   39 (123)
Q Consensus         1 V~NKiD~~~~e~----l~~l-~---~-~~~~v~ISA~~~~gld~L~e~   39 (123)
                      |+||+|+++.++    +..+ .   . --+++.+||.++.|+++|.+.
T Consensus        47 vlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~   94 (231)
T d1t9ha2          47 CITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPH   94 (231)
T ss_dssp             EEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGG
T ss_pred             EEecccccccHHHHHHHHHHHHHHhhccccceeeecCChhHHHHHHHh
Confidence            689999986543    2222 1   1 125899999999999876553

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.41  E-value=0.019  Score=38.65  Aligned_cols=23  Identities=9%  Similarity=0.125  Sum_probs=19.0

Q ss_pred             CeEEEeecCCcChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      ..+.+||++|.|+++|.+.+-+.
T Consensus       155 ~~~E~SAk~~~~V~e~F~~l~~~  177 (183)
T d1mh1a_         155 KYLECSALTQRGLKTVFDEAIRA  177 (183)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHH
T ss_pred             eEEEcCCCCCcCHHHHHHHHHHH
Confidence            36779999999999998777654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.29  E-value=0.041  Score=36.49  Aligned_cols=44  Identities=9%  Similarity=-0.023  Sum_probs=25.6

Q ss_pred             CcccCCCCCHh-----hHHHHh--cCCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           1 MQKVSDQISIE-----ELDIIY--KIPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         1 V~NKiD~~~~e-----~l~~l~--~~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      |.||.|+....     +.....  ..-..+.+||.+|.|++++.+.+.+.|
T Consensus       117 v~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i  167 (173)
T d2fu5c1         117 LGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDI  167 (173)
T ss_dssp             EEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHH
T ss_pred             EEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            46999977431     222221  222478899999999999998887765

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.03  E-value=0.083  Score=34.50  Aligned_cols=43  Identities=12%  Similarity=0.082  Sum_probs=29.7

Q ss_pred             cccCCCCCH----hhHHHHh-c-CCCeEEEeecCCcChHHHHHHHHHhh
Q psy2927           2 QKVSDQISI----EELDIIY-K-IPHCVPLSAHHKWNFDDLLEKMWEYL   44 (123)
Q Consensus         2 ~NKiD~~~~----e~l~~l~-~-~~~~v~ISA~~~~gld~L~e~i~~~L   44 (123)
                      .||.|+...    ++...+. . .-..+.+||++++|++++.+.+.+.+
T Consensus       114 ~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i  162 (166)
T d1g16a_         114 GNKSDMETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLI  162 (166)
T ss_dssp             EECTTCTTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             cchhhhhhhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHH
Confidence            567775532    3344442 1 22589999999999999998887765

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.90  E-value=0.041  Score=36.98  Aligned_cols=23  Identities=13%  Similarity=-0.002  Sum_probs=17.5

Q ss_pred             CeEEEeecCCc-ChHHHHHHHHHh
Q psy2927          21 HCVPLSAHHKW-NFDDLLEKMWEY   43 (123)
Q Consensus        21 ~~v~ISA~~~~-gld~L~e~i~~~   43 (123)
                      ..+.+||++|. |++++.+.+-..
T Consensus       152 ~y~E~SAk~~~n~i~~~F~~~~~~  175 (179)
T d1m7ba_         152 TYIECSALQSENSVRDIFHVATLA  175 (179)
T ss_dssp             EEEECBTTTBHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCcCHHHHHHHHHHH
Confidence            46779999998 599988766553

>d1xo3a_ d.15.3.3 (A:) C9orf74 homolog {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: C9orf74 homolog
domain: C9orf74 homolog
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.19  E-value=0.14  Score=32.00  Aligned_cols=52  Identities=17%  Similarity=0.222  Sum_probs=30.2

Q ss_pred             CCHHHHHHHhHHHHHhhcceeEEecCCCC------CCCc----eeCCCceecCCCeEEEEec
Q psy2927          71 RSIEDFCNKLHRTIAKEFKYALVWGSSVK------HQPQ----KVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        71 ~tv~d~a~~IH~d~~~~f~~A~vwg~s~k------~~~q----~vg~~~~l~d~Dvv~i~~~  122 (123)
                      +||.|+...+-+....-+......+...+      ..++    .-|.++.|+|||.|.|++.
T Consensus        36 ~TV~dll~~L~~~~p~~~~~l~~~~~~lr~~v~v~vN~~di~~l~gl~t~l~dgDeV~~~p~   97 (101)
T d1xo3a_          36 WDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWELLGELDYQLQDQDSILFIST   97 (101)
T ss_dssp             CCHHHHHHHHHHHHCCSCGGGSCCTTSCCSSEEEEETTEEHHHHTTTSCCCCTTCEEEEEET
T ss_pred             cCHHHHHHHHHHhCCcchhhhhccCcCeeeeEEEEEcCcceeccCCCccCcCCCCEEEEeCC
Confidence            78888876665544433222221111111      1222    2378999999999999863

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=91.10  E-value=0.024  Score=40.88  Aligned_cols=18  Identities=28%  Similarity=0.386  Sum_probs=14.9

Q ss_pred             CeEEEeecCCcChHHHHH
Q psy2927          21 HCVPLSAHHKWNFDDLLE   38 (123)
Q Consensus        21 ~~v~ISA~~~~gld~L~e   38 (123)
                      ..|||||.+|+|+.+|++
T Consensus       208 ~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         208 KYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             EEEECBTTTTBTTSSCCC
T ss_pred             EEEEeeccCCCCcccchh
Confidence            379999999999977544

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=90.84  E-value=0.0044  Score=45.82  Aligned_cols=85  Identities=15%  Similarity=0.133  Sum_probs=47.6

Q ss_pred             CcccCCCCCHhhHHHHh-----cCCCeEEEeecCCcChHHHHHHH--------HHhhccceEEeCCCCCCCCCcccEEEe
Q psy2927           1 MQKVSDQISIEELDIIY-----KIPHCVPLSAHHKWNFDDLLEKM--------WEYLKLTRIYTKPKGQLPDYQSPVVLH   67 (123)
Q Consensus         1 V~NKiD~~~~e~l~~l~-----~~~~~v~ISA~~~~gld~L~e~i--------~~~L~~irvytk~~g~~pd~~~~~~l~   67 (123)
                      ++||.|....+.++++.     ....++++||..+..+.++.+.-        .+.-.+.+++.+.++..++..++++.+
T Consensus       220 v~Nk~d~~~~e~~~~~~~~~~~~~~~vi~~sa~~E~~L~~~~~~~~i~~~~~~~~~~~l~~l~~~~~~~l~~i~e~~L~~  299 (319)
T d1wxqa1         220 AANKADAASDEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDR  299 (319)
T ss_dssp             EEECGGGSCHHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSS
T ss_pred             hcccccchhhHHHHHHHHHHhhcCCEEEEecHHHHHHHHHhHHHHHHHHhcccchhhhhHHHhHHHHHHHHHHHHHhhhh
Confidence            57999977766665541     22347889998876665543211        111223345666666666666677778


Q ss_pred             CCCCCHHHHHHHhHHHHH
Q psy2927          68 TDRRSIEDFCNKLHRTIA   85 (123)
Q Consensus        68 ~g~~tv~d~a~~IH~d~~   85 (123)
                      .+++.+.++|+++|.++.
T Consensus       300 ~~ttGv~ev~~~~~f~~l  317 (319)
T d1wxqa1         300 FGSTGVQEVINRVVFDLL  317 (319)
T ss_dssp             SSSCSHHHHHHHHHHTTS
T ss_pred             ccCcCHHHHHHHHHHHHh
Confidence            873448999999998764

>d1zud21 d.15.3.2 (2:2-66) Thiamin biosynthesis sulfur carrier protein ThiS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: MoaD/ThiS
family: ThiS
domain: Thiamin biosynthesis sulfur carrier protein ThiS
species: Escherichia coli [TaxId: 562]

Probab=89.39  E-value=0.11  Score=30.13  Aligned_cols=55  Identities=13%  Similarity=0.230  Sum_probs=34.9

Q ss_pred             ccEEEeCCCCCHHHHHHHhHHHHHhhcceeEEecCCCCCCCceeCCCceecCCCeEEEEec
Q psy2927          62 SPVVLHTDRRSIEDFCNKLHRTIAKEFKYALVWGSSVKHQPQKVGKEHVLNDEDVVQIVKK  122 (123)
Q Consensus        62 ~~~~l~~g~~tv~d~a~~IH~d~~~~f~~A~vwg~s~k~~~q~vg~~~~l~d~Dvv~i~~~  122 (123)
                      ++.-++.+ .|+.|+....  .+..+. .|..-  +..+-++.-=.++.|++||.|+|++-
T Consensus         7 ~~~~~~~~-~tl~~ll~~l--~~~~~~-vaV~v--N~~ivpk~~~~~~~L~~gD~ieIv~~   61 (65)
T d1zud21           7 QAMQCAAG-QTVHELLEQL--DQRQAG-AALAI--NQQIVPREQWAQHIVQDGDQILLFQV   61 (65)
T ss_dssp             EEECCCTT-CBHHHHHHHH--TCCCTT-EEEEE--TTEECCGGGTTTCBCCTTCEEEEEEC
T ss_pred             EEEEcCCC-CcHHHHHHHc--CCCCCc-EEEEE--CCEEcCHHHHhhccCCCCCEEEEEEE
Confidence            46777887 8999998543  232222 23211  33334444456899999999999863

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.34  E-value=0.079  Score=37.56  Aligned_cols=14  Identities=36%  Similarity=0.316  Sum_probs=11.9

Q ss_pred             eEEEeecCCcChHH
Q psy2927          22 CVPLSAHHKWNFDD   35 (123)
Q Consensus        22 ~v~ISA~~~~gld~   35 (123)
                      .|||||.+|.|+.+
T Consensus       185 ~IPiSA~~G~ni~~  198 (222)
T d1zunb3         185 FVPMSALKGDNVVN  198 (222)
T ss_dssp             EEECCTTTCTTTSS
T ss_pred             EEEEEcccCccCCc
Confidence            58999999999843

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.85  E-value=0.3  Score=32.51  Aligned_cols=22  Identities=14%  Similarity=0.114  Sum_probs=17.8

Q ss_pred             eEEEeecCCcChHHHHHHHHHh
Q psy2927          22 CVPLSAHHKWNFDDLLEKMWEY   43 (123)
Q Consensus        22 ~v~ISA~~~~gld~L~e~i~~~   43 (123)
                      .+.+||+++.|++++.+.+.+.
T Consensus       143 ~~e~SAk~~~~v~~~F~~l~~~  164 (175)
T d2bmja1         143 YYETCATYGLNVDRVFQEVAQK  164 (175)
T ss_dssp             EEEEBTTTTBTHHHHHHHHHHH
T ss_pred             EEEeCCCCCcCHHHHHHHHHHH
Confidence            5779999999999987666554

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.33  E-value=0.36  Score=33.22  Aligned_cols=10  Identities=10%  Similarity=0.076  Sum_probs=7.7

Q ss_pred             CcccCCCCCH
Q psy2927           1 MQKVSDQISI   10 (123)
Q Consensus         1 V~NKiD~~~~   10 (123)
                      ++||+|+++.
T Consensus       126 ~iNK~D~~~~  135 (204)
T d2c78a3         126 FMNKVDMVDD  135 (204)
T ss_dssp             EEECGGGCCC
T ss_pred             EEEecccCCC
Confidence            3799999853