Psyllid ID: psy2938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110---
Protein Sequence
MKKKASKAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL
Secondary Structure (PSIPRED)
ccccccHHHHccccccccccHHHHHHccccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccccccccccccHHHHcEEEccccccccccccHHHHHHHHHHHccHHHHHHHHHcccccEcccccHcHHHHHHHHHcccHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
MKKKASKAIqtfdvgryqpshCQAALNQEGnieykahtkthktfktSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERgadvnkgkl
Flexible Loop (DISEMBL)
mkkkaskaiqtfdvgryqpSHCQAALNQEGNIEYKAHTkthktfktsnILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERgadvnkgkl
Low Complexity Region (SEG)
MKKKASKAIQTFDVGRYQPSHCQAALNQEGNIEYkahtkthktfktSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL
Disordered region (IsUnstruct)
***********FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER*********
Disordered Region (DISOPRED)
***********FDV**YQ*****************************NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG**
Disordered Region (DISEMBL)
MKKKASKAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL
Disordered Region (DISPRO)
*K**ASKAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKKASKAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	113	2.2.26 [Sep-21-2011]
Q9ULT8	2610	E3 ubiquitin-protein liga	yes	N/A	0.548	0.023	0.870	1e-27
Q69ZR2	2618	E3 ubiquitin-protein liga	yes	N/A	0.548	0.023	0.857	4e-26
P40480	1083	Protein HOS4 OS=Saccharom	yes	N/A	0.495	0.051	0.421	0.0004

>sp|Q9ULT8|HECD1_HUMAN E3 ubiquitin-protein ligase HECTD1 OS=Homo sapiens GN=HECTD1 PE=1 SV=3

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct: 365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query: 111 GK 112
           G+
Sbjct: 425 GQ 426

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. May be required for development of the head mesenchyme and neural tube closure.
Homo sapiens (taxid: 9606)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q69ZR2|HECD1_MOUSE E3 ubiquitin-protein ligase HECTD1 OS=Mus musculus GN=Hectd1 PE=1 SV=2

 Score =  116 bits (291), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/63 (85%), Positives = 59/63 (93%), Gaps = 1/63 (1%)

Query: 51  QLIECIRSKDTDALIETIDSGGV-EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           QLI+CIRSKDTDALI+ ID+G   EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct: 365 QLIDCIRSKDTDALIDAIDTGAAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 424

Query: 110 KGK 112
           +G+
Sbjct: 425 RGQ 427

Probable E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Involved in development of the head mesenchyme and neural tube closure.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P40480|HOS4_YEAST Protein HOS4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOS4 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 53  IECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           I C + K  D + + I+ GG ++N  D+ G T L+ A+  G  E+VE L E GADVN
Sbjct: 336 IACDKGK-YDVVKKMIEEGGYDINDQDNAGNTALHEAALQGHIEIVELLIENGADVN 391

Unknown. Component of the Set3C complex, which is required to repress early/middle sporulation genes during meiosis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
307197829	2600	E3 ubiquitin-protein ligase HECTD1 [Harp	0.548	0.023	0.919	9e-28
307166390	2551	E3 ubiquitin-protein ligase HECTD1 [Camp	0.548	0.024	0.903	2e-27
189236840	2609	PREDICTED: similar to hect E3 ubiquitin	0.548	0.023	0.903	3e-27
270005044	2552	hypothetical protein TcasGA2_TC007046 [T	0.548	0.024	0.903	3e-27
242008012	2686	hect E3 ubiquitin ligase, putative [Pedi	0.548	0.023	0.903	5e-27
380021584	2537	PREDICTED: LOW QUALITY PROTEIN: E3 ubiqu	0.548	0.024	0.903	5e-27
328787841	2494	PREDICTED: e3 ubiquitin-protein ligase H	0.548	0.024	0.903	5e-27
383847577	2534	PREDICTED: E3 ubiquitin-protein ligase H	0.548	0.024	0.903	5e-27
340712868	2541	PREDICTED: LOW QUALITY PROTEIN: e3 ubiqu	0.548	0.024	0.903	5e-27
350419570	2495	PREDICTED: E3 ubiquitin-protein ligase H	0.548	0.024	0.903	5e-27

>gi|307197829|gb|EFN78940.1| E3 ubiquitin-protein ligase HECTD1 [Harpegnathos saltator]

 Score =  127 bits (319), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 57/62 (91%), Positives = 61/62 (98%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE IDSGG+EVNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVNK
Sbjct: 359 QLIDCIRSKDTDALIEAIDSGGIEVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVNK 418

Query: 111 GK 112
           G+
Sbjct: 419 GQ 420

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307166390|gb|EFN60527.1| E3 ubiquitin-protein ligase HECTD1 [Camponotus floridanus]

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/62 (90%), Positives = 61/62 (98%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE ID+GG+EVNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVNK
Sbjct: 371 QLIDCIRSKDTDALIEAIDTGGIEVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVNK 430

Query: 111 GK 112
           G+
Sbjct: 431 GQ 432

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189236840|ref|XP_001813187.1| PREDICTED: similar to hect E3 ubiquitin ligase [Tribolium castaneum]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 61/62 (98%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE I+SGGVEVNFMDDVGQTLLNWASAFGTQEMVE+LC+RGADVNK
Sbjct: 373 QLIDCIRSKDTDALIEAIESGGVEVNFMDDVGQTLLNWASAFGTQEMVEYLCDRGADVNK 432

Query: 111 GK 112
           G+
Sbjct: 433 GQ 434

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005044|gb|EFA01492.1| hypothetical protein TcasGA2_TC007046 [Tribolium castaneum]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 61/62 (98%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE I+SGGVEVNFMDDVGQTLLNWASAFGTQEMVE+LC+RGADVNK
Sbjct: 370 QLIDCIRSKDTDALIEAIESGGVEVNFMDDVGQTLLNWASAFGTQEMVEYLCDRGADVNK 429

Query: 111 GK 112
           G+
Sbjct: 430 GQ 431

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242008012|ref|XP_002424807.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis] gi|212508345|gb|EEB12069.1| hect E3 ubiquitin ligase, putative [Pediculus humanus corporis]

 Score =  125 bits (313), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDAL+E ID+ GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK
Sbjct: 363 QLIDCIRSKDTDALVEAIDNAGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 422

Query: 111 GK 112
           G+
Sbjct: 423 GQ 424

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380021584|ref|XP_003694642.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HECTD1-like [Apis florea]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE IDSGG+ VNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVNK
Sbjct: 371 QLIDCIRSKDTDALIEAIDSGGIGVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVNK 430

Query: 111 GK 112
           G+
Sbjct: 431 GQ 432

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787841|ref|XP_001122009.2| PREDICTED: e3 ubiquitin-protein ligase HECTD1-like [Apis mellifera]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE IDSGG+ VNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVNK
Sbjct: 371 QLIDCIRSKDTDALIEAIDSGGIGVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVNK 430

Query: 111 GK 112
           G+
Sbjct: 431 GQ 432

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383847577|ref|XP_003699429.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1 [Megachile rotundata]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE IDSGG+ VNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVNK
Sbjct: 371 QLIDCIRSKDTDALIEAIDSGGIGVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVNK 430

Query: 111 GK 112
           G+
Sbjct: 431 GQ 432

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340712868|ref|XP_003394975.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase HECTD1-like [Bombus terrestris]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE IDSGG+ VNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVNK
Sbjct: 371 QLIDCIRSKDTDALIEAIDSGGIGVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVNK 430

Query: 111 GK 112
           G+
Sbjct: 431 GQ 432

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419570|ref|XP_003492229.1| PREDICTED: E3 ubiquitin-protein ligase HECTD1-like [Bombus impatiens]

 Score =  124 bits (312), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/62 (90%), Positives = 60/62 (96%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           QLI+CIRSKDTDALIE IDSGG+ VNFMDDVGQTLLNWASAFGTQEMVEFLC+RGADVNK
Sbjct: 371 QLIDCIRSKDTDALIEAIDSGGIGVNFMDDVGQTLLNWASAFGTQEMVEFLCDRGADVNK 430

Query: 111 GK 112
           G+
Sbjct: 431 GQ 432

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	113
UNIPROTKB|G3V4V5	926	HECTD1 "E3 ubiquitin-protein l	0.548	0.066	0.870	2.8e-24
UNIPROTKB|E1C1E6	2576	HECTD1 "Uncharacterized protei	0.548	0.024	0.870	1.1e-23
ZFIN|ZDB-GENE-030616-153	2576	hectd1 "HECT domain containing	0.548	0.024	0.870	1.1e-23
UNIPROTKB|F1SHF6	2607	HECTD1 "Uncharacterized protei	0.548	0.023	0.870	1.2e-23
UNIPROTKB|E2RGH9	2609	HECTD1 "Uncharacterized protei	0.548	0.023	0.870	1.2e-23
UNIPROTKB|E1C040	2610	HECTD1 "Uncharacterized protei	0.548	0.023	0.870	1.2e-23
UNIPROTKB|E1BLD1	2610	HECTD1 "Uncharacterized protei	0.548	0.023	0.870	1.2e-23
UNIPROTKB|Q9ULT8	2610	HECTD1 "E3 ubiquitin-protein l	0.548	0.023	0.870	1.2e-23
RGD|1561653	2610	Hectd1 "HECT domain containing	0.548	0.023	0.870	1.2e-23
MGI|MGI:2384768	2618	Hectd1 "HECT domain containing	0.548	0.023	0.857	8.3e-23

UNIPROTKB|G3V4V5 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 2.8e-24, P = 2.8e-24
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query:   111 GK 112
             G+
Sbjct:   425 GQ 426

GO:0001843 "neural tube closure" evidence=IEA

UNIPROTKB|E1C1E6 HECTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query:   111 GK 112
             G+
Sbjct:   425 GQ 426

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

ZFIN|ZDB-GENE-030616-153 hectd1 "HECT domain containing 1" [Danio rerio (taxid:7955)]

 Score = 289 (106.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query:   111 GK 112
             G+
Sbjct:   425 GQ 426

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0016740 "transferase activity" evidence=IEA

UNIPROTKB|F1SHF6 HECTD1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 289 (106.8 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query:   111 GK 112
             G+
Sbjct:   425 GQ 426

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E2RGH9 HECTD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 289 (106.8 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   364 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 423

Query:   111 GK 112
             G+
Sbjct:   424 GQ 425

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|E1C040 HECTD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query:   111 GK 112
             G+
Sbjct:   425 GQ 426

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

UNIPROTKB|E1BLD1 HECTD1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query:   111 GK 112
             G+
Sbjct:   425 GQ 426

GO:0001843 "neural tube closure" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9ULT8 HECTD1 "E3 ubiquitin-protein ligase HECTD1" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query:   111 GK 112
             G+
Sbjct:   425 GQ 426

GO:0046872 "metal ion binding" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

RGD|1561653 Hectd1 "HECT domain containing E3 ubiquitin protein ligase 1" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 54/62 (87%), Positives = 59/62 (95%)

Query:    51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             QLI+CIRSKDTDALI+ ID+G  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN+
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNR 424

Query:   111 GK 112
             G+
Sbjct:   425 GQ 426

GO:0001843 "neural tube closure" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:2384768 Hectd1 "HECT domain containing 1" [Mus musculus (taxid:10090)]

 Score = 281 (104.0 bits), Expect = 8.3e-23, P = 8.3e-23
 Identities = 54/63 (85%), Positives = 59/63 (93%)

Query:    51 QLIECIRSKDTDALIETIDSGGV-EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             QLI+CIRSKDTDALI+ ID+G   EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN
Sbjct:   365 QLIDCIRSKDTDALIDAIDTGAAFEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 424

Query:   110 KGK 112
             +G+
Sbjct:   425 RGQ 427

GO:0001843 "neural tube closure" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IBA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0006464 "cellular protein modification process" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=IBA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q69ZR2	HECD1_MOUSE	6, ., 3, ., 2, ., -	0.8571	0.5486	0.0236	yes	N/A
Q9ULT8	HECD1_HUMAN	6, ., 3, ., 2, ., -	0.8709	0.5486	0.0237	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	113
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	6e-06
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	4e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	9e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	2e-04
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.001
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	0.002
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.004

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 6e-06
 Identities = 17/38 (44%), Positives = 23/38 (60%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           G +VN  D  G T L+ A+  G  E+V+ L E GAD+N
Sbjct: 51  GADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADIN 88

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 40.1 bits (94), Expect = 2e-05
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 52  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           L     +   + +++ +   G +VN  D+ G+T L+ A+  G  E+V+ L E+GADVN 
Sbjct: 11  LHLAASNGHLE-VVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNA 68

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 4e-05
 Identities = 14/28 (50%), Positives = 18/28 (64%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVN 109
           G T L+ A+  G  E+V+ L E GADVN
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 36.5 bits (85), Expect = 9e-05
 Identities = 13/28 (46%), Positives = 18/28 (64%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVN 109
           G T L+ A+  G  E+V+ L E GAD+N
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 38.9 bits (91), Expect = 2e-04
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 17/86 (19%)

Query: 24  AALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQ 83
           AA +  GN    +   T  + K S +L L+                  G+ +N  +  GQ
Sbjct: 216 AATDMLGNTPLHS-MATGSSCKRSLVLPLLI----------------AGISINARNRYGQ 258

Query: 84  TLLNWASAFGTQEMVEFLCERGADVN 109
           T L++A+ F        L   GAD+N
Sbjct: 259 TPLHYAAVFNNPRACRRLIALGADIN 284

Length = 471

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 16/38 (42%), Positives = 23/38 (60%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           G +VN  D  G T L+ A+  G  ++V+ L + GADVN
Sbjct: 63  GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVN 100

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 11/88 (12%)

Query: 32  IEYKAHTKTHKTFKT-----SNI----LQLIECIRSKDTDALIETIDSGGVEVNFMDDVG 82
           +E    +K   T K      SNI    L L++ IR++D +  +   D+G   VN +DD  
Sbjct: 215 LECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAG-FSVNSIDDCK 273

Query: 83  QTLLNWAS-AFGTQEMVEFLCERGADVN 109
            T L+ AS A     +V  L ERGADVN
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVN 301

Length = 682

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 3/58 (5%)

Query: 52  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           L    ++ + + +   ++ G  +VN  D    T L+ A+  G  E+V+ L E GADVN
Sbjct: 1   LHLAAKNGNLELVKLLLEKG-ADVNLGDT--DTALHLAARNGNLEIVKLLLEHGADVN 55

Length = 91

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 35.0 bits (80), Expect = 0.004
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 42  KTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL 101
           K  ++   ++LI+    +D   + E +  GG +VN  D    T +++A+  G  +MV  L
Sbjct: 138 KINESIEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLL 197

Query: 102 CERGADVN 109
              GADVN
Sbjct: 198 LSYGADVN 205

Length = 682

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	113
KOG4412|consensus	226		99.87
KOG0502|consensus	296		99.8
KOG4412|consensus	226		99.78
PHA02743	166	Viral ankyrin protein; Provisional	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.76
PHA02791	284	ankyrin-like protein; Provisional	99.75
PHA02791	284	ankyrin-like protein; Provisional	99.75
PHA02875	413	ankyrin repeat protein; Provisional	99.73
KOG0509|consensus	600		99.72
PHA02878	477	ankyrin repeat protein; Provisional	99.71
PHA03100	480	ankyrin repeat protein; Provisional	99.7
KOG0195|consensus	448		99.7
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.7
PHA02741	169	hypothetical protein; Provisional	99.69
PHA02736	154	Viral ankyrin protein; Provisional	99.69
PHA02874	434	ankyrin repeat protein; Provisional	99.69
PHA02859	209	ankyrin repeat protein; Provisional	99.68
PHA02859	209	ankyrin repeat protein; Provisional	99.68
PHA03100	480	ankyrin repeat protein; Provisional	99.67
PHA02798	489	ankyrin-like protein; Provisional	99.66
PHA02884	300	ankyrin repeat protein; Provisional	99.66
PHA03095	471	ankyrin-like protein; Provisional	99.66
PHA02876	682	ankyrin repeat protein; Provisional	99.65
PHA02875	413	ankyrin repeat protein; Provisional	99.64
PHA02878	477	ankyrin repeat protein; Provisional	99.64
KOG0508|consensus	615		99.63
PHA02795	437	ankyrin-like protein; Provisional	99.63
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.63
KOG4177|consensus	1143		99.63
PHA02946	446	ankyin-like protein; Provisional	99.62
PHA03095	471	ankyrin-like protein; Provisional	99.62
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.62
PHA02736	154	Viral ankyrin protein; Provisional	99.62
PHA02795	437	ankyrin-like protein; Provisional	99.61
KOG0512|consensus	228		99.61
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.61
PHA02876	682	ankyrin repeat protein; Provisional	99.6
PHA02743	166	Viral ankyrin protein; Provisional	99.6
PHA02741	169	hypothetical protein; Provisional	99.6
PHA02874	434	ankyrin repeat protein; Provisional	99.6
KOG0509|consensus	600		99.6
PHA02730	672	ankyrin-like protein; Provisional	99.57
PHA02917	661	ankyrin-like protein; Provisional	99.56
PHA02946	446	ankyin-like protein; Provisional	99.56
PHA02989	494	ankyrin repeat protein; Provisional	99.55
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
PHA02798	489	ankyrin-like protein; Provisional	99.55
PHA02989	494	ankyrin repeat protein; Provisional	99.53
KOG0514|consensus	452		99.51
KOG0510|consensus	929		99.5
KOG0508|consensus	615		99.49
PF13606	30	Ank_3: Ankyrin repeat	99.49
KOG0505|consensus	527		99.49
KOG4214|consensus	117		99.49
PHA02792	631	ankyrin-like protein; Provisional	99.48
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.48
PHA02917	661	ankyrin-like protein; Provisional	99.47
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.47
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.47
PHA02884	300	ankyrin repeat protein; Provisional	99.46
PHA02730	672	ankyrin-like protein; Provisional	99.43
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.42
KOG0515|consensus	752		99.42
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.41
KOG4177|consensus	1143		99.4
KOG0502|consensus	296		99.4
KOG0512|consensus	228		99.39
KOG0507|consensus	854		99.37
PHA02792	631	ankyrin-like protein; Provisional	99.36
KOG0510|consensus	929		99.36
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.35
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.35
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.26
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.23
KOG0195|consensus	448		99.23
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.23
KOG1710|consensus	396		99.19
KOG0505|consensus	527		99.17
KOG0514|consensus	452		99.13
KOG3676|consensus	782		99.11
KOG4214|consensus	117		99.1
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.07
KOG3676|consensus	782		99.05
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.05
KOG0783|consensus	1267		99.0
KOG0705|consensus	749		98.86
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.84
KOG0507|consensus	854		98.74
KOG0818|consensus	669		98.71
KOG0511|consensus	516		98.7
KOG1710|consensus	396		98.61
KOG0506|consensus	622		98.57
KOG0515|consensus	752		98.56
KOG4369|consensus	2131		98.49
KOG4369|consensus	2131		98.47
KOG0506|consensus	622		98.44
KOG0818|consensus	669		98.44
KOG0520|consensus	975		98.4
KOG0521|consensus	785		98.39
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	98.36
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.19
KOG0522|consensus	560		98.18
PF13606	30	Ank_3: Ankyrin repeat	98.17
KOG3609|consensus	822		98.13
KOG0522|consensus	560		97.98
KOG0782|consensus	1004		97.98
KOG2384|consensus	223		97.95
KOG2505|consensus	591		97.8
KOG2384|consensus	223		97.78
KOG0783|consensus	1267		97.76
KOG2505|consensus	591		97.75
KOG0782|consensus	1004		97.6
KOG0705|consensus	749		97.6
KOG0521|consensus	785		97.17
KOG3609|consensus	822		95.43
KOG0511|consensus	516		94.65
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.09
KOG0520|consensus	975		94.0
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	91.65
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	82.65

>KOG4412|consensus

Probab=99.87  E-value=9e-23  Score=118.23  Aligned_cols=103  Identities=19%  Similarity=0.250  Sum_probs=91.7

Q ss_pred             hccccCCCchhHHHHHhhccCccccccc-cccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAH-TKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      +-.|..||||+|+++-.+....|..+.. .+.+.+..+.++.+++|+|+.++..+++++|+.+|+.++.+|++|.||||.
T Consensus        66 ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHR  145 (226)
T KOG4412|consen   66 DDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHR  145 (226)
T ss_pred             CCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHH
Confidence            4468899999999988777666666654 488888888999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..|+.+++++|+..|+.+|..|
T Consensus       146 AAavGklkvie~Li~~~a~~n~qD  169 (226)
T KOG4412|consen  146 AAAVGKLKVIEYLISQGAPLNTQD  169 (226)
T ss_pred             HHhccchhhHHHHHhcCCCCCccc
Confidence            999999999999999999999876

>KOG0502|consensus

Probab=99.80  E-value=6.6e-20  Score=109.45  Aligned_cols=105  Identities=19%  Similarity=0.149  Sum_probs=95.2

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      -++..|..|+||++|++..++-..+.++.+.|.+....-....+.+..+..+++.+++++|+.++.|+|..|++|.|||.
T Consensus       152 ~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLl  231 (296)
T KOG0502|consen  152 KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLL  231 (296)
T ss_pred             cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceee
Confidence            45677999999999999888888888888888777777788888999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ||++.||.+|++.|+..|++++..+
T Consensus       232 yAvrgnhvkcve~Ll~sGAd~t~e~  256 (296)
T KOG0502|consen  232 YAVRGNHVKCVESLLNSGADVTQED  256 (296)
T ss_pred             eeecCChHHHHHHHHhcCCCccccc
Confidence            9999999999999999999988643

>KOG4412|consensus

Probab=99.78  E-value=4.5e-20  Score=107.12  Aligned_cols=104  Identities=17%  Similarity=0.248  Sum_probs=82.0

Q ss_pred             hhhcccc-CCCchhHHHHHhhccCcccccc-ccccchhc-cccchHHHHHHHHhCCHHHHHHHHHhC-CCCccccCCCCC
Q psy2938           8 AIQTFDV-GRYQPSHCQAALNQEGNIEYKA-HTKTHKTF-KTSNILQLIECIRSKDTDALIETIDSG-GVEVNFMDDVGQ   83 (113)
Q Consensus         8 ~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~d~~g~   83 (113)
                      .++.++. +|.||+|+++-.++...+.++. ...+..+- .+.++++++.++..++. ++++-|+.+ |+++|..+..|.
T Consensus        29 SL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~-evVk~Ll~r~~advna~tn~G~  107 (226)
T KOG4412|consen   29 SLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGND-EVVKELLNRSGADVNATTNGGQ  107 (226)
T ss_pred             hhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcH-HHHHHHhcCCCCCcceecCCCc
Confidence            3455544 9999999999888888777766 33333332 35666666666666655 577777765 999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          84 TLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        84 tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ||||||+..|..+++++|+++|+.|+++|
T Consensus       108 T~LHyAagK~r~eIaqlLle~ga~i~~kD  136 (226)
T KOG4412|consen  108 TCLHYAAGKGRLEIAQLLLEKGALIRIKD  136 (226)
T ss_pred             ceehhhhcCChhhHHHHHHhcCCCCcccc
Confidence            99999999999999999999999999987

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.77  E-value=3.3e-18  Score=100.57  Aligned_cols=105  Identities=18%  Similarity=0.153  Sum_probs=79.9

Q ss_pred             hhhccccCCCchhHHHHHhhccCc---cccccccccchhccc-cchHHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCC
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGN---IEYKAHTKTHKTFKT-SNILQLIECIRSKDTDALIETIDS-GGVEVNFMDDVG   82 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~~g   82 (113)
                      .++..|..|+||+|+++..++...   +..+...+...+.++ ..+.+++++++..+..+++++|+. .|++++.++..|
T Consensus        49 ~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  128 (166)
T PHA02743         49 LLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQH  128 (166)
T ss_pred             hhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCC
Confidence            345568899999999875544322   344445555555555 345555555555555678999984 799999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          83 QTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        83 ~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .||||+|+..++.+++++|+++|++++.++
T Consensus       129 ~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~  158 (166)
T PHA02743        129 ETAYHIAYKMRDRRMMEILRANGAVCDDPL  158 (166)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            999999999999999999999999998765

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.76  E-value=1.7e-18  Score=92.06  Aligned_cols=61  Identities=28%  Similarity=0.439  Sum_probs=52.7

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        52 ~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++++|+..+..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        29 ~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   29 ALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            5556666666789999999999999999999999999999999999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02791 ankyrin-like protein; Provisional

Probab=99.75  E-value=4.2e-18  Score=107.33  Aligned_cols=101  Identities=14%  Similarity=0.063  Sum_probs=79.5

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWA   89 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A   89 (113)
                      ...|..|.||+|+++..++...+..+...+...+..+  +.+++++|+..+..+++++|++.|++++.+|..|+||||+|
T Consensus        24 ~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~~d--~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~A  101 (284)
T PHA02791         24 FKADVHGHSALYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYA  101 (284)
T ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcCCC--CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            4578899999999887666665555554444444333  24566666666667899999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          90 SAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        90 ~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +..|+.+++++|+++|++++.++
T Consensus       102 a~~g~~eivk~Ll~~gadin~~~  124 (284)
T PHA02791        102 VDSGNMQTVKLFVKKNWRLMFYG  124 (284)
T ss_pred             HHcCCHHHHHHHHHCCCCcCccC
Confidence            99999999999999999987654

>PHA02791 ankyrin-like protein; Provisional

Probab=99.75  E-value=5.8e-18  Score=106.73  Aligned_cols=65  Identities=12%  Similarity=0.026  Sum_probs=56.1

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChH-HHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy2938          49 ILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNKGKL  113 (113)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tp-L~~A~~~~~~~~v~~Ll~~g~~~~~~d~  113 (113)
                      +.+++++|+.+++.+++++|++.|++++.+|..|.|| ||+|+..|+.+++++|+++|++++.+|.
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            3566777777777789999999999999999888876 9999999999999999999999998873

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.73  E-value=1.1e-17  Score=110.28  Aligned_cols=101  Identities=16%  Similarity=0.110  Sum_probs=75.5

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA   91 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~   91 (113)
                      .+..|.||+|+++..++...+..+...|.+.+..+..+.++++.|+..+..+++++|++.|++++.+|..|.||||+|+.
T Consensus        98 ~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~  177 (413)
T PHA02875         98 FYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA  177 (413)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            34568889888876665555555555555555555556666666666666678888888888888888889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCC
Q psy2938          92 FGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        92 ~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .|+.+++++|+++|++++..+
T Consensus       178 ~g~~eiv~~Ll~~ga~~n~~~  198 (413)
T PHA02875        178 KGDIAICKMLLDSGANIDYFG  198 (413)
T ss_pred             cCCHHHHHHHHhCCCCCCcCC
Confidence            999999999999998887643

>KOG0509|consensus

Probab=99.72  E-value=7e-18  Score=112.64  Aligned_cols=98  Identities=16%  Similarity=0.235  Sum_probs=81.1

Q ss_pred             hhhhccccCCCchhHHHHH----------hhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCcc
Q psy2938           7 KAIQTFDVGRYQPSHCQAA----------LNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVN   76 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~   76 (113)
                      +.++..|..|.+++|++++          +++|++||....         ..+.+++|+|+++++..++.+|+++|+|++
T Consensus        69 ~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG---------~l~stPLHWAar~G~~~vv~lLlqhGAdpt  139 (600)
T KOG0509|consen   69 ESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGG---------VLGSTPLHWAARNGHISVVDLLLQHGADPT  139 (600)
T ss_pred             cCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCC---------CCCCCcchHHHHcCcHHHHHHHHHcCCCCc
Confidence            4566778899999998665          667777776652         345566666666666679999999999999


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy2938          77 FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL  113 (113)
Q Consensus        77 ~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d~  113 (113)
                      .+|.+|.+|+|.|+..++.-+|-+|+..|+|++.+|.
T Consensus       140 ~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~  176 (600)
T KOG0509|consen  140 LKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDN  176 (600)
T ss_pred             eecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCC
Confidence            9999999999999999999999999999999998874

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.71  E-value=2.2e-17  Score=110.78  Aligned_cols=105  Identities=14%  Similarity=0.166  Sum_probs=76.1

Q ss_pred             hhhccccC-CCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVG-RYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      +++..+.. |.||+|+++..++-..+..+...+...+..+..+.++++.|+..+..+++++|++.|++++.+|..|.|||
T Consensus       159 din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpL  238 (477)
T PHA02878        159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPL  238 (477)
T ss_pred             CCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            34455666 89999988765554444444445555555555555666666666666788888888899988888899999


Q ss_pred             HHHHHc-CCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWASAF-GTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~-~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+|+.. ++.+++++|+++|++++.++
T Consensus       239 h~A~~~~~~~~iv~~Ll~~gadvn~~~  265 (477)
T PHA02878        239 HISVGYCKDYDILKLLLEHGVDVNAKS  265 (477)
T ss_pred             HHHHHhcCCHHHHHHHHHcCCCCCccC
Confidence            998875 68888888888888887654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.70  E-value=7.2e-17  Score=108.15  Aligned_cols=104  Identities=19%  Similarity=0.184  Sum_probs=74.0

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccch------HHHHHHHHhCCH--HHHHHHHHhCCCCccccCC
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNI------LQLIECIRSKDT--DALIETIDSGGVEVNFMDD   80 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~~~~L~~~~~~~~~~d~   80 (113)
                      ++..+..|.||+|+++..++...+..+...+......+..+      .++++.++..+.  .+++++|++.|++++.+|.
T Consensus       169 in~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~  248 (480)
T PHA03100        169 INAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDV  248 (480)
T ss_pred             cccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCC
Confidence            44556678888887765544333433333333333333333      555566665555  6788999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          81 VGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        81 ~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .|.||||+|+..++.+++++|+++|++++.+|
T Consensus       249 ~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d  280 (480)
T PHA03100        249 YGFTPLHYAVYNNNPEFVKYLLDLGANPNLVN  280 (480)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            99999999999999999999999999988765

>KOG0195|consensus

Probab=99.70  E-value=7.3e-18  Score=104.56  Aligned_cols=105  Identities=18%  Similarity=0.195  Sum_probs=90.9

Q ss_pred             hhhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      .+++.-|.-|++|+|+++.-++.+.+..+..+|..++....+..+++|.++..++.++++.|++..+|+|..+.+|+|||
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntpl  104 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCch
Confidence            35677889999999999988888888888877777777777777777777777777899999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      ||||..|.-.+++-|+..|+.++..
T Consensus       105 hyacfwgydqiaedli~~ga~v~ic  129 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGAAVNIC  129 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccceeeec
Confidence            9999999999999999999987753

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.70  E-value=4.9e-17  Score=114.90  Aligned_cols=60  Identities=27%  Similarity=0.329  Sum_probs=52.4

Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          53 IECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        53 ~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++.|+..+..+++++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++..|
T Consensus       626 L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~  685 (823)
T PLN03192        626 LCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKAN  685 (823)
T ss_pred             HHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCC
Confidence            344555555568888999999999999999999999999999999999999999998765

>PHA02741 hypothetical protein; Provisional

Probab=99.69  E-value=1.1e-16  Score=94.41  Aligned_cols=106  Identities=17%  Similarity=0.121  Sum_probs=75.0

Q ss_pred             hhhhccccCCCchhHHHHHhhccCcccccc------ccccchhccccchHHHHHHHHhCCH----HHHHHHHHhCCCCcc
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIEYKA------HTKTHKTFKTSNILQLIECIRSKDT----DALIETIDSGGVEVN   76 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~~~~~~~~   76 (113)
                      +.++..+..|.||+|+++..++...+..+.      ..+...+.++..+.+++++|+..+.    .+++++|++.|++++
T Consensus        12 ~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin   91 (169)
T PHA02741         12 EMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN   91 (169)
T ss_pred             HHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Confidence            345567788999999988766554444321      1123344445555556665555444    478888889999999


Q ss_pred             ccCC-CCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Q psy2938          77 FMDD-VGQTLLNWASAFGTQEMVEFLCE-RGADVNKGK  112 (113)
Q Consensus        77 ~~d~-~g~tpL~~A~~~~~~~~v~~Ll~-~g~~~~~~d  112 (113)
                      .++. .|+||||+|+..++.+++++|+. .|++++.+|
T Consensus        92 ~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n  129 (169)
T PHA02741         92 AQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCN  129 (169)
T ss_pred             CCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCC
Confidence            8884 89999999999999999999997 588888765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.69  E-value=9.2e-17  Score=93.31  Aligned_cols=99  Identities=12%  Similarity=0.043  Sum_probs=70.8

Q ss_pred             ccccCCCchhHHHHHhhccC---ccccccccccchhccc-cchHHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCChH
Q psy2938          11 TFDVGRYQPSHCQAALNQEG---NIEYKAHTKTHKTFKT-SNILQLIECIRSKDTDALIETIDS-GGVEVNFMDDVGQTL   85 (113)
Q Consensus        11 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~~g~tp   85 (113)
                      ..|..|.||+|+++..++..   .+..+...+...+.++ ..+.+++++|+..+..+++++|++ .|++++.+|..|.||
T Consensus        50 ~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tp  129 (154)
T PHA02736         50 EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTP  129 (154)
T ss_pred             HhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCH
Confidence            45778999998765332211   1222333344444444 245555555555556678899987 599999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Q psy2938          86 LNWASAFGTQEMVEFLCERGADVN  109 (113)
Q Consensus        86 L~~A~~~~~~~~v~~Ll~~g~~~~  109 (113)
                      ||+|+..++.+++++|+.+|++++
T Consensus       130 L~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        130 YYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999999999875

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.69  E-value=9.9e-17  Score=106.51  Aligned_cols=104  Identities=14%  Similarity=0.128  Sum_probs=85.5

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      ++..+..|.||+|+++..++...+..+...+...+.++..+.++++.|+..+..+++++|++.|++++..+..|.||||+
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~  196 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHN  196 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHH
Confidence            45567889999999887666555555556666666666666777777777777889999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..|+.+++++|++.|++++.++
T Consensus       197 A~~~g~~~iv~~Ll~~g~~i~~~~  220 (434)
T PHA02874        197 AAEYGDYACIKLLIDHGNHIMNKC  220 (434)
T ss_pred             HHHcCCHHHHHHHHhCCCCCcCCC
Confidence            999999999999999999887654

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.68  E-value=1.4e-16  Score=96.75  Aligned_cols=52  Identities=13%  Similarity=0.240  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhCCCCccccCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCCC
Q psy2938          61 TDALIETIDSGGVEVNFMDDVGQTLLNWASA--FGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        61 ~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~--~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..+++++|++.|++++.+|..|.||||+|+.  .++.+++++|++.|++++.+|
T Consensus       102 ~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d  155 (209)
T PHA02859        102 EPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKD  155 (209)
T ss_pred             cHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccc
Confidence            3455555555555555555555566555543  245555555555555555443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.68  E-value=1.8e-16  Score=96.28  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=71.0

Q ss_pred             hhccc-cCCCchhHHHHHhh---ccCccccccccccchhccccchHHHHHHH-Hh-CCHHHHHHHHHhCCCCccccCCCC
Q psy2938           9 IQTFD-VGRYQPSHCQAALN---QEGNIEYKAHTKTHKTFKTSNILQLIECI-RS-KDTDALIETIDSGGVEVNFMDDVG   82 (113)
Q Consensus         9 ~~~~~-~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~L~~~~~~~~~~d~~g   82 (113)
                      ++..+ ..|+||+|+++...   ....+..+...+..++.++..+.++++.+ +. .+..+++++|++.|++++.+|..|
T Consensus        79 vn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g  158 (209)
T PHA02859         79 VNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDN  158 (209)
T ss_pred             CCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCC
Confidence            34444 36778888654221   11122222233444444445555555544 43 356789999999999999999999


Q ss_pred             ChHHHH-HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          83 QTLLNW-ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        83 ~tpL~~-A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .||||. |+..++.+++++|+++|++++.+|
T Consensus       159 ~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d  189 (209)
T PHA02859        159 NNILYSYILFHSDKKIFDFLTSLGIDINETN  189 (209)
T ss_pred             CcHHHHHHHhcCCHHHHHHHHHcCCCCCCCC
Confidence            999995 567889999999999999999876

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.67  E-value=1.9e-16  Score=106.07  Aligned_cols=104  Identities=22%  Similarity=0.309  Sum_probs=78.5

Q ss_pred             hhccccCCCchhHHHH--HhhccCccccccccccchhccccchHHHHHHHHhCC--HHHHHHHHHhCCCCccccCCCCCh
Q psy2938           9 IQTFDVGRYQPSHCQA--ALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKD--TDALIETIDSGGVEVNFMDDVGQT   84 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~~~~~~~~~~d~~g~t   84 (113)
                      ++..+..|.||+|+++  ..++...+..+...+......+..+.+++++|...+  ..+++++|++.|++++.+|..|.|
T Consensus        99 i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~t  178 (480)
T PHA03100         99 VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYT  178 (480)
T ss_pred             CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCC
Confidence            4566777888888888  444444444444444444444555666666666666  778999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          85 LLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        85 pL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |||+|+..|+.+++++|+++|++++..+
T Consensus       179 pL~~A~~~~~~~iv~~Ll~~ga~~~~~~  206 (480)
T PHA03100        179 PLHIAVEKGNIDVIKFLLDNGADINAGD  206 (480)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCccCCC
Confidence            9999999999999999999999887653

>PHA02798 ankyrin-like protein; Provisional

Probab=99.66  E-value=9.2e-16  Score=103.27  Aligned_cols=94  Identities=19%  Similarity=0.288  Sum_probs=70.3

Q ss_pred             hhhccccCCCchhHHHH---------------HhhccCccccccccccchhccccchHHHHHHHHhC---CHHHHHHHHH
Q psy2938           8 AIQTFDVGRYQPSHCQA---------------ALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSK---DTDALIETID   69 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~   69 (113)
                      +++..+..|.||+|+++               |+.+|++++..          +..+.++++++..+   +..+++++|+
T Consensus        63 dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~----------d~~G~TpLh~a~~~~~~~~~~iv~~Ll  132 (489)
T PHA02798         63 NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKK----------NSDGETPLYCLLSNGYINNLEILLFMI  132 (489)
T ss_pred             CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCC----------CCCcCcHHHHHHHcCCcChHHHHHHHH
Confidence            45566778888887643               23445555444          44445555555543   4678999999


Q ss_pred             hCCCCccccCCCCChHHHHHHHcCC---HHHHHHHHHcCCCCCCC
Q psy2938          70 SGGVEVNFMDDVGQTLLNWASAFGT---QEMVEFLCERGADVNKG  111 (113)
Q Consensus        70 ~~~~~~~~~d~~g~tpL~~A~~~~~---~~~v~~Ll~~g~~~~~~  111 (113)
                      +.|++++.+|..|.||||+|+..++   .+++++|+++|++++.+
T Consensus       133 ~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~  177 (489)
T PHA02798        133 ENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTH  177 (489)
T ss_pred             HcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccc
Confidence            9999999999999999999999887   89999999999998765

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.66  E-value=5.1e-16  Score=98.32  Aligned_cols=104  Identities=15%  Similarity=0.058  Sum_probs=73.8

Q ss_pred             hhccccCCCchhHHHHHh-hccCccccccccccchhcc----ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCC
Q psy2938           9 IQTFDVGRYQPSHCQAAL-NQEGNIEYKAHTKTHKTFK----TSNILQLIECIRSKDTDALIETIDSGGVEVNFMD-DVG   82 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d-~~g   82 (113)
                      ++..|..+++++++++.. ++-..+..+...|.+.+.+    +..+.+++++|+..+..+++++|++.|++++.++ ..|
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g  104 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAK  104 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCC
Confidence            455677888876654432 2222233333333333332    2345556666666666789999999999999864 689


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          83 QTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        83 ~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .||||+|+..++.+++++|+++|++++.+|
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd  134 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQT  134 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            999999999999999999999999999875

>PHA03095 ankyrin-like protein; Provisional

Probab=99.66  E-value=3e-16  Score=104.89  Aligned_cols=105  Identities=17%  Similarity=0.108  Sum_probs=76.0

Q ss_pred             hhhccccCCCchhHHHHHhh---ccCccccccccccchhccccchHHHHHHHHhCC-HHHHHHHHHhCCCCccccCCCCC
Q psy2938           8 AIQTFDVGRYQPSHCQAALN---QEGNIEYKAHTKTHKTFKTSNILQLIECIRSKD-TDALIETIDSGGVEVNFMDDVGQ   83 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~d~~g~   83 (113)
                      +++..+..|.||+|+++..+   ....+..+...|.+.+.++..+.+++++|+..+ ..+++++|++.|++++.+|..|.
T Consensus        39 ~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~  118 (471)
T PHA03095         39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGR  118 (471)
T ss_pred             CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCC
Confidence            45667778899998877555   323333444455555554545555555555444 67899999999999999999999


Q ss_pred             hHHHHHH--HcCCHHHHHHHHHcCCCCCCCC
Q psy2938          84 TLLNWAS--AFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        84 tpL~~A~--~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ||||+|+  ..++.+++++|+++|++++.+|
T Consensus       119 tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d  149 (471)
T PHA03095        119 TPLHVYLSGFNINPKVIRLLLRKGADVNALD  149 (471)
T ss_pred             CHHHHHhhCCcCCHHHHHHHHHcCCCCCccC
Confidence            9999999  5568899999999999988765

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.65  E-value=4.5e-16  Score=108.24  Aligned_cols=104  Identities=20%  Similarity=0.138  Sum_probs=73.2

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccc-cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKT-SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      ++..|..|.||+|+++..++...+..+...+......+ .+.++++.+++.++...++++|++.|++++.+|..|+||||
T Consensus       368 in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh  447 (682)
T PHA02876        368 VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLH  447 (682)
T ss_pred             CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHH
Confidence            34456667777776654333333333333333333223 33455555556677777889999999999999999999999


Q ss_pred             HHHHcC-CHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFG-TQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~-~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..+ +.+++++|++.|++++.+|
T Consensus       448 ~Aa~~~~~~~iv~lLl~~Gad~n~~d  473 (682)
T PHA02876        448 YACKKNCKLDVIEMLLDNGADVNAIN  473 (682)
T ss_pred             HHHHhCCcHHHHHHHHHCCCCCCCCC
Confidence            999876 6899999999999999876

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.64  E-value=5.6e-16  Score=102.28  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=84.0

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCC-ChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVG-QTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g-~tpL   86 (113)
                      +.+..+..|.||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++.|++++..+..| .||+
T Consensus       127 d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l  206 (413)
T PHA02875        127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAAL  206 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHH
Confidence            445667789999999887666666666666666666566667677777777777789999999999999998766 5899


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      |+|+..++.+++++|+++|+|++..
T Consensus       207 ~~A~~~~~~~iv~~Ll~~gad~n~~  231 (413)
T PHA02875        207 CYAIENNKIDIVRLFIKRGADCNIM  231 (413)
T ss_pred             HHHHHcCCHHHHHHHHHCCcCcchH
Confidence            9999999999999999999999853

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.64  E-value=6e-16  Score=103.85  Aligned_cols=104  Identities=15%  Similarity=0.130  Sum_probs=81.7

Q ss_pred             hhhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHH-hCCHHHHHHHHHhCCCCccccCC-CCCh
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIR-SKDTDALIETIDSGGVEVNFMDD-VGQT   84 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~~~~~~~~d~-~g~t   84 (113)
                      .+++..|..|.||+|+++..++...+..+...+...+.++..+.+++++|+ .++..+++++|++.|++++.++. .|.|
T Consensus       192 ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~T  271 (477)
T PHA02878        192 ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLT  271 (477)
T ss_pred             CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCC
Confidence            345677889999999988666555555555556655555666666666555 45677899999999999999885 8999


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          85 LLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        85 pL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |||+|  .++.+++++|+++|+|++..|
T Consensus       272 pLh~A--~~~~~~v~~Ll~~gadin~~d  297 (477)
T PHA02878        272 ALHSS--IKSERKLKLLLEYGADINSLN  297 (477)
T ss_pred             HHHHH--ccCHHHHHHHHHCCCCCCCcC
Confidence            99999  567899999999999999875

>KOG0508|consensus

Probab=99.63  E-value=9.9e-17  Score=104.73  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=81.7

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      |+-....|-+|+.++.--+|-..|..+.+.+..++-.+..+++++.+|+..++.+++++|+.+|+|++..|..|.|.||+
T Consensus        77 FDge~IegappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmI  156 (615)
T KOG0508|consen   77 FDGETIEGAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMI  156 (615)
T ss_pred             eCCcccCCCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEe
Confidence            33344566677776665556555655555555555556778888888888888889999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ||..|+.+++++|++.|+|+|.++
T Consensus       157 a~ykGh~~I~qyLle~gADvn~ks  180 (615)
T KOG0508|consen  157 ACYKGHVDIAQYLLEQGADVNAKS  180 (615)
T ss_pred             eeccCchHHHHHHHHhCCCcchhc
Confidence            999999999999999999998765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.63  E-value=1.3e-15  Score=100.26  Aligned_cols=63  Identities=24%  Similarity=0.167  Sum_probs=57.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          50 LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .++.+.+..++..+++++|++.|+++|.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       189 ~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d  251 (437)
T PHA02795        189 YTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVM  251 (437)
T ss_pred             cchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            355666777888899999999999999999999999999999999999999999999999876

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.63  E-value=1.1e-15  Score=74.06  Aligned_cols=52  Identities=21%  Similarity=0.373  Sum_probs=40.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q psy2938          51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC  102 (113)
Q Consensus        51 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  102 (113)
                      +++++++..+..+++++|++.|++++.+|.+|+||||+|+..|+.+++++|+
T Consensus         3 t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    3 TPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             BHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            4556666666677999999999999999999999999999999999999986

...

>KOG4177|consensus

Probab=99.63  E-value=7.8e-16  Score=109.63  Aligned_cols=75  Identities=24%  Similarity=0.317  Sum_probs=65.1

Q ss_pred             ccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy2938          39 KTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL  113 (113)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d~  113 (113)
                      +.....++..+.++++.|+..+...+|++|+++|++++.+++.|+||||.|+..|+.+|+.+|+++|+++|+.|.
T Consensus       530 ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~  604 (1143)
T KOG4177|consen  530 GANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADL  604 (1143)
T ss_pred             CCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccc
Confidence            555555666667777777777777899999999999999999999999999999999999999999999998763

>PHA02946 ankyin-like protein; Provisional

Probab=99.62  E-value=1e-15  Score=102.02  Aligned_cols=16  Identities=19%  Similarity=0.104  Sum_probs=8.7

Q ss_pred             hhccccCCCchhHHHH
Q psy2938           9 IQTFDVGRYQPSHCQA   24 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~   24 (113)
                      ++..|..|+||+|+++
T Consensus        65 vn~~d~~G~TpLh~Aa   80 (446)
T PHA02946         65 PNETDDDGNYPLHIAS   80 (446)
T ss_pred             CCccCCCCCCHHHHHH
Confidence            3445555666666543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.62  E-value=7.8e-16  Score=102.94  Aligned_cols=63  Identities=10%  Similarity=0.028  Sum_probs=35.9

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV  108 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~  108 (113)
                      +..+.+++++|+..+..+++++|++.|++++.+|..|.||||+|+..|+.++++.|++.++++
T Consensus       254 d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        254 NRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            333444444444444445666666666666666666666666666666666666666655554

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.62  E-value=1e-15  Score=106.48  Aligned_cols=55  Identities=20%  Similarity=0.302  Sum_probs=42.6

Q ss_pred             hCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH--cCCHHHHHHHHHcCCCCCCCC
Q psy2938          58 SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA--FGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        58 ~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~--~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..+..+++++|++.|++++.+|..|+||||+|+.  .++.+++++|+++|++++.+|
T Consensus       293 ~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD  349 (764)
T PHA02716        293 RNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPD  349 (764)
T ss_pred             HcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCC
Confidence            3344567888888888888888888888888764  457888888888888888765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.62  E-value=3.3e-16  Score=91.00  Aligned_cols=104  Identities=13%  Similarity=0.096  Sum_probs=72.4

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccc-----cccchhccccchHHHHHHHHhCCHH---HHHHHHHhCCCCccccC-
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAH-----TKTHKTFKTSNILQLIECIRSKDTD---ALIETIDSGGVEVNFMD-   79 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~~~~~~~~~~d-   79 (113)
                      .+..|..|.||+|+++..++...+-....     .+......+..+.+++++++..+..   +++++|++.|++++.++ 
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            45578899999999997665221111000     0111112244455555555554433   56889999999999998 


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Q psy2938          80 DVGQTLLNWASAFGTQEMVEFLCE-RGADVNKGK  112 (113)
Q Consensus        80 ~~g~tpL~~A~~~~~~~~v~~Ll~-~g~~~~~~d  112 (113)
                      ..|.||||+|+..++.+++++|+. .|++++.+|
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~  123 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILN  123 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcccc
Confidence            599999999999999999999997 599988765

>PHA02795 ankyrin-like protein; Provisional

Probab=99.61  E-value=1e-15  Score=100.77  Aligned_cols=79  Identities=16%  Similarity=0.086  Sum_probs=64.8

Q ss_pred             HHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcC--------C
Q psy2938          23 QAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG--------T   94 (113)
Q Consensus        23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~--------~   94 (113)
                      ..|+.+|++++..          +..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|+..|        +
T Consensus       205 e~LIs~GADIN~k----------D~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~  274 (437)
T PHA02795        205 KLCIPYIEDINQL----------DAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETH  274 (437)
T ss_pred             HHHHhCcCCcCcC----------CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccH
Confidence            4455666666554          455666777777777778999999999999999999999999999998        4


Q ss_pred             HHHHHHHHHcCCCCCCC
Q psy2938          95 QEMVEFLCERGADVNKG  111 (113)
Q Consensus        95 ~~~v~~Ll~~g~~~~~~  111 (113)
                      .+++++|+++|++++..
T Consensus       275 ~eIvelLL~~gadI~~~  291 (437)
T PHA02795        275 LKILEILLREPLSIDCI  291 (437)
T ss_pred             HHHHHHHHhCCCCCCch
Confidence            69999999999998864

>KOG0512|consensus

Probab=99.61  E-value=1.2e-15  Score=88.48  Aligned_cols=75  Identities=17%  Similarity=0.177  Sum_probs=67.2

Q ss_pred             cccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          38 TKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.+++.++..+.+++|-|+++++..++..|+..|++.+.+...||||||-||..++.+++.+|+.+|+|+|+..
T Consensus        86 ~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t  160 (228)
T KOG0512|consen   86 KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQT  160 (228)
T ss_pred             ccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCcccccc
Confidence            344566678888999999999999999999999999999999999999999999999999999999999999753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.61  E-value=6.4e-15  Score=102.58  Aligned_cols=104  Identities=11%  Similarity=0.063  Sum_probs=62.7

Q ss_pred             hhcc-ccCCCchhHHHHHhhc--cCccccccccccchhccccc-hHHHHHHHHhCC-HHHHHHHHHhCCCCccccCCCCC
Q psy2938           9 IQTF-DVGRYQPSHCQAALNQ--EGNIEYKAHTKTHKTFKTSN-ILQLIECIRSKD-TDALIETIDSGGVEVNFMDDVGQ   83 (113)
Q Consensus         9 ~~~~-~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~L~~~~~~~~~~d~~g~   83 (113)
                      ++.. +..|.||+|++.-...  ...+.++.+.|..++.++.. .++++.|+..++ ..+++++|++.|++++.+|..|+
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~  248 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGM  248 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            4444 6678888886431110  01222222233333333333 444444444443 35788888888888888888888


Q ss_pred             hHHHHH-------------------------------------HHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          84 TLLNWA-------------------------------------SAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        84 tpL~~A-------------------------------------~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ||||+|                                     +..|+.+++++|+++|++++.+|
T Consensus       249 TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD  314 (764)
T PHA02716        249 SPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKD  314 (764)
T ss_pred             CHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccC
Confidence            888865                                     33467788888888888887665

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.60  E-value=8.1e-15  Score=102.06  Aligned_cols=103  Identities=17%  Similarity=0.119  Sum_probs=65.7

Q ss_pred             hccccCCCchhHHHHHhhc-cCccccccccccchhcccc-chHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQ-EGNIEYKAHTKTHKTFKTS-NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +..|..|.||+|+++..+. ...+..+...+...+..+. +.++++.++..++...++++|+..|++++.+|..|.||||
T Consensus       301 n~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh  380 (682)
T PHA02876        301 NAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIH  380 (682)
T ss_pred             CCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHH
Confidence            3345556666665554331 1111111122222222233 3445555555567777888888889999988888999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..++.+++++|+++|++++..+
T Consensus       381 ~Aa~~~~~~iv~~Ll~~gad~~~~~  405 (682)
T PHA02876        381 YAAVRNNVVIINTLLDYGADIEALS  405 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCccccC
Confidence            9999999999888888888887643

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.60  E-value=3e-15  Score=88.03  Aligned_cols=101  Identities=17%  Similarity=0.153  Sum_probs=70.6

Q ss_pred             cccCCCchhHHHHHhhccCcc----ccccccccchhccccchHHHHHHHHhCCHH---HHHHHHHhCCCCccccC-CCCC
Q psy2938          12 FDVGRYQPSHCQAALNQEGNI----EYKAHTKTHKTFKTSNILQLIECIRSKDTD---ALIETIDSGGVEVNFMD-DVGQ   83 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~~~~~~~~~~d-~~g~   83 (113)
                      .+..+.+++|.++..+.-..+    ..+...+...+..+..+.+++++|+..+..   .++++|++.|++++.+| ..|.
T Consensus        16 ~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~   95 (166)
T PHA02743         16 IDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGN   95 (166)
T ss_pred             hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            455666777776654432111    122233333444455566666666655433   35889999999999998 5899


Q ss_pred             hHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Q psy2938          84 TLLNWASAFGTQEMVEFLCE-RGADVNKGK  112 (113)
Q Consensus        84 tpL~~A~~~~~~~~v~~Ll~-~g~~~~~~d  112 (113)
                      ||||+|+..++.+++++|++ .|++++.+|
T Consensus        96 TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  125 (166)
T PHA02743         96 TLLHIAASTKNYELAEWLCRQLGVNLGAIN  125 (166)
T ss_pred             cHHHHHHHhCCHHHHHHHHhccCCCccCcC
Confidence            99999999999999999995 799988765

>PHA02741 hypothetical protein; Provisional

Probab=99.60  E-value=2.2e-15  Score=88.85  Aligned_cols=101  Identities=14%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             hhhhccccCCCchhHHHHHhhcc----Cccccccccccchhcccc-chHHHHHHHHhCCHHHHHHHHHh-CCCCccccCC
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQE----GNIEYKAHTKTHKTFKTS-NILQLIECIRSKDTDALIETIDS-GGVEVNFMDD   80 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~   80 (113)
                      ..++..|..|+||+|+++..++.    ..+..+...+...+.++. .+.+++++|+..+..+++++|+. .|++++..|.
T Consensus        51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            45677899999999998865552    223333344455554442 45566666666666679999996 5999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy2938          81 VGQTLLNWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        81 ~g~tpL~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      .|+||||+|+..++.+++++|++.++.
T Consensus       131 ~g~tpL~~A~~~~~~~iv~~L~~~~~~  157 (169)
T PHA02741        131 DNKSPFELAIDNEDVAMMQILREIVAT  157 (169)
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence            999999999999999999999987654

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.60  E-value=4.1e-15  Score=98.85  Aligned_cols=71  Identities=21%  Similarity=0.248  Sum_probs=59.5

Q ss_pred             hhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          42 KTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ...++..+.+++++|+..+..+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.+|
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~  187 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD  187 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCC
Confidence            33445556677777777777789999999999999999999999999999999999999999999887654

>KOG0509|consensus

Probab=99.60  E-value=1.4e-15  Score=101.80  Aligned_cols=105  Identities=21%  Similarity=0.231  Sum_probs=69.3

Q ss_pred             hhhccc-cCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFD-VGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      +++.++ ..+-||+|+|+..++-..+..+.+.|.+.+..+..+-+++|.|++.++..++-+|+..+++++.+|..|+|||
T Consensus       103 dvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpL  182 (600)
T KOG0509|consen  103 DVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPL  182 (600)
T ss_pred             CccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHH
Confidence            344554 5677888887766655555555555555555555555666666665555666677777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |||+..|....++.|++-|++++.+|
T Consensus       183 mwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  183 MWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             HHHHHhcccHHHHHHHHhcccccccc
Confidence            77777777666777777777766554

>PHA02730 ankyrin-like protein; Provisional

Probab=99.57  E-value=7.8e-15  Score=100.74  Aligned_cols=99  Identities=16%  Similarity=0.157  Sum_probs=70.0

Q ss_pred             cCCCchhHHHHHhhc----cCcccccccccc--chhccccchHHHHH---HHHhCC---------HHHHHHHHHhCCCCc
Q psy2938          14 VGRYQPSHCQAALNQ----EGNIEYKAHTKT--HKTFKTSNILQLIE---CIRSKD---------TDALIETIDSGGVEV   75 (113)
Q Consensus        14 ~~~~~~~~~~~l~~~----~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~~~~~---------~~~~~~~L~~~~~~~   75 (113)
                      ..|+||+|+++....    ...++.+...|.  ..+..+..+.++++   ++...+         ..+++++|++.|+++
T Consensus       376 ~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADI  455 (672)
T PHA02730        376 TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDI  455 (672)
T ss_pred             CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccch
Confidence            578999997764432    233333333332  23333444444444   233221         235689999999999


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          76 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        76 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +.+|..|.||||+|+..++.+++++|+++|++++.+|
T Consensus       456 NakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d  492 (672)
T PHA02730        456 DMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTS  492 (672)
T ss_pred             hccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence            9999999999999999999999999999999999876

>PHA02917 ankyrin-like protein; Provisional

Probab=99.56  E-value=1.2e-14  Score=100.60  Aligned_cols=62  Identities=11%  Similarity=0.116  Sum_probs=53.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHH--HcCCHHHHHHHHHcCCCCCCCC
Q psy2938          51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS--AFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        51 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +++++++.++..+++++|++.|++++.+|..|+||||+++  ..|+.+++++|+++|++++.+|
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d  168 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYED  168 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccc
Confidence            5566777787889999999999999999999999999654  5789999999999999998543

>PHA02946 ankyin-like protein; Provisional

Probab=99.56  E-value=3.2e-14  Score=94.94  Aligned_cols=72  Identities=15%  Similarity=0.174  Sum_probs=58.1

Q ss_pred             ccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcC--CHHHHHHHHHcCCCCCC
Q psy2938          39 KTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG--TQEMVEFLCERGADVNK  110 (113)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~g~~~~~  110 (113)
                      +..++.++..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|+..+  ..+++++|+++|++++.
T Consensus        62 Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~  135 (446)
T PHA02946         62 GYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINN  135 (446)
T ss_pred             cCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCccc
Confidence            3333334455666666677666778999999999999999999999999999876  48999999999999884

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.55  E-value=1.4e-14  Score=97.65  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=30.5

Q ss_pred             CCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          73 VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        73 ~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++++.+|..|+||||+|+..++.+++++|+++|+|++.+|
T Consensus       247 advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d  286 (494)
T PHA02989        247 IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVS  286 (494)
T ss_pred             CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccC
Confidence            4455556668888888888888888888888888887765

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=5.8e-15  Score=71.94  Aligned_cols=44  Identities=39%  Similarity=0.635  Sum_probs=21.1

Q ss_pred             HhCC-CCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          69 DSGG-VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        69 ~~~~-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++.| ++++.+|..|.||||+|+..|+.+++++|++.|++++.+|
T Consensus         2 L~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d   46 (56)
T PF13857_consen    2 LEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKD   46 (56)
T ss_dssp             ----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---
T ss_pred             CccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCc
Confidence            3444 7777777777777777777777777777777777777665

>PHA02798 ankyrin-like protein; Provisional

Probab=99.55  E-value=4.7e-14  Score=95.11  Aligned_cols=86  Identities=19%  Similarity=0.209  Sum_probs=67.0

Q ss_pred             chhHHHHHhhccCccccccccccchhccccchHHHHHHHH----hCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcC
Q psy2938          18 QPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIR----SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG   93 (113)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~   93 (113)
                      .+-.++.|+.+|++++..+         ..+.++++.++.    ..+..+++++|++.|+++|.+|..|.||||+|+..+
T Consensus        50 ~~~iv~~Ll~~Gadvn~~d---------~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~~d~~G~TpLh~a~~~~  120 (489)
T PHA02798         50 STDIVKLFINLGANVNGLD---------NEYSTPLCTILSNIKDYKHMLDIVKILIENGADINKKNSDGETPLYCLLSNG  120 (489)
T ss_pred             CHHHHHHHHHCCCCCCCCC---------CCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCCCCCCcCcHHHHHHHcC
Confidence            4455677777888877665         333444444332    135678999999999999999999999999999875


Q ss_pred             ---CHHHHHHHHHcCCCCCCCC
Q psy2938          94 ---TQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        94 ---~~~~v~~Ll~~g~~~~~~d  112 (113)
                         +.+++++|+++|++++.+|
T Consensus       121 ~~~~~~iv~~Ll~~Gadvn~~d  142 (489)
T PHA02798        121 YINNLEILLFMIENGADTTLLD  142 (489)
T ss_pred             CcChHHHHHHHHHcCCCccccC
Confidence               7899999999999999875

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.53  E-value=2.6e-14  Score=96.42  Aligned_cols=50  Identities=18%  Similarity=0.248  Sum_probs=24.4

Q ss_pred             HHHHHHHHhCCCCccc-cCCCCChHHHHHHHcC----CHHHHHHHHHcCCCCCCC
Q psy2938          62 DALIETIDSGGVEVNF-MDDVGQTLLNWASAFG----TQEMVEFLCERGADVNKG  111 (113)
Q Consensus        62 ~~~~~~L~~~~~~~~~-~d~~g~tpL~~A~~~~----~~~~v~~Ll~~g~~~~~~  111 (113)
                      .+++++|++.|++++. .+..|.||||+|+..+    +.+++++|++.|++++.+
T Consensus       160 ~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~  214 (494)
T PHA02989        160 KDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETN  214 (494)
T ss_pred             HHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcccc
Confidence            3455555555555554 3444555555544332    455555555555554443

>KOG0514|consensus

Probab=99.51  E-value=8.3e-14  Score=88.74  Aligned_cols=103  Identities=17%  Similarity=0.251  Sum_probs=68.3

Q ss_pred             hhccccCCCchhHHHHHhhcc--Ccccccc---c-cccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCC
Q psy2938           9 IQTFDVGRYQPSHCQAALNQE--GNIEYKA---H-TKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVG   82 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~--~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g   82 (113)
                      ++..+.-|+||.|.++|-...  .++....   + ..++.-...-+++.++.++..|+ ..+++.|+.+|+|+|.+|.+|
T Consensus       295 VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr-~d~vk~LLacgAdVNiQDdDG  373 (452)
T KOG0514|consen  295 VDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGR-VDMVKALLACGADVNIQDDDG  373 (452)
T ss_pred             ccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCc-HHHHHHHHHccCCCccccCCc
Confidence            445677788888887763322  2221111   0 01111112334455555555554 469999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHc-CCCCCCCC
Q psy2938          83 QTLLNWASAFGTQEMVEFLCER-GADVNKGK  112 (113)
Q Consensus        83 ~tpL~~A~~~~~~~~v~~Ll~~-g~~~~~~d  112 (113)
                      .|+|+.|+.+||+|++++|+.. +.|+...|
T Consensus       374 STALMCA~EHGhkEivklLLA~p~cd~sLtD  404 (452)
T KOG0514|consen  374 STALMCAAEHGHKEIVKLLLAVPSCDISLTD  404 (452)
T ss_pred             cHHHhhhhhhChHHHHHHHhccCcccceeec
Confidence            9999999999999999999964 55655443

>KOG0510|consensus

Probab=99.50  E-value=3e-14  Score=98.02  Aligned_cols=104  Identities=20%  Similarity=0.239  Sum_probs=79.3

Q ss_pred             hhccccCCCchhHHHHH----------hhccCccccccc---cccchhc----------------------cccchHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAA----------LNQEGNIEYKAH---TKTHKTF----------------------KTSNILQLI   53 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l----------~~~~~~~~~~~~---~~~~~~~----------------------~~~~~~~~~   53 (113)
                      ++..|.+|.||+|+++.          ++.|++++.++.   +.++.++                      .+-.+.+++
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpL  345 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPL  345 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCch
Confidence            45678889999988654          567777776652   2222222                      234456677


Q ss_pred             HHHHhCCHHHHHHHHHhCCCCcc---ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          54 ECIRSKDTDALIETIDSGGVEVN---FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        54 ~~~~~~~~~~~~~~L~~~~~~~~---~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |.+++.++..++++|++.|++..   ..|.+|.||||.|+.+|+..+|++|+.+|+++..+|
T Consensus       346 Hlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n  407 (929)
T KOG0510|consen  346 HLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKN  407 (929)
T ss_pred             hhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecc
Confidence            77778888899999999999988   348999999999999999999999999999986543

>KOG0508|consensus

Probab=99.49  E-value=7.7e-15  Score=96.08  Aligned_cols=102  Identities=14%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++.....+-||+-.++.=++-..+.++...+.+..+.+..+.++++.++++++.+++++|++.|+|+|.++..|+|+||
T Consensus       109 ~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH  188 (615)
T KOG0508|consen  109 SVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALH  188 (615)
T ss_pred             ccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHH
Confidence            34444555567877666545555555555555555556677889999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVN  109 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~  109 (113)
                      .|+..|+.+++++|+++|+.+.
T Consensus       189 ~caEsG~vdivq~Ll~~ga~i~  210 (615)
T KOG0508|consen  189 DCAESGSVDIVQLLLKHGAKID  210 (615)
T ss_pred             hhhhcccHHHHHHHHhCCceee
Confidence            9999999999999999998654

>PF13606 Ank_3: Ankyrin repeat

Probab=99.49  E-value=5.8e-14  Score=59.72  Aligned_cols=30  Identities=47%  Similarity=0.661  Sum_probs=28.4

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy2938          81 VGQTLLNWASAFGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        81 ~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~  110 (113)
                      +|+||||+|+..|+.+++++|+++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999984

>KOG0505|consensus

Probab=99.49  E-value=1.6e-14  Score=95.33  Aligned_cols=64  Identities=23%  Similarity=0.304  Sum_probs=59.3

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          48 NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      .+.+.+|+++.+++.++.++|+..|.+++.+|.+||||||.|+..|+.+.+++|+++|++.+.+
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~  260 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAK  260 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchh
Confidence            3677888888889999999999999999999999999999999999999999999999998764

>KOG4214|consensus

Probab=99.49  E-value=7e-14  Score=73.34  Aligned_cols=64  Identities=22%  Similarity=0.150  Sum_probs=58.2

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN  109 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~  109 (113)
                      ..+++.++++++-.+..++.+||++-|++++.+|++|-|||..|+..||.+||++|++.|+|-.
T Consensus        31 ~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt   94 (117)
T KOG4214|consen   31 IYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRT   94 (117)
T ss_pred             HhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccc
Confidence            3467788888888888889999999999999999999999999999999999999999999854

>PHA02792 ankyrin-like protein; Provisional

Probab=99.48  E-value=2.7e-13  Score=92.63  Aligned_cols=87  Identities=16%  Similarity=0.182  Sum_probs=67.0

Q ss_pred             chhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCH---HHHHHHHHhCCCCccccCCCCChHHHHHHHcCC
Q psy2938          18 QPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDT---DALIETIDSGGVEVNFMDDVGQTLLNWASAFGT   94 (113)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~   94 (113)
                      .+-.++.|+++|++++..+..        ....++++++..++.   .+++++|++.|+++|.+|..|.||||+|+..++
T Consensus       351 n~eIVelLIs~GADIN~kD~~--------g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n  422 (631)
T PHA02792        351 DPKVVEYILKNGNVVVEDDDN--------IINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHS  422 (631)
T ss_pred             CHHHHHHHHHcCCchhhhcCC--------CCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCC
Confidence            344567778888888776521        112344444554443   346788899999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCC
Q psy2938          95 QEMVEFLCERGADVNKGK  112 (113)
Q Consensus        95 ~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+++++|+++|++++.+|
T Consensus       423 ~eivelLLs~GADIN~kD  440 (631)
T PHA02792        423 VSLVEWLIDNGADINITT  440 (631)
T ss_pred             HHHHHHHHHCCCCCCCcC
Confidence            999999999999999876

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.48  E-value=1.2e-13  Score=97.92  Aligned_cols=96  Identities=16%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             CchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHH------
Q psy2938          17 YQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS------   90 (113)
Q Consensus        17 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~------   90 (113)
                      .++++.++..++-..+..+...+.+.+..+..+.+++|.|+..++.+++++|++.|++++.+|.+|+||||+|+      
T Consensus       526 ~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~  605 (823)
T PLN03192        526 ASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHK  605 (823)
T ss_pred             hhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHH
Confidence            34444444333333333333333334444455555566666666666777777777777777777777776554      


Q ss_pred             -------------------------HcCCHHHHHHHHHcCCCCCCCC
Q psy2938          91 -------------------------AFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        91 -------------------------~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                                               ..|+.+++++|+++|+++|.+|
T Consensus       606 iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d  652 (823)
T PLN03192        606 IFRILYHFASISDPHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSED  652 (823)
T ss_pred             HHHHHHhcCcccCcccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence                                     4555556666777777777665

>PHA02917 ankyrin-like protein; Provisional

Probab=99.47  E-value=4.1e-13  Score=93.16  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=57.1

Q ss_pred             ccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH-cCCHHHHHHHHHcCCCCC
Q psy2938          39 KTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA-FGTQEMVEFLCERGADVN  109 (113)
Q Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~-~~~~~~v~~Ll~~g~~~~  109 (113)
                      +.+++.++..+.+++++|+..+..+++++|++.|++++.+|..|.||||+|+. .++.+++++|+.+|++++
T Consensus       442 GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~~LL~~ga~i~  513 (661)
T PHA02917        442 LKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLKMLLCHKPTLD  513 (661)
T ss_pred             CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHcCCChh
Confidence            33444445556666677766667789999999999999999999999999996 678999999999998875

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.47  E-value=1.3e-13  Score=60.04  Aligned_cols=32  Identities=34%  Similarity=0.583  Sum_probs=30.6

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          81 VGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        81 ~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            58999999999999999999999999999887

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.47  E-value=3.5e-13  Score=74.78  Aligned_cols=101  Identities=21%  Similarity=0.222  Sum_probs=75.7

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA   91 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~   91 (113)
                      .+..|.+|++++...++-..+..+...+......+..+.++++.+...+..+++++|++.+++++..+..|.||+|+|+.
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~   82 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAAR   82 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHH
Confidence            45779999999887666544444444443333344555555555555555689999999999999889999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCC
Q psy2938          92 FGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        92 ~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .++.+++++|++.|.+++..+
T Consensus        83 ~~~~~~~~~L~~~~~~~~~~~  103 (126)
T cd00204          83 NGNLDVVKLLLKHGADVNARD  103 (126)
T ss_pred             cCcHHHHHHHHHcCCCCcccC
Confidence            999999999999987766544

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.46  E-value=1.7e-13  Score=86.94  Aligned_cols=90  Identities=9%  Similarity=0.041  Sum_probs=62.3

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhcc-ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFK-TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA   91 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~   91 (113)
                      +..|.||+|+++..++-..+..+...|.+.+.. ...+.++++.|+..+..+++++|+..|++++.+|..|.||||+|+.
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~  146 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALM  146 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Confidence            357999999876444333333333444444432 2334555666666666789999999999999999999999999998


Q ss_pred             cCCHHHHHHHH
Q psy2938          92 FGTQEMVEFLC  102 (113)
Q Consensus        92 ~~~~~~v~~Ll  102 (113)
                      .++.+++..+.
T Consensus       147 ~~~~~~~~~~~  157 (300)
T PHA02884        147 ICNNFLAFMIC  157 (300)
T ss_pred             hCChhHHHHhc
Confidence            77666554443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.43  E-value=5.8e-13  Score=91.71  Aligned_cols=102  Identities=11%  Similarity=-0.006  Sum_probs=74.1

Q ss_pred             hhhccccCCCchhHHHHH---hhcc----C-----ccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCc
Q psy2938           8 AIQTFDVGRYQPSHCQAA---LNQE----G-----NIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEV   75 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l---~~~~----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~   75 (113)
                      +++..|..|.||+|...+   ...+    .     .++.+...+.+++.++..+.+++++|+..+..+++++|++.|+++
T Consensus       409 dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdI  488 (672)
T PHA02730        409 AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASV  488 (672)
T ss_pred             cccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCC
Confidence            356677889999984211   1100    0     123333445555555566677777777777778999999999999


Q ss_pred             cccCC-CCChHHHHHHHc--CCHHHHHHHHHcCCCCC
Q psy2938          76 NFMDD-VGQTLLNWASAF--GTQEMVEFLCERGADVN  109 (113)
Q Consensus        76 ~~~d~-~g~tpL~~A~~~--~~~~~v~~Ll~~g~~~~  109 (113)
                      +.+|. .|.||||+|+..  ++.+++++|+++|++++
T Consensus       489 N~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i~  525 (672)
T PHA02730        489 NTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTLE  525 (672)
T ss_pred             CCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCHH
Confidence            99996 699999999984  78999999999998764

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.42  E-value=4.4e-13  Score=93.19  Aligned_cols=67  Identities=18%  Similarity=0.265  Sum_probs=56.9

Q ss_pred             cccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHc-------CCCCCCC
Q psy2938          45 KTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-------GADVNKG  111 (113)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-------g~~~~~~  111 (113)
                      ++..+.+++++|+.++..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++       |++++..
T Consensus       111 ~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~  184 (664)
T PTZ00322        111 RDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPD  184 (664)
T ss_pred             cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCcc
Confidence            345566777777777777899999999999999999999999999999999999999998       6665543

>KOG0515|consensus

Probab=99.42  E-value=6.6e-13  Score=88.23  Aligned_cols=64  Identities=27%  Similarity=0.260  Sum_probs=56.3

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~  110 (113)
                      +.+-+++|.+.+.+++ +||+||+..|+++|..|.+||||||.|+.-++..+++.|+++|+.|-+
T Consensus       581 dEGITaLHNAiCaghy-eIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfA  644 (752)
T KOG0515|consen  581 DEGITALHNAICAGHY-EIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFA  644 (752)
T ss_pred             ccchhHHhhhhhcchh-HHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEe
Confidence            4556666777777777 599999999999999999999999999999999999999999987654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.41  E-value=3.3e-13  Score=65.69  Aligned_cols=44  Identities=18%  Similarity=0.171  Sum_probs=27.2

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWA   89 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A   89 (113)
                      +..+.+++|+|+..+..+++++|++.|++++.+|..|+||||+|
T Consensus        13 d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   13 DKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             -TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45566667777767777899999999999999999999999997

>KOG4177|consensus

Probab=99.40  E-value=5.6e-13  Score=95.46  Aligned_cols=101  Identities=17%  Similarity=0.124  Sum_probs=87.2

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..+..++||+|.++-.++...|.++.+.+.+...++..+.+++|.|+..++.+++++|+++|+++|..|..|.|||+
T Consensus       532 ~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~  611 (1143)
T KOG4177|consen  532 NVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLH  611 (1143)
T ss_pred             ceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhH
Confidence            34566778999999988888877888888888887777777777777777666888999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADV  108 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~  108 (113)
                      .|+..|+.++++.|...|+++
T Consensus       612 iA~~lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  612 IAVRLGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             HHHHhcccchhhHHHhccCcc
Confidence            999999999999999988874

>KOG0502|consensus

Probab=99.40  E-value=6.5e-13  Score=79.86  Aligned_cols=94  Identities=15%  Similarity=0.158  Sum_probs=71.0

Q ss_pred             hhccccCCCchhHHHHHhhcc--------CccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCC
Q psy2938           9 IQTFDVGRYQPSHCQAALNQE--------GNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDD   80 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~   80 (113)
                      .+.++..+|+|+.+..-.-+-        ..+|..+         ..+.++++++++.|+. .+++||+..|++++...+
T Consensus       122 gnevs~~p~s~~slsVhql~L~~~~~~~~n~VN~~D---------e~GfTpLiWAaa~G~i-~vV~fLL~~GAdp~~lgk  191 (296)
T KOG0502|consen  122 GNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKVNACD---------EFGFTPLIWAAAKGHI-PVVQFLLNSGADPDALGK  191 (296)
T ss_pred             CCccccccCChhhHHHHHHHHHHHHHHhhccccCcc---------ccCchHhHHHHhcCch-HHHHHHHHcCCChhhhhh
Confidence            456777888887765532211        1222222         4455666666666666 599999999999999999


Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          81 VGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        81 ~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ...++|++|+..|..++|++|+.++.|+|.-|
T Consensus       192 ~resALsLAt~ggytdiV~lLL~r~vdVNvyD  223 (296)
T KOG0502|consen  192 YRESALSLATRGGYTDIVELLLTREVDVNVYD  223 (296)
T ss_pred             hhhhhHhHHhcCChHHHHHHHHhcCCCcceec
Confidence            99999999999999999999999999998754

>KOG0512|consensus

Probab=99.39  E-value=4.8e-13  Score=77.75  Aligned_cols=102  Identities=19%  Similarity=0.113  Sum_probs=74.2

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhcccc-chHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTS-NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      .++.+|.+++||+|-++..++...+..+...+.....++. ++++++.++..++. +++-+|++.|+|+|+.....+|||
T Consensus        89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~-~va~~LLqhgaDVnA~t~g~ltpL  167 (228)
T KOG0512|consen   89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNF-EVAGRLLQHGADVNAQTKGLLTPL  167 (228)
T ss_pred             cccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccch-hHHHHHHhccCcccccccccchhh
Confidence            3567899999999998877777766666655555554444 45555555555555 688899999999999999999999


Q ss_pred             HHHHHcCCHH-HHHHHHH-cCCCCCC
Q psy2938          87 NWASAFGTQE-MVEFLCE-RGADVNK  110 (113)
Q Consensus        87 ~~A~~~~~~~-~v~~Ll~-~g~~~~~  110 (113)
                      |.|+...+.. .+.+|+. .+.++..
T Consensus       168 hlaa~~rn~r~t~~~Ll~dryi~pg~  193 (228)
T KOG0512|consen  168 HLAAGNRNSRDTLELLLHDRYIHPGL  193 (228)
T ss_pred             HHhhcccchHHHHHHHhhccccChhh
Confidence            9999876544 4566653 4555443

>KOG0507|consensus

Probab=99.37  E-value=2.6e-13  Score=92.95  Aligned_cols=107  Identities=13%  Similarity=0.044  Sum_probs=86.2

Q ss_pred             hhhhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChH
Q psy2938           6 SKAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL   85 (113)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tp   85 (113)
                      +.+.+..|..|+|.+|.++|.++-..+..+.+....+.+.+..+..+++++++.+..+++++++..+..+|.....|.||
T Consensus        39 sds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   39 SDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP  118 (854)
T ss_pred             CccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence            34566678899999999999888888777775555555545555555666665555578888888888899999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          86 LNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        86 L~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ||.|+.+||.+++.+|+.+|+|+-..|
T Consensus       119 lhlaaqhgh~dvv~~Ll~~~adp~i~n  145 (854)
T KOG0507|consen  119 LHLAAQHGHLEVVFYLLKKNADPFIRN  145 (854)
T ss_pred             cchhhhhcchHHHHHHHhcCCCccccC
Confidence            999999999999999999999987765

>PHA02792 ankyrin-like protein; Provisional

Probab=99.36  E-value=1.6e-12  Score=88.88  Aligned_cols=81  Identities=11%  Similarity=0.166  Sum_probs=58.5

Q ss_pred             HHHHhhccCccccccccccchhccccchHHHHHH-HHhCCHHHHHHHHHhCCCCcc------------------------
Q psy2938          22 CQAALNQEGNIEYKAHTKTHKTFKTSNILQLIEC-IRSKDTDALIETIDSGGVEVN------------------------   76 (113)
Q Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~~~~~~~------------------------   76 (113)
                      ...|+++|++++...          .++.++.++ +..+++.+++++|++.|++++                        
T Consensus        88 vk~LI~~GAdvN~~~----------n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~  157 (631)
T PHA02792         88 LKLLISKGLEINSIK----------NGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDD  157 (631)
T ss_pred             HHHHHHcCCCccccc----------CCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhh
Confidence            356677777777655          233344334 455778889999988887632                        


Q ss_pred             ------------ccCCCCChHHHHHHHcC-------CHHHHHHHHHcCCCCCCCC
Q psy2938          77 ------------FMDDVGQTLLNWASAFG-------TQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        77 ------------~~d~~g~tpL~~A~~~~-------~~~~v~~Ll~~g~~~~~~d  112 (113)
                                  ..|+.|.||||+|+..+       +.+++++|+++|++++.+|
T Consensus       158 ~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d  212 (631)
T PHA02792        158 ELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYT  212 (631)
T ss_pred             hccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccC
Confidence                        34556889999999888       7899999999998887765

>KOG0510|consensus

Probab=99.36  E-value=8.8e-13  Score=91.02  Aligned_cols=104  Identities=20%  Similarity=0.188  Sum_probs=87.7

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      +...|.-+.+|+|+++-...+..++.+...+.+....+....++.|.|..++..+..+.|++.|+|+|..|+.|.||||.
T Consensus        81 ~~a~D~~~n~~l~~a~~~~~~~~i~~Lls~gad~~~~n~~~~aplh~A~~~~~~s~L~~Ll~~~~dvnl~de~~~TpLh~  160 (929)
T KOG0510|consen   81 SYAKDSADNTPLHAAVEYNQGDKIQVLLSYGADTPLRNLNKNAPLHLAADSGNYSCLKLLLDYGADVNLEDENGFTPLHL  160 (929)
T ss_pred             hhhhhcccCchhHHHhhcchHHHHHHHHhcCCCCChhhhhccCchhhccccchHHHHHHHHHhcCCccccccCCCchhhH
Confidence            44568889999999887777777777777777777777777777888887777778888999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+.+++.|..+.|++.|+++...|
T Consensus       161 A~~~~~~E~~k~Li~~~a~~~K~~  184 (929)
T KOG0510|consen  161 AARKNKVEAKKELINKGADPCKSD  184 (929)
T ss_pred             HHhcChHHHHHHHHhcCCCCCccc
Confidence            999999998899999999986554

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.35  E-value=7.8e-12  Score=66.22  Aligned_cols=55  Identities=27%  Similarity=0.482  Sum_probs=46.1

Q ss_pred             HHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          54 ECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        54 ~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +.|++.+..+++++|++.+.+++.    |.||||+|+..|+.+++++|++.|++++.+|
T Consensus         2 ~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~   56 (89)
T PF12796_consen    2 HIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQD   56 (89)
T ss_dssp             HHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BS
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccC
Confidence            445555555789999998888876    8899999999999999999999999998764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.35  E-value=3.7e-12  Score=77.14  Aligned_cols=100  Identities=22%  Similarity=0.269  Sum_probs=76.5

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCH-----HHHHHHHHhCCC---CccccCCCCC
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDT-----DALIETIDSGGV---EVNFMDDVGQ   83 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~~~~~---~~~~~d~~g~   83 (113)
                      .+....++++.+...+....+......+...+.++..+.++++.+...+.     .+++++|++.|+   ..+.+|..|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            34457788888765555444444445555555566777777777776666     789999999999   5666699999


Q ss_pred             hHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          84 TLLNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        84 tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      ||||+|+..|+.+++.+|++.|++++.+
T Consensus       149 tpl~~A~~~~~~~~~~~ll~~~~~~~~~  176 (235)
T COG0666         149 TPLHWAALNGDADIVELLLEAGADPNSR  176 (235)
T ss_pred             chhHHHHHcCchHHHHHHHhcCCCCccc
Confidence            9999999999999999999999988765

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.26  E-value=1.5e-11  Score=86.65  Aligned_cols=101  Identities=19%  Similarity=0.065  Sum_probs=66.7

Q ss_pred             hhhhccccCCCchhH-HHHHhhccCccccccccccchhccccchHHHHHHHHhCCH---HHHHHHHHhCCCC------cc
Q psy2938           7 KAIQTFDVGRYQPSH-CQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDT---DALIETIDSGGVE------VN   76 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~~~~~------~~   76 (113)
                      .+++..|..|.||+| ++...++...+..+...+.    .+..+.+++|+++.+..   ..+...+...+.+      .+
T Consensus        43 ~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~----~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~  118 (743)
T TIGR00870        43 LNINCPDRLGRSALFVAAIENENLELTELLLNLSC----RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELAN  118 (743)
T ss_pred             cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC----CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhc
Confidence            346667889999999 5554444444444443332    24556677777776443   3344444443322      11


Q ss_pred             ----ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          77 ----FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        77 ----~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                          ..+..|.||||+|+..|+.+++++|+++|++++.+
T Consensus       119 ~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~  157 (743)
T TIGR00870       119 DQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPAR  157 (743)
T ss_pred             cccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcC
Confidence                12346999999999999999999999999999865

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.23  E-value=1.6e-11  Score=86.52  Aligned_cols=65  Identities=18%  Similarity=0.256  Sum_probs=54.3

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHhCCCCccccC--------------CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          48 NILQLIECIRSKDTDALIETIDSGGVEVNFMD--------------DVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d--------------~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.++++.|+..++.+++++|++.|++++.++              ..|.||||+|+..++.+++++|+++|+|++.+|
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            35556666666666689999999999998653              368999999999999999999999999998765

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0195|consensus

Probab=99.23  E-value=2e-11  Score=76.36  Aligned_cols=67  Identities=27%  Similarity=0.291  Sum_probs=59.6

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +..+-+++|+++++++..+++.|++.|+.+|..+...-||||+|+.+||-++|+.|++..+|+|+.+
T Consensus        31 ddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavn   97 (448)
T KOG0195|consen   31 DDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVN   97 (448)
T ss_pred             cccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhh
Confidence            4555566777777778889999999999999999888899999999999999999999999999875

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.23  E-value=6.5e-11  Score=82.59  Aligned_cols=61  Identities=31%  Similarity=0.297  Sum_probs=54.2

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        51 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+++++..|+. +.+++|++.|+++|.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        85 ~L~~aa~~G~~-~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d  145 (664)
T PTZ00322         85 ELCQLAASGDA-VGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLD  145 (664)
T ss_pred             HHHHHHHcCCH-HHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCC
Confidence            45666666665 57899999999999999999999999999999999999999999999876

>KOG1710|consensus

Probab=99.19  E-value=7.6e-11  Score=73.61  Aligned_cols=66  Identities=21%  Similarity=0.199  Sum_probs=53.1

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCcccc-CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFM-DDVGQTLLNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      +..+.+++..|++++...++++|+..|+|+|.. +..+.||||+|+..|+.++.++|++.|+.+...
T Consensus        42 D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~v  108 (396)
T KOG1710|consen   42 DPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLV  108 (396)
T ss_pred             CCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccc
Confidence            344445555555555557999999999999975 578999999999999999999999999976654

>KOG0505|consensus

Probab=99.17  E-value=5.8e-11  Score=78.84  Aligned_cols=79  Identities=23%  Similarity=0.274  Sum_probs=64.9

Q ss_pred             HHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHH
Q psy2938          23 QAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC  102 (113)
Q Consensus        23 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  102 (113)
                      ..++..|+.++..          ...+.+.+|-++...+.+++++|++.|+++|..|..||||||.|+.-|+..++.+|+
T Consensus        57 ~~ll~~ga~~~~~----------n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li  126 (527)
T KOG0505|consen   57 RKLLNRGASPNLC----------NVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLI  126 (527)
T ss_pred             HHHhccCCCcccc----------CCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHH
Confidence            3445556555443          455667777777777778999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCC
Q psy2938         103 ERGADVNKG  111 (113)
Q Consensus       103 ~~g~~~~~~  111 (113)
                      .+|+++.+.
T Consensus       127 ~~gA~~~av  135 (527)
T KOG0505|consen  127 QHGANLLAV  135 (527)
T ss_pred             Hhhhhhhhc
Confidence            999986554

>KOG0514|consensus

Probab=99.13  E-value=1.1e-10  Score=74.86  Aligned_cols=99  Identities=9%  Similarity=0.098  Sum_probs=85.2

Q ss_pred             hhhhhhcccc-CCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCC
Q psy2938           5 ASKAIQTFDV-GRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDS-GGVEVNFMDDVG   82 (113)
Q Consensus         5 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~~g   82 (113)
                      .+.+++.++. -|.|+||.+.-.+++..++.+...+.++++++..+++.++-|+..++.+++++|+. .++|+...|.+|
T Consensus       328 ~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~Dg  407 (452)
T KOG0514|consen  328 KMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDG  407 (452)
T ss_pred             hccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCC
Confidence            3455565543 68999999998888888888888889999999999999999998888899999885 589999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHH
Q psy2938          83 QTLLNWASAFGTQEMVEFLCE  103 (113)
Q Consensus        83 ~tpL~~A~~~~~~~~v~~Ll~  103 (113)
                      .|+|++|...||.||.-+|..
T Consensus       408 STAl~IAleagh~eIa~mlYa  428 (452)
T KOG0514|consen  408 STALSIALEAGHREIAVMLYA  428 (452)
T ss_pred             chhhhhHHhcCchHHHHHHHH
Confidence            999999999999999877764

>KOG3676|consensus

Probab=99.11  E-value=1.7e-10  Score=79.89  Aligned_cols=110  Identities=15%  Similarity=0.129  Sum_probs=76.2

Q ss_pred             cchhhhhhccccCCCchhHHHHHhhccCc---ccccccc------ccchhccccchHHHHHHHHhCCHHHHHHHHHhCCC
Q psy2938           3 KKASKAIQTFDVGRYQPSHCQAALNQEGN---IEYKAHT------KTHKTFKTSNILQLIECIRSKDTDALIETIDSGGV   73 (113)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~   73 (113)
                      |..+.+++.....|-|.+|.+.+..+...   +..+...      ..... ..+.+.+++|.|..+...++|++|+..|+
T Consensus       130 r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~-eeY~GqSaLHiAIv~~~~~~V~lLl~~gA  208 (782)
T KOG3676|consen  130 RLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTS-EEYYGQSALHIAIVNRDAELVRLLLAAGA  208 (782)
T ss_pred             hhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhh-HhhcCcchHHHHHHhccHHHHHHHHHcCC
Confidence            34577788888889999999887432211   1111100      11111 23445566666666666689999999999


Q ss_pred             Ccccc---------CC--------------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy2938          74 EVNFM---------DD--------------VGQTLLNWASAFGTQEMVEFLCERGADVNKGKL  113 (113)
Q Consensus        74 ~~~~~---------d~--------------~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d~  113 (113)
                      |++.+         |.              .|..||.+|+-.++++|+++|+++|||++++|.
T Consensus       209 DV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS  271 (782)
T KOG3676|consen  209 DVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDS  271 (782)
T ss_pred             chhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCcccc
Confidence            98832         22              367899999999999999999999999999873

>KOG4214|consensus

Probab=99.10  E-value=2.2e-10  Score=60.30  Aligned_cols=60  Identities=23%  Similarity=0.482  Sum_probs=50.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        51 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ...+....|...++.+++.. |.++|... .|++|||||+-+|+.+++.+|+..|++++.+|
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~-g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kD   64 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNE-GLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKD   64 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHc-cccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCcc
Confidence            44556677788888887765 57777544 89999999999999999999999999999887

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.07  E-value=2e-10  Score=69.54  Aligned_cols=98  Identities=16%  Similarity=0.187  Sum_probs=79.5

Q ss_pred             hhhccccCCCchhHHHHHhhc-----cCcccccccccc---chhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQ-----EGNIEYKAHTKT---HKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMD   79 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d   79 (113)
                      +++..+..|.||+|++...++     ...+..+...+.   ....++..+.++++++...+...++++|++.|++++..+
T Consensus        98 ~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~  177 (235)
T COG0666          98 DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRN  177 (235)
T ss_pred             CcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccc
Confidence            346788999999999998777     566666665555   445446666666666666666689999999999999999


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHHcC
Q psy2938          80 DVGQTLLNWASAFGTQEMVEFLCERG  105 (113)
Q Consensus        80 ~~g~tpL~~A~~~~~~~~v~~Ll~~g  105 (113)
                      ..|.|++++|+..++.++++.++..+
T Consensus       178 ~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         178 SYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999864

>KOG3676|consensus

Probab=99.05  E-value=9.4e-10  Score=76.29  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=74.0

Q ss_pred             cccCCCchhHH----------HHHhhccCccccccccc-----cchhc---------cccchHHHHHHHHhCCHHHHHHH
Q psy2938          12 FDVGRYQPSHC----------QAALNQEGNIEYKAHTK-----THKTF---------KTSNILQLIECIRSKDTDALIET   67 (113)
Q Consensus        12 ~~~~~~~~~~~----------~~l~~~~~~~~~~~~~~-----~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~   67 (113)
                      ...-|.||||.          +.|+..||||+..-...     .....         .-.++.|+..||+.++. +++++
T Consensus       180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~-eivrl  258 (782)
T KOG3676|consen  180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQP-EIVRL  258 (782)
T ss_pred             HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCH-HHHHH
Confidence            34568888887          55688899988654211     00011         12456677777787776 59999


Q ss_pred             HHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy2938          68 IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        68 L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      |++.|+|++.+|..|+|.||..+.+-..++-++++++|++
T Consensus       259 Ll~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~  298 (782)
T KOG3676|consen  259 LLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN  298 (782)
T ss_pred             HHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999999999999999998

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.05  E-value=6.4e-10  Score=61.52  Aligned_cols=93  Identities=17%  Similarity=0.149  Sum_probs=68.6

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWA   89 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A   89 (113)
                      ...+..|.+|++++...+....++.....+......+..+.++++++...+...++++|++.+.+++..+..|.||+++|
T Consensus        34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~  113 (126)
T cd00204          34 NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLA  113 (126)
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            45677888999988765544333333333333333344455666666666667899999999999999999999999999


Q ss_pred             HHcCCHHHHHHHH
Q psy2938          90 SAFGTQEMVEFLC  102 (113)
Q Consensus        90 ~~~~~~~~v~~Ll  102 (113)
                      ...++.+++++|+
T Consensus       114 ~~~~~~~~~~~Ll  126 (126)
T cd00204         114 AKNGHLEVVKLLL  126 (126)
T ss_pred             HhcCCHHHHHHhC
Confidence            9999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0783|consensus

Probab=99.00  E-value=1.8e-10  Score=80.44  Aligned_cols=68  Identities=18%  Similarity=0.263  Sum_probs=58.2

Q ss_pred             cccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          45 KTSNILQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++..+++.+|.+..-+...+.+.|+++|+++..+| ..|+||||-|+.+|+.+|+-.|+.+|++...+|
T Consensus        48 kD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~D  116 (1267)
T KOG0783|consen   48 KDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKD  116 (1267)
T ss_pred             HHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEec
Confidence            45556666666666666679999999999999999 589999999999999999999999999877665

>KOG0705|consensus

Probab=98.86  E-value=1e-08  Score=69.28  Aligned_cols=64  Identities=23%  Similarity=0.229  Sum_probs=53.8

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN  109 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~  109 (113)
                      +.++++.+|.++...+..+.++|+..|+|+...|.+|+|+|.||-..|..+|+++|+.+|...+
T Consensus       658 ~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  658 EGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             CCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            4455556666655555569999999999999999999999999999999999999999997543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.84  E-value=4.6e-09  Score=50.55  Aligned_cols=31  Identities=45%  Similarity=0.778  Sum_probs=26.9

Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          82 GQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        82 g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+||||+|+..|+.+++++|+++|++++.+|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d   31 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQD   31 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCC
Confidence            7899999999999999999999999999775

...

>KOG0507|consensus

Probab=98.74  E-value=9.9e-09  Score=71.14  Aligned_cols=104  Identities=13%  Similarity=0.114  Sum_probs=55.6

Q ss_pred             hhhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCc--------ccc
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEV--------NFM   78 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~--------~~~   78 (113)
                      +..+.....|.||+|.++..+|-+.+.++...+.+..+++....+++-++++.+..++++.|++....+        ..+
T Consensus       106 d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~  185 (854)
T KOG0507|consen  106 DILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKR  185 (854)
T ss_pred             cCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCC
Confidence            455666777777877766555555555444444444444455555555555555555555554331111        112


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy2938          79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        79 d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~  110 (113)
                      +-.+-+|||.|+.+||.++++.|+++|.|+|.
T Consensus       186 ~~~~~~plHlaakngh~~~~~~ll~ag~din~  217 (854)
T KOG0507|consen  186 PFPAIYPLHLAAKNGHVECMQALLEAGFDINY  217 (854)
T ss_pred             CCCCcCCcchhhhcchHHHHHHHHhcCCCccc
Confidence            33445566666666666666666666666553

>KOG0818|consensus

Probab=98.71  E-value=5.8e-08  Score=64.81  Aligned_cols=72  Identities=18%  Similarity=0.156  Sum_probs=56.6

Q ss_pred             HHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy2938          24 AALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCE  103 (113)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  103 (113)
                      -++..|+++|+...        +.+.++++.+++.|+.. -+++|.-.|+|++..|..|.||+.+|-..||.++...|++
T Consensus       151 Rll~lGA~~N~~hp--------ekg~TpLHvAAk~Gq~~-Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  151 RLLSLGAQANFFHP--------EKGNTPLHVAAKAGQIL-QAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HHHHcccccCCCCc--------ccCCchhHHHHhccchh-hhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            44788999998772        34555555555556554 5777888999999999999999999999999999887776


Q ss_pred             c
Q psy2938         104 R  104 (113)
Q Consensus       104 ~  104 (113)
                      .
T Consensus       222 ~  222 (669)
T KOG0818|consen  222 I  222 (669)
T ss_pred             H
Confidence            3

>KOG0511|consensus

Probab=98.70  E-value=8.5e-08  Score=62.23  Aligned_cols=59  Identities=32%  Similarity=0.409  Sum_probs=52.9

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy2938          48 NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      ....++.+++.|+.. .++.|++.|+++|..|+....||.+|+.-||.++|++|+++||-
T Consensus        36 ~f~elceacR~GD~d-~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   36 PFGELCEACRAGDVD-RVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             chHHHHHHhhcccHH-HHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            366677888888875 78889999999999999999999999999999999999999983

>KOG1710|consensus

Probab=98.61  E-value=2.3e-07  Score=58.43  Aligned_cols=86  Identities=16%  Similarity=0.210  Sum_probs=66.0

Q ss_pred             hhhhccccCCCchhHHH----------HHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCcc
Q psy2938           7 KAIQTFDVGRYQPSHCQ----------AALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVN   76 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~   76 (113)
                      .+++..|..|.+++..+          .++.+|+|||..-.        ....++++.+|-+|+. .++++|++.|+...
T Consensus        36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qh--------g~~YTpLmFAALSGn~-dvcrllldaGa~~~  106 (396)
T KOG1710|consen   36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQH--------GTLYTPLMFAALSGNQ-DVCRLLLDAGARMY  106 (396)
T ss_pred             hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccc--------cccccHHHHHHHcCCc-hHHHHHHhccCccc
Confidence            45778899999998754          44677888876542        1234444445455555 69999999999999


Q ss_pred             ccCCCCChHHHHHHHcCCHHHHHHH
Q psy2938          77 FMDDVGQTLLNWASAFGTQEMVEFL  101 (113)
Q Consensus        77 ~~d~~g~tpL~~A~~~~~~~~v~~L  101 (113)
                      ..+.-|+|+-..|+.-|+.+||...
T Consensus       107 ~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen  107 LVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             cccchhhhHHHHHHHhcchHHHHHH
Confidence            9999999999999999999998764

>KOG0506|consensus

Probab=98.57  E-value=6.1e-08  Score=64.40  Aligned_cols=63  Identities=24%  Similarity=0.296  Sum_probs=38.7

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHc-CCCCCCCC
Q psy2938          49 ILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNKGK  112 (113)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-g~~~~~~d  112 (113)
                      ...+++++..|+...+.+++++ |.|++.+|.+.+|+||.|+..|+.+++++|++. +.+++.+|
T Consensus       507 ~i~~~~aa~~GD~~alrRf~l~-g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kD  570 (622)
T KOG0506|consen  507 VINVMYAAKNGDLSALRRFALQ-GMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKD  570 (622)
T ss_pred             hhhhhhhhhcCCHHHHHHHHHh-cccccccccccchhheeecccCceeHHHHHHHHHcCCCChhh
Confidence            3445566666666666665554 566666666666666666666666666666653 55555543

>KOG0515|consensus

Probab=98.56  E-value=3e-07  Score=62.02  Aligned_cols=63  Identities=30%  Similarity=0.285  Sum_probs=51.3

Q ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          50 LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..++.-++..+..++|+-.+..--|+...+..|-|+||-|+-.||.+||+||++.|+++|+.|
T Consensus       551 LaLLLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~D  613 (752)
T KOG0515|consen  551 LALLLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAAD  613 (752)
T ss_pred             HHHHHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCcc
Confidence            344444444444457777777778888889999999999999999999999999999999876

>KOG4369|consensus

Probab=98.49  E-value=2.4e-08  Score=72.29  Aligned_cols=61  Identities=26%  Similarity=0.303  Sum_probs=36.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCCccccC--CCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy2938          50 LQLIECIRSKDTDALIETIDSGGVEVNFMD--DVGQTLLNWASAFGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~  110 (113)
                      .+++..++.+.+.+++..|++.|+.+|.+.  +.|-.||+.|...||.+.++.|++.|.|+|+
T Consensus       858 ytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNa  920 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA  920 (2131)
T ss_pred             cCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcc
Confidence            444455555666666666666666665543  4555666666666666666666666666554

>KOG4369|consensus

Probab=98.47  E-value=3.4e-08  Score=71.57  Aligned_cols=98  Identities=12%  Similarity=0.036  Sum_probs=73.2

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhcc-ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFK-TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA   91 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~   91 (113)
                      ...|..||+.+.+.+|.+....+...+.+++.+ ..+..+.+-.+..-...+++.+|+...++++.+-+.|.|||+-++.
T Consensus       889 SklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~evv~lLLa~~anvehRaktgltplme~As  968 (2131)
T KOG4369|consen  889 SKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRPEVVFLLLAAQANVEHRAKTGLTPLMEMAS  968 (2131)
T ss_pred             cccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcchHHHHHHHHhhhhhhhcccCCcccchhhc
Confidence            346777888877777665555544444443332 2233444555555566679999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCC
Q psy2938          92 FGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        92 ~~~~~~v~~Ll~~g~~~~~  110 (113)
                      .|.+++-++|+..|+|+|+
T Consensus       969 gGyvdvg~~li~~gad~na  987 (2131)
T KOG4369|consen  969 GGYVDVGNLLIAAGADTNA  987 (2131)
T ss_pred             CCccccchhhhhccccccc
Confidence            9999999999999999986

>KOG0506|consensus

Probab=98.44  E-value=7.3e-08  Score=64.05  Aligned_cols=64  Identities=19%  Similarity=0.155  Sum_probs=53.6

Q ss_pred             hhccccchHHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcC
Q psy2938          42 KTFKTSNILQLIECIRSKDTDALIETIDS-GGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG  105 (113)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  105 (113)
                      ....++..++.+|.|+..++.++++||++ .+++++.+|..|+|||--|...+|.+++++|.+.-
T Consensus       532 ~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~  596 (622)
T KOG0506|consen  532 LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQ  596 (622)
T ss_pred             ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHh
Confidence            33346777777777777777789999985 58999999999999999999999999999998754

>KOG0818|consensus

Probab=98.44  E-value=8.4e-07  Score=59.47  Aligned_cols=63  Identities=27%  Similarity=0.297  Sum_probs=52.3

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          49 ILQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.++..++.++.. .+--|+.-|+++|..+ ..|.||||.|+..|+..-+.+|+-.|+|+++.|
T Consensus       134 srQLhasvRt~nle-t~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d  197 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLE-TCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQD  197 (669)
T ss_pred             HHHHHHHhhcccHH-HHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCC
Confidence            45566666677775 5445667899999987 589999999999999999999999999999876

>KOG0520|consensus

Probab=98.40  E-value=4.3e-08  Score=69.88  Aligned_cols=65  Identities=26%  Similarity=0.334  Sum_probs=53.9

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~  110 (113)
                      +..+....|.++.+++...+.+....|..++.+|..||||||||+.+|+..++..|++.|++..+
T Consensus       605 d~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  605 DRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGA  669 (975)
T ss_pred             cccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhcccccc
Confidence            44455556668888887666666678999999999999999999999999999999998887653

>KOG0521|consensus

Probab=98.39  E-value=3.2e-07  Score=65.18  Aligned_cols=64  Identities=28%  Similarity=0.354  Sum_probs=57.0

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          49 ILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +.+++|.+...+...++++|++.|+++|..|..|++|+|.+...|+...+..|+++|++.++.+
T Consensus       656 ~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~  719 (785)
T KOG0521|consen  656 GCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFD  719 (785)
T ss_pred             ccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccC
Confidence            4566677777777789999999999999999999999999999999999999999999988754

>smart00248 ANK ankyrin repeats

Probab=98.36  E-value=1.4e-06  Score=35.44  Aligned_cols=29  Identities=41%  Similarity=0.645  Sum_probs=26.3

Q ss_pred             CCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q psy2938          81 VGQTLLNWASAFGTQEMVEFLCERGADVN  109 (113)
Q Consensus        81 ~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~  109 (113)
                      .|.||+|+|+..++.++++.|++.|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            47899999999999999999999998765

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.19  E-value=1.4e-06  Score=37.53  Aligned_cols=30  Identities=10%  Similarity=0.259  Sum_probs=23.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccccCC
Q psy2938          51 QLIECIRSKDTDALIETIDSGGVEVNFMDD   80 (113)
Q Consensus        51 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~   80 (113)
                      +++++|+..+..+++++|++.|++++.+|.
T Consensus         4 TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    4 TPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            445555555566799999999999998873

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522|consensus

Probab=98.18  E-value=1.2e-05  Score=54.39  Aligned_cols=56  Identities=16%  Similarity=0.218  Sum_probs=45.6

Q ss_pred             cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy2938          47 SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCE  103 (113)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  103 (113)
                      .+++++|+++..++.. .+++|+..|+++..++..||+|||-|+..|+.+++.-++.
T Consensus        54 ~g~TpLhlAV~Lg~~~-~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   54 PGRTPLHLAVRLGHVE-AARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             CCCccHHHHHHhcCHH-HHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            4456666666666665 7778888999999999999999999999999988776664

>PF13606 Ank_3: Ankyrin repeat

Probab=98.17  E-value=2e-06  Score=36.26  Aligned_cols=27  Identities=15%  Similarity=0.186  Sum_probs=19.8

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccc
Q psy2938          51 QLIECIRSKDTDALIETIDSGGVEVNF   77 (113)
Q Consensus        51 ~~~~~~~~~~~~~~~~~L~~~~~~~~~   77 (113)
                      ++++.|+..+..+++++|++.|+|+|.
T Consensus         4 T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    4 TPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            445555555566799999999999873

>KOG3609|consensus

Probab=98.13  E-value=4.1e-06  Score=59.14  Aligned_cols=61  Identities=21%  Similarity=0.102  Sum_probs=42.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHhCCCCc---------c-ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q psy2938          49 ILQLIECIRSKDTDALIETIDSGGVEV---------N-FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~L~~~~~~~---------~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~  110 (113)
                      +.+++++.+.+.. +++++++......         + ..-..+-||+.+||+.++.||+++|+.+|+++..
T Consensus        89 gdALL~aI~~~~v-~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   89 GDALLLAIAVGSV-PLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             chHHHHHHHHHHH-HHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCC
Confidence            5555555555544 5777776443222         1 2234677999999999999999999999998754

>KOG0522|consensus

Probab=97.98  E-value=1.7e-05  Score=53.69  Aligned_cols=62  Identities=26%  Similarity=0.290  Sum_probs=48.0

Q ss_pred             HHHHHHhCCHHHHHHHHH-hCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy2938          52 LIECIRSKDTDALIETID-SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL  113 (113)
Q Consensus        52 ~~~~~~~~~~~~~~~~L~-~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d~  113 (113)
                      ++..+...+...+.+.|. +.+..++..|-.|+||||.|+..|+.+.++.|+.+|+++..+|.
T Consensus        24 lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~   86 (560)
T KOG0522|consen   24 LHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNN   86 (560)
T ss_pred             cchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcccccc
Confidence            344444555555655443 34567888899999999999999999999999999999887763

>KOG0782|consensus

Probab=97.98  E-value=1.2e-05  Score=55.09  Aligned_cols=66  Identities=18%  Similarity=0.328  Sum_probs=40.4

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCC--ccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVE--VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~--~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      .....+++|+++.-+.-+++++++.+|..  +++.|..|.|+||.|+..++-.+.++|++.|++....
T Consensus       896 ~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~kt  963 (1004)
T KOG0782|consen  896 GPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKT  963 (1004)
T ss_pred             CcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheec
Confidence            34445555555554444577777665543  4455667777777777777777777777777665443

>KOG2384|consensus

Probab=97.95  E-value=9e-05  Score=44.32  Aligned_cols=41  Identities=22%  Similarity=0.196  Sum_probs=23.9

Q ss_pred             HHHHHHhCC-CCccccCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy2938          64 LIETIDSGG-VEVNFMDDVGQTLLNWASAFGTQEMVEFLCER  104 (113)
Q Consensus        64 ~~~~L~~~~-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  104 (113)
                      .+.+|+..| +.+...|.+|.+++.+|-..|..++++.|.+.
T Consensus        27 avsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen   27 AVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             HHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            455555555 55555666666666666666666666655543

>KOG2505|consensus

Probab=97.80  E-value=8.8e-05  Score=50.13  Aligned_cols=91  Identities=8%  Similarity=0.099  Sum_probs=62.3

Q ss_pred             hhhhhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCh
Q psy2938           5 ASKAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQT   84 (113)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~t   84 (113)
                      +.+.+...-..+.-|..++++..++.+.|.......    .+..-++++|+++..+..+++.+|++.|+|+.++|..|+|
T Consensus       390 ~Te~i~s~lkk~~~p~~ie~lken~lsgnf~~~pe~----~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grt  465 (591)
T KOG2505|consen  390 KTEHIISRLKKKPEPDSIEALKENLLSGNFDVTPEA----NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRT  465 (591)
T ss_pred             hhHHHHHHHhccCchhHHHHHHhcCCcccccccccc----cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCC
Confidence            344455555566678889999999988877552110    1233456666666655556777788889999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHH
Q psy2938          85 LLNWASAFGTQEMVEFLC  102 (113)
Q Consensus        85 pL~~A~~~~~~~~v~~Ll  102 (113)
                      |...+.   +.++-..|+
T Consensus       466 py~ls~---nkdVk~~F~  480 (591)
T KOG2505|consen  466 PYSLSA---NKDVKSIFI  480 (591)
T ss_pred             cccccc---cHHHHHHHH
Confidence            999887   455544444

>KOG2384|consensus

Probab=97.78  E-value=2.3e-05  Score=46.76  Aligned_cols=75  Identities=11%  Similarity=0.110  Sum_probs=60.9

Q ss_pred             hhhhhccccCCCchhHHHHHhhccCccccccccc-cchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCC
Q psy2938           6 SKAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTK-THKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDD   80 (113)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~   80 (113)
                      ..+++..|.-|||+++|+++-+..+-+.++..++ ..+-..+..+......+..++...++..|.+.-.+-...+.
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~n   77 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPMN   77 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCccc
Confidence            3567889999999999999988888888888776 56666677788888899999999999999877655555543

>KOG0783|consensus

Probab=97.76  E-value=8.9e-06  Score=57.92  Aligned_cols=74  Identities=14%  Similarity=-0.005  Sum_probs=54.0

Q ss_pred             hhccccCCCchhHHH----------HHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCcccc
Q psy2938           9 IQTFDVGRYQPSHCQ----------AALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFM   78 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~----------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~   78 (113)
                      .++.|.-|.+++|.+          .|+.||+++...+.        .. +.+++|-+...++.+.+.+|++.|+.+..+
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~--------ES-G~taLHRaiyyG~idca~lLL~~g~SL~i~  115 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDE--------ES-GYTALHRAIYYGNIDCASLLLSKGRSLRIK  115 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccc--------cc-cchHhhHhhhhchHHHHHHHHhcCCceEEe
Confidence            346788999998864          44566666665551        23 445555555555556888899999999999


Q ss_pred             CCCCChHHHHHHH
Q psy2938          79 DDVGQTLLNWASA   91 (113)
Q Consensus        79 d~~g~tpL~~A~~   91 (113)
                      |+.|..||..-+.
T Consensus       116 Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  116 DKEGLSPLQFLSR  128 (1267)
T ss_pred             cccCCCHHHHHhh
Confidence            9999999999886

>KOG2505|consensus

Probab=97.75  E-value=0.00013  Score=49.27  Aligned_cols=58  Identities=26%  Similarity=0.410  Sum_probs=47.7

Q ss_pred             HHHhCCHHHHHHHHHhCCCCccc------cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          55 CIRSKDTDALIETIDSGGVEVNF------MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        55 ~~~~~~~~~~~~~L~~~~~~~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ....+..+..+++|.+++++.|.      .+..-.|+||||+..|..++|.+|++.|+|+..+|
T Consensus       397 ~lkk~~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd  460 (591)
T KOG2505|consen  397 RLKKKPEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKD  460 (591)
T ss_pred             HHhccCchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcc
Confidence            33456667888999988888763      34456799999999999999999999999998776

>KOG0782|consensus

Probab=97.60  E-value=0.00016  Score=49.95  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=72.3

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccch---hccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHK---TFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      .+.+.-+.+|+++-.+.|..+.+..+.+...   .....+.+.++.+++.++. .++++|...|+.+...|..|.||-..
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r-~vc~~lvdagasl~ktd~kg~tp~er  973 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNR-AVCQLLVDAGASLRKTDSKGKTPQER  973 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcch-HHHHHHHhcchhheecccCCCChHHH
Confidence            3444556788888889999998887665432   2234556666777777776 59999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHH
Q psy2938          89 ASAFGTQEMVEFLCE  103 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~  103 (113)
                      |-..|..+++.+|-.
T Consensus       974 aqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  974 AQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHhcCCchHHHHHhh
Confidence            999999999999865

>KOG0705|consensus

Probab=97.60  E-value=0.00025  Score=48.86  Aligned_cols=66  Identities=20%  Similarity=0.178  Sum_probs=48.8

Q ss_pred             cchHHHHHHHHhCCHHHHHHHHHhCCCCcc----ccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy2938          47 SNILQLIECIRSKDTDALIETIDSGGVEVN----FMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL  113 (113)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~----~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d~  113 (113)
                      .-+..++.++...+.. .+-+|+.+|....    ..+.+|+|+||+||..|+..+.++|+=+|+|+.++|.
T Consensus       623 ~lgqqLl~A~~~~Dl~-t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda  692 (749)
T KOG0705|consen  623 PLGQQLLRAVAAEDLQ-TAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDA  692 (749)
T ss_pred             chHHHHHHHHHHHHHH-HHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceeccc
Confidence            3345666666666654 4555666665433    2356889999999999999999999999999988773

>KOG0521|consensus

Probab=97.17  E-value=0.00015  Score=52.08  Aligned_cols=71  Identities=17%  Similarity=0.169  Sum_probs=52.2

Q ss_pred             HHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q psy2938          22 CQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL  101 (113)
Q Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~L  101 (113)
                      ++.++..|++++.++         ..+..++++....|+.. .+..|+++|++.+..+..|.+|+.+|....+.+++-++
T Consensus       672 ~e~ll~~ga~vn~~d---------~~g~~plh~~~~~g~~~-~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~  741 (785)
T KOG0521|consen  672 VELLLQNGADVNALD---------SKGRTPLHHATASGHTS-IACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVLLL  741 (785)
T ss_pred             HHHHHhcCCcchhhh---------ccCCCcchhhhhhcccc-hhhhhccccccccccCccCcchhhHHhhhccccHHHHH
Confidence            345566666666665         44566666777777765 55566679999999999999999999877777776655


Q ss_pred             H
Q psy2938         102 C  102 (113)
Q Consensus       102 l  102 (113)
                      .
T Consensus       742 ~  742 (785)
T KOG0521|consen  742 R  742 (785)
T ss_pred             h
Confidence            4

>KOG3609|consensus

Probab=95.43  E-value=0.023  Score=41.18  Aligned_cols=61  Identities=15%  Similarity=0.225  Sum_probs=40.8

Q ss_pred             cchHHHHHHHHhCCHHHHHHHHHhCC---CCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy2938          47 SNILQLIECIRSKDTDALIETIDSGG---VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~L~~~~---~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      .++...+.++-.|+.+.+.+.|-...   .++|+.|.-|+++|+.|..+.+.+++.+|++++..
T Consensus        24 ~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~   87 (822)
T KOG3609|consen   24 EGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE   87 (822)
T ss_pred             hhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc
Confidence            34455566667777776666665332   46667777777777777777777777777766543

>KOG0511|consensus

Probab=94.65  E-value=0.033  Score=37.20  Aligned_cols=67  Identities=6%  Similarity=-0.045  Sum_probs=43.8

Q ss_pred             hhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcC
Q psy2938          26 LNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG   93 (113)
Q Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~   93 (113)
                      -|....+..+..+|++++..+.....++..|+--+++.++++|+++|+-.+.-..+| --.||++.+.
T Consensus        46 ~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G-~RC~YgaLnd  112 (516)
T KOG0511|consen   46 AGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDG-DRCHYGALND  112 (516)
T ss_pred             cccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCc-chhhhhhhhH
Confidence            333344444445666666666666777777777777789999999998776433344 4556766654

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.09  E-value=0.27  Score=30.83  Aligned_cols=46  Identities=33%  Similarity=0.432  Sum_probs=37.0

Q ss_pred             HHHHHHHHhCC-CCcccc---CCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy2938          62 DALIETIDSGG-VEVNFM---DDVGQTLLNWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        62 ~~~~~~L~~~~-~~~~~~---d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      ..+.+.++++| +++|.+   -..|-|-|--|..+++.+++.+|+++|+-
T Consensus       230 ~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  230 YKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            34666666655 677754   45899999999999999999999999984

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG0520|consensus

Probab=94.00  E-value=0.13  Score=38.27  Aligned_cols=94  Identities=17%  Similarity=0.120  Sum_probs=64.5

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccc------cCCCCC
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNF------MDDVGQ   83 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~------~d~~g~   83 (113)
                      ...|.++.--.|..+.++...-+-...-.+..+.+++..+.+++++|+..+++.++..|.+-|++...      .+-.|.
T Consensus       602 ~eld~d~qgV~hfca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~  681 (975)
T KOG0520|consen  602 LELDRDGQGVIHFCAALGYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGK  681 (975)
T ss_pred             hhhcccCCChhhHhhhcCCceeEEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCC
Confidence            34444555555554434444433333344566777788888899999999988899989865554442      234689


Q ss_pred             hHHHHHHHcCCHHHHHHHHH
Q psy2938          84 TLLNWASAFGTQEMVEFLCE  103 (113)
Q Consensus        84 tpL~~A~~~~~~~~v~~Ll~  103 (113)
                      |+--.|...|+..+..+|-+
T Consensus       682 ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  682 TAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             chhhhhhcccccchHHHHhh
Confidence            99999999999999888765

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=91.65  E-value=0.9  Score=23.12  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=32.3

Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHc
Q psy2938          53 IECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER  104 (113)
Q Consensus        53 ~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  104 (113)
                      +..|..|+..++++.+++.+ .++      ...+..|+...+-+++++|++.
T Consensus        10 l~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen   10 LEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            45555566667888777643 221      3579999999999999999874

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=82.65  E-value=6.6  Score=23.97  Aligned_cols=45  Identities=13%  Similarity=0.237  Sum_probs=29.1

Q ss_pred             HHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHH
Q psy2938          53 IECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCE  103 (113)
Q Consensus        53 ~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  103 (113)
                      +..|+.++....+.-.++.|-+++.      +.|..|+.+++-.++.+|+.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            4445555544444444566666553      78888888888888888764

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	113
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		3e-05
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		3e-05
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		3e-05
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-05
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-05
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		9e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		1e-04
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		1e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		1e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		1e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		3e-04
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		3e-04
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		3e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		3e-04
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		3e-04
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		3e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-04
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		8e-04
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		9e-04

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN MDD G T L+ A+  G  E+VE L + GADVN
Sbjct: 17  KLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN MDD G T L+ A+  G  E+VE L + GADVN
Sbjct: 17  KLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN MDD G T L+ A+  G  E+VE L + GADVN
Sbjct: 17  KLLEATRAGQDDE-VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN 74

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN  D VG T L+ A+ FG  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVN 74

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +LIE   + + D + + I++G  +VN  D  G+T L++A+  G +E+V+ L  +GADVN
Sbjct: 7   RLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN 64

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN  DD G T L+ A+  G  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN 74

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           ++E +   G +VN +D +G+T L+  + +G  E+VE L + GADVN
Sbjct: 62  IVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           ++E +   G +VN  D +G T L+ A+ FG  E+VE L + GADVN
Sbjct: 62  IVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVN 107

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           ++E +   G +VN  D+ G T L+ A+ FG  E+VE L + GADVN
Sbjct: 62  IVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           ++E +   G +VN +D  G T L  A+ FG  E+VE L + GADVN
Sbjct: 62  IVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN  DD G+T L+ A+  G  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN 74

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +LIE   + + D + + I++G  +VN  D  G+T L+ A+  G +E+V+ L  +GADVN
Sbjct: 7   RLIEAAENGNKDRVKDLIENG-ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN 64

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +L+E  R+   D  +  + + G +VN  D+ G T L+ A++ G  E+VE L + GADVN 
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVNA 75
Query: 111 GKL 113
             L
Sbjct: 76  SDL 78

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           ++E +   G +VN MD  G T L+ A+ +G  E+VE L + GADVN
Sbjct: 95  IVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN  D  G T L+ A+ FG  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVN 74

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN  D  G T L+ A+ +G  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 27/48 (56%)
Query: 60  DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
           + D L E +  G   VN  D+ G T L WASAFG  E V FL E GAD
Sbjct: 14  ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 24/50 (48%), Positives = 28/50 (56%)
Query: 60  DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           + D L E +  G   VN  D+ G T L WASAFG  E V FL E GAD +
Sbjct: 14  ELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH 63

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN  D  G T L+ A+ +G  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN 74

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G + N  D  G+T L+ A+A G  E+VE L   GADVN
Sbjct: 5   KLLEAARAGQDDE-VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVN 62

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN  D+ G T L  A+A G  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN 74

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN +D+ G T L+ A+  G  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN 74

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 27/51 (52%)
Query: 63  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL 113
            + E + S G  VN  D  G+T L W+  FG  EM  FL E GA+VN   L
Sbjct: 82  GIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL 132

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           ++E +   G +VN  D +  T L+WA+    QE+VE L + GADV+
Sbjct: 82  IVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH 127

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 38.5 bits (88), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +L+E  R+   D  +  + + G +VN  D  G T L+ A+  G  E+VE L + GADVN
Sbjct: 17  KLLEAARAGQDDE-VRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN 74

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	113
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-08
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	8e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-08
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-06
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-08
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-05
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-04
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-08
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-06
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-05
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-04
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-08
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-08
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	7e-06
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-05
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-08
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	6e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	7e-07
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-06
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-04
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-07
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-04
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-07
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	8e-06
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-06
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-07
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-07
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-07
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	4e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-07
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-07
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-07
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-07
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	4e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-05
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	3e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-07
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-07
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-05
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-06
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-05
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-05
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-06
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	6e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	9e-05
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-06
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	9e-05
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-06
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	4e-06
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-05
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	5e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	9e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	7e-06
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	8e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	7e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-05
2rfa_A	232	Transient receptor potential cation channel subfa	6e-05
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	6e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-04
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-04
2etb_A	256	Transient receptor potential cation channel subfam	6e-04

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 49.0 bits (118), Expect = 1e-08
 Identities = 21/43 (48%), Positives = 24/43 (55%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +  G   VN  D+ G T L WASAFG  E V FL E GAD + 
Sbjct: 22  LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.7 bits (107), Expect = 5e-07
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
              V++N  D  G T L +A      + VE L  RGAD+  
Sbjct: 90  ERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT 130

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 44.3 bits (106), Expect = 8e-07
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G + + +    ++ L+ AS  G  ++V  L ER  D+N 
Sbjct: 57  EWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI 97

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 42.0 bits (100), Expect = 4e-06
 Identities = 7/41 (17%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + G ++    D G T ++ A A G +++ + +      + +
Sbjct: 123 ARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQ 163

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 47.8 bits (115), Expect = 2e-08
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 71  GGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G   ++ +       L  A+A G  E V  L E GAD N 
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA 40

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G + N ++  G+  +      G+ ++ E L   GA+ N 
Sbjct: 33  EAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNC 72

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 72  GVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNK 110
           G E N  D    T  ++ A+  G  + +  L   GA ++ 
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.7 bits (94), Expect = 2e-05
 Identities = 7/38 (18%), Positives = 16/38 (42%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
             G  ++  D  G+  ++ A   G +++  +L     D
Sbjct: 99  RAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 49.0 bits (118), Expect = 2e-08
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           L+     GG E++  +++ QT L+ A       +V  L   GA    
Sbjct: 28  LVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA 74

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G  VN     G + L+ AS  G   +V  L   GAD + 
Sbjct: 173 GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL 211

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 15/47 (31%), Positives = 26/47 (55%)

Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           L+++   G +++   +  G T L+ A     QE V+ L ERGAD++ 
Sbjct: 98  LLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA 144

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +++ +D   G++ L  A    +  MV+ L + GA+VN 
Sbjct: 137 ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNA 178

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 48.2 bits (116), Expect = 3e-08
 Identities = 16/43 (37%), Positives = 24/43 (55%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +D+   ++N  DD G + L+WA   G   +VE L  RGA +N 
Sbjct: 25  LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV 67

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.6 bits (99), Expect = 7e-06
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             ++N +++ G   L++A  +G  ++ E L   GA V+ 
Sbjct: 95  KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI 133

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.3 bits (98), Expect = 8e-06
 Identities = 12/41 (29%), Positives = 23/41 (56%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G  +N M+    T L+ A++ G +++V+ L +  AD+N 
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA 100

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 8/39 (20%), Positives = 19/39 (48%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G  V+  +  G+  ++ A A   + + E   + G ++N+
Sbjct: 128 GALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR 166

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 3e-08
 Identities = 6/42 (14%), Positives = 14/42 (33%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
               G+++   D  G T L +         ++ + +     N
Sbjct: 140 FSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 6/45 (13%)

Query: 72  GVEVNFMDDVGQTLLNWASAFG------TQEMVEFLCERGADVNK 110
           G ++      G TL       G      T E+ +   E+GAD+  
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITA 109

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 9/60 (15%), Positives = 21/60 (35%), Gaps = 2/60 (3%)

Query: 52  LIECIRSKDTDALIETIDSGGV--EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +         +  +E  + G    E     ++   +L   +     ++  FL  +GAD+ 
Sbjct: 10  VSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK 69

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 48.6 bits (117), Expect = 3e-08
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           ++   +E+N  D  G+T L  A     +++ E LC+RGA  + 
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC 281

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S G +VN  D  G T    A+ +G  + ++FL +RGA+VN 
Sbjct: 93  SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL 133

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 10/39 (25%), Positives = 19/39 (48%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G +       G T    A+  G+ ++++    +GADVN+
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE 100

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 42.1 bits (100), Expect = 8e-06
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFG----TQEMVEFLCERGADVNK 110
           +D  G +VN  D++G+  L  A         + +   L + GADVN 
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
            GG  VNF + + G T L+ A     +++VE L   GAD   
Sbjct: 26  EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 63  ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNK 110
           A +        +   +   G T L  A+  G  E+++ L  E GADVN 
Sbjct: 129 ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA 177

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 40.1 bits (95), Expect = 4e-05
 Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNK 110
           G +VN   + G+T L  A       +V+ L E+   ++N 
Sbjct: 209 GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVNK 110
              LL  A      ++V+ L E GA+VN 
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNF 33

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 46.2 bits (111), Expect = 3e-08
 Identities = 18/42 (42%), Positives = 24/42 (57%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
             G +VN  D  G+T L+ A+  G  E+V+ L E GADVN  
Sbjct: 23  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 38.9 bits (92), Expect = 2e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G+T L+ A+  G  E+V+ L E GADVN 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA 30

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 35.4 bits (83), Expect = 5e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
             G +VN  D  G+T L+ A+  G  E+V+ L E GA
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 6e-08
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           SG +        G T L+ A+A G  E+++ L +   DVN 
Sbjct: 187 SGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNI 227

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 4e-07
 Identities = 14/41 (34%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G ++N+ +  G T L+ A      +MV+FL E GA++N+
Sbjct: 61  ERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ 101

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.0 bits (105), Expect = 1e-06
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               +VN  D  G T L+ A+ +G +E    L E   D+  
Sbjct: 220 QARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEA 260

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G  +N  D+ G   L+ A++ G  ++ E+L  +GA V  
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA 134

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%)

Query: 65  IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +E       +     D G   L  A + G  E V  L ERGAD+N 
Sbjct: 24  LEPPVVKRKKTKVKFDDGAVFL-AACSSGDTEEVLRLLERGADINY 68

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 47.9 bits (115), Expect = 7e-08
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S G+      + G T L+ AS  G   +V+ L +RGA  N 
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV 42

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 16/41 (39%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             GV V+    +G T L+ AS +G  ++V+FL +  ADVN 
Sbjct: 299 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA 339

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 11/41 (26%), Positives = 14/41 (34%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                 N     G T L+ A+  G  E V  L E+ A    
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC 141

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
           G   N     G T L+ A+  G  EMV  L  + A+ N G
Sbjct: 235 GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.8 bits (107), Expect = 8e-07
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                 N     G T L+ A      ++V+ L  RG   + 
Sbjct: 167 ERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 207

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                   M   G T L+ A+ +G   + E L ER A  N 
Sbjct: 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G   N  +   +T L+ A+  G  E+ ++L +  A VN 
Sbjct: 35  QRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 18/39 (46%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             +VN      QT L+ A+  G   MV+ L E  A+ N 
Sbjct: 70  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL 108

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 9/41 (21%), Positives = 14/41 (34%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G   +     G T L+ A+     E+   L + G   N 
Sbjct: 200 PRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA 240

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 8/39 (20%), Positives = 15/39 (38%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               N  +  G T L+  +  G   + + L + G  V+ 
Sbjct: 268 QANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 306

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.9 bits (102), Expect = 4e-06
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               +VN    +G + L+ A+  G  ++V  L + GA  N+
Sbjct: 332 QHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 372

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 46.6 bits (112), Expect = 9e-08
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 1/43 (2%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +    V  + ++  G+T L     FG+  +   L ++GA  N 
Sbjct: 22  LHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNV 63

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 41.2 bits (98), Expect = 7e-06
 Identities = 13/39 (33%), Positives = 20/39 (51%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G   N  D  G + ++ A+  G  + ++ L E GADVN 
Sbjct: 58  GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.9 bits (92), Expect = 5e-05
 Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN  D  G   ++ A   G   +V FL    +D+++
Sbjct: 89  EHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHR 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 47.5 bits (114), Expect = 9e-08
 Identities = 16/59 (27%), Positives = 29/59 (49%)

Query: 52  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           L+E  RS + + L+  +    V  +  D    T L+ A+ +    +V+ L + GADV+ 
Sbjct: 28  LLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA 86

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 43.3 bits (103), Expect = 3e-06
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G  VN  +    T L+ A+     +++E L + GA +N 
Sbjct: 237 GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA 275

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +V+  D  G   L+ A ++G  E+ E L + GA VN 
Sbjct: 79  QHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA 119

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G  VN MD    T L+ A++    E+   L   GAD   
Sbjct: 114 GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTL 152

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 12/41 (29%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G ++N +D +GQT L+ A+  G  +    L   G+D + 
Sbjct: 268 KHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI 308

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.0 bits (92), Expect = 9e-05
 Identities = 4/42 (9%), Positives = 14/42 (33%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNK 110
               +     +  +  LL  A +   ++++  L     + + 
Sbjct: 12  DPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA 53

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 4/62 (6%)

Query: 52  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQ---EMVEFLCERGADV 108
           L++  R  D   + +T+    +         +T L+ A A       ++ E L  +GA+V
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFK-QPQSHETALHCAVASLHPKRKQVAELLLRKGANV 240

Query: 109 NK 110
           N+
Sbjct: 241 NE 242

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 45.8 bits (110), Expect = 9e-08
 Identities = 17/41 (41%), Positives = 23/41 (56%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S G +VN     G T L+ A+  G  E+V+ L  +GADVN 
Sbjct: 30  SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNA 70

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 41.6 bits (99), Expect = 3e-06
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + G +VN     G T  + A   G  E+V+ L  +GADVN 
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNA 103

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 38.5 bits (91), Expect = 6e-05
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 79  DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
              G T L+ A+  G  E V+ L  +GADVN 
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA 37

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 46.2 bits (111), Expect = 1e-07
 Identities = 16/41 (39%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                +N  D+ G T L WA+A G   +VEFL + GAD   
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL 64

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.3 bits (106), Expect = 7e-07
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             GV+VN  D  G T L +A      + V+ L E GAD   
Sbjct: 90  DCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI 130

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 43.1 bits (103), Expect = 1e-06
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +   +    ++ L+ A + G  ++V+ L + G DVN+
Sbjct: 57  QNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE 97

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.4 bits (96), Expect = 2e-05
 Identities = 6/41 (14%), Positives = 15/41 (36%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +     D G   ++ A A G + + + +      + +
Sbjct: 123 ESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQ 163

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 36.2 bits (85), Expect = 5e-04
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVNK 110
               ++  +A G    +    E+   +N 
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINH 31

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 46.5 bits (111), Expect = 2e-07
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               + +  ++ G T L+ A       +V+FL   GA+VN 
Sbjct: 42  KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNS 82

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.3 bits (108), Expect = 4e-07
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + G  VN  D  G T L+ A++     +   L + GA +  
Sbjct: 75  TAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFA 115

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 3/45 (6%)

Query: 70  SGGVEVNFMDDV---GQTLLNWASAFGTQEMVEFLCERGADVNKG 111
                             LL  A+  G  E+V+   +   D ++ 
Sbjct: 6   RKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQP 50

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 46.3 bits (111), Expect = 2e-07
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               +V+ +D  G T LN A      E+ + L +RGAD+N 
Sbjct: 27  DTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL 67

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 5/48 (10%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAF-----GTQEMVEFLCERGADVNK 110
           ++ G  +++F +D G T L  A          Q++V+ L E GAD + 
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI 173

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVNK 110
           +     ++N  +  G   L  A+  G  + V+ L E G  D++ 
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDF 135

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 7/32 (21%), Positives = 14/32 (43%)

Query: 79  DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                 LL  A+   T+++ E L +    V++
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDE 34

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 9/42 (21%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK 110
             G ++N  + +  +   +A A G  E++ ++ +    D+NK
Sbjct: 60  DRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK 101

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 45.1 bits (108), Expect = 2e-07
 Identities = 15/41 (36%), Positives = 26/41 (63%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + G +VN   + G+  L++A+  G  E++EFL  +GAD+N 
Sbjct: 28  AKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 41.6 bits (99), Expect = 3e-06
 Identities = 12/41 (29%), Positives = 16/41 (39%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G ++N  D    T L  A   G    V+ L  +GAD   
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV 101

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 38.9 bits (92), Expect = 4e-05
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVNK 110
                 WA   G  + V+    +G DVN+
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVNR 35

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 46.6 bits (110), Expect = 2e-07
 Identities = 15/78 (19%), Positives = 27/78 (34%)

Query: 32  IEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA 91
           ++ +       T +  +        R       ++        +N  D  G T LN A+ 
Sbjct: 233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAAR 292

Query: 92  FGTQEMVEFLCERGADVN 109
            G   +V+ L + GAD  
Sbjct: 293 LGNISIVDALLDYGADPF 310

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.4 bits (107), Expect = 6e-07
 Identities = 10/49 (20%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 62  DALIETIDSGGVEVNF-MDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             + +   +  + +N  +D+ G T L+W ++    E+V+ L + G++  
Sbjct: 110 QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL 158

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + +G ++VN  DD G T + WA+ +   ++V+ L  +G+D+N 
Sbjct: 97  LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI 139

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.9 bits (105), Expect = 1e-06
 Identities = 7/41 (17%), Positives = 18/41 (43%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +   +++ ++  G + L+ A+     + V     R +DV  
Sbjct: 165 AAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTL 205

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G  ++   +  +T L  A+     E V++L + GA V+ 
Sbjct: 32  QAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP 72

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 43.2 bits (103), Expect = 3e-06
 Identities = 11/41 (26%), Positives = 20/41 (48%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S G ++N  D+     L+WA+  G  ++ E L     D++ 
Sbjct: 132 SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA 172

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 42.0 bits (100), Expect = 7e-06
 Identities = 6/38 (15%), Positives = 17/38 (44%)

Query: 73  VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +         ++ L+ A+  G  ++   L + GA+++ 
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT 39

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 39.7 bits (94), Expect = 4e-05
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK 110
             G  V+  D  G T L+ A+  G  E+V++L   G  DVN 
Sbjct: 65  KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC 106

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.6 bits (107), Expect = 3e-07
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN  D  G+T L+ A+  G  E+V+ L E GADVN 
Sbjct: 23  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 44.3 bits (106), Expect = 4e-07
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN  D  G+T L+ A+  G  E+V+ L E GADVN 
Sbjct: 56  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 96

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.9 bits (92), Expect = 4e-05
 Identities = 14/29 (48%), Positives = 19/29 (65%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G+T L+ A+  G  E+V+ L E GADVN 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNA 30

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 36.2 bits (85), Expect = 4e-04
 Identities = 15/37 (40%), Positives = 21/37 (56%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
             G +VN  D  G+T L+ A+  G  E+V+ L E GA
Sbjct: 89  EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 45.9 bits (110), Expect = 3e-07
 Identities = 14/43 (32%), Positives = 20/43 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
           + G  ++       T L  A     +  V+ L E GADVN+GK
Sbjct: 178 AYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 13/41 (31%), Positives = 18/41 (43%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S G  VN +     + L+ A   G    V+ L + GA VN 
Sbjct: 80  SQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG 120

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.9 bits (102), Expect = 3e-06
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
           G +VN +     T L  A   G+ + V  L + GA V    
Sbjct: 115 GAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 4e-05
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN       + L+      ++E+   L + GAD   
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQA 250

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G  V    D   + ++ A+  G  E V  L   G +++ 
Sbjct: 146 QHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDH 185

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 2/41 (4%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S  +  + +     + ++ A+  G Q  +  L  +G  VN 
Sbjct: 49  SNPLMGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNI 87

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 45.5 bits (109), Expect = 4e-07
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +V   D    TLL+WA+     ++V++   +GA V++
Sbjct: 30  EAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQ 70

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.7 bits (107), Expect = 7e-07
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G + + +D  G + ++ A+ FG   +V +L  +G DV+ 
Sbjct: 97  KYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM 137

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 44.3 bits (106), Expect = 1e-06
 Identities = 10/36 (27%), Positives = 16/36 (44%)

Query: 75  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +  +DD     +  A+ +G  E    L E G DV +
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ 37

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 3e-06
 Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S G  V+ +  D+  T L+WA+  G   MV  L + GAD + 
Sbjct: 63  SKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSL 104

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 41.3 bits (98), Expect = 1e-05
 Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFG-TQEMVEFLCERGADVNK 110
           + G +V+ MD  G T L WA+    + +    L      VN 
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL 171

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +  V VN  D     T L+WA   G   ++  L E GA+V+ 
Sbjct: 164 TFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDA 205

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 8/41 (19%), Positives = 14/41 (34%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G  V+  +  G++ L+ A       M+  L E       
Sbjct: 198 EAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGY 238

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 44.7 bits (107), Expect = 4e-07
 Identities = 11/43 (25%), Positives = 21/43 (48%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                V    ++    T L++A+ +    +VE+L + GADV+ 
Sbjct: 28  CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA 70

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 41.6 bits (99), Expect = 6e-06
 Identities = 14/41 (34%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +V+  D  G   L+ A ++G  E+ E L + GA VN 
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV 103

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G  VN  D    T L+ A+A G  E+ + L + GAD  K
Sbjct: 96  KHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK 136

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
           + G+ V F + +   LL  +S  G  ++V+ +     D +  
Sbjct: 26  AHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLP 66

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 15/41 (36%), Positives = 21/41 (51%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             GV VN  D  G T L+ A++    ++ +FL E GA V  
Sbjct: 91  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFA 131

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 42.6 bits (101), Expect = 4e-06
 Identities = 13/42 (30%), Positives = 21/42 (50%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
               + +  +D G T L+ A   G  E+V+FL + G +VN  
Sbjct: 58  YEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA 99

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 6/35 (17%), Positives = 9/35 (25%)

Query: 79  DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGKL 113
           +  GQ  L        ++        G  V    L
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPL 36

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 45.6 bits (109), Expect = 5e-07
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
            D   +     DD     ++ A+  G  + V  L E G     
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI 48

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 44.5 bits (106), Expect = 1e-06
 Identities = 10/48 (20%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 64  LIET-IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +++T      + +++ +  G + L+WA     +++     E G DVN 
Sbjct: 192 MMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 2e-06
 Identities = 5/41 (12%), Positives = 7/41 (17%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               EV    + G              +        A V  
Sbjct: 311 EKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 10/55 (18%), Positives = 21/55 (38%)

Query: 56  IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           ++  D   +       G  V     V    +  A+    QE+++ L E+  +V +
Sbjct: 264 LQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR 318

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.4 bits (98), Expect = 2e-05
 Identities = 10/40 (25%), Positives = 16/40 (40%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             GV     +  G T L+ A  FG  +  ++L   G   +
Sbjct: 41  ETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHS 80

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 6/42 (14%), Positives = 14/42 (33%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
             G++VN  D+     L  +       + + L ++       
Sbjct: 232 EMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQ 273

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 52  LIECIRSKDTDALIETIDSGGVEV-----NFMDDVGQTLLNWASAFGTQ--EMVEFLCER 104
           L+E  + +         +    EV     +     GQT L+W    G +  EM++ L + 
Sbjct: 103 LVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162

Query: 105 GADVNK 110
           GA    
Sbjct: 163 GASPTA 168

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.8 bits (107), Expect = 5e-07
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             +V+ +D+ G+T L + +  G+ + V  L E GAD++
Sbjct: 66  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 103

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 39.4 bits (93), Expect = 5e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADVN 109
             G +++  D   G T L+ A+ +   E+VE L E GAD+ 
Sbjct: 97  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 137

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 7/40 (17%), Positives = 12/40 (30%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             G ++   D+ G T L  A             + G  + 
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 170

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             +V+ +D+ G+T L + +  G+ + V  L E GAD++
Sbjct: 67  DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD 104

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 40.3 bits (95), Expect = 3e-05
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             G +++  D   G T L+ A+ +   E+VE L E GAD+ 
Sbjct: 98  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE 138

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 7/40 (17%), Positives = 12/40 (30%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             G ++   D+ G T L  A             + G  + 
Sbjct: 132 ELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIG 171

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 44.9 bits (107), Expect = 6e-07
 Identities = 11/43 (25%), Positives = 22/43 (51%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                +E+N  + +G T L+ A+  G  ++V+ L  +GA  + 
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL 168

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNK 110
              V VN +D  G T L WA   G +++VE L  +   ++N+
Sbjct: 94  DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ 135

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 6/39 (15%), Positives = 11/39 (28%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
              V    +     L+ A+  G    +    +    VN 
Sbjct: 63  SNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG 101

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.2 bits (92), Expect = 7e-05
 Identities = 3/40 (7%), Positives = 12/40 (30%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           + G   +  +   +   + A+      +++      A   
Sbjct: 161 AKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 44.0 bits (105), Expect = 7e-07
 Identities = 6/40 (15%), Positives = 15/40 (37%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             G  ++  D  G+  ++ A   G +++  +L        
Sbjct: 99  RAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR 138

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 42.1 bits (100), Expect = 4e-06
 Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G   N  +  G+  +      G+  + E L   GA+ N 
Sbjct: 33  EAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNC 72

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.2 bits (95), Expect = 2e-05
 Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 72  GVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNK 110
           G E N  D    T  ++ A+  G  + +  L   GA ++ 
Sbjct: 67  GAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV 106

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 39.0 bits (92), Expect = 5e-05
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 79  DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
            +     L  A+A G  E V  L E GA+ N 
Sbjct: 9   MEPSADWLATAAARGRVEEVRALLEAGANPNA 40

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 4/61 (6%)

Query: 50  LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
            +  E +   +    I    + G +VN MD    T L  A     + +V +L + GAD  
Sbjct: 138 AEKSEDLIVHEAKECI----AAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT 193

Query: 110 K 110
            
Sbjct: 194 I 194

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 44.2 bits (105), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 22/43 (51%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +   G   +  D+ G+T +  A+  G  E+V +L ++GA V  
Sbjct: 299 VGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 341

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 41.9 bits (99), Expect = 9e-06
 Identities = 5/49 (10%), Positives = 15/49 (30%), Gaps = 1/49 (2%)

Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
           L +   +        +      L+   A G+  + E +     ++   +
Sbjct: 76  LGDFNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNIIDPR 123

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.9 bits (94), Expect = 4e-05
 Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 3/44 (6%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL---CERGADVNK 110
             G +    +   ++ L+ A+A     M+ ++    +   D+ +
Sbjct: 187 KAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE 230

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.2 bits (92), Expect = 9e-05
 Identities = 7/39 (17%), Positives = 11/39 (28%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 108
             G  V  +D    T    A A     +V+       + 
Sbjct: 334 QQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 3/39 (7%), Positives = 8/39 (20%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             + N +              G   + +F         +
Sbjct: 51  KRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTE 89

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL-CERGADVNK 110
            G    +     G+T L++A+      +V++L  E+G++ +K
Sbjct: 267 DGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMV---EFLCERGADVNKG 111
             ++  +D  G T L   +    ++ V   + L E+GA V+  
Sbjct: 225 KGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYD 267

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 43.9 bits (105), Expect = 9e-07
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G   +  D  G  +++ A+  G  + ++ L E  ADVN 
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI 98

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 42.0 bits (100), Expect = 5e-06
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
              V VN  +  G+T L      G  E+   L  RGA+ + 
Sbjct: 26  QNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDL 65

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 40.4 bits (96), Expect = 1e-05
 Identities = 9/33 (27%), Positives = 14/33 (42%)

Query: 78  MDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           M +     L  A+A G  E +  L +   +VN 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNA 33

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 38.9 bits (92), Expect = 6e-05
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK 110
               +VN  D+ G   L+ A+  G   +VEFL +  A +V  
Sbjct: 91  EFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGH 132

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 37.0 bits (87), Expect = 3e-04
 Identities = 9/39 (23%), Positives = 15/39 (38%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA 106
           +      V   +  G T  + A  +G  E+V  +   GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 9/39 (23%), Positives = 13/39 (33%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             +    D  G +   +A A     +V  L   GA  N 
Sbjct: 21  SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL 59

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 9/41 (21%), Positives = 18/41 (43%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G++ +  DD G T L +A   G  + V+   ++   +  
Sbjct: 83  FSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF 123

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 2/41 (4%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + G   N ++   +  L+ A+     ++V+ L   G D ++
Sbjct: 52  NAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQ 90

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 5/40 (12%), Positives = 13/40 (32%), Gaps = 1/40 (2%)

Query: 72  GVEVNFMDDVGQT-LLNWASAFGTQEMVEFLCERGADVNK 110
               N  + +     +  A      EM++ L +   ++  
Sbjct: 184 MTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYS 223

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 4/32 (12%), Positives = 11/32 (34%)

Query: 79  DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             +  + ++     G  +M+  L +     N 
Sbjct: 158 LAILLSCIHITIKNGHVDMMILLLDYMTSTNT 189

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 5/44 (11%), Positives = 9/44 (20%), Gaps = 1/44 (2%)

Query: 70  SGGVEVNFMDDVG-QTLLNWASAFGTQEMVEFLCERGADVNKGK 112
                + F    G +T    A       +V +            
Sbjct: 116 KKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLA 159

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.9 bits (105), Expect = 1e-06
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN +D  G T L  A+ FG  E+VE L + GADVN 
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA 108

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.9 bits (105), Expect = 1e-06
 Identities = 19/41 (46%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN  D  G T L+ A+ FG  E+VE L + GADVN 
Sbjct: 101 KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA 141

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 18/41 (43%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + G +VN  D  G T L+ A+  G  E+VE L + GADVN 
Sbjct: 35  ANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA 75

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 36.6 bits (86), Expect = 4e-04
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVNK 110
               L  A+  G  + V  L   GADVN 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVNA 42

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.4 bits (106), Expect = 1e-06
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           I +   +++     G T L  A+    + M+E L    ADVN 
Sbjct: 110 IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 152

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G   +  ++  +T L  A+  G+ E  + L +  A+ + 
Sbjct: 178 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 218

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 41.7 bits (99), Expect = 8e-06
 Identities = 12/40 (30%), Positives = 24/40 (60%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +   +VN +DD+G++ L+WA+A    +    L + GA+ +
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD 184

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 38.6 bits (91), Expect = 1e-04
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 70  SGGVEV-NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G  + N  D  G+T L+ A+ +   +  + L E  AD N 
Sbjct: 44  YQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI 85

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 4/40 (10%), Positives = 11/40 (27%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
                 +  D + +   + A      ++V  L       +
Sbjct: 211 DHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVN 109
               + N  D++G+T L+ A +   Q + + L    A D++
Sbjct: 78  EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD 118

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.1 bits (104), Expect = 1e-06
 Identities = 14/41 (34%), Positives = 20/41 (48%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +        D   +T L+WA + G  E+VEFL + G  VN 
Sbjct: 28  ADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 11/101 (10%), Positives = 27/101 (26%), Gaps = 2/101 (1%)

Query: 9   IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETI 68
               D       H  AA      +      K     + +     +     ++     + +
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 69  DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
            + G  +   +   +T L  A   G   ++      G + +
Sbjct: 192 VTQGASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 39.9 bits (93), Expect = 4e-05
 Identities = 17/102 (16%), Positives = 31/102 (30%)

Query: 9   IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETI 68
           +   +     P H  A+ N+            +   K       +    +K    ++  +
Sbjct: 99  VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

Query: 69  DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                  N  D  G T L+ A      E  +FL  +GA +  
Sbjct: 159 LFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 18/90 (20%), Positives = 31/90 (34%)

Query: 21  HCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDD 80
           H  A+   +  ++       H      N    +    SK+   +   +  GG   +  D 
Sbjct: 78  HIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

Query: 81  VGQTLLNWASAFGTQEMVEFLCERGADVNK 110
              T ++ A+A G  +MV  L    A  N 
Sbjct: 138 YDATAMHRAAAKGNLKMVHILLFYKASTNI 167

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             GV VN  DD G + L+ A++ G  E+V+ L  +GA VN 
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA 101

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 36.4 bits (84), Expect = 6e-04
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVNK 110
              + N A +    E+ E +    +   +
Sbjct: 7   NIMICNLAYSGKLDELKERILADKSLATR 35

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.9 bits (105), Expect = 1e-06
 Identities = 8/41 (19%), Positives = 18/41 (43%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G   +  ++  +T L  A+  G+ E  + L +  A+ + 
Sbjct: 146 KNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDI 186

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           I +   +++     G T L  A+    + M+E L    ADVN 
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA 120

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 12/41 (29%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +   +VN +DD+G++ L+WA+A    +    L + GA+ + 
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM 153

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.9 bits (92), Expect = 7e-05
 Identities = 5/39 (12%), Positives = 12/39 (30%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               +  D + +   + A      ++V  L E     + 
Sbjct: 181 FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSP 219

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 38.9 bits (92), Expect = 9e-05
 Identities = 11/35 (31%), Positives = 17/35 (48%)

Query: 76  NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           N  D  G+T L+ A+ +   +  + L E  AD N 
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANI 53

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 10/42 (23%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGA-DVNK 110
               + N  D++G+T L+ A +   Q + + L    A D++ 
Sbjct: 46  EASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA 87

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 25/41 (60%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + G +VN  D+ G T L  A+A G  E+VE L + GADVN 
Sbjct: 35  ANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 42.0 bits (100), Expect = 4e-06
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN +D +G T L+ A+  G  E+ E L + GADVN 
Sbjct: 68  KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA 108

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 19/39 (48%), Positives = 22/39 (56%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G  VN  D  G+T L W+  FG  EM  FL E GA+VN 
Sbjct: 91  GSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND 129

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 43.1 bits (103), Expect = 2e-06
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               ++   D  G T L WA       + E L  +G++VN 
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT 96

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 3e-06
 Identities = 16/40 (40%), Positives = 23/40 (57%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             G  VN  +  G+T L  AS +G  E+V+ L E GAD++
Sbjct: 122 EHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS 161

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.0 bits (100), Expect = 5e-06
 Identities = 8/43 (18%), Positives = 17/43 (39%), Gaps = 2/43 (4%)

Query: 70  SGGVEV--NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +  ++   N+ D   +T L  A   G +  ++ L E    +  
Sbjct: 21  NQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED 63

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.8 bits (102), Expect = 2e-06
 Identities = 17/41 (41%), Positives = 24/41 (58%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN  D +  T L+WA+    QE+VE L + GADV+ 
Sbjct: 88  KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHT 128

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 42.0 bits (100), Expect = 4e-06
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             GV  +    V +T L+ A++ G   +VE L + GADVN 
Sbjct: 55  RAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNA 95

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.1 bits (90), Expect = 9e-05
 Identities = 7/31 (22%), Positives = 9/31 (29%)

Query: 82  GQTLLNWASAFGTQEMVEFLCERGADVNKGK 112
               L  A+  G  + V  L   GA      
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTTDW 32

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.1 bits (90), Expect = 1e-04
 Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + G      D +G + L+ A+ +G     E L   G   + 
Sbjct: 23  ANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA 62

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 11/41 (26%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S    +   D  G+  L+W+ +F   E+  FL  +  +VN 
Sbjct: 24  SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 42.4 bits (101), Expect = 5e-06
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             ++N + + G T L+ A      E+ +FL E GA V  
Sbjct: 97  KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI 135

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.5 bits (96), Expect = 3e-05
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG-ADVNK 110
             G  V   D   Q  L+ A++ G+ +++E LC  G + VN 
Sbjct: 128 ENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW 169

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNK 110
              G   VN+ D  G T L  A A G  +    L E+ GA+ + 
Sbjct: 160 CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL 203

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 3e-06
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                VN       + L+ A+  G  ++V+ L   GA  N 
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 41.6 bits (99), Expect = 4e-06
 Identities = 14/41 (34%), Positives = 19/41 (46%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G + N  D  G T L+ A   G  ++VE L +  A VN 
Sbjct: 31  QNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNT 71

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.1 bits (95), Expect = 2e-05
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G++    +  G+TLL+ AS  G    VE+L + G+D N 
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV 38

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 41.0 bits (97), Expect = 5e-06
 Identities = 16/39 (41%), Positives = 22/39 (56%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 108
           + G +V   D  G T L+ A+  G  E+V+ L E GADV
Sbjct: 45  ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV 83

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 37.6 bits (88), Expect = 9e-05
 Identities = 11/41 (26%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G  +    D     L  A+  G  + V  L   GADV  
Sbjct: 15  PRGSHMG--SD-LGKKLLEAARAGQDDEVRILMANGADVAA 52

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.5 bits (101), Expect = 6e-06
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 65  IETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
               +   +++   +  G T L+ A      EMV  L + GAD+NK
Sbjct: 141 EPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK 186

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 8/41 (19%), Positives = 12/41 (29%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +       G+T L  A       +   L   GA   +
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G ++N  +   G+T L+ A       ++E L + GAD   
Sbjct: 179 DAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA 220

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 13/37 (35%), Positives = 19/37 (51%)

Query: 74  EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
            ++  +D+GQT L+ A+  G    VE L   GA V  
Sbjct: 37  YLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV 73

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 7/39 (17%), Positives = 11/39 (28%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G  V   +  G T L+ A           L +      +
Sbjct: 68  GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 42.2 bits (100), Expect = 7e-06
 Identities = 12/47 (25%), Positives = 20/47 (42%)

Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +I  +      +NF +++ QT L+ A      E+ E L   G D   
Sbjct: 27  VIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL 73

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 39.1 bits (92), Expect = 8e-05
 Identities = 5/41 (12%), Positives = 14/41 (34%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
             G +VN +   G +         +  + + L +   +  +
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQ 212

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 38.7 bits (91), Expect = 1e-04
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 70  SGGVEVNFMDDV-GQTLLNWASAFGTQEMVEFLCERGADVNK 110
           S G +VN  +   G+T L+ A      ++V  L + GADVN+
Sbjct: 138 SLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR 179

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
              +   +  G T L+ AS  G   +VE L   GADVN
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.1 bits (99), Expect = 7e-06
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 5/62 (8%)

Query: 49  ILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADV 108
           I  L++   ++ TD+L + +             GQT L+ A       +V  L E GADV
Sbjct: 73  IALLLD--VARKTDSLKQFV---NASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV 127

Query: 109 NK 110
             
Sbjct: 128 QA 129

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 75  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
              +   GQT L+ A     +  VE L E+GADV+
Sbjct: 86  FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH 120

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 39.1 bits (92), Expect = 6e-05
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 57  RSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           +  D  AL + +   G EV+    +G+T L+ A+ +   E    L E   ++  
Sbjct: 12  KENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
            +     +      GQT L+ A       +V  L  RGA V+
Sbjct: 61  PELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS 102

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 6/54 (11%)

Query: 56  IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           + ++ T              + +   G+  L++A+  G++E+V  L E GAD+ 
Sbjct: 101 VSARATG------SVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR 148

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 8/38 (21%), Positives = 18/38 (47%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           G  ++     G T L++A+ +   + ++ L +  A V 
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG 253

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 38.1 bits (88), Expect = 2e-04
 Identities = 8/60 (13%), Positives = 21/60 (35%)

Query: 50  LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           L L      + +  +++ +      ++     G T L++       E ++ L    A + 
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE 232

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 37.2 bits (86), Expect = 4e-04
 Identities = 12/65 (18%), Positives = 19/65 (29%), Gaps = 4/65 (6%)

Query: 48  NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
           N   L++ IR   +   I+           +      LL  A   G Q     L    + 
Sbjct: 289 NDEVLLDDIRFLLSIPGIKA----LAPTATIPGDANELLRLALRLGNQGACALLLSIPSV 344

Query: 108 VNKGK 112
           +   K
Sbjct: 345 LALTK 349

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 6/42 (14%), Positives = 11/42 (26%)

Query: 70  SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
           +    V  +          A+  G   ++  LCE        
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 157

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
             +       G + L+ A    + + V+ L E GADV+
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVH 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	113
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.89
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.86
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.84
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.83
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.83
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.83
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.82
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.82
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.82
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.82
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.82
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.82
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.81
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.81
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.81
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.8
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.8
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.79
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.79
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.79
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.79
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.79
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.79
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.78
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.78
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.78
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.78
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.78
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.78
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.77
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.77
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.77
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.77
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.77
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.77
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.77
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.77
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.77
2rfa_A	232	Transient receptor potential cation channel subfa	99.77
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.76
2etb_A	256	Transient receptor potential cation channel subfam	99.76
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.76
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.76
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.76
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.75
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.75
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.75
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.75
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.75
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.74
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.74
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.74
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.74
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.74
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.74
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.74
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.74
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.74
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.74
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.74
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.73
2etb_A	256	Transient receptor potential cation channel subfam	99.73
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.73
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.73
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.73
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.73
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.73
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.72
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.72
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.72
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.72
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.72
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.71
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.71
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.71
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.71
2pnn_A	273	Transient receptor potential cation channel subfa	99.71
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.71
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.71
2rfa_A	232	Transient receptor potential cation channel subfa	99.71
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.7
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.7
2pnn_A	273	Transient receptor potential cation channel subfa	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.7
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.7
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.7
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.69
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.69
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.69
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.69
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.68
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.68
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.68
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.68
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.68
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.67
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.67
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.67
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.66
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.66
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.65
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.65
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.64
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.63
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.62
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.6
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.59
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.59
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.59
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.57
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.47
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.45

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.89  E-value=2.9e-23  Score=121.47  Aligned_cols=105  Identities=23%  Similarity=0.288  Sum_probs=60.9

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..|..|+||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++.|++++.+|..|+||||
T Consensus        29 dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh  108 (169)
T 4gpm_A           29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLH  108 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            34556666777776655444333333333333333334444444455555555555666666666666666666666666


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|+++|++++.+|
T Consensus       109 ~A~~~g~~~~v~~Ll~~gad~~~~d  133 (169)
T 4gpm_A          109 HAAENGHKEVVKLLISKGADVNTSD  133 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccC
Confidence            6666666666666666666666554

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.88  E-value=2.9e-23  Score=121.45  Aligned_cols=103  Identities=19%  Similarity=0.244  Sum_probs=81.9

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..|..|+||+|+++..++...+..+...+.+++.++..+.+++++|+..+..+++++|++.|++++.+|..|+||||
T Consensus        62 d~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  141 (169)
T 4gpm_A           62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD  141 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             chhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            46678889999999988766666666666666666666666667777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~  110 (113)
                      +|+..|+.+++++|+++|++++-
T Consensus       142 ~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          142 LAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             HHHHTTCHHHHHHHHTC------
T ss_pred             HHHHcCCHHHHHHHHHCCCCcCC
Confidence            99999999999999999999864

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.86  E-value=7.5e-22  Score=104.83  Aligned_cols=93  Identities=22%  Similarity=0.203  Sum_probs=75.3

Q ss_pred             CCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCC
Q psy2938          15 GRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT   94 (113)
Q Consensus        15 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~   94 (113)
                      .|+||+|+++..++...+..+...+...+.++..+.+++++++..+..+++++|++.|++++.+|..|+||||+|+..|+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~   80 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCC
Confidence            37899998876666555555555555555566666677777777777789999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCC
Q psy2938          95 QEMVEFLCERGAD  107 (113)
Q Consensus        95 ~~~v~~Ll~~g~~  107 (113)
                      .+++++|+++|++
T Consensus        81 ~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           81 LEVVKLLLEAGAY   93 (93)
T ss_dssp             HHHHHHHHHTTCC
T ss_pred             HHHHHHHHHcCCC
Confidence            9999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.84  E-value=5.3e-21  Score=107.91  Aligned_cols=102  Identities=15%  Similarity=0.062  Sum_probs=84.3

Q ss_pred             ccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q psy2938          11 TFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS   90 (113)
Q Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~   90 (113)
                      ..|..|+||+|+++..++...+..+...+...+.++..+.+++++++..+..+++++|++.|++++.+|..|.||||+|+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~   84 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAA   84 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHH
Confidence            46788999999988766655555555555555555666666777777777778999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCC
Q psy2938          91 AFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        91 ~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..++.+++++|+++|++++.+|
T Consensus        85 ~~~~~~~v~~Ll~~ga~~~~~~  106 (137)
T 3c5r_A           85 KNGHVDIVKLLLSYGASRNAVN  106 (137)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCCC
Confidence            9999999999999999999876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.83  E-value=8.6e-21  Score=105.31  Aligned_cols=100  Identities=13%  Similarity=-0.018  Sum_probs=77.3

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHc
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAF   92 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~   92 (113)
                      +..+.+|+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|+..
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34567788877765555555544444444554555566667777777777899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCC
Q psy2938          93 GTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        93 ~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++.+++++|+++|++++.+|
T Consensus        84 ~~~~~v~~Ll~~ga~~~~~~  103 (123)
T 3aaa_C           84 GHVSCVKLLLSKGADKTVKG  103 (123)
T ss_dssp             TCHHHHHHHHHTTCCTTCCC
T ss_pred             CCHHHHHHHHHcCCCCCCcC
Confidence            99999999999999998876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.83  E-value=1.5e-20  Score=110.27  Aligned_cols=105  Identities=14%  Similarity=0.175  Sum_probs=87.2

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..+..|+||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.||||
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~  110 (179)
T 3f6q_A           31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLH  110 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            46678889999999988766666666655556666655666666777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..++.+++++|+++|++++.+|
T Consensus       111 ~A~~~~~~~~v~~Ll~~ga~~~~~~  135 (179)
T 3f6q_A          111 YACFWGQDQVAEDLVANGALVSICN  135 (179)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSSBCC
T ss_pred             HHHHcCCHHHHHHHHHCCCCcchhc
Confidence            9999999999999999999998765

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.83  E-value=1.8e-20  Score=108.51  Aligned_cols=105  Identities=24%  Similarity=0.200  Sum_probs=86.9

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..+..|+||+|+++..++...+..+...+...+..+..+.+++++++..+..+++++|++.|++++.+|..|+||||
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  113 (165)
T 3twr_A           34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLH  113 (165)
T ss_dssp             TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHH
Confidence            44556778899999988777666666666666666666666667777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|+++|++++.+|
T Consensus       114 ~A~~~~~~~~v~~Ll~~ga~~~~~~  138 (165)
T 3twr_A          114 EAAAKGKYEICKLLLQHGADPTKKN  138 (165)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccC
Confidence            9999999999999999999998876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.82  E-value=2.2e-20  Score=108.82  Aligned_cols=105  Identities=16%  Similarity=0.164  Sum_probs=86.7

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..+..|+||+|+++..++...+..+...+...+..+..+.++++.++..+..+++++|++.|++++.+|..|.||||
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  107 (172)
T 3v30_A           28 LVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLL  107 (172)
T ss_dssp             GGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             cccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            36677889999999988776666666666555555555666666777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..++.+++++|+++|++++.+|
T Consensus       108 ~A~~~~~~~~v~~Ll~~ga~~~~~~  132 (172)
T 3v30_A          108 YAVRGNHVKCVEALLARGADLTTEA  132 (172)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCccccC
Confidence            9999999999999999999998765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.82  E-value=9.8e-21  Score=117.77  Aligned_cols=105  Identities=18%  Similarity=0.121  Sum_probs=78.1

Q ss_pred             hhhccccCCCchhHHHHHh----------hccCccccccc-----------------------cccchhccccchHHHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAAL----------NQEGNIEYKAH-----------------------TKTHKTFKTSNILQLIE   54 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~   54 (113)
                      +++..|..|+||+|+++..          ..+++++....                       .+...+.++..+.++++
T Consensus        78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~  157 (269)
T 4b93_B           78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLI  157 (269)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            3566788899999987654          34444443321                       23334445555566666


Q ss_pred             HHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          55 CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        55 ~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..+..+++++|++.|++++.++..|+||||+|+..|+.++|++|+++|+|++.+|
T Consensus       158 ~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d  215 (269)
T 4b93_B          158 YACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLN  215 (269)
T ss_dssp             HHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             HHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            6666666678999999999999999999999999999999999999999999998876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.82  E-value=2.7e-21  Score=109.08  Aligned_cols=104  Identities=14%  Similarity=0.036  Sum_probs=76.5

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCC-CChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDV-GQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~-g~tpL   86 (113)
                      +++..+..|.||+|+++..++...+..+...+...+.++..+.+++++++. +..+++++|++.|++++.+|.. |+|||
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L   82 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPV   82 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHH
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHH
Confidence            566778888999988776555555555554455555455555555666666 6667888888888888888887 88888


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+|+..|+.+++++|+++|++++.+|
T Consensus        83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d  108 (136)
T 1d9s_A           83 HDAAREGFLDTLVVLHRAGARLDVCD  108 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHTCCCCCCCS
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            88888888888888888888887765

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.82  E-value=1.1e-20  Score=117.51  Aligned_cols=102  Identities=9%  Similarity=0.033  Sum_probs=79.8

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..|..|+||+|+++..++...+..+...+..++..+..+.+++++|+..+..+++++|++.|++++.+|..|+||||
T Consensus       144 ~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~  223 (269)
T 4b93_B          144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD  223 (269)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGG
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            45667889999999999888888888888888888888888778888888877888999999999999999999999999


Q ss_pred             HHHHcCC-HHHHHHHHHcCCCCC
Q psy2938          88 WASAFGT-QEMVEFLCERGADVN  109 (113)
Q Consensus        88 ~A~~~~~-~~~v~~Ll~~g~~~~  109 (113)
                      +|+.+++ .++++.|...+++++
T Consensus       224 ~A~~~~~i~~lL~~l~~~~~~~~  246 (269)
T 4b93_B          224 CAEQNSKIMELLQVVPSCVASLD  246 (269)
T ss_dssp             GSCTTCHHHHHTTC---------
T ss_pred             HHHhCCcHHHHHHHHHHhchhhh
Confidence            9998775 455555655555443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.82  E-value=1.7e-21  Score=106.99  Aligned_cols=103  Identities=17%  Similarity=0.172  Sum_probs=85.6

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWA   89 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A   89 (113)
                      ...|..|.||+|+++..++-..+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|
T Consensus         3 ~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             -CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            35688999999998877666666666655666666666677777777777778899999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          90 SAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        90 ~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +..++.+++++|+++|++++.++
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHS
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCC
Confidence            99999999999999999987543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.82  E-value=3.5e-20  Score=106.28  Aligned_cols=101  Identities=25%  Similarity=0.276  Sum_probs=83.2

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA   91 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~   91 (113)
                      .+..|.||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.||||+|+.
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~  109 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHH
Confidence            46779999999887776666666666666555556656666666666666679999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCC
Q psy2938          92 FGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        92 ~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .++.+++++|+++|++++.+|
T Consensus       110 ~~~~~~v~~Ll~~ga~~~~~~  130 (153)
T 1awc_B          110 HNHQEVVELLIKYGADVHTQS  130 (153)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCHHHHHHHHHcCCCccccC
Confidence            999999999999999998775

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.81  E-value=5e-20  Score=107.22  Aligned_cols=105  Identities=24%  Similarity=0.255  Sum_probs=85.0

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..+..|.||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.||||
T Consensus        39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  118 (169)
T 2y1l_E           39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLH  118 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            45667889999999988766655555555555555555555666666676666778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..++.+++++|+++|++++.+|
T Consensus       119 ~A~~~~~~~~v~~Ll~~g~~~~~~~  143 (169)
T 2y1l_E          119 LAAMFGHLEIVEVLLKNGADVNAQD  143 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            9999999999999999999998765

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.81  E-value=3.9e-20  Score=114.66  Aligned_cols=105  Identities=10%  Similarity=0.031  Sum_probs=84.1

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhcccc-chHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTS-NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      .++..+..|.||+|+++..++...+..+...+...+..+. .+.+++++|+..+..+++++|++.|++++.+|..|.|||
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL  229 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPL  229 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHH
Confidence            4567788999999998876665555555555555554443 255555666666666899999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+|+..++.+++++|+++|++++.+|
T Consensus       230 ~~A~~~~~~~~v~~Ll~~ga~~~~~~  255 (282)
T 1oy3_D          230 GSALLRPNPILARLLRAHGAPEPEDG  255 (282)
T ss_dssp             HHHHTSSCHHHHHHHHHTTCCCCCCC
T ss_pred             HHHHHcCCcHHHHHHHHcCCCcCcCC
Confidence            99999999999999999999999876

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.81  E-value=3.4e-20  Score=107.60  Aligned_cols=105  Identities=23%  Similarity=0.196  Sum_probs=85.1

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..+..|+||+|+++..++...+..+...+...+..+..+.++++.++..+..+++++|++.|++++.+|..|.||||
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  107 (167)
T 3v31_A           28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLL  107 (167)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHH
Confidence            46677889999999988776666666655555555555555556666666666667999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|+++|++++.+|
T Consensus       108 ~A~~~~~~~~v~~Ll~~g~~~~~~~  132 (167)
T 3v31_A          108 YAVHGNHVKCVKMLLESGADPTIET  132 (167)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            9999999999999999999998765

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.80  E-value=4.3e-20  Score=109.34  Aligned_cols=60  Identities=27%  Similarity=0.202  Sum_probs=30.5

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        52 ~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      ++++|+..+..+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus       104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  163 (192)
T 2rfm_A          104 PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR  163 (192)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCB
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            333333333334555555555555555555555555555555555555555555555443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.80  E-value=8.4e-20  Score=108.09  Aligned_cols=104  Identities=26%  Similarity=0.235  Sum_probs=88.8

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      ++..|..|+||+|+++..++...+..+...+......+..+.+++++|+..+..+++++|++.|++++.+|..|.||||+
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  107 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMW  107 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHH
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Confidence            45678999999999998887777776666666666666666677777777777789999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..++.+++++|+++|++++.+|
T Consensus       108 A~~~~~~~~v~~Ll~~g~~~~~~~  131 (192)
T 2rfm_A          108 SIIFGYSEMSYFLLEHGANVNDRN  131 (192)
T ss_dssp             HHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCC
Confidence            999999999999999999998775

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.79  E-value=6.5e-21  Score=109.75  Aligned_cols=103  Identities=9%  Similarity=0.113  Sum_probs=61.3

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHH-HHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQ-LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      ++..+..|+||+|++. .++...+..+...+...+.++..+.+ ++++|+..+..+++++|++.|++++.+|..|.||||
T Consensus        38 ~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  116 (156)
T 1bi7_B           38 PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD  116 (156)
T ss_dssp             TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHH
T ss_pred             CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            4455666777766542 22222222222333333333444443 555555555556888888888888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..++.+++++|+++|++++.++
T Consensus       117 ~A~~~~~~~~v~~Ll~~ga~~~~~~  141 (156)
T 1bi7_B          117 LAEELGHRDVARYLRAAAGGTRGSN  141 (156)
T ss_dssp             HHHHHTCHHHHHHHSSCC-------
T ss_pred             HHHHhCHHHHHHHHHHcCCCCCccC
Confidence            8888888888888888888887654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.79  E-value=7.4e-20  Score=110.56  Aligned_cols=103  Identities=15%  Similarity=0.099  Sum_probs=85.6

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhC-CCCccccCCCCChHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSG-GVEVNFMDDVGQTLLNW   88 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~d~~g~tpL~~   88 (113)
                      +..+..|.||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++. |++++.+|..|+||||+
T Consensus        67 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~  146 (222)
T 3ehr_A           67 AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHA  146 (222)
T ss_dssp             HHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHH
T ss_pred             cccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHH
Confidence            34567789999998877766666666656666666666677777777777777899999998 99999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..|+.+++++|+++|++++.+|
T Consensus       147 A~~~~~~~~v~~Ll~~ga~~~~~~  170 (222)
T 3ehr_A          147 AAWKGYADIVQLLLAKGARTDLRN  170 (222)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSCCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccc
Confidence            999999999999999999998876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.79  E-value=2.2e-19  Score=110.43  Aligned_cols=105  Identities=13%  Similarity=0.054  Sum_probs=81.4

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..+..|.||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.||||
T Consensus       116 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~  195 (253)
T 1yyh_A          116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF  195 (253)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            45566777888888877666655555555555555555665556666666555667999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|+++|++++.+|
T Consensus       196 ~A~~~~~~~~v~~Ll~~ga~~~~~d  220 (253)
T 1yyh_A          196 LAAREGSYETAKVLLDHFANRDITD  220 (253)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHCCCHHHHHHHHHcCCCccccc
Confidence            9999999999999999999988765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.79  E-value=7.6e-20  Score=103.12  Aligned_cols=100  Identities=22%  Similarity=0.223  Sum_probs=65.4

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHc
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAF   92 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~   92 (113)
                      ...+.||+|+|+..++-..+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.||||+|+..
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc
Confidence            34456677766655555555544444444444444444555555555555677777777888887777888888888888


Q ss_pred             CCHHHHHHHHHcCCCCCCCC
Q psy2938          93 GTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        93 ~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++.+++++|+++|++++.+|
T Consensus        91 ~~~~~v~~Ll~~g~~~~~~~  110 (136)
T 2jab_A           91 GHLEIAEVLLKHGADVNAQD  110 (136)
T ss_dssp             TCHHHHHHHHHTTCCTTCCC
T ss_pred             CCHHHHHHHHHcCCCCcCcC
Confidence            88888888888888777654

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.79  E-value=5.9e-20  Score=108.26  Aligned_cols=100  Identities=19%  Similarity=0.186  Sum_probs=81.9

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCChHHHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWAS   90 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d-~~g~tpL~~A~   90 (113)
                      .+..|.||+|+++..++...+..+.. +...+..+..+.+++++|+..+..+++++|++.|++++.++ ..|+||||+|+
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~  118 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  118 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            35678899999887766666665555 55555566666666666666666689999999999999998 89999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCC
Q psy2938          91 AFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        91 ~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..|+.+++++|+++|++++.+|
T Consensus       119 ~~~~~~~v~~Ll~~ga~~~~~d  140 (183)
T 3deo_A          119 GYVRPEVVEALVELGADIEVED  140 (183)
T ss_dssp             HTTCHHHHHHHHHHTCCTTCCC
T ss_pred             hcCcHHHHHHHHHcCCCCcCCC
Confidence            9999999999999999999876

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.79  E-value=1.5e-20  Score=106.01  Aligned_cols=99  Identities=9%  Similarity=0.117  Sum_probs=75.7

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccc-hHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSN-ILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      +++..+..|+||+|+++. ++...+..+...+...+.++.. +.+++++|+..+..+++++|++.|++++.+|..|.|||
T Consensus        37 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl  115 (136)
T 1d9s_A           37 DPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPV  115 (136)
T ss_dssp             CTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHH
T ss_pred             CcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHH
Confidence            456678889999988765 4444444444444444444554 45555555555566799999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      |+|+..++.+++++|+++|+|
T Consensus       116 ~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A          116 DLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             HHHHHHTCHHHHHHHHHHHCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCC
Confidence            999999999999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.78  E-value=1.5e-19  Score=110.52  Aligned_cols=99  Identities=15%  Similarity=0.085  Sum_probs=78.2

Q ss_pred             cCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcC
Q psy2938          14 VGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFG   93 (113)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~   93 (113)
                      ..+.||+|.++..++-..+..+...+...+..+..+.+++++|+..++.+++++|++.|++++.+|..|+||||+|+..|
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  114 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN  114 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            45688888887766666666666555555555666666666666666667999999999999999999999999999999


Q ss_pred             CHHHHHHHHHcCCCCCCCC
Q psy2938          94 TQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        94 ~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +.+++++|+++|++++.++
T Consensus       115 ~~~~v~~Ll~~ga~~~~~~  133 (239)
T 1ycs_B          115 NVQVCKFLVESGAAVFAMT  133 (239)
T ss_dssp             CHHHHHHHHHTTCCTTCCC
T ss_pred             CHHHHHHHHHcCCCcceec
Confidence            9999999999999998765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.78  E-value=4.1e-19  Score=98.30  Aligned_cols=99  Identities=21%  Similarity=0.205  Sum_probs=66.8

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      ++..+..|.||+|+++..++...+..+...+.....++..+.+++++++..+..+++++|++.|++++.+|..|.||||+
T Consensus        28 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~  107 (126)
T 1n0r_A           28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL  107 (126)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            44566677888887765554444444444444444444445555555555555667888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHcCCC
Q psy2938          89 ASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~  107 (113)
                      |+..++.+++++|+++|+|
T Consensus       108 A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A          108 AARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHTTCHHHHHHHHHHTCC
T ss_pred             HHHcCcHHHHHHHHHcCCC
Confidence            8888888888888888775

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.78  E-value=1.1e-19  Score=111.43  Aligned_cols=99  Identities=19%  Similarity=0.187  Sum_probs=82.2

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCChHHHHHHH
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASA   91 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d-~~g~tpL~~A~~   91 (113)
                      +..|.||+|+++..++-..+..+.. +...+.++..+.+++++|+..++.+++++|++.|++++.++ ..|+||||+|+.
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            4578899999987777666666665 55666666666666766666666689999999999999998 889999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCC
Q psy2938          92 FGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        92 ~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .|+.+++++|+++|++++.+|
T Consensus       121 ~g~~~~v~~Ll~~ga~~~~~d  141 (244)
T 3ui2_A          121 YVRPEVVEALVELGADIEVED  141 (244)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCHHHHHHHHHCCCCCCCCC
Confidence            999999999999999999876

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.78  E-value=1.8e-19  Score=109.79  Aligned_cols=102  Identities=12%  Similarity=0.071  Sum_probs=81.1

Q ss_pred             ccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q psy2938          11 TFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS   90 (113)
Q Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~   90 (113)
                      ..+..++||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~   95 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAA   95 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence            34567778888887766666666555555555555666666777777777778999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCC
Q psy2938          91 AFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        91 ~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..|+.+++++|+++|++++.++
T Consensus        96 ~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           96 SCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             HTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HcCCHHHHHHHHHcCCCccccc
Confidence            9999999999999999988764

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.78  E-value=2.3e-19  Score=102.99  Aligned_cols=103  Identities=11%  Similarity=0.090  Sum_probs=79.9

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..+..|+||+|+ +..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|+||||
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  106 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIH  106 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence            566778889999998 5444444444444444444445555666666777667778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|+++ ++++.+|
T Consensus       107 ~A~~~~~~~~v~~Ll~~-~~~~~~~  130 (156)
T 1bd8_A          107 LAVQEGHTAVVSFLAAE-SDLHRRD  130 (156)
T ss_dssp             HHHHHTCHHHHHHHHTT-SCTTCCC
T ss_pred             HHHHhChHHHHHHHHhc-cCCCCcC
Confidence            99999999999999988 8888765

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.78  E-value=5.3e-19  Score=97.83  Aligned_cols=98  Identities=23%  Similarity=0.239  Sum_probs=75.9

Q ss_pred             CCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCC
Q psy2938          15 GRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT   94 (113)
Q Consensus        15 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~   94 (113)
                      .|.||+|.++..++-..+..+...+......+..+.++++.++..+..+++++|++.|++++.+|..|.||||+|+..++
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~   80 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH   80 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence            37888888776655555555444444444444455555666665556679999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCC
Q psy2938          95 QEMVEFLCERGADVNKGK  112 (113)
Q Consensus        95 ~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+++++|+++|++++.+|
T Consensus        81 ~~~~~~Ll~~g~~~~~~~   98 (126)
T 1n0r_A           81 LEVVKLLLEAGADVNAKD   98 (126)
T ss_dssp             HHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHHHcCCCCcccC
Confidence            999999999999998765

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.77  E-value=3.6e-19  Score=100.32  Aligned_cols=98  Identities=14%  Similarity=0.103  Sum_probs=78.1

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..|..|+||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.||||
T Consensus        39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~  118 (136)
T 2jab_A           39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFD  118 (136)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHH
Confidence            45677888999999988766655555555555555555555556666666666667999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcC
Q psy2938          88 WASAFGTQEMVEFLCERG  105 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g  105 (113)
                      +|+..++.+++++|++.|
T Consensus       119 ~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A          119 ISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHTTCHHHHHHHHHC-
T ss_pred             HHHHCCCHHHHHHHHHcC
Confidence            999999999999999876

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.77  E-value=6.5e-19  Score=107.06  Aligned_cols=105  Identities=13%  Similarity=0.104  Sum_probs=79.8

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccc-cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKT-SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      .++..+..|.||+|+++..++...+..+...+......+ ..+.++++.|+..+..+++++|++.|++++.+|..|.|||
T Consensus       108 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  187 (241)
T 1k1a_A          108 DLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSAL  187 (241)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHH
T ss_pred             cccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            445567778888888776555555555554454444444 4455566666666666799999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+|+..|+.+++++|+++|++++.+|
T Consensus       188 ~~A~~~~~~~~v~~Ll~~ga~~~~~~  213 (241)
T 1k1a_A          188 HSASGRGLLPLVRTLVRSGADSSLKN  213 (241)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHcCCHHHHHHHHhcCCCCCCcC
Confidence            99999999999999999999998775

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.77  E-value=9.1e-20  Score=104.94  Aligned_cols=102  Identities=15%  Similarity=0.021  Sum_probs=81.8

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCCh-HHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQT-LLNW   88 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~t-pL~~   88 (113)
                      ...+..+.||+|+++..++...+..+...+...+..+..+.+++++|+ .+..+++++|++.|++++.+|..|+| |||+
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~   84 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHD   84 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHH
Confidence            445678899999988777666666666666666666666666677765 55667999999999999999999999 9999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..|+.+++++|+++|++++.+|
T Consensus        85 A~~~~~~~~v~~Ll~~ga~~~~~d  108 (156)
T 1bi7_B           85 AAREGFLDTLVVLHRAGARLDVRD  108 (156)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCC
T ss_pred             HHHCCCHHHHHHHHHcCCCCcccC
Confidence            999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.77  E-value=1.9e-19  Score=103.85  Aligned_cols=104  Identities=15%  Similarity=0.094  Sum_probs=63.4

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..+..|+||+|++.. ++...+..+...+...+.++..+.++++.++..+..+++++|++.|++++.+|..|.||||
T Consensus        30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  108 (162)
T 1ihb_A           30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLH  108 (162)
T ss_dssp             CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            345566677777776543 3333333333333333333344444444444444556777777777888877777888888


Q ss_pred             HHHHcCCHHHHHHHHHcCCC-CCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGAD-VNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~-~~~~d  112 (113)
                      +|+..|+.+++++|+++|++ ++.+|
T Consensus       109 ~A~~~~~~~~v~~Ll~~g~~~~~~~~  134 (162)
T 1ihb_A          109 LAAKEGHLRVVEFLVKHTASNVGHRN  134 (162)
T ss_dssp             HHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHccCCCCCCcC
Confidence            88888888888888877776 35443

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.77  E-value=4.7e-19  Score=102.15  Aligned_cols=100  Identities=13%  Similarity=0.109  Sum_probs=81.5

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCC-ccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVE-VNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-~~~~d~~g~tpL   86 (113)
                      +++..+..|+||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++.|++ ++.+|..|.|||
T Consensus        62 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l  141 (162)
T 1ihb_A           62 NPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTAC  141 (162)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHH
Confidence            4566788999999998877766666666666666666666677777777777777899999999998 689999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      |+|+..|+.+++++|+++|+|
T Consensus       142 ~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          142 DLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             HHHHHTTCHHHHHHHHHTC--
T ss_pred             HHHHHcCCHHHHHHHHHhCCC
Confidence            999999999999999999986

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.77  E-value=6.4e-19  Score=106.40  Aligned_cols=105  Identities=18%  Similarity=0.081  Sum_probs=66.3

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCC-CCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGG-VEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~d~~g~tpL   86 (113)
                      +++..+..|.||+|+++..++-..+..+...+...+.++..+.+++++|+..+..+++++|++.| ++++.+|..|+|||
T Consensus        99 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L  178 (228)
T 2dzn_A           99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPL  178 (228)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHH
T ss_pred             ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHH
Confidence            34445556666666655444333333333334444444444555555555555556777777777 77777777788888


Q ss_pred             HHHHHcCCHHHHHHHH-HcCCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLC-ERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll-~~g~~~~~~d  112 (113)
                      |+|+..++.+++++|+ +.|++++.+|
T Consensus       179 ~~A~~~~~~~~v~~Ll~~~ga~~~~~~  205 (228)
T 2dzn_A          179 FHALAEGHGDAAVLLVEKYGAEYDLVD  205 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHCCCSCCBC
T ss_pred             HHHHHcCCHHHHHHHHHhcCCCCCccC
Confidence            8888888888888877 6777777654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.77  E-value=6.3e-19  Score=109.07  Aligned_cols=106  Identities=18%  Similarity=0.181  Sum_probs=79.1

Q ss_pred             hhhccccCCCchhHHHHHhhc----cCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCC
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQ----EGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDS-GGVEVNFMDDVG   82 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~~g   82 (113)
                      +++..+..|.||+|+++..++    ...+..+...+...+.++..+.++++.|+..+..+++++|++ .|++++.+|..|
T Consensus       174 ~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g  253 (285)
T 1wdy_A          174 DVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDG  253 (285)
T ss_dssp             CTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTS
T ss_pred             CCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCC
Confidence            445567778888877764443    112222333444444445556666666666666779999998 899999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q psy2938          83 QTLLNWASAFGTQEMVEFLCERGADVNKGKL  113 (113)
Q Consensus        83 ~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d~  113 (113)
                      .||||+|+..++.+++++|+++|++++.+|+
T Consensus       254 ~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~  284 (285)
T 1wdy_A          254 KTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence            9999999999999999999999999999884

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.77  E-value=9.7e-19  Score=105.37  Aligned_cols=104  Identities=13%  Similarity=0.056  Sum_probs=65.8

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      ++..+..|.||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.||||+
T Consensus        85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  164 (223)
T 2f8y_A           85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL  164 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHH
Confidence            34455566666666655444444444444444444444445555555555555567777777777777777777777777


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..|+.+++++|+++|++++.+|
T Consensus       165 A~~~~~~~~v~~Ll~~ga~~~~~~  188 (223)
T 2f8y_A          165 AAREGSYETAKVLLDHFANRDITD  188 (223)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCcccc
Confidence            777777777777777777777654

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.77  E-value=7.9e-19  Score=106.24  Aligned_cols=102  Identities=17%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             ccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q psy2938          11 TFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS   90 (113)
Q Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~   90 (113)
                      ..+..|.||+|+++..++...+..+...+......+..+.++++.++..+..+++++|++.|++++.+|..|.||||+|+
T Consensus       101 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  180 (231)
T 3aji_A          101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLAC  180 (231)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHH
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHH
Confidence            34444555555544333322222222223333333344444444444444556778888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCC
Q psy2938          91 AFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        91 ~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..++.+++++|+++|++++.+|
T Consensus       181 ~~~~~~~v~~Ll~~ga~~~~~~  202 (231)
T 3aji_A          181 DEERVEEAKFLVTQGASIYIEN  202 (231)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCC
T ss_pred             HCCCHHHHHHHHHCCCCCCCCC
Confidence            8888888888888888877665

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.77  E-value=8.4e-19  Score=106.27  Aligned_cols=105  Identities=16%  Similarity=0.172  Sum_probs=74.2

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccch-----hccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCC--
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHK-----TFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDD--   80 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~--   80 (113)
                      +++..|..|+||+|+++..++...+..+...+...     ...+..+.+++++|+..+..+++++|++.|++++..+.  
T Consensus        29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  108 (232)
T 2rfa_A           29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS  108 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc
Confidence            45667888889998887766655555544333332     22233455556666655666788888888888887764  


Q ss_pred             -----------CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          81 -----------VGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        81 -----------~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                                 .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       109 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d  151 (232)
T 2rfa_A          109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQD  151 (232)
T ss_dssp             GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence                       68888888888888888888888888888765

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.76  E-value=6.2e-19  Score=110.16  Aligned_cols=99  Identities=10%  Similarity=0.074  Sum_probs=78.9

Q ss_pred             hccccCCCchhHHHHHh---hccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938          10 QTFDVGRYQPSHCQAAL---NQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      +..+..|.||+|+++..   ++...+..+...+..++.++..+.+++++|+..+..+++++|++.|++++.+|..|.|||
T Consensus       163 ~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL  242 (278)
T 1dcq_A          163 ANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPL  242 (278)
T ss_dssp             SSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             cccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHH
Confidence            34477899999999876   444445555555666666666666777777777777899999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADV  108 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~  108 (113)
                      |+|+..|+.+++++|+++|++.
T Consensus       243 ~~A~~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          243 DIAKRLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCC
Confidence            9999999999999999998864

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.76  E-value=2.2e-18  Score=105.94  Aligned_cols=101  Identities=11%  Similarity=-0.003  Sum_probs=80.4

Q ss_pred             cccCCCchhHHHHHh---hccCccccccccccchhc-----------cccchHHHHHHHHhCCHHHHHHHHHhCCCCccc
Q psy2938          12 FDVGRYQPSHCQAAL---NQEGNIEYKAHTKTHKTF-----------KTSNILQLIECIRSKDTDALIETIDSGGVEVNF   77 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~   77 (113)
                      .|..|+||+|+++..   ++...+..+...+.....           .+..+.+++++|+..+..+++++|++.|++++.
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~  118 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHL  118 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCc
Confidence            688999999999987   776666666544333221           123455666666666667899999999999999


Q ss_pred             cCCC-------------CChHHHHHHHcCCHHHHHHHHH---cCCCCCCCC
Q psy2938          78 MDDV-------------GQTLLNWASAFGTQEMVEFLCE---RGADVNKGK  112 (113)
Q Consensus        78 ~d~~-------------g~tpL~~A~~~~~~~~v~~Ll~---~g~~~~~~d  112 (113)
                      .+..             |.||||+|+..|+.+++++|++   +|++++.+|
T Consensus       119 ~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d  169 (256)
T 2etb_A          119 RACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATD  169 (256)
T ss_dssp             CCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC
T ss_pred             ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccC
Confidence            9876             9999999999999999999999   999999876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.76  E-value=1.2e-18  Score=105.91  Aligned_cols=67  Identities=25%  Similarity=0.285  Sum_probs=50.9

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +..+.+++++|+..+..+++++|++.|++++.++. .|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       114 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  181 (236)
T 1ikn_D          114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT  181 (236)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccc
Confidence            33344555555555556788888888888888886 88888888888888888888888888887765

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.76  E-value=1e-18  Score=114.39  Aligned_cols=103  Identities=16%  Similarity=0.094  Sum_probs=74.7

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWA   89 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A   89 (113)
                      +..+..|.||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|
T Consensus       272 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A  351 (437)
T 1n11_A          272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQA  351 (437)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence            34455666666665544443333333334444444455555666666666666799999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          90 SAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        90 ~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +..|+.+++++|+++|++++.+|
T Consensus       352 ~~~g~~~iv~~Ll~~ga~~~~~~  374 (437)
T 1n11_A          352 AQQGHTDIVTLLLKNGASPNEVS  374 (437)
T ss_dssp             HHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             HHCChHHHHHHHHHCcCCCCCCC
Confidence            99999999999999999998765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.76  E-value=1.2e-18  Score=105.76  Aligned_cols=105  Identities=10%  Similarity=0.113  Sum_probs=74.3

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..+..|+||+|+++..++...+..+...+......+..+.++++.++..+..+++++|++.|++++.+|..|.||||
T Consensus       103 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  182 (237)
T 3b7b_A          103 DVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLH  182 (237)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            34455667778877766555444444444444444444455555555555555567888888888888888888889999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..++.+++++|+++|++++.+|
T Consensus       183 ~A~~~~~~~~v~~Ll~~gad~~~~d  207 (237)
T 3b7b_A          183 IAARENRYDCVVLFLSRDSDVTLKN  207 (237)
T ss_dssp             HHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHHhCCHhHHHHHHHcCCCCCccC
Confidence            9999889999999888888888765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.75  E-value=2e-19  Score=106.58  Aligned_cols=95  Identities=7%  Similarity=0.058  Sum_probs=62.6

Q ss_pred             hhccc-cCCCchhHHHH--------------HhhccCccccccccccchhccccchHHHHHHHHhCC-----HHHHHHHH
Q psy2938           9 IQTFD-VGRYQPSHCQA--------------ALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKD-----TDALIETI   68 (113)
Q Consensus         9 ~~~~~-~~~~~~~~~~~--------------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L   68 (113)
                      .+..+ ..|+||+|+++              |+.+|++++..+         ..+.++++.++..+.     ..+++++|
T Consensus        30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d---------~~g~TpLh~a~~~~~~~~~~~~~iv~~L  100 (186)
T 3t8k_A           30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRT---------KEGTTLFFPLFQGGGNDITGTTELCKIF  100 (186)
T ss_dssp             SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCC---------TTCCCTHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCC---------CCCCcHHHHHHHcCCcchhhHHHHHHHH
Confidence            34444 56888888765              344455555443         233344444444443     14678888


Q ss_pred             HhCCCCccccCCCCC-hHHHHHHHcC-----CHHHHHHHHH-cCCCCCCCC
Q psy2938          69 DSGGVEVNFMDDVGQ-TLLNWASAFG-----TQEMVEFLCE-RGADVNKGK  112 (113)
Q Consensus        69 ~~~~~~~~~~d~~g~-tpL~~A~~~~-----~~~~v~~Ll~-~g~~~~~~d  112 (113)
                      ++.|++++.+|..|+ ||||+|+..+     +.+++++|++ +|++++.+|
T Consensus       101 l~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d  151 (186)
T 3t8k_A          101 LEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKD  151 (186)
T ss_dssp             HHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCC
T ss_pred             HHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccC
Confidence            888888888888888 8888888743     3568888888 888888766

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.75  E-value=2.4e-18  Score=109.27  Aligned_cols=105  Identities=21%  Similarity=0.104  Sum_probs=86.8

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..|..|.||+|+++..++-..+..+...+...+..+..+.+++++|+..++.+++++|++.|++++..|..|.||||
T Consensus        50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~  129 (351)
T 3utm_A           50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLH  129 (351)
T ss_dssp             TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            45567888999999988777766666666666666666666667777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|+++|++++..+
T Consensus       130 ~A~~~~~~~~v~~Ll~~g~~~~~~~  154 (351)
T 3utm_A          130 EAASKNRVEVCSLLLSHGADPTLVN  154 (351)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcccc
Confidence            9999999999999999999988654

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.75  E-value=6.2e-19  Score=110.29  Aligned_cols=103  Identities=15%  Similarity=0.073  Sum_probs=79.8

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      .++..|..|+||+|+++..++...+..+...+...+..+  +.+++++|+..+..+++++|++.|++++.+|..|+||||
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~  100 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALY  100 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHH
Confidence            467788899999999887766666666665555555442  455566666666667888898889999988889999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|+++|++++.+|
T Consensus       101 ~A~~~g~~~~v~~Ll~~ga~~~~~~  125 (285)
T 3kea_A          101 YAVDSGNMQTVKLFVKKNWRLMFYG  125 (285)
T ss_dssp             HHHHTTCHHHHHHHHHHCGGGGGCS
T ss_pred             HHHHcCCHHHHHHHHhcCCCCCccC
Confidence            9999999999999999998887654

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.75  E-value=2.2e-18  Score=107.73  Aligned_cols=106  Identities=17%  Similarity=0.110  Sum_probs=84.5

Q ss_pred             hhhhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChH
Q psy2938           6 SKAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL   85 (113)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tp   85 (113)
                      ...+...+..|+||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++.|++++.+|..|.||
T Consensus        49 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~  128 (285)
T 3d9h_A           49 SNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTP  128 (285)
T ss_dssp             CCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred             hCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            44566678899999999887666666665555555555566666667777777777789999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          86 LNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        86 L~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      ||+|+..|+.+++++|+++|++++..
T Consensus       129 L~~A~~~~~~~~v~~Ll~~g~~~~~~  154 (285)
T 3d9h_A          129 LFNACVSGSWDCVNLLLQHGASVQPE  154 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSSCS
T ss_pred             HHHHHHcCHHHHHHHHHHCCCCCCCC
Confidence            99999999999999999999887754

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.75  E-value=6.7e-19  Score=102.53  Aligned_cols=105  Identities=10%  Similarity=0.024  Sum_probs=86.3

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..+..|.||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++.|++++.+|..|.||||
T Consensus        61 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  140 (172)
T 3v30_A           61 DPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD  140 (172)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            45667889999999988777666666666666666666666667777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..++.+++++|+++|+++..++
T Consensus       141 ~A~~~~~~~~~~~L~~~~~~~~~~~  165 (172)
T 3v30_A          141 LAVALGYRKVQQVIENHILKLFQSN  165 (172)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC-
T ss_pred             HHHHhCcHHHHHHHHHHHHHHhccc
Confidence            9999999999999999988766543

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.74  E-value=2.4e-18  Score=99.77  Aligned_cols=98  Identities=15%  Similarity=0.171  Sum_probs=78.6

Q ss_pred             CCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCC
Q psy2938          15 GRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT   94 (113)
Q Consensus        15 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~   94 (113)
                      .|.||+|.++..++-..+..+...+...+..+..+.+++++|+..+..+++++|++.|++++..+..|.||||+|+..++
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~   81 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGY   81 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCC
Confidence            46788888876666555555554444455555556666667766667789999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCCCC
Q psy2938          95 QEMVEFLCERGADVNKGK  112 (113)
Q Consensus        95 ~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+++++|+++|++++.+|
T Consensus        82 ~~~v~~Ll~~g~~~~~~~   99 (167)
T 3v31_A           82 TDIVKMLLDCGVDVNEYD   99 (167)
T ss_dssp             HHHHHHHHHHTCCTTCCC
T ss_pred             HHHHHHHHHCCCCCCcCC
Confidence            999999999999998765

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.74  E-value=8.5e-19  Score=112.53  Aligned_cols=101  Identities=14%  Similarity=0.104  Sum_probs=76.7

Q ss_pred             cccCCCchhHHHHHhh--ccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCC-----ccccCCCCCh
Q psy2938          12 FDVGRYQPSHCQAALN--QEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVE-----VNFMDDVGQT   84 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~-----~~~~d~~g~t   84 (113)
                      .+..|.||+|+++..+  +...+..+...+...+..+..+.+++++|+..+..+++++|++.|++     ++..|..|+|
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t  213 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS  213 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCc
Confidence            6777888888887666  55555555555666665666666666666666666788888887777     8888888888


Q ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          85 LLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        85 pL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |||+|+..|+.+++++|+++|++++.+|
T Consensus       214 ~L~~A~~~g~~~~v~~Ll~~gad~~~~d  241 (364)
T 3ljn_A          214 HLHWAILINWEDVAMRFVEMGIDVNMED  241 (364)
T ss_dssp             TTHHHHTTTCHHHHHHHHTTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            8888888888888888888888888765

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.74  E-value=3.7e-18  Score=103.30  Aligned_cols=102  Identities=18%  Similarity=0.189  Sum_probs=45.2

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      ++..+..|.||+|+++..++-..+..+...+...+..+..+.++++.|+..+..+++++|++.|++++.+|..|.||||+
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~  112 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHY  112 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence            34445556666665554433333333333333332223333333333333333344444444455555444445555555


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNK  110 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~  110 (113)
                      |+..++.+++++|+++|++++.
T Consensus       113 A~~~~~~~~~~~Ll~~g~~~~~  134 (231)
T 3aji_A          113 AASKNRHEIAVMLLEGGANPDA  134 (231)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCC
Confidence            5555555555555554444443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.74  E-value=1.3e-18  Score=108.40  Aligned_cols=105  Identities=15%  Similarity=0.180  Sum_probs=78.0

Q ss_pred             hhhccccCCCchhHHHHH----------hhccC-ccccccccc---cc-------------------------hhccccc
Q psy2938           8 AIQTFDVGRYQPSHCQAA----------LNQEG-NIEYKAHTK---TH-------------------------KTFKTSN   48 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l----------~~~~~-~~~~~~~~~---~~-------------------------~~~~~~~   48 (113)
                      .++..|..|+||+|+++.          +..|+ +++..+..+   ++                         ....+..
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~  182 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQA  182 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCC
Confidence            467788889999888653          55565 555444221   11                         1112233


Q ss_pred             hHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Q psy2938          49 ILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCE-RGADVNKGK  112 (113)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~g~~~~~~d  112 (113)
                      +.+++++|+..+..+++++|++.|++++.+|..|+||||+|+..|+.+++++|++ .|++++.+|
T Consensus       183 g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d  247 (276)
T 4hbd_A          183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD  247 (276)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcC
Confidence            4455555655566679999999999999999999999999999999999999999 899999876

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.74  E-value=1.6e-18  Score=106.57  Aligned_cols=103  Identities=17%  Similarity=0.271  Sum_probs=66.5

Q ss_pred             hccccCCCchhHHHHHhhccCcccccccccc-chhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKT-HKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      +..+..|+||+|+++..++...+..+...+. .....+..+.+++++++..+..+++++|++.|++++.+|..|.||||+
T Consensus        84 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~  163 (253)
T 1yyh_A           84 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW  163 (253)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHH
Confidence            3344455555555544433333333332221 333334444455555555455568888888888888888889999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..|+.+++++|+++|++++.+|
T Consensus       164 A~~~~~~~~v~~Ll~~ga~~~~~~  187 (253)
T 1yyh_A          164 AAAVNNVDAAVVLLKNGANKDMQN  187 (253)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcC
Confidence            999999999999998888888765

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.74  E-value=7.9e-18  Score=102.84  Aligned_cols=99  Identities=18%  Similarity=0.173  Sum_probs=55.1

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHc
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAF   92 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~   92 (113)
                      +..|.||+|.+...+....+..+...+........+.++++.++..++. +++++|++.|++++.+|..|+||||+|+..
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~~~~~~t~L~~A~~~g~~-~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~   80 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLLDSSLEGEF-DLVQRIIYEVDDPSLPNDEGITALHNAVCA   80 (239)
T ss_dssp             -----------------------------------CHHHHHHHHHHTCH-HHHHHHTSTTSSCCCCCTTSCCHHHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCcccCchhhHHHHHHHHcCCH-HHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence            3468899999888777777777776666666554445555555555554 689999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCCC
Q psy2938          93 GTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        93 ~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+.+++++|+++|++++.+|
T Consensus        81 g~~~~v~~Ll~~ga~~~~~d  100 (239)
T 1ycs_B           81 GHTEIVKFLVQFGVNVNAAD  100 (239)
T ss_dssp             TCHHHHHHHHHHTCCTTCCC
T ss_pred             CCHHHHHHHHHcCCCCCccC
Confidence            99999999999999999876

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.74  E-value=7.1e-18  Score=101.79  Aligned_cols=101  Identities=18%  Similarity=0.204  Sum_probs=66.7

Q ss_pred             cccCCCchhHHHHHhhccCccccccccc--cchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTK--THKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWA   89 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A   89 (113)
                      .+..|+||+|+++..++...+..+...+  ......+..+.++++.++..+..+++++|++.|++++.+|..|.||||+|
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A  147 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRA  147 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            4556666766666554444444444333  34444444455555555555566677888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHHcC-CCCCCCC
Q psy2938          90 SAFGTQEMVEFLCERG-ADVNKGK  112 (113)
Q Consensus        90 ~~~~~~~~v~~Ll~~g-~~~~~~d  112 (113)
                      +..|+.+++++|++.| ++++.+|
T Consensus       148 ~~~~~~~~v~~Ll~~g~~~~~~~d  171 (228)
T 2dzn_A          148 ASVGSLKLIELLCGLGKSAVNWQD  171 (228)
T ss_dssp             HHTTCHHHHHHHHTTTCCCSCCCC
T ss_pred             HHcCCHHHHHHHHhcCcccccCcC
Confidence            8888888888888877 7777654

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.74  E-value=1.5e-19  Score=110.13  Aligned_cols=105  Identities=9%  Similarity=0.048  Sum_probs=87.0

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d-~~g~tpL   86 (113)
                      +++..|..|+||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++.|++++..+ ..|+|||
T Consensus        46 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL  125 (229)
T 2vge_A           46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAF  125 (229)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTG
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHH
Confidence            566788899999999887666666666666666666666666677777777777789999999999999986 6999999


Q ss_pred             HHH--HHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWA--SAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A--~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+|  +..++.+++++|+++|++++.+|
T Consensus       126 ~~A~a~~~~~~~~v~~Ll~~ga~~~~~~  153 (229)
T 2vge_A          126 EKCDPYREGYADCATYLADVEQSMGLMN  153 (229)
T ss_dssp             GGCCTTSTTHHHHHHHHHHHHHHTTTSG
T ss_pred             HHHHHHhcChHHHHHHHHHcCCCccccc
Confidence            999  99999999999999999988764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.74  E-value=1.9e-18  Score=113.10  Aligned_cols=105  Identities=14%  Similarity=0.111  Sum_probs=75.6

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..+..|+||+|+++..++-..+..+...+...+..+..+.+++++|+..++.+++++|++.|++++.++..|.||||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~   85 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLH   85 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHH
Confidence            45667888999999988777766666666555555555555555666666666667999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|+++|++++..+
T Consensus        86 ~A~~~g~~~~v~~Ll~~ga~~~~~~  110 (437)
T 1n11_A           86 CAARIGHTNMVKLLLENNANPNLAT  110 (437)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCC
T ss_pred             HHHHCCCHHHHHHHHhCCCCCCCCC
Confidence            9999999999999999999888654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.74  E-value=4.6e-18  Score=106.32  Aligned_cols=62  Identities=21%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          51 QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        51 ~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +++++|+..+..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       201 t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d  262 (299)
T 1s70_B          201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN  262 (299)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcC
Confidence            44555555555579999999999999999999999999999999999999999999999876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.73  E-value=6e-18  Score=101.90  Aligned_cols=103  Identities=17%  Similarity=0.271  Sum_probs=65.2

Q ss_pred             hccccCCCchhHHHHHhhccCcccccccccc-chhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKT-HKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      +..+..|+||+|+++..++...+..+...+. .....+..+.++++.|+..+..+++++|++.|++++..|..|.||||+
T Consensus        52 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  131 (223)
T 2f8y_A           52 NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW  131 (223)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHH
Confidence            3344555555555554443333333332221 333333444455555555555568888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..++.+++++|+++|++++.+|
T Consensus       132 A~~~~~~~~v~~Ll~~g~~~~~~~  155 (223)
T 2f8y_A          132 AAAVNNVDAAVVLLKNGANKDMQN  155 (223)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHcCCHHHHHHHHHcCCCCCCcC
Confidence            888888888888888888887664

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.73  E-value=1.2e-18  Score=107.02  Aligned_cols=97  Identities=10%  Similarity=0.015  Sum_probs=74.5

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhccccc-------------hHHHHHHHHhCCHHHHHHHHHh---CCCCc
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSN-------------ILQLIECIRSKDTDALIETIDS---GGVEV   75 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~L~~---~~~~~   75 (113)
                      .|..|+||+|+++..++...+..+...+...+..+..             +.+++++|+..+..+++++|++   .|+++
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~  165 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL  165 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence            3467999999987655555555544444444444442             4555555665666679999999   99999


Q ss_pred             cccCCCCChHHHHHHH--cCCHH-------HHHHHHHcCCCC
Q psy2938          76 NFMDDVGQTLLNWASA--FGTQE-------MVEFLCERGADV  108 (113)
Q Consensus        76 ~~~d~~g~tpL~~A~~--~~~~~-------~v~~Ll~~g~~~  108 (113)
                      +.+|..|+||||+|+.  .++.+       ++++|+++|+++
T Consensus       166 n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~  207 (256)
T 2etb_A          166 EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARL  207 (256)
T ss_dssp             TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCc
Confidence            9999999999999999  88888       999999999988

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.73  E-value=6.7e-18  Score=102.66  Aligned_cols=105  Identities=19%  Similarity=0.127  Sum_probs=78.9

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCC------ccccCCC
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVE------VNFMDDV   81 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~------~~~~d~~   81 (113)
                      .++..+..|+||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.+.+      ++..+..
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  116 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN  116 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTT
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCC
Confidence            4566777888888888877766666666666666666665666666666665666788888887765      4667778


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          82 GQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        82 g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |.||||+|+..|+.+++++|+++|++++.++
T Consensus       117 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  147 (236)
T 1ikn_D          117 GHTCLHLASIHGYLGIVELLVSLGADVNAQE  147 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHHTCCTTCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            8999999999999999999999898888764

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.73  E-value=6.4e-18  Score=100.35  Aligned_cols=98  Identities=13%  Similarity=0.073  Sum_probs=41.9

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHH-hCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETID-SGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~~~~~~~~~d~~g~tpL   86 (113)
                      +++..+..|+||+|+++..++...+..+...+...+..+..+.+++++++..+..+++++|+ ..+++++..|..|.|||
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  110 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNAL  110 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHH
Confidence            45556677777777765443333333333223222222222223333333333333444443 33334444444444444


Q ss_pred             HHHHHcCCHHHHHHHHHcC
Q psy2938          87 NWASAFGTQEMVEFLCERG  105 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g  105 (113)
                      |+|+..|+.+++++|+++|
T Consensus       111 ~~A~~~~~~~~v~~Ll~~g  129 (201)
T 3hra_A          111 IPAAEKGHIDNVKLLLEDG  129 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHcC
Confidence            4444444444444444444

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.73  E-value=6.4e-18  Score=100.34  Aligned_cols=105  Identities=19%  Similarity=0.176  Sum_probs=80.4

Q ss_pred             hhhccccCCCchhHHHHHhhccCcccccc-ccccchhccccchHHHHHHHHhCCHHHHHHHHHhCC-CCccccCCCCChH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKA-HTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGG-VEVNFMDDVGQTL   85 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~d~~g~tp   85 (113)
                      +++..+..|+||+|+++..++...+..+. ..+......+..+.++++.++..+..+++++|++.| ++++.+|..|.||
T Consensus        64 ~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~  143 (201)
T 3hra_A           64 DINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTA  143 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCH
Confidence            45667788999999988766655555554 344444445555556666666666667889898887 8999999999999


Q ss_pred             HHHHHHcCC-----HHHHHHHHHcCCCCCCCC
Q psy2938          86 LNWASAFGT-----QEMVEFLCERGADVNKGK  112 (113)
Q Consensus        86 L~~A~~~~~-----~~~v~~Ll~~g~~~~~~d  112 (113)
                      ||+|+..+.     .+++++|+++|++++.+|
T Consensus       144 L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~  175 (201)
T 3hra_A          144 LIEAVGLREGNQLYQDIVKLLMENGADQSIKD  175 (201)
T ss_dssp             HHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHhccchhhHHHHHHHHHHCCCCCCccC
Confidence            999999887     899999999999998775

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.73  E-value=1.3e-17  Score=106.05  Aligned_cols=71  Identities=23%  Similarity=0.298  Sum_probs=54.9

Q ss_pred             hhccccchHHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          42 KTFKTSNILQLIECIRSKDTDALIETIDS-GGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.++..+.++++.++..+..+++++|+. .|++++.+|..|+||||+|+..|+.++|++|+++|+++|.+|
T Consensus       232 ~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~~  303 (337)
T 4g8k_A          232 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  303 (337)
T ss_dssp             TTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTCC
T ss_pred             CCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            33344455555555555555567777775 589999999999999999999999999999999999998765

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.73  E-value=1.3e-18  Score=107.07  Aligned_cols=99  Identities=10%  Similarity=0.057  Sum_probs=76.0

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccc--------------cchHHHHHHHHhCCHHHHHHHHHh---CC
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKT--------------SNILQLIECIRSKDTDALIETIDS---GG   72 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~L~~---~~   72 (113)
                      ...|..|+||+|+++..++...+..+...+...+..+              ..+.+++++|+..+..+++++|++   .|
T Consensus        87 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  166 (260)
T 3jxi_A           87 RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQ  166 (260)
T ss_dssp             CCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             cccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccC
Confidence            3445589999999877666555555555555555444              345555666666666679999999   89


Q ss_pred             CCccccCCCCChHHHHHHHcCC---------HHHHHHHHHcCCCC
Q psy2938          73 VEVNFMDDVGQTLLNWASAFGT---------QEMVEFLCERGADV  108 (113)
Q Consensus        73 ~~~~~~d~~g~tpL~~A~~~~~---------~~~v~~Ll~~g~~~  108 (113)
                      ++++.+|..|+||||+|+..++         .+++++|+++|+++
T Consensus       167 a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~  211 (260)
T 3jxi_A          167 ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKL  211 (260)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccc
Confidence            9999999999999999998877         79999999999987

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.72  E-value=7.4e-18  Score=107.02  Aligned_cols=101  Identities=18%  Similarity=0.240  Sum_probs=77.7

Q ss_pred             cccCCCchhHHHHHhhcc---CccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQE---GNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      .+..+.||+|+++..++.   ..+..+...+...+.++..+.++++.|+..+..+++++|++.|++++.+|..|+||||+
T Consensus       207 ~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~  286 (351)
T 3utm_A          207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHR  286 (351)
T ss_dssp             CTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            456788999988754322   22223334444444445555666666666666689999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          89 ASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+..|+.+++++|+++|++++.+|
T Consensus       287 A~~~~~~~~v~~Ll~~gad~~~~~  310 (351)
T 3utm_A          287 AALAGHLQTCRLLLSYGSDPSIIS  310 (351)
T ss_dssp             HHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHcCcHHHHHHHHHcCCCCCCcC
Confidence            999999999999999999999876

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.72  E-value=5.4e-18  Score=106.02  Aligned_cols=101  Identities=14%  Similarity=0.154  Sum_probs=79.5

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA   91 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~   91 (113)
                      .+..+.+|++.++..++-..+..+...+...+..+..+.+++++|+..+..+++++|++.|++++..|..|.||||+|+.
T Consensus        36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~  115 (299)
T 1s70_B           36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAAS  115 (299)
T ss_dssp             CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Confidence            34566788888876665555555554455555455556666666766667789999999999999999999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCC
Q psy2938          92 FGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        92 ~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .|+.+++++|+++|++++..|
T Consensus       116 ~g~~~~v~~Ll~~g~~~~~~~  136 (299)
T 1s70_B          116 CGYLDIAEYLISQGAHVGAVN  136 (299)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCHHHHHHHHhCCCCCCCcC
Confidence            999999999999999998765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.72  E-value=5.5e-18  Score=105.61  Aligned_cols=99  Identities=19%  Similarity=0.148  Sum_probs=60.9

Q ss_pred             cCCCchhHHHHHhhccCccccccccccc--hhccccchHHHHHHHHhCCHHHHHHHHHhCCC-Cccc-------------
Q psy2938          14 VGRYQPSHCQAALNQEGNIEYKAHTKTH--KTFKTSNILQLIECIRSKDTDALIETIDSGGV-EVNF-------------   77 (113)
Q Consensus        14 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~-~~~~-------------   77 (113)
                      ....+++|.+...++-..+.........  .+..+..+.+++++|+..+..+++++|++.|+ +++.             
T Consensus        74 ~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~  153 (276)
T 4hbd_A           74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTA  153 (276)
T ss_dssp             HHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGG
T ss_pred             HHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHH
Confidence            3345555555544433333222211111  22234444455555555555567777777765 4444             


Q ss_pred             -------------------------cCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          78 -------------------------MDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        78 -------------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                                               .+..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       154 ~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d  213 (276)
T 4hbd_A          154 LATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQD  213 (276)
T ss_dssp             GCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC
Confidence                                     34458899999999999999999999999999876

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.72  E-value=1.1e-17  Score=103.66  Aligned_cols=65  Identities=17%  Similarity=0.237  Sum_probs=53.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHhCCCCccccCC-CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          48 NILQLIECIRSKDTDALIETIDSGGVEVNFMDD-VGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.+++++|+..+..+++++|++.|++++..+. .|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       157 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d  222 (282)
T 1oy3_D          157 DGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARM  222 (282)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccc
Confidence            444556666666666789999999999998874 59999999999999999999999999998876

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.72  E-value=1.5e-18  Score=101.74  Aligned_cols=105  Identities=15%  Similarity=0.102  Sum_probs=87.1

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..+..|.||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.|||+
T Consensus        64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  143 (179)
T 3f6q_A           64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD  143 (179)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGG
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHH
Confidence            45667889999999988766666666666666666666666667777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..++.+++++|+++|++++..+
T Consensus       144 ~A~~~~~~~~~~~L~~~g~~~~~~~  168 (179)
T 3f6q_A          144 KAKAPLRELLRERAEKMGQNLNRIP  168 (179)
T ss_dssp             GSCHHHHHHHHHHHHHTTCCCSCBC
T ss_pred             HHHHHHHHHHHHHHHHhhcCcccCC
Confidence            9999999999999999999988643

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.71  E-value=1.1e-17  Score=97.28  Aligned_cols=98  Identities=14%  Similarity=0.162  Sum_probs=79.4

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..+..|.||+|+++..++...+..+...+...+..+..+.+++++|+..+..+++++|++.|++++.+|..|.|||+
T Consensus        72 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  151 (169)
T 2y1l_E           72 DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD  151 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            45667888999999988766666666655555555555666666777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcC
Q psy2938          88 WASAFGTQEMVEFLCERG  105 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g  105 (113)
                      +|+..++.+++++|++.|
T Consensus       152 ~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          152 ISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             HHHHTTCHHHHHHHHTC-
T ss_pred             HHHHhCCHHHHHHHHHcC
Confidence            999999999999999876

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.71  E-value=1.1e-17  Score=96.79  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=77.5

Q ss_pred             cccCCCchhHHHHHhhccCccccccc-cccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAH-TKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS   90 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~   90 (113)
                      .+..+.+|++.++..++...+..+.. .+......+..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|+
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~   83 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC   83 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence            35567888988887776666655543 23333333444446666666666678999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCCCCC
Q psy2938          91 AFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        91 ~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..++.+++++|+++|++++.+|
T Consensus        84 ~~~~~~~v~~Ll~~g~~~~~~~  105 (165)
T 3twr_A           84 SYGHYEVAELLVKHGAVVNVAD  105 (165)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HcCcHHHHHHHHhCCCCCCCcC
Confidence            9999999999999999998775

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.71  E-value=1.7e-17  Score=100.73  Aligned_cols=99  Identities=21%  Similarity=0.293  Sum_probs=45.7

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCC-CCccccCCCCChHHHHHHH
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGG-VEVNFMDDVGQTLLNWASA   91 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~d~~g~tpL~~A~~   91 (113)
                      +..|.||+|+++..++...+..+...+......+..+.++++.++..+..+++++|++.+ .+++..+..|.||||+|+.
T Consensus        41 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~  120 (237)
T 3b7b_A           41 SEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATE  120 (237)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHH
Confidence            334444444444333333333333333333333333334444444444444555555544 4555555555555555555


Q ss_pred             cCCHHHHHHHHHcCCCCCCC
Q psy2938          92 FGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        92 ~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      .++.+++++|++.|++++.+
T Consensus       121 ~~~~~~~~~Ll~~g~~~~~~  140 (237)
T 3b7b_A          121 YKHVDLVKLLLSKGSDINIR  140 (237)
T ss_dssp             TTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCHHHHHHHHHCCCCCCcc
Confidence            55555555555555555443

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.71  E-value=1.5e-17  Score=103.10  Aligned_cols=101  Identities=13%  Similarity=0.075  Sum_probs=77.6

Q ss_pred             cccCCCchhHHHHHh---hccCccccccccccc-------hhc----cccchHHHHHHHHhCCHHHHHHHHHhCCCCccc
Q psy2938          12 FDVGRYQPSHCQAAL---NQEGNIEYKAHTKTH-------KTF----KTSNILQLIECIRSKDTDALIETIDSGGVEVNF   77 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~   77 (113)
                      .+..|+||+|+++..   ++...+..+...+..       ++.    .+..+.+++++|+..+..+++++|++.|++++.
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~  129 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA  129 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCc
Confidence            477999999999965   555555555433321       111    233455666666666667899999999999999


Q ss_pred             cCC--------------CCChHHHHHHHcCCHHHHHHHHH---cCCCCCCCC
Q psy2938          78 MDD--------------VGQTLLNWASAFGTQEMVEFLCE---RGADVNKGK  112 (113)
Q Consensus        78 ~d~--------------~g~tpL~~A~~~~~~~~v~~Ll~---~g~~~~~~d  112 (113)
                      .+.              .|.||||+|+..|+.+++++|++   +|++++.+|
T Consensus       130 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d  181 (273)
T 2pnn_A          130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD  181 (273)
T ss_dssp             CBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeC
Confidence            987              79999999999999999999999   999999876

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.71  E-value=8.5e-18  Score=106.94  Aligned_cols=39  Identities=33%  Similarity=0.393  Sum_probs=36.5

Q ss_pred             CccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          74 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        74 ~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       275 ~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d  313 (327)
T 1sw6_A          275 MLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN  313 (327)
T ss_dssp             TTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            578889999999999999999999999999999999876

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.71  E-value=1.9e-17  Score=101.87  Aligned_cols=99  Identities=12%  Similarity=0.064  Sum_probs=73.7

Q ss_pred             cCCCchhHHHHH---hhccCcccccccccc-----------chhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC
Q psy2938          14 VGRYQPSHCQAA---LNQEGNIEYKAHTKT-----------HKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMD   79 (113)
Q Consensus        14 ~~~~~~~~~~~l---~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d   79 (113)
                      ..|+||+|++++   .++...+..+...+.           .....+..+.+++++|+..+..+++++|++.|++++..+
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~  123 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQA  123 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccc
Confidence            569999999883   244444444443221           111122244555666666666679999999999999998


Q ss_pred             --------------CCCChHHHHHHHcCCHHHHHHHHH---cCCCCCCCC
Q psy2938          80 --------------DVGQTLLNWASAFGTQEMVEFLCE---RGADVNKGK  112 (113)
Q Consensus        80 --------------~~g~tpL~~A~~~~~~~~v~~Ll~---~g~~~~~~d  112 (113)
                                    ..|.||||+|+..|+.+++++|++   +|++++.+|
T Consensus       124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d  173 (260)
T 3jxi_A          124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQD  173 (260)
T ss_dssp             EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCC
T ss_pred             cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccC
Confidence                          689999999999999999999999   999999876

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.71  E-value=1.5e-17  Score=100.71  Aligned_cols=100  Identities=7%  Similarity=0.035  Sum_probs=73.6

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhcccc-------------chHHHHHHHHhCCHHHHHHHHHhCCCCcc
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTS-------------NILQLIECIRSKDTDALIETIDSGGVEVN   76 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~L~~~~~~~~   76 (113)
                      ...|..|+||+|+++..++...+..+...+......+.             .+.+++++|+..+..+++++|++.|++++
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  148 (232)
T 2rfa_A           69 TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR  148 (232)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            34566899999998765554444444433333333322             34455555555555679999999999999


Q ss_pred             ccCCCCChHHHHHHHcCCHHHH----HHHHHcCCCCC
Q psy2938          77 FMDDVGQTLLNWASAFGTQEMV----EFLCERGADVN  109 (113)
Q Consensus        77 ~~d~~g~tpL~~A~~~~~~~~v----~~Ll~~g~~~~  109 (113)
                      .+|..|+||||+|+..++.+++    ++|+++|++++
T Consensus       149 ~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          149 AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             CCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence            9999999999999999999988    99999999874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.70  E-value=3.1e-17  Score=86.80  Aligned_cols=61  Identities=30%  Similarity=0.379  Sum_probs=53.2

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        52 ~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +++.++..+..+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++.+|
T Consensus         5 ~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d   65 (93)
T 1n0q_A            5 PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKD   65 (93)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccC
Confidence            4444444445579999999999999999999999999999999999999999999998876

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.70  E-value=1.8e-17  Score=105.46  Aligned_cols=99  Identities=11%  Similarity=0.005  Sum_probs=74.9

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccc-cccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAH-TKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      +++..+..|+||+|+++..++...+..+.. .+..++.++..+.+++++|+..++.+++++|++.|+++|.+     +||
T Consensus       231 d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L  305 (337)
T 4g8k_A          231 DVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLV  305 (337)
T ss_dssp             CTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHH
T ss_pred             CCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHH
Confidence            345667788888888776555544444442 35556666666777777777777778999999999999864     599


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      |+|+..|+.++|++|+++||++|..
T Consensus       306 ~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          306 MTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             HHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            9999999999999999999999863

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.70  E-value=5.4e-18  Score=105.08  Aligned_cols=99  Identities=10%  Similarity=0.012  Sum_probs=75.8

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhcccc--------------chHHHHHHHHhCCHHHHHHHHHh---CCCC
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTS--------------NILQLIECIRSKDTDALIETIDS---GGVE   74 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~---~~~~   74 (113)
                      .|..|+||+|+++..++...+..+...+...+..+.              .+.+++++|+..+..+++++|++   .|++
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad  176 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPAD  176 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCC
Confidence            456899999998765555555555444444444443              34455555555566679999999   9999


Q ss_pred             ccccCCCCChHHHHHHHcCC---------HHHHHHHHHcCCCCCC
Q psy2938          75 VNFMDDVGQTLLNWASAFGT---------QEMVEFLCERGADVNK  110 (113)
Q Consensus        75 ~~~~d~~g~tpL~~A~~~~~---------~~~v~~Ll~~g~~~~~  110 (113)
                      ++.+|..|+||||+|+..++         .+++++|+++|++++.
T Consensus       177 ~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          177 ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence            99999999999999999988         8999999999998863

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.70  E-value=1e-17  Score=91.38  Aligned_cols=92  Identities=13%  Similarity=0.133  Sum_probs=48.8

Q ss_pred             hccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q psy2938          10 QTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWA   89 (113)
Q Consensus        10 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A   89 (113)
                      ...+..|.+|+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A   97 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDIS   97 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHH
Confidence            34555666666665544444333333333333333344444444444444445566666666666666666666666666


Q ss_pred             HHcCCHHHHHHH
Q psy2938          90 SAFGTQEMVEFL  101 (113)
Q Consensus        90 ~~~~~~~~v~~L  101 (113)
                      +..|+.+++++|
T Consensus        98 ~~~~~~~~~~~L  109 (110)
T 2zgd_A           98 IDNGNEDLAEIL  109 (110)
T ss_dssp             HHHTCHHHHHHH
T ss_pred             HHcCCHHHHHHh
Confidence            666666666655

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.70  E-value=4.1e-17  Score=102.01  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=38.8

Q ss_pred             cccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          45 KTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+..+.++++.|+..+..+++++|++.|++++. +..|.||||+|+..++.+++++|+++|++++.+|
T Consensus       186 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d  252 (285)
T 3d9h_A          186 KISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKN  252 (285)
T ss_dssp             CBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            333344444444444444566666666666663 5566666666666666666666666666666554

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.70  E-value=9.4e-18  Score=107.67  Aligned_cols=101  Identities=9%  Similarity=0.024  Sum_probs=84.1

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccc-----hhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCC
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTH-----KTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVG   82 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g   82 (113)
                      +++..|..|.||+|+++..++...+..+...+..     .+..+..+.+++++|+..++.+++++|++.|++++.+|..|
T Consensus       165 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g  244 (364)
T 3ljn_A          165 SPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEH  244 (364)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTS
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCC
Confidence            4567788999999998877766666666554444     55566667777778888888889999999999999999999


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy2938          83 QTLLNWASAFGTQEMVEFLCERGADV  108 (113)
Q Consensus        83 ~tpL~~A~~~~~~~~v~~Ll~~g~~~  108 (113)
                      .||||+|+..|+.+++++|+++|+++
T Consensus       245 ~tpL~~A~~~g~~~~v~~Ll~~~~~~  270 (364)
T 3ljn_A          245 TVPLYLSVRAAMVLLTKELLQKTDVF  270 (364)
T ss_dssp             CCHHHHHHHTCCHHHHHHHHHHSCHH
T ss_pred             CCHHHHHHHhChHHHHHHHHHcCCch
Confidence            99999999999999999999998764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.69  E-value=3.6e-17  Score=93.66  Aligned_cols=94  Identities=13%  Similarity=0.139  Sum_probs=78.8

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..+..|+||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++.|++++.+|..|.||||
T Consensus        59 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  138 (153)
T 1awc_B           59 SRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            45667888999999988777666666666666666666666777777777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHH
Q psy2938          88 WASAFGTQEMVEFL  101 (113)
Q Consensus        88 ~A~~~~~~~~v~~L  101 (113)
                      +|+..|+.+++++|
T Consensus       139 ~A~~~~~~~i~~~L  152 (153)
T 1awc_B          139 ISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHTTCHHHHHHH
T ss_pred             HHHHcCCHHHHHHh
Confidence            99999999999987

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.69  E-value=1.5e-17  Score=107.36  Aligned_cols=105  Identities=14%  Similarity=0.138  Sum_probs=72.8

Q ss_pred             hhhccccCCCchhHHHHHhh---ccCccccccccccchhc--------cccchHHHHHHHHhCCHHHHHHHHHhCC-CCc
Q psy2938           8 AIQTFDVGRYQPSHCQAALN---QEGNIEYKAHTKTHKTF--------KTSNILQLIECIRSKDTDALIETIDSGG-VEV   75 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~   75 (113)
                      +++..+..|+||+|+++..+   +...+..+...+...+.        .+..+.+++++|+..+..+++++|++.+ +++
T Consensus       227 ~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~  306 (373)
T 2fo1_E          227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK  306 (373)
T ss_dssp             TTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCT
T ss_pred             ChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCc
Confidence            55667788888888766433   21222222222222211        2334555666666666677888888654 999


Q ss_pred             cccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          76 NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        76 ~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +.+|..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       307 n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d  343 (373)
T 2fo1_E          307 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVD  343 (373)
T ss_dssp             TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCC
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCC
Confidence            9999999999999999999999999999999998776

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.69  E-value=2.4e-17  Score=94.47  Aligned_cols=96  Identities=16%  Similarity=0.129  Sum_probs=76.4

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..|..|.||+|+++..++...+..+...+...+.++..+.+++++|+..+..+++++|++. ++++.+|..|.||||
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence            4567788999999998876665555555555555555555566666666666667899999998 999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHc
Q psy2938          88 WASAFGTQEMVEFLCER  104 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~  104 (113)
                      +|+..|+.+++++|+++
T Consensus       139 ~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCcHHHHHHHHhh
Confidence            99999999999999864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.69  E-value=2.3e-17  Score=103.19  Aligned_cols=65  Identities=11%  Similarity=0.009  Sum_probs=54.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChH-HHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          48 NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL-LNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tp-L~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.++++.|+..+..+++++|++.|++++.+|..|+|| ||+|+..++.+++++|+++|++++.+|
T Consensus       160 ~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad~~~~~  225 (285)
T 3kea_A          160 ILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSAN  225 (285)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBCSTTTT
T ss_pred             CCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Confidence            45666666666666778999998899999999899887 999999999999999999999988765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.68  E-value=1.2e-17  Score=105.38  Aligned_cols=95  Identities=14%  Similarity=0.105  Sum_probs=53.9

Q ss_pred             ccCCCchhHHHHHh---hccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHH
Q psy2938          13 DVGRYQPSHCQAAL---NQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWA   89 (113)
Q Consensus        13 ~~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A   89 (113)
                      +..|.||+|+++..   ++...+.++...+..++.++..+.+++++|+..+..+++++|++.|++++.+|..|.||||+|
T Consensus       187 ~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A  266 (301)
T 2b0o_E          187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA  266 (301)
T ss_dssp             CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHH
T ss_pred             CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHH
Confidence            55666666666643   222222333333333333344444445555545555566666666777776666677777777


Q ss_pred             HHcCCHHHHHHHHHcCCC
Q psy2938          90 SAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        90 ~~~~~~~~v~~Ll~~g~~  107 (113)
                      +..++.+++++|+++|++
T Consensus       267 ~~~~~~~iv~~Ll~~ga~  284 (301)
T 2b0o_E          267 RKKHHKECEELLEQAQAG  284 (301)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHhcCC
Confidence            777777777777666654

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.68  E-value=2.7e-18  Score=101.72  Aligned_cols=106  Identities=11%  Similarity=-0.031  Sum_probs=74.5

Q ss_pred             hhhhccccCCCchhHHHHHhhcc------CccccccccccchhccccchH-HHHHHHHhC-----CHHHHHHHHHh-CCC
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQE------GNIEYKAHTKTHKTFKTSNIL-QLIECIRSK-----DTDALIETIDS-GGV   73 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~~L~~-~~~   73 (113)
                      .+++..|..|+||+|+++..++.      ..+..+...|.+++.++..+. ++++++...     +...++++|++ .|+
T Consensus        66 advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga  145 (186)
T 3t8k_A           66 ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL  145 (186)
T ss_dssp             CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC
Confidence            35667889999999976533321      112222233334444444454 666666653     34568999999 999


Q ss_pred             CccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          74 EVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        74 ~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +++.+|..|+||||+|+..|+.+++++|.+.....+.++
T Consensus       146 d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          146 QLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             CTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999998765555544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.68  E-value=6.9e-17  Score=99.89  Aligned_cols=99  Identities=23%  Similarity=0.294  Sum_probs=79.8

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHc
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAF   92 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~   92 (113)
                      +..|+||+|+++..++...+..+...+......+..+.+++++|+..+..+++++|++.|++++..|..|.||||+|+..
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~  115 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVY  115 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHT
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHh
Confidence            66789999998876666666666655555555555566666666666666799999999999999999999999999999


Q ss_pred             CCHHHHHHHHHcCCCCCCC
Q psy2938          93 GTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        93 ~~~~~v~~Ll~~g~~~~~~  111 (113)
                      |+.+++++|+++|++++..
T Consensus       116 ~~~~~~~~Ll~~g~~~~~~  134 (285)
T 1wdy_A          116 GKVKALKFLYKRGANVNLR  134 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCC
T ss_pred             CCHHHHHHHHHhCCCcccc
Confidence            9999999999999988765

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.68  E-value=6.1e-17  Score=98.34  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=40.2

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          48 NILQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.++++.++..+..+++++|++.|++++..+ ..|.||||+|+..|+.+++++|+++|++++.+|
T Consensus       115 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  180 (241)
T 1k1a_A          115 DGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQM  180 (241)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBC
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            33344444444444456666666666666666 566777777777777777777777776666544

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.68  E-value=5.5e-17  Score=104.76  Aligned_cols=105  Identities=10%  Similarity=0.060  Sum_probs=66.4

Q ss_pred             hhhccc-cCCCchhHHHHHhhccCcccccc--------ccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCcccc
Q psy2938           8 AIQTFD-VGRYQPSHCQAALNQEGNIEYKA--------HTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFM   78 (113)
Q Consensus         8 ~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~   78 (113)
                      .++..| ..|.||+|+++..++...+..+.        ..+...+..+..+.+++++|+..+..+++++|++.|++++..
T Consensus       116 ~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~  195 (373)
T 2fo1_E          116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIY  195 (373)
T ss_dssp             TTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCC
T ss_pred             cccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCccc
Confidence            445555 56777777777665555555443        334444545555555555555555556777777777777777


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcC---CCCCCCC
Q psy2938          79 DDVGQTLLNWASAFGTQEMVEFLCERG---ADVNKGK  112 (113)
Q Consensus        79 d~~g~tpL~~A~~~~~~~~v~~Ll~~g---~~~~~~d  112 (113)
                      |..|.||||+|+..|+.+++++|+++|   ++++..|
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d  232 (373)
T 2fo1_E          196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD  232 (373)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCC
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcC
Confidence            777777777777777777777777666   5555443

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.67  E-value=3e-17  Score=106.13  Aligned_cols=64  Identities=20%  Similarity=0.251  Sum_probs=48.9

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          49 ILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +.+++++|+..+..+++++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       235 g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d  298 (368)
T 3jue_A          235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARD  298 (368)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcC
Confidence            3444555555555568888888888888888888888888888888888888888888887765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.67  E-value=6.7e-17  Score=101.97  Aligned_cols=65  Identities=15%  Similarity=0.163  Sum_probs=55.8

Q ss_pred             chHHHHHHHHhC---CHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          48 NILQLIECIRSK---DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        48 ~~~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.+++++|+..   +..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       189 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  256 (301)
T 2b0o_E          189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVN  256 (301)
T ss_dssp             CEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCC
T ss_pred             CCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            344444455443   66789999999999999999999999999999999999999999999999876

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.67  E-value=5.2e-17  Score=108.39  Aligned_cols=85  Identities=13%  Similarity=0.125  Sum_probs=65.0

Q ss_pred             HHhhccCccccccccccchhccccchHHHHHHHH---hCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHH
Q psy2938          24 AALNQEGNIEYKAHTKTHKTFKTSNILQLIECIR---SKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEF  100 (113)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~  100 (113)
                      .++.+|++++.....    ...+..+.+++++|+   ..+..+++++|++.|+++|.+|..|+||||+|+..|+.+++++
T Consensus       150 ~ll~~g~~~n~~~~~----~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~  225 (497)
T 3lvq_E          150 EAFANGQDFGQPLPG----PDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL  225 (497)
T ss_dssp             HHHHTTCCSSSCBCC----SSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHH
T ss_pred             HHHhhcccccCCCCC----cccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHH
Confidence            345566666554210    001334445555553   3667789999999999999999999999999999999999999


Q ss_pred             HHHcCCCCCCCC
Q psy2938         101 LCERGADVNKGK  112 (113)
Q Consensus       101 Ll~~g~~~~~~d  112 (113)
                      |+++|++++.+|
T Consensus       226 Ll~~ga~~~~~d  237 (497)
T 3lvq_E          226 LLKGRALVGTVN  237 (497)
T ss_dssp             HHHTCCCCSCCC
T ss_pred             HHHcCCCCCCcC
Confidence            999999999876

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.66  E-value=3.7e-17  Score=102.13  Aligned_cols=65  Identities=14%  Similarity=0.182  Sum_probs=56.3

Q ss_pred             chHHHHHHHHhC--CHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          48 NILQLIECIRSK--DTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        48 ~~~~~~~~~~~~--~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +.++++.++..+  +..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus       169 g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d  235 (278)
T 1dcq_A          169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIAN  235 (278)
T ss_dssp             TCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcc
Confidence            444555555552  66789999999999999999999999999999999999999999999999876

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.66  E-value=5.7e-18  Score=102.24  Aligned_cols=105  Identities=6%  Similarity=-0.025  Sum_probs=76.7

Q ss_pred             hhhccccCCCchhHHHHHhhccCcccccccc-ccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHT-KTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      +++..|..|+||+|+++..++...+..+... +...+.++..+.+++++|+..+..+++++|++.|++++.+|..|.|||
T Consensus        98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l  177 (222)
T 3ehr_A           98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF  177 (222)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHH
Confidence            4566788999999999887776667666655 666666666666677777666667899999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+|+..++.++++.|++.|++.+.++
T Consensus       178 ~~A~~~~~~~~l~~l~~~~~~~~~~~  203 (222)
T 3ehr_A          178 DMATNAACASLLKKKQGTDAVRTLSN  203 (222)
T ss_dssp             HHCCSHHHHHHHC-------------
T ss_pred             HHhcchhHHHHHHHHhccchhhhccc
Confidence            99999999999999999998776543

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.65  E-value=2.8e-16  Score=95.08  Aligned_cols=105  Identities=15%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhcc-ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFK-TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      +++..+..|.||+|+++..++-..+..+...+...... ...+.++++.|+..+..+++++|++.|++++..+..|.|||
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l  113 (240)
T 3eu9_A           34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCI  113 (240)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHH
Confidence            45567788899999888766655555555444333322 22233445555545555688999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+|+..++.+++++|+++|++++.++
T Consensus       114 ~~A~~~~~~~~~~~Ll~~~~~~~~~~  139 (240)
T 3eu9_A          114 HLAAQFGHTSIVAYLIAKGQDVDMMD  139 (240)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             HHHHHcCHHHHHHHHHhcCCCccccC
Confidence            99999999999999999999888764

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.65  E-value=9.5e-16  Score=83.47  Aligned_cols=66  Identities=27%  Similarity=0.325  Sum_probs=55.3

Q ss_pred             cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          47 SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..+.++++.|+..+..+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        22 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   87 (110)
T 2zgd_A           22 SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQD   87 (110)
T ss_dssp             CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            344444445554445568999999999999999999999999999999999999999999998876

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.64  E-value=1.4e-16  Score=103.06  Aligned_cols=99  Identities=13%  Similarity=0.039  Sum_probs=78.8

Q ss_pred             hhhccc--cCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChH
Q psy2938           8 AIQTFD--VGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL   85 (113)
Q Consensus         8 ~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tp   85 (113)
                      +++..+  ..|.||+|+++..++...+.++...+..++..+..+.+++++|+..+..+++++|++.|++++.+|..|.||
T Consensus       225 dvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~Tp  304 (368)
T 3jue_A          225 DVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP  304 (368)
T ss_dssp             CTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCH
Confidence            344455  789999999887666555666555566666666666666666666666789999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCC
Q psy2938          86 LNWASAFGTQEMVEFLCERGA  106 (113)
Q Consensus        86 L~~A~~~~~~~~v~~Ll~~g~  106 (113)
                      ||+|+..++.+++++|+..+.
T Consensus       305 L~~A~~~g~~~iv~lLl~~~~  325 (368)
T 3jue_A          305 LTIAMETANADIVTLLRLAKM  325 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHC
T ss_pred             HHHHHHCCCHHHHHHHHHcCC
Confidence            999999999999999998764

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.63  E-value=2.4e-16  Score=95.40  Aligned_cols=45  Identities=20%  Similarity=0.220  Sum_probs=21.4

Q ss_pred             HHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCC
Q psy2938          63 ALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        63 ~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      +++++|++.|++++.+|..|.|||++|+..++.+++++|+++|++
T Consensus       191 ~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~  235 (240)
T 3eu9_A          191 TVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA  235 (240)
T ss_dssp             HHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence            344444444455554444455555555555555555555544443

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.62  E-value=1.4e-16  Score=97.67  Aligned_cols=98  Identities=14%  Similarity=0.180  Sum_probs=79.2

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccc-cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKT-SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      +++..|..|+||+|+++..++...+..+...+...+.++ ..+.+++++|+..++.+++++|++.|++++.+|..|.|||
T Consensus        69 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l  148 (244)
T 3ui2_A           69 DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTAL  148 (244)
T ss_dssp             CTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Confidence            567788899999999988777777776666666666555 5565666666666677899999999999999999999999


Q ss_pred             HHHH----------------HcCCHHHHHHHHHcC
Q psy2938          87 NWAS----------------AFGTQEMVEFLCERG  105 (113)
Q Consensus        87 ~~A~----------------~~~~~~~v~~Ll~~g  105 (113)
                      |+|+                ..|+.+++++|++++
T Consensus       149 ~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~  183 (244)
T 3ui2_A          149 ELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQV  183 (244)
T ss_dssp             HHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence            9988                668899999999864

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.60  E-value=4.8e-16  Score=91.46  Aligned_cols=98  Identities=14%  Similarity=0.202  Sum_probs=75.2

Q ss_pred             hhhhccccCCCchhHHHHHhhccCccccccccccchhccc-cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChH
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKT-SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL   85 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tp   85 (113)
                      .+++..|..|+||+|+++..++...+..+...+...+..+ ..+.+++++|+..+..+++++|++.|++++.+|..|.||
T Consensus        67 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp  146 (183)
T 3deo_A           67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA  146 (183)
T ss_dssp             SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCH
Confidence            3566788899999999887776666666666666665555 556666666776677789999999999999999999999


Q ss_pred             HHHHHHc----------------CCHHHHHHHHHc
Q psy2938          86 LNWASAF----------------GTQEMVEFLCER  104 (113)
Q Consensus        86 L~~A~~~----------------~~~~~v~~Ll~~  104 (113)
                      ||+|+..                |+.+++++|.++
T Consensus       147 l~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~~~  181 (183)
T 3deo_A          147 LELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  181 (183)
T ss_dssp             HHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhccCcccccHHHHHHHcCHHHHHHHHHHh
Confidence            9999876                556777776543

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.59  E-value=2.5e-16  Score=100.15  Aligned_cols=97  Identities=8%  Similarity=0.047  Sum_probs=73.2

Q ss_pred             hhhc-cccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCH---HHHHHHHHhCC-CCccccCCCC
Q psy2938           8 AIQT-FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDT---DALIETIDSGG-VEVNFMDDVG   82 (113)
Q Consensus         8 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~L~~~~-~~~~~~d~~g   82 (113)
                      +++. .|..|+||+|+++..++...+..+...+...+.++..+.+++++|+..++   .++++.|++.+ ++++.+|..|
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g  201 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMN  201 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTC
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCC
Confidence            3455 78899999999887776666666666666666666666666777766655   33444555443 7899999999


Q ss_pred             ChHHHHHHH----cCCHHHHHHHHHc
Q psy2938          83 QTLLNWASA----FGTQEMVEFLCER  104 (113)
Q Consensus        83 ~tpL~~A~~----~~~~~~v~~Ll~~  104 (113)
                      +||||+|+.    .|+.+++++|++.
T Consensus       202 ~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          202 RTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             CCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHccccccHHHHHHHHHH
Confidence            999999999    8999999999987

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.59  E-value=7.6e-15  Score=81.11  Aligned_cols=63  Identities=24%  Similarity=0.283  Sum_probs=53.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          50 LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .++++.++..+..+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++.+|
T Consensus         8 ~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d   70 (123)
T 3aaa_C            8 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD   70 (123)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             chHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCC
Confidence            344444554445568888999999999999999999999999999999999999999998876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.59  E-value=3.4e-15  Score=83.91  Aligned_cols=65  Identities=25%  Similarity=0.169  Sum_probs=54.9

Q ss_pred             cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          47 SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.++++.++..+ ..+++++|++.|++++.+|..|+||||+|+..++.+++++|+++|++++.+|
T Consensus         9 ~g~t~L~~A~~~~-~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~   73 (137)
T 3c5r_A            9 RGETLLHIASIKG-DIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTG   73 (137)
T ss_dssp             TCCCHHHHHHHHT-CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCHHHHHHHcC-CHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcC
Confidence            3444555555555 4568899999999999999999999999999999999999999999998775

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.57  E-value=1.6e-15  Score=82.95  Aligned_cols=67  Identities=25%  Similarity=0.311  Sum_probs=55.9

Q ss_pred             ccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          46 TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +..+.++++.|+..+..+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.+|
T Consensus         6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d   72 (115)
T 2l6b_A            6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARS   72 (115)
T ss_dssp             SCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccC
Confidence            3444445555555445579999999999999999999999999999999999999999999998765

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.47  E-value=1.8e-15  Score=98.12  Aligned_cols=99  Identities=8%  Similarity=0.002  Sum_probs=53.9

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccch---hccccchHHHHHHHHhCCHHHHHHHHHhCCCCc---cccCCCC
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHK---TFKTSNILQLIECIRSKDTDALIETIDSGGVEV---NFMDDVG   82 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~---~~~d~~g   82 (113)
                      +...+..+.||+|+++..++-..+..+...+...   ...+..+.+++++|+..++.+++++|++.|+++   +..+.+ 
T Consensus        85 l~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-  163 (376)
T 2aja_A           85 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-  163 (376)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-
T ss_pred             HHHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-
Confidence            3344555667777777666555555554333311   011222334555555555556777777776542   222222 


Q ss_pred             ChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy2938          83 QTLLNWASAFGTQEMVEFLCERGADV  108 (113)
Q Consensus        83 ~tpL~~A~~~~~~~~v~~Ll~~g~~~  108 (113)
                      .||||+|+..|+.+++++|+++|+++
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~  189 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTE  189 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCcc
Confidence            67777777777777777777777664

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.45  E-value=1.3e-14  Score=94.09  Aligned_cols=95  Identities=9%  Similarity=0.121  Sum_probs=75.1

Q ss_pred             ccccCCCchhHHHHHhhccCccccccccccc---hhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccc--cCCCCChH
Q psy2938          11 TFDVGRYQPSHCQAALNQEGNIEYKAHTKTH---KTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNF--MDDVGQTL   85 (113)
Q Consensus        11 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~--~d~~g~tp   85 (113)
                      .++..+.||+|+++..++...+.++...+..   ......+ .++++.|+..++.+++++|++.|++++.  .|..|.||
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~Tp  201 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYA  201 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCH
Confidence            3455678899999999998888888866642   2222333 6666777777777899999999999887  88889999


Q ss_pred             HHHHH-HcCCHHHHHHHHHcCC
Q psy2938          86 LNWAS-AFGTQEMVEFLCERGA  106 (113)
Q Consensus        86 L~~A~-~~~~~~~v~~Ll~~g~  106 (113)
                      ||+|+ ..|+.+++++|+++|+
T Consensus       202 L~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          202 FRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHHHHHHCCCHHHHHHHHhCCC
Confidence            99999 9999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	113
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	6e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	0.003
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	5e-07
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	8e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-05
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	0.002
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.002
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.004

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 3e-09
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 52  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           LI  +  K    +   ++   +E+N  D  G+T L  A     +++ E LC+RGA  +
Sbjct: 223 LILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD 280

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 4e-04
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 55  CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCER-GADVNK 110
                D +A+   +   G +VN   + G+T L  A       +V+ L E+   ++N 
Sbjct: 192 SSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 3e-07
 Identities = 11/39 (28%), Positives = 19/39 (48%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           G   N  +   +T L+ A+  G  E+ ++L +  A VN 
Sbjct: 23  GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-05
 Identities = 14/102 (13%), Positives = 26/102 (25%)

Query: 9   IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETI 68
                   + P H  A       +      +  +   T      +          + E +
Sbjct: 92  PNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELL 151

Query: 69  DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                  N     G T L+ A      ++V+ L  RG   + 
Sbjct: 152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS 193

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 6e-05
 Identities = 10/35 (28%), Positives = 18/35 (51%)

Query: 76  NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           N    +G + L+ A+  G  ++V  L + GA  N+
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE 358

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 7e-05
 Identities = 17/92 (18%), Positives = 30/92 (32%)

Query: 19  PSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFM 78
           P HC A +     ++       +    T+     +     +     +  +         M
Sbjct: 69  PLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACM 128

Query: 79  DDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
              G T L+ A+ +G   + E L ER A  N 
Sbjct: 129 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 160

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 84  TLLNWASAFGTQEMVEFLCERGADVNK 110
           T L+ AS  G   +V+ L +RGA  N 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNV 28

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.003
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 5/105 (4%)

Query: 9   IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQ-LIECIRSKDTDALIET 67
           +       Y P H  +       +++    +     KT      L +  +   TD ++  
Sbjct: 290 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD-IVTL 348

Query: 68  IDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL---CERGADVN 109
           +   G   N +   G T L  A   G   + + L    +  + V 
Sbjct: 349 LLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVL 393

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.3 bits (103), Expect = 5e-07
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 45  KTSNILQLIECIRSKDTDALIETIDSGGVEVNF-MDDVGQTLLNWASAFGTQEMVEFLCE 103
             S+  Q            + +   +  + +N  +D+ G T L+W ++    E+V+ L +
Sbjct: 69  GGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK 128

Query: 104 RGADVNK 110
            G++   
Sbjct: 129 HGSNRLY 135

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 8e-07
 Identities = 16/95 (16%), Positives = 30/95 (31%)

Query: 15  GRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVE 74
           G    +     +     ++ +       T +  +        R       ++        
Sbjct: 192 GCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM 251

Query: 75  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +N  D  G T LN A+  G   +V+ L + GAD  
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPF 286

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.5 bits (93), Expect = 1e-05
 Identities = 11/96 (11%), Positives = 24/96 (25%)

Query: 15  GRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVE 74
           G           + E     +         + +     +         +++E +   G +
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217

Query: 75  VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
                  G+T L  A       +   L   GA   +
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPE 253

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.4 bits (85), Expect = 1e-04
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 76  NFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
            ++ + G T L+ A     +  ++FL    A   
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE 36

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 40.1 bits (92), Expect = 1e-05
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 52  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           L    +  +   +   +   G   +  D+ G+T +  A+  G  E+V +L ++GA V  
Sbjct: 191 LHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEA 249

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 36.3 bits (82), Expect = 4e-04
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 56  IRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC--------ERGAD 107
             +  + A+ E I    V +       +T+L+W ++  + E  E L           GAD
Sbjct: 8   TEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 108 VN 109
           VN
Sbjct: 67  VN 68

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 38.3 bits (88), Expect = 6e-05
 Identities = 6/48 (12%), Positives = 13/48 (27%)

Query: 64  LIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG 111
            +  + +    V  +          A+  G   ++  LCE        
Sbjct: 108 TLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMA 155

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.5 bits (88), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 73  VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
            +VN  D  G T L+ A+ +G +E    L E   D+ 
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDME 259

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.9 bits (76), Expect = 0.002
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)

Query: 51  QLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNK 110
           + ++     +TD     +     +V F D     +   A + G  E V  L ERGAD+N 
Sbjct: 12  EQLKRWIGSETDLEPPVVKRKKTKVKFDDG---AVFLAACSSGDTEEVLRLLERGADINY 68

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 1e-04
 Identities = 17/91 (18%), Positives = 35/91 (38%)

Query: 19  PSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFM 78
             H   +      +E+          K       +    S   D +++ +   G +VN +
Sbjct: 40  ALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAV 99

Query: 79  DDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           +  G T L++A++    E+   L E GA+ +
Sbjct: 100 NQNGCTPLHYAASKNRHEIAVMLLEGGANPD 130

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 46  TSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLC 102
            SN++ +     S   + L E+I +        D   +T L+WA + G  E+VEFL 
Sbjct: 2   VSNLM-VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLL 57

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.1 bits (82), Expect = 2e-04
 Identities = 11/72 (15%), Positives = 31/72 (43%), Gaps = 8/72 (11%)

Query: 46  TSNILQLIECIRSKDTDALIETIDSG-----GVEVNFMDDVGQTLLNWASAF---GTQEM 97
            + +  L E ++++D   L++    G      + +    +  +T L+ A       +  +
Sbjct: 4   AAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHI 63

Query: 98  VEFLCERGADVN 109
           V+FL +   +++
Sbjct: 64  VDFLVQNSGNLD 75

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.7 bits (81), Expect = 3e-04
 Identities = 10/92 (10%), Positives = 27/92 (29%), Gaps = 3/92 (3%)

Query: 19  PSHCQAALNQEGNIE---YKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEV 75
             H         ++    +      +   +T      +      D    ++ +  G   +
Sbjct: 48  ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASI 107

Query: 76  NFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
              ++ G+T L+ A     +   E L +  + 
Sbjct: 108 EIANESGETPLDIAKRLKHEHCEELLTQALSG 139

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (80), Expect = 5e-04
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 66  ETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVN 109
           + +   G  VN     G + L+ AS  G   +V  L   GAD +
Sbjct: 161 QLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 35.2 bits (79), Expect = 6e-04
 Identities = 9/53 (16%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 55  CIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
            +     DA +  ++  G E + +D+ G    + A     +++ +F      D
Sbjct: 179 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVAL---NEQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.8 bits (78), Expect = 0.001
 Identities = 11/54 (20%), Positives = 22/54 (40%)

Query: 52  LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG 105
           L +     +   + E + S    +   D  G+  L+W+ +F   E+  FL  + 
Sbjct: 4   LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 32.9 bits (73), Expect = 0.004
 Identities = 5/36 (13%), Positives = 13/36 (36%)

Query: 72  GVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGAD 107
           G +VN +   G +         +  + + L +   +
Sbjct: 168 GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	113
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.84
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.8
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.78
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.77
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.76
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.76
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.73
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.72
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.7
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.69
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.69
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.68
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.67
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.66
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.65
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.65
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.64
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.64
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.62
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.61
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.61
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.6
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.6
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.6
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.58
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.57
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.57
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.57
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.56
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.55
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.53
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.5
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.5
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.47
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.43
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.06

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=1.4e-22  Score=110.96  Aligned_cols=95  Identities=14%  Similarity=0.014  Sum_probs=67.6

Q ss_pred             chhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHH
Q psy2938          18 QPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEM   97 (113)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~   97 (113)
                      ||+++|+..++-..+..+...+.+.+..+..+.+++++|+..+..+++++|++.|++++.+|..|+||||+|+..|+.++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~   83 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSC   83 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhh
Confidence            34554443333333333333333333334444455555555555679999999999999999999999999999999999


Q ss_pred             HHHHHHcCCCCCCCC
Q psy2938          98 VEFLCERGADVNKGK  112 (113)
Q Consensus        98 v~~Ll~~g~~~~~~d  112 (113)
                      +++|+++|++++.+|
T Consensus        84 v~~Ll~~Gad~~~~d   98 (118)
T d1myoa_          84 VKLLLSKGADKTVKG   98 (118)
T ss_dssp             HHHHHTTCCCSSSSS
T ss_pred             hhhhhcccccceeeC
Confidence            999999999999876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.1e-21  Score=107.08  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=65.0

Q ss_pred             HHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q psy2938          22 CQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL  101 (113)
Q Consensus        22 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~L  101 (113)
                      ++.++.+|++++..+          ..+.+++++|+..+..+++++|++.|++++.+|.+|+||||+|+..|+.+++++|
T Consensus        17 v~~Ll~~g~d~n~~d----------~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~L   86 (130)
T d1ycsb1          17 VQRIIYEVDDPSLPN----------DEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL   86 (130)
T ss_dssp             HHHHTSTTSSCCCCC----------TTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCCCccccc----------cccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHH
Confidence            444555666665544          4444556666666666799999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q psy2938         102 CERGADVNKGK  112 (113)
Q Consensus       102 l~~g~~~~~~d  112 (113)
                      +++|++++..+
T Consensus        87 l~~ga~v~~~~   97 (130)
T d1ycsb1          87 VESGAAVFAMT   97 (130)
T ss_dssp             HHTTCCTTCCC
T ss_pred             HHcCCCccccc
Confidence            99999998754

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=7e-20  Score=109.50  Aligned_cols=105  Identities=16%  Similarity=0.123  Sum_probs=85.7

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..|..|.||+|+++..++...+..+.+.+...+..+..+.++++++...+...+.++|...+.+++.+|..|+||||
T Consensus        95 d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~  174 (223)
T d1uoha_          95 QVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLH  174 (223)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHH
T ss_pred             eeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceec
Confidence            45678899999999988766555555555555555555556666677777777778999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          88 WASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|+..|+.+++++|++.|++++.+|
T Consensus       175 ~Aa~~g~~~~v~~LL~~Gad~~~~d  199 (223)
T d1uoha_         175 LACDEERVEEAKLLVSQGASIYIEN  199 (223)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             cccccCcHHHHHHHHHCCCCCCCCC
Confidence            9999999999999999999999876

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.8e-19  Score=107.64  Aligned_cols=106  Identities=17%  Similarity=0.196  Sum_probs=78.9

Q ss_pred             hhhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHH
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLL   86 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL   86 (113)
                      ..++..|..|+||+|+|+..++...+++................+++..+...++.+++++|++.|++++.+|..|.|||
T Consensus        28 ~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL  107 (223)
T d1uoha_          28 SLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPL  107 (223)
T ss_dssp             GGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             CcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchh
Confidence            34667899999999999988877766665543333333333344444445555555788888888899988888899999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |+|+..++.+++++|+++|++++.+|
T Consensus       108 ~~A~~~~~~e~~~~Ll~~g~d~~~~~  133 (223)
T d1uoha_         108 HYAASKNRHEIAVMLLEGGANPDAKD  133 (223)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             hHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            99999999999999999898887665

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=3.7e-19  Score=101.23  Aligned_cols=96  Identities=10%  Similarity=0.087  Sum_probs=72.9

Q ss_pred             cccCCCchhHHHHHhhccC---ccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEG---NIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      .+..|.||+|+++..+...   .+..+...+.+++.++..+.+++++|+..+..+++++|++.|++++.+|..|.||||+
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHH
Confidence            3567899999877543221   2333344455555556666666777777777789999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHcCCC
Q psy2938          89 ASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        89 A~~~~~~~~v~~Ll~~g~~  107 (113)
                      |+..|+.+++++|++.++.
T Consensus       121 A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             HHHTTCHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHhCCC
Confidence            9999999999999987653

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=4.7e-19  Score=107.17  Aligned_cols=101  Identities=11%  Similarity=0.044  Sum_probs=75.1

Q ss_pred             hhhhccccCCCchhHHHHHhhccCccccccccccchhc-cccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChH
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTF-KTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL   85 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tp   85 (113)
                      ..++..+..|.||+|+++..++-..+..+...+..... +...+.++++.|+..+..+++++|++.|++++.+|..|.||
T Consensus       149 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~  228 (255)
T d1oy3d_         149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (255)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            34567788999999998765544444444332222221 23334445555555556679999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Q psy2938          86 LNWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        86 L~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      ||+|+..++.+++++|+++||+
T Consensus       229 L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         229 LGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999996

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.9e-18  Score=104.85  Aligned_cols=83  Identities=24%  Similarity=0.367  Sum_probs=64.4

Q ss_pred             HHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCChHHHHHHHcCCHHHHH
Q psy2938          21 HCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDS-GGVEVNFMDDVGQTLLNWASAFGTQEMVE   99 (113)
Q Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~~g~tpL~~A~~~~~~~~v~   99 (113)
                      ....|+++|++++..+         ..+.++++ .++..+..+++++|+. .|++++.+|.+|.||||+|+..|+.++++
T Consensus       201 i~~~Li~~ga~~n~~~---------~~g~t~L~-~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~  270 (285)
T d1wdya_         201 ITHLLLDHGADVNVRG---------ERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             HHHHHHHTTCCSSCCC---------TTSCCHHH-HHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHCCCCCCccC---------CCCCCccc-hhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            3445566677666544         23344444 4444445578888886 69999999999999999999999999999


Q ss_pred             HHHHcCCCCCCCCC
Q psy2938         100 FLCERGADVNKGKL  113 (113)
Q Consensus       100 ~Ll~~g~~~~~~d~  113 (113)
                      +|+++|||+|++|.
T Consensus       271 ~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         271 LLCKRGASTDCGDL  284 (285)
T ss_dssp             HHHHHSSCSCCSSC
T ss_pred             HHHHCCCCCCcccC
Confidence            99999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.6e-18  Score=95.41  Aligned_cols=86  Identities=9%  Similarity=0.154  Sum_probs=55.9

Q ss_pred             hhccccCCCchhHH---------HHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC
Q psy2938           9 IQTFDVGRYQPSHC---------QAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMD   79 (113)
Q Consensus         9 ~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d   79 (113)
                      ++..+..|.||+|+         ++|+.+|++++..+         ..+..+++++++..+..+++++|++.|++++.+|
T Consensus        29 ~n~~~~~g~t~l~~a~~g~~~~v~~Ll~~ga~~~~~~---------~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d   99 (125)
T d1bi7b_          29 PNAPNSYGRRPIQVMMMGSARVAELLLLHGAEPNCAD---------PATLTRPVHDAAREGFLDTLVVLHRAGARLDVRD   99 (125)
T ss_dssp             TTCCCSSSCCTTTSSCTTCHHHHHHHHTTTCCCCCCC---------TTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCC
T ss_pred             ccccccccccccccccccccccccccccccccccccc---------cccccccccccccccccccccccccccccccccc
Confidence            45556667776654         34444555444433         2233344555554455567888888888888888


Q ss_pred             CCCChHHHHHHHcCCHHHHHHHHH
Q psy2938          80 DVGQTLLNWASAFGTQEMVEFLCE  103 (113)
Q Consensus        80 ~~g~tpL~~A~~~~~~~~v~~Ll~  103 (113)
                      ..|+||||+|+..|+.+++++|+.
T Consensus       100 ~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_         100 AWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh
Confidence            888888888888888888888763

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.3e-19  Score=96.33  Aligned_cols=95  Identities=15%  Similarity=0.041  Sum_probs=73.6

Q ss_pred             CchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCC-hHHHHHHHcCCH
Q psy2938          17 YQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQ-TLLNWASAFGTQ   95 (113)
Q Consensus        17 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~-tpL~~A~~~~~~   95 (113)
                      .+++|+++..++-..+..+.+.+.+.+..+..+.++++++..+ +.+++++|++.|++++.++..+. ||||+|+..|+.
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~~g-~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~   82 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMG-SARVAELLLLHGAEPNCADPATLTRPVHDAAREGFL   82 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSCTT-CHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            4566666666655555555555555555566666777777655 45799999999999999987765 699999999999


Q ss_pred             HHHHHHHHcCCCCCCCC
Q psy2938          96 EMVEFLCERGADVNKGK  112 (113)
Q Consensus        96 ~~v~~Ll~~g~~~~~~d  112 (113)
                      +++++|+++|++++.+|
T Consensus        83 ~~v~~Ll~~ga~~~~~d   99 (125)
T d1bi7b_          83 DTLVVLHRAGARLDVRD   99 (125)
T ss_dssp             HHHHHHHHHTCCSSCCC
T ss_pred             ccccccccccccccccc
Confidence            99999999999999876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.1e-17  Score=93.16  Aligned_cols=101  Identities=25%  Similarity=0.276  Sum_probs=68.8

Q ss_pred             cccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHH
Q psy2938          12 FDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASA   91 (113)
Q Consensus        12 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~   91 (113)
                      .+..|+||+|++...++...+..................+..+.+......+.++++...+++.+.+|..|+||||+|+.
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~  109 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATE  109 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccccccccccccccccccccccceeeecccccCCccccccccCchHHHhhhh
Confidence            57889999999887665554443332222222222222233434444444457788888888888888888999999999


Q ss_pred             cCCHHHHHHHHHcCCCCCCCC
Q psy2938          92 FGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        92 ~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .|+.+++++|+++|++++.+|
T Consensus       110 ~g~~~iv~~ll~~gad~~~~d  130 (153)
T d1awcb_         110 HNHQEVVELLIKYGADVHTQS  130 (153)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCC
T ss_pred             cchhheeeeccccccCCcccC
Confidence            999999998888888888765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=1.3e-17  Score=98.10  Aligned_cols=93  Identities=12%  Similarity=0.057  Sum_probs=61.3

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNW   88 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~   88 (113)
                      ++..+..|+||+++++..+....+......+...+..+..+.++++.++..+..+++++|++.|++++.+|..|+||||+
T Consensus       116 ~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~  195 (209)
T d1ot8a_         116 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDV  195 (209)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             ccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHH
Confidence            45567778888887764433333332222233333334444455555555556678888888888888888888888888


Q ss_pred             HHHcCCHHHHHHH
Q psy2938          89 ASAFGTQEMVEFL  101 (113)
Q Consensus        89 A~~~~~~~~v~~L  101 (113)
                      |+..|+.++|++|
T Consensus       196 A~~~~~~~iv~lL  208 (209)
T d1ot8a_         196 ASERLHHDIVRLL  208 (209)
T ss_dssp             HHHTTCHHHHHHH
T ss_pred             HHHcCCHHHHhhc
Confidence            8888888888876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.69  E-value=7.1e-18  Score=102.77  Aligned_cols=44  Identities=30%  Similarity=0.281  Sum_probs=28.7

Q ss_pred             HhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          69 DSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        69 ~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++.|+|+|.+|.+|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        61 l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~  104 (277)
T d2fo1e1          61 IAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYN  104 (277)
T ss_dssp             HHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCC
T ss_pred             HHcCCCccccCCCCCeeecccccccccccccccccccccccccc
Confidence            35566666666666666666666666666666666666666543

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2e-17  Score=105.35  Aligned_cols=51  Identities=24%  Similarity=0.294  Sum_probs=31.0

Q ss_pred             HHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          62 DALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        62 ~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..+++.+++.|++++.+|..|.||||+|+..|+.++|++|+++|++++.+|
T Consensus       310 ~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d  360 (408)
T d1n11a_         310 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVS  360 (408)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCC
T ss_pred             ceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            345555555666666666666666666666666666666666666666544

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.7e-16  Score=90.08  Aligned_cols=86  Identities=13%  Similarity=0.142  Sum_probs=64.2

Q ss_pred             HHhhccCccccccccccchhccccchHHHHHHHHh--CCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHH
Q psy2938          24 AALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRS--KDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFL  101 (113)
Q Consensus        24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~L  101 (113)
                      .++..|.++.......   .....+.++++.++..  .+..+++++|++.|++++.+|..|+||||+|+..|+.+++++|
T Consensus        24 ~~~~~g~d~~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~L  100 (154)
T d1dcqa1          24 QAYADGVDLTEKIPLA---NGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLL  100 (154)
T ss_dssp             HHHHTTCCTTSBCCCS---SCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHcCCCcCCCCCcc---cCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccc
Confidence            3456677665432110   0112334455555543  3566899999999999999999999999999999999999999


Q ss_pred             HHcCCCCCCCC
Q psy2938         102 CERGADVNKGK  112 (113)
Q Consensus       102 l~~g~~~~~~d  112 (113)
                      +++|++++.+|
T Consensus       101 l~~gad~~~~d  111 (154)
T d1dcqa1         101 LRGKASIEIAN  111 (154)
T ss_dssp             HHTTCCTTCCC
T ss_pred             cccCccccccC
Confidence            99999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-17  Score=93.11  Aligned_cols=94  Identities=14%  Similarity=0.138  Sum_probs=55.3

Q ss_pred             hhhccccCCCchhHHHH---------HhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCcccc
Q psy2938           8 AIQTFDVGRYQPSHCQA---------ALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFM   78 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~---------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~   78 (113)
                      +++..|..|+||+|++.         ++.++.+++...          ..+.++++.+...+..++.+++++.+++++.+
T Consensus        28 ~~n~~d~~g~t~L~~A~~~~~~~v~~Ll~~~~~~~~~~----------~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~   97 (156)
T d1bd8a_          28 HPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQD----------TSGTSPVHDAARTGFLDTLKVLVEHGADVNVP   97 (156)
T ss_dssp             CTTCCCTTSCCHHHHSCTTCHHHHHHHHHTTCCTTCCC----------TTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             CCCccCCCCCcccccccccccccccccccccccccccc----------cccccccccccccccccccccccccccccccc
Confidence            45677888999998764         344444444332          22333334444444445666666666666666


Q ss_pred             CCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          79 DDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        79 d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      |..|.||||+|+..|+.+++++|+ .|++++.+|
T Consensus        98 ~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d  130 (156)
T d1bd8a_          98 DGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRD  130 (156)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCC
T ss_pred             cCCCCeeecccccccccccccccc-ccccccccC
Confidence            666666666666666666666555 456665544

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.3e-17  Score=99.61  Aligned_cols=99  Identities=10%  Similarity=0.047  Sum_probs=77.1

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccccc---hhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTH---KTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTL   85 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tp   85 (113)
                      |..++..|.||+|+++..++...+..+...+..   .+.++..+.+++++|+..+..+++++|++.|++++.+|..|.||
T Consensus         2 ~~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            567889999999998887776666655443322   33344445556666666666779999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHcCCC
Q psy2938          86 LNWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        86 L~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      ||+|+..++.+++++|++.+..
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~  103 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPS  103 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCS
T ss_pred             hhhhhccCchHHHHHHHhhccc
Confidence            9999999999999999887654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.65  E-value=1.5e-17  Score=105.21  Aligned_cols=102  Identities=7%  Similarity=-0.013  Sum_probs=80.3

Q ss_pred             hhhhccccCCCchhHHHHHhhccCccc---cccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccC--CC
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIE---YKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMD--DV   81 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d--~~   81 (113)
                      ..+...+..|.||+++++..++...++   .+...+..++..+..+.+++++|+..++.+++++|++.|++++..+  ..
T Consensus        81 ~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~  160 (346)
T d2ajaa1          81 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE  160 (346)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH
T ss_pred             hHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccC
Confidence            345566778999999998877754443   3446677777777778888888888888899999999999999876  46


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy2938          82 GQTLLNWASAFGTQEMVEFLCERGADV  108 (113)
Q Consensus        82 g~tpL~~A~~~~~~~~v~~Ll~~g~~~  108 (113)
                      |.||||+|+..|+.++|++|++.|++.
T Consensus       161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         161 NYHAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             CCChhHHHHHHhhHHHHHHHHHcCCcc
Confidence            999999999999999999999998753

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=1.2e-16  Score=99.15  Aligned_cols=38  Identities=34%  Similarity=0.420  Sum_probs=36.0

Q ss_pred             ccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          75 VNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        75 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +|.+|..|+||||+|+..|+.++|++|+++|++++.+|
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n  289 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN  289 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            67889999999999999999999999999999999876

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=8.8e-17  Score=91.09  Aligned_cols=96  Identities=16%  Similarity=0.127  Sum_probs=66.4

Q ss_pred             hhhccccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           8 AIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      +++..+..+.+|++.+...++...+......+...+.++..+.++++.|+..+..+++++|+ .|++++.+|..|+||||
T Consensus        60 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLE  138 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHH
Confidence            34556677888888765444333333333333333333444445555555555567889887 58999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHc
Q psy2938          88 WASAFGTQEMVEFLCER  104 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~~  104 (113)
                      +|+..|+.+++++|++|
T Consensus       139 ~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         139 LALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHSCCHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHhh
Confidence            99999999999999976

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.5e-16  Score=93.56  Aligned_cols=106  Identities=20%  Similarity=0.189  Sum_probs=73.6

Q ss_pred             hhhhccccCCCchhHHHHHh----------hccCcccccccccc---chhc--------------------------ccc
Q psy2938           7 KAIQTFDVGRYQPSHCQAAL----------NQEGNIEYKAHTKT---HKTF--------------------------KTS   47 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~----------~~~~~~~~~~~~~~---~~~~--------------------------~~~   47 (113)
                      ..++..|..|.||+|+++..          ++|++++..+..+.   ....                          ...
T Consensus        30 ~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  109 (221)
T d1iknd_          30 AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY  109 (221)
T ss_dssp             CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             CCcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccc
Confidence            34667788999999998764          45555554331110   0000                          011


Q ss_pred             chHHHHHHHHhCCHHHHHHHHHhCCCCccccC-CCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          48 NILQLIECIRSKDTDALIETIDSGGVEVNFMD-DVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .+.++++.++..+..+.+++|+..|..++..+ ..|+||||+|+..|+.+++++|+++|+|++.+|
T Consensus       110 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~  175 (221)
T d1iknd_         110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVT  175 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCC
T ss_pred             ccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccC
Confidence            12344455555555567788888888888775 689999999999999999999999999999876

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7e-16  Score=85.14  Aligned_cols=60  Identities=27%  Similarity=0.344  Sum_probs=52.8

Q ss_pred             HHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          52 LIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        52 ~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ++.++..|+. +++++|++.|++++.+|.+|+||||+|+..++.+++++|++.|++++.+|
T Consensus         5 L~~A~~~G~~-~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d   64 (130)
T d1ycsb1           5 LLDSSLEGEF-DLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAAD   64 (130)
T ss_dssp             HHHHHHHTCH-HHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCC
T ss_pred             HHHHHHcCCH-HHHHHHHHcCCCcccccccccccccccccccccccccccccccccccccc
Confidence            3444455555 68999999999999999999999999999999999999999999999876

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2.4e-16  Score=100.31  Aligned_cols=94  Identities=16%  Similarity=0.168  Sum_probs=74.4

Q ss_pred             CchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHH
Q psy2938          17 YQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQE   96 (113)
Q Consensus        17 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~   96 (113)
                      .||||.|+..++-..+..+...|.+++..+..+.+++++|+..++.+++++|++.|++++.++..|+||||+|+..|+.+
T Consensus         1 ~TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g~~~   80 (408)
T d1n11a_           1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTN   80 (408)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHH
T ss_pred             CChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHH
Confidence            48999888766666666665555555555665666666666666678999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCCCCC
Q psy2938          97 MVEFLCERGADVNK  110 (113)
Q Consensus        97 ~v~~Ll~~g~~~~~  110 (113)
                      ++++|+..+.++..
T Consensus        81 ~~~~Ll~~~~~~~~   94 (408)
T d1n11a_          81 MVKLLLENNANPNL   94 (408)
T ss_dssp             HHHHHHHHTCCTTC
T ss_pred             HHHHHHHhhhcccc
Confidence            99999988776543

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=4.8e-16  Score=92.42  Aligned_cols=63  Identities=29%  Similarity=0.243  Sum_probs=49.8

Q ss_pred             hHHHHHHHHhCCHHHHHHHHHhCC-CCccccCCCCChHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Q psy2938          49 ILQLIECIRSKDTDALIETIDSGG-VEVNFMDDVGQTLLNWASAFGTQEMVEFLCE-RGADVNKGK  112 (113)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~g~~~~~~d  112 (113)
                      .++++.++..++ .+++++|++.+ .+++.+|.+|+||||+|+..|+.+++++|++ .|++++.+|
T Consensus       139 ~t~l~~a~~~~~-~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d  203 (229)
T d1ixva_         139 QIPLHRAASVGS-LKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVD  203 (229)
T ss_dssp             CCHHHHHHHHTC-HHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCC
T ss_pred             CCccchhhhccc-ccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcC
Confidence            344444444554 46788888765 7889999999999999999999999999996 599999876

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.60  E-value=3.2e-16  Score=95.30  Aligned_cols=95  Identities=13%  Similarity=0.092  Sum_probs=66.9

Q ss_pred             hhccccCCCchhHHHHHhhccCcccccc-ccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKA-HTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLN   87 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~   87 (113)
                      ....+..|+||+|++...++........ ..+.....++..+.++++.|+..+..+++++|++.|++++.+|..|+||||
T Consensus       180 ~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~  259 (277)
T d2fo1e1         180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ  259 (277)
T ss_dssp             TSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred             ccccccCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHH
Confidence            3445677899998875443322222211 233333334455555555555555567999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHH
Q psy2938          88 WASAFGTQEMVEFLCE  103 (113)
Q Consensus        88 ~A~~~~~~~~v~~Ll~  103 (113)
                      +|+..|+.++|++|++
T Consensus       260 ~A~~~~~~~iv~lL~~  275 (277)
T d2fo1e1         260 LAQANNHHNIVDIFDR  275 (277)
T ss_dssp             HHHHTTCHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            9999999999999985

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.60  E-value=7.2e-16  Score=83.79  Aligned_cols=62  Identities=24%  Similarity=0.325  Sum_probs=54.0

Q ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          50 LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      +++++ |+..+..+++++|++.|++++.+|..|+||||+|+..|+.+++++|++.|++++.+|
T Consensus         4 tpL~~-A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d   65 (118)
T d1myoa_           4 KEFMW-ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPD   65 (118)
T ss_dssp             HHHHH-HHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCS
T ss_pred             hHHHH-HHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecc
Confidence            34555 555555579999999999999999999999999999999999999999999999876

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1e-15  Score=86.08  Aligned_cols=89  Identities=13%  Similarity=0.158  Sum_probs=64.1

Q ss_pred             ccCCCchhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHc
Q psy2938          13 DVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAF   92 (113)
Q Consensus        13 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~   92 (113)
                      +..+.++.+.+....+...+......+.....++..+.+++++|+..+..+++++|++.|++++.+|..|.||||+|+..
T Consensus        64 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~  143 (153)
T d1awcb_          64 TKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDN  143 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred             ccccccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHc
Confidence            34445565555443333333333333444444455666667777777777899999999999999999999999999999


Q ss_pred             CCHHHHHHH
Q psy2938          93 GTQEMVEFL  101 (113)
Q Consensus        93 ~~~~~v~~L  101 (113)
                      |+.+++++|
T Consensus       144 g~~eiv~lL  152 (153)
T d1awcb_         144 GNEDLAEIL  152 (153)
T ss_dssp             TCHHHHHHH
T ss_pred             CCHHHHHhC
Confidence            999999987

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.3e-15  Score=85.85  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=68.1

Q ss_pred             hhhccccCCCchhHH---------HHHhhccCcccccccc-----------------------ccchhccccchHHHHHH
Q psy2938           8 AIQTFDVGRYQPSHC---------QAALNQEGNIEYKAHT-----------------------KTHKTFKTSNILQLIEC   55 (113)
Q Consensus         8 ~~~~~~~~~~~~~~~---------~~l~~~~~~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~   55 (113)
                      +++..|..|+||+|+         ..++.++++++.....                       +......+..+.++++.
T Consensus        26 d~n~~d~~g~TpL~~A~~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~  105 (156)
T d1ihba_          26 NVNAQNGFGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHL  105 (156)
T ss_dssp             CTTCCCTTSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CcCccCCcccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccc
Confidence            466778889999887         4456777776654321                       22222234444555555


Q ss_pred             HHhCCHHHHHHHHHhCC-CCccccCCCCChHHHHHHHcCCHHHHHHHHHcC
Q psy2938          56 IRSKDTDALIETIDSGG-VEVNFMDDVGQTLLNWASAFGTQEMVEFLCERG  105 (113)
Q Consensus        56 ~~~~~~~~~~~~L~~~~-~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  105 (113)
                      +...+..+++++|++.+ .+++.+|..|.||||+|+..++.+++++|+++|
T Consensus       106 a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         106 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            65555566777777655 478888888999999999999999999998877

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=1.9e-15  Score=92.60  Aligned_cols=63  Identities=21%  Similarity=0.226  Sum_probs=54.6

Q ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          50 LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .++++.++..+..+++++|++.|++++.++..|+||||+|+..|+.++|++|+++|+|++.+|
T Consensus       200 ~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d  262 (291)
T d1s70b_         200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVN  262 (291)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcC
Confidence            344445555555579999999999999999999999999999999999999999999999886

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.57  E-value=2.9e-16  Score=93.35  Aligned_cols=96  Identities=14%  Similarity=0.102  Sum_probs=73.2

Q ss_pred             hhccccCCCchhHHHHHhhccCccccccccc-cchhccccchHHHHHHHHhCCHHHHHHHHHh-CCCCccccCCCCChHH
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKAHTK-THKTFKTSNILQLIECIRSKDTDALIETIDS-GGVEVNFMDDVGQTLL   86 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~~~~~~~~d~~g~tpL   86 (113)
                      ....+..|+||+|+++..++...+..+...+ ...+.++..+.+++++|+..+..+++++|++ .|++++.+|..|+|||
T Consensus       131 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l  210 (229)
T d1ixva_         131 VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAE  210 (229)
T ss_dssp             SCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTG
T ss_pred             ccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHH
Confidence            4456788999999988766655555554332 3444455556666667766667779999986 5999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHcCCC
Q psy2938          87 NWASAFGTQEMVEFLCERGAD  107 (113)
Q Consensus        87 ~~A~~~~~~~~v~~Ll~~g~~  107 (113)
                      |+|+   +.+++++|+++|+|
T Consensus       211 ~~A~---~~~~~~~Ll~~g~d  228 (229)
T d1ixva_         211 DVAL---NEQVKKFFLNNVVD  228 (229)
T ss_dssp             GGCS---CHHHHHHHHHHCCC
T ss_pred             HHHh---hHHHHHHHHHcCCC
Confidence            9998   46899999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.2e-15  Score=87.56  Aligned_cols=63  Identities=21%  Similarity=0.192  Sum_probs=54.2

Q ss_pred             HHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          50 LQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      .++++.+.......+.+.+++.|.+.+.+|..|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus       145 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d  207 (228)
T d1k1aa_         145 RSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKN  207 (228)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCC
T ss_pred             hhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            344455555555678888889999999999999999999999999999999999999999876

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.8e-14  Score=87.78  Aligned_cols=104  Identities=14%  Similarity=0.124  Sum_probs=73.6

Q ss_pred             hhccccCCCchhHHHHHhhccCcccccc-ccccchhccc----cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCC
Q psy2938           9 IQTFDVGRYQPSHCQAALNQEGNIEYKA-HTKTHKTFKT----SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQ   83 (113)
Q Consensus         9 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~   83 (113)
                      ....+..|.||+|+++..++...+..+. ..+......+    ......+.++..++...++++|++.|++++.+|..|.
T Consensus       141 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~  220 (285)
T d1wdya_         141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGK  220 (285)
T ss_dssp             HHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSC
T ss_pred             hhhhcccCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCC
Confidence            3445667899999877655333333222 1122222111    1223334445567788899999999999999999999


Q ss_pred             hHHHHHHHcCCHHHHHHHHH-cCCCCCCCC
Q psy2938          84 TLLNWASAFGTQEMVEFLCE-RGADVNKGK  112 (113)
Q Consensus        84 tpL~~A~~~~~~~~v~~Ll~-~g~~~~~~d  112 (113)
                      ||||+|+..|+.+++++|++ .|++++.+|
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~~d  250 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEINDTD  250 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCC
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcCCC
Confidence            99999999999999999997 589999876

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=9.9e-15  Score=85.53  Aligned_cols=66  Identities=14%  Similarity=0.047  Sum_probs=55.9

Q ss_pred             cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCC
Q psy2938          47 SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKGK  112 (113)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~d  112 (113)
                      ..+.++++.+...+...+++.++..+.+++..|..|.||||+|+..|+.+++++|+++|+|++.+|
T Consensus       121 ~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d  186 (209)
T d1ot8a_         121 NSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITD  186 (209)
T ss_dssp             TTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcC
Confidence            333445555555556678888999999999999999999999999999999999999999999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=7.5e-15  Score=87.10  Aligned_cols=95  Identities=13%  Similarity=0.050  Sum_probs=77.0

Q ss_pred             CCCchhHHHHHhhccCcccccc----ccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHH
Q psy2938          15 GRYQPSHCQAALNQEGNIEYKA----HTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWAS   90 (113)
Q Consensus        15 ~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~   90 (113)
                      .|.||+|+++..+....+..+.    ..+..++.++..+.+++++|+..+..+++++|++.|++++..|..|.|||++++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~   80 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLAC   80 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence            4899999998877654443322    345566667777778888888877888999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHHcCCCCC
Q psy2938          91 AFGTQEMVEFLCERGADVN  109 (113)
Q Consensus        91 ~~~~~~~v~~Ll~~g~~~~  109 (113)
                      ..++.++++.|+..+.+..
T Consensus        81 ~~~~~~~~~~l~~~~~~~~   99 (221)
T d1iknd_          81 EQGCLASVGVLTQSCTTPH   99 (221)
T ss_dssp             HHTCHHHHHHHHHSTTTTS
T ss_pred             ccccccccchhhhhccccc
Confidence            9999999999999877644

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.50  E-value=7.4e-17  Score=101.93  Aligned_cols=102  Identities=7%  Similarity=0.024  Sum_probs=78.5

Q ss_pred             hhhhccccCCCchhHHHHHhhccCccccccccccchhccc--cchHHHHHHHHhCCHHHHHHHHHhCCCCcc---ccCCC
Q psy2938           7 KAIQTFDVGRYQPSHCQAALNQEGNIEYKAHTKTHKTFKT--SNILQLIECIRSKDTDALIETIDSGGVEVN---FMDDV   81 (113)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~---~~d~~   81 (113)
                      ..++.++..|+||+|+|+..++-..+..+...+......+  ..+.+++++|+.+++.+++++|++.|++..   ..+..
T Consensus       117 ~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~  196 (346)
T d2ajaa1         117 EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAEN  196 (346)
T ss_dssp             SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHH
T ss_pred             CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCC
Confidence            3466788899999999998888888877776665554433  446677777777778889999999887654   34456


Q ss_pred             CChHHHHHHHcCCHHHHHHHHHcCCCC
Q psy2938          82 GQTLLNWASAFGTQEMVEFLCERGADV  108 (113)
Q Consensus        82 g~tpL~~A~~~~~~~~v~~Ll~~g~~~  108 (113)
                      +.||++.|+..|+.+++++|++.|+++
T Consensus       197 ~~t~l~~A~~~g~~~iv~~Ll~~ga~~  223 (346)
T d2ajaa1         197 YYAFRWAAVGRGHHNVINFLLDCPVML  223 (346)
T ss_dssp             HHHHHHHHSTTCCHHHHHHHTTSHHHH
T ss_pred             CcchhhHHhhcCHHHHHHHHHhCCCCc
Confidence            778888999999999999999988754

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.4e-14  Score=83.09  Aligned_cols=61  Identities=20%  Similarity=0.227  Sum_probs=44.1

Q ss_pred             HHHHHHHHhCCHHHHHHHHH----hCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          50 LQLIECIRSKDTDALIETID----SGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        50 ~~~~~~~~~~~~~~~~~~L~----~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      ++++.++..++. ++++.|+    +.|++++.+|..|+||||+|+..|+.+++++|+++|++++..
T Consensus         5 TpLh~A~~~g~~-~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~   69 (228)
T d1k1aa_           5 TPLHIAVVQGNL-PAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL   69 (228)
T ss_dssp             CHHHHHHHTTCH-HHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             cHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccc
Confidence            333333333333 4544443    578889888888999999999999999999999888887754

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=3.1e-14  Score=80.09  Aligned_cols=94  Identities=14%  Similarity=0.116  Sum_probs=67.3

Q ss_pred             chhHHHHHhhccCccccccccccchhccccchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHH
Q psy2938          18 QPSHCQAALNQEGNIEYKAHTKTHKTFKTSNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEM   97 (113)
Q Consensus        18 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~   97 (113)
                      +|||+|+..++-..+..+.+.+.+.+.++..+.+++++|+.++ .+++++|++.|++++..+..|.+|++.++..++.++
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~~~~-~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~   81 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDT   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCSSC-HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCccccccccccccc-ccccccccccccccccccccCccccccccccccccc
Confidence            5667766666655555555555555556666666777776554 567888888888888888888888888888888888


Q ss_pred             HHHHHHcCCCCCCCC
Q psy2938          98 VEFLCERGADVNKGK  112 (113)
Q Consensus        98 v~~Ll~~g~~~~~~d  112 (113)
                      +.+|+..+.+++..|
T Consensus        82 ~~~l~~~~~~~~~~~   96 (156)
T d1ihba_          82 LQTLLEFQADVNIED   96 (156)
T ss_dssp             HHHHHHTTCCTTCCC
T ss_pred             ccccccccccccccc
Confidence            888888777776654

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.43  E-value=7e-14  Score=85.52  Aligned_cols=63  Identities=27%  Similarity=0.368  Sum_probs=48.7

Q ss_pred             chHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q psy2938          48 NILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGTQEMVEFLCERGADVNKG  111 (113)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g~~~~~~  111 (113)
                      +++++++++..|+. +++++|++.|+++|.+|.+|+||||+|+..|+.+++++|+++|.++...
T Consensus        40 ~~t~l~~A~~~G~~-~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~  102 (291)
T d1s70b_          40 DGAVFLAACSSGDT-EEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQP  102 (291)
T ss_dssp             HHHHHHHHHHHTCH-HHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CchHHHHHHHcCCH-HHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccc
Confidence            34555555556555 5777788888888888888888999999888888888888888876553

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.06  E-value=7.7e-11  Score=72.64  Aligned_cols=57  Identities=14%  Similarity=0.177  Sum_probs=41.9

Q ss_pred             cchHHHHHHHHhCCHHHHHHHHHhCCCCccccCCCCChHHHHHHHcCC-------HHHHHHHHH
Q psy2938          47 SNILQLIECIRSKDTDALIETIDSGGVEVNFMDDVGQTLLNWASAFGT-------QEMVEFLCE  103 (113)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~d~~g~tpL~~A~~~~~-------~~~v~~Ll~  103 (113)
                      ..+.+++|+|+..+..+++++|++.|++++.+|..|+||||.|+..++       .+++++|..
T Consensus       105 ~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~  168 (301)
T d1sw6a_         105 EHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP  168 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh
Confidence            334445555555555569999999999999999999999999998765       355555543